Query 008147
Match_columns 576
No_of_seqs 717 out of 3833
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 20:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.5E-85 5.4E-90 691.7 68.0 549 24-572 369-917 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 5.8E-70 1.3E-74 587.1 46.4 521 32-576 58-663 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-66 2.9E-71 561.1 48.1 509 27-573 150-729 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.4E-64 3E-69 534.4 54.9 418 66-512 375-799 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.2E-62 9.1E-67 513.9 46.8 463 69-572 95-565 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3.6E-61 7.9E-66 506.7 48.0 501 27-546 121-672 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-27 4.6E-32 262.4 60.7 432 22-468 326-762 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-27 6.8E-32 261.1 60.2 390 36-438 306-698 (899)
9 PRK11447 cellulose synthase su 99.9 2.4E-18 5.1E-23 191.2 59.2 372 21-401 58-522 (1157)
10 PRK11788 tetratricopeptide rep 99.9 1.5E-20 3.2E-25 186.3 36.2 305 101-445 44-354 (389)
11 PRK11788 tetratricopeptide rep 99.9 2.3E-20 5E-25 184.9 36.5 288 171-466 44-342 (389)
12 PRK11447 cellulose synthase su 99.9 5.4E-19 1.2E-23 196.3 48.7 388 34-438 278-700 (1157)
13 KOG4626 O-linked N-acetylgluco 99.9 5.2E-19 1.1E-23 167.1 38.5 399 27-444 50-489 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-17 3.6E-22 173.2 49.7 394 32-438 134-571 (615)
15 PRK15174 Vi polysaccharide exp 99.9 4.9E-18 1.1E-22 176.4 44.1 323 35-368 52-381 (656)
16 PRK15174 Vi polysaccharide exp 99.9 1.4E-17 3.1E-22 173.0 46.6 358 34-402 14-380 (656)
17 PRK10049 pgaA outer membrane p 99.9 1.1E-17 2.4E-22 177.6 46.7 398 33-445 23-461 (765)
18 KOG4626 O-linked N-acetylgluco 99.9 6.6E-19 1.4E-23 166.4 32.2 380 21-418 112-499 (966)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.9E-16 8.5E-21 162.9 51.1 244 211-463 308-563 (615)
20 KOG4422 Uncharacterized conser 99.9 4.3E-16 9.3E-21 141.3 43.7 403 28-440 118-592 (625)
21 PRK14574 hmsH outer membrane p 99.8 9.9E-16 2.2E-20 159.6 49.5 430 34-476 43-518 (822)
22 PRK10049 pgaA outer membrane p 99.8 6E-16 1.3E-20 164.5 43.9 415 45-475 2-460 (765)
23 PRK09782 bacteriophage N4 rece 99.8 1.1E-13 2.3E-18 147.6 52.8 86 32-120 189-275 (987)
24 PRK09782 bacteriophage N4 rece 99.8 2.7E-13 5.9E-18 144.6 54.1 192 268-469 476-670 (987)
25 KOG2002 TPR-containing nuclear 99.8 1.9E-14 4.1E-19 143.8 40.8 463 22-500 267-802 (1018)
26 PRK14574 hmsH outer membrane p 99.8 1.7E-13 3.6E-18 143.2 47.3 424 60-493 33-503 (822)
27 KOG2002 TPR-containing nuclear 99.7 1.9E-13 4.2E-18 136.7 43.2 427 20-455 228-727 (1018)
28 KOG2003 TPR repeat-containing 99.7 1.3E-14 2.8E-19 132.8 31.3 409 37-456 213-706 (840)
29 KOG4422 Uncharacterized conser 99.7 4E-12 8.6E-17 116.0 41.2 324 91-421 115-480 (625)
30 KOG2076 RNA polymerase III tra 99.7 6.1E-12 1.3E-16 125.4 40.8 369 27-400 141-552 (895)
31 KOG2076 RNA polymerase III tra 99.6 1.7E-11 3.7E-16 122.3 39.2 361 71-436 149-553 (895)
32 KOG1155 Anaphase-promoting com 99.6 3.7E-11 8.1E-16 111.0 37.8 259 170-437 235-494 (559)
33 TIGR00540 hemY_coli hemY prote 99.6 4.5E-12 9.7E-17 125.2 34.6 290 74-366 97-397 (409)
34 PF13429 TPR_15: Tetratricopep 99.6 5.7E-15 1.2E-19 138.5 12.6 220 136-363 53-272 (280)
35 PF13429 TPR_15: Tetratricopep 99.6 8.2E-15 1.8E-19 137.4 13.3 257 32-296 15-275 (280)
36 KOG1155 Anaphase-promoting com 99.6 1E-10 2.2E-15 108.2 39.0 292 135-437 235-535 (559)
37 KOG0495 HAT repeat protein [RN 99.6 1.6E-09 3.6E-14 104.4 47.5 414 25-455 376-798 (913)
38 PRK10747 putative protoheme IX 99.6 1.1E-11 2.4E-16 121.7 34.3 281 105-399 97-386 (398)
39 KOG1915 Cell cycle control pro 99.6 8.1E-10 1.8E-14 102.5 42.8 415 38-467 86-532 (677)
40 PRK10747 putative protoheme IX 99.6 2.5E-11 5.5E-16 119.2 35.7 283 140-437 97-389 (398)
41 KOG2003 TPR repeat-containing 99.6 1E-11 2.2E-16 114.0 30.0 379 36-424 248-709 (840)
42 KOG0495 HAT repeat protein [RN 99.6 1.3E-09 2.9E-14 105.0 45.0 434 27-482 408-854 (913)
43 TIGR00540 hemY_coli hemY prote 99.6 2.5E-11 5.4E-16 119.9 34.4 290 103-399 95-395 (409)
44 COG2956 Predicted N-acetylgluc 99.5 1.6E-10 3.5E-15 102.0 33.5 284 105-401 48-345 (389)
45 KOG0547 Translocase of outer m 99.5 8.8E-11 1.9E-15 109.2 33.1 389 33-437 123-565 (606)
46 KOG1126 DNA-binding cell divis 99.5 4E-12 8.7E-17 122.8 24.9 284 142-439 334-621 (638)
47 COG2956 Predicted N-acetylgluc 99.5 4.5E-11 9.7E-16 105.4 28.3 274 28-313 39-324 (389)
48 KOG1126 DNA-binding cell divis 99.5 8.8E-12 1.9E-16 120.5 26.2 283 76-372 334-624 (638)
49 KOG1915 Cell cycle control pro 99.5 8.4E-10 1.8E-14 102.4 37.3 399 27-438 105-536 (677)
50 COG3071 HemY Uncharacterized e 99.5 4.1E-10 9E-15 102.6 33.1 285 105-401 97-388 (400)
51 COG3071 HemY Uncharacterized e 99.4 2E-09 4.4E-14 98.2 33.6 294 133-438 88-390 (400)
52 KOG1173 Anaphase-promoting com 99.4 2.7E-09 5.9E-14 101.4 31.8 286 159-454 241-532 (611)
53 PRK12370 invasion protein regu 99.4 7.6E-10 1.7E-14 113.7 30.0 248 74-334 274-536 (553)
54 KOG1173 Anaphase-promoting com 99.4 7.8E-09 1.7E-13 98.4 33.3 287 123-419 240-532 (611)
55 KOG2047 mRNA splicing factor [ 99.4 5.1E-08 1.1E-12 94.2 39.0 301 128-437 249-614 (835)
56 KOG4318 Bicoid mRNA stability 99.4 4.8E-10 1E-14 111.6 26.2 265 88-389 21-286 (1088)
57 KOG4318 Bicoid mRNA stability 99.4 7.7E-11 1.7E-15 117.1 19.6 273 113-424 11-286 (1088)
58 TIGR02521 type_IV_pilW type IV 99.3 1.5E-09 3.2E-14 99.2 27.2 200 234-437 31-231 (234)
59 TIGR02521 type_IV_pilW type IV 99.3 1.7E-09 3.8E-14 98.7 27.3 194 130-328 34-227 (234)
60 PRK12370 invasion protein regu 99.3 1.2E-09 2.6E-14 112.3 28.6 234 211-455 275-520 (553)
61 KOG2376 Signal recognition par 99.3 4.1E-07 8.9E-12 87.4 42.8 417 28-468 15-517 (652)
62 KOG1156 N-terminal acetyltrans 99.3 4.3E-07 9.3E-12 88.3 42.3 388 37-440 53-470 (700)
63 KOG1129 TPR repeat-containing 99.3 4.8E-10 1.1E-14 99.1 20.3 227 166-401 227-456 (478)
64 PF13041 PPR_2: PPR repeat fam 99.3 5.8E-12 1.3E-16 82.6 6.5 50 372-421 1-50 (50)
65 KOG1174 Anaphase-promoting com 99.3 2.5E-07 5.5E-12 84.9 36.9 62 29-90 47-126 (564)
66 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3E-16 80.8 6.7 50 160-209 1-50 (50)
67 KOG0547 Translocase of outer m 99.3 2E-07 4.3E-12 87.5 35.2 152 282-437 339-490 (606)
68 PF12569 NARP1: NMDA receptor- 99.3 8.3E-08 1.8E-12 95.4 35.3 289 137-437 14-333 (517)
69 KOG1129 TPR repeat-containing 99.2 2.9E-09 6.3E-14 94.3 20.4 229 97-333 228-458 (478)
70 KOG3785 Uncharacterized conser 99.2 9.2E-07 2E-11 79.6 36.2 434 32-495 29-513 (557)
71 PF12569 NARP1: NMDA receptor- 99.2 7.4E-08 1.6E-12 95.7 31.9 289 70-366 13-332 (517)
72 KOG2047 mRNA splicing factor [ 99.2 6.8E-06 1.5E-10 80.0 45.2 454 26-503 24-585 (835)
73 KOG1156 N-terminal acetyltrans 99.2 3E-06 6.5E-11 82.6 38.9 394 37-445 19-440 (700)
74 KOG3785 Uncharacterized conser 99.2 3.5E-06 7.6E-11 76.0 36.3 400 27-454 57-504 (557)
75 KOG1840 Kinesin light chain [C 99.2 1.4E-07 3.1E-12 92.6 30.5 97 127-223 199-309 (508)
76 KOG1840 Kinesin light chain [C 99.1 7.8E-08 1.7E-12 94.4 25.6 197 240-436 247-477 (508)
77 PRK11189 lipoprotein NlpI; Pro 99.1 3.2E-07 6.9E-12 86.4 29.0 219 211-439 40-266 (296)
78 PRK11189 lipoprotein NlpI; Pro 99.1 9.3E-08 2E-12 89.9 25.0 196 93-299 65-266 (296)
79 COG3063 PilF Tfp pilus assembl 99.1 2.6E-07 5.7E-12 78.4 24.3 198 130-332 38-235 (250)
80 KOG4162 Predicted calmodulin-b 99.1 3.5E-06 7.7E-11 83.8 35.4 394 38-438 297-783 (799)
81 cd05804 StaR_like StaR_like; a 99.0 3.6E-06 7.8E-11 82.3 35.1 304 129-438 8-336 (355)
82 COG3063 PilF Tfp pilus assembl 99.0 6.3E-07 1.4E-11 76.2 24.4 195 239-437 40-235 (250)
83 cd05804 StaR_like StaR_like; a 99.0 7.2E-06 1.6E-10 80.2 34.6 197 203-402 120-335 (355)
84 KOG1174 Anaphase-promoting com 99.0 3.1E-05 6.7E-10 71.6 35.5 398 30-446 102-506 (564)
85 KOG0624 dsRNA-activated protei 99.0 1.4E-06 3.1E-11 78.1 25.8 321 18-369 31-371 (504)
86 KOG2376 Signal recognition par 99.0 2.5E-05 5.5E-10 75.5 35.7 385 33-435 54-517 (652)
87 PRK04841 transcriptional regul 98.9 2.4E-05 5.1E-10 86.9 41.0 337 102-438 384-760 (903)
88 KOG0548 Molecular co-chaperone 98.9 1.1E-05 2.5E-10 77.1 32.1 386 33-438 10-455 (539)
89 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.6E-12 87.8 17.1 252 31-297 7-264 (290)
90 PF04733 Coatomer_E: Coatomer 98.8 4.9E-07 1.1E-11 83.8 18.4 80 355-436 183-263 (290)
91 PRK04841 transcriptional regul 98.8 0.0001 2.2E-09 81.8 39.3 332 72-403 385-760 (903)
92 KOG1127 TPR repeat-containing 98.8 4.2E-05 9.1E-10 78.4 32.0 149 39-190 472-624 (1238)
93 KOG4340 Uncharacterized conser 98.8 4.1E-05 9E-10 67.7 27.9 287 31-328 16-334 (459)
94 KOG0624 dsRNA-activated protei 98.8 0.00014 3E-09 65.7 34.1 354 58-445 35-427 (504)
95 KOG1914 mRNA cleavage and poly 98.7 0.0003 6.5E-09 67.6 39.3 424 26-455 17-521 (656)
96 KOG1125 TPR repeat-containing 98.7 1.6E-06 3.5E-11 83.4 18.8 218 207-436 295-525 (579)
97 KOG4162 Predicted calmodulin-b 98.7 0.00051 1.1E-08 69.0 40.6 206 89-298 320-542 (799)
98 KOG3616 Selective LIM binding 98.7 5.7E-05 1.2E-09 74.8 28.4 214 72-326 717-930 (1636)
99 KOG4340 Uncharacterized conser 98.7 0.00013 2.9E-09 64.6 27.7 253 34-295 53-336 (459)
100 KOG1070 rRNA processing protei 98.7 2.7E-05 5.9E-10 82.5 27.2 237 194-435 1455-1697(1710)
101 KOG1125 TPR repeat-containing 98.7 7E-06 1.5E-10 79.2 21.3 254 137-396 295-564 (579)
102 PF12854 PPR_1: PPR repeat 98.7 3.4E-08 7.4E-13 57.9 3.8 32 369-400 2-33 (34)
103 PLN02789 farnesyltranstransfer 98.7 3.3E-05 7.2E-10 72.7 25.8 202 37-246 49-267 (320)
104 KOG0548 Molecular co-chaperone 98.6 0.00022 4.7E-09 68.6 30.9 383 71-473 12-457 (539)
105 PLN02789 farnesyltranstransfer 98.6 6.3E-05 1.4E-09 70.8 27.5 209 100-316 45-267 (320)
106 KOG0985 Vesicle coat protein c 98.6 0.00091 2E-08 69.1 36.7 323 23-400 982-1305(1666)
107 PF12854 PPR_1: PPR repeat 98.6 5.4E-08 1.2E-12 57.1 4.2 31 158-188 3-33 (34)
108 KOG1914 mRNA cleavage and poly 98.6 0.00064 1.4E-08 65.5 36.1 396 49-454 10-482 (656)
109 KOG1070 rRNA processing protei 98.6 5.8E-05 1.3E-09 80.1 28.0 225 91-324 1457-1691(1710)
110 KOG3617 WD40 and TPR repeat-co 98.6 0.00097 2.1E-08 67.4 34.8 265 36-329 811-1170(1416)
111 KOG0985 Vesicle coat protein c 98.6 0.00067 1.5E-08 70.0 33.5 300 91-435 983-1305(1666)
112 KOG1128 Uncharacterized conser 98.6 6.3E-06 1.4E-10 81.6 19.1 215 130-367 401-615 (777)
113 KOG3616 Selective LIM binding 98.6 0.00034 7.4E-09 69.6 30.3 105 245-362 743-847 (1636)
114 KOG3617 WD40 and TPR repeat-co 98.6 0.0014 3E-08 66.4 36.1 273 68-365 807-1171(1416)
115 KOG1128 Uncharacterized conser 98.5 8.2E-06 1.8E-10 80.8 18.4 213 166-401 402-614 (777)
116 COG5010 TadD Flp pilus assembl 98.5 2.9E-05 6.3E-10 67.8 19.7 152 67-221 72-226 (257)
117 TIGR03302 OM_YfiO outer membra 98.5 2.6E-05 5.7E-10 71.1 20.5 187 89-298 30-232 (235)
118 TIGR03302 OM_YfiO outer membra 98.5 4.7E-05 1E-09 69.5 21.6 63 127-191 33-99 (235)
119 PRK10370 formate-dependent nit 98.4 8.1E-05 1.8E-09 65.1 20.8 119 247-368 52-173 (198)
120 PRK10370 formate-dependent nit 98.4 6.8E-05 1.5E-09 65.6 20.2 115 319-437 54-172 (198)
121 KOG3081 Vesicle coat complex C 98.4 0.00035 7.5E-09 61.2 23.0 87 172-264 147-237 (299)
122 COG5010 TadD Flp pilus assembl 98.4 0.00013 2.9E-09 63.7 20.6 125 236-363 102-226 (257)
123 KOG2053 Mitochondrial inherita 98.4 0.0047 1E-07 63.4 45.1 224 35-264 19-256 (932)
124 KOG1127 TPR repeat-containing 98.4 0.00056 1.2E-08 70.6 27.0 359 75-446 472-885 (1238)
125 PRK15179 Vi polysaccharide bio 98.4 0.00014 3E-09 75.7 23.4 236 126-387 27-268 (694)
126 PRK15179 Vi polysaccharide bio 98.3 0.00045 9.8E-09 72.0 27.1 146 231-380 83-228 (694)
127 PRK14720 transcript cleavage f 98.3 0.00044 9.4E-09 72.9 26.5 147 26-191 28-178 (906)
128 PRK15359 type III secretion sy 98.3 3.8E-05 8.2E-10 63.5 15.5 95 95-191 27-121 (144)
129 PRK15359 type III secretion sy 98.3 4.4E-05 9.5E-10 63.1 15.6 90 346-437 31-120 (144)
130 COG4783 Putative Zn-dependent 98.3 0.0011 2.5E-08 63.2 26.4 217 213-453 253-471 (484)
131 COG4783 Putative Zn-dependent 98.3 0.00092 2E-08 63.8 25.6 114 207-325 316-429 (484)
132 PRK14720 transcript cleavage f 98.3 0.0011 2.4E-08 70.0 27.8 59 199-261 118-176 (906)
133 KOG3081 Vesicle coat complex C 98.2 0.0025 5.4E-08 56.0 24.1 107 314-425 147-257 (299)
134 TIGR02552 LcrH_SycD type III s 98.2 8.6E-05 1.9E-09 60.9 14.8 60 341-401 53-112 (135)
135 KOG3060 Uncharacterized conser 98.1 0.0037 8E-08 54.6 23.3 126 239-367 57-182 (289)
136 TIGR00756 PPR pentatricopeptid 98.1 4.7E-06 1E-10 49.7 4.2 33 376-408 2-34 (35)
137 KOG2053 Mitochondrial inherita 98.1 0.017 3.8E-07 59.5 32.6 223 73-301 21-258 (932)
138 TIGR02552 LcrH_SycD type III s 98.1 0.00019 4.2E-09 58.8 15.0 93 130-224 20-112 (135)
139 KOG3060 Uncharacterized conser 98.1 0.0057 1.2E-07 53.4 23.0 119 246-367 98-219 (289)
140 TIGR00756 PPR pentatricopeptid 98.0 9.3E-06 2E-10 48.4 4.5 33 164-196 2-34 (35)
141 PF13812 PPR_3: Pentatricopept 98.0 9.8E-06 2.1E-10 47.9 3.8 32 376-407 3-34 (34)
142 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 47.0 4.2 32 164-195 3-34 (34)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00066 1.4E-08 65.4 17.0 121 274-400 174-294 (395)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00067 1.5E-08 65.3 16.9 125 93-224 170-295 (395)
145 PF09976 TPR_21: Tetratricopep 97.9 0.0014 2.9E-08 54.4 16.5 85 277-363 56-142 (145)
146 PF10037 MRP-S27: Mitochondria 97.9 0.00032 6.9E-09 67.8 14.0 125 193-317 62-186 (429)
147 PF09976 TPR_21: Tetratricopep 97.9 0.0012 2.5E-08 54.9 15.4 118 210-329 24-143 (145)
148 PF10037 MRP-S27: Mitochondria 97.8 0.00044 9.5E-09 66.9 13.0 123 265-387 62-186 (429)
149 PRK15363 pathogenicity island 97.8 0.00074 1.6E-08 55.0 12.0 92 28-121 37-132 (157)
150 PF08579 RPM2: Mitochondrial r 97.7 0.0006 1.3E-08 51.4 10.2 77 97-173 30-115 (120)
151 PF01535 PPR: PPR repeat; Int 97.7 5.7E-05 1.2E-09 43.4 3.5 29 164-192 2-30 (31)
152 PF01535 PPR: PPR repeat; Int 97.7 6.3E-05 1.4E-09 43.2 3.5 29 376-404 2-30 (31)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0025 5.4E-08 50.7 14.0 19 136-154 11-29 (119)
154 KOG2041 WD40 repeat protein [G 97.6 0.09 1.9E-06 52.9 30.7 81 412-492 1024-1107(1189)
155 PF08579 RPM2: Mitochondrial r 97.6 0.00088 1.9E-08 50.5 9.8 79 131-209 29-116 (120)
156 cd00189 TPR Tetratricopeptide 97.6 0.0015 3.2E-08 49.3 11.7 91 97-189 5-95 (100)
157 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0038 8.2E-08 49.6 14.0 23 275-297 82-104 (119)
158 cd00189 TPR Tetratricopeptide 97.6 0.0019 4.2E-08 48.6 11.9 24 342-365 71-94 (100)
159 PLN03088 SGT1, suppressor of 97.5 0.0028 6.2E-08 61.3 14.6 85 316-402 14-98 (356)
160 KOG0553 TPR repeat-containing 97.5 0.0013 2.8E-08 58.9 10.9 99 33-135 89-190 (304)
161 PLN03088 SGT1, suppressor of 97.5 0.0041 9E-08 60.1 15.4 106 346-456 9-115 (356)
162 PF05843 Suf: Suppressor of fo 97.5 0.0027 5.9E-08 59.1 13.5 24 412-435 110-133 (280)
163 PF14559 TPR_19: Tetratricopep 97.4 0.00048 1E-08 48.4 6.1 62 35-98 1-64 (68)
164 KOG2796 Uncharacterized conser 97.4 0.082 1.8E-06 46.7 21.0 144 270-416 178-326 (366)
165 PRK10866 outer membrane biogen 97.4 0.056 1.2E-06 49.1 20.4 184 91-296 31-239 (243)
166 PF05843 Suf: Suppressor of fo 97.4 0.0062 1.3E-07 56.7 14.6 143 270-417 2-148 (280)
167 PF06239 ECSIT: Evolutionarily 97.4 0.0033 7.2E-08 53.8 11.4 48 338-385 46-98 (228)
168 PF12895 Apc3: Anaphase-promot 97.4 0.00043 9.2E-09 51.1 5.6 47 353-399 3-50 (84)
169 KOG0553 TPR repeat-containing 97.4 0.0026 5.7E-08 57.0 11.1 100 349-453 91-191 (304)
170 PRK15363 pathogenicity island 97.4 0.021 4.5E-07 46.7 15.4 82 246-329 47-128 (157)
171 PRK02603 photosystem I assembl 97.3 0.013 2.8E-07 50.2 15.3 83 272-355 38-122 (172)
172 PRK10153 DNA-binding transcrip 97.3 0.016 3.5E-07 58.7 18.0 64 372-437 418-481 (517)
173 PF06239 ECSIT: Evolutionarily 97.3 0.0029 6.3E-08 54.2 10.6 105 89-212 44-153 (228)
174 PRK10153 DNA-binding transcrip 97.3 0.018 3.9E-07 58.3 18.2 145 264-413 332-490 (517)
175 PRK02603 photosystem I assembl 97.3 0.012 2.6E-07 50.4 14.8 89 305-394 36-126 (172)
176 KOG0550 Molecular chaperone (D 97.3 0.16 3.4E-06 48.0 23.1 166 242-438 177-350 (486)
177 KOG2041 WD40 repeat protein [G 97.3 0.25 5.4E-06 49.9 25.7 322 74-437 747-1085(1189)
178 PRK10866 outer membrane biogen 97.3 0.067 1.4E-06 48.6 19.4 53 346-398 182-236 (243)
179 PF12895 Apc3: Anaphase-promot 97.3 0.0011 2.5E-08 48.8 6.7 80 38-117 2-83 (84)
180 PF14938 SNAP: Soluble NSF att 97.2 0.1 2.3E-06 48.8 21.2 135 94-244 96-245 (282)
181 PF14938 SNAP: Soluble NSF att 97.2 0.033 7.2E-07 52.1 17.6 140 341-485 116-272 (282)
182 CHL00033 ycf3 photosystem I as 97.2 0.0074 1.6E-07 51.5 12.2 27 236-262 74-100 (168)
183 CHL00033 ycf3 photosystem I as 97.2 0.015 3.2E-07 49.6 13.8 80 270-350 36-117 (168)
184 PF12688 TPR_5: Tetratrico pep 97.1 0.039 8.4E-07 43.4 13.7 54 279-332 11-66 (120)
185 PF14559 TPR_19: Tetratricopep 97.0 0.0029 6.2E-08 44.4 6.5 51 105-156 4-54 (68)
186 COG4235 Cytochrome c biogenesi 97.0 0.045 9.7E-07 49.6 15.0 30 338-367 155-184 (287)
187 PF13432 TPR_16: Tetratricopep 96.9 0.0038 8.2E-08 43.3 6.5 52 349-401 7-58 (65)
188 PF12688 TPR_5: Tetratrico pep 96.8 0.073 1.6E-06 41.9 13.6 19 174-192 13-31 (120)
189 KOG0550 Molecular chaperone (D 96.7 0.54 1.2E-05 44.6 24.3 51 33-85 57-107 (486)
190 PF13414 TPR_11: TPR repeat; P 96.7 0.0061 1.3E-07 42.9 6.3 62 374-437 3-66 (69)
191 PF13414 TPR_11: TPR repeat; P 96.7 0.0089 1.9E-07 42.0 7.0 63 92-155 3-66 (69)
192 PF13432 TPR_16: Tetratricopep 96.7 0.0081 1.8E-07 41.6 6.6 52 137-189 7-58 (65)
193 COG4235 Cytochrome c biogenesi 96.7 0.12 2.6E-06 47.0 15.4 100 266-367 153-255 (287)
194 KOG1538 Uncharacterized conser 96.7 0.25 5.4E-06 49.4 18.5 47 38-88 613-659 (1081)
195 PF04840 Vps16_C: Vps16, C-ter 96.7 0.62 1.3E-05 44.1 28.7 108 271-398 179-286 (319)
196 PF13525 YfiO: Outer membrane 96.6 0.33 7.2E-06 42.8 17.9 166 242-428 13-197 (203)
197 KOG1130 Predicted G-alpha GTPa 96.5 0.13 2.9E-06 48.4 14.8 284 33-332 25-343 (639)
198 PF13525 YfiO: Outer membrane 96.5 0.51 1.1E-05 41.6 18.4 79 309-393 115-197 (203)
199 PRK15331 chaperone protein Sic 96.5 0.032 6.9E-07 45.9 9.7 82 37-120 49-133 (165)
200 KOG1130 Predicted G-alpha GTPa 96.5 0.051 1.1E-06 51.0 12.1 265 101-366 26-342 (639)
201 PRK10803 tol-pal system protei 96.5 0.077 1.7E-06 48.6 13.2 97 128-226 144-246 (263)
202 PRK10803 tol-pal system protei 96.5 0.059 1.3E-06 49.4 12.3 61 238-298 184-246 (263)
203 PF13371 TPR_9: Tetratricopept 96.4 0.02 4.3E-07 40.7 7.4 53 349-402 5-57 (73)
204 COG4700 Uncharacterized protei 96.4 0.47 1E-05 39.8 19.1 102 160-263 87-189 (251)
205 PF07079 DUF1347: Protein of u 96.4 1 2.2E-05 43.5 41.1 422 37-468 18-521 (549)
206 COG4700 Uncharacterized protei 96.3 0.55 1.2E-05 39.4 18.6 128 301-430 86-214 (251)
207 KOG2280 Vacuolar assembly/sort 96.3 1.6 3.6E-05 44.8 23.8 107 307-432 687-793 (829)
208 PF03704 BTAD: Bacterial trans 96.3 0.03 6.5E-07 46.4 8.6 56 132-188 67-122 (146)
209 PF03704 BTAD: Bacterial trans 96.2 0.038 8.2E-07 45.8 8.9 73 93-166 63-140 (146)
210 KOG1538 Uncharacterized conser 96.1 0.49 1.1E-05 47.4 16.9 251 127-401 556-844 (1081)
211 PF13371 TPR_9: Tetratricopept 96.1 0.049 1.1E-06 38.6 7.9 55 101-156 4-58 (73)
212 PF12921 ATP13: Mitochondrial 96.1 0.14 3E-06 40.8 10.9 53 192-245 47-99 (126)
213 PF12921 ATP13: Mitochondrial 95.9 0.12 2.5E-06 41.2 10.1 52 158-209 48-100 (126)
214 KOG2114 Vacuolar assembly/sort 95.9 1.9 4.2E-05 44.9 20.5 146 33-187 342-488 (933)
215 COG3118 Thioredoxin domain-con 95.8 0.53 1.2E-05 42.8 14.6 145 33-181 142-291 (304)
216 PRK15331 chaperone protein Sic 95.8 0.93 2E-05 37.6 14.8 91 275-367 43-133 (165)
217 PF04053 Coatomer_WDAD: Coatom 95.7 0.86 1.9E-05 45.3 17.2 172 21-223 257-428 (443)
218 COG4649 Uncharacterized protei 95.6 0.46 1E-05 39.3 12.2 122 34-155 67-195 (221)
219 PF09205 DUF1955: Domain of un 95.6 0.88 1.9E-05 35.8 13.0 57 347-404 94-150 (161)
220 PF13424 TPR_12: Tetratricopep 95.6 0.037 7.9E-07 40.0 5.5 61 376-436 7-73 (78)
221 PF13281 DUF4071: Domain of un 95.5 2.5 5.5E-05 40.6 21.4 172 239-438 146-334 (374)
222 KOG3941 Intermediate in Toll s 95.5 0.14 3E-06 45.7 9.5 123 82-223 55-185 (406)
223 PF13424 TPR_12: Tetratricopep 95.4 0.047 1E-06 39.4 5.7 62 340-401 6-73 (78)
224 COG5107 RNA14 Pre-mRNA 3'-end 95.2 3.3 7.1E-05 40.1 36.0 80 58-139 39-121 (660)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.12 2.7E-06 50.0 8.8 99 336-440 72-176 (453)
226 PF13281 DUF4071: Domain of un 95.1 3.4 7.3E-05 39.7 21.1 31 268-298 304-334 (374)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.45 9.8E-06 46.3 12.4 66 19-86 69-137 (453)
228 COG3118 Thioredoxin domain-con 95.1 2.7 5.8E-05 38.4 17.6 147 137-288 144-291 (304)
229 PF04053 Coatomer_WDAD: Coatom 95.1 0.77 1.7E-05 45.6 14.5 81 196-293 346-426 (443)
230 COG3898 Uncharacterized membra 95.0 3.4 7.5E-05 39.2 32.5 125 310-443 269-397 (531)
231 PF04840 Vps16_C: Vps16, C-ter 94.9 3.7 8E-05 39.0 29.5 109 236-364 179-287 (319)
232 KOG0543 FKBP-type peptidyl-pro 94.8 0.56 1.2E-05 44.6 12.0 140 32-191 215-355 (397)
233 KOG0543 FKBP-type peptidyl-pro 94.8 0.47 1E-05 45.0 11.4 77 340-419 258-334 (397)
234 PF10300 DUF3808: Protein of u 94.8 1.9 4.1E-05 43.6 16.7 177 147-332 177-375 (468)
235 COG3898 Uncharacterized membra 94.8 3.9 8.5E-05 38.8 31.8 263 175-454 97-372 (531)
236 KOG4555 TPR repeat-containing 94.6 1.6 3.4E-05 34.3 11.8 91 101-192 52-145 (175)
237 KOG2796 Uncharacterized conser 94.5 3.4 7.3E-05 37.0 26.4 132 165-299 180-316 (366)
238 KOG3941 Intermediate in Toll s 94.4 0.36 7.8E-06 43.3 9.2 117 124-261 64-186 (406)
239 PRK11906 transcriptional regul 94.4 3.3 7.2E-05 40.6 16.4 109 353-464 318-429 (458)
240 smart00299 CLH Clathrin heavy 94.3 2.4 5.2E-05 34.6 15.7 40 134-174 14-53 (140)
241 PF13512 TPR_18: Tetratricopep 94.3 1.9 4.2E-05 34.8 12.3 78 99-176 17-96 (142)
242 PF04184 ST7: ST7 protein; In 93.9 6 0.00013 39.1 16.9 61 130-190 262-323 (539)
243 KOG2610 Uncharacterized conser 93.7 2.3 5.1E-05 39.3 13.0 151 174-329 115-272 (491)
244 COG1729 Uncharacterized protei 93.7 1.3 2.8E-05 40.0 11.3 60 203-262 184-243 (262)
245 PF13170 DUF4003: Protein of u 93.6 6.5 0.00014 36.9 17.8 132 286-419 79-227 (297)
246 COG3629 DnrI DNA-binding trans 93.5 1 2.3E-05 41.2 10.7 77 129-206 155-236 (280)
247 PRK11906 transcriptional regul 93.5 8.4 0.00018 37.9 17.9 80 286-367 321-400 (458)
248 KOG2610 Uncharacterized conser 93.5 2.5 5.5E-05 39.1 12.8 154 209-366 115-274 (491)
249 COG1729 Uncharacterized protei 93.4 1.5 3.2E-05 39.6 11.4 99 199-298 144-244 (262)
250 PF09205 DUF1955: Domain of un 93.4 3.2 7E-05 32.8 13.2 62 273-335 90-151 (161)
251 KOG4555 TPR repeat-containing 93.3 2 4.4E-05 33.8 10.3 91 348-439 52-145 (175)
252 KOG1941 Acetylcholine receptor 93.2 3.4 7.4E-05 38.8 13.4 128 239-366 127-273 (518)
253 COG5107 RNA14 Pre-mRNA 3'-end 93.0 9.3 0.0002 37.1 33.7 145 304-454 397-545 (660)
254 smart00299 CLH Clathrin heavy 92.9 4.4 9.5E-05 33.1 15.8 127 94-245 9-136 (140)
255 COG0457 NrfG FOG: TPR repeat [ 92.8 6.6 0.00014 34.9 30.2 200 235-438 60-265 (291)
256 KOG1920 IkappaB kinase complex 92.8 18 0.00039 39.9 26.4 114 302-435 933-1052(1265)
257 COG4105 ComL DNA uptake lipopr 92.7 7.2 0.00016 35.0 20.8 52 246-297 46-99 (254)
258 PF10300 DUF3808: Protein of u 92.7 13 0.00028 37.7 24.2 180 180-367 175-375 (468)
259 PF13428 TPR_14: Tetratricopep 92.6 0.47 1E-05 29.5 5.3 24 344-367 6-29 (44)
260 KOG1258 mRNA processing protei 92.5 13 0.00029 37.6 37.7 127 28-156 44-180 (577)
261 PF13170 DUF4003: Protein of u 92.4 6.8 0.00015 36.7 14.8 47 145-191 80-132 (297)
262 COG3629 DnrI DNA-binding trans 92.3 1.9 4.1E-05 39.5 10.6 77 376-453 155-236 (280)
263 COG4785 NlpI Lipoprotein NlpI, 92.3 7.2 0.00015 33.9 14.3 84 72-156 76-162 (297)
264 PF13428 TPR_14: Tetratricopep 92.2 0.61 1.3E-05 29.0 5.4 27 95-121 4-30 (44)
265 PF04184 ST7: ST7 protein; In 92.1 13 0.00029 36.8 17.4 58 309-366 264-322 (539)
266 PF13512 TPR_18: Tetratricopep 92.1 5.5 0.00012 32.3 11.9 23 203-225 53-75 (142)
267 KOG2280 Vacuolar assembly/sort 92.0 18 0.00038 37.8 31.9 301 120-435 425-770 (829)
268 KOG1920 IkappaB kinase complex 91.8 24 0.00052 39.0 21.3 112 271-400 941-1052(1265)
269 PF07079 DUF1347: Protein of u 91.5 15 0.00032 36.0 41.6 383 71-464 16-484 (549)
270 TIGR02508 type_III_yscG type I 91.4 4.7 0.0001 30.1 9.9 88 38-130 18-105 (115)
271 PF07575 Nucleopor_Nup85: Nup8 91.2 21 0.00046 37.3 18.9 148 289-453 390-539 (566)
272 PF10602 RPN7: 26S proteasome 91.1 6.4 0.00014 33.7 12.1 61 129-189 38-100 (177)
273 PF09613 HrpB1_HrpK: Bacterial 90.6 8.4 0.00018 31.9 11.7 50 37-88 22-71 (160)
274 KOG2114 Vacuolar assembly/sort 90.6 7.1 0.00015 41.0 13.5 177 199-400 336-516 (933)
275 PF10602 RPN7: 26S proteasome 90.5 5.1 0.00011 34.3 11.0 62 271-332 38-101 (177)
276 PF08631 SPO22: Meiosis protei 90.4 15 0.00033 34.2 24.8 62 199-263 86-150 (278)
277 COG4105 ComL DNA uptake lipopr 90.0 14 0.00031 33.2 19.8 55 381-436 174-231 (254)
278 COG4785 NlpI Lipoprotein NlpI, 89.8 13 0.00028 32.5 15.8 182 246-439 77-267 (297)
279 KOG1585 Protein required for f 89.3 15 0.00033 32.7 16.8 207 94-327 33-250 (308)
280 PF07035 Mic1: Colon cancer-as 89.2 12 0.00027 31.4 15.0 29 258-286 18-46 (167)
281 COG0457 NrfG FOG: TPR repeat [ 88.9 16 0.00034 32.3 30.1 201 198-402 60-264 (291)
282 COG2976 Uncharacterized protei 88.9 11 0.00023 32.4 11.1 117 38-157 66-189 (207)
283 PRK09687 putative lyase; Provi 88.9 20 0.00043 33.4 29.9 236 87-349 32-277 (280)
284 PF13176 TPR_7: Tetratricopept 88.7 1.2 2.5E-05 26.2 4.2 26 411-436 1-26 (36)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 88.6 5.7 0.00012 29.4 8.2 63 389-453 22-85 (103)
286 PF13176 TPR_7: Tetratricopept 88.4 1.2 2.7E-05 26.1 4.1 23 165-187 2-24 (36)
287 PF00515 TPR_1: Tetratricopept 88.1 1.1 2.5E-05 25.7 3.9 20 416-435 8-27 (34)
288 KOG2066 Vacuolar assembly/sort 87.9 39 0.00084 35.6 26.3 103 32-139 363-467 (846)
289 PF13929 mRNA_stabil: mRNA sta 87.7 23 0.00049 32.7 15.8 133 284-416 143-285 (292)
290 KOG0276 Vesicle coat complex C 87.7 5.9 0.00013 39.9 10.3 98 104-222 649-746 (794)
291 PF09613 HrpB1_HrpK: Bacterial 87.6 15 0.00033 30.5 12.8 18 138-155 55-72 (160)
292 PF08631 SPO22: Meiosis protei 87.5 24 0.00053 32.9 27.5 162 103-269 4-192 (278)
293 PF00515 TPR_1: Tetratricopept 87.5 1.6 3.4E-05 25.1 4.2 32 375-408 2-33 (34)
294 PF07035 Mic1: Colon cancer-as 87.3 17 0.00036 30.6 16.2 133 183-332 15-148 (167)
295 PF13431 TPR_17: Tetratricopep 87.3 1.1 2.4E-05 25.9 3.4 24 266-289 10-33 (34)
296 KOG1585 Protein required for f 87.0 22 0.00048 31.7 17.9 25 130-154 34-58 (308)
297 KOG4570 Uncharacterized conser 86.8 12 0.00026 34.6 11.0 97 303-401 63-162 (418)
298 PF13431 TPR_17: Tetratricopep 85.9 0.59 1.3E-05 27.1 1.7 24 89-112 10-33 (34)
299 TIGR02561 HrpB1_HrpK type III 85.6 13 0.00029 30.3 9.6 65 37-103 22-87 (153)
300 COG4649 Uncharacterized protei 85.5 21 0.00045 30.0 14.4 124 244-367 68-195 (221)
301 PF07719 TPR_2: Tetratricopept 84.9 2.1 4.7E-05 24.3 3.9 16 384-399 11-26 (34)
302 KOG4648 Uncharacterized conser 84.6 6.2 0.00014 36.8 8.3 85 71-156 107-194 (536)
303 PF02284 COX5A: Cytochrome c o 84.3 15 0.00034 27.6 10.2 62 392-454 28-89 (108)
304 PF11207 DUF2989: Protein of u 84.0 13 0.00028 32.2 9.4 22 267-288 176-197 (203)
305 PF07719 TPR_2: Tetratricopept 83.2 3.3 7.1E-05 23.5 4.2 29 410-438 2-30 (34)
306 KOG4570 Uncharacterized conser 82.7 22 0.00048 33.0 10.8 105 192-298 59-164 (418)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 82.5 12 0.00027 27.8 7.5 46 109-154 24-69 (103)
308 KOG1941 Acetylcholine receptor 82.5 46 0.001 31.7 18.9 166 271-436 85-273 (518)
309 KOG1258 mRNA processing protei 82.4 62 0.0013 33.1 33.4 365 37-424 91-490 (577)
310 PRK11619 lytic murein transgly 82.2 73 0.0016 33.9 38.4 55 275-330 318-372 (644)
311 KOG0276 Vesicle coat complex C 82.2 23 0.0005 36.0 11.6 43 174-222 649-691 (794)
312 TIGR02561 HrpB1_HrpK type III 81.6 28 0.0006 28.5 11.2 48 105-156 23-73 (153)
313 KOG1550 Extracellular protein 81.6 72 0.0016 33.3 25.6 179 143-335 228-428 (552)
314 PF13374 TPR_10: Tetratricopep 81.4 3.6 7.8E-05 24.7 4.1 24 376-399 4-27 (42)
315 COG2976 Uncharacterized protei 80.9 36 0.00077 29.3 13.3 91 242-334 97-189 (207)
316 KOG1586 Protein required for f 80.9 40 0.00087 30.0 12.5 17 316-332 166-182 (288)
317 KOG1550 Extracellular protein 80.5 78 0.0017 33.0 27.0 184 108-301 228-429 (552)
318 PF02284 COX5A: Cytochrome c o 80.4 10 0.00023 28.5 6.6 46 252-297 28-73 (108)
319 PF06552 TOM20_plant: Plant sp 80.1 32 0.00068 29.2 10.1 61 391-455 52-124 (186)
320 PF06552 TOM20_plant: Plant sp 79.3 32 0.00069 29.2 9.9 78 356-443 52-141 (186)
321 PF13374 TPR_10: Tetratricopep 79.0 5.7 0.00012 23.8 4.5 29 409-437 2-30 (42)
322 PF00637 Clathrin: Region in C 78.5 0.67 1.4E-05 38.1 0.0 84 345-435 13-96 (143)
323 COG4455 ImpE Protein of avirul 78.1 20 0.00042 31.4 8.5 16 202-217 40-55 (273)
324 PF00637 Clathrin: Region in C 77.8 1.1 2.5E-05 36.7 1.2 53 99-151 14-66 (143)
325 PF02259 FAT: FAT domain; Int 77.0 73 0.0016 30.7 24.7 64 269-332 146-212 (352)
326 PF09477 Type_III_YscG: Bacter 77.0 30 0.00066 26.3 9.4 82 37-122 18-99 (116)
327 PRK09687 putative lyase; Provi 76.9 64 0.0014 30.1 30.8 136 268-419 141-277 (280)
328 COG4455 ImpE Protein of avirul 76.8 23 0.00049 31.1 8.5 74 132-206 6-81 (273)
329 TIGR02508 type_III_yscG type I 76.6 30 0.00064 26.0 8.2 58 136-200 48-105 (115)
330 PF13181 TPR_8: Tetratricopept 76.4 4.3 9.2E-05 23.1 3.1 18 382-399 9-26 (34)
331 COG3947 Response regulator con 76.2 65 0.0014 29.8 15.9 58 272-330 282-339 (361)
332 PF04097 Nic96: Nup93/Nic96; 75.5 1.2E+02 0.0025 32.3 16.9 43 167-210 116-158 (613)
333 PF07443 HARP: HepA-related pr 74.7 1.5 3.2E-05 28.6 0.8 26 551-576 8-33 (55)
334 PF02259 FAT: FAT domain; Int 74.0 87 0.0019 30.2 23.1 67 232-298 144-213 (352)
335 KOG2471 TPR repeat-containing 74.0 61 0.0013 32.2 11.5 105 349-455 250-380 (696)
336 KOG1464 COP9 signalosome, subu 73.5 72 0.0016 29.0 18.2 203 229-432 21-254 (440)
337 PF13762 MNE1: Mitochondrial s 72.9 51 0.0011 27.0 10.7 81 376-456 41-127 (145)
338 COG1747 Uncharacterized N-term 71.0 1.2E+02 0.0026 30.5 23.9 178 270-455 67-250 (711)
339 KOG4077 Cytochrome c oxidase, 70.7 34 0.00073 27.0 7.3 61 392-453 67-127 (149)
340 PF07721 TPR_4: Tetratricopept 70.6 6.8 0.00015 20.9 2.8 18 345-362 7-24 (26)
341 TIGR03504 FimV_Cterm FimV C-te 70.6 12 0.00025 23.3 4.1 24 415-438 5-28 (44)
342 PF14853 Fis1_TPR_C: Fis1 C-te 69.9 24 0.00052 23.0 5.6 37 415-453 7-43 (53)
343 COG3947 Response regulator con 69.8 94 0.002 28.8 16.1 59 307-366 282-340 (361)
344 PF08311 Mad3_BUB1_I: Mad3/BUB 69.6 24 0.00052 28.2 6.8 43 43-85 81-123 (126)
345 PF13181 TPR_8: Tetratricopept 69.3 16 0.00034 20.6 4.4 28 410-437 2-29 (34)
346 TIGR03504 FimV_Cterm FimV C-te 68.9 13 0.00027 23.2 4.0 22 133-154 5-26 (44)
347 KOG3807 Predicted membrane pro 68.5 96 0.0021 29.2 11.0 48 173-222 286-336 (556)
348 COG2909 MalT ATP-dependent tra 68.3 1.8E+02 0.004 31.5 26.7 87 138-224 426-524 (894)
349 KOG4234 TPR repeat-containing 68.2 81 0.0017 27.4 10.1 90 101-191 104-197 (271)
350 PF13174 TPR_6: Tetratricopept 67.7 8.8 0.00019 21.4 3.1 18 137-154 10-27 (33)
351 PF07163 Pex26: Pex26 protein; 67.6 75 0.0016 29.2 9.9 21 346-366 125-145 (309)
352 KOG4648 Uncharacterized conser 67.4 36 0.00078 32.0 8.1 93 100-196 105-197 (536)
353 KOG4234 TPR repeat-containing 65.5 92 0.002 27.1 10.0 20 348-367 177-196 (271)
354 PF07163 Pex26: Pex26 protein; 64.9 1.1E+02 0.0023 28.3 10.3 88 98-185 89-181 (309)
355 PF02847 MA3: MA3 domain; Int 64.0 66 0.0014 24.8 8.8 71 378-450 6-78 (113)
356 PF10345 Cohesin_load: Cohesin 63.8 2E+02 0.0044 30.5 36.9 192 26-223 27-251 (608)
357 PF11207 DUF2989: Protein of u 63.0 1E+02 0.0023 26.8 15.8 77 139-217 119-198 (203)
358 KOG0403 Neoplastic transformat 61.7 1.7E+02 0.0037 28.9 16.6 77 307-388 512-588 (645)
359 KOG0890 Protein kinase of the 60.6 4.1E+02 0.0088 32.8 25.7 62 304-368 1670-1731(2382)
360 KOG0991 Replication factor C, 60.4 1.3E+02 0.0028 27.0 12.5 21 175-195 251-271 (333)
361 PF09477 Type_III_YscG: Bacter 60.0 77 0.0017 24.3 9.0 79 107-192 21-99 (116)
362 cd08819 CARD_MDA5_2 Caspase ac 59.5 68 0.0015 23.5 6.9 14 318-331 50-63 (88)
363 PF14561 TPR_20: Tetratricopep 58.5 57 0.0012 24.1 6.6 35 21-55 18-52 (90)
364 PF13762 MNE1: Mitochondrial s 57.8 1.1E+02 0.0023 25.2 10.5 80 130-209 42-127 (145)
365 PF13929 mRNA_stabil: mRNA sta 57.4 1.6E+02 0.0036 27.3 22.2 62 231-292 199-261 (292)
366 COG1747 Uncharacterized N-term 57.3 2.2E+02 0.0048 28.8 25.0 181 91-280 65-250 (711)
367 PF10366 Vps39_1: Vacuolar sor 56.5 81 0.0018 24.3 7.4 27 271-297 41-67 (108)
368 KOG2297 Predicted translation 56.4 1.7E+02 0.0038 27.3 19.7 73 277-359 263-341 (412)
369 KOG1586 Protein required for f 56.3 1.5E+02 0.0033 26.6 19.9 100 385-486 165-272 (288)
370 PF11848 DUF3368: Domain of un 56.3 42 0.00091 21.3 4.8 33 419-451 12-44 (48)
371 PHA02875 ankyrin repeat protei 56.1 2.2E+02 0.0047 28.3 14.9 10 394-403 300-309 (413)
372 PRK15180 Vi polysaccharide bio 56.0 2.2E+02 0.0048 28.4 14.8 122 244-369 299-421 (831)
373 KOG2034 Vacuolar sorting prote 56.0 3E+02 0.0066 30.0 29.4 79 27-115 360-438 (911)
374 KOG0890 Protein kinase of the 55.7 4.9E+02 0.011 32.2 24.8 316 97-438 1388-1731(2382)
375 KOG4077 Cytochrome c oxidase, 55.1 1E+02 0.0022 24.5 7.4 44 289-332 69-112 (149)
376 cd08819 CARD_MDA5_2 Caspase ac 55.0 66 0.0014 23.6 6.0 32 75-107 50-81 (88)
377 smart00028 TPR Tetratricopepti 54.9 23 0.00051 18.7 3.4 18 382-399 9-26 (34)
378 PF08424 NRDE-2: NRDE-2, neces 54.9 2E+02 0.0043 27.5 16.8 58 146-205 50-107 (321)
379 KOG1464 COP9 signalosome, subu 53.8 1.8E+02 0.0039 26.6 17.2 48 142-189 42-92 (440)
380 PF10255 Paf67: RNA polymerase 53.3 2.4E+02 0.0051 27.9 11.5 61 130-190 125-192 (404)
381 PF11848 DUF3368: Domain of un 53.3 56 0.0012 20.7 5.1 25 141-165 16-40 (48)
382 PF04190 DUF410: Protein of un 52.6 1.9E+02 0.0041 26.6 14.6 26 125-150 88-113 (260)
383 PF10579 Rapsyn_N: Rapsyn N-te 52.0 57 0.0012 23.3 5.2 44 105-148 19-64 (80)
384 PF14689 SPOB_a: Sensor_kinase 51.8 36 0.00079 23.0 4.3 27 410-436 24-50 (62)
385 COG5108 RPO41 Mitochondrial DN 51.6 1.3E+02 0.0029 31.3 9.6 74 309-385 33-114 (1117)
386 PF10579 Rapsyn_N: Rapsyn N-te 50.5 55 0.0012 23.4 5.0 43 282-324 19-63 (80)
387 PF14853 Fis1_TPR_C: Fis1 C-te 49.0 62 0.0013 21.1 4.8 31 380-412 7-37 (53)
388 cd00280 TRFH Telomeric Repeat 48.7 1.3E+02 0.0028 25.8 7.6 38 381-421 118-155 (200)
389 COG5159 RPN6 26S proteasome re 48.4 2.3E+02 0.0049 26.3 21.9 210 27-236 5-245 (421)
390 PF14689 SPOB_a: Sensor_kinase 48.4 54 0.0012 22.2 4.7 21 168-188 29-49 (62)
391 KOG2396 HAT (Half-A-TPR) repea 48.3 3.1E+02 0.0067 27.8 35.7 93 342-437 463-558 (568)
392 COG5108 RPO41 Mitochondrial DN 47.7 1.6E+02 0.0036 30.7 9.6 91 167-262 33-131 (1117)
393 PF10345 Cohesin_load: Cohesin 47.2 3.8E+02 0.0082 28.5 37.4 156 33-189 67-252 (608)
394 KOG2471 TPR repeat-containing 47.1 2.9E+02 0.0063 27.9 10.8 77 343-421 287-381 (696)
395 PF09868 DUF2095: Uncharacteri 47.0 83 0.0018 24.2 5.7 33 133-166 67-99 (128)
396 KOG2297 Predicted translation 46.5 2.5E+02 0.0055 26.3 15.9 69 246-324 267-341 (412)
397 smart00777 Mad3_BUB1_I Mad3/BU 45.5 73 0.0016 25.3 5.7 24 93-116 100-123 (125)
398 COG2909 MalT ATP-dependent tra 45.5 4.5E+02 0.0097 28.8 27.0 228 207-434 425-684 (894)
399 PF11663 Toxin_YhaV: Toxin wit 45.3 16 0.00035 29.1 1.9 24 546-570 107-130 (140)
400 PF11663 Toxin_YhaV: Toxin wit 44.8 20 0.00043 28.6 2.3 31 281-313 107-137 (140)
401 KOG2063 Vacuolar assembly/sort 44.4 4.8E+02 0.01 28.9 21.6 55 32-88 314-373 (877)
402 PF11846 DUF3366: Domain of un 44.4 1.2E+02 0.0027 26.2 7.7 33 405-437 140-172 (193)
403 PF08424 NRDE-2: NRDE-2, neces 44.1 2.9E+02 0.0064 26.4 18.6 59 288-348 50-108 (321)
404 COG0735 Fur Fe2+/Zn2+ uptake r 44.1 1.2E+02 0.0027 24.8 7.1 31 310-340 26-56 (145)
405 PF04097 Nic96: Nup93/Nic96; 43.6 4.3E+02 0.0093 28.1 19.3 219 128-368 113-356 (613)
406 COG0735 Fur Fe2+/Zn2+ uptake r 42.9 1.5E+02 0.0032 24.4 7.4 62 256-318 8-69 (145)
407 PF09670 Cas_Cas02710: CRISPR- 42.2 3.5E+02 0.0075 26.7 12.2 55 278-333 140-198 (379)
408 KOG0991 Replication factor C, 40.8 2.7E+02 0.0059 25.0 13.5 40 406-446 236-275 (333)
409 KOG4507 Uncharacterized conser 40.2 1.5E+02 0.0032 30.5 7.9 152 159-315 568-721 (886)
410 COG4003 Uncharacterized protei 39.3 1.3E+02 0.0028 21.6 5.3 25 133-157 37-61 (98)
411 TIGR01503 MthylAspMut_E methyl 39.2 3E+02 0.0065 27.6 9.7 46 319-367 69-114 (480)
412 PF11846 DUF3366: Domain of un 39.2 1.5E+02 0.0033 25.6 7.5 32 371-402 141-172 (193)
413 KOG0376 Serine-threonine phosp 38.8 60 0.0013 32.2 5.1 103 32-138 11-116 (476)
414 KOG1308 Hsp70-interacting prot 37.7 16 0.00034 34.3 1.0 91 73-165 126-220 (377)
415 PF10366 Vps39_1: Vacuolar sor 37.7 1.9E+02 0.0041 22.3 7.3 26 307-332 42-67 (108)
416 KOG4521 Nuclear pore complex, 37.0 6.9E+02 0.015 28.6 13.1 169 37-220 932-1125(1480)
417 KOG0545 Aryl-hydrocarbon recep 36.7 3.3E+02 0.0071 24.8 9.5 91 31-121 184-293 (329)
418 smart00386 HAT HAT (Half-A-TPR 36.7 73 0.0016 17.2 4.1 24 39-64 1-24 (33)
419 PRK10564 maltose regulon perip 36.7 72 0.0016 29.7 5.0 30 130-159 260-289 (303)
420 PRK10564 maltose regulon perip 36.3 75 0.0016 29.6 5.0 42 90-131 254-296 (303)
421 KOG2066 Vacuolar assembly/sort 36.1 5.9E+02 0.013 27.5 25.3 102 99-209 363-467 (846)
422 TIGR03362 VI_chp_7 type VI sec 36.1 3.8E+02 0.0083 25.3 12.8 48 26-75 100-147 (301)
423 KOG4567 GTPase-activating prot 35.7 2.6E+02 0.0057 26.2 8.2 71 147-222 263-343 (370)
424 PF00356 LacI: Bacterial regul 35.5 70 0.0015 20.1 3.4 42 523-569 4-46 (46)
425 PF12862 Apc5: Anaphase-promot 35.2 1.9E+02 0.004 21.5 6.8 21 134-154 48-68 (94)
426 PF09454 Vps23_core: Vps23 cor 34.8 80 0.0017 21.7 3.8 30 128-157 9-38 (65)
427 KOG4642 Chaperone-dependent E3 33.6 3.7E+02 0.0079 24.4 10.9 112 318-433 24-141 (284)
428 KOG1166 Mitotic checkpoint ser 33.6 1.5E+02 0.0033 33.0 7.6 69 19-88 73-141 (974)
429 PRK11639 zinc uptake transcrip 33.2 2.6E+02 0.0057 23.6 7.6 42 136-177 34-75 (169)
430 cd08326 CARD_CASP9 Caspase act 32.8 2E+02 0.0042 21.0 6.0 60 45-109 19-78 (84)
431 KOG4507 Uncharacterized conser 32.7 5.9E+02 0.013 26.5 10.6 86 282-368 620-705 (886)
432 PF04190 DUF410: Protein of un 32.5 4E+02 0.0087 24.5 10.7 39 77-115 73-113 (260)
433 PHA02875 ankyrin repeat protei 32.1 5.1E+02 0.011 25.6 16.3 76 137-220 9-88 (413)
434 PF07575 Nucleopor_Nup85: Nup8 32.1 2E+02 0.0043 30.2 8.1 29 126-154 404-432 (566)
435 PF12862 Apc5: Anaphase-promot 32.0 2.1E+02 0.0046 21.2 6.7 54 385-438 9-70 (94)
436 PF09454 Vps23_core: Vps23 cor 31.6 1.5E+02 0.0033 20.3 4.7 50 90-140 6-55 (65)
437 KOG3824 Huntingtin interacting 31.3 2.6E+02 0.0056 26.2 7.4 49 37-87 128-176 (472)
438 PF09986 DUF2225: Uncharacteri 31.1 93 0.002 27.6 4.7 28 95-122 168-195 (214)
439 cd08332 CARD_CASP2 Caspase act 30.9 2.1E+02 0.0045 21.2 5.8 56 46-106 24-79 (90)
440 PF09868 DUF2095: Uncharacteri 29.9 2.3E+02 0.0049 22.0 5.7 40 97-137 66-105 (128)
441 PRK09857 putative transposase; 29.8 4.8E+02 0.01 24.6 9.8 66 130-196 209-274 (292)
442 PF12069 DUF3549: Protein of u 29.4 5.2E+02 0.011 24.9 14.4 31 125-155 228-258 (340)
443 PF12926 MOZART2: Mitotic-spin 29.1 2.3E+02 0.0051 20.7 8.1 43 113-155 29-71 (88)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 28.9 3E+02 0.0065 21.9 9.9 43 110-152 81-124 (126)
445 KOG2908 26S proteasome regulat 28.4 5.4E+02 0.012 24.7 10.5 21 382-402 123-143 (380)
446 KOG0376 Serine-threonine phosp 28.4 1.9E+02 0.0041 28.9 6.6 99 315-419 15-115 (476)
447 KOG1308 Hsp70-interacting prot 28.3 54 0.0012 31.0 2.8 90 352-444 127-217 (377)
448 PRK11639 zinc uptake transcrip 28.1 3.2E+02 0.007 23.1 7.3 37 318-354 39-75 (169)
449 PF11123 DNA_Packaging_2: DNA 27.8 2.2E+02 0.0048 20.0 5.3 33 249-282 12-44 (82)
450 KOG0403 Neoplastic transformat 27.8 6.3E+02 0.014 25.3 18.9 75 377-456 512-586 (645)
451 PRK10941 hypothetical protein; 27.6 5E+02 0.011 24.1 10.7 56 203-261 187-242 (269)
452 KOG4567 GTPase-activating prot 27.5 4.1E+02 0.0088 25.1 8.0 43 255-297 264-306 (370)
453 COG5187 RPN7 26S proteasome re 27.3 5.2E+02 0.011 24.2 12.0 153 321-475 55-226 (412)
454 PF11817 Foie-gras_1: Foie gra 26.8 3.6E+02 0.0078 24.5 8.0 57 203-259 184-243 (247)
455 smart00638 LPD_N Lipoprotein N 26.7 7.7E+02 0.017 25.9 24.9 271 249-545 289-574 (574)
456 PF11817 Foie-gras_1: Foie gra 26.7 3.7E+02 0.0081 24.4 8.1 54 275-328 184-242 (247)
457 PF10475 DUF2450: Protein of u 25.9 5.6E+02 0.012 24.1 10.2 51 168-224 104-154 (291)
458 PRK09462 fur ferric uptake reg 25.8 3.5E+02 0.0076 22.2 7.1 35 355-389 33-67 (148)
459 KOG3364 Membrane protein invol 25.5 3.7E+02 0.008 21.9 9.0 88 106-196 12-103 (149)
460 PF02184 HAT: HAT (Half-A-TPR) 25.5 1.4E+02 0.0031 17.1 3.2 9 392-400 5-13 (32)
461 cd07153 Fur_like Ferric uptake 25.2 2E+02 0.0044 22.2 5.4 42 100-141 8-49 (116)
462 COG0790 FOG: TPR repeat, SEL1 24.8 5.7E+02 0.012 23.8 22.5 45 357-404 173-221 (292)
463 PF15297 CKAP2_C: Cytoskeleton 24.6 6.4E+02 0.014 24.3 10.2 64 390-455 119-186 (353)
464 PF09670 Cas_Cas02710: CRISPR- 24.6 6.9E+02 0.015 24.6 12.1 53 314-367 141-197 (379)
465 COG2256 MGS1 ATPase related to 24.2 7.1E+02 0.015 24.7 15.2 94 104-212 202-299 (436)
466 PF11838 ERAP1_C: ERAP1-like C 24.0 6.2E+02 0.013 23.9 19.6 190 99-294 45-262 (324)
467 KOG2063 Vacuolar assembly/sort 23.7 1E+03 0.023 26.5 18.7 39 206-246 600-638 (877)
468 PRK09462 fur ferric uptake reg 23.6 4.1E+02 0.009 21.7 7.6 15 143-157 33-47 (148)
469 PF00244 14-3-3: 14-3-3 protei 23.4 5.6E+02 0.012 23.2 9.1 57 98-154 7-64 (236)
470 PRK15180 Vi polysaccharide bio 23.3 7.9E+02 0.017 24.9 31.4 136 18-157 283-421 (831)
471 PF07064 RIC1: RIC1; InterPro 23.2 5.9E+02 0.013 23.4 15.6 26 95-120 85-110 (258)
472 PRK13800 putative oxidoreducta 23.1 1.1E+03 0.024 26.6 31.1 252 85-367 628-880 (897)
473 KOG0687 26S proteasome regulat 22.9 6.7E+02 0.015 23.9 15.4 167 283-473 36-213 (393)
474 PRK10941 hypothetical protein; 22.7 6.2E+02 0.013 23.5 10.9 59 343-402 185-243 (269)
475 KOG0292 Vesicle coat complex C 22.7 5.3E+02 0.011 28.4 8.7 128 73-226 655-782 (1202)
476 PF01475 FUR: Ferric uptake re 22.6 1.9E+02 0.0042 22.6 4.8 45 97-141 12-56 (120)
477 KOG4642 Chaperone-dependent E3 22.5 5.9E+02 0.013 23.1 11.1 79 141-223 24-104 (284)
478 cd07153 Fur_like Ferric uptake 21.5 2.7E+02 0.0059 21.5 5.4 14 426-439 17-30 (116)
479 PF14561 TPR_20: Tetratricopep 21.1 3.5E+02 0.0076 20.0 8.7 23 132-154 27-49 (90)
480 PF13934 ELYS: Nuclear pore co 20.8 6.2E+02 0.013 22.7 14.7 104 95-209 79-184 (226)
481 PF09986 DUF2225: Uncharacteri 20.8 6E+02 0.013 22.6 12.1 53 390-442 141-198 (214)
482 COG4003 Uncharacterized protei 20.5 3.4E+02 0.0073 19.6 5.3 43 88-131 26-69 (98)
483 PRK12798 chemotaxis protein; R 20.3 8.6E+02 0.019 24.2 21.1 78 140-219 125-207 (421)
484 PF10155 DUF2363: Uncharacteri 20.3 4.5E+02 0.0099 21.0 11.5 39 150-188 86-124 (126)
485 PRK09857 putative transposase; 20.3 7.3E+02 0.016 23.4 9.7 64 379-443 211-274 (292)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-85 Score=691.75 Aligned_cols=549 Identities=78% Similarity=1.241 Sum_probs=534.2
Q ss_pred chhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 008147 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (576)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (576)
....+...|+.|++.|++++|+++|++|.+.|.++++..++..+...|.+.|.+++|.++|+.|+.||..+|+.++.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 47888999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008147 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (576)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (576)
+.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008147 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (576)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (576)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998755678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 008147 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (576)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (576)
++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008147 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (576)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 423 (576)
+||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcHHHHHhhHHhhhcccCCCccchhhhHHHHHHHHHHHHHcCCCCchH
Q 008147 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503 (576)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 503 (576)
++++|.++|++|.+.|+.||..+|++++++|.++|++|+++.+....|+.+.+...+.|+..|+.+|++|++.|+.||.+
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999988889999999999999999888888999999999999999999999999
Q ss_pred HHHHHHhccCCCCchhHHhHHHHhcCCchhhhhccccccccccccccchhhhhHHHHHHHcCCCccccc
Q 008147 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEVCRELKLEYFTSL 572 (576)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 572 (576)
||..+++|.....+...+..|.+.+++.|...+|..+.++|+++|+.+++|+.+|++|.+.|+.|++++
T Consensus 849 T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCccc
Confidence 999999999888888999999999999999999999999999999877789999999999999999974
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.8e-70 Score=587.10 Aligned_cols=521 Identities=18% Similarity=0.286 Sum_probs=441.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhhhHHH
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQKAI 77 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------------------~~~l~~~~~~~~~~ 77 (576)
...+++.|++++|+++|++|.+.|..|+...+ ...++..+.+.|++
T Consensus 58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~ 137 (857)
T PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL 137 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCh
Confidence 44556899999999999999998764443322 12334455677889
Q ss_pred HHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--------------------------
Q 008147 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-------------------------- 131 (576)
Q Consensus 78 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------------------- 131 (576)
+.|.++|++|++||..+||++|.+|++.|++++|+++|++|...|+.||..||+
T Consensus 138 ~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g 217 (857)
T PLN03077 138 VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217 (857)
T ss_pred HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999888877765
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHH
Q 008147 132 ---------TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (576)
Q Consensus 132 ---------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (576)
.||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred CCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 45555666667777777777765 46677777777777777777788888888887888888888888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008147 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (576)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (576)
++.+|++.|+.+.|.+++..|... |+.||..+|++++.+|++.|++++|.++|+.|.. ||..+|+++|.+|++.
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhC
Confidence 888888888888888888887764 6788888888888888888888888888888753 5667899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 008147 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (576)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (576)
|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|++|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008147 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (576)
Q Consensus 363 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~ 442 (576)
++|. .+|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.+
T Consensus 448 ~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 9987 47889999999999999999999999999986 599999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcHHHHHhhHHhhhcccCCCccchhhhHHH------------HHHHHHHHHHcCCCCchHHHHHHH-
Q 008147 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVL- 509 (576)
Q Consensus 443 ~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~m~~~g~~p~~~~~~~~~- 509 (576)
|..++|+||++|++ +|+++++...|+.+ ..+..+|+.+ |+.+|++|++.|+.||.+||..++
T Consensus 523 ~~~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 99999999999655 77777777777776 5667788874 999999999999999999999987
Q ss_pred hccCCCC---chhHHhHHHHhcCCchhhhhccccccccccccccchhhhhHHHHHHHcCCCcccccccCC
Q 008147 510 GCLQLPY---NADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEVCRELKLEYFTSLSSFL 576 (576)
Q Consensus 510 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~~ 576 (576)
+|++.+. +..+++.|.+.+|+.|+..||.+++.++...|+. ++|.+++++| .++||..+|+.|
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~-~eA~~~~~~m---~~~pd~~~~~aL 663 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL-TEAYNFINKM---PITPDPAVWGAL 663 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHC---CCCCCHHHHHHH
Confidence 7776543 4567889988899999999999755555555554 4899999998 489999999764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-66 Score=561.06 Aligned_cols=509 Identities=20% Similarity=0.301 Sum_probs=398.3
Q ss_pred hhHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 008147 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (576)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------------------~~~l~ 68 (576)
++.++||.++ +.|++++|+++|++|.+.|+.|+..++ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 5677888877 889999999999999998876654433 33455
Q ss_pred HHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (576)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (576)
..+.+.|++++|.++|+.|+.+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 008147 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (576)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 228 (576)
++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||.++|+.+|.+|++.|++++|.++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999999886 468888888888888888888888888888764
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------
Q 008147 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (576)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------- 298 (576)
++.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|++||.+|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 6788888888888888888888888888888888887777777777777777777777777777766542
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHH
Q 008147 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (576)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (576)
++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 244555555555555555555555555555555555555555566666666666666777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H
Q 008147 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (576)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~ 437 (576)
.++|+.+ .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 6666665 467778888888888888888888888888877888888888888888888888888888888887 5
Q ss_pred cCCCCCHHhHHHHHHHHHhcHHHHHhhHHhhhcccCCCccchhhhHHHHHHHHHHHHHcCCCCchHHHHHHHhccCCCCc
Q 008147 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (576)
Q Consensus 438 ~g~~~~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~ 517 (576)
.|+.|+..+|++++++|++ +|.++ +|..++++| +++||..+|..+++.+..+.+
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~-------------------eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLT-------------------EAYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHH-------------------HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 6788888888888887655 33333 355666666 589999999999876666777
Q ss_pred hhHHhHHHHh-cCCchhhh-hccccccccccccccchhhhhHHHHHHHcCCCcccccc
Q 008147 518 ADIRERLVEN-LGVSADAL-KRSNLCSLIDGFGEYDPRAFSLLEVCRELKLEYFTSLS 573 (576)
Q Consensus 518 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 573 (576)
.+..+...+. +.+.|+.. .|..+..+....|+|+ +|..+.+.|++.|++++.+++
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~-~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD-EVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH-HHHHHHHHHHHcCCCCCCCcc
Confidence 7666555433 45667543 3332223444557786 799999999999999998864
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-64 Score=534.44 Aligned_cols=418 Identities=22% Similarity=0.394 Sum_probs=393.5
Q ss_pred HHHHHHhhhHHHHHHHHHhhhCCC-----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008147 66 RFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (576)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 140 (576)
.+...+.+.|++++|+++|+.|+. ++..+++.++.+|.+.|..++|+.+|+.|.. ||..+|+.++.+|++.
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASS 450 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhC
Confidence 334445567999999999999864 4556777888999999999999999999873 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHH
Q 008147 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (576)
Q Consensus 141 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 220 (576)
|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
++|... ++.||..+|+.++.+|++.|++++|.++|+.|.. .++.||..+|+++|.+|++.|++++|.++|++|.+.
T Consensus 531 ~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 531 GIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999875 7899999999999999999999999999999976 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008147 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (576)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 378 (576)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcH
Q 008147 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458 (576)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 458 (576)
.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k-- 766 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER-- 766 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred HHHHhhHHhhhcccCCCccchhhhHHHHHHHHHHHHHcCCCCchHHHHHHHhcc
Q 008147 459 EKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512 (576)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~ 512 (576)
.+. ...|..+|++|++.|+.||..++..+++.+
T Consensus 767 --~G~-------------------le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 767 --KDD-------------------ADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred --CCC-------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 222 225778899999999999999988877543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-62 Score=513.85 Aligned_cols=463 Identities=21% Similarity=0.308 Sum_probs=410.8
Q ss_pred HHHhhhHHHHHHHHHhhhCC-----CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008147 69 NVCKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (576)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 143 (576)
..+...|++++|+++|+.+. .||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 33444555666666665542 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 008147 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (576)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (576)
++|.++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+
T Consensus 175 ~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 175 IDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999997 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008147 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (576)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (576)
.+. ++.||..++++|+.+|++.|++++|.++|+.|.. +|..+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 251 ~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 251 LKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 875 7899999999999999999999999999999964 5679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008147 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (576)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 383 (576)
..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 5899999999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcHHHHH
Q 008147 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKAR 462 (576)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~~~~a~ 462 (576)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++ +|
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G 476 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EG 476 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cC
Confidence 999999999999999999999999999999999999999999999999999986 5999999999999999776 44
Q ss_pred hhHHhhhcccCCCccchhhhHHHHHHHHHHHHHcCCCCchHHHHHHHhccCCCCchhHHhHHHH-hcCCchh-hhhcccc
Q 008147 463 TLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLGVSAD-ALKRSNL 540 (576)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 540 (576)
.+++ |.++|++ .++.||..+|..++..+...++.+....+.+ .+++.|+ ..+|..+
T Consensus 477 ~~~e-------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 477 LLDE-------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred CHHH-------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 4433 3344444 4789999999999855544445554444433 3577775 4566654
Q ss_pred ccccccccccchhhhhHHHHHHHcCCCccccc
Q 008147 541 CSLIDGFGEYDPRAFSLLEVCRELKLEYFTSL 572 (576)
Q Consensus 541 ~~~i~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 572 (576)
..+....|+++ +|.+++++|++.|+++..++
T Consensus 535 ~~~y~~~G~~~-~A~~v~~~m~~~g~~k~~g~ 565 (697)
T PLN03081 535 LNLYNSSGRQA-EAAKVVETLKRKGLSMHPAC 565 (697)
T ss_pred HHHHHhCCCHH-HHHHHHHHHHHcCCccCCCe
Confidence 44444456665 89999999999999765543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-61 Score=506.74 Aligned_cols=501 Identities=17% Similarity=0.259 Sum_probs=446.9
Q ss_pred hhHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 008147 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (576)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (576)
++..+|+.++ +.++++.|.+++..|.+.|..|+ ...+..++..+.+.|++++|.++|+.|+.||.++||++|.+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 4556666655 77889999999999999887664 555666778888999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 008147 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (576)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 182 (576)
++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008147 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (576)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (576)
++|++|. .+|.++||++|.+|++.|+.++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+
T Consensus 280 ~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 280 CVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999996 468999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008147 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (576)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (576)
.|+.|+..+|++||.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999965 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008147 343 SSLMGACSNAKNWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (576)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 421 (576)
++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++++.+|..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999985 699999999999999999999999999999876 478999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHh--cHHHHHhhHHhhhcccC-----------------------CC
Q 008147 422 KDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNS-----------------------GR 475 (576)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~-----------------------~~ 475 (576)
.|+++.|..+++++.+ +.|+ ..+|+.|+++|++ ++++|.++.+.++...- .+
T Consensus 507 ~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h 584 (697)
T PLN03081 507 HKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLH 584 (697)
T ss_pred cCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCC
Confidence 9999999999999875 4554 6799999999987 78888887665432211 12
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCCCchH--------------------HHHHHHhccCCCCchhHHhHHHHhcCCchhhh
Q 008147 476 PQIENKWTSLALMVYREAIVAGTIPTVE--------------------VVSKVLGCLQLPYNADIRERLVENLGVSADAL 535 (576)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (576)
|.....+ .....+..+|.+.|+.||.. .+...+|....+.+..+ ++.|++++|.|++
T Consensus 585 ~~~~~i~-~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i--~i~knlr~c~dch 661 (697)
T PLN03081 585 PQSREIY-QKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPL--QITQSHRICKDCH 661 (697)
T ss_pred ccHHHHH-HHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeE--EEecCCEECCCch
Confidence 2222222 34567788999999999832 23445666667777766 7889999999999
Q ss_pred hcccccccccc
Q 008147 536 KRSNLCSLIDG 546 (576)
Q Consensus 536 ~~~~~~~~i~~ 546 (576)
...++++.+.+
T Consensus 662 ~~~k~~s~~~~ 672 (697)
T PLN03081 662 KVIKFIALVTK 672 (697)
T ss_pred hhHHHHhhhcc
Confidence 98888876653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-27 Score=262.45 Aligned_cols=432 Identities=14% Similarity=0.039 Sum_probs=298.1
Q ss_pred ccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHH
Q 008147 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (576)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (576)
|.+..........+.+.|++++|++.++++.+.. |.+......++..+...|++++|.+.|+++. +.+...|..+
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 403 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3333444444455668888888888888888766 5556666667777777888888888887653 3456677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 008147 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (576)
Q Consensus 99 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 178 (576)
...+...|++++|...++.+.+.. +........++..+.+.|++++|.++++.+.... +.+..++..+...+...|++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCH
Confidence 777888888888888888877654 2234455566677777888888888887777653 44566777777778888888
Q ss_pred HHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008147 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (576)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (576)
++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+.+.|+.++|..+++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID---PKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888887777653 3345566667777777788888888777776542 3455667777777777777777777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 008147 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (576)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (576)
.+...+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..+..++...|++++|...++.+.+.. +.+
T Consensus 558 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 634 (899)
T TIGR02917 558 KAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS 634 (899)
T ss_pred HHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 776654 4555667777777777777777777777776653 2356677777777777777777777777776654 335
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008147 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (576)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 418 (576)
...+..+..+|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 712 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDL 712 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHH
Confidence 5667777777777777777777777776643 3456677777777777777777777777776653 4455666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cHHHHHhhHHhh
Q 008147 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468 (576)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (576)
+...|++++|...++++.+.+ |+..++..+..++.+ ++++|....+..
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777777777777643 333455555555543 455555544433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-27 Score=261.12 Aligned_cols=390 Identities=14% Similarity=0.075 Sum_probs=180.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHH
Q 008147 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAF 112 (576)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 112 (576)
.+.|++++|...|+++.+.. |.+......+...+...|++++|.+.+..+. +.+...++.+...+.+.|++++|.
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555555555555554443 3333333334444444455555555544332 223344444455555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008147 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (576)
Q Consensus 113 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (576)
+.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+... ........++..+.+.|++++|..+++++...
T Consensus 384 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 384 EYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 5555544432 22344444444445555555555555555444321 12223333444455555555555555554433
Q ss_pred CCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 008147 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (576)
Q Consensus 193 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (576)
.+++..++..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++.+...+ +.+..++
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE---PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 13334444445555555555555555555544321 1223334444444555555555555555544433 3334444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc
Q 008147 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (576)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (576)
..+...+.+.|++++|..++.++.+.+. .+...+..++..+...|++++|..+++.+.+.. +.+...|..+..+|.+.
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 4555555555555555555555444332 133344444445555555555555555544432 23344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008147 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (576)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 432 (576)
|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555544332 2234444445555555555555555555544421 223444444455555555555555555
Q ss_pred HHHHHc
Q 008147 433 SQAKED 438 (576)
Q Consensus 433 ~~~~~~ 438 (576)
+.+.+.
T Consensus 693 ~~~~~~ 698 (899)
T TIGR02917 693 KSLQKQ 698 (899)
T ss_pred HHHHhh
Confidence 555443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=2.4e-18 Score=191.19 Aligned_cols=372 Identities=16% Similarity=0.133 Sum_probs=213.9
Q ss_pred cccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHHh
Q 008147 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFF 84 (576)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~ 84 (576)
.|.++.........+.+.|+.++|.+.++++.+.. |.+..+. .....++...|++++|.+.|
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 34444555555556668888888888888888877 5444332 12233456678888888888
Q ss_pred hhCCC---CCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 008147 85 KLVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-- 158 (576)
Q Consensus 85 ~~~~~---~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 158 (576)
++..+ ++.. ............|+.++|+..++.+.+.. +.+...+..+...+...|+.++|++.++++.+...
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 77542 2221 11111122234578888888888888764 44667777788888888888888888887754310
Q ss_pred ----------------C--------------CCHhhH---------------------HHHHHHHHhcCCHHHHHHHHHH
Q 008147 159 ----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGI 187 (576)
Q Consensus 159 ----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~ 187 (576)
. |+.... ......+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 000000 0113345667888888888888
Q ss_pred HHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------------HHHHHHHHhcCChHHHHH
Q 008147 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRARE 255 (576)
Q Consensus 188 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~a~~ 255 (576)
..+.. +.+...+..+...+.+.|++++|...|++..+.... .+....+ ......+.+.|++++|..
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 87753 336677777888888888888888888887764211 1111111 122345667888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (576)
.|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+.....
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHH
Confidence 888888765 556677777888888888888888888888775432 3334443433332 2233444333332211100
Q ss_pred C--------cCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008147 336 S--------VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 336 ~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (576)
. .....+..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|...++++.
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 001112223333444444555555444444432 1223334444444444455555554444444
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.5e-20 Score=186.30 Aligned_cols=305 Identities=14% Similarity=0.087 Sum_probs=174.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCC
Q 008147 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 177 (576)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566777777777776653 33455666666666666777777766666665421111 1345555666666666
Q ss_pred HHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008147 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (576)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (576)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+..... ..+...
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~---------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVE---------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHH----------------------
Confidence 666666666665542 33445556666666666666666666666554210 000000
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 008147 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (576)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (576)
....+..+...+.+.|++++|.+.|+++.+.... +...+..+...+.+.|++++|.++++++.+.+...
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 0112334444555555555555555555544321 33445555555666666666666666665543222
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008147 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (576)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 417 (576)
...+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 2345566666677777777777777766654 345455566677777777777777777766653 567666666665
Q ss_pred HHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 008147 418 ACER---KDDVEVGLMLLSQAKEDGVIPNLV 445 (576)
Q Consensus 418 a~~~---~g~~~~a~~~~~~~~~~g~~~~~~ 445 (576)
.+.. .|+.+++..+++++.+.++.|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5543 446677777777777665555554
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.3e-20 Score=184.91 Aligned_cols=288 Identities=18% Similarity=0.155 Sum_probs=215.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHhcC
Q 008147 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAG 248 (576)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g 248 (576)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.... ...+ ....+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCC
Confidence 3455666777777777776652 2344466666666777777777777777666531 1111 1235667777778888
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 008147 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAF 324 (576)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~ 324 (576)
++++|..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888777653 455677888888888888888888888888776543322 24556777888999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 008147 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (576)
..++++.+.. +.+...+..+...|.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999998865 34566888899999999999999999999987542222467889999999999999999999999884
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-----cHHHHHhhHH
Q 008147 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----RYEKARTLNE 466 (576)
Q Consensus 405 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-----~~~~a~~~~~ 466 (576)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. +.+++..+.+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 677777788899999999999999999999874 6899889888876542 3445554444
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=5.4e-19 Score=196.26 Aligned_cols=388 Identities=11% Similarity=0.042 Sum_probs=300.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCC---HHhHH------------
Q 008147 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFN------------ 96 (576)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~------------ 96 (576)
.+...|++++|+..|++.++.. |.+...+..++.++...|++++|+..|++.. .|+ ...|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4457899999999999999877 7777888888888889999999999998753 222 12222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 008147 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (576)
Q Consensus 97 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 176 (576)
.....+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 22345778899999999999999875 4567778888999999999999999999998764 334566777777764 46
Q ss_pred CHHHHHHHHHHHHhCCCC--------cCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 008147 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (576)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (576)
+.++|...++.+...... .....+..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 789999888765432100 012234556677888999999999999988752 234556778888999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCC
Q 008147 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAGK 319 (576)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~ 319 (576)
++++|...++.+.+.. +.++..+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988765 4566666666667788999999999998875443322221 12345667888999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 008147 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (576)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (576)
.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998872 24556677889999999999999999999999864 45788999999999999999999999998
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 400 MKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 400 m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
..+. .| +..++..+..++...|++++|.++++++.+.
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 8763 45 4556777788899999999999999999875
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=5.2e-19 Score=167.10 Aligned_cols=399 Identities=15% Similarity=0.157 Sum_probs=306.0
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHcCC--------------------------------CCchHHHHHHHHHHHhhh
Q 008147 27 EQLHSYNRLIRQGRISECIDLLEDMERKGL--------------------------------LDMDKVYHARFFNVCKSQ 74 (576)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~ 74 (576)
..+.....+.+.|++.+|.+.-...-+++. .|.....+..++.++...
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 355566777789999999887765554431 234445566677777778
Q ss_pred HHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHH
Q 008147 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-TLITTCAKSGKVDAMFEVF 150 (576)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~ 150 (576)
|++.+|+.+++.+. +..+..|..+..++...|+.+.|.+.|...++. .|+..... .+-..+...|++++|..-|
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 88888888887653 445677888888888888888888888877765 45544333 3334445578888888888
Q ss_pred HHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 008147 151 HEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (576)
Q Consensus 151 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 228 (576)
.+.++. .|. ...|+.|...+-..|++..|+..|++..+. .|+ ...|-.|...|...+.++.|...+.+....
T Consensus 208 lkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 208 LKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 777765 333 456888888888888888888888888765 444 457778888888888888888888887653
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008147 229 PVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307 (576)
Q Consensus 229 ~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 307 (576)
.|+ .+.+..+...|...|.++.|+..+++..+.. +.-+..|+.|..++-..|+..+|.+.+...+..... .....
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam 357 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAM 357 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHH
Confidence 454 4567777778888899999999999888765 445688999999999999999999999998876433 45678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc
Q 008147 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCD 386 (576)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 386 (576)
+.|...|...|.+++|..+|....+-... -....+.|...|-..|++++|...|++.++. +|+ ...|+.+...|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHH
Confidence 88889999999999999999988775422 2457788999999999999999999988874 566 4688899999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008147 387 GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (576)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~ 444 (576)
.|+.+.|++.+.+.+. +.|. ...++.|...|..+|++.+|++-++...+. +||.
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDf 489 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDF 489 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCC
Confidence 9999999999998887 5675 467888999999999999999999999884 4543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.7e-17 Score=173.18 Aligned_cols=394 Identities=12% Similarity=0.037 Sum_probs=274.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCCh
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (576)
-+.+.+.|++++|+..|++.++.. |+ ..++..++..+...|++++|++.+.+.. +.+...|..+..++...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 345568999999999999999876 54 4567777888888899999999998753 45667899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------------CCCCC
Q 008147 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------GIEPN 161 (576)
Q Consensus 109 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~ 161 (576)
++|+.-|......+...+.. ...++..+........+...++.-... ...+.
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998887665443221221 111111111100011111111100000 00000
Q ss_pred H-hhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCc-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-H
Q 008147 162 V-HTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H 234 (576)
Q Consensus 162 ~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~ 234 (576)
. ..+..+... ....+++++|...|++....+ ..| ....|+.+...+...|++++|+..+++.... .|+ .
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~ 365 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVT 365 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcH
Confidence 0 000111100 012367889999999888764 223 3456777778888899999999999988764 344 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008147 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (576)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (576)
..|..+...+...|++++|...|+.+.+.+ +.++.+|..+...+...|++++|...|++..+.... +...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 577788888889999999999999888775 566788888999999999999999999998887533 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCC
Q 008147 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGD 388 (576)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g 388 (576)
.+.|++++|+..+++..+.. +.+...++.+...+...|++++|.+.|++..+.....+. ..++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 89999999999999888764 445778888889999999999999999988765321111 11222223344468
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 389 QLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
++++|..++++.... .|+ ...+..+...+.+.|++++|.+.|+++.+.
T Consensus 523 ~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999988764 454 456888889999999999999999988764
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=4.9e-18 Score=176.44 Aligned_cols=323 Identities=11% Similarity=-0.005 Sum_probs=196.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHH
Q 008147 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGA 111 (576)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 111 (576)
+.+.|++++|+.+++..+... |.+......++......|++++|...|+++. +.+...+..+...+.+.|++++|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 346677777777777766655 5555555555555555667777777776542 34455666666667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (576)
Q Consensus 112 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (576)
...++.+.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 77777766653 344556666666777777777777777666554322 22222222 2356667777777777766554
Q ss_pred CCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCC
Q 008147 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYKMIHKYNIKG 267 (576)
Q Consensus 192 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~ 267 (576)
...++...+..+...+...|++++|...++++.... +.+...+..+...+...|++++ |...|+.+.+.. +.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 322333334444556666777777777777766531 2334455666666777777664 666676666654 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008147 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (576)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (576)
+..++..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...++.+...+.. +...+..+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~ 360 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAA 360 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence 5666667777777777777777777776665432 3445555666666777777777777766655321 2223333455
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 008147 348 ACSNAKNWQKALELYEHMKSI 368 (576)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~~~ 368 (576)
++...|+.++|...|++..+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 666677777777777766653
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.4e-17 Score=173.01 Aligned_cols=358 Identities=9% Similarity=0.001 Sum_probs=161.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChH
Q 008147 34 RLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (576)
+|+++.+++.-.-+|..-.+.--- ..+..-...+...+...|++++|..+++... +.+...+..++.+....|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 455666665555555443332100 0111111122222334455555555554331 222333333344444455555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (576)
+|...++.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 5555555555443 3334445555555555555555555555555432 2234445555555555555555555555544
Q ss_pred hCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 008147 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (576)
Q Consensus 190 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (576)
... +.+...+..+ ..+...|++++|...++.+.... + .++......+...+.+.|++++|...++.+.... +.+.
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~-~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF-A-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC-C-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 332 1112222222 22444555555555555544321 0 1122222333444455555555555555555443 3344
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008147 270 EVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (576)
Q Consensus 270 ~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (576)
..+..+...+...|++++ |...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 445555555555555543 45555555443321 34444455555555555555555555555443 2223344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 008147 346 MGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKS 402 (576)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (576)
..+|.+.|++++|...|+++.+.+ |+. ..+..+..++...|+.++|+..|++..+
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555554432 222 2222233444555555555555555444
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.1e-17 Score=177.55 Aligned_cols=398 Identities=10% Similarity=-0.004 Sum_probs=302.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCChH
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 109 (576)
......|+.++|++++.+..... |.....+..++.++...|++++|.++|++. .+.+...+..+...+...|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34458999999999999998744 556666778888899999999999999984 4556778888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (576)
+|+..++.+.+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+.|+..++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 9999999999874 55666 8888999999999999999999999874 3356667778888889999999999998766
Q ss_pred hCCCCcCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhCCCCCCCCHH-HH----HHHHHHHHhcCCh
Q 008147 190 SKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKACANAGQV 250 (576)
Q Consensus 190 ~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~----~~ll~~~~~~g~~ 250 (576)
. .|+. .....++.... ..+++ ++|++.++.+.... +..|+.. .+ ...+..+...|++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 4 2321 11122222222 22234 77888888887531 1223221 11 1113345677999
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 008147 251 DRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEI 326 (576)
Q Consensus 251 ~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~ 326 (576)
++|+..|+.+.+.+.+ |+ .....+...|...|++++|+.+|+++.+..... .......+..++...|++++|...
T Consensus 254 ~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999887632 22 233335778999999999999999987754221 134456667788999999999999
Q ss_pred HHHHHHCCC-----------CcC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 008147 327 LQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (576)
Q Consensus 327 ~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (576)
++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+...|++++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999987632 122 2345677788999999999999999998764 5668889999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008147 393 TMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (576)
Q Consensus 393 A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~ 445 (576)
|++.+++..+ +.|+ ...+......+...|++++|..+++++++. .|+..
T Consensus 412 A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 412 AENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred HHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 9999999988 4575 566677777899999999999999999984 45544
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=6.6e-19 Score=166.39 Aligned_cols=380 Identities=16% Similarity=0.133 Sum_probs=315.2
Q ss_pred cccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHhHH-H
Q 008147 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFN-M 97 (576)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~-~ 97 (576)
+|+.-+...-.-|.+-..|++++|+.+++.+++.. |.....+..++..+..+|+.+.|.+.|.... .|+.+... .
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~ 189 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSD 189 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcc
Confidence 44444555555677778999999999999999987 7888888899999999999999999998765 45444333 3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcC
Q 008147 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAG 176 (576)
Q Consensus 98 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 176 (576)
+...+...|++++|...+.+.++.. +-=...|..|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHh
Confidence 4455666899999999999888764 233567899999999999999999999999976 344 567889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 008147 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRARE 255 (576)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~ 255 (576)
.+++|...|.+..... +-..+.+..+...|-..|.++.|+..+++..+. .|+ ...|+.|..++-..|++.+|.+
T Consensus 267 ~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----QPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc----CCCchHHHhHHHHHHHhccchHHHHH
Confidence 9999999999988662 334667778888899999999999999999875 333 3489999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (576)
.+.+..... +..+.+.+.|...|...|.+++|..+|....+-... -....+.|...|-+.|++++|+..+++..+.
T Consensus 342 cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-- 417 (966)
T KOG4626|consen 342 CYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI-- 417 (966)
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--
Confidence 999998875 556788999999999999999999999998875322 3457888999999999999999999999885
Q ss_pred CcC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHH
Q 008147 336 SVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITY 412 (576)
Q Consensus 336 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 412 (576)
.|+ ...|+.+...|-..|+.+.|.+.+.+.+..+ |. ...++.|...|-..|+..+|+.-++...+ ++||. ..|
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~ 493 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAY 493 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhh
Confidence 444 4688999999999999999999999998754 44 57889999999999999999999999887 67873 445
Q ss_pred HHHHHH
Q 008147 413 SILLVA 418 (576)
Q Consensus 413 ~~ll~a 418 (576)
..++.+
T Consensus 494 cNllh~ 499 (966)
T KOG4626|consen 494 CNLLHC 499 (966)
T ss_pred hHHHHH
Confidence 555533
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3.9e-16 Score=162.92 Aligned_cols=244 Identities=13% Similarity=0.012 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 211 GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (576)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (576)
+++++|.+.|+.....+ ...| ....+..+...+...|++++|...++...... +.....|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777766532 1223 33456666666777777777777777776654 344566777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008147 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (576)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 369 (576)
..|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++..+..
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777777665432 55667777777777777777777777777654 3345566667777777777777777777776542
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008147 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-I-------TYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (576)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-------~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~ 441 (576)
+.+...|+.+...+...|++++|+..|++..+. .|+. . .+...+..+...|++++|.+++++..+..
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-- 538 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-- 538 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--
Confidence 344667777777777777777777777776653 2321 1 11111222333577777777777776643
Q ss_pred CCH-HhHHHHHHHHHh--cHHHHHh
Q 008147 442 PNL-VMFKCIIGMCSR--RYEKART 463 (576)
Q Consensus 442 ~~~-~~~~~li~~~~~--~~~~a~~ 463 (576)
|+. ..+..+..++.+ ++++|..
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 333 234445544433 3444443
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=4.3e-16 Score=141.33 Aligned_cols=403 Identities=16% Similarity=0.194 Sum_probs=289.4
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH-H--h--------------------------hhHHHH
Q 008147 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV-C--K--------------------------SQKAIK 78 (576)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~--------------------------~~~~~~ 78 (576)
+--+.-.+|..|.+.++.-+|+.|.+.|+ +-+..+..-+.++ | . +.|++
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v- 195 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV- 195 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH-
Confidence 34445567799999999999999999986 3333333333332 1 1 11222
Q ss_pred HHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 79 EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158 (576)
Q Consensus 79 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 158 (576)
|. ++-+..+....+|..+|.++|+-...+.|.+++++..+...+.+..+||.+|.+-+-.. ..++..+|....+
T Consensus 196 -Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 196 -AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred -HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 22 44445566778999999999999999999999999988878999999999997755432 3789999999999
Q ss_pred CCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHH-HHHHHHHHhhC--CCCCC
Q 008147 159 EPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAE--VHPVD 231 (576)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~--~~~~~ 231 (576)
.||..|+|+++++..+.|+++. |.+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++... +..++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998765 56788899999999999999999999999887643 44455444321 11222
Q ss_pred ----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008147 232 ----PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (576)
Q Consensus 232 ----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 300 (576)
.|...|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 355677888999999999999999987775432 1222 23366778888999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccC-C--------HH-----HHHHHHH---
Q 008147 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N--------WQ-----KALELYE--- 363 (576)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~~-----~A~~~~~--- 363 (576)
-|+..+...++++..-.+.++-..+++..++..|...+.....-++..+++.+ . +. -|..+++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998888775544444444444444433 1 00 0111111
Q ss_pred ----HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 364 ----HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (576)
Q Consensus 364 ----~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 435 (576)
++.+. .......+.+.-.+.+.|+.++|.++|..+.+++ ..|......-++.+..+..+...|..+++.|
T Consensus 510 ~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22222 3344556666777778888888888887775543 2233444445666677777777777777777
Q ss_pred HHcCC
Q 008147 436 KEDGV 440 (576)
Q Consensus 436 ~~~g~ 440 (576)
...+.
T Consensus 588 ~~~n~ 592 (625)
T KOG4422|consen 588 SAFNL 592 (625)
T ss_pred HHcCc
Confidence 65443
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=9.9e-16 Score=159.59 Aligned_cols=430 Identities=13% Similarity=0.104 Sum_probs=300.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhH-HHH--HHHHHhcCChH
Q 008147 34 RLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF-NML--MSVCASSKDSE 109 (576)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~~~~~ 109 (576)
...+.|+++.|++.|++.++.. |.+. .++ -++.++...|+.++|+..+++...|+...+ ..+ ...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3349999999999999999987 5553 333 555666677999999999999876644333 333 45788889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (576)
+|+++++.+.+.. +.+...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|+..++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999886 455777788889999999999999999999877 5565555445444545666767999999999
Q ss_pred hCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH------HHHHHHHH-----HhcCC---hHHHHH
Q 008147 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT------IGALMKAC-----ANAGQ---VDRARE 255 (576)
Q Consensus 190 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------~~~ll~~~-----~~~g~---~~~a~~ 255 (576)
+.. +-+...+..+..++.+.|-...|.++..+-..- +.+...- ...+++.- ....+ .+.|+.
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 884 445777788889999999999988877653211 1121111 11111110 01122 344555
Q ss_pred HHHHHHhcC-CCCC-HHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008147 256 VYKMIHKYN-IKGT-PEV----YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (576)
Q Consensus 256 ~~~~~~~~~-~~~~-~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (576)
-++.+...- ..|. ... .--.+-++...|++.++++.|+.+...+...-..+-..+.++|...+++++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 555555421 1122 112 2234556778899999999999999887543445788889999999999999999998
Q ss_pred HHHCC-----CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----------CCC--H-HHHHHHHHHHHcCCCh
Q 008147 330 AKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPT--V-STMNALITALCDGDQL 390 (576)
Q Consensus 330 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~--~-~~~~~li~~~~~~g~~ 390 (576)
+.... ..++......|.-+|...+++++|..+++.+.+... .|| - ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 86643 133444467888899999999999999999886311 122 2 3344566778889999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHH--hcHHHHHhhHHh
Q 008147 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEKARTLNEH 467 (576)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~--~~~~~a~~~~~~ 467 (576)
.+|.+.++++... -+-|......+...+...|.+.+|++.++.+... .|+.. +.......+. ..+.+|..+.+.
T Consensus 433 ~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999998764 2447788888889999999999999999776653 45532 2222322222 257777777777
Q ss_pred hhcccCCCc
Q 008147 468 VLSFNSGRP 476 (576)
Q Consensus 468 ~~~~~~~~~ 476 (576)
.....+.++
T Consensus 510 l~~~~Pe~~ 518 (822)
T PRK14574 510 VISRSPEDI 518 (822)
T ss_pred HHhhCCCch
Confidence 666666554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=6e-16 Score=164.45 Aligned_cols=415 Identities=13% Similarity=0.079 Sum_probs=295.0
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 008147 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121 (576)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 121 (576)
+..+++ .+.+ +.+.....=...+..-.|+.++|++++.... +.+...+..+...+...|++++|..+++...+.
T Consensus 2 ~~~~~~-~~~~--~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS--ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 4333 3333333334555667788999999998754 345556899999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHH
Q 008147 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (576)
Q Consensus 122 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (576)
. +.+...+..+..++...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 5567778888899999999999999999998873 34555 8888999999999999999999999873 33555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhc-CCC
Q 008147 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIK 266 (576)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~ 266 (576)
.+..++...+..++|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 777888888999999999987653 2331 11122222222 12233 6788888888754 112
Q ss_pred CCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---
Q 008147 267 GTPE-VY----TIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--- 337 (576)
Q Consensus 267 ~~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--- 337 (576)
|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+.....
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2211 11 11134556779999999999999987642 433 22235678999999999999999987754221
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 008147 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (576)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (576)
.......+..++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 134566677788999999999999999886421 123 234566778889999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHH--hcHHHHHhhHHhhhcccCCC
Q 008147 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEKARTLNEHVLSFNSGR 475 (576)
Q Consensus 404 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~--~~~~~a~~~~~~~~~~~~~~ 475 (576)
.+-+...+..+...+...|++++|++.++++.+. .|+.. .+-.....+. +++++|..+.+.+....+.+
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 2446778888889999999999999999999884 45542 2222222222 26777777766655444433
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.1e-13 Score=147.59 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=70.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh-hHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHH
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 110 (576)
.+.+.+.|++++|++++.++.+.+ |.+......+..++.. .++ ++|..+++.....++..+..+...+.+.|+.++
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHH
Confidence 466679999999999999999998 5556655566666665 355 888888776556788999999999999999999
Q ss_pred HHHHHHHHHH
Q 008147 111 AFQVLRLVQE 120 (576)
Q Consensus 111 a~~~~~~m~~ 120 (576)
|.++++.+..
T Consensus 266 A~~~L~~~~~ 275 (987)
T PRK09782 266 LQHYLIENKP 275 (987)
T ss_pred HHHHHHhCcc
Confidence 9999988754
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=2.7e-13 Score=144.58 Aligned_cols=192 Identities=12% Similarity=0.013 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008147 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (576)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (576)
+...|..+..++.. +++++|...+.+..... |+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45556666666655 67777777666665543 45444334444445778888888888776554 233344556666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008147 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (576)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 427 (576)
.+.+.|+.++|...+++..+.. +++...+..+...+...|++++|+..+++..+ +.|+...|..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHH
Confidence 7777888888888887777653 22333333333444456888888888887776 45677777777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHH-hHHHHHHHHHh--cHHHHHhhHHhhh
Q 008147 428 GLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVL 469 (576)
Q Consensus 428 a~~~~~~~~~~g~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~ 469 (576)
|...+++..+. .|+.. .++.+-.++.. ++++|....+...
T Consensus 628 A~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 628 AVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888887774 34433 33333333332 4556655544443
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.9e-14 Score=143.78 Aligned_cols=463 Identities=12% Similarity=0.066 Sum_probs=258.6
Q ss_pred ccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCH--HhHH
Q 008147 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL--STFN 96 (576)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~~~ 96 (576)
+..+..-.+.-|.+.-.|++..++.+.+.+....... .-..-+..+++.+...|++++|...|.+.. .++. ..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 3444555555666666666666666666665543210 111123445555666666666666665432 2222 2233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHC----------------
Q 008147 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNA---------------- 156 (576)
Q Consensus 97 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~---------------- 156 (576)
-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34455666666666666666665542 334444444444444443 233344444333332
Q ss_pred ---------------------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCH------hHHHHHHHH
Q 008147 157 ---------------------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDR------VVFNALITA 206 (576)
Q Consensus 157 ---------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~ll~~ 206 (576)
+-.+.+...|.+...+...|+++.|...|...... ...+|. .+-..+...
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 22334444444444444455555555555444332 011111 111122333
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 008147 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (576)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (576)
+-..++.+.|.+.|..+... .|.-+ .|--++.+....+...+|..++......+ ..++..++.+...+.+...+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke----hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE----HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH----CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 33334455555555554443 22221 12222222222345666777776666655 55667777777777777777
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc
Q 008147 286 EFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (576)
Q Consensus 286 ~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (576)
..|.+-|....+. ...+|..+.-.|.+.|.+ .+..++|+++|.++.+.. +-|...-|.+...++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 7777766665443 223566666666665543 234678888888888775 55677778888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008147 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACERKDDVEVGLML 431 (576)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 431 (576)
|++.+|..+|.+..+... ....+|-.+.++|..+|++..|+++|+...+. .-.-+......|..++...|.+.+|.+.
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 899999999988887542 34567888888888889999999988875443 3334667778888888888888888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcHHHHHhhHHhhhcccCCCc---cchhhhHHHHHHHHHHHHHcCCCC
Q 008147 432 LSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP---QIENKWTSLALMVYREAIVAGTIP 500 (576)
Q Consensus 432 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~m~~~g~~p 500 (576)
...+......-....+|..+-+. .-|..+... ..+.. .....-...|..+|.+|...+-.+
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v~k----kla~s~lr~----~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r 802 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALVLK----KLAESILRL----EKRTLEEVLEAVKELEEARRLFTELSKNGDKR 802 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHHHH----HHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88877655444555566554431 112111110 11100 001122235888898888877653
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.7e-13 Score=143.17 Aligned_cols=424 Identities=10% Similarity=0.032 Sum_probs=294.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008147 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135 (576)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 135 (576)
.......-+-+..+.|+++.|+..|.+.. .|+. ..+ .++..+...|+.++|+..+++..... +........+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ 110 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAAR 110 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence 33333333444567799999999999875 3332 233 88888889999999999999988221 333444445567
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHH
Q 008147 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (576)
Q Consensus 136 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 215 (576)
.+...|++++|.++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 8889999999999999999885 335677778889999999999999999999876 5666666445444544666667
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHH---------hcCC
Q 008147 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY--TIAINCCS---------QTGD 284 (576)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~---------~~g~ 284 (576)
|++.++++.... +.+...+..++.+..+.|-...|.++...-...- .+....+ ...+.-.. ...+
T Consensus 188 AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 188 ALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 999999998752 3356677888889999999999988776544321 1111111 00111111 1223
Q ss_pred H---HHHHHHHHHHHhC-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCH
Q 008147 285 W---EFACSVYDDMTKK-GVIPDE-V----FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (576)
Q Consensus 285 ~---~~a~~~~~~m~~~-~~~p~~-~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (576)
+ +.|+.-++.+... +..|.. . ...-.+-++...|+..++++.++.+...+.+....+-..+.++|...+.+
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 3 4455555555542 222322 1 12233447788999999999999999988766677889999999999999
Q ss_pred HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------------CCCCHH-HHHHHH
Q 008147 356 QKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTI-TYSILL 416 (576)
Q Consensus 356 ~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~-~~~~ll 416 (576)
++|..+|+.+.... ..++......|..+|...+++++|..+++.+.+.- ..||-. .+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999987543 13345556789999999999999999999998731 112333 344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cHHHHHhhHHhhhcccCCCcc--chhhhHHHHHHHHHH
Q 008147 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTSLALMVYRE 492 (576)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~ 492 (576)
..+...|++.+|.+.++.+.... .-|..+...+-+++.. ...+|..+.+.....++.... ...+++.+++.=|++
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 77889999999999999997753 4466677777777764 688898888877766654322 223444444443444
Q ss_pred H
Q 008147 493 A 493 (576)
Q Consensus 493 m 493 (576)
+
T Consensus 503 A 503 (822)
T PRK14574 503 M 503 (822)
T ss_pred H
Confidence 3
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.9e-13 Score=136.73 Aligned_cols=427 Identities=12% Similarity=0.052 Sum_probs=269.5
Q ss_pred CcccchhhhHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC------
Q 008147 20 NYAHDVSEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP------ 90 (576)
Q Consensus 20 ~~~~~~~~~~~~~~~l~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 90 (576)
..|..++..+-..-.-. ....+..+++++...-..+ +.++.+...+...+...|++..+..+...+...
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 35566666665554333 3467788999999888877 788888888888888889999998887654321
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008147 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (576)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (576)
-..+|--+.++|-..|++++|...|....+..-..-...+--|...|.+.|+++.+...|+.+.+.. +-+..+...|..
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 2346788899999999999999999888765422124445567899999999999999999998873 335567777777
Q ss_pred HHHhcC----CHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHh----hCCCCCCCCHHHHHHHHH
Q 008147 171 GCAKAG----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN----AEVHPVDPDHITIGALMK 242 (576)
Q Consensus 171 ~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~ll~ 242 (576)
.|...+ ..+.|..++.+..+.- +.|...|-.+...+-...- ..++..|.... ..+ -.+.....|.+..
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~--~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKG--KQIPPEVLNNVAS 460 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcC--CCCCHHHHHhHHH
Confidence 777664 4566666666665542 4455666555555444332 22244443322 221 1244456777777
Q ss_pred HHHhcCChHHHHHHHHHHHhc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------
Q 008147 243 ACANAGQVDRAREVYKMIHKY---NIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI------------ 301 (576)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------ 301 (576)
.+...|+++.|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+..+.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 777777777777777666544 111121 12222344444455555565555555544211
Q ss_pred ---------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHc--------
Q 008147 302 ---------------------PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSN-------- 351 (576)
Q Consensus 302 ---------------------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-------- 351 (576)
.++..++.+...+.....+..|.+-|..+.+.- ..+|+.+..+|...|..
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 122222222223333333333333333222221 12344555555554432
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008147 352 ----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (576)
Q Consensus 352 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 427 (576)
.+..++|+++|.+.++.. +.|...-|.+...++..|++.+|..+|.+..+... -...+|..+...|...|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH
Confidence 234677888888887765 56777778888888889999999999988887632 345567788888888899999
Q ss_pred HHHHHHHHHHc-CCCCCHHhHHHHHHHHH
Q 008147 428 GLMLLSQAKED-GVIPNLVMFKCIIGMCS 455 (576)
Q Consensus 428 a~~~~~~~~~~-g~~~~~~~~~~li~~~~ 455 (576)
|+++|+...+. ....+..+.++|-.++.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 99999887654 44556666666666643
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.3e-14 Score=132.77 Aligned_cols=409 Identities=13% Similarity=0.192 Sum_probs=283.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC----CCC----CHHhHHHHHHHHHhcCCh
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP----TLSTFNMLMSVCASSKDS 108 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~----~~~~~~~li~~~~~~~~~ 108 (576)
-+....+|+..++-+.+...+|+.-.+...++.++.+...+.+|++++... |.- .+...+.+.-.+.+.|.+
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 567788999999999998888888777778888888888999999998653 322 234556666668889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------CHhhHHHHH-----HH
Q 008147 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP------------NVHTYGALI-----DG 171 (576)
Q Consensus 109 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~~~~~~li-----~~ 171 (576)
+.|+..|+...+. .|+..+-..|+-++.-.|+-++..+.|.+|+.....| +....+..| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999988876 5787776667777778899999999999998653222 222222222 12
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCcCHhH---H--HH----------------HHHHHHccCCHHHHHHHHHHHhhCCC
Q 008147 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F--NA----------------LITACGQSGAVDRAFDVLAEMNAEVH 228 (576)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~--~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~ 228 (576)
+-+.+ +.++++-.--++..--+.|+-.. | .+ -...+.+.|+++.|.+++.-..++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 12222222222222222332110 0 00 01236678888888888876655422
Q ss_pred CCCCCHHHHHHH------------------------------------HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 008147 229 PVDPDHITIGAL------------------------------------MKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (576)
Q Consensus 229 ~~~~~~~~~~~l------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (576)
.... ..-+.| .+.....|++++|.+.+++....+..-....|
T Consensus 451 k~~s--aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTAS--AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhhH--HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 1110 011111 01111357888999988888776533222233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc
Q 008147 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (576)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (576)
| +.-.+-..|++++|++.|-++-..- ..+...+..+...|....+..+|++++.+.... ++.|+.+...|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 3445677899999999988765431 226677778888898899999999999877655 577889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 008147 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLML 431 (576)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~-~~~g~~~~a~~~ 431 (576)
|+-..|.+.+-.--+. ++-+..+..-|..-|....-.++|+..|++..- ++|+..-|..++..| .+.|++++|.++
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554432 356788888888889999999999999998765 799999999998766 468999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHh
Q 008147 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (576)
Q Consensus 432 ~~~~~~~g~~~~~~~~~~li~~~~~ 456 (576)
++...+. +..|.....-|+..++.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9998653 67788888888887653
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4e-12 Score=115.99 Aligned_cols=324 Identities=21% Similarity=0.269 Sum_probs=238.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHH-HHHHHHHHHCC----------
Q 008147 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAM-FEVFHEMVNAG---------- 157 (576)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~a-~~~~~~~~~~~---------- 157 (576)
.+.+=|.|+.. ..+|....+.-+++.|.+.|++.+...-..|++.-+ ...++.-| ++-|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34566666664 456889999999999999998888777666655432 22222111 12222222211
Q ss_pred ---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 008147 158 ---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (576)
Q Consensus 158 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 228 (576)
.+.+..++.+||.+.|+.-..+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-- 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-- 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh--
Confidence 2557789999999999999999999999999988778999999999976554332 7788899875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CC
Q 008147 229 PVDPDHITIGALMKACANAGQVDR----AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KG 299 (576)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~ 299 (576)
.+.||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++.. +.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 689999999999999999998765 56778899999999999999999999999888755 4444444432 22
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008147 300 VIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (576)
Q Consensus 300 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 368 (576)
++| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 222 55677888889999999999999887765431 2233 224566777778888889999999999876
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008147 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (576)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 421 (576)
-+-|+..+...++++..-.|+++-.-++|..+...|..-+...-.-++.-+++
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 66788888888999988899988888888888877644444433333333333
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=6.1e-12 Score=125.36 Aligned_cols=369 Identities=14% Similarity=0.144 Sum_probs=277.4
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhh---CCCCCHHhHHHHHHHHH
Q 008147 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCA 103 (576)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~ 103 (576)
.-+--.|.+.-.|++++|..++.++++.. |.+...+..++.++..+|+.+++...+-. +.+.|...|-.+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 33444566667799999999999999998 78888888999999999999999887643 45678899999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH----HHHHHHHhcCCHH
Q 008147 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG----ALIDGCAKAGQVA 179 (576)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~ 179 (576)
+.|++++|.-.|.+.++.. +++...+---...|-+.|+...|.+-|.++.+...+.|..-+. ..++.+...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999886 5566666666788999999999999999999875322332233 3455667778789
Q ss_pred HHHHHHHHHHhC-CCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-------------------------CCCCCCC
Q 008147 180 KAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPD 233 (576)
Q Consensus 180 ~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------------------~~~~~~~ 233 (576)
.|.+.++..... +-..+...++.++..+.+...++.|......+... +.++.++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999999888763 22345567788888888888889888877766541 1112223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008147 234 HITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (576)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (576)
..++ -++-++.+....+....+.......+. ..+...|.-+..+|.+.|++.+|+++|..+......-+...|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 3231 222334455555556666666666663 3356788899999999999999999999999876666778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHH
Q 008147 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITA 383 (576)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~ 383 (576)
.+|...|.+++|.+.+..+.... +.+...-..|...+.+.|+.++|.+++..+.. .+..|+...--.....
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998874 44555667788889999999999999998652 2234444444455566
Q ss_pred HHcCCChhHHHHHHHHH
Q 008147 384 LCDGDQLPKTMEVLSDM 400 (576)
Q Consensus 384 ~~~~g~~~~A~~~~~~m 400 (576)
+.+.|+.++=+.....|
T Consensus 536 l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTL 552 (895)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 77777777655544443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.7e-11 Score=122.27 Aligned_cols=361 Identities=14% Similarity=0.087 Sum_probs=271.6
Q ss_pred HhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (576)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 147 (576)
....|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-.+.-.+ +.|...|..+.....+.|.+++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 344599999999998864 5577899999999999999999998776555443 667899999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHH----HHHHHHHccCCHHHHHHHHHHH
Q 008147 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVDRAFDVLAEM 223 (576)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~ 223 (576)
-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+. ..++.+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999885 4455555566778999999999999999999874222322222 3455677778889999999888
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---------------------------CCCHHHHHHHH
Q 008147 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAI 276 (576)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~li 276 (576)
... .+-..+...++.++..+.+...++.+............ .++..+. -++
T Consensus 307 ~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 307 LSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred Hhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 763 22344555778888899999999998888776655211 2222221 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 008147 277 NCCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (576)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (576)
-++......+....+..-+.+..+ .-+...|.-+..++...|++.+|+.+|..+......-+..+|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 334444444555555555555553 335567888999999999999999999999987666678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHH
Q 008147 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVACERKDDVE 426 (576)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~a~~~~g~~~ 426 (576)
.++|.+.|+...... +.+...--.|-..+-+.|++++|++.+..+. ..+..|+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999998754 3455666677888899999999999999854 2335566666666677788889888
Q ss_pred HHHHHHHHHH
Q 008147 427 VGLMLLSQAK 436 (576)
Q Consensus 427 ~a~~~~~~~~ 436 (576)
+-..+...|+
T Consensus 544 ~fi~t~~~Lv 553 (895)
T KOG2076|consen 544 EFINTASTLV 553 (895)
T ss_pred HHHHHHHHHH
Confidence 8666555554
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.7e-11 Score=110.96 Aligned_cols=259 Identities=15% Similarity=0.046 Sum_probs=145.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 008147 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (576)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (576)
.++-...+.++++.-.+.....|++-+...-+....+.-...+++.|+.+|+++.+..+=--.|..+|+.++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34445556666666666666666544444444444444555666666666666665421111244555555422221111
Q ss_pred hH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 250 VD-RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (576)
Q Consensus 250 ~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (576)
+. .|..++ +.+ +--+.|...+.+.|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+.++
T Consensus 315 Ls~LA~~v~----~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVS----NID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHH----Hhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 111111 111 222345666666666666666666666666665433 34556666666666666666666666
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 008147 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (576)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (576)
.+++-+ +.|-..|-.|..+|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 666654 4456666666666666666666666666666543 3456666666666666666666666666666543 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 409 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
...+..+...+-+.++.++|.+.+++.++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55666666666666666666666665544
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=4.5e-12 Score=125.20 Aligned_cols=290 Identities=10% Similarity=-0.048 Sum_probs=153.6
Q ss_pred hHHHHHHHHHhhhCCC--CC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008147 74 QKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (576)
Q Consensus 74 ~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (576)
.|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+.+....+....+...........+...|+++.|.+.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566666666655431 22 22233334455556666777666666655431222223333455566666777777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHH-HHHH---HHHccCCHHHHHHHHHHHhhC
Q 008147 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALIT---ACGQSGAVDRAFDVLAEMNAE 226 (576)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~---~~~~~g~~~~a~~~~~~~~~~ 226 (576)
+.+.+.. +-+..+...+...+...|++++|.+.+..+.+.++.+ ...+. .-.. .....+..+.+.+.+..+...
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6666654 2345566666666667777777777776666664322 22221 1111 112222222222333333322
Q ss_pred CC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008147 227 VH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (576)
Q Consensus 227 ~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 304 (576)
.. ..+.+...+..+...+...|+.+.|.++++...+......... ...........++.+.+.+.++...+.... |.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~ 333 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KP 333 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-Ch
Confidence 10 0112555666666677777777777777776666532111111 111112223346666677777666554322 33
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008147 305 --VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (576)
Q Consensus 305 --~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 366 (576)
....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666777777777777777743333335666666677777777777777777777654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=5.7e-15 Score=138.51 Aligned_cols=220 Identities=18% Similarity=0.165 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHH
Q 008147 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (576)
Q Consensus 136 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 215 (576)
.+...++.+.|.+.++++...+.. +...+..++.. ...+++++|.++++...+. .++...+..++..+.+.+++++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHH
Confidence 333344444444444444433211 23333333333 3444444444444333322 1233333334444444444444
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (576)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (576)
+.++++.+... ...+++...|..+...+.+.|+.++|.+.+++..+.. +.++...+.++..+...|+.+++.+++...
T Consensus 129 ~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 129 AEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 44444443321 1122333334444444444444444444444444432 223334444444444444444444444333
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008147 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (576)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (576)
.+.. +.|...+..+..++...|+.++|...+++..+.. +.|+.+...+.+++...|+.++|.++.+
T Consensus 207 ~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 207 LKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 3321 1122233333444444444444444444443322 2233333444444444444444444433
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=8.2e-15 Score=137.44 Aligned_cols=257 Identities=18% Similarity=0.153 Sum_probs=95.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHhHHHHHHHHHhcCCh
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 108 (576)
-+.+.+.|++++|++++++.......|.+..+...++.++...+++++|++.++++.. .++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4555578888888888865443332256666666677777777888888888877642 234456666665 677788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008147 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (576)
Q Consensus 109 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (576)
++|..+++...+. .+++..+...+..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888877766554 3455666677777778888888888887766532 345666777777778888888888888888
Q ss_pred HHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 008147 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (576)
Q Consensus 188 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (576)
..+.. +-|....+.++..+...|+.+++.+++....... +.|...+..+..+|...|+.++|..+|+...+.+ +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77762 2246667777777778888887777777665531 3344466677777778888888888887777654 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 268 TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (576)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (576)
|+.+...+...+.+.|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 77777777778888888888877776654
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1e-10 Score=108.16 Aligned_cols=292 Identities=10% Similarity=0.043 Sum_probs=188.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCHhHHHHHHHHHHccCC
Q 008147 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGA 212 (576)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~ 212 (576)
.++......+++..-...+...|++.+...-+....+.-...++++|+.+|+++.+... --|..+|..++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44445556666666666677777665555555555555667778888888888876621 0145666666533222111
Q ss_pred HH-HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008147 213 VD-RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (576)
Q Consensus 213 ~~-~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (576)
+. -|..++. + ....|. |+..+.+-|+-.++.++|...|+...+.+ +....+|+.+..-|....+...|+.-
T Consensus 315 Ls~LA~~v~~-i----dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 315 LSYLAQNVSN-I----DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHH-h----ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 11 1222221 1 233444 56666777777777888888888887776 55567788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 008147 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (576)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (576)
++...+.+.. |...|-.+.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|.+....| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 8887776544 77778888888888888888888888777653 5567788888888888888888888888777665 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTI--TYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
.+...+..|...|-+.++..+|...|++-.+ .|..-+.. ...-|..-+.+.+++++|........+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 4557777788888888888888777776543 23222211 112233455666777776665555443
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=1.6e-09 Score=104.40 Aligned_cols=414 Identities=13% Similarity=0.096 Sum_probs=330.5
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhh---CCCCCHHhHHHHHHH
Q 008147 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSV 101 (576)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~ 101 (576)
...++..|..-+.....++|+.++.+..+. .|.+..+...+ .+..-++.|.+++.+ ..+.+...|.+-...
T Consensus 376 iP~sv~LWKaAVelE~~~darilL~rAvec--cp~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~L 449 (913)
T KOG0495|consen 376 IPRSVRLWKAAVELEEPEDARILLERAVEC--CPQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAKL 449 (913)
T ss_pred CCchHHHHHHHHhccChHHHHHHHHHHHHh--ccchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Confidence 345677899999999999999999999884 36655544443 344557777777654 456788899888888
Q ss_pred HHhcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhc
Q 008147 102 CASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAKA 175 (576)
Q Consensus 102 ~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 175 (576)
--.+|+.+....++.+ +...|+..+...|-.=...|-+.|.+-.+..+....+..|++- -..||+.-...|.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 8889999999888865 4467888999999999999999999999999999999888653 346899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008147 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (576)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (576)
+.++-|..+|...++- .+.+...|......--..|..+....+|++.... ++.....|-.....+-..|+...|..
T Consensus 530 ~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 530 PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 9999999999998875 3456677877777777789999999999998875 34445566666777888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (576)
++..+.+.+ +.+...|-+-+.....+.+++.|..+|.+.... .|+...|..-+..--..+..++|.+++++..+. +
T Consensus 606 il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f 681 (913)
T KOG0495|consen 606 ILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-F 681 (913)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C
Confidence 999998876 568889999999999999999999999998775 456677766666666788999999999998886 3
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008147 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (576)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 415 (576)
+.-...|..+...+-+.++++.|...|..-.+. ++..+..|-.|...--+.|.+-+|..++++..-.+ +-+...|...
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~ 759 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLES 759 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHH
Confidence 444567888889999999999999988876543 34456678888887788899999999999987653 4477889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008147 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (576)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 455 (576)
+..-.+.|+.+.|..+..++++. +..+...|..-|-+..
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 99999999999999998888764 4445555655555543
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.1e-11 Score=121.74 Aligned_cols=281 Identities=13% Similarity=0.063 Sum_probs=130.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCCHHHH
Q 008147 105 SKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKA 181 (576)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A 181 (576)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544331 11222 222233345566666666666666554 33332221 224455666666666
Q ss_pred HHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH------HHHHHHHHHHHhcCChHHHHH
Q 008147 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRARE 255 (576)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~ 255 (576)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66666666553 3344555556666666666666666666665431 111111 112222222222333334444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (576)
+++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 444433221 334444555555555555555555555554442 2222111 1112223344555555555444432
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 008147 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (576)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (576)
+-|......+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 233344444555555555555555555554442 34444444455555555555555555444
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=8.1e-10 Score=102.49 Aligned_cols=415 Identities=13% Similarity=0.090 Sum_probs=260.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHHH
Q 008147 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (576)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~ 114 (576)
++++..|+.+|++.+..+ ..+..+....+..-.+.+.+..|+.+++... +.-...|-..+-.--..|+...|.++
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 556666777777777665 3344444445555556667777777776542 22223444444444556777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC
Q 008147 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NV 193 (576)
Q Consensus 115 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 193 (576)
|++-.+. .|+...|.+.|+.=.+-+.++.|..+++...-. .|++.+|-.....=.++|.+..|..+|+...+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 7776653 677777777777777777777777777776643 477777777777777777777777777776653 10
Q ss_pred -CcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChHHHHHH--------HHHHHh
Q 008147 194 -KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIHK 262 (576)
Q Consensus 194 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~~ 262 (576)
.-+...+.+....=.++..++.|.-+|.-.+.. ++.+ ...|......=-+-|+....... ++.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 111222333333334456667777777666653 2222 33344444333344443333222 233333
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----HH---HhcCCHHHHHHHHHHHHH
Q 008147 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALID-----FA---GHAGKVEAAFEILQEAKN 332 (576)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~-----~~---~~~g~~~~a~~~~~~~~~ 332 (576)
.+ +.|-.+|--.+..-...|+.+...++|++.... ++|-. ..|...|- ++ ....+.+.+.++++...+
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33 556667777777777788888888888888765 44422 11221111 11 246788888888888777
Q ss_pred CCCCcCHHHHHHHH----HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 008147 333 QGISVGIISYSSLM----GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (576)
Q Consensus 333 ~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (576)
. ++-...|+.-+= ..-.++.++..|.+++...+ |..|-..+|...|..=.+.+.++....++++.++.+ +-|
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~ 470 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PEN 470 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHh
Confidence 3 333344444333 33346788888888888766 457888888888888888899999999999988853 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHh--cHHHHHhhHHh
Q 008147 409 TITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNEH 467 (576)
Q Consensus 409 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~--~~~~a~~~~~~ 467 (576)
..+|......-...|+.+.|..+|+-++.. .++.....+.+.|+.=.. -++++..+.+.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 778888888888889999999999988865 344455566666664221 46666666554
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=2.5e-11 Score=119.19 Aligned_cols=283 Identities=9% Similarity=0.015 Sum_probs=214.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHH--HHHHHHHccCCHHHH
Q 008147 140 SGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALITACGQSGAVDRA 216 (576)
Q Consensus 140 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a 216 (576)
.|+++.|.+.+....+.. +++.. +........+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998888766542 22333 333344457899999999999999875 55654333 335678889999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCCHHHHH
Q 008147 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-------VYTIAINCCSQTGDWEFAC 289 (576)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~ 289 (576)
.+.++++.+.. +.+......+...|.+.|++++|.+++..+.+....++.. +|..++.......+.+...
T Consensus 173 l~~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999987652 3456678888999999999999999999999877543221 2333344444455566677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008147 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (576)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 369 (576)
++++.+.+. .+.+......+...+...|+.++|..++.+..+. +++.... ++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 777776554 2347778888999999999999999999998885 3444322 3344456699999999999888764
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
+-|...+..+...+.+.+++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.+++++...
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667788999999999999999999999987 579999999999999999999999999987754
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1e-11 Score=114.04 Aligned_cols=379 Identities=15% Similarity=0.146 Sum_probs=241.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHH----HHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHhHHHHHHHHHhcCChH
Q 008147 36 IRQGRISECIDLLEDMERKGLLDMDKV----YHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~ 109 (576)
.+...+..|++.++-.+..- ++-+.. +...++..+.+.|.+++|+..|+... .||..+--.|+-.+..-|+.+
T Consensus 248 ~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred eehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHH
Confidence 35677888888886555432 122222 22333334566788888888887653 466554333444444567888
Q ss_pred HHHHHHHHHHHcCCCC------------CHHHHHHHH-----HHHHhcCC--HHHHHHHHHHHHHCCCCCCHh-----h-
Q 008147 110 GAFQVLRLVQEAGLKA------------DCKLYTTLI-----TTCAKSGK--VDAMFEVFHEMVNAGIEPNVH-----T- 164 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~------------~~~~~~~li-----~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~-----~- 164 (576)
+..+.|.+|+..-..| +....+.-| .-..+..+ -++++-.-.+++.--+.|+-. +
T Consensus 327 kmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 8888888887532222 222222211 11111111 111111111111111112110 0
Q ss_pred -------H--------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHH--H-----------------------
Q 008147 165 -------Y--------GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL--I----------------------- 204 (576)
Q Consensus 165 -------~--------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l----------------------- 204 (576)
+ -.-..-|.+.|+++.|.+++.-+.+..-+.-...-+.| +
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 0 01123567788888777777666543211111111111 0
Q ss_pred -----------HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 008147 205 -----------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (576)
Q Consensus 205 -----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (576)
......|++++|.+.+.+..... ..-....| .+.-.+-..|++++|++.|-++... +..+..+..
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd--asc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND--ASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc--hHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 01123578999999998887531 11111122 2333567889999999999877654 244567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccC
Q 008147 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (576)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (576)
.+.+.|-...+...|++++.+.... ++.|+..++.|...|-+.|+-.+|.+.+-.--+. ++.+..+...|...|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 8889999999999999999887665 4458889999999999999999999988766554 5778889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008147 354 NWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (576)
Q Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 424 (576)
-+++++..|++..- ++|+..-|..||..|. +.|++.+|+++++...+. ++-|.....-|++.|...|.
T Consensus 641 f~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999998764 4799999998886654 789999999999998775 66788888888888877765
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.3e-09 Score=105.00 Aligned_cols=434 Identities=11% Similarity=0.073 Sum_probs=298.1
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC--------CCCCHHhHHHH
Q 008147 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--------PNPTLSTFNML 98 (576)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~l 98 (576)
.++..|-+|.+..-++.|..+++...+.= |.+..+...-..+--.+|..+...++.++. ..-+...|-.=
T Consensus 408 ~s~dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 408 QSMDLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 34567889999999999999999998753 555555444444445556666655555442 23466677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 008147 99 MSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (576)
Q Consensus 99 i~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 176 (576)
...|-..|..-.+..+....+..|+.-. ..||..-.+.|.+.+.++-|+.+|...++.- +.+...|......--..|
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcC
Confidence 7778888888888888888877776432 4577788888888888888888888887653 446667777777666778
Q ss_pred CHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008147 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (576)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (576)
..++...+|++.... ++-....|......+-..|++..|..++.+..+.. +-+...|-.-+..-.....+++|..+
T Consensus 565 t~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHH
Confidence 888888888888765 34455566666666777788888888888876642 22455677777777888888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (576)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (576)
|.+.... .|+..+|.--+...--.+..++|++++++.++. -|+ ...|-.+...+.+.++++.|...|..-.+. .
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 8877663 566677776667667778888888888887775 233 345666777777888888888877665544 3
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008147 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (576)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 415 (576)
+-.+..|-.|...=-+.|.+-.|..++++..-.+ +.+...|-..|..-.+.|..+.|..+..+..+. .+-+...|.--
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHH
Confidence 4455677777777777888888888888877554 567778888888888888888888887776653 44455667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--hcHHHHHhhHHhhhcccCCCccchhhh
Q 008147 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQIENKW 482 (576)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (576)
|....+.++--.....++ + .+-|..+.-++..++- +++++|.+..+..+.-+ |..+..|
T Consensus 794 I~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d---~d~GD~w 854 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD---PDNGDAW 854 (913)
T ss_pred HHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC---CccchHH
Confidence 766666666444433333 2 2334444444444432 36777777665544333 3344445
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=2.5e-11 Score=119.93 Aligned_cols=290 Identities=11% Similarity=-0.007 Sum_probs=149.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008147 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (576)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 181 (576)
...|+++.|.+.+....+.. |+ ...+-....++...|+.+.|.+.+.+..+....+.....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34678888888877766543 33 3333444566677788888888887776542222222333446667777888888
Q ss_pred HHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHHHH---HhcCChHHHHHHH
Q 008147 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKAC---ANAGQVDRAREVY 257 (576)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-ll~~~---~~~g~~~~a~~~~ 257 (576)
...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . ++...+.. -...+ ...+..+.+.+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 88888877764 3355566677777788888888888877776642 1 12111211 01111 1112222222233
Q ss_pred HHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008147 258 KMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKNQ 333 (576)
Q Consensus 258 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (576)
..+.+.. .+.++..+..+...+...|++++|.+++++..+....+....+ ..........++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 3332221 1135566666666666777777777777666665322111000 01111112234444555555444443
Q ss_pred CCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 008147 334 GISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (576)
Q Consensus 334 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (576)
. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 2222 334445555555555555555555322222234544444555555555555555555554
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.6e-10 Score=101.98 Aligned_cols=284 Identities=15% Similarity=0.178 Sum_probs=173.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCCH
Q 008147 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (576)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 178 (576)
+++.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|.+|.|+.+++.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 468889999999998754 445566677888888999999999999998864 332 2345566778888888
Q ss_pred HHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHhcCChHHHH
Q 008147 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAR 254 (576)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~ 254 (576)
|.|..+|..+.+.+ .--......|+..|-...+|++|+++-+++...+ -.+.. ..|.-+...+....+.+.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 88888888887654 2234566678888888888888888877765431 11111 12344444445556677777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008147 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (576)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (576)
.++.+..+.+ +....+--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7777776655 333344445556666777777777777777666543334555666666777777777776666666553
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHH---cCCChhHHHHHHHHHH
Q 008147 335 ISVGIISYSSLMGACSNAKNWQKALELYE-HMKSIKLKPTVSTMNALITALC---DGDQLPKTMEVLSDMK 401 (576)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 401 (576)
..++. -..+...-....-.+.|...+. ++.+ +|+...+..+|..-. ..|...+.+.+++.|.
T Consensus 280 ~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADA--ELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 33322 2222222222223333333333 3332 466666666665433 2233444444444443
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=8.8e-11 Score=109.24 Aligned_cols=389 Identities=11% Similarity=0.059 Sum_probs=249.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CC-HHhHHHHHHHHHhcCChH
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~ 109 (576)
|...++|++++|++.|.+.++.. |+.+..+......+...|++++..+.-.+..+ |+ +..+..-.+++-+.|++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 44458999999999999999876 77688888888889999999998887665543 32 345666667777788887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHhhHHHHHHHHHh------------
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK------------ 174 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~li~~~~~------------ 174 (576)
+|+.=..-..-.+--.+..+--.+=+.+- ..|.+...+-.+ .+ +-|+.....+....+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 77543222111110111111111111111 111212222111 11 22333333332222211
Q ss_pred -------------cC---CHHHHHHHHHHHHhC---CCCcC---------HhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 008147 175 -------------AG---QVAKAFGAYGIMRSK---NVKPD---------RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (576)
Q Consensus 175 -------------~g---~~~~A~~~~~~m~~~---g~~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (576)
.+ .+..|.+.+.+-... ....+ ..+.......+.-.|+...|.+-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122222222221100 00011 111111112234468888888899888764
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008147 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (576)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 306 (576)
. +.+...|.-+..+|....+.++....|....+.+ +.++.+|..-...+.-.+++++|..=|++....... +...
T Consensus 356 ~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 356 D---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred C---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 2 1222237777788999999999999999999887 667788888888888899999999999998887543 5556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----CHHH--HHH
Q 008147 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----TVST--MNA 379 (576)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~--~~~ 379 (576)
|.-+--+..+.+++++++..|++.+++ ++..+.+|+.....+...++++.|.+.|+..++..... +... --.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 666666667888999999999999887 56678899999999999999999999999988642111 1111 111
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 380 LITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
++.. -=.+++..|++++++..+ +.| ....|.+|...-.+.|+.++|+++|++...
T Consensus 510 ~l~~-qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 510 LLVL-QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred Hhhh-chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 123889999999999987 455 457799999999999999999999998764
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=4e-12 Score=122.78 Aligned_cols=284 Identities=13% Similarity=0.084 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCcCHhHHHHHHHHHHccCCHHHHHHH
Q 008147 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (576)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 219 (576)
+..+|...|..+...- .-+..+...+..+|...+++++|.++|+.+++.. .--+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4567888888855542 3344667778888888899999999998887651 011445666665443322 11122
Q ss_pred H-HHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 220 L-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
+ +.+... -+-...+|.++.++|+-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 222221 12234588888888988999999999998888876 446678888888888888899999988887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008147 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (576)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 378 (576)
... +...|.-+.-.|.+.++++.|+-.|+.+.+.+ +.+.+....+...+.+.|+.++|++++++..... +.|+.+--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 433 44455566667888899999999998888876 4456667777788888899999999999888665 34555555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008147 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (576)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (576)
..+..+...+++++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 566677778889999999999887 4565 4567777788999999998888888887743
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=4.5e-11 Score=105.44 Aligned_cols=274 Identities=13% Similarity=0.122 Sum_probs=150.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHH------hHHHHHH
Q 008147 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLS------TFNMLMS 100 (576)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~------~~~~li~ 100 (576)
++...|.|+ +.+.+.|+++|-+|.+.+ |.....+..++.++.+.|..+.|+++...+. .||.. ..-.|..
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 344444444 567788888888888876 6677778888888888888888888877653 34332 2233445
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcC
Q 008147 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAG 176 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 176 (576)
-|...|-++.|..+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+.. ..|.-|...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 5666677777777777666543 223445566666666667777777766666665433321 13344444444555
Q ss_pred CHHHHHHHHHHHHhCCCCcCHhHH-HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008147 177 QVAKAFGAYGIMRSKNVKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (576)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (576)
+++.|..++.+..+. .|+.+-- -.+.+.....|+++.|.+.++...+.++.+ -..+...|..+|...|+.++...
T Consensus 195 ~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y--l~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 195 DVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY--LSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHhCCHHHHHH
Confidence 666666666666554 2222222 223345556666666666666655542111 12244555566666666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008147 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (576)
.+..+.+....++ .-..+-..-....-.+.|...+.+-... .|+...+..++..
T Consensus 271 fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 271 FLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 6655555432222 2222222222233333444333333332 3555555555554
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.8e-12 Score=120.45 Aligned_cols=283 Identities=13% Similarity=0.086 Sum_probs=206.3
Q ss_pred HHHHHHHHhhhCCC--CC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008147 76 AIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVF 150 (576)
Q Consensus 76 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (576)
...+|+..|.+++. +| ......+.++|...+++++|..+|+.+.+... .-+..+|.+.+--+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46778888887652 22 34555677888888888888888888876531 22566777776544321 222222
Q ss_pred -HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 008147 151 -HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (576)
Q Consensus 151 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 228 (576)
+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+....
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 2233222 446788999999999999999999999888876 34 567888888888888889999999888764
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008147 229 PVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307 (576)
Q Consensus 229 ~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 307 (576)
+.|. ...|..+.-.|.+.++++.|+-.|+++.+.+ +.+.+....+...+.+.|+.++|+.++++....+.+ |+..-
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 2332 3355567778889999999999998888876 556677777788888889999999999988877655 55555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008147 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (576)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (576)
-..+..+...+++++|+..++++++.- +-+..++..+...|.+.|+.+.|..-|..+.+...++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 556666777889999999999888863 4456677888888999999999998888888754333
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=8.4e-10 Score=102.41 Aligned_cols=399 Identities=11% Similarity=0.058 Sum_probs=294.9
Q ss_pred hhHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhh-C-CCCCHHhHHHHHH
Q 008147 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL-V-PNPTLSTFNMLMS 100 (576)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~-~~~~~~~~~~li~ 100 (576)
.++..|-.++ ++.+...|+.++++....- |-...+..-...+--..|++.-|+++|++ | -.|+...|++.|.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~ 182 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK 182 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 4455565565 8999999999999988753 54444444444445567889999999986 3 3799999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHhhHHHHHHHHHhcCCH
Q 008147 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCAKAGQV 178 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~ 178 (576)
.-.+-+..+.|..++++..- +.|++.+|..-...=-+.|.+..+..+|+...+. |- ..+...+.+....=.++..+
T Consensus 183 fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 3699999999998888999999999999998764 20 12233455555555567889
Q ss_pred HHHHHHHHHHHhCCCCcC--HhHHHHHHHHHHccCCHHHHHHH--------HHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 008147 179 AKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDV--------LAEMNAEVHPVDPDHITIGALMKACANAG 248 (576)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (576)
+.|.-+|.-.+.. ++.+ ...|......=-+-|+....... ++.+... -+-|-.+|--.++.-...|
T Consensus 261 ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 261 ERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---NPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---CCCCchHHHHHHHHHHhcC
Confidence 9999999988876 2333 33444444333344554333322 3334333 2456668888888888899
Q ss_pred ChHHHHHHHHHHHhcCCCCCHH--HHHHHH--------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 008147 249 QVDRAREVYKMIHKYNIKGTPE--VYTIAI--------NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG--- 315 (576)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li--------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--- 315 (576)
+.+...++++.....- +|-.. .|...| -.-....+.+.+.++|+..++. ++...+|+..+--.|+
T Consensus 337 ~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 9999999999998753 55211 122221 1123568899999999999884 4445566665555554
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008147 316 -HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (576)
Q Consensus 316 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (576)
+..++..|.+++...+. .-|-..++...|..=.+.+.++.+.+++++.++.+ +-|..+|......=...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 57889999999998765 46778899999999999999999999999999876 557788988888888899999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 395 EVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 395 ~~~~~m~~~g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
.+|.-..... +......|-..|.--...|.++.|..+++++++.
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999988632 1123456777777778899999999999999875
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=4.1e-10 Score=102.61 Aligned_cols=285 Identities=16% Similarity=0.124 Sum_probs=191.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008147 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (576)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (576)
.|++.+|+.+..+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888877766 3334556666677777888888888888887764355666677777777888888888888
Q ss_pred HHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHH
Q 008147 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (576)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~ 257 (576)
.+++.+.+ +.+.........+|.+.|++.....++..+.+.+ .-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88887764 4456677777888888888888888888887652 2222 224566666555555555555566
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 008147 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (576)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (576)
+..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|. ...+ -.+.+.++...-.+..++-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555443 245556666777777777777777777777777666544 1111 23345566666666555554442 33
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008147 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (576)
++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4466677777777777777777777765553 5777777777777777777777777776654
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=2e-09 Score=98.18 Aligned_cols=294 Identities=12% Similarity=0.041 Sum_probs=218.2
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHcc
Q 008147 133 LITTCAK--SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (576)
Q Consensus 133 li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 210 (576)
+..+..+ .|++.+|+++..+-.+.+ +.....|..-..+--..|+.+.+-+++.+.-+.--.++....-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444433 589999999998877776 3345556666677778899999999999888763345556666677788888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcC
Q 008147 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTG 283 (576)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g 283 (576)
|+.+.|..-++++.+.. +...........+|.+.|++.....++..+.+.+.-.+. .+|+.++.-....+
T Consensus 167 ~d~~aA~~~v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 167 RDYPAARENVDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred CCchhHHHHHHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998888887642 345567788889999999999999999999888865543 34666666655555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008147 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (576)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (576)
..+.-...++....+ .+-++..-.+++.-+.+.|+.++|.++..+..+++..|+. ...-.+.+.++...-.+..+
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHH
Confidence 556555566666543 3335666777888888999999999999988888766652 22234566777777666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 364 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
.-.... +.++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|+.+..++.+.|+..+|.++.++....
T Consensus 319 ~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 319 KWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555332 33457788899999999999999999997776 5789999999999999999999999988877643
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.7e-09 Score=101.44 Aligned_cols=286 Identities=9% Similarity=0.015 Sum_probs=226.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 008147 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (576)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
..+.........-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++... .+....+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcchh
Confidence 4455566666777788999999999999998774 667777777788899999988887777777764 344567888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008147 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (576)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (576)
++.--|...|+..+|.+.|.+....+ +.=...|-.+...|.-.|..++|...+...-+.-.. ...-+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 88888889999999999999887765 223468999999999999999999988776553111 1111223334577889
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHcCCChhH
Q 008147 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K--LKPTVSTMNALITALCDGDQLPK 392 (576)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~ 392 (576)
..+.|.+.|.+..... +.|+.+++-+.-.....+.+.+|...|+..... + ...-..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999998874 667888998888888899999999999987621 1 11234568889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 008147 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (576)
Q Consensus 393 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 454 (576)
|+..+++.... .+-+..++.++.-.|...|+++.|.+.|.+.+- +.|+..+...++..+
T Consensus 474 AI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999998874 345888999999999999999999999999875 789988888777653
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=7.6e-10 Score=113.69 Aligned_cols=248 Identities=13% Similarity=0.003 Sum_probs=173.1
Q ss_pred hHHHHHHHHHhhhCC---CCCHHhHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008147 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (576)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 141 (576)
.+++++|+.+|++.. +.+...|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788888888754 234455655554443 2345789999999998876 557788888888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HhHHHHHHHHHHccCCHHHHHHHH
Q 008147 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVL 220 (576)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 220 (576)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998875 3356778888889999999999999999998773 43 223334444566688999999999
Q ss_pred HHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 008147 221 AEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK- 298 (576)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 298 (576)
++..... +|+ ...+..+...+...|+.++|...+..+.... +.+....+.+...|...| +.|...++.+.+.
T Consensus 430 ~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 8887541 243 3346667788889999999999998876543 334455666666777777 4777777776552
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008147 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (576)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (576)
...|....+ .-..+.-.|+.+.+... +++.+.+
T Consensus 504 ~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 112222223 33344556676666655 7777664
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.8e-09 Score=98.42 Aligned_cols=287 Identities=14% Similarity=0.067 Sum_probs=216.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHH
Q 008147 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (576)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (576)
..-+........+-+...+++.+..++.+.+.+.. +++...+..-|..+...|+..+-+.+=.++.+. .|-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34456666666777778889999999999888764 556667777777888888888777777777766 2445778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008147 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (576)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (576)
+.--|...|+..+|.+.|.....-+..+.| .|......|+-.|..+.|...+..+-+.- +.....+--+.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 888888889999999999887654333333 67778888888888898888887665532 11111122234457778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CcCHHHHHHHHHHHHccCCHH
Q 008147 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI--SVGIISYSSLMGACSNAKNWQ 356 (576)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~~li~~~~~~g~~~ 356 (576)
+.+..|.+.|.+.....+ .|+..++-+.-.....+.+.+|..+|+..... +. ..-..+++.|..+|.+.+.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 889999999988877643 26677777766666788899999998876621 10 112446889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008147 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (576)
Q Consensus 357 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 419 (576)
+|+..+++..... +.+..++.++.-.|...|+++.|++.|.+... +.|+..+...++..+
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999988764 67899999999999999999999999999876 789988888877643
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=5.1e-08 Score=94.25 Aligned_cols=301 Identities=16% Similarity=0.199 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------------------HHHHHHHH
Q 008147 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------------------VAKAFGAY 185 (576)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~ 185 (576)
..|++|.+.|.+.|.++.|.++|++..+. ..++.-|+.+.++|+.... ++-.+..|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 34666777777777777777777766554 3344455555555544221 11122222
Q ss_pred HHHHhCC-----------CCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHHHHHHhcC
Q 008147 186 GIMRSKN-----------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACANAG 248 (576)
Q Consensus 186 ~~m~~~g-----------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g 248 (576)
+.+...+ -+.+...|..-+. ...|+..+-...+.+.... +.|. ...|..+.+.|-..|
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcC
Confidence 2222211 0111112221111 1234455555556555542 2221 224667777788888
Q ss_pred ChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------C-------CHHHHH
Q 008147 249 QVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLS 308 (576)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p-------~~~~~~ 308 (576)
+++.|..+|++..+...+.- ..+|..-..+-.+..+++.|+++.++.....-. | +...|+
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 88888888888776544322 345666666667777788888877765432111 1 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc-
Q 008147 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD- 386 (576)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~- 386 (576)
..++.-...|-++....+++.+.+..+.. +.......-.+....-++++.+++++-+..-..|++ ..|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 55555556677777777777777655322 222222222334455677777777776654334554 567776665553
Q ss_pred --CCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 387 --GDQLPKTMEVLSDMKSLGLCPNTITY--SILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 387 --~g~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
.-.++.|..+|++..+ |.+|...-+ ......--..|....|+.+++++..
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3357888889988887 566643322 2222223446777788888887654
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=4.8e-10 Score=111.62 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=157.3
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 008147 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (576)
Q Consensus 88 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (576)
..||.+||..+|.-||..|+.+.|- +|..|.-...+.+...++.++......++.+.+. .|...+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 3577788888888888888888877 8888877777777778888888777777776665 567778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 008147 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (576)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (576)
|..+|...|++.. ++..++ -...+...+...|.......++..+... ++.-||... .+......
T Consensus 89 Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~n---~illlv~e 152 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAEN---AILLLVLE 152 (1088)
T ss_pred HHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHHH---HHHHHHHH
Confidence 8888888887654 222222 1112223333444433333333332221 233444332 22333444
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008147 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (576)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (576)
|.++.+.+++..+....... +... +++-.... ..+++-....+...+ .|++.+|..++.+-..+|+.+.|..+
T Consensus 153 glwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 55555555554443322111 1111 12222221 222332222222222 46777777777777777777777777
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 008147 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (576)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 389 (576)
+.+|++.|++.+.+-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.++|.
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777777777766666655 66677777777777777777777777777666666554
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=7.7e-11 Score=117.13 Aligned_cols=273 Identities=15% Similarity=0.140 Sum_probs=193.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008147 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (576)
Q Consensus 113 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (576)
.++..+...|+.|+.+||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34566777888999999999999999999988888 8888887777778888898888888888877765
Q ss_pred CCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCHHH
Q 008147 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEV 271 (576)
Q Consensus 193 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 271 (576)
.|...+|..|..+|...||+.. |+...+ ....+...+...|.-.....++..+.- .+..||.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-- 142 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-- 142 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH--
Confidence 6778889999999999988765 222211 112233444555555555555444321 2223332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008147 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (576)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (576)
...+......|.++.+++++..+...... |-.+ +++-+.... .+++-..+.+.... .|++.+|.+++++-
T Consensus 143 -~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 143 -ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 23444455667788888887776543221 1111 233333222 23333333333332 58999999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008147 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (576)
Q Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 424 (576)
...|+.+.|..++.+|.+.|++.+..-|..|+.+ .+...-+..+++.|.+.|+.|+..|+...+..|...|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999999888888876 78888899999999999999999999998888877554
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1.5e-09 Score=99.21 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008147 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (576)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (576)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3455566666777777777777777666554 444566666777777777777777777777665432 44556666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 008147 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (576)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (576)
+...|++++|...+.+...... ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777765421 2234456666777777888888888887777643 3345667777777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 393 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877664 234555666666777777888888777766654
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.7e-09 Score=98.69 Aligned_cols=194 Identities=16% Similarity=0.101 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 209 (576)
+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3333444444444444444444443321 1123333444444444444444444444444332 1222333333444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (576)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (576)
.|++++|.+.+++..... ........+..+...+...|++++|...+....... +.+...+..+...+...|++++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444443210 001111223333334444444444444444443332 222333444444444444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (576)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (576)
..+++..+. ...+...+..+...+...|+.++|..+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444333 11122333333333334444444444333
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=1.2e-09 Score=112.31 Aligned_cols=234 Identities=11% Similarity=0.059 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008147 211 GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (576)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (576)
++.++|.++|++..+. .|+ ...+..+..++. ..+++++|...++++.+.+ +.+...+..+...+.
T Consensus 275 ~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4577888888887764 343 334444444333 2234678888888887776 566777777877888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 008147 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (576)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (576)
..|++++|...|++..+.+.. +...+..+...+...|++++|...++++.+..+. +...+..++..+...|++++|..
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH
Confidence 888888888888888776533 4566777777888888888888888888776533 22233334444556788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008147 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQAKED- 438 (576)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~- 438 (576)
.+++..+...+.+...+..+...+...|++++|...+.++... .|+..+ .+.+...+...| +++...++.+.+.
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 8888765432224455667777788888888888888876552 455443 344444556666 4677766666543
Q ss_pred CCCCCHHhHHHHHHHHH
Q 008147 439 GVIPNLVMFKCIIGMCS 455 (576)
Q Consensus 439 g~~~~~~~~~~li~~~~ 455 (576)
.-.+.......++.++.
T Consensus 504 ~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAH 520 (553)
T ss_pred hHhhcCchHHHHHHHHH
Confidence 23333333445555443
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.1e-07 Score=87.42 Aligned_cols=417 Identities=15% Similarity=0.121 Sum_probs=240.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHH--HHHHH--H
Q 008147 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC--A 103 (576)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~--~ 103 (576)
-....|....+|++++|.+...+++..+ |++......-.-...+.+.+++|+.+.+.-+.. .+++. +=.+| .
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 3445566778999999999999999977 666655544455567788999999776654321 11222 23444 3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHH
Q 008147 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAF 182 (576)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 182 (576)
+.+..++|+..+.-.. +.|..+...-...+.+.|++++|.++|+.+.+.+.+- +...-..++.+-. ...+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH
Confidence 6789999999888222 2234466667788899999999999999998764321 1111112211110 00111
Q ss_pred HHHHHHHhCCCCcCHhHHHHHH---HHHHccCCHHHHHHHHHHHhh--------CCCC---CCCCHH-HHHHHHHHHHhc
Q 008147 183 GAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDHI-TIGALMKACANA 247 (576)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~--------~~~~---~~~~~~-~~~~ll~~~~~~ 247 (576)
.+......| ..+|..+. -.+...|++.+|+++++.... ...+ +..+.. .-..+.-.+-..
T Consensus 163 ----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred ----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 111111122 22333333 234556777777777766511 1000 000000 112334455567
Q ss_pred CChHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHh------------------------------------------
Q 008147 248 GQVDRAREVYKMIHKYNIKGTPE----VYTIAINCCSQ------------------------------------------ 281 (576)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~------------------------------------------ 281 (576)
|+.++|..++....+.+. +|.. .-|.|+..-..
T Consensus 238 Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666652 2221 11112111000
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHH
Q 008147 282 ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (576)
Q Consensus 282 ---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (576)
.+..+.+.++-.... +..|. ..+..++..+.+ .....++..++...-+....-...+.-..+......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 011111111111111 12233 233444443322 2246777777777766654444556677778889999999
Q ss_pred HHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHH----HHHHHHHHHhc
Q 008147 357 KALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTIT----YSILLVACERK 422 (576)
Q Consensus 357 ~A~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~----~~~ll~a~~~~ 422 (576)
.|.+++. .+.+.+..|- +...++..+.+.++-+.|..++.+.... .-.+.... +.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 5655554444 5556777777877777777777766432 01222233 33333444678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cHHHHHhhHHhh
Q 008147 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHV 468 (576)
Q Consensus 423 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~a~~~~~~~ 468 (576)
|+-++|..+++++.+.. .+|..+...++.+|++ +.++|..+...+
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 99999999999999853 5788899999999998 778887777654
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.32 E-value=4.3e-07 Score=88.27 Aligned_cols=388 Identities=14% Similarity=0.134 Sum_probs=191.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCChHHHHH
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQ 113 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~ 113 (576)
..|+-++|.......++.+ +-+..++..++-+....+++++|++.|... .+.|...|.-+--.-++.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 3455555555555444443 233333444444445555555555555432 23344444444444444455555444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHH------HHHhcCCHHHHHHHHH
Q 008147 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALID------GCAKAGQVAKAFGAYG 186 (576)
Q Consensus 114 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~------~~~~~g~~~~A~~~~~ 186 (576)
.-....+.. +.....|..+..++.-.|+...|..+.+...+.. -.|+...+..... ...+.|..+.|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 444444332 2233445555555555555555555555555432 1233333322221 2234455555554444
Q ss_pred HHHhCCCCcCHhHHH-HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHHHhc
Q 008147 187 IMRSKNVKPDRVVFN-ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQVDRAR-EVYKMIHKY 263 (576)
Q Consensus 187 ~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~-~~~~~~~~~ 263 (576)
.-... ..|...+. .-...+.+.++.++|..++..++.. .||...|.-.+..+. +..+.-++. .+|....+.
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 33221 11222221 1223344555556666655555543 344444433332222 222222222 333333222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-----
Q 008147 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN----QG----- 334 (576)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~----- 334 (576)
- +.....-..=++......-.+..-+++..+.+.|+++ ++..+...|-.....+-..++...+.. .|
T Consensus 284 y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 Y-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred C-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 1 0000000000011111112233445556666667653 344444444332222212222222211 11
Q ss_pred -----CCcCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 008147 335 -----ISVGII--SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (576)
Q Consensus 335 -----~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (576)
-+|... ++-.++..|-+.|+++.|....+..+++ .|+. ..|..-.+.+...|.+++|...+++..+.+ .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 134444 3445778888999999999999998875 4654 455566688889999999999999988764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008147 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (576)
Q Consensus 407 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (576)
||...-.--..-..+..+.++|.++.....+.|.
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5665555666777889999999999999988775
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=4.8e-10 Score=99.06 Aligned_cols=227 Identities=14% Similarity=0.080 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHH
Q 008147 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKAC 244 (576)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~ll~~~ 244 (576)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+...|+.++.+-... .|-.+| ...+.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHH
Confidence 34445555555555555555554444 344444545555555555555555555544432 222222 22333444
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (576)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (576)
-..++.++|.++++...+.. +.+......+...|.-.++++.|+..++++++.|+. +...|..+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 44555555555555554443 333344444444455555555555555555555544 4444544444455555555555
Q ss_pred HHHHHHHHCCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008147 325 EILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 325 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (576)
..|.+....-..|+ ..+|..|.......||+..|.+.|+-...++ ..+...+|.|.-.-.+.|+.++|..++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 55554443322121 2234444444444555555555555444332 2233444444444445555555555554443
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.8e-12 Score=82.64 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008147 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (576)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 421 (576)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.5e-07 Score=84.86 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC
Q 008147 29 LHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90 (576)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 90 (576)
.+.++.+.+...+..|.+-|...++... .+.+.......+..+...++-+.|+.....+|+.
T Consensus 47 ~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t 126 (564)
T KOG1174|consen 47 LYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT 126 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc
Confidence 3445566677778888888877665421 1233333444455556667778888888777643
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.4e-11 Score=80.80 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=33.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc
Q 008147 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (576)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 209 (576)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2e-07 Score=87.46 Aligned_cols=152 Identities=12% Similarity=0.092 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHH
Q 008147 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (576)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (576)
.|+.-.|..-|+........++. .|-.+..+|....+..+....|....+.+ +-++.+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444443332221 13333334444444444444444444443 22333444444444444444444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
|++.++.. +-+...|-.+..+..+.+++++++..|++..+. ++--+..|+.....+..+++++.|.+.++..++
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 44444432 223333334444444444444555555444432 222334444444444444555555544444443
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=8.3e-08 Score=95.41 Aligned_cols=289 Identities=14% Similarity=0.137 Sum_probs=146.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHH-HHHHHHHc-----c
Q 008147 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQ-----S 210 (576)
Q Consensus 137 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~-----~ 210 (576)
+...|++++|++.+..-.+. +.............+.+.|+.++|..+|+.+.+.+ |+...|. .+..+..- .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34455555555555443322 11122333444445555555555555555555542 3333332 22222211 1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (576)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (576)
.+.+...++++++... -|.......+.-.+..-..+ ..+..++..+...|+| .+++.+-..|.......-..
T Consensus 91 ~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 2344455555555432 12111111111111111111 2333444455555543 34555555555444444444
Q ss_pred HHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccC
Q 008147 290 SVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (576)
Q Consensus 290 ~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (576)
.++...... + -.|.. +++..+...|...|++++|++++++.++.. +..+..|..-...+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence 444443221 0 12333 344555666777777777777777777764 223566777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCH
Q 008147 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TY--SILLVACERKDDV 425 (576)
Q Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~ll~a~~~~g~~ 425 (576)
++.+|.+.++...+.+ .-|...-+-.+..+.++|+.++|.+++...-+.+..|-.. .| .-...+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7777777777777654 3455555666666777777777777777766555433221 12 3334677777777
Q ss_pred HHHHHHHHHHHH
Q 008147 426 EVGLMLLSQAKE 437 (576)
Q Consensus 426 ~~a~~~~~~~~~ 437 (576)
..|++-|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 777766655544
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2.9e-09 Score=94.27 Aligned_cols=229 Identities=11% Similarity=0.031 Sum_probs=116.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 008147 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (576)
Q Consensus 97 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 176 (576)
-+.+.|.+.|-+.+|...|+.-.+. .|-+.||..|-.+|.+...+..|+.++.+-.+.- +-++....-+.+.+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHH
Confidence 3445555555555555555555544 3344455555555555555555555555554431 222223334444555555
Q ss_pred CHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008147 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (576)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (576)
+.++|.++|+...+.. +.++.....+...|.-.++.+-|+..++++.+- |+ .+...|+.+.-+|.-.++++-++.-
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM--GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh--cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 5555555555555432 233444444444555555555555555555543 21 2333455555555555555555555
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008147 257 YKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (576)
Q Consensus 257 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (576)
|++....-..|+ ..+|..+.......|++..|.+.|+-.+..+.. +...++.+.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 555544332222 234555555555556666666666555554432 4445555555555566666666666555443
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=9.2e-07 Score=79.65 Aligned_cols=434 Identities=13% Similarity=0.100 Sum_probs=248.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCCh
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (576)
..-++.+.++..|+.+++--...+- .....+..-++..+...|++++|...+..+. .++...+-.+.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5566788889999999886654442 1222333334444566789999998887653 45666666666666667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (576)
Q Consensus 109 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (576)
.+|.++-... +.++..-..|+....+.++-++-..+.+.+.. +..---+|.+..-..-++++|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776543 23344444555666677887777777766653 2233445555555556788889998888
Q ss_pred HhCCCCcCHhHHHHHH-HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc--CCh---------------
Q 008147 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQV--------------- 250 (576)
Q Consensus 189 ~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~--------------- 250 (576)
... .|+-...|.-+ -+|.+..-++-+.++++-...+ ++.+....|.......+. |+.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 766 45656666544 3456666677777777666553 223333333332222221 111
Q ss_pred ------------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008147 251 ------------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (576)
Q Consensus 251 ------------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (576)
+.|++++--+.+. -+..-..|+-.|.+.++..+|..+.+++.- ..|-......++.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 1122222111111 123445566678899999999988877543 2343333333333
Q ss_pred HH-Hh----cCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008147 313 FA-GH----AGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (576)
Q Consensus 313 ~~-~~----~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 386 (576)
+. .+ ...+.-|.+.|+..-.++..-|.. --.++...+.-..++++.+..+..+...-...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 21 11 123455666666655555433322 22344445555567788888888777654344444444 7889999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcHHHHHhhH
Q 008147 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465 (576)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~a~~~~ 465 (576)
.|.+.+|.++|-+.....+ -|..+|.+++ ++|.+.++++.|+.++- +..-..+....-.+| +..--+|++..
T Consensus 406 tgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlI---An~CYk~~eFy 478 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLI---ANDCYKANEFY 478 (557)
T ss_pred hcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHH---HHHHHHHHHHH
Confidence 9999999999987765333 3566776655 67788999998877664 433233333333333 22112355555
Q ss_pred HhhhcccCCC--ccchhhhHHH---HHHHHHHHHH
Q 008147 466 EHVLSFNSGR--PQIENKWTSL---ALMVYREAIV 495 (576)
Q Consensus 466 ~~~~~~~~~~--~~~~~~~~~~---a~~~~~~m~~ 495 (576)
=+.+.|+... .+.++.|... +.-+|+.+..
T Consensus 479 yaaKAFd~lE~lDP~pEnWeGKRGACaG~f~~l~~ 513 (557)
T KOG3785|consen 479 YAAKAFDELEILDPTPENWEGKRGACAGLFRQLAN 513 (557)
T ss_pred HHHHhhhHHHccCCCccccCCccchHHHHHHHHHc
Confidence 5555555431 2234455442 3334544433
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=7.4e-08 Score=95.75 Aligned_cols=289 Identities=13% Similarity=0.115 Sum_probs=162.0
Q ss_pred HHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C
Q 008147 70 VCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----G 141 (576)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g 141 (576)
++...|++++|++.++... .............+.+.|+.++|..+++.+++++ +.+..-|..+..+..-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 4455566666666665432 1223445555667777788888888888777775 33344444444444222 2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHH
Q 008147 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (576)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 220 (576)
+.+...++++++...- |.......+.-.+..-..+ ..+...+..+...|+| .+|+.|-..|......+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 4566677777776542 3333222222222221222 2445555666667754 34555555555555555555555
Q ss_pred HHHhhCC------------CCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008147 221 AEMNAEV------------HPVDPDH--ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (576)
Q Consensus 221 ~~~~~~~------------~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (576)
....... ..-+|.. .++..+...|...|++++|.++.+...+.. +..+..|..-...+-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 5443210 0112333 233455666667777777777777777664 334666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH--------HHHHHHHHHHccCCHHHH
Q 008147 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII--------SYSSLMGACSNAKNWQKA 358 (576)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A 358 (576)
+|.+.++.....+.. |-..-+..+..+.++|+.++|.+++....+.+..|... .......+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777777777766554 65666666666677777777777777665554322111 113345666677777777
Q ss_pred HHHHHHHH
Q 008147 359 LELYEHMK 366 (576)
Q Consensus 359 ~~~~~~~~ 366 (576)
++.|..+.
T Consensus 325 Lk~~~~v~ 332 (517)
T PF12569_consen 325 LKRFHAVL 332 (517)
T ss_pred HHHHHHHH
Confidence 66665554
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=6.8e-06 Score=80.00 Aligned_cols=454 Identities=11% Similarity=0.155 Sum_probs=283.7
Q ss_pred hhhHHHHHHHH--hcCChhH-HHHHHHHHHHcCCCCchHHHHHHHH-HH------Hhh-------hHHHHHHHHHhhhCC
Q 008147 26 SEQLHSYNRLI--RQGRISE-CIDLLEDMERKGLLDMDKVYHARFF-NV------CKS-------QKAIKEAFRFFKLVP 88 (576)
Q Consensus 26 ~~~~~~~~~l~--~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~-~~------~~~-------~~~~~~A~~~~~~~~ 88 (576)
..++.+|-.+| +.|.+.. -..+|++.++.-. ......+..+- +. |-. ++-++.++..+.+||
T Consensus 24 p~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp-~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmp 102 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGSPDKQRNLLYERALKELP-GSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMP 102 (835)
T ss_pred chhHHHHHHHHHHHccCChHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 45788899998 5666554 4567778777542 22233333221 11 111 122334444444444
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 008147 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (576)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (576)
..|-..+.....++++......|+..+.. -+......|...+......+-++-+..++++.++. ++..-+-
T Consensus 103 ----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 103 ----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred ----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 56888888888999999999999887754 22334567888888888889999999999999854 4555777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCcCHhHHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCCH--HH
Q 008147 168 LIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDH--IT 236 (576)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~--~~ 236 (576)
.|..+++.+++++|-+.+...... ..+.+-..|..+-...++.-+.- ....+++.+.. .-+|. ..
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~----rftDq~g~L 250 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR----RFTDQLGFL 250 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc----cCcHHHHHH
Confidence 888899999999999999887643 12445566776666666554332 23334444433 24553 46
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------cC------CHHHHHHHHHH
Q 008147 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------TG------DWEFACSVYDD 294 (576)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g------~~~~a~~~~~~ 294 (576)
|.+|.+-|.+.|.+++|..++++..+.-.. ..-++.+-+.|.+ .| +++-...-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 889999999999999999999887765322 1222222222221 11 12223333444
Q ss_pred HHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------CHHHHHHHHHHHHccCCHHH
Q 008147 295 MTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GIISYSSLMGACSNAKNWQK 357 (576)
Q Consensus 295 m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 357 (576)
+..... +.++..|..-+.. ..|+..+-...+.++.+. +.| -...|..+...|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 433211 1133334333332 356677777788877664 122 23468889999999999999
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----------CCC-------CHHHHHHHHH
Q 008147 358 ALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLG----------LCP-------NTITYSILLV 417 (576)
Q Consensus 358 A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------~~p-------~~~~~~~ll~ 417 (576)
|..+|++..+...+.- ..+|..-...=.++.+++.|+++.++..... -.| +...|+.+++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999987543221 3455555556667889999999988875321 111 2234666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcHHHHHhhHHhhhcccCC-----CccchhhhHH--------
Q 008147 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG-----RPQIENKWTS-------- 484 (576)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~-------- 484 (576)
.--..|-++....+++++++..+.....+.|.-+- +++-.-.+++.+.+..+ -|..-..|+.
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmf-----LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF-----LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 66677899999999999998766544433332211 22333334444444332 1334456765
Q ss_pred -------HHHHHHHHHHHcCCCCchH
Q 008147 485 -------LALMVYREAIVAGTIPTVE 503 (576)
Q Consensus 485 -------~a~~~~~~m~~~g~~p~~~ 503 (576)
.|..+|++.++ |+.|...
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 38999999988 7777754
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=3e-06 Score=82.57 Aligned_cols=394 Identities=12% Similarity=0.083 Sum_probs=259.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHH
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~ 113 (576)
..+++...++..+.+++.. |......+..+-.+...|+-++|........ ..+.+.|..+.-.+-...++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 5688888888888888843 5555555555555566788888988877654 3566889999888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 008147 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (576)
Q Consensus 114 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 192 (576)
.|+.....+ +.|...+.-+.-.-+..|+++-.......+.+.. +.....|..+..++.-.|+...|..+.+...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999876 6677788877777788889888888888777663 3355678888888889999999999999988764
Q ss_pred CCcCHhHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 008147 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (576)
Q Consensus 193 ~~p~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (576)
-.|+...+.-.. ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++..+..++ +
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-P 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-P 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-c
Confidence 246655554332 2345678888888877654332 22222233445667889999999999999999874 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008147 267 GTPEVYTIAINCCSQTGDWEFAC-SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (576)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (576)
.+..-|..+..++.+-.+.-++. .+|....+.-.. .......=+.......-.+....++..+.+.|+++ ++..+
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 34444444555554343444444 666665543211 11111111112222233445556677777887654 44445
Q ss_pred HHHHHccCCHHHHHHH----HHHHHhCC----------CCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 008147 346 MGACSNAKNWQKALEL----YEHMKSIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (576)
Q Consensus 346 i~~~~~~g~~~~A~~~----~~~~~~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (576)
...|-.....+-..++ ...+...| -+|+...|. .++..|-+.|+++.|...++..... .|+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchH
Confidence 5444332221111111 11111111 156666665 5677888999999999999998874 6765
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008147 410 I-TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (576)
Q Consensus 410 ~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~ 445 (576)
+ .|..=.+.+.+.|++++|..++++..+.. .||..
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 4 45555688999999999999999998754 34443
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=3.5e-06 Score=75.99 Aligned_cols=400 Identities=11% Similarity=0.083 Sum_probs=241.7
Q ss_pred hhHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 008147 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (576)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (576)
.++..|-+.+ +.|++++|+..+.-+.+....|.. +...+.-...-.|.+.+|..+-.+.++ ++-.-..+...--+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e--l~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE--LGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc--cchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 3666776666 899999999999988876643332 222333333456889999998877663 33344445555566
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-HHHHhcCCHHHHHH
Q 008147 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFG 183 (576)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~ 183 (576)
.++-++-..+.+.+... ..---+|.......-.+++|++++.+.... .|.-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 77777777766665532 122234444545555688899999988866 34444444433 35667777777777
Q ss_pred HHHHHHhCCCCcCHhHHHHHHHHHHcc--CCHH---------------------------------HHHHHHHHHhhCCC
Q 008147 184 AYGIMRSKNVKPDRVVFNALITACGQS--GAVD---------------------------------RAFDVLAEMNAEVH 228 (576)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~---------------------------------~a~~~~~~~~~~~~ 228 (576)
++.-..+. ++-+....|.......+. |+.. .|++++--+..
T Consensus 207 vl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--- 282 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--- 282 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---
Confidence 77766654 222334444333322222 2211 11111111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008147 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT-------IAINCCSQTGDWEFACSVYDDMTKKGVI 301 (576)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (576)
.-|. .-..|+--|.+.+++.+|..+.+.+. +.++.-|- ++..-........-|...|.-.-+.+..
T Consensus 283 -~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 283 -HIPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred -hChH--hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 0121 22234455788999999998876553 22223222 2222222223455667777666555443
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 008147 302 PDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN-A 379 (576)
Q Consensus 302 p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 379 (576)
-|.. --.++..++.-..++++.+-++..+..--...|...+ .+..+++..|.+.+|+++|-++....+ .|..+|. .
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~ 433 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSM 433 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHH
Confidence 3321 2233444555566788888888888776444444444 478899999999999999988875443 3455555 5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 008147 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL-LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (576)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 454 (576)
|..+|.+++.++.|.+++-++.. +.+..+...+ ..-|.+.+.+--|-+.|..+.. .+|++.-|..=-.+|
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 66789999999999887765542 3344444444 4789999999999999998877 567766665443343
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=1.4e-07 Score=92.57 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 008147 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----NV- 193 (576)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 193 (576)
..+...|...|...|+++.|..++....+. |. .|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555667777777777777777665543 11 11211 2233445566666666666666665431 10
Q ss_pred Cc-CHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 008147 194 KP-DRVVFNALITACGQSGAVDRAFDVLAEM 223 (576)
Q Consensus 194 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (576)
.| -..+++.|..+|.+.|++++|...+++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 11 1234555555666666666665555544
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=7.8e-08 Score=94.43 Aligned_cols=197 Identities=18% Similarity=0.159 Sum_probs=124.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCCH-H
Q 008147 240 LMKACANAGQVDRAREVYKMIHKY-----N--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGV-IPDE-V 305 (576)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~~-~ 305 (576)
+...|...+++.+|..+|+.+... | .+.-..+++.|...|.+.|++++|...+++..+ .+. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 555566666666666666555331 1 111133455555666666666666655554432 111 1122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCc----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C--CC
Q 008147 306 FLSALIDFAGHAGKVEAAFEILQEAKNQ---GISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI-----K--LK 371 (576)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~ 371 (576)
.++.+...++..+++++|..+++...+. -+.+ -..+++.|...|.+.|++++|.++|+.+++. + ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3455566677777777777777765432 1111 2457888888888899998888888877642 1 11
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHH----hCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 372 PTVSTMNALITALCDGDQLPKTMEVLSDMK----SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (576)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (576)
-....++.|...|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 124567788888888888888888887743 3331 223 4678889999999999999999988775
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=3.2e-07 Score=86.36 Aligned_cols=219 Identities=11% Similarity=-0.019 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008147 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (576)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (576)
+..+.++.-+.++.... ...|+ ...|..+...|.+.|+.++|...|+...+.+ +.++..|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666432 22232 2346666777788888888888888887765 55678888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008147 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (576)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 368 (576)
...|++..+.... +..++..+..++...|++++|.+.++...+..+. +. ........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888776433 4566777777778888888888888888776422 22 1122222344567788888888665532
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008147 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (576)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (576)
. .|+...| . ......|+..++ +.+..+.+. . +.| ...+|..+...+.+.|++++|+..|+++.+.+
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2332222 2 222334555444 344444421 0 111 23568888888999999999999999988754
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=9.3e-08 Score=89.95 Aligned_cols=196 Identities=12% Similarity=0.040 Sum_probs=106.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008147 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (576)
Q Consensus 93 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (576)
..|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.+.|+...+.. +-+..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555566666677777776666666654 3456666666666777777777777776666553 22345566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHH
Q 008147 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (576)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (576)
...|++++|.+.|++..+. .|+..............++.++|...|.+.... ..|+...+ .+. ....|+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~---~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK---LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh---CCccccHH-HHH--HHHccCCCH
Confidence 6667777777777666654 233221111112233445666776666554321 12222221 222 223444433
Q ss_pred HHHHHHHHHh---cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008147 253 AREVYKMIHK---YNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (576)
Q Consensus 253 a~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (576)
+ +.+..+.+ ... +....+|..+...+.+.|++++|...|++..+.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 23333321 110 1123567777777777777777777777777654
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2.6e-07 Score=78.37 Aligned_cols=198 Identities=16% Similarity=0.073 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 209 (576)
...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-...|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344555666666666666666666653 2244566666666666666666666666666552 3344556666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (576)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (576)
.|++++|.+.|++.... +....-..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 66666666666666543 1121223355666666666666777777666666654 333455556666666667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (576)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (576)
..++.....+. ++..+.-..|..-...|+.+.+-+.=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666554 5666666666666666666666555554444
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=3.5e-06 Score=83.77 Aligned_cols=394 Identities=14% Similarity=0.048 Sum_probs=224.0
Q ss_pred cCChhHHHHHHHHHHHc---CCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHhHHHHHHHHHhcCChHHH
Q 008147 38 QGRISECIDLLEDMERK---GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGA 111 (576)
Q Consensus 38 ~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 111 (576)
..+.++++...-.+.+. +.+.|...++..+.-.....|+++.+.+.|++..+ .....|+.+...+...|.-..|
T Consensus 297 Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~A 376 (799)
T KOG4162|consen 297 RENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKA 376 (799)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHH
Confidence 44555554433332221 22346666666666666777889999999987542 3456788888888888888888
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC--C--CCCCHhhHHHHHHHHHhc----------
Q 008147 112 FQVLRLVQEAGLKA-DCKLYTTLITTCAK-SGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA---------- 175 (576)
Q Consensus 112 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~---------- 175 (576)
..+++.-......| |...+-..-..|.+ .+.++++.++-.+.... + -......|..+.-+|...
T Consensus 377 v~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 377 VNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 88887655432223 34444444444443 46677776666665541 1 112334444444444321
Q ss_pred -CCHHHHHHHHHHHHhCC-CCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008147 176 -GQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (576)
Q Consensus 176 -g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 253 (576)
....++++.+++..+.+ -.|+..-| +---|+..++++.|++...+..+-+. ..+...|..+.-.+...+++.+|
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHH
Confidence 22466777777776653 22322222 33345666777888877777766422 34555666666667777777777
Q ss_pred HHHHHHHHhcCCC-C------------------CHHHHHHHHHHHHh---------c--------------CCHHHHHHH
Q 008147 254 REVYKMIHKYNIK-G------------------TPEVYTIAINCCSQ---------T--------------GDWEFACSV 291 (576)
Q Consensus 254 ~~~~~~~~~~~~~-~------------------~~~~~~~li~~~~~---------~--------------g~~~~a~~~ 291 (576)
+.+.+.....--. . ...+...++..+-. . ++..+|.+.
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 7777655432100 0 01111111111110 0 011111111
Q ss_pred HHHH-----------------HhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008147 292 YDDM-----------------TKKGVI--PD------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (576)
Q Consensus 292 ~~~m-----------------~~~~~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (576)
.+.+ ...... |+ ...|......+...+..++|...+.+..... +.....|....
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G 691 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRG 691 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhh
Confidence 1110 000011 11 1123344455566677777776666666543 44455666666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008147 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDD 424 (576)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 424 (576)
..+...|.+.+|.+.|......+ +.++.+..++...+.+.|+..-|.. ++.++.+.+ +-+...|-.+...+.+.|+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 67777777888888777776643 3345677777778888887777766 777777743 3356777888888888888
Q ss_pred HHHHHHHHHHHHHc
Q 008147 425 VEVGLMLLSQAKED 438 (576)
Q Consensus 425 ~~~a~~~~~~~~~~ 438 (576)
.++|.+.|....+.
T Consensus 770 ~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 770 SKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhh
Confidence 88888887776653
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=3.6e-06 Score=82.33 Aligned_cols=304 Identities=15% Similarity=0.030 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHH---H
Q 008147 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---L 203 (576)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---l 203 (576)
.|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|...+++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444444445555555444444433211 1111 111112223445666666666666665542 223333331 1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008147 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (576)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (576)
.......+..+.+.+.+... .+..|+ ......+...+...|++++|.+.++...+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111234444444444331 112233 2333345556667777777777777776665 44556666677777777
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH-H--HHHHHHHccCCH
Q 008147 283 GDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNW 355 (576)
Q Consensus 283 g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~ 355 (576)
|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 777777777777665422 1222 2344566667777777777777777643322 1111111 1 222333333332
Q ss_pred HHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHHhcC
Q 008147 356 QKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-------P-NTITYSILLVACERKD 423 (576)
Q Consensus 356 ~~A~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------p-~~~~~~~ll~a~~~~g 423 (576)
..+.+. ......... ............++...|+.++|..++..+...... . ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 111111100 111122224566677888888898888887653211 0 1111222234567889
Q ss_pred CHHHHHHHHHHHHHc
Q 008147 424 DVEVGLMLLSQAKED 438 (576)
Q Consensus 424 ~~~~a~~~~~~~~~~ 438 (576)
+.++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988887653
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=6.3e-07 Score=76.16 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=111.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008147 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (576)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (576)
.|.-.|...|+...|..-+++..+.+ +.+..+|..+...|-+.|+.+.|.+.|++....... +....|..-..+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 34445666666666666666666654 445556666666666666666666666665554332 3444555555556666
Q ss_pred CHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 008147 319 KVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (576)
Q Consensus 319 ~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 397 (576)
++++|...|++...... .-...+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 66666666666555421 1123455555555566666666666666666543 223344555556666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 398 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
+.....+. ++..+....+..-...|+.+.+-+.=.++.+
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66555433 5666655556666666666665555555444
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=7.2e-06 Score=80.19 Aligned_cols=197 Identities=14% Similarity=0.025 Sum_probs=92.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHH
Q 008147 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTP--EVYTIAINCC 279 (576)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~ 279 (576)
+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...++....... .++. ..|..+...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344555566666666666555431 22233445555555566666666666655544321 1111 2233455556
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CcCHHHHHHHHHHHHc
Q 008147 280 SQTGDWEFACSVYDDMTKKGV-IPDEVFL-S--ALIDFAGHAGKVEAAFEI---LQEAKNQGI-SVGIISYSSLMGACSN 351 (576)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~ 351 (576)
...|++++|..++++...... .+..... + .++.-+...|....+... ......... ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666543221 1111111 1 122222223322222221 111111100 1111222245666777
Q ss_pred cCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 008147 352 AKNWQKALELYEHMKSIKLK---P-----TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (576)
Q Consensus 352 ~g~~~~A~~~~~~~~~~~~~---~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (576)
.|+.+.|..+++.+...... - .+...-...-.+...|+.++|.+++.....
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888877643211 0 111112222344578888888888887654
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.1e-05 Score=71.61 Aligned_cols=398 Identities=12% Similarity=0.015 Sum_probs=257.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChH
Q 008147 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 109 (576)
+....+-..++-+.|+..+.+.+...-.|.+.... .....+.++-.++.--++.....-+.....+. +..+.+ ..
T Consensus 102 ~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMl---a~l~~~g~r~~~~vl~ykevvrecp~aL~~i~-~ll~l~-v~ 176 (564)
T KOG1174|consen 102 RAAECYRQIGNTDMAIETLLQVPPTLRSPRINLML---ARLQHHGSRHKEAVLAYKEVIRECPMALQVIE-ALLELG-VN 176 (564)
T ss_pred HHHHHHHHHccchHHHHHHhcCCccccchhHHHHH---HHHHhccccccHHHHhhhHHHHhcchHHHHHH-HHHHHh-hc
Confidence 33444456788899999888777655434333322 22233222222333333322111111111111 111110 11
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (576)
.+...=..|....++|...+...-+.+++. .++...+...+-.+... -++-|+.....+...+...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 111111233333445554444445555544 34555555555544433 245677888899999999999999999999
Q ss_pred HHHhCCCCcCHhH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 008147 187 IMRSKNVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (576)
Q Consensus 187 ~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (576)
+.+.. .|+..+ .....-.+.+.|+.+....+...+.... +-....|-.-........++..|+.+-++..+.+
T Consensus 257 ~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 257 STLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred HHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 98865 343322 2222334567788888888888776531 1223334334445556788899999988888766
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008147 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (576)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (576)
+.+...+-.-...+...|++++|.-.|+..+...+ -+..+|..++..|...|++.+|..+-....+. ++.+..+.+.+
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~ 408 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF 408 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh
Confidence 45556676667788899999999999999877643 27789999999999999999999888876654 34556666555
Q ss_pred H-HHHHc-cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008147 346 M-GACSN-AKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (576)
Q Consensus 346 i-~~~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 422 (576)
. ..+.- ...-++|.++++..... .|+ ....+.+...+...|..++++.++++... ..||....+.+...+...
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHh
Confidence 2 33332 23347899999987764 455 45677788888999999999999999877 589999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHh
Q 008147 423 DDVEVGLMLLSQAKEDGVIPNLVM 446 (576)
Q Consensus 423 g~~~~a~~~~~~~~~~g~~~~~~~ 446 (576)
+.++++...|..+.. +.|...-
T Consensus 485 Ne~Q~am~~y~~ALr--~dP~~~~ 506 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALR--QDPKSKR 506 (564)
T ss_pred hhHHHHHHHHHHHHh--cCccchH
Confidence 999999999999887 4555443
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=1.4e-06 Score=78.12 Aligned_cols=321 Identities=12% Similarity=0.088 Sum_probs=171.9
Q ss_pred CCCcccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHhH
Q 008147 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTF 95 (576)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~ 95 (576)
....|.+....+..-+.|.-+|++.+|+.-|...++-+ |++......-...+...|+-.-|+.-|.++. .||-..-
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A 108 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA 108 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH
Confidence 34456667777777777778888888888888777766 5555544444555555566666666555543 3332211
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HH------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008147 96 -NMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CK------------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (576)
Q Consensus 96 -~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~------------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 160 (576)
---...+.+.|.+++|..=|+.+++...... .. .....+..+...|+...|+.....+++.. +.
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~W 187 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PW 187 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cc
Confidence 1122456677888888888877776542111 01 11222334445566777777777666653 34
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 008147 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (576)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 240 (576)
|...+..-..+|...|.+..|+.-++..-+.. .-+..++.-+-..+...|+.+.++...++..+ +.||...+-..
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~ 262 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPF 262 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHH
Confidence 66666666667777777777766655554432 22344444555556666777777666666654 34554322111
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhc
Q 008147 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---FLSALIDFAGHA 317 (576)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~ 317 (576)
-. .+.+..+.++. +......++|.++++-.+...+........ .+..+-.++...
T Consensus 263 YK------klkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 263 YK------KLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HH------HHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 00 00111111111 112234455555555555555443321122 222333344455
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008147 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (576)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 369 (576)
|++.+|++...++.+.. +.|..++.--..+|.-...++.|+.-|+...+.+
T Consensus 321 ~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred CCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 56666666666655532 2235555555666666666666666666665543
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.5e-05 Score=75.50 Aligned_cols=385 Identities=11% Similarity=0.078 Sum_probs=212.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHH
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 112 (576)
-+||+.++|++|+.+.+.=.... ..+...+ --+....+.+..++|+..++-..+.+..+...-...+.+.+++++|+
T Consensus 54 ValIq~~ky~~ALk~ikk~~~~~--~~~~~~f-EKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydeal 130 (652)
T KOG2376|consen 54 VALIQLDKYEDALKLIKKNGALL--VINSFFF-EKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEAL 130 (652)
T ss_pred hhhhhhhHHHHHHHHHHhcchhh--hcchhhH-HHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHH
Confidence 35678999999996665332111 1111100 11112345688999999999666666667777788899999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH---HHHHHhcCCHHHHHHHHHHH
Q 008147 113 QVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL---IDGCAKAGQVAKAFGAYGIM 188 (576)
Q Consensus 113 ~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m 188 (576)
.+|+.+.+.+.+- +...-..++.+-.. -.+ ++.+... ..| ..+|..+ ...+...|++.+|+++++..
T Consensus 131 diY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 131 DIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999998776321 11111111111110 011 1111111 122 2233332 23455678888888888777
Q ss_pred HhC-------C------CCcCHhHH-HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHhcCCh---
Q 008147 189 RSK-------N------VKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQV--- 250 (576)
Q Consensus 189 ~~~-------g------~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~--- 250 (576)
... + +.-...+. .-+.-.+-..|+.++|.+++...+.....-.|...+ -|.++. .....++
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva-~~~d~~~~d~ 280 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVA-LSKDQNYFDG 280 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhh-hccccccCch
Confidence 221 1 00011111 123344566788888888887776653211111111 111111 1110000
Q ss_pred --------------HHHHHHH--------------------------HHHHhc-CCCCCHHHHHHHHHHHH--hcCCHHH
Q 008147 251 --------------DRAREVY--------------------------KMIHKY-NIKGTPEVYTIAINCCS--QTGDWEF 287 (576)
Q Consensus 251 --------------~~a~~~~--------------------------~~~~~~-~~~~~~~~~~~li~~~~--~~g~~~~ 287 (576)
+..+.-| +..... +..|. ..+.+++.... +...+..
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~k 359 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKK 359 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhh
Confidence 0000000 000000 11222 23334443332 2235677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHHHHHHHHHHHccCCHHHHH
Q 008147 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (576)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (576)
+.+++...-+....-.....-..+......|+++.|.+++. .+.+.+..| .+...+...|.+.++-+.|.
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~ 437 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSAS 437 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHH
Confidence 78887777665443234556667777888999999999999 555555444 45566777788888877777
Q ss_pred HHHHHHHhC--CCCCCHH----HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 360 ELYEHMKSI--KLKPTVS----TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (576)
Q Consensus 360 ~~~~~~~~~--~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 433 (576)
.++.+.... .-.+... ++..+...-.+.|+-++|..+++++.+. .++|..+...++.+|++. +++.|..+-+
T Consensus 438 ~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 438 AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 777766531 0012222 3333444445789999999999999985 367888999999998875 5677777665
Q ss_pred HH
Q 008147 434 QA 435 (576)
Q Consensus 434 ~~ 435 (576)
.+
T Consensus 516 ~L 517 (652)
T KOG2376|consen 516 KL 517 (652)
T ss_pred cC
Confidence 54
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=2.4e-05 Score=86.90 Aligned_cols=337 Identities=9% Similarity=-0.044 Sum_probs=209.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HhhHHHHHHHHH
Q 008147 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI------EPN--VHTYGALIDGCA 173 (576)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~ 173 (576)
....|++..+...++.+.......+..........+...|+++++...+......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445567776666665542111111222333445556678999999998887754310 111 112223334566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCH----hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHh
Q 008147 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (576)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~ 246 (576)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 799999999999988763111121 23455566677899999999998887642111111 12345566677889
Q ss_pred cCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 008147 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIP--DEVFLSALIDFAG 315 (576)
Q Consensus 247 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p--~~~~~~~li~~~~ 315 (576)
.|+++.|...++..... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998776542 211 1 12334556667778899999999988875421 112 2334444556777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCcCHH--H--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 008147 316 HAGKVEAAFEILQEAKNQG--ISVGII--S--YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCD 386 (576)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 386 (576)
..|+.++|...+....... ...... . ....+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 111111 0 01122445568899999998877654221111 1113456677889
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 387 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987643 33332 245666678889999999999999999875
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.1e-05 Score=77.07 Aligned_cols=386 Identities=13% Similarity=0.052 Sum_probs=232.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChH
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (576)
|..+..|+++.|+.+|-+.+... |.+.++++.-...+.+.|++++|++--.+.. +.=...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 56678999999999999999887 6688888888888889999999887655432 333568999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCC---CCCCHhhHHHHHHHH----------H
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAG---IEPNVHTYGALIDGC----------A 173 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~---~~~~~~~~~~li~~~----------~ 173 (576)
+|+..|..-++.. +.+...++-+.+++.......+ --.++..+.... .......|..++..+ .
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999888764 5566677777776621100000 001111111100 000111222222221 1
Q ss_pred hcCCHHHHHHHHHHH-----HhCC-------CCc------------C----------HhHHHHHHHHHHccCCHHHHHHH
Q 008147 174 KAGQVAKAFGAYGIM-----RSKN-------VKP------------D----------RVVFNALITACGQSGAVDRAFDV 219 (576)
Q Consensus 174 ~~g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~~~~~ll~~~~~~g~~~~a~~~ 219 (576)
.-.++..|...+... ...| ..| | ..-...+.++.-+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 111122222221110 0001 111 0 11245577788888889999999
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------PEVYTIAINCCSQTGDWEFACSVYD 293 (576)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~ 293 (576)
+...... ..+..-++....+|...|.+.+....-....+.|...- ...+..+..+|.+.++++.|+..|.
T Consensus 247 y~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 247 YAKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 9887753 34444566667778888877776666555555442110 1122334456777888999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 008147 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (576)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 373 (576)
+.......|+..+ +....+++........-.+... ..-...-...+.+.|++..|.+.|.+++... +.|
T Consensus 323 kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~D 391 (539)
T KOG0548|consen 323 KALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PED 391 (539)
T ss_pred HHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cch
Confidence 8776655554322 2233344444333333222211 1111122455677788888888888877765 556
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
...|..-.-+|.+.|.+..|+.-.+...+. .|+ ...|..=..++....+++.|.+.|.+..+.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777887888888888888887776666653 443 344555566666777888888888777763
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.2e-07 Score=87.78 Aligned_cols=252 Identities=13% Similarity=0.155 Sum_probs=109.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHH
Q 008147 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (576)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 110 (576)
......-.|++..++.-.+ ..... .+.....-..+.+.+...|+++.++.-.....+|.......+...+...++-+.
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHH
Confidence 3344455677777765555 22211 012222334445555556666655554444444554444444333332233334
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 111 AFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (576)
Q Consensus 111 a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (576)
++.-++........+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 433333322222121 2222222223444456666665555432 234444555555666666666666666665
Q ss_pred hCCCCcCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 008147 190 SKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (576)
Q Consensus 190 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (576)
+.+ .|.. ...+..++.. ...+.+|..+|+++... ..++..+.+.+..++...|++++|.+++......+
T Consensus 159 ~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 159 QID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp CCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred hcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 432 2222 2222222221 22455555555555432 23444455555555555555555555555554433
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 008147 266 KGTPEVYTIAINCCSQTGDW-EFACSVYDDMTK 297 (576)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 297 (576)
+.++.+...++......|+. +.+.+.+.++..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 33444444445444444444 344444544444
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=4.9e-07 Score=83.77 Aligned_cols=80 Identities=20% Similarity=0.195 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 008147 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLS 433 (576)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~-~~a~~~~~ 433 (576)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +-+..|...++......|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444322 23344444444444444444444444444443321 11233333344444444444 33444444
Q ss_pred HHH
Q 008147 434 QAK 436 (576)
Q Consensus 434 ~~~ 436 (576)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 443
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=0.0001 Score=81.85 Aligned_cols=332 Identities=9% Similarity=0.002 Sum_probs=210.4
Q ss_pred hhhHHHHHHHHHhhhCCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHh
Q 008147 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAK 139 (576)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~--~~~~~~li~~~~~ 139 (576)
...|+++.+...++.++. .++.........+...|+++++...++...+.-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344667777777776641 2223333444556678999999999987754311 111 1122223345667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CcC--HhHHHHHHHHHHcc
Q 008147 140 SGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQS 210 (576)
Q Consensus 140 ~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~ 210 (576)
.|++++|...++.....-...+. ...+.+...+...|++++|...+++.....- .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999988763111121 3445666677889999999999988764310 111 23445566678889
Q ss_pred CCHHHHHHHHHHHhhCC--CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHh
Q 008147 211 GAVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQ 281 (576)
Q Consensus 211 g~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~ 281 (576)
|++++|...+++..... .+.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999988765421 1111 1 22334455666778899999999988765431 111 23345556677888
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcc
Q 008147 282 TGDWEFACSVYDDMTKKG--VIPDEV--FL--SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNA 352 (576)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 352 (576)
.|+++.|...+.+..... ...... .. ...+..+...|+.+.|...+........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999998875421 111110 10 1122444568899999998877554221111 11234677788899
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 008147 353 KNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (576)
Q Consensus 353 g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (576)
|+.++|...+++.... +..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999987642 22222 245666777888999999999999998875
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=4.2e-05 Score=78.42 Aligned_cols=149 Identities=10% Similarity=0.030 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHHHH
Q 008147 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVL 115 (576)
Q Consensus 39 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~ 115 (576)
.+...|+..|-+.++.+ +.-...+..++.+++...+...|.+.|.+.. ..+...+......|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34777888888888777 5556667778888888778889999998754 456677888888899888888888873
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 116 RLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (576)
Q Consensus 116 ~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (576)
-..-+.. ...-..-|..+--.|.+.++...+..-|+...+.. +.|...|..++.+|.++|++..|+++|.+...
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 2222111 00011122223334455566666666666665543 33556666666666666666666666665544
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=4.1e-05 Score=67.66 Aligned_cols=287 Identities=11% Similarity=0.039 Sum_probs=174.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHhHHH-HHHHHHhcCC
Q 008147 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSKD 107 (576)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~~~ 107 (576)
+.-+||+..++.+|++++..-.++. |.+..-...++..+....++..|...++++. .|...-|.. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 3457899999999999999888877 6666677777777777888999999999875 344444432 2345667788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008147 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (576)
Q Consensus 108 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (576)
+..|+++...|... |+...-..-+.+ ....+++..+..+.++.... -+..+.+...-...+.|+++.|.+-|
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 99999998887643 222221112222 23467888888888877642 24445555555667899999999999
Q ss_pred HHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-----------CHHH---------------HHH
Q 008147 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----------DHIT---------------IGA 239 (576)
Q Consensus 186 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~---------------~~~ 239 (576)
+...+-+--.....|+..+ +..+.|+.+.|++...++...+..-.| |+.. +|.
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 9888764344556776555 455778899999988887764321111 2111 111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008147 240 LMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (576)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (576)
-...+.+.++++.|.+.+..|.-+. ...|+.|...+.-. --.+++.+..+-+.-+.+.++- ...|+..++-.||++.
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhH
Confidence 1223345566666666665554322 12344444433221 1223344444444444444332 2345666666666666
Q ss_pred CHHHHHHHHH
Q 008147 319 KVEAAFEILQ 328 (576)
Q Consensus 319 ~~~~a~~~~~ 328 (576)
-++.|-.++.
T Consensus 325 yf~lAADvLA 334 (459)
T KOG4340|consen 325 YFDLAADVLA 334 (459)
T ss_pred HHhHHHHHHh
Confidence 6666655554
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=0.00014 Score=65.74 Aligned_cols=354 Identities=14% Similarity=0.137 Sum_probs=210.9
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHH
Q 008147 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKADCKLY-TTL 133 (576)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l 133 (576)
|....-|.-++.-+...|++.+|+..|......|+..|-++. ..|...|+...|+.=+...++. +||-..- ..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344555666676667778899999988887777776666655 4577888888888888888765 6664322 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCH
Q 008147 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (576)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 213 (576)
...+.+.|.+++|..-|+.+++.. |+..+- ..++.+.-..++-. .....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCch
Confidence 345678899999999999888763 322111 11111111111111 111223334445566
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (576)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (576)
..|+.....+.+. .+-|...+..-..+|...|.+..|+.-++...+.. ..+...+.-+-..+...|+.+.++...+
T Consensus 172 ~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6666665555542 12344445555556666666666665555554443 3334444445555556666666666666
Q ss_pred HHHhCCCCCCHH----HHH-------HH--HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH---HHHHHHHHHccCCHHH
Q 008147 294 DMTKKGVIPDEV----FLS-------AL--IDFAGHAGKVEAAFEILQEAKNQGISVGIIS---YSSLMGACSNAKNWQK 357 (576)
Q Consensus 294 ~m~~~~~~p~~~----~~~-------~l--i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 357 (576)
+.++.+ ||.. .|. .+ +......+++.++.+-.+...+..+...... +..+-.++...+.+.+
T Consensus 248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 655542 2221 111 01 1123466788888888888877654433333 3445567778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-------------------HHHHHHHH
Q 008147 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-------------------TYSILLVA 418 (576)
Q Consensus 358 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------------~~~~ll~a 418 (576)
|++.-.+..+.. +.|+.++.--..+|.-...+++|+.-|+...+. .++.. -|--++ +
T Consensus 326 AiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~--n~sn~~~reGle~Akrlkkqs~kRDYYKIL-G 401 (504)
T KOG0624|consen 326 AIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL--NESNTRAREGLERAKRLKKQSGKRDYYKIL-G 401 (504)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHhccchHHHHh-h
Confidence 999999888753 334788888888999889999999999888763 33322 122222 2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008147 419 CERKDDVEVGLMLLSQAKEDGVIPNLV 445 (576)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~~~~~ 445 (576)
--+...-.+..+.++++... ..||..
T Consensus 402 VkRnAsKqEI~KAYRKlAqk-WHPDNF 427 (504)
T KOG0624|consen 402 VKRNASKQEITKAYRKLAQK-WHPDNF 427 (504)
T ss_pred hcccccHHHHHHHHHHHHHh-cCCccc
Confidence 34455556677777777543 566654
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.0003 Score=67.62 Aligned_cols=424 Identities=11% Similarity=0.105 Sum_probs=248.6
Q ss_pred hhhHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHhHHHHHH
Q 008147 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (576)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (576)
.-++.+|..|+ ....+++++..++++...- |....+....+..-...++++...++|.+.. .-++..|...++
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34677899999 3558999999999999754 6666666666666667788999999998754 346777877776
Q ss_pred HHHh-cCChHH----HHHHHHHHH-HcCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 008147 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKAD-CKLYTTLITT---------CAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (576)
Q Consensus 101 ~~~~-~~~~~~----a~~~~~~m~-~~~~~~~-~~~~~~li~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 164 (576)
.--+ .++... -.+.|+... +.|+.+- -..|+.-+.. +....+++..++++.++....+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4333 233333 233344333 3443332 2334444433 3344466777888888875422111112
Q ss_pred HHH------HHHHH-------HhcCCHHHHHHHHHHHHh--CCCCcCHhH---------------HHHHHHHHHccCC--
Q 008147 165 YGA------LIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSGA-- 212 (576)
Q Consensus 165 ~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~ll~~~~~~g~-- 212 (576)
|+- =|+.. -+...+..|.++++++.. .|+.....+ |..+|..=-..+-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 221 11111 123456677887777753 243322222 4444432211111
Q ss_pred ------HHHHHHHHHHHhhCCCCCCCCHHHH-HH----HHHHHHhcCCh-------HHHHHHHHHHHhcCCCCCHHHHHH
Q 008147 213 ------VDRAFDVLAEMNAEVHPVDPDHITI-GA----LMKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYTI 274 (576)
Q Consensus 213 ------~~~a~~~~~~~~~~~~~~~~~~~~~-~~----ll~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 274 (576)
.....-.+++...- .+..|+.... .. .-+.+...|+. +++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112222322221 1334443221 11 11233444443 344445544433322223333433
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHH
Q 008147 275 AINCCSQT---GDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (576)
Q Consensus 275 li~~~~~~---g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (576)
+...--.. ...+.....+++++.. ...|+ .+|-..+..-.+..-+..|..+|.++.+.+..+ ++.++++++..|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 33221111 2355666667666553 23333 457777787788888999999999999887666 778888999877
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 008147 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEV 427 (576)
Q Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~ 427 (576)
| .++..-|.++|+--.+.- ..+..--...+.-+...++-..|..+|++....++.|+ ...|..+|.--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 568899999999765431 23444456777888888999999999999998877776 4689999999999999999
Q ss_pred HHHHHHHHHHc-C--CCCCHHhHHHHHHHHH
Q 008147 428 GLMLLSQAKED-G--VIPNLVMFKCIIGMCS 455 (576)
Q Consensus 428 a~~~~~~~~~~-g--~~~~~~~~~~li~~~~ 455 (576)
+.++-+++... . ..+....-..+++.|+
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYG 521 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHh
Confidence 99998887653 1 2333333444555543
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.6e-06 Score=83.41 Aligned_cols=218 Identities=13% Similarity=0.067 Sum_probs=121.9
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008147 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (576)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (576)
+.+.|++.+|.-.|+....+. +.+...|--|.......++-..|+..+++..+.+ +.+..+.-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 345566666666666665542 2334456666666666666666666666666655 445566666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH-----------HHHhcCCHHHHHHHHHHH-HHCCCCcCHHHHHHHHHHHHccCC
Q 008147 287 FACSVYDDMTKKGVIPDEVFLSALID-----------FAGHAGKVEAAFEILQEA-KNQGISVGIISYSSLMGACSNAKN 354 (576)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~-----------~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~ 354 (576)
.|++.++.-....++ |..+.. .......+....++|-++ ...+..+|+.+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 666666655433211 000000 000111122333333333 333334566666666666666677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLS 433 (576)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~ 433 (576)
+++|.+.|+..+... +-|...||.|...++...+.++|+..+.+.++ ++|+- .....|.-+|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777777666543 33556677777777777777777777777666 56652 344445556677777777666655
Q ss_pred HHH
Q 008147 434 QAK 436 (576)
Q Consensus 434 ~~~ 436 (576)
.++
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 443
No 97
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.70 E-value=0.00051 Score=68.97 Aligned_cols=206 Identities=14% Similarity=0.076 Sum_probs=146.6
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 008147 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (576)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (576)
..|...|..+.-+....|+++.+-+.|++....- ......|+.+-..|...|.-..|..+++........|+..+--.+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3578889999989999999999999999887543 345678888999999999999999999887655323433333222
Q ss_pred H-HHHH-hcCCHHHHHHHHHHHHhC--CC--CcCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHhhCCCCCC
Q 008147 169 I-DGCA-KAGQVAKAFGAYGIMRSK--NV--KPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNAEVHPVD 231 (576)
Q Consensus 169 i-~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 231 (576)
+ ..|. +.+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..+.+ +-.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 2 3333 456677777776666552 11 12234454444444432 12457788888887653 445
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
|+...|-++ -|+..++++.|.+..++..+.+-..++..|..|.-.+.-.+++.+|+.+.+...+.
T Consensus 478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 665555444 47788899999999999999876788999999999999999999999999876543
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=5.7e-05 Score=74.83 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=139.4
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (576)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (576)
...|+++.|+..|-+.. ..-..+.+......+.+|+.+++.+..+.. -.--|..+.+.|+..|+++.|.++|-
T Consensus 717 ~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHH
Confidence 34455666655553321 122334555667788999999998887642 23456778889999999999999986
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 008147 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (576)
Q Consensus 152 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (576)
+.- .++-.|.+|.+.|+++.|.++-.+.. |.......|-+-..-+-..|++.+|.+++-.+. .
T Consensus 790 e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~------~ 852 (1636)
T KOG3616|consen 790 EAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------E 852 (1636)
T ss_pred hcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------C
Confidence 643 35677899999999999999877665 324455566666666778899999988886543 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008147 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (576)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (576)
|+. .|.+|-+.|..+..+++..+-....+ ..+...+..-|-..|++..|...|-+..+ |.+.+
T Consensus 853 p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaav 915 (1636)
T KOG3616|consen 853 PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAV 915 (1636)
T ss_pred chH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHH
Confidence 542 46678888888888777765432221 24555566666667777777666554322 33444
Q ss_pred HHHHhcCCHHHHHHH
Q 008147 312 DFAGHAGKVEAAFEI 326 (576)
Q Consensus 312 ~~~~~~g~~~~a~~~ 326 (576)
..|...+.+++|.++
T Consensus 916 nmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 916 NMYKASELWEDAYRI 930 (1636)
T ss_pred HHhhhhhhHHHHHHH
Confidence 455555555554443
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=0.00013 Score=64.58 Aligned_cols=253 Identities=13% Similarity=0.110 Sum_probs=176.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC-CHHhHHHHH--HHHHhcCChHH
Q 008147 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLM--SVCASSKDSEG 110 (576)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li--~~~~~~~~~~~ 110 (576)
.+.+..++.+|-++++++.... |....+...-.+.+.+.+.+.+|+++...+.+. +...-..-+ ....+.+++..
T Consensus 53 CYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g 130 (459)
T KOG4340|consen 53 CYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPG 130 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcc
Confidence 3347889999999999998865 666666666666677778899999999888753 222221112 22445788889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (576)
Q Consensus 111 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (576)
+..+.++....| +..+.+.......+.|+++.|.+-|+...+.+--.....||..+.. .+.|+.+.|++...++.+
T Consensus 131 ~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 131 SRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIE 206 (459)
T ss_pred hHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHH
Confidence 998888776433 4455555566667899999999999998886544456677766554 468899999999999988
Q ss_pred CCCC-------------cCHh---------------HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 008147 191 KNVK-------------PDRV---------------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (576)
Q Consensus 191 ~g~~-------------p~~~---------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (576)
+|++ ||.. .+|.-...+.+.|+.+.|.+.+-.|.-.. ....|.+|...+.-
T Consensus 207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al 285 (459)
T KOG4340|consen 207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA-EEELDPVTLHNQAL 285 (459)
T ss_pred hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc-cccCCchhhhHHHH
Confidence 7643 2211 12222233567789999999888886432 23456677655532
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (576)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (576)
. -..+++.+..+-+.-+...+ +....|+..++-.||++.-++-|-+++.+-
T Consensus 286 ~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 286 M-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred h-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 2 23455666666666666665 455689999999999999999998887663
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=2.7e-05 Score=82.48 Aligned_cols=237 Identities=12% Similarity=0.038 Sum_probs=159.5
Q ss_pred CcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 008147 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (576)
Q Consensus 194 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (576)
+-+...|-..|......++.++|.++.++.... -++. --...|.++++.-..-|.-+...++|+++.+.. ..-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 444567777777788888888888888887653 1111 112356666666666677777788888877653 1235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHH
Q 008147 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (576)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 349 (576)
+|..|...|.+.+.+++|.++++.|.++-- -....|...+..+.+..+-+.|..++.++.+.-++ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 677788888888888888888888877522 35567777788888888878888888877664221 1233444455556
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 008147 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (576)
Q Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~ 427 (576)
.+.|+.+.++.+|+...... +.-...|+.+|..-.++|+.+.+..+|++....++.|-. ..|...|..-...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 67888888888888777543 345577888888888888888888888888877776642 456666655555566554
Q ss_pred HHHHHHHH
Q 008147 428 GLMLLSQA 435 (576)
Q Consensus 428 a~~~~~~~ 435 (576)
+..+=.++
T Consensus 1690 vE~VKarA 1697 (1710)
T KOG1070|consen 1690 VEYVKARA 1697 (1710)
T ss_pred HHHHHHHH
Confidence 44443333
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=7e-06 Score=79.16 Aligned_cols=254 Identities=13% Similarity=0.097 Sum_probs=146.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHH
Q 008147 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (576)
Q Consensus 137 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 216 (576)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.. +-|......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 445666667666666666554 3356666666666666666666777666666653 33455556666666666666666
Q ss_pred HHHHHHHhhCCCCC----C--CCHHHHHHHHHHHHhcCChHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 217 FDVLAEMNAEVHPV----D--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (576)
Q Consensus 217 ~~~~~~~~~~~~~~----~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (576)
.+.++..+...+.. . ++...-.. ........+....++|-.+ ...+..+|+.+...|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 66666554321000 0 00000000 1112222233444444333 34443467777777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Q 008147 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-- 367 (576)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 367 (576)
+.|+..+...+. |...|+.|...++...+..+|+..|.+.++..+.. +.+...|.-.|...|.+++|.+.|-..+.
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 777777775443 66777777777777777777777777777653221 23444556667777777777776665442
Q ss_pred -C------CCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 008147 368 -I------KLKPTVSTMNALITALCDGDQLPKTMEV 396 (576)
Q Consensus 368 -~------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 396 (576)
. ...++...|..|=.++.-.++.|-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1122345666666666666666644433
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.4e-08 Score=57.91 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008147 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (576)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (576)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 103
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=3.3e-05 Score=72.65 Aligned_cols=202 Identities=9% Similarity=0.031 Sum_probs=129.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH-HHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCCh--HH
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-AIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS--EG 110 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~--~~ 110 (576)
..++.++|+.+.+++++.+ |.+.+.......++...| .+++++..++++. +.+..+|+.....+.+.++. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 5678888888888888877 666666555555555555 5678888877653 44556677666555566653 56
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CC----HHHHHH
Q 008147 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQ----VAKAFG 183 (576)
Q Consensus 111 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~ 183 (576)
++.+++.+.+.. +-+..+|+...-++...|+++++++.++++++.+ +.+..+|+.....+.+. |. .++++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777777777765 5567778877777778888888888888888765 34666777666555443 22 235566
Q ss_pred HHHHHHhCCCCcCHhHHHHHHHHHHcc----CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 008147 184 AYGIMRSKNVKPDRVVFNALITACGQS----GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (576)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (576)
...++.... +-|...|+.+...+... +...+|.+.+.+.... -..+......|+..|+.
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcHHHHHHHHHHHHh
Confidence 665555542 44566777766666552 3344566666665432 12344555666666654
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=0.00022 Score=68.57 Aligned_cols=383 Identities=13% Similarity=0.083 Sum_probs=239.6
Q ss_pred HhhhHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 008147 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (576)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a 146 (576)
..+.|+++.|+.+|-.. .++|.+.|..-..+|+..|++++|++=-.+-++. .|+ ...|.....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 45668999999999753 4678899999999999999999998877666654 454 67888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH---HHHHHHHhC---CCCcCHhHHHHHHHHHHcc-------CCH
Q 008147 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF---GAYGIMRSK---NVKPDRVVFNALITACGQS-------GAV 213 (576)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~p~~~~~~~ll~~~~~~-------g~~ 213 (576)
+.-|.+-++.. +.+...++-+..++.......+.+ .++..+... ........|..++...-+. ...
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 99999988763 335566666766662110000000 011111000 0000112222232222111 011
Q ss_pred HHHHHHHHHHhh--------CC-----CCCCC------------C----------HHHHHHHHHHHHhcCChHHHHHHHH
Q 008147 214 DRAFDVLAEMNA--------EV-----HPVDP------------D----------HITIGALMKACANAGQVDRAREVYK 258 (576)
Q Consensus 214 ~~a~~~~~~~~~--------~~-----~~~~~------------~----------~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (576)
+..++..-.+.. .+ .+..| | ..-...+.++..+..+++.|.+-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111100 00 00011 1 1124568888889999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-------SALIDFAGHAGKVEAAFEILQEAK 331 (576)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~li~~~~~~g~~~~a~~~~~~~~ 331 (576)
...... .+..-++....+|...|.+.++...-....+.|.. ...-| ..+..+|.+.++++.++..|.+..
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 888765 45556677788899999998888777776666542 12222 223346667788999999999977
Q ss_pred HCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 008147 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (576)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (576)
.....|+. ..+....+++.+......-.+ |.. .-...=...+.+.|++..|+..+.+++... +-|..
T Consensus 326 te~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred hhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 76544432 234455566666665554332 332 112223667889999999999999999864 44678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh-H--HHHHHHHHhcHHHHHhhHHhhhcccC
Q 008147 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-F--KCIIGMCSRRYEKARTLNEHVLSFNS 473 (576)
Q Consensus 411 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~--~~li~~~~~~~~~a~~~~~~~~~~~~ 473 (576)
.|..-.-+|.+.|.+..|+.-.+..++. .|+... | ...+--..++|++|.+.....+..++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 8999999999999999999998888874 454322 1 11111112368888777665555554
No 105
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=6.3e-05 Score=70.81 Aligned_cols=209 Identities=11% Similarity=0.011 Sum_probs=129.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 008147 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (576)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 178 (576)
..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| +++++++.++.+.+.. +.+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 34445667778888888777664 334456666656666666 5678888888877664 33555666555555555552
Q ss_pred --HHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc---CCh---
Q 008147 179 --AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV--- 250 (576)
Q Consensus 179 --~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~--- 250 (576)
++++..++++.+.. +-|..+|+....++...|+++++++.++++++.+ ..+...|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccccccc
Confidence 56777777777654 4466777777777777778888888888877642 33445555555444443 222
Q ss_pred -HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008147 251 -DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (576)
Q Consensus 251 -~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (576)
++.......+.... +.+..+|+-+...+... +...+|.+.+.+..+.++. +...+..+++.|+.
T Consensus 199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555555554 45566777776666652 3345577777776654432 55666777776664
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00091 Score=69.09 Aligned_cols=323 Identities=14% Similarity=0.192 Sum_probs=172.0
Q ss_pred cchhhhHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 008147 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (576)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (576)
.|+++...+..+++..+-+.+-+++++++.-.+ .++.+..+..+++-...+. +.....++.+++..-|. -.+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~i 1057 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAEI 1057 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHHH
Confidence 345556666677788888888888888775433 3444444444433222221 12222333333321111 112333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008147 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (576)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 181 (576)
+..++-+++|..+|...- .+....+.||. ..++++.|.+.-++.. .+.+|..+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 445556677777776542 23444444443 3455566665555443 345577777777777777777
Q ss_pred HHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008147 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (576)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (576)
.+-|-+.. |+..|..++....+.|.+++..+.+...+++. -.|. .=+.|+-+|++.+++.+.+++..
T Consensus 1124 ieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~--~E~~--id~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1124 IESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV--REPY--IDSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh--cCcc--chHHHHHHHHHhchHHHHHHHhc---
Confidence 66554332 55667777777777777777777665554431 2333 23456667777777666555432
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008147 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (576)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (576)
.|+..-...+.+-|...|.++.|.-+|... ..|..+...+...|++..|...-++. .+..+
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~kt 1251 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKT 1251 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhH
Confidence 344444555566666666666665555432 23555555566666666555443322 23455
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008147 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (576)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (576)
|-.+-.+|...+.+.-| +|...++-....-...++.-|-..|-+++.+.+++..
T Consensus 1252 WK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 55555555554443322 2222222233344455666666666666666655543
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=5.4e-08 Score=57.07 Aligned_cols=31 Identities=52% Similarity=0.822 Sum_probs=13.5
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (576)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (576)
+.||..+||+||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00064 Score=65.45 Aligned_cols=396 Identities=12% Similarity=0.110 Sum_probs=230.7
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 008147 49 EDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125 (576)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 125 (576)
++-++.+ |.+...+..+++-+..+ .+++++..++++. +-....|..-|..-...++++....+|.+.+..- .
T Consensus 10 ~~rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--L 84 (656)
T KOG1914|consen 10 RERIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--L 84 (656)
T ss_pred HHHHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--h
Confidence 3444555 67777777777777666 7999999999875 3456789999999999999999999999888653 4
Q ss_pred CHHHHHHHHHHHHh-cCCHHH----HHHHHHHH-HHCCCCC-CHhhHHHHHHH---------HHhcCCHHHHHHHHHHHH
Q 008147 126 DCKLYTTLITTCAK-SGKVDA----MFEVFHEM-VNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMR 189 (576)
Q Consensus 126 ~~~~~~~li~~~~~-~g~~~~----a~~~~~~~-~~~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~ 189 (576)
+...|..-|+.-.+ .++... ..+.|+-. .+.|+++ +...|+..+.. |....+++...++|+++.
T Consensus 85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 46666666654333 233333 22334433 3345443 23345555543 344556778888888887
Q ss_pred hCCCCcCHhHHH------HHHHH-------HHccCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHH
Q 008147 190 SKNVKPDRVVFN------ALITA-------CGQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALM 241 (576)
Q Consensus 190 ~~g~~p~~~~~~------~ll~~-------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~~ll 241 (576)
..-+.-=...|+ .=|.. --+...+..|.++++++..-..|+.....+ |-.+|
T Consensus 165 ~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 165 VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Confidence 542211111222 11111 112344666777776654322232211111 33333
Q ss_pred HHHHhcCCh---------HHHHHHHHHH-HhcCCCCCHHHHHHHHH-------HHHhcCC-------HHHHHHHHHHHHh
Q 008147 242 KACANAGQV---------DRAREVYKMI-HKYNIKGTPEVYTIAIN-------CCSQTGD-------WEFACSVYDDMTK 297 (576)
Q Consensus 242 ~~~~~~g~~---------~~a~~~~~~~-~~~~~~~~~~~~~~li~-------~~~~~g~-------~~~a~~~~~~m~~ 297 (576)
..= +.+-+ .+..-.+++. .-.+.. +.+|.---. .+...|+ -+++..++++...
T Consensus 245 ~wE-ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 245 KWE-KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHH-hcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 221 11111 1111122222 122222 233322222 2222333 3556666666544
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-C
Q 008147 298 KGVIPDEVFLSALIDFAGHAG---KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-T 373 (576)
Q Consensus 298 ~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 373 (576)
.-..-+..+|..+...--..- ..+....++.++...-..--.-+|..++..-.+..-+..|+.+|.+..+.+..+ +
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 322224444444443221111 255566666666554322224578888888888999999999999999887777 7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHH
Q 008147 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCII 451 (576)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li 451 (576)
+...++++.-||. ++.+-|.++|+--.+. ..-+..--...+.-+.+.++-..++.+|++..+.++.||. .+|..+|
T Consensus 402 VfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 402 VFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred hhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 7888889888775 6678899999875443 2334444567778888899999999999999988666554 5788888
Q ss_pred HHH
Q 008147 452 GMC 454 (576)
Q Consensus 452 ~~~ 454 (576)
+-=
T Consensus 480 ~yE 482 (656)
T KOG1914|consen 480 EYE 482 (656)
T ss_pred HHH
Confidence 653
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=5.8e-05 Score=80.09 Aligned_cols=225 Identities=11% Similarity=0.143 Sum_probs=166.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 008147 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (576)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 165 (576)
....|-..+....+.++.+.|.+++++++.. +.+ -...|.++++.-..-|.-+...++|++..+.. -.-.+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4457888888888889999999998887753 221 23467777777777788888889999888752 234568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHH
Q 008147 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMK 242 (576)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~ 242 (576)
..|...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+..+-+.|..++.+.... -|. .......+.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~----lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS----LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh----cchhhhHHHHHHHHH
Confidence 88888999999999999999999875 2346678888888888888888899998888764 233 334445556
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCH
Q 008147 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKV 320 (576)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~ 320 (576)
.-.+.|+.+++..+|+...... +--...|+..|+.-.+.|+.+.+..+|++....++.|-. ..|...+..=-..|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 6678899999999998887765 445678999999999999999999999999888776543 3455555544444554
Q ss_pred HHHH
Q 008147 321 EAAF 324 (576)
Q Consensus 321 ~~a~ 324 (576)
..++
T Consensus 1688 ~~vE 1691 (1710)
T KOG1070|consen 1688 KNVE 1691 (1710)
T ss_pred hhHH
Confidence 4333
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=0.00097 Score=67.40 Aligned_cols=265 Identities=17% Similarity=0.191 Sum_probs=128.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC-CHHhHHHHHHHHHhcCChHHHHHH
Q 008147 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQV 114 (576)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 114 (576)
+..|.+++|..+|.+..+-+ ++-.++.+.|.+++|.++-+.-..- =..||..-..-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 47788888888887766644 3334455556666665554432110 012233333333334444444444
Q ss_pred HHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------C--------
Q 008147 115 LRLV----------QEAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----------G-------- 157 (576)
Q Consensus 115 ~~~m----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~-------- 157 (576)
|++. +... -..|...|.-....+-..|+.+.|+.+|...... |
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 4321 1111 0123333444444444556666665555544321 0
Q ss_pred --CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHcc---------------CCHHHHHHHH
Q 008147 158 --IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS---------------GAVDRAFDVL 220 (576)
Q Consensus 158 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------------g~~~~a~~~~ 220 (576)
-.-|....-.|.+.|-..|++.+|...|.+... |...|+.|-.. .+.-.|-..|
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence 012444455566677777777777776665532 22222222111 1222333333
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------HH--hcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM--------IH--KYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (576)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~--~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 290 (576)
++.. . -+...+..|-+.|.+.+|+++--. +. +.+...|+...+.-...++...++++|..
T Consensus 1032 Ee~g-----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1032 EELG-----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred HHcc-----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 3321 0 011223456677777777665321 11 22233466666766777777777777766
Q ss_pred HHHHHHh----------CC----------------CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008147 291 VYDDMTK----------KG----------------VIPDE----VFLSALIDFAGHAGKVEAAFEILQE 329 (576)
Q Consensus 291 ~~~~m~~----------~~----------------~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 329 (576)
++-...+ +| -.|+. ..+..+...|.+.|.+..|-+-|.+
T Consensus 1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 6532211 11 12233 3455666677888887777665554
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00067 Score=70.02 Aligned_cols=300 Identities=13% Similarity=0.120 Sum_probs=150.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 008147 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (576)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (576)
|+..-...+.++...+-+.+-+++++++.-.+ +.-+...-|.|+-...+ -+...+.+..+++..-. .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------H
Confidence 44444455666666666777777776665221 11122223333333222 23344444544444321 111 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---------------------CCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 008147 169 IDGCAKAGQVAKAFGAYGIMRSKN---------------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (576)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g---------------------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (576)
......++-+++|+.+|++....+ ---....|..+..+-.+.|.+.+|.+-|-+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 222333444455555544432100 0002345555555555556666655554331
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008147 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307 (576)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 307 (576)
.|...|..+++...+.|.+++-.+.+....+....|. +=+.||-+|++.++..+-.+.. .-||....
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI-------AGPNVANI 1197 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh-------cCCCchhH
Confidence 2333555566666666666666666655555443332 2345555666666555443322 12455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 008147 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (576)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 387 (576)
..+.+-|...|.++.|.-++.. +..|..|...+...|+++.|.+.-++. .+..+|-.+-.+|...
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDK 1262 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhch
Confidence 5555555556666555555532 334555666666666666665544432 3556777777777665
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (576)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 435 (576)
+.+.-| +|....+-....-..-++..|...|-+++.+.+++..
T Consensus 1263 ~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1263 EEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 554422 2332223334455666777777777777777766543
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=6.3e-06 Score=81.56 Aligned_cols=215 Identities=13% Similarity=0.063 Sum_probs=137.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 209 (576)
-..+...+.+.|-...|..+|+++. .|.-++-+|...|+..+|..+..+..++ +||...|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3445566667777777777776654 2555666777777777777777666663 6677777777776666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (576)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (576)
..-+++|.++.+..... .-..+.....+.++++++.+.|+...+.+ +....+|-.+..+..+.++++.|.
T Consensus 470 ~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 66677777776654321 11111112223567777777776666554 445566777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008147 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 367 (576)
+.|.......+. +...|+.+-.+|.+.++..+|...+++..+.+ .-+...|-..+....+.|.++.|.+.+.++.+
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 777776664322 44567777777777777777777777777665 33455565566666677777777777776653
No 113
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=0.00034 Score=69.55 Aligned_cols=105 Identities=23% Similarity=0.359 Sum_probs=41.9
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (576)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (576)
.....|.+|+.+++.+...... ..-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|++..|.
T Consensus 743 i~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 3344444444444444433211 1123334444444445544444443311 1223344444445444444
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 008147 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (576)
++-.+. .|.......|.+-..-.-+.|++.+|.++|
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 443322 122223333333333344444444444444
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=0.0014 Score=66.36 Aligned_cols=273 Identities=14% Similarity=0.176 Sum_probs=154.3
Q ss_pred HHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 68 FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (576)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 147 (576)
..+....|.+++|..+|.+... |..|=..|-..|.+++|+++-+.--+..+ ..||..-..-+...+|.+.|+
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 3345677999999999987653 44555667788999999998765433222 245655666666677788777
Q ss_pred HHHHHH----------HHCC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHH
Q 008147 148 EVFHEM----------VNAG---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (576)
Q Consensus 148 ~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 208 (576)
+.|++. .... -..|...|.-...-.-..|+.+.|+.+|...+. |-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 776542 1111 123455555555666678999999999987653 334444455
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CCC------------
Q 008147 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----------NIK------------ 266 (576)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~~~------------ 266 (576)
-.|+.++|-++-++ .-|......+.+.|-..|++.+|...|.+.... +..
T Consensus 950 ~qGk~~kAa~iA~e--------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEE--------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred eccCchHHHHHHHh--------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 55555555554433 123334444555555555555555554433211 000
Q ss_pred CCH-----------HHHHHHHHHHHhcCCHHHHHHHHHH--------HHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 267 GTP-----------EVYTIAINCCSQTGDWEFACSVYDD--------MTK--KGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (576)
Q Consensus 267 ~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~--------m~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (576)
.|. .-....+..|-+.|.+.+|+++--+ +.. .....|+...+...+.++...++++|..
T Consensus 1022 ~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 000 0112223445666777666654311 111 2233466666666677777777777776
Q ss_pred HHHHHHH----------CCC----------------CcC----HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008147 326 ILQEAKN----------QGI----------------SVG----IISYSSLMGACSNAKNWQKALELYEHM 365 (576)
Q Consensus 326 ~~~~~~~----------~~~----------------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 365 (576)
++...++ +++ .|+ ......+...|.++|.+..|-+-|.+.
T Consensus 1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 6654432 111 122 224556667778888877777666554
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=8.2e-06 Score=80.79 Aligned_cols=213 Identities=12% Similarity=0.036 Sum_probs=109.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 008147 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (576)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (576)
..+...+...|-...|..+|+++ ..|..++-+|...|+..+|..+..+..++ +||...|..+.+...
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhcc
Confidence 34445555566666666666544 23444555556666666666555554442 455555555555544
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (576)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (576)
...-+++|.++.+....+ +-..+.......++++++.+.|+.-.+.+.- -..+|-.+-.+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 444455555555443322 1111112222345666666666554443221 23445445445555566666666
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008147 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (576)
.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++.
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 665555432 2234456666666666666666666666665554 3344445555555555666666666655543
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=2.9e-05 Score=67.75 Aligned_cols=152 Identities=12% Similarity=0.039 Sum_probs=75.1
Q ss_pred HHHHHhhhHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008147 67 FFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (576)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 143 (576)
+...+...|+-+++..+.... .+.|....+..+....+.|++..|...|++..... ++|..+|+.+.-+|.+.|++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 333333344444444444332 12334444445555555555555555555555443 45555555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHH
Q 008147 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (576)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 221 (576)
++|..-|.+..+.. .-+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+-.
T Consensus 151 ~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 151 DEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55555555555442 1233444555555555555555555555555442 2234444445555555555555555543
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=2.6e-05 Score=71.10 Aligned_cols=187 Identities=10% Similarity=-0.012 Sum_probs=127.9
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--h
Q 008147 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--H 163 (576)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 163 (576)
+.....+..+...+...|+++.|...|+.+.... +.+. .++..+..++...|++++|...++.+.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677788888899999999999999988764 2222 46677888899999999999999999876321111 1
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCcCH-hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 008147 164 TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (576)
Q Consensus 164 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 234 (576)
++..+...+... |+.++|.+.|+++... .|+. ..+..+... .. . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH----------
Confidence 345555555544 6788889888888766 3443 222222111 00 0 00000
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 235 ITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678899999999999998877631 234578889999999999999999998888765
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=4.7e-05 Score=69.46 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (576)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (576)
...+..+...+...|++++|...|+++.+.. |+ ..++..+...+.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4444555555555555666655555555432 21 123444555555555555555555555543
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=8.1e-05 Score=65.14 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=60.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 008147 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGK--VEAA 323 (576)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a 323 (576)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 334444544555544444 445555555555555555555555555555554332 444444444432 34444 3555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008147 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 368 (576)
.+++++..+.+ +.+..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555543 223445555555555555555555555555543
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=6.8e-05 Score=65.61 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHHHH
Q 008147 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTME 395 (576)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~ 395 (576)
+.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444332 3344444444455555555555555555444433 22344444444432 33343 245555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 396 VLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 396 ~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
++++..+. .| +...+..+...+...|++++|+..++++.+
T Consensus 132 ~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55554442 22 334444444445555555555555555544
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00035 Score=61.18 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 008147 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (576)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (576)
+.+..+++-|.+.+++|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|..+ .+|+..+.+....++...
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHh
Confidence 344444555555555554321 23333333333322 23344555555555432 344444444444444555
Q ss_pred CChHHHHHHHHHHHhcC
Q 008147 248 GQVDRAREVYKMIHKYN 264 (576)
Q Consensus 248 g~~~~a~~~~~~~~~~~ 264 (576)
|++++|..+++......
T Consensus 221 ~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKD 237 (299)
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 55555555555544443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=0.00013 Score=63.75 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008147 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (576)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (576)
.....+....+.|++..|...|++..... ++|...|+.+.-+|.+.|+++.|..-|.+..+.... +...++.+.-.+.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHH
Confidence 33334444455555555555555554443 445555555555555555555555555554443222 3333444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008147 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (576)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (576)
-.|+++.|..++......+ .-|..+-..+.......|++++|.++-.
T Consensus 180 L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 4555555555555444443 2234444444444555555555544433
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.37 E-value=0.0047 Score=63.44 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=137.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCChHHH
Q 008147 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (576)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a 111 (576)
.+..+++..|++...++.+.. |+......+-+-...+.|..++|..+++.. ...|..|...+-..|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 356788888998888888876 444333333333456678888888877754 234777888888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HHHH
Q 008147 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAKA 181 (576)
Q Consensus 112 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A 181 (576)
..++++.... -|+......+..+|.+.+++.+-.+.--++-+. .+.+...+-++++.+...-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999888765 456777777888888888776544443333332 23345555556665544211 2346
Q ss_pred HHHHHHHHhCC-CCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008147 182 FGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (576)
Q Consensus 182 ~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (576)
.+.++.+.+.+ -.-+..-...-...+...|++++|..++..-.... -...+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66666666553 11122222222334556677888888884332221 11223334445566677777777777777766
Q ss_pred HhcC
Q 008147 261 HKYN 264 (576)
Q Consensus 261 ~~~~ 264 (576)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6665
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.36 E-value=0.00056 Score=70.55 Aligned_cols=359 Identities=13% Similarity=0.038 Sum_probs=211.4
Q ss_pred HHHHHHHHHhhhCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 75 KAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (576)
Q Consensus 75 ~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (576)
++...|+..|-+....| ...|..|...|....+...|...|+...+.+ ..+......+.+.|++..+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34566666665443222 3578899999998888999999999988775 5577888899999999999999998833
Q ss_pred HHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 008147 152 EMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230 (576)
Q Consensus 152 ~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 230 (576)
..-+.. ...-...|....-.|.+.++...|..-|+...+.. +.|...|..+..+|..+|++..|.++|.+... +
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~----L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL----L 625 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh----c
Confidence 332221 01112233344456778899999999999888764 55778999999999999999999999988765 3
Q ss_pred CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHH-------HHHHHHHHH
Q 008147 231 DPDHI-TIGALMKACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEF-------ACSVYDDMT 296 (576)
Q Consensus 231 ~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~-------a~~~~~~m~ 296 (576)
.|+.. .--...-.-+..|.+.+|...+..+.... ...-..++-.+...+.-.|-..+ +++.|.-..
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 55432 11122234567788888888887664421 11112222222222222232222 222222222
Q ss_pred hCCCCCCHHHHHHHHHH-----------------------HHhcCCH---H---HHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008147 297 KKGVIPDEVFLSALIDF-----------------------AGHAGKV---E---AAFEILQEAKNQGISVGIISYSSLMG 347 (576)
Q Consensus 297 ~~~~~p~~~~~~~li~~-----------------------~~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (576)
......+...|-.+-++ ....+.. + -+.+.+-.-.+ ...+..+|..|+.
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGI 783 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhH
Confidence 22111122222111111 1111111 1 01111111001 1112333333443
Q ss_pred HHHc--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008147 348 ACSN--------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (576)
Q Consensus 348 ~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 419 (576)
.|.+ ..+...|...+.+.++.. ..+..+||.|.-. ...|.+.-|..-|-+-... -+-+..+|..+.-.|
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeE
Confidence 3332 122346777777766543 4567788877665 5557777777666554442 234677888888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 008147 420 ERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (576)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~g~~~~~~~ 446 (576)
....+++.|...|.+... +.|+..+
T Consensus 861 l~n~d~E~A~~af~~~qS--LdP~nl~ 885 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQS--LDPLNLV 885 (1238)
T ss_pred EecccHHHhhHHHHhhhh--cCchhhH
Confidence 999999999999998876 5565443
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00014 Score=75.70 Aligned_cols=236 Identities=10% Similarity=0.094 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHH
Q 008147 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (576)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 204 (576)
++.....+=.+.+..|..++| .+++.+..+ ++....+-....+++.-...... ..+.+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 344444444556667777666 455555543 22222222222223222222222 2345678888899
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008147 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (576)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (576)
....+.|..++|..+++...+. .|| ......+...+.+.+++++|....+...... +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999864 565 4456778888999999999999999999886 677888889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008147 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (576)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (576)
++++|..+|+++...+.. +..++..+..++...|+.++|...|+...+.. .+....|+.++. ++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHH
Confidence 999999999999985433 57888889999999999999999999988763 344556655443 3344445566
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHcC
Q 008147 364 HMKSI----KLKPTVSTMNALITALCDG 387 (576)
Q Consensus 364 ~~~~~----~~~~~~~~~~~li~~~~~~ 387 (576)
++.-. |......+...+|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 55422 2223344555566555543
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00045 Score=72.01 Aligned_cols=146 Identities=10% Similarity=0.019 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008147 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (576)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (576)
..+...+..|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3345556666666666666666666666666553 344555556666666666666666666666665433 44455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008147 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (576)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 380 (576)
..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|++..+.. .|....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 556666666666666666666533 2335566666666666666666666666665432 2333444443
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00044 Score=72.92 Aligned_cols=147 Identities=12% Similarity=0.050 Sum_probs=97.1
Q ss_pred hhhHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 008147 26 SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (576)
Q Consensus 26 ~~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (576)
..+...|..|+ +.+++++|+++.+...+.. |.....+...+.++.+.++.+++..+ .++..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~ 92 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDS 92 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhh
Confidence 33444444444 8899999999999888766 66666666666666666665554433 33344
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008147 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (576)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 181 (576)
.....++.....+...|... .-+...+..+..+|.+.|+.+++..+++++.+.. +-|..+.|.+.-.|+.. ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 44444454444444444443 3344567777788888888888888888888776 44677778888778777 88888
Q ss_pred HHHHHHHHhC
Q 008147 182 FGAYGIMRSK 191 (576)
Q Consensus 182 ~~~~~~m~~~ 191 (576)
..++.+....
T Consensus 169 ~~m~~KAV~~ 178 (906)
T PRK14720 169 ITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHH
Confidence 8777776643
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=3.8e-05 Score=63.46 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 008147 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (576)
Q Consensus 95 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (576)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555556666666666666665553 3455556666666666666666666666666543 3355555666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 008147 175 AGQVAKAFGAYGIMRSK 191 (576)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (576)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=4.4e-05 Score=63.08 Aligned_cols=90 Identities=8% Similarity=-0.049 Sum_probs=38.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008147 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (576)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 425 (576)
...+...|++++|...|+...... +.+...|..+...+.+.|++++|+..|++..... +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444444444444332 2234444444444444444444444444444321 11333444444444444444
Q ss_pred HHHHHHHHHHHH
Q 008147 426 EVGLMLLSQAKE 437 (576)
Q Consensus 426 ~~a~~~~~~~~~ 437 (576)
++|+..+...++
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.0011 Score=63.23 Aligned_cols=217 Identities=13% Similarity=0.053 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008147 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (576)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (576)
+.++...-+.+......-.|+...+...+........-..+..++.+..+. .......-..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 444444444444332222344444444444433333333333333332221 11223333334456778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008147 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (576)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (576)
+.+...-. -|.+.+....+.+...++.++|.+.++.+....+ ......-.+..+|.+.|++.+|..+++...... +-
T Consensus 330 ~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P-~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~ 406 (484)
T COG4783 330 QPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDP-NSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PE 406 (484)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CC
Confidence 88777633 2666667777788888888888888888887642 225666677888888888888888888877554 56
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHH
Q 008147 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKCI 450 (576)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~l 450 (576)
|+..|..|..+|...|+..++..-..+ ++...|+++.|...+....+. ...|+..-+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dar 468 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADAR 468 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 778888888888888887777655443 456678888888888877765 123444444445
Q ss_pred HHH
Q 008147 451 IGM 453 (576)
Q Consensus 451 i~~ 453 (576)
|+.
T Consensus 469 i~~ 471 (484)
T COG4783 469 IDQ 471 (484)
T ss_pred HHH
Confidence 544
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00092 Score=63.85 Aligned_cols=114 Identities=14% Similarity=0.039 Sum_probs=62.0
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008147 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (576)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (576)
+...|+.++|++.++.+... .+.|..........+.+.++..+|.+.++++.... +......-.+..+|.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 34455666666666665543 12333344444555566666666666666665543 222445555556666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (576)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (576)
+|+.++++....... |+..|..|..+|...|+..++..
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 666666665554332 55566666666666665555443
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.0011 Score=70.02 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=29.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008147 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (576)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (576)
.+..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+...|+.. ++++|.+++.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44445555555555555555555554431 23344455555555555 5555555544443
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0025 Score=56.02 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=49.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 008147 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (576)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 389 (576)
+.+..+.+.|.+.++.|.+-. +..+.+-|..++.+ .+.+..|.-+|++|.+. .+|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444555555555554432 23333333333322 23355555555555432 24555555555555555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008147 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (576)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 425 (576)
+++|..++++..... .-+..|...++..-...|..
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 555555555555432 22344444444333334433
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=8.6e-05 Score=60.95 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008147 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (576)
.+..+...+.+.|++++|...+++..+.+ +.+...+..+...|...|++++|+..|+...
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333444444444443333322 2223333333333334444444444443333
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0037 Score=54.55 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=64.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008147 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (576)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (576)
.+.-+....|+.+.|...++.+...- +.+..+-..-.-.+-..|++++|.++++.+.+.+.. |..++-.-+...-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcC
Confidence 33444445555666666665555443 323222222222233456666666666666665532 4445544444444455
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008147 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 367 (576)
+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 555555555544443 344555555555555555555555555555553
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.7e-06 Score=49.70 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 008147 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (576)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (576)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777776666665
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.017 Score=59.47 Aligned_cols=223 Identities=12% Similarity=0.057 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHhhhCC--CCCHHhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 73 SQKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (576)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (576)
..+++..|.+...++. .||. .|..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|.+.+..++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 4567888888777654 2332 34445544 55789999999988888766533 88999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCC----------HHHHHH
Q 008147 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFD 218 (576)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~ 218 (576)
+|++..+. .|+......+..+|.+.+.+.+-.++=-+|-+. .+-+...|-++++.....-. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999877 577888888888999988876544444344332 34455566666666555421 234566
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (576)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (576)
.++.+.+.+ |-..+..-...-.......|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 677776653 311222222233445567888999999983 343433344555666778888999999999999999998
Q ss_pred CCCC
Q 008147 298 KGVI 301 (576)
Q Consensus 298 ~~~~ 301 (576)
.|..
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 8753
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=0.00019 Score=58.80 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 209 (576)
...+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|..++++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3334444444445555555544444432 2234444444444444455555555544444332 2233344444444444
Q ss_pred cCCHHHHHHHHHHHh
Q 008147 210 SGAVDRAFDVLAEMN 224 (576)
Q Consensus 210 ~g~~~~a~~~~~~~~ 224 (576)
.|++++|.+.++...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555554444
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0057 Score=53.42 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=57.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (576)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (576)
..|++++|.++++.+.+.+ +.|..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 3455555555555555544 444444444444444445555555555555544 22355555555555555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHccC---CHHHHHHHHHHHHh
Q 008147 326 ILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKS 367 (576)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~ 367 (576)
.++++.-.. |.++..+..+.+.+--.| +.+.|.+.|.+..+
T Consensus 176 ClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 176 CLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 555555432 223333333333332222 23445555555544
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=9.3e-06 Score=48.37 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC
Q 008147 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (576)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (576)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=9.8e-06 Score=47.89 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 008147 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (576)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (576)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.5e-05 Score=47.04 Aligned_cols=32 Identities=44% Similarity=0.756 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 008147 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (576)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (576)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00066 Score=65.37 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccC
Q 008147 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (576)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (576)
.|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +.+...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555555543 222 2234444444455555555555555432 223444444444455555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008147 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (576)
Q Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (576)
+.+.|..+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555555432 222335555555555555555555555443
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.00067 Score=65.31 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=99.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008147 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (576)
Q Consensus 93 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (576)
..-.+++..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +.+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556677777889999999999998774 543 3457788888888889999998888653 44666777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcC-HhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 008147 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMN 224 (576)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (576)
.+.++++.|+.+.+++... .|+ ..+|..|..+|...|+++.|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999876 454 4589999999999999999999888765
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.0014 Score=54.43 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=35.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 008147 277 NCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (576)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (576)
..+...|++++|...|+........|+. .....+...+...|++++|+..++..... ......+....+.|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 4444445555555555554443311111 12222333444444555554444332211 1222333444444444555
Q ss_pred HHHHHHHHH
Q 008147 355 WQKALELYE 363 (576)
Q Consensus 355 ~~~A~~~~~ 363 (576)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555544444
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.89 E-value=0.00032 Score=67.81 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 008147 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (576)
Q Consensus 193 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (576)
.+.+......++..+....+++++..++.+..........-..|..++++.|.+.|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34556666666666666677777777777666542222222234557777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008147 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (576)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (576)
|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776665555666666555555544
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.0012 Score=54.85 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=58.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHH
Q 008147 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEF 287 (576)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 287 (576)
.++...+...++.+.....+........-.+...+...|++++|...|+.+......+. ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555543211111112222334555566666666666666655441111 1233344555666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008147 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (576)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (576)
|+..++...... .....+......+...|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665533222 2333445555566666666666666654
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=0.00044 Score=66.87 Aligned_cols=123 Identities=15% Similarity=0.056 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008147 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (576)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (576)
.+.+......+++......+.+.+..++.+.... ....-..|..++++.|...|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455566666666666666777777777666554 11112234457777777777777777777777777777777777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 008147 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (576)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 387 (576)
|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766655555555555555544443
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.00074 Score=55.04 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=63.5
Q ss_pred hHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHhHHHHHHHHH
Q 008147 28 QLHSYN-RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCA 103 (576)
Q Consensus 28 ~~~~~~-~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 103 (576)
.++++- .|...|++++|.++|+-+...+ |++..++..++..+...|++++|+..|... .+.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344443 3347777778877777777776 677777777777777777777777777653 3456666777777777
Q ss_pred hcCChHHHHHHHHHHHHc
Q 008147 104 SSKDSEGAFQVLRLVQEA 121 (576)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~ 121 (576)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766543
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.73 E-value=0.0006 Score=51.37 Aligned_cols=77 Identities=16% Similarity=0.367 Sum_probs=50.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHCCCCCCHhhHHH
Q 008147 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGK--------VDAMFEVFHEMVNAGIEPNVHTYGA 167 (576)
Q Consensus 97 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (576)
..|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445556666888888888888888888 7888888888877665431 2234455555555555566666655
Q ss_pred HHHHHH
Q 008147 168 LIDGCA 173 (576)
Q Consensus 168 li~~~~ 173 (576)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=5.7e-05 Score=43.38 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008147 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (576)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (576)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=6.3e-05 Score=43.22 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 008147 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (576)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (576)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.0025 Score=50.71 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=7.5
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008147 136 TCAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 136 ~~~~~g~~~~a~~~~~~~~ 154 (576)
.+.+.|++++|.+.|..+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 11 LVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3333344444444444333
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.09 Score=52.85 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHH-HHH-hcHHHHHhhHHhhhcccCCCccchhhhHHHHHH
Q 008147 412 YSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIG-MCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 488 (576)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~-~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~ 488 (576)
|..+..-....|.++.|.+.--.+.+. .+-|...+|+.|.- +|. +.+.-|-...-....|..........+..+|+.
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~ 1103 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFR 1103 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHH
Confidence 344444456678888887766555544 56777777775542 222 223333222222223332222233456667777
Q ss_pred HHHH
Q 008147 489 VYRE 492 (576)
Q Consensus 489 ~~~~ 492 (576)
+|-+
T Consensus 1104 iFsk 1107 (1189)
T KOG2041|consen 1104 IFSK 1107 (1189)
T ss_pred Hhcc
Confidence 7754
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.00088 Score=50.52 Aligned_cols=79 Identities=18% Similarity=0.380 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCcCHhHHH
Q 008147 131 TTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVVFN 201 (576)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (576)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566666899999999999999998 889999999988877643 2446778888888888889988998
Q ss_pred HHHHHHHc
Q 008147 202 ALITACGQ 209 (576)
Q Consensus 202 ~ll~~~~~ 209 (576)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.0015 Score=49.28 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 008147 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (576)
Q Consensus 97 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 176 (576)
.+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444445555555555555554432 2233444445555555555555555555554432 222334444445555555
Q ss_pred CHHHHHHHHHHHH
Q 008147 177 QVAKAFGAYGIMR 189 (576)
Q Consensus 177 ~~~~A~~~~~~m~ 189 (576)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554444
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0038 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 008147 275 AINCCSQTGDWEFACSVYDDMTK 297 (576)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~ 297 (576)
+...+.+.|++++|.+.++++.+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 33333333444444444433333
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.0019 Score=48.59 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=9.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 008147 342 YSSLMGACSNAKNWQKALELYEHM 365 (576)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~~ 365 (576)
+..+...+...|+.+.|...+...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333344444444444444333
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0028 Score=61.25 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=39.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 008147 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (576)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (576)
..|++++|+..|+++++.. +.+...|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444444444444433 2233444444444455555555555555444432 2234444444444555555555555
Q ss_pred HHHHHHh
Q 008147 396 VLSDMKS 402 (576)
Q Consensus 396 ~~~~m~~ 402 (576)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555444
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0013 Score=58.94 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=66.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC---CHHhHHHHHHHHHhcCChH
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 109 (576)
|.+++.++|.+|++.|.+.++.. |.+.+++..-..++.+.|.++.|++-.+....- -..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 44457777777777777777766 677777777777777777777777766654422 2346777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLIT 135 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~ 135 (576)
+|.+.|++.++. .|+..+|-.=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 777777776653 565555544433
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.0041 Score=60.13 Aligned_cols=106 Identities=13% Similarity=0.168 Sum_probs=88.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 008147 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 424 (576)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~ 424 (576)
...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..++++... .| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 455678899999999999999865 456788889999999999999999999999884 55 56788888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008147 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (576)
Q Consensus 425 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 456 (576)
+++|...++++++ +.|+.......+.-|..
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 9999999999998 55666666666655543
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0027 Score=59.08 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 412 YSILLVACERKDDVEVGLMLLSQA 435 (576)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~ 435 (576)
|...+.-=.+.|+++.+..+.+++
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.00048 Score=48.44 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=47.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHhHHHH
Q 008147 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (576)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (576)
|++.|++++|+++|+++.+.. |.+..+...++.++...|++++|.+.++.+. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467899999999999998887 7788888888888888899999999998875 3443344433
No 164
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.082 Score=46.67 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-----H
Q 008147 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-----S 344 (576)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 344 (576)
.+.+.++..+.-.|.+.-....+++..+...+.++...+.+.+.-.+.|+.+.|...|+...+..-..+....+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777778888888888888887766677888888888888888888888888776543333333333 3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008147 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (576)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 416 (576)
....|.-.+++.+|...+.++...+ ..|+...|.-.-+..-.|+..+|++..+.|.. ..|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 3344556777888888888777654 34555555544455556888888888888877 356555544443
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.056 Score=49.07 Aligned_cols=184 Identities=10% Similarity=-0.018 Sum_probs=108.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 008147 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY---TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (576)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (576)
+...+-.....+...|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...+++..+.-..-...-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4444434455567789999999999999876422 23332 3456778889999999999999887643222223333
Q ss_pred HHHHHHh--c---------------CC---HHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 008147 168 LIDGCAK--A---------------GQ---VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (576)
Q Consensus 168 li~~~~~--~---------------g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (576)
.+.+.+. . .+ ..+|+..|+++.+. |=.+.-..+|.+.+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 3333331 1 11 12344444444443 33333344554444433221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (576)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (576)
.-. .--.+...|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|.++...+.
T Consensus 174 ----la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 000 11245666888888888888888777642 23345566777888888888888887776654
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0062 Score=56.75 Aligned_cols=143 Identities=13% Similarity=0.053 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008147 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (576)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (576)
.+|..++....+.+..+.|..+|.+..+.+.. +...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 57889999999999999999999999865432 33444444444 33356777799999998876 56678889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008147 349 CSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (576)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 417 (576)
+.+.++.+.|+.+|++.... +.++ ...|...+.-=.+.|+.+.+..+.+++.+ ..|+...+..+..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 99999999999999999865 2222 24899999988899999999999999887 3566444444443
No 167
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0033 Score=53.85 Aligned_cols=48 Identities=6% Similarity=0.105 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008147 338 GIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (576)
Q Consensus 338 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 385 (576)
+..+|..+++.|.+ .|..+=....+..|.+.|+..|..+|+.|+..+=
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 34445555554442 3444444555556666666666666666666544
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.38 E-value=0.00043 Score=51.14 Aligned_cols=47 Identities=17% Similarity=0.394 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 008147 353 KNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSD 399 (576)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (576)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444432210 1222233344444444444444444444
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0026 Score=57.04 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=63.9
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 008147 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (576)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~ 427 (576)
..+.+++++|+..|.+.++.. +.|.+-|..=..+|.+.|.++.|++-.+..+. +.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 345666777777777666653 34556666666667777777777766666655 3443 4567777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008147 428 GLMLLSQAKEDGVIPNLVMFKCIIGM 453 (576)
Q Consensus 428 a~~~~~~~~~~g~~~~~~~~~~li~~ 453 (576)
|.+.|++.++ +.|+..+|..=+..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 7777766665 56666666555444
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.36 E-value=0.021 Score=46.75 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=32.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (576)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (576)
..|++++|..+|+.+...+ +.+..-|-.|..++-..|++++|+..|.......+. |+..+-.+..++...|+.+.|.+
T Consensus 47 ~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444443333 223333333333444444444444444443333321 33333333334444444444444
Q ss_pred HHHH
Q 008147 326 ILQE 329 (576)
Q Consensus 326 ~~~~ 329 (576)
.|+.
T Consensus 125 aF~~ 128 (157)
T PRK15363 125 ALKA 128 (157)
T ss_pred HHHH
Confidence 4443
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.35 E-value=0.013 Score=50.23 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008147 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (576)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (576)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444444455555555555555443322111 2344444445555555555555555554432 11233344444444
Q ss_pred HccCCH
Q 008147 350 SNAKNW 355 (576)
Q Consensus 350 ~~~g~~ 355 (576)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.34 E-value=0.016 Score=58.74 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
.+...|..+.......|++++|...++++.+ +.|+...|..+...+...|+.++|.+.++++..
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566665555556777777777777776 346666777777777777777777777777766
No 173
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0029 Score=54.20 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=58.6
Q ss_pred CCCHHhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 008147 89 NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (576)
Q Consensus 89 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 163 (576)
..+-.+|..+++.+.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 44555555555555433 3444444555555555555555555555555432 2110 110
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCC
Q 008147 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (576)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 212 (576)
.+.++..- --.+.+-|++++++|...|+.||..++..++..+++.+.
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 01111111 123456788888899888889999998888888877654
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.018 Score=58.34 Aligned_cols=145 Identities=10% Similarity=-0.078 Sum_probs=99.7
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 008147 264 NIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQEA 330 (576)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~ 330 (576)
..+.+...|...+.+.... +....|..+|++..+.... ....+..+..++.... +...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4466778888888875443 2367899999998887533 3455555444443221 223344444443
Q ss_pred HHC-CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 008147 331 KNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (576)
Q Consensus 331 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (576)
... ....+...|..+.-.+...|++++|...+++..+.+ |+...|..+...+...|++++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 134455777777777777899999999999998865 6888899999999999999999999998876 56766
Q ss_pred HHHH
Q 008147 410 ITYS 413 (576)
Q Consensus 410 ~~~~ 413 (576)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6643
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.012 Score=50.43 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008147 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (576)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 382 (576)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4566666677778888888888888876543222 3567777888888888888888888877643 234556666666
Q ss_pred HHHcCCChhHHH
Q 008147 383 ALCDGDQLPKTM 394 (576)
Q Consensus 383 ~~~~~g~~~~A~ 394 (576)
.+...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 777666644333
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.16 Score=48.03 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=97.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008147 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (576)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (576)
.++...|+.++|..+--.+.+.+ ..+ .+..+++ ++.-.++.+.|...|.+.+..+ |+...- +.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~s----------k~ 241 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKS----------KS 241 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhH----------Hh
Confidence 34556677777777776666654 222 2333333 3345677777888777776653 333221 11
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 008147 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEV 396 (576)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~ 396 (576)
.-...+.+......| .-..+.|.+..|.+.|.+.+.. +.+|+...|........+.|+.++|+.-
T Consensus 242 ~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred HhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh
Confidence 111222233333333 2345778888888888877743 3455666677777777788888888888
Q ss_pred HHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 397 LSDMKSLGLCPNTIT---YSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 397 ~~~m~~~g~~p~~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
-++..+ .|..- |..-..++...+++++|.+-++...+.
T Consensus 310 c~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 310 CNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777664 23322 222234556678888888888887764
No 177
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.25 Score=49.89 Aligned_cols=322 Identities=11% Similarity=0.053 Sum_probs=179.2
Q ss_pred hHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008147 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (576)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (576)
-|.+++|.++|-.+..+|.. |..+.+.|++-...++++.--.. .-..-...++.+...++....+++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37799999988877766543 55666777877777666431100 0011135677788888888888888888766
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 008147 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (576)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 232 (576)
-.. ....+.++.+..++++-..+-+.+. -+....-.+..++.+.|.-++|.+.|-+.. .|
T Consensus 822 ~~~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s------~p 881 (1189)
T KOG2041|consen 822 CGD---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS------LP 881 (1189)
T ss_pred ccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc------Cc
Confidence 432 1234566666666666555554443 344555566677777788887777765432 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 008147 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-----------TPEVYTIAINCCSQTGDWEFACSVYDDMTK---- 297 (576)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---- 297 (576)
. ..+..|...+++.+|.++-+...-..+.. +.. .---|..+.+.|++-+|-+++.+|.+
T Consensus 882 k-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 882 K-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 2 23455666667766666654322111000 000 12235677888888888888888854
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008147 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (576)
Q Consensus 298 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (576)
++.+|-..--..++.++ -..+..++.+-.+....+|...+... +...|-..++.++.+..-. -.....|
T Consensus 956 K~~p~lr~KklYVL~Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHF 1024 (1189)
T KOG2041|consen 956 KYVPYLRLKKLYVLGAL-LVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHF 1024 (1189)
T ss_pred ccCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHH
Confidence 33333221111122221 12334455555555555554433221 2234444555555543322 1234455
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 378 NALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
-.|.+--...|..+.|+..--.+.+. .+-|....|+.+.-+.+....+.-.-+.|-++..
T Consensus 1025 milAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1025 MILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 55666667788999988765444332 3667777888776665555555555555554443
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.067 Score=48.56 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=21.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 008147 346 MGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (576)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (576)
...|.+.|.+..|..-++.+.+. +.+......-.++.+|...|..++|.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 33444444444444444444432 111122233334444444444444444433
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.0011 Score=48.82 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHhHHHHHHHHHhcCChHHHHHHH
Q 008147 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVL 115 (576)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 115 (576)
+|++++|+.+|+++.+......+..+...++..+.+.|++++|..++++.. +.+....-.+..++.+.|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 577888888888887766211133344445666667777777777776521 222233334456666777777777766
Q ss_pred HH
Q 008147 116 RL 117 (576)
Q Consensus 116 ~~ 117 (576)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.24 E-value=0.1 Score=48.78 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCC--CHhhHH
Q 008147 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GKVDAMFEVFHEMVNA----GIEP--NVHTYG 166 (576)
Q Consensus 94 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----~~~~--~~~~~~ 166 (576)
.|...+..|...|++..|-.++. .+...|... |++++|.+.|.+..+. + .+ -..++.
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~---------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~ 159 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLK---------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLL 159 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHH---------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHH
Confidence 34444555555555555544443 344456566 7888888888776542 2 11 133556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCc-----CHh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHH
Q 008147 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKP-----DRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIG 238 (576)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ 238 (576)
.+...+.+.|++++|.++|++........ +.. .|-..+-++...||...|.+.+++.....+++..+ .....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 67778888889999999888877643221 111 22223335566788888888888877654444333 23344
Q ss_pred HHHHHH
Q 008147 239 ALMKAC 244 (576)
Q Consensus 239 ~ll~~~ 244 (576)
.|+.+|
T Consensus 240 ~l~~A~ 245 (282)
T PF14938_consen 240 DLLEAY 245 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.033 Score=52.09 Aligned_cols=140 Identities=10% Similarity=0.153 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----CC
Q 008147 341 SYSSLMGACSNA-KNWQKALELYEHMKSI----KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-----PN 408 (576)
Q Consensus 341 ~~~~li~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~ 408 (576)
.+..+...|... |++++|.+.|++..+. + .+. ..++..+...+.+.|++++|+++|++....-+. ++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 444555667777 8899999988887642 2 111 345667788899999999999999998654222 22
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHhHHHHHHHHHhcHHHHHhhHHhhhcccCCCccchhhhH
Q 008147 409 TI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPN--LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483 (576)
Q Consensus 409 ~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~~~--~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 483 (576)
.. .|...+-.+...||+..|.+.+++.... ++..+ ......||++|... ....+.+++..|+.+.+.+ .|.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~--D~e~f~~av~~~d~~~~ld--~w~ 270 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG--DVEAFTEAVAEYDSISRLD--NWK 270 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT---CCCHHHHCHHHTTSS-----HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC--CHHHHHHHHHHHcccCccH--HHH
Confidence 22 2334445677789999999999998754 33333 33455566665431 1223445666677766533 455
Q ss_pred HH
Q 008147 484 SL 485 (576)
Q Consensus 484 ~~ 485 (576)
..
T Consensus 271 ~~ 272 (282)
T PF14938_consen 271 TK 272 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.21 E-value=0.0074 Score=51.53 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008147 236 TIGALMKACANAGQVDRAREVYKMIHK 262 (576)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (576)
++..+...+...|++++|...++....
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.015 Score=49.65 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008147 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (576)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (576)
..|..+...+...|++++|...|++.......| ...++..+...+...|++++|+..++...... +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345555555666666666666666665442221 12355555566666666666666666665542 222333444444
Q ss_pred HHH
Q 008147 348 ACS 350 (576)
Q Consensus 348 ~~~ 350 (576)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.039 Score=43.43 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 279 CSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (576)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (576)
+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443321 11222333334444444444444444433
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.01 E-value=0.0029 Score=44.39 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=22.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008147 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (576)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 156 (576)
.|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444432 223444444444444444444444444444443
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.045 Score=49.64 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008147 338 GIISYSSLMGACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 367 (576)
|...|-.|..+|...|+.+.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.94 E-value=0.0038 Score=43.31 Aligned_cols=52 Identities=8% Similarity=0.081 Sum_probs=21.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008147 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (576)
+.+.|++++|...|+++.+.. +-+...|..+..++.+.|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444332 1233344444444444444444444444443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.073 Score=41.91 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=8.1
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 008147 174 KAGQVAKAFGAYGIMRSKN 192 (576)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g 192 (576)
..|+.++|+.+|++....|
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~g 31 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAG 31 (120)
T ss_pred hcCCHHHHHHHHHHHHHcC
Confidence 3444444444444444433
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.54 Score=44.63 Aligned_cols=51 Identities=10% Similarity=-0.036 Sum_probs=35.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (576)
|...+...+.+|+..+...++.. |++..++..-+..+...+++++|.--.+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar 107 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDAR 107 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchh
Confidence 45567788889999998888876 6666666655555556667776655443
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.73 E-value=0.0061 Score=42.85 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 008147 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKD-DVEVGLMLLSQAKE 437 (576)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~ 437 (576)
..+|..+...+.+.|++++|+..|++..+. .| +...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555555555555555555555442 23 2334444555555555 45555555555444
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.70 E-value=0.0089 Score=42.00 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 008147 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVN 155 (576)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 155 (576)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555555555566666666665555543 334455555555555555 45555555555543
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.69 E-value=0.0081 Score=41.60 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=20.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (576)
Q Consensus 137 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (576)
+.+.|++++|.+.|+.+++.. +-+...+..+..++...|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444332 1133334444444444444444444444443
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.12 Score=46.99 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHHH
Q 008147 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISY 342 (576)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (576)
+.|...|-.|...|...|+++.|..-|.+..+... ++...+..+..++... ....++..+|+++.... +.++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 33444555555555555555555555555444321 1333333333332221 12334444444444432 2233333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 008147 343 SSLMGACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~~~~ 367 (576)
.-|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3344444444444444444444443
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.69 E-value=0.25 Score=49.42 Aligned_cols=47 Identities=28% Similarity=0.258 Sum_probs=28.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 008147 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (576)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (576)
...+-+-+--++++.++|.+|+.. ++...+.-.|.+.+|.++|.+..
T Consensus 613 dl~~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 613 DLRYLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred ccHHHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHcC
Confidence 334444445556666667555443 34455677788888888887643
No 195
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.65 E-value=0.62 Score=44.09 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008147 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (576)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (576)
+.+..|.-+...|+...|.++-.+. -.||...|-..+.+++..+++++...+-.. +-++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566667776666664443 235777777777777777777766654332 123456677777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 008147 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (576)
Q Consensus 351 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (576)
+.|...+|..+..++. +..-+..|.+.|++.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777776665521 1345566677777777766543
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.61 E-value=0.33 Score=42.78 Aligned_cols=166 Identities=11% Similarity=0.067 Sum_probs=78.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 008147 242 KACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG- 318 (576)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 318 (576)
..+...|++.+|...|+.+..... +-...+.-.++.++.+.|+++.|...+++..+.-+.....-+...+.+.+...
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 345566666666666666655421 11233445556666667777777777766655422211112222222221111
Q ss_pred ------------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008147 319 ------------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (576)
Q Consensus 319 ------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 386 (576)
...+|.. .+..++.-|=...-..+|...+..+.+. =...--.+..-|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred CccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 1112222 3334444444445555555544444320 01111224566777
Q ss_pred CCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 008147 387 GDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVG 428 (576)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g~~~~a 428 (576)
.|.+..|..-++.+.+. -|+. .....++.++.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777777664 3332 3446666777777776644
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.53 E-value=0.13 Score=48.40 Aligned_cols=284 Identities=12% Similarity=0.003 Sum_probs=153.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCch---HHHHHHHHHHHhhhHHHHHHHHHhhh-------CCC--CCHHhHHHHHH
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMD---KVYHARFFNVCKSQKAIKEAFRFFKL-------VPN--PTLSTFNMLMS 100 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~--~~~~~~~~li~ 100 (576)
..|++.|+...-+.+|+..++.|. .+- ..++.-++.++...+++++|+++... +.+ ....+...|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 578899999999999999999984 222 22344455566677889999887532 110 11222333444
Q ss_pred HHHhcCChHHHHHHHHH----HHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 008147 101 VCASSKDSEGAFQVLRL----VQEAGL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~----m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (576)
.+--.|.+++|+..-.+ ..+.|- ......+..|...|...|+--.... -.+.|-.+..+ -.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev-~~--------- 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEV-TS--------- 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHH-HH---------
Confidence 44445666666544322 112221 1122334445555554443210000 00001011110 00
Q ss_pred CCHHHHHHHHHHHHh----CCC-CcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC--CCCC-CCCHHHHHHHHHHHHhc
Q 008147 176 GQVAKAFGAYGIMRS----KNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPV-DPDHITIGALMKACANA 247 (576)
Q Consensus 176 g~~~~A~~~~~~m~~----~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~~~~~~~~ll~~~~~~ 247 (576)
.++.|.+.|.+-.+ .|- -.--..|-.|...|.-.|+++.|+...+.-... ..|- ......+..+.+++.-.
T Consensus 170 -al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 170 -ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 12233333332211 110 001134555666666678888888776543211 1111 12234577788888888
Q ss_pred CChHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhc
Q 008147 248 GQVDRAREVYKMIHKY----N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GVIPDEVFLSALIDFAGHA 317 (576)
Q Consensus 248 g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~ 317 (576)
|+++.|.+.++..... | -.....+..+|.+.|.-..++++|+.++.+-+.. +..-....+-++..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999998888765332 2 1223456777888888888888998887664321 1112446677888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 008147 318 GKVEAAFEILQEAKN 332 (576)
Q Consensus 318 g~~~~a~~~~~~~~~ 332 (576)
|..++|+.+...-.+
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877665544
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.53 E-value=0.51 Score=41.63 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 008147 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITAL 384 (576)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~ 384 (576)
.++.-|-...-..+|...+..+.+.= ...--.+...|.+.|.+..|..-++.+++. -|+. ...-.++.+|
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHH
Confidence 33333444445555555555443320 111223566677888888888777777764 2332 3345566677
Q ss_pred HcCCChhHH
Q 008147 385 CDGDQLPKT 393 (576)
Q Consensus 385 ~~~g~~~~A 393 (576)
.+.|..+.|
T Consensus 189 ~~l~~~~~a 197 (203)
T PF13525_consen 189 YKLGLKQAA 197 (203)
T ss_dssp HHTT-HHHH
T ss_pred HHhCChHHH
Confidence 777766643
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=96.51 E-value=0.032 Score=45.93 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=49.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCChHHHHH
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQ 113 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~ 113 (576)
..|++++|..+|.-+...+ +++..+...++..+...+.+++|+..|... ...|+..+-.....+...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 5666666666666666655 455556566666666666666666666532 23334444445555666666666666
Q ss_pred HHHHHHH
Q 008147 114 VLRLVQE 120 (576)
Q Consensus 114 ~~~~m~~ 120 (576)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 6666554
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.51 E-value=0.051 Score=51.02 Aligned_cols=265 Identities=15% Similarity=0.073 Sum_probs=148.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH--HC--CCC-CCHhhHHHHHHH
Q 008147 101 VCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMV--NA--GIE-PNVHTYGALIDG 171 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~--~~--~~~-~~~~~~~~li~~ 171 (576)
-+++.|+......+|+..++.| .-|. ..|..|-++|.-.+++++|++.+..=+ .+ |-. -...+...|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4778888888888888888877 3333 346667777777888888887654311 10 100 011122233444
Q ss_pred HHhcCCHHHHHHHHHH----HHhCCCC-cCHhHHHHHHHHHHccCC--------------------HHHHHHHHHHHhhC
Q 008147 172 CAKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAE 226 (576)
Q Consensus 172 ~~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~ 226 (576)
+--.|.+++|+-.-.+ ..+.|-. .....+..+...|...|+ ++.|.++|.+=.+-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666543221 1122211 112334445555544432 23344444321110
Q ss_pred C--CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 008147 227 V--HP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK- 297 (576)
Q Consensus 227 ~--~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 297 (576)
. .+ --.--..|..|.+.|.-.|+++.|+...+.-.. .|-. .....+..+.+++.-.|+++.|.+.|+.-..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 0 00 001112456666667777888888877654322 2211 1234677788888888999999888876432
Q ss_pred ---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008147 298 ---KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G-ISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (576)
Q Consensus 298 ---~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 366 (576)
.|- ........++...|.-..++..|+.++.+-... + ..-....+.+|..+|...|..++|+.+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 113345566777777778888888887753321 1 11235677888888888888888887766544
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.48 E-value=0.077 Score=48.60 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCcCHhHHH
Q 008147 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFN 201 (576)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~ 201 (576)
..|...+..+.+.|++++|...|+.+++.- |+ ...+-.+...|...|++++|...|+.+.+.- -+.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 344444444455567777777777766652 32 2355566666777777777777777776541 011133344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhC
Q 008147 202 ALITACGQSGAVDRAFDVLAEMNAE 226 (576)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (576)
.+...+...|+.++|.++|+++...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566667777777777776654
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.46 E-value=0.059 Score=49.36 Aligned_cols=61 Identities=21% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 238 GALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
..+...|...|++++|...|+.+.+.. -+..+..+-.+...+...|+.++|.++|+.+.+.
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444445555544444444321 0112233333444444555555555555555443
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.42 E-value=0.02 Score=40.73 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=23.9
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 008147 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (576)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (576)
|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444432 22333444444444444444444444444443
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.41 E-value=0.47 Score=39.80 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=51.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHHH
Q 008147 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIG 238 (576)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 238 (576)
|++...-.|..+..+.|+..+|...|++...--..-|......+..+....++...|...++.+.+... +-.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 444445555555666666666666666555433333444555555555555666666665555543210 01122 223
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 008147 239 ALMKACANAGQVDRAREVYKMIHKY 263 (576)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (576)
.+...+...|.+..|+.-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3444555555555555555555443
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.40 E-value=1 Score=43.49 Aligned_cols=422 Identities=12% Similarity=0.103 Sum_probs=195.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHHHHH---hhhCCCCCHHhHHHHHHH--HHhcCC
Q 008147 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEAFRF---FKLVPNPTLSTFNMLMSV--CASSKD 107 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~li~~--~~~~~~ 107 (576)
+++++.+|-++|.++.+.-.-. ....+.+.++.++.. ++.+.-... +++-.+ ...|-.+..+ +-+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 8999999999999987654211 112233344444332 223322222 222222 2234444433 456788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHH
Q 008147 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (576)
Q Consensus 108 ~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li 169 (576)
++.|++.+..-..+ +-.| |-..-+..+..+.+.|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 89998888766654 2221 2222345677888999999999888887754 3447888888866
Q ss_pred HHHHhcC--------C-------HHHHHHHHHHHHhC------CCCcCHhHHHHHHHHHHcc--CCHHHHHHHHHHHhhC
Q 008147 170 DGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAE 226 (576)
Q Consensus 170 ~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 226 (576)
-++++.= . ++.+.-...+|... .+.|.......++.-..-. .+..--++++.....
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~- 253 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN- 253 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-
Confidence 6665431 1 23333333344322 2233333333333322211 222333344433322
Q ss_pred CCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008147 227 VHPVDPDHI-TIGALMKACANAGQVDRAREVYKMIHKYNI----KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (576)
Q Consensus 227 ~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (576)
.-+.|+.. +...+...+.+ +.+++..+-+.+....+ ..-..++..++....+.++...|...+.-+.-....
T Consensus 254 -~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 -FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred -hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 12344432 22333333333 33333332222211110 001245666677777777777666666555433211
Q ss_pred CCH-----HHHHHHHHHHH-h---cCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHccCC-HHHHHHHHHHHHhCC
Q 008147 302 PDE-----VFLSALIDFAG-H---AGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKN-WQKALELYEHMKSIK 369 (576)
Q Consensus 302 p~~-----~~~~~li~~~~-~---~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~ 369 (576)
... .+-..+.+..+ . .-+...-+.++......++.-. +...-.-..-+-+.|. -++|..+++.+.+..
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft 410 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT 410 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Confidence 000 01112222222 1 1122223333333333322110 0111111222334444 666777777666532
Q ss_pred CCCCHHHHHHHH----HHHHc---CCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 008147 370 LKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPN----TITYSILLVA--CERKDDVEVGLMLLSQAK 436 (576)
Q Consensus 370 ~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~a--~~~~g~~~~a~~~~~~~~ 436 (576)
.-|..+-|.+. ..|.+ ...+.+-+.+-+-..+.|+.|- ...-+.+.+| +..+|++.++.-.-..+.
T Consensus 411 -~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 411 -NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22333322221 22222 2233444444444455666663 2333444333 456777777766666665
Q ss_pred HcCCCCCHHhHHHHHHH--HHhcHHHHHhhHHhh
Q 008147 437 EDGVIPNLVMFKCIIGM--CSRRYEKARTLNEHV 468 (576)
Q Consensus 437 ~~g~~~~~~~~~~li~~--~~~~~~~a~~~~~~~ 468 (576)
+ +.|.+.+|..+--. ..++|.+|.+....+
T Consensus 490 ~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 490 K--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred H--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5 66766666543221 123677666665443
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.29 E-value=0.55 Score=39.39 Aligned_cols=128 Identities=10% Similarity=0.007 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHH
Q 008147 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPTVSTMNA 379 (576)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 379 (576)
.|+...-..+..++...|+..+|...|++...--+.-|....-.+..+....+++..|...++.+-+.+. ..++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555556666667777777777777777766654555666666677777777777777777776665320 011223344
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430 (576)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 430 (576)
+...|...|++.+|..-|+.... .-|+...-.....-+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 55667777777777777777766 34555444444444556665555544
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=1.6 Score=44.79 Aligned_cols=107 Identities=13% Similarity=0.057 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008147 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (576)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 386 (576)
.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... .+.-|...+..|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3333444455566666655554432 3455566666666666666666555433322 23445556666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008147 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (576)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 432 (576)
.|+.+||.+.+.+.. +.. -...+|.+.|++.+|.++-
T Consensus 757 ~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 666666666665432 111 3445566666666665544
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.25 E-value=0.03 Score=46.43 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (576)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (576)
.++..+...|++++|..+...+.... +.+...|..+|.+|...|+...|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444555555555555555555443 334555555555555555555555555554
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.038 Score=45.85 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=55.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 008147 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHTYG 166 (576)
Q Consensus 93 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 166 (576)
.....++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|+.+.+ .|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345667778889999999999999999886 67889999999999999999999999998753 48888876543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.11 E-value=0.49 Score=47.44 Aligned_cols=251 Identities=12% Similarity=0.151 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH---------HHHHHHCCCCCCHhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCc
Q 008147 127 CKLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKP 195 (576)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p 195 (576)
...+.+=+..|...|.+++|.++ ++.+... ..+...++..=.+|.+-.+. -+...-+++++++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 33444455566677777776543 2222111 11233344455566655543 34444566777788778
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHh--cCCCCC
Q 008147 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-----ALMKACANAGQVDRAREVYKMIHK--YNIKGT 268 (576)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~ 268 (576)
+.... ...++-.|++.+|-++|.+--.+. .-...|+ -...-+...|..++-..+.++-.+ +++...
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~G~en----RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRSGHEN----RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHcCchh----hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 76643 344666788888888887642210 1011111 112233344444433333322211 111111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008147 269 PEVYTIAINCCSQTGDWEFACSVYDD------MTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (576)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (576)
.+....+...|+.++|..+.-+ +.+.+- ..+..+...+...+.+...+..|-++|..|-..
T Consensus 707 ----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 707 ----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred ----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 1233444556666666554311 111111 113345555555556666777788888766432
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHcCCChhHHHHHHHHHH
Q 008147 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-----------TMNALITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (576)
..+++.....+++++|..+-++..+. .||+. -|...-.+|.+.|+-.+|..+++++.
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 34667778888888888887766542 34321 12223345555666666666665554
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.06 E-value=0.049 Score=38.63 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008147 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 156 (576)
.|.+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555543 334444444555555555555555555555544
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.06 E-value=0.14 Score=40.79 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=30.6
Q ss_pred CCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 008147 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (576)
Q Consensus 192 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (576)
...|+..+..+++.+|+..+++..|+++++..... .+++-+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 34556666666666666666666666666665554 345555556665555443
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.94 E-value=0.12 Score=41.22 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcCHhHHHHHHHHHHc
Q 008147 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQ 209 (576)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~ 209 (576)
..|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4688888999999999999999999999888764 677778888888865433
No 214
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=1.9 Score=44.94 Aligned_cols=146 Identities=12% Similarity=0.063 Sum_probs=86.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHHhHHHHHHHHHhcCChHHH
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGA 111 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a 111 (576)
+.|++..-+.-|+.+-+.--..+ .....++.-.+..+...|++++|...|-+.. .-++ ..+|.-|....+..+-
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHH
Confidence 34455566666666554322111 1234466666777788899999998876533 1111 1345556666667777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008147 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (576)
Q Consensus 112 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (576)
-..++.+.+.|+. +...-..|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+-.++|..+-.+
T Consensus 417 t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 417 TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 7788888888854 44445678899999999887776665543 2211 01123444555555555555544433
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.53 Score=42.76 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=91.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC-HHhH---HHHHHHHHhcCCh
Q 008147 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTF---NMLMSVCASSKDS 108 (576)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~---~~li~~~~~~~~~ 108 (576)
..++..|++.+|..+|....... +.+......+...+...|+.+.|..++..+|... ..-| ..-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34567888888888888888876 5666666777778888888888888888877321 1112 2234444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHH
Q 008147 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKA 181 (576)
Q Consensus 109 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A 181 (576)
.+...+-+..-.. +-|...-..+...+...|+.+.|.+.+-.+.++. -..|...-..|+..+.-.|..+.+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444444432 3366666677777888888888877766665432 123555666666666666643333
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=95.77 E-value=0.93 Score=37.56 Aligned_cols=91 Identities=9% Similarity=-0.059 Sum_probs=59.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 008147 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (576)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (576)
....+...|++++|..+|.-+...+.. +..-+..|..++-..+++++|...|......+. -|+..+-....+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 344456677888888888777665543 455556666666677778888777776655432 233334455667777788
Q ss_pred HHHHHHHHHHHHh
Q 008147 355 WQKALELYEHMKS 367 (576)
Q Consensus 355 ~~~A~~~~~~~~~ 367 (576)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777765
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.71 E-value=0.86 Score=45.32 Aligned_cols=172 Identities=12% Similarity=0.149 Sum_probs=100.0
Q ss_pred cccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 008147 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (576)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 100 (576)
.....+++..-|...+-+++++++.++.+.-.-...+| ......+...+.+.|..+.|+++-. |+ ..-..
T Consensus 257 ~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFe 326 (443)
T PF04053_consen 257 ISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFE 326 (443)
T ss_dssp EEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHH
T ss_pred EEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhH
Confidence 34456667777888888888888777775111111112 3335566667777787787776522 22 22344
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 008147 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 180 (576)
...+.|+++.|.++.+. ..+...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+.
T Consensus 327 LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 45667788877776542 33667788888888888888888887776642 5666667777787777
Q ss_pred HHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 008147 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (576)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (576)
-.++-+.....| -++..+.++.-.|+.++..+++.+.
T Consensus 392 L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 392 LSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777776666554 2455555566667777777776653
No 218
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=0.46 Score=39.30 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=78.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHhHH--HHH---HHHHhcC
Q 008147 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFN--MLM---SVCASSK 106 (576)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~li---~~~~~~~ 106 (576)
.|.+.++.++|+.-|.++.+.|.-............+..+.|+...|...|+.+.. +.+.... .-+ -.+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 45588999999999999999987655555555666677778888889998887632 1111111 111 1244566
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (576)
Q Consensus 107 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 155 (576)
.++......+-+...+-+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7776666666555444344444555566666667777777777776654
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.56 E-value=0.88 Score=35.81 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=21.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 008147 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (576)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (576)
+...+.|.-+.-.+++..+.+.+ ++++...-.+..+|.+.|+..++-+++.+..+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444444444444443211 3344444444444444444444444444444443
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.55 E-value=0.037 Score=39.96 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 376 TMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (576)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (576)
+++.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554321 011 11 3345555566666666666666666554
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.49 E-value=2.5 Score=40.59 Aligned_cols=172 Identities=15% Similarity=0.081 Sum_probs=86.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008147 239 ALMKACANAGQVDRAREVYKMIHKYN---IKGTPEVYTIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (576)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (576)
.++-+|....+++...++.+.+.... +...+.+-....-++.+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666777777777777665541 11222222333444445 6666777777666544444455556555554
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCC-
Q 008147 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST---MNALITALCDGD- 388 (576)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g- 388 (576)
.|-.. ..+.+. -+.. .+++|...|.+.-+. .||..+ +..|+.......
T Consensus 226 IyKD~------------~~~s~~-~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDL------------FLESNF-TDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHH------------HHHcCc-cchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 43211 001110 0111 155666666655543 233211 112222211111
Q ss_pred ChhHHHHHH---HH-HHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 389 QLPKTMEVL---SD-MKSLG---LCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 389 ~~~~A~~~~---~~-m~~~g---~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
.-.+..++- .. +-+.| -..+-..+.+++.++.-.|++++|.+..++|.+.
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111222222 11 11223 2245566788899999999999999999999975
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.46 E-value=0.14 Score=45.73 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=75.2
Q ss_pred HHhhhCC--CCCHHhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 82 RFFKLVP--NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 82 ~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 154 (576)
+.|..++ +.|-.+|-..+..+... +..+-....++.|.+.|+..|..+|+.|++.+-+-.-
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------ 122 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------ 122 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc------------
Confidence 3444444 45666777777665543 4556666667778888888888888887776543221
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCH-HHHHHHHHHH
Q 008147 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEM 223 (576)
Q Consensus 155 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 223 (576)
.|.. .+....-.|- .+-+-+++++++|...|+.||..+-..|+.++++.+-. .+..++.-.|
T Consensus 123 ----iP~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 123 ----IPQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred ----ccHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 1111 1222222222 22345788889999899999988888888888887653 3333443333
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.43 E-value=0.047 Score=39.37 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008147 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (576)
.+++.+...|...|++++|+..|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666665555421 10 111 3445556666666666666666666543
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.17 E-value=3.3 Score=40.06 Aligned_cols=80 Identities=10% Similarity=0.168 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008147 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (576)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 134 (576)
|.+...+..+++.+..++..++.+++++++..|-+ ..|..-+++-...+++.....+|.+.+...+ +...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 56666666677777777888888888888765543 3677777766667788888888877776533 344555555
Q ss_pred HHHHh
Q 008147 135 TTCAK 139 (576)
Q Consensus 135 ~~~~~ 139 (576)
+.-.+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 43333
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.11 E-value=0.12 Score=49.98 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=71.0
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 008147 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (576)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 411 (576)
+.+...++.+..+|.+.|++++|...|++.++.+ |+. .+|..+..+|...|+.++|+..+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 4456788999999999999999999999988754 553 358899999999999999999999988742 12 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 008147 412 YSILLV--ACERKDDVEVGLMLLSQAKEDGV 440 (576)
Q Consensus 412 ~~~ll~--a~~~~g~~~~a~~~~~~~~~~g~ 440 (576)
|..+.. .+....+.++..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 322211 11223344566777777777664
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.09 E-value=3.4 Score=39.74 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
+-..+.+++.+..-.|++++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3344566666677777777777777777665
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.08 E-value=0.45 Score=46.26 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=33.1
Q ss_pred CCcccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHH---HHHHHHHHHhhhHHHHHHHHHhhh
Q 008147 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV---YHARFFNVCKSQKAIKEAFRFFKL 86 (576)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~ 86 (576)
...|.+.......-..|.+.|++++|+..|++.++.+ |++.. .+..++..+...|+.++|+..+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444455555555555566666666666666666655 43331 233333334444444444444433
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=2.7 Score=38.44 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=75.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHH
Q 008147 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (576)
Q Consensus 137 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 216 (576)
....|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566666666666665543 2234445556666666666666666666665432111122222223334444444444
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHH
Q 008147 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFA 288 (576)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a 288 (576)
..+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+. -.+...-..|+..+.--|.-+.+
T Consensus 223 ~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 223 QDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444443321 22444555566666777777777666655544422 22345566666666666543333
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.06 E-value=0.77 Score=45.65 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=35.3
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008147 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (576)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (576)
+...|..|.....+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.....+- ++..
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~a 408 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIA 408 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHH
Confidence 34455555555555555555555554421 123344444455555444444444444431 3333
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 008147 276 INCCSQTGDWEFACSVYD 293 (576)
Q Consensus 276 i~~~~~~g~~~~a~~~~~ 293 (576)
..++...|+.++..+++.
T Consensus 409 f~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333444445554444443
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.96 E-value=3.4 Score=39.17 Aligned_cols=125 Identities=17% Similarity=0.106 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHc
Q 008147 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM---KSIKLKPTVSTMNALITALCD 386 (576)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~li~~~~~ 386 (576)
-..++.+.|++.++-.+++.+-+....|++. ++..+.+.|+.- ..-+++. .+.. +.+..+--.+..+-..
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta--~dRlkRa~~L~slk-~nnaes~~~va~aAld 341 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTA--LDRLKRAKKLESLK-PNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcH--HHHHHHHHHHHhcC-ccchHHHHHHHHHHHh
Confidence 3456777888888888888888776555532 233355666532 2222222 2211 3345666667777777
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC
Q 008147 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLMLLSQAKEDGVIPN 443 (576)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~-~~g~~~~a~~~~~~~~~~g~~~~ 443 (576)
.|++..|..--+.... ..|....|..|.+.-. ..|+-.++++.+.+..+..-+|.
T Consensus 342 a~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 342 AGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred ccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 8888877776666555 5677777777776544 44888888888888877544443
No 231
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.85 E-value=3.7 Score=38.97 Aligned_cols=109 Identities=11% Similarity=0.161 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008147 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (576)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (576)
+.+..+.-+...|+...|.++-... . .|+..-|-..+.+++..++|++-.++... ++ .+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHH
Confidence 4455566777889888888776554 2 57778899999999999999987775443 21 2366889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008147 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (576)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (576)
..|...+|..+...+ .+..-+..|.++|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888762 225567889999999999876444
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.56 Score=44.56 Aligned_cols=140 Identities=16% Similarity=0.089 Sum_probs=87.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHH
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 111 (576)
-|.+.+.|++..|...|++....= ...... +.++.... ...-..+++.+...+.+.+++..|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l--~~~~~~------------~~ee~~~~----~~~k~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL--EYRRSF------------DEEEQKKA----EALKLACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh--hccccC------------CHHHHHHH----HHHHHHHhhHHHHHHHhhhhHHHH
Confidence 356678889999998888765421 000000 00111110 011234566666777888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 008147 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRS 190 (576)
Q Consensus 112 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 190 (576)
++.-...++.+ ++|+-..-.-..++...|+++.|+..|+.+.+.. +-|-.+-+.|+.+-.+.... +...++|..|..
T Consensus 277 i~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 277 IESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888776 6677777777888888888888888888888763 22344445555554444443 344677777765
Q ss_pred C
Q 008147 191 K 191 (576)
Q Consensus 191 ~ 191 (576)
.
T Consensus 355 k 355 (397)
T KOG0543|consen 355 K 355 (397)
T ss_pred c
Confidence 3
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.47 Score=45.02 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008147 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (576)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 419 (576)
.+++.|.-+|.+.+++.+|++.-.+.++.+ ++|+...-.=..+|...|+++.|+..|+++++ +.|+......=+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 345556666777777777777777766655 45665555556666677777777777777766 466555544444444
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.77 E-value=1.9 Score=43.60 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=113.8
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCH-----hHHHHHHHHHHc----cCCHHHH
Q 008147 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDR-----VVFNALITACGQ----SGAVDRA 216 (576)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a 216 (576)
.-+|.-+... +|| ....+++..+-.|+-+.+++.+.+..+.+ +.-.. -.|+.++..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555543 133 35567777777889999998888776542 22111 234444444443 4578899
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008147 217 FDVLAEMNAEVHPVDPDHITIGA-LMKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACSVY 292 (576)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (576)
.+++..+... -|+...|.. -.+.+...|++++|.+.|+...... . ......+--+.-.+.-..+|++|.+.|
T Consensus 253 ~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 253 EELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 9999999875 466555443 3466778899999999998754321 1 112234455666788889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 008147 293 DDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (576)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~~ 332 (576)
..+.+..-. +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999886432 34444444443 3456777 888899887653
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.76 E-value=3.9 Score=38.82 Aligned_cols=263 Identities=15% Similarity=0.121 Sum_probs=146.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHH--HccCCHHHHHHHHHHHhhCCCCCCCCHHH--HHHHHHHHHhcCCh
Q 008147 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC--GQSGAVDRAFDVLAEMNAEVHPVDPDHIT--IGALMKACANAGQV 250 (576)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~ 250 (576)
.|+-..|.+.-.+..+. +..|....-.++.+- .-.|+++.|.+-|+.|.. .|.... ...|.-..-+.|+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45555665554443321 222333333344332 334777777777777764 233222 22333334466777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHH---hcCCHHHHH
Q 008147 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEV--FLSALIDFAG---HAGKVEAAF 324 (576)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~--~~~~li~~~~---~~g~~~~a~ 324 (576)
+.|.++-+..-..- +.-+..+.+.+...|..|+++.|+++.+.-.... +.++.. .-..|+.+-. -..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 77777666654432 2234567777777788888888888777654432 233332 1222222211 123455666
Q ss_pred HHHHHHHHCCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 008147 325 EILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (576)
..-.+..+. .||.. .-..-..++.+.|++.++-.+++.+-+.. |.+..+... .+.+.|+ .++.-+++....
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHHHHHHH
Confidence 665555543 33322 22234567888999999999999888754 444444332 2344454 333333333211
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 008147 404 -GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (576)
Q Consensus 404 -g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 454 (576)
.++|| ..+...+..+....|++..|+.--+.... ..|....|-.|-+.-
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIe 372 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIE 372 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHH
Confidence 15564 45666777888888999888877777665 578888887776653
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.59 E-value=1.6 Score=34.35 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=55.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCC
Q 008147 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT---YGALIDGCAKAGQ 177 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 177 (576)
+.+..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+++..+..-..+... |..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3556677777777777666542 44566777777777777777777777766665422222222 2222334556677
Q ss_pred HHHHHHHHHHHHhCC
Q 008147 178 VAKAFGAYGIMRSKN 192 (576)
Q Consensus 178 ~~~A~~~~~~m~~~g 192 (576)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666555
No 237
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=3.4 Score=36.99 Aligned_cols=132 Identities=10% Similarity=0.054 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-----
Q 008147 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA----- 239 (576)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----- 239 (576)
-+.++..+.-.|.+.-....+.+.++...+.++.....|.+.-.+.||.+.|...|++..+... ..|..+.+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~--kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ--KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh--hhhccchhHHHHhh
Confidence 3445555555566666666666666654444555566666666666666666666665543211 112222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008147 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (576)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (576)
....|.-.+++..|...+.++...+ +.++..-|.-.-+..-.|+..+|++..+.|.+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2223444555666666666665554 3344444433333444566666666666666653
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.45 E-value=0.36 Score=43.26 Aligned_cols=117 Identities=20% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHh
Q 008147 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (576)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (576)
..|-.+|...+..+... +.++-....++.|.+.|++.|..+|+.|++.+-+-.- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 34555666666555433 4566677778888888888888888888876543221 111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 008147 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIH 261 (576)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 261 (576)
.+..++--|- .+-+-+++++++|.. +|+.||..+-..|++++.+.+-. .+..++.--|.
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1222222222 223457889999986 58999999999999999988864 33444443343
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=94.41 E-value=3.3 Score=40.59 Aligned_cols=109 Identities=14% Similarity=0.062 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 008147 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLML 431 (576)
Q Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~ 431 (576)
.+..+|.++-++..+.+ +-|......+..++...++++.|..+|++... +.||. .+|......+...|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567777888888776 56777777777777888889999999999887 56764 5677777778889999999999
Q ss_pred HHHHHHc-CCCCCHHhHHHHHHHHHh-cHHHHHhh
Q 008147 432 LSQAKED-GVIPNLVMFKCIIGMCSR-RYEKARTL 464 (576)
Q Consensus 432 ~~~~~~~-g~~~~~~~~~~li~~~~~-~~~~a~~~ 464 (576)
+++..+. ....-..+....|++|.. .++++..+
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKL 429 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHH
Confidence 9987763 222223334444556554 44444433
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.35 E-value=2.4 Score=34.64 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 008147 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (576)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (576)
+..+...+.......+++.+.+.+ ..+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333344444444444444333 1333344444444443
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.26 E-value=1.9 Score=34.83 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=46.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 008147 99 MSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (576)
Q Consensus 99 i~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 176 (576)
.....+.|++++|.+.|+.+..+-. +-...+--.|+.+|.+.+++++|...+++.++........-|-..+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3344566777777777777776521 12344555677777777777777777777777643322334555555544433
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.89 E-value=6 Score=39.07 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (576)
-..|..++.+.|+.++|.+.+++|.+.... -+..+...|+.++...+.+.++..++.+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334555556667777777777777654211 1233556677777777777777777766543
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=2.3 Score=39.32 Aligned_cols=151 Identities=11% Similarity=-0.019 Sum_probs=86.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH----HHHHHHHhcCC
Q 008147 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG----ALMKACANAGQ 249 (576)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~g~ 249 (576)
-.|...+|-..++++.+. .|.|..++...-.+|...|+.+.....++++... ..+|...|. .+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666667777654 3556666666667777777777777777766543 234433322 22333446777
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008147 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---GVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (576)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (576)
+++|++.-++..+.+ +.|..+..++...+-..|++.++.+...+-... +-..-...|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 777777777777665 555556666666667777777777665443221 0000011122222234445667777777
Q ss_pred HHH
Q 008147 327 LQE 329 (576)
Q Consensus 327 ~~~ 329 (576)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 764
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=1.3 Score=39.97 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=24.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008147 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (576)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (576)
|..++...|++++|..+|..+.+..+..+--...+-.|..+..+.|+.++|..+|+.+.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444444444444444444444432111111112333333344444444444444444443
No 245
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.58 E-value=6.5 Score=36.88 Aligned_cols=132 Identities=18% Similarity=0.276 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CcCHHHHHHHHHHHHccCC--
Q 008147 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH--A----GKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN-- 354 (576)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 354 (576)
++...+++.|.+.|+.-+..+|.+....... . .....|..+++.|++..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455667777777777666555543333222 1 235677888888887653 2334445555433 3333
Q ss_pred --HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCC-C--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008147 355 --WQKALELYEHMKSIKLKPTV-STMNALITALCDGD-Q--LPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (576)
Q Consensus 355 --~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g-~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 419 (576)
.+.+..+|+.+.+.|+..+- ..+.+-+-++.... . ..++.++++.+.+.|+++....|..+.-..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 34566777777776655432 23333333333221 1 446778888888888888777776665433
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.51 E-value=1 Score=41.16 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHhHHHHH
Q 008147 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (576)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 203 (576)
++..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556667777777777777777777664 44677777778888888877777777777654 3677766666555
Q ss_pred HHH
Q 008147 204 ITA 206 (576)
Q Consensus 204 l~~ 206 (576)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=93.49 E-value=8.4 Score=37.92 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008147 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (576)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 365 (576)
.+|.++-++..+.+.. |......+..+....++++.|...|++....+ +....+|......+.-+|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555554433 55555555555555555666666666555543 112233333333344455566666555554
Q ss_pred Hh
Q 008147 366 KS 367 (576)
Q Consensus 366 ~~ 367 (576)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 43
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=2.5 Score=39.10 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=109.4
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCH
Q 008147 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGDW 285 (576)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 285 (576)
..|+..+|-..++++... .+.|...+...-.+|.-.|+.+.-...++++... +++-...+...+.-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 457777777778887764 5677778888888999999999988888888654 2222223334445566788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 008147 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELY 362 (576)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (576)
++|.+.-++..+.+.. |...-.++...+...|+..++.++..+-...- .-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999998887644 77788888888888999999998876544321 1111223334444566778999999999
Q ss_pred HHHH
Q 008147 363 EHMK 366 (576)
Q Consensus 363 ~~~~ 366 (576)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8543
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.43 E-value=1.5 Score=39.56 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=51.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHH
Q 008147 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAI 276 (576)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li 276 (576)
.|+.-+. +.+.|++..|.+.|.......++-.-....+--|..++...|++++|..+|..+.+... +.-+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544443 33455566666666666554221111112333356666666666666666655554321 11234555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 008147 277 NCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666666666666666666554
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.37 E-value=3.2 Score=32.80 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (576)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (576)
...+..+.+.|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++-+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555555555555555555432 234555555555556666666666666655555553
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.29 E-value=2 Score=33.78 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=60.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 008147 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDD 424 (576)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~a~~~~g~ 424 (576)
+.+..|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++..+..-.-+. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566778888888887776542 446677787778888888888888877776653111122 223334456777888
Q ss_pred HHHHHHHHHHHHHcC
Q 008147 425 VEVGLMLLSQAKEDG 439 (576)
Q Consensus 425 ~~~a~~~~~~~~~~g 439 (576)
.+.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777665
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.21 E-value=3.4 Score=38.75 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=71.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHH----
Q 008147 239 ALMKACANAGQVDRAREVYKMIHKYNIK-----GTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEV---- 305 (576)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~---- 305 (576)
++..++...+.++++++.|+...+.... ....++..|.+.|.+..++++|.-......+ .++.--..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3455556666677777777665443111 1234677777777777777777655544322 22221111
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008147 306 -FLSALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (576)
Q Consensus 306 -~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 366 (576)
....+.-++...|++..|.+.-++..+ .|-.+ -......+.+.|...|+.+.|+.-|++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122333355666777667666665433 33222 22344566778888888888877776543
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.03 E-value=9.3 Score=37.14 Aligned_cols=145 Identities=10% Similarity=0.131 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 008147 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (576)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li 381 (576)
...|-..+.+-.+..-++.|..+|.++.+.+ ..+++..+++++..++ .|+..-|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566677777777788899999999999888 5677888888888775 57788888988865543 3454443 5566
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 008147 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (576)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 454 (576)
.-+...++-+.|..+|+...+. +.-+ ...|..++..-..-|+...+..+-++|.+ +-|...+-....+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 7777888889999999865543 3334 56789999888999999999888888877 345554444444444
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.93 E-value=4.4 Score=33.08 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008147 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (576)
Q Consensus 94 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (576)
....++..+...+.+......++.+...+ ..+...++.++..|++.+. +...+.+.. ..+......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHH
Confidence 34567777777888999999999988877 4678889999999987643 333344432 123344555777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHcc-CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 008147 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (576)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (576)
+.+.++++.-++.++.. +...+..+... ++.+.|.+++.+. .+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--------~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--------NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--------CCHHHHHHHHHHHH
Confidence 77777777777776632 11222223333 6777777766541 23345655555443
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.83 E-value=6.6 Score=34.86 Aligned_cols=200 Identities=17% Similarity=0.070 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 008147 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (576)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~- 312 (576)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44455555566666666666666555432 2233344555555556666666666666666665433321 11222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 008147 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQ 389 (576)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 389 (576)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56667777777777777644221 1223334444444666777777777777777643 22 35667777777777777
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
++.|...+...... .|+ ...+..+...+...+..+.+...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888777663 343 334444444444666777777777777663
No 256
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.81 E-value=18 Score=39.86 Aligned_cols=114 Identities=16% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--
Q 008147 302 PDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-- 375 (576)
Q Consensus 302 p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 375 (576)
|+...+..+. ..+...+.+++|--.|+..-+. .-.+.+|..+|+|++|..+..++.. ..+..
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHH
Confidence 4544444433 4444566777776666544221 2345677888888888888887753 22322
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (576)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 435 (576)
+-..|+.-+...+++-+|-++..+.... |. -.+..+++...+++|.++....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 2256788888899999998888876542 22 2233445555666666665443
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.71 E-value=7.2 Score=35.01 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=23.1
Q ss_pred hcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 246 NAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (576)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (576)
+.|++++|...|+.+..... +....+.-.++.++.+.+++++|+..+++...
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44455555555554443321 11223333444444555555555555555443
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.66 E-value=13 Score=37.74 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH-----HHHHHHHHHHHh----cCCh
Q 008147 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-----ITIGALMKACAN----AGQV 250 (576)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~----~g~~ 250 (576)
-..-+|.-+.+. +|| .+..++...+=.|+-+.+++.+.+..+. .++.... ..|...+..++. ..+.
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 344556666554 344 3456777778889999999999987663 3443322 246666655554 4567
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008147 251 DRAREVYKMIHKYNIKGTPEVYTI-AINCCSQTGDWEFACSVYDDMTKKG--V-IPDEVFLSALIDFAGHAGKVEAAFEI 326 (576)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~--~-~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (576)
+.|.+++..+.++ -|+...|.. -.+.+...|++++|++.|++..... . ......+--+.-.+.-..++++|...
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 8999999999887 344444443 4566778899999999999755321 1 12334555666678889999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHH-HHHccCCH-------HHHHHHHHHHHh
Q 008147 327 LQEAKNQGISVGIISYSSLMG-ACSNAKNW-------QKALELYEHMKS 367 (576)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~~~~ 367 (576)
|..+.+.+ ..+..+|.-+.. ++...|+. ++|.++|.+...
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999865 445555554433 34566777 899999988764
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.63 E-value=0.47 Score=29.51 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=9.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 008147 344 SLMGACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~~~~ 367 (576)
.+...|...|++++|.++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 260
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.52 E-value=13 Score=37.59 Aligned_cols=127 Identities=9% Similarity=0.139 Sum_probs=89.6
Q ss_pred hHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHhHHHHHH
Q 008147 28 QLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMS 100 (576)
Q Consensus 28 ~~~~~~~l~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~ 100 (576)
....|..|+.- ...+.+...+..++..- |.-..+...+...-.+.|..+.+.++|++.. +-++..|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34456666632 23355666666676544 6666777777777778899999999999754 456667777665
Q ss_pred HHH-hcCChHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008147 101 VCA-SSKDSEGAFQVLRLVQEA-GL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (576)
Q Consensus 101 ~~~-~~~~~~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 156 (576)
.+. ..|+.+.....|+..... |. -.....|...|..-..++++.....+++++++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 544 457888888888887754 21 124567788888778889999999999999864
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.43 E-value=6.8 Score=36.73 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 008147 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAK--A----GQVAKAFGAYGIMRSK 191 (576)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~ 191 (576)
+...+++.|.+.|+..+..+|-+....... . ....+|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555444332222221 1 1234556666666654
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.29 E-value=1.9 Score=39.54 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhHHHH
Q 008147 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMFKCI 450 (576)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 450 (576)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..++.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444444444444444444444444421 22444445555555555555555444444432 3555555555544
Q ss_pred HHH
Q 008147 451 IGM 453 (576)
Q Consensus 451 i~~ 453 (576)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.27 E-value=7.2 Score=33.94 Aligned_cols=84 Identities=13% Similarity=0.030 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 72 KSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (576)
Q Consensus 72 ~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (576)
-+.|-..-|+--|.+. .+.-+..||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.--|++.-|.+
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~ 154 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD 154 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence 3334444444444432 23445677888777888888888888888877765332222222222 2334577777776
Q ss_pred HHHHHHHC
Q 008147 149 VFHEMVNA 156 (576)
Q Consensus 149 ~~~~~~~~ 156 (576)
-|...-+.
T Consensus 155 d~~~fYQ~ 162 (297)
T COG4785 155 DLLAFYQD 162 (297)
T ss_pred HHHHHHhc
Confidence 66665554
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.25 E-value=0.61 Score=28.98 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 008147 95 FNMLMSVCASSKDSEGAFQVLRLVQEA 121 (576)
Q Consensus 95 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 121 (576)
|..+...|...|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555544
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.14 E-value=13 Score=36.78 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008147 309 ALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (576)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 366 (576)
.+..++-+.|+.++|.+.++++.+.... ....+...|+.++...+.+.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444444556666666666655543211 122244455555556666666655555543
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.09 E-value=5.5 Score=32.26 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=9.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhh
Q 008147 203 LITACGQSGAVDRAFDVLAEMNA 225 (576)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~ 225 (576)
++.++.+.+++++|...+++.++
T Consensus 53 l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 267
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=18 Score=37.78 Aligned_cols=301 Identities=13% Similarity=0.080 Sum_probs=161.9
Q ss_pred HcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCC
Q 008147 120 EAGLKADCKLYTT-----LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKN 192 (576)
Q Consensus 120 ~~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g 192 (576)
.-|++.+..-|.. +|+-+...+.+..|+++-..+...-.. ...+|.....-+.+..+. +++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4567777666654 567777888899998887776522111 156666666666665322 23333333322221
Q ss_pred CCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------
Q 008147 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (576)
Q Consensus 193 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 264 (576)
. ....+|..+.+--...|+.+-|..+++.=......+ -.+..-+...+.-+...|+.+....++-.+.+.-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 345678788877778899999998886532211111 0122234455666777888887777766554431
Q ss_pred -----CCCCHHHHHHHHH--------HHHhcCCHHHHHHHHHHH--H----hCCCCCCHHHHHHHHHHHHhcCCHHHH--
Q 008147 265 -----IKGTPEVYTIAIN--------CCSQTGDWEFACSVYDDM--T----KKGVIPDEVFLSALIDFAGHAGKVEAA-- 323 (576)
Q Consensus 265 -----~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~~m--~----~~~~~p~~~~~~~li~~~~~~g~~~~a-- 323 (576)
.+.....|.-++. .+.+.++-..+...|..- . ..+..|+ .......+.+.....-.
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 1111122222221 111112222222211110 0 0122222 22333344443331111
Q ss_pred --------HHHHHHHHH-CCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008147 324 --------FEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (576)
Q Consensus 324 --------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (576)
..+.+.+.. .+......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 111122211 1222223344555556667788888888777665 578888888888888888888766
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (576)
Q Consensus 395 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 435 (576)
++-+.+. .+.-|.-...+|.+.|+.++|.+++-+.
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 6655432 2455777788888888888888877654
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.83 E-value=24 Score=39.02 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008147 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (576)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (576)
.|.+....+.....+++|.-.|+..-+ ....+.+|..+|++.+|..+..++....-+ -..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence 455555556666777777766665432 234456777788888888887766432111 1122356677777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008147 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (576)
Q Consensus 351 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (576)
..+++-+|-++..+..+ .| .-.+..|++...+++|+.+....
T Consensus 1011 e~~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 77887777777766653 12 22344455566677776665543
No 269
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.55 E-value=15 Score=35.99 Aligned_cols=383 Identities=12% Similarity=0.076 Sum_probs=197.7
Q ss_pred HhhhHHHHHHHHHhhhCCC---CCH------HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHh
Q 008147 71 CKSQKAIKEAFRFFKLVPN---PTL------STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT--CAK 139 (576)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~ 139 (576)
..+++++.+|.++|.++-+ .++ ..-+.++++|... +.+.....+....+.. | ...|-.|..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 4677889999999987642 222 2334566776653 5566555555555432 2 2233333333 457
Q ss_pred cCCHHHHHHHHHHHHHC--CCCC------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCcCHhHHH
Q 008147 140 SGKVDAMFEVFHEMVNA--GIEP------------NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN----VKPDRVVFN 201 (576)
Q Consensus 140 ~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~ 201 (576)
.+.+++|.+.+...... +..+ |-..=+..+..+...|++.++..+++++...= ..-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 88999999988877654 2222 22233566778889999999999999887543 346788888
Q ss_pred HHHHHHHccCC---------------HHHHHHHHHHHhhCCC----CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 008147 202 ALITACGQSGA---------------VDRAFDVLAEMNAEVH----PVDPDHITIGALMKACANA--GQVDRAREVYKMI 260 (576)
Q Consensus 202 ~ll~~~~~~g~---------------~~~a~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~ 260 (576)
.++-.++++=- ++.+.-...++..... .+.|......+++....-. .+..--.+++..-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 86655554311 1111111222211110 1223333333333322211 1111122222222
Q ss_pred HhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 261 HKYNIKGTP-EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (576)
Q Consensus 261 ~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (576)
...-+.|+- -+...++..+.+ +.+++..+-+.+....+.+ =..++..++....+.++...|.+.+.-+..-.
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld- 328 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD- 328 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-
Confidence 233334432 223334444443 4555555544443322111 23467888888889999999998888776543
Q ss_pred CcCHHHHH-------HHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHcCCC-hhHHHHHHHHH
Q 008147 336 SVGIISYS-------SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALI---TALCDGDQ-LPKTMEVLSDM 400 (576)
Q Consensus 336 ~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m 400 (576)
|+...-. .+-+..+. .-+...=+.+|+.....++.. ......|+ .-+-+.|. -++|+++++..
T Consensus 329 -p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 329 -PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred -CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3222111 12222221 112333445566655443211 11222233 34556666 78899999998
Q ss_pred HhCCCCCC-HHHHHHH----HHHHHh---cCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHH---HHh-cHHHHHhh
Q 008147 401 KSLGLCPN-TITYSIL----LVACER---KDDVEVGLMLLSQAKEDGVIPNL----VMFKCIIGM---CSR-RYEKARTL 464 (576)
Q Consensus 401 ~~~g~~p~-~~~~~~l----l~a~~~---~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~---~~~-~~~~a~~~ 464 (576)
.. +.|. ...-+.+ =.+|.+ ...+.+...+-.-+.+.|+.|-. ...|.|-++ |+. .|.+|.-.
T Consensus 407 l~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 87 4443 3322222 234433 23444555555555667887654 456777765 333 56666543
No 270
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.40 E-value=4.7 Score=30.06 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=61.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 008147 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (576)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 117 (576)
....+||-.+-+.+...+. ....+...-...+.++|++++|..+.+..+.||...|-++-.. +.|-.+.+..-+..
T Consensus 18 ~HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred chHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 4567889999888887662 2333333334456678999999999999999999999887654 45666666666666
Q ss_pred HHHcCCCCCHHHH
Q 008147 118 VQEAGLKADCKLY 130 (576)
Q Consensus 118 m~~~~~~~~~~~~ 130 (576)
|...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 76666 4444433
No 271
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=91.20 E-value=21 Score=37.28 Aligned_cols=148 Identities=9% Similarity=0.018 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008147 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (576)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 368 (576)
....+.+..+-...+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+..+.++|+......+-+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444444443344666677788888888888888888776654421 1334555666666777766555554444432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 008147 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA--CERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (576)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 446 (576)
....+......++....... + +.+.-.-|..+-.- ..+.|+..+|.+.+-.+.+.++.|....
T Consensus 468 ~~~~~~~~~~~ll~~i~~~~-----------~----~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 468 YCNNGEPLDDDLLDNIGSPM-----------L----LSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCcccHHHHHHhcchh-----------h----hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHH
Confidence 22222222222222211111 0 11111111111111 1334777778777777777777777766
Q ss_pred HHHHHHH
Q 008147 447 FKCIIGM 453 (576)
Q Consensus 447 ~~~li~~ 453 (576)
..-|.++
T Consensus 533 ~~LL~d~ 539 (566)
T PF07575_consen 533 PLLLCDA 539 (566)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 6666554
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.09 E-value=6.4 Score=33.70 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (576)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (576)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544322221 2233444555555555555555544443
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.60 E-value=8.4 Score=31.93 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=29.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (576)
+.++.+++..+++.+.-.. |....+...-+.++...|++.+|.++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5566666666666665544 4444444444455555666666666666554
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.58 E-value=7.1 Score=41.05 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=107.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 008147 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL----MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (576)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (576)
....-+..+.+...++.|..+-+.- +..++ +...+ .+-+.+.|++++|...+-+....- .| ..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~ 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ-----HLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SE 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HH
Confidence 3455666777777777777776542 22333 33333 344456788888877775544321 21 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 008147 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (576)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (576)
+|.-|....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 456666777777777788888888775 55666778888888888887776665443 2211 1113445666777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008147 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (576)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (576)
.++|..+-.+.. .+......+ +-..+++++|++.++.|
T Consensus 479 l~~a~~LA~k~~-----~he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFK-----KHEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhc-----cCHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 777776655443 233333333 34567788888888765
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.48 E-value=5.1 Score=34.28 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKN 332 (576)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (576)
.+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|......+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566677777777777777777776665443322 2345556666666676666666655543
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.40 E-value=15 Score=34.21 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=29.6
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008147 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (576)
Q Consensus 199 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (576)
++..++.++...+..+ +|..+++.+..+ .+-+| .++..-+..+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555554433 344455444332 12122 23333444444556666666666666554
No 277
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.00 E-value=14 Score=33.23 Aligned_cols=55 Identities=4% Similarity=-0.152 Sum_probs=31.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAK 436 (576)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (576)
..-|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|..++|.+.-+-+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34566667777777777776664 22222 234444566666666666665554443
No 278
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.84 E-value=13 Score=32.48 Aligned_cols=182 Identities=16% Similarity=0.080 Sum_probs=106.7
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008147 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (576)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (576)
..|-+.-|..-|....... +.-+.+||-+.-.+...|+++.|.+.|+...+.+..-+....|.-|. +--.|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 3344445555555555443 34467899998889999999999999999988765544444443333 234688888887
Q ss_pred HHHHHHHCCCC-cCHHHHHHHHHHHHccCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 008147 326 ILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (576)
Q Consensus 326 ~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (576)
-+...-+.+.. |=...|--+. ...-++.+|..-+ ++.. ..|..-|...|-.|.-..-.+ ..+++++...
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISE--ETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccH--HHHHHHHHhh
Confidence 77766665422 2122222222 2333556665443 3333 345556665554443222222 2234443331
Q ss_pred CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008147 404 GLCPN-------TITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (576)
Q Consensus 404 g~~p~-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (576)
-..+ ..||--+..-+...|+.++|..+|+-.+...
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1211 3467777788889999999999999887643
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=15 Score=32.68 Aligned_cols=207 Identities=14% Similarity=0.079 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008147 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (576)
Q Consensus 94 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (576)
.|.....+|-...++++|...+.+..+- ...+...|. ....++.|.-+.+++.+. +--+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455566666777776666555421 122222211 112234444444444432 112234455556677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCCCCCCHHHHHHHHHHHHhcCCh
Q 008147 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE---VHPVDPDHITIGALMKACANAGQV 250 (576)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~ 250 (576)
.+|..+.|-..+++.-+. ...-+.++|++++.+.... +.....-...+..+-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777766666655554321 1122233333333332211 000001111233333445555555
Q ss_pred HHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 008147 251 DRAREVYKMIHKY----NIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEA 322 (576)
Q Consensus 251 ~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 322 (576)
++|-..+.+-... .--++ -..|...|-.+....++..|.+.++.--+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5554444322111 00111 1223444445555566666766666633321 122445566666655 3455555
Q ss_pred HHHHH
Q 008147 323 AFEIL 327 (576)
Q Consensus 323 a~~~~ 327 (576)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 54443
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.19 E-value=12 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=14.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008147 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (576)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (576)
+.+.+.++++++..+..+++.+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344445555555555555555555443
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.93 E-value=16 Score=32.29 Aligned_cols=201 Identities=17% Similarity=0.128 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008147 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (576)
Q Consensus 198 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 277 (576)
..+......+...+.+..+...+...... .........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34444444555555555555555444321 0012233344444444555555555665555555433222 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 008147 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (576)
Q Consensus 278 -~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (576)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666777777777766644211 112233333333355667777777777777665322135666777777777778
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 008147 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (576)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (576)
.+.|...+....... |+ ...+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888887777642 32 34444444455566678888888777766
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.87 E-value=11 Score=32.40 Aligned_cols=117 Identities=9% Similarity=0.055 Sum_probs=69.9
Q ss_pred cCChhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHHhHHH-----HHHHHHhcCChHH
Q 008147 38 QGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM-----LMSVCASSKDSEG 110 (576)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~-----li~~~~~~~~~~~ 110 (576)
.+.+ +.....+.+...+ ...........+.......+++++|...++... .+.-..+.. |.+...+.|.+++
T Consensus 66 ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~ 144 (207)
T COG2976 66 AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADA 144 (207)
T ss_pred cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4444 5566666666655 212223333344456667778888888777643 332233333 3355677788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008147 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (576)
Q Consensus 111 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 157 (576)
|+.+++.....+.. ......-.+.+...|+-++|+.-|....+.+
T Consensus 145 AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 145 ALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88888766544321 2233444567778888888888888877764
No 283
>PRK09687 putative lyase; Provisional
Probab=88.85 E-value=20 Score=33.40 Aligned_cols=236 Identities=14% Similarity=0.060 Sum_probs=118.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCH
Q 008147 87 VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNV 162 (576)
Q Consensus 87 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~~~~ 162 (576)
+.++|.......+..+...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 3456666666666666666543 33333333332 33555555666667777653 4566666655333 4566
Q ss_pred hhHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 008147 163 HTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (576)
Q Consensus 163 ~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (576)
.+....+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+-.+.. .+|..+-
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR 176 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVR 176 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHH
Confidence 6666666666554321 223333333332 2244444455666666665 345555555543 2333343
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008147 238 GALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (576)
Q Consensus 238 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (576)
...+.++.+.+ +...+...+..+.. .++..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 44444444432 12344444444442 3345566666666766666 34555555544442 2 12345566666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008147 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (576)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (576)
.|.. +|...+..+.+.. +|..+-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 6664 4666666655532 2444444444433
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.68 E-value=1.2 Score=26.23 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (576)
Q Consensus 411 ~~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (576)
+|..|...|.+.|++++|+.++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677778888888888888887754
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.63 E-value=5.7 Score=29.44 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHhHHHHHHH
Q 008147 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGM 453 (576)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~ 453 (576)
+.-++.+-++.+....+.|++....+.++||.+.+++.-|.++++-.+ +.|. +...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 344566667777777899999999999999999999999999999876 4332 45577777754
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.38 E-value=1.2 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 008147 165 YGALIDGCAKAGQVAKAFGAYGI 187 (576)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~ 187 (576)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555666666666665555
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.15 E-value=1.1 Score=25.66 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=7.2
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 008147 416 LVACERKDDVEVGLMLLSQA 435 (576)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~ 435 (576)
..++...|++++|+..++++
T Consensus 8 g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHH
Confidence 33333333333333333333
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=39 Score=35.61 Aligned_cols=103 Identities=8% Similarity=0.053 Sum_probs=68.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChH
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 109 (576)
++=|++.+.+++|++.-+.....- +. ...+...++..+...|++++|-...-.|...+..-|.--+..++..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 556789999999999887665433 21 23334444555566688999988888888888888888887777776655
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 139 (576)
....+ +.......+...|..++..+..
T Consensus 441 ~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 43332 2222222456677777776665
No 289
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.73 E-value=23 Score=32.66 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHccCCHHHHH
Q 008147 284 DWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-AG-KVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKAL 359 (576)
Q Consensus 284 ~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (576)
...+|+++|+.... ..+.-|..+...++..... .+ ....-.++.+.+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653222 2234466666666665544 11 222223333333322 23556667777778888888888888
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH-----HHhCCCCCCHHHHHHHH
Q 008147 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSILL 416 (576)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~ll 416 (576)
++++..... +...|...|..+|......|+..-...+..+ +.+.|+..+...-..+-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHH
Confidence 877776643 4455777788888888888876655555543 23344555544444433
No 290
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.68 E-value=5.9 Score=39.91 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=46.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008147 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (576)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (576)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 445555555554332 1344455555555556666555555554432 3344444555555544444
Q ss_pred HHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 008147 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (576)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 222 (576)
+-....+.|. .|..+-++...|+++++.+++..
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444443331 12222334445555555555543
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.57 E-value=15 Score=30.48 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=8.6
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008147 138 AKSGKVDAMFEVFHEMVN 155 (576)
Q Consensus 138 ~~~g~~~~a~~~~~~~~~ 155 (576)
...|++.+|..+|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344455555555555443
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.54 E-value=24 Score=32.85 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=88.6
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCC-----
Q 008147 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPN----- 161 (576)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~----- 161 (576)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+.+..+++.|...+++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777777777665432 12221 22333333333333777776666554332 11222
Q ss_pred HhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 008147 162 VHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (576)
Q Consensus 162 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
..+...++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+.+.+|... +.-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~---~~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS---VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh---cccccchHH
Confidence 245677788888877654 5666666665542 222445555667777789999999999999875 221223444
Q ss_pred HHHHHH---HhcCChHHHHHHHHHHHhcCCCCCH
Q 008147 239 ALMKAC---ANAGQVDRAREVYKMIHKYNIKGTP 269 (576)
Q Consensus 239 ~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (576)
..+..+ .... ...+...+..+....+.|..
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 444444 3322 34455555555444444443
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.47 E-value=1.6 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 008147 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (576)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (576)
.+|..+...|...|++++|+..|++..+ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 5788899999999999999999999887 4565
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.27 E-value=17 Score=30.63 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=65.3
Q ss_pred HHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008147 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (576)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (576)
+.++.+.+.+++|+...+..++..+.+.|.+....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 4445555566677777777777777777766655555432 23334333322221111 122223333222222
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (576)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (576)
+ + ..+..+++.+...|++-+|+++.+......- .....++.+..+.++...-..+++-..+
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~----~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDS----VPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCccc----CCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1 1345566667777777777777666432211 1124455555555555544444444443
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.26 E-value=1.1 Score=25.95 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 266 KGTPEVYTIAINCCSQTGDWEFAC 289 (576)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~ 289 (576)
+.++.+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666665553
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.97 E-value=22 Score=31.74 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~ 154 (576)
|..-..+|....++++|..-+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334445555556666655444443
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.79 E-value=12 Score=34.55 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008147 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (576)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 379 (576)
...+...++..-....+++.++..+-+++... ..++.. -.+.++.+.+ -+.++++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 33444444444444455566665555554331 111111 1112222222 245566666666566666666666666
Q ss_pred HHHHHHcCCChhHHHHHHHHHH
Q 008147 380 LITALCDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~ 401 (576)
+|+.+.+.+++.+|..+.-.|.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHH
Confidence 6666666666666666655544
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.85 E-value=0.59 Score=27.12 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=13.6
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHH
Q 008147 89 NPTLSTFNMLMSVCASSKDSEGAF 112 (576)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~a~ 112 (576)
+.|...|+.+...+...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345555666666666666665553
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.58 E-value=13 Score=30.30 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=40.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC-HHhHHHHHHHHH
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCA 103 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 103 (576)
..++++++-.+++.|.-.. |....+...-+.++...|++++|.++|..+.... ...|..-+.++|
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 5777888888887776654 5555555555556677777888888887776432 224444443333
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.49 E-value=21 Score=30.03 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=64.8
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHHhcCC
Q 008147 244 CANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV-FLSALID--FAGHAGK 319 (576)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~--~~~~~g~ 319 (576)
.++.+..++|+.-|..+.+.|...-+.. .-.+.....+.|+-..|...|+++-.....|-.. -...|-. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3455666667777766666654322221 1122333456667777777777766554444322 1111111 2345566
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008147 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 367 (576)
++....-.+.+-..+-+.....-..|.-+-.+.|++..|.+.|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666665555554444333333344555555667777777777776654
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.88 E-value=2.1 Score=24.35 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=5.5
Q ss_pred HHcCCChhHHHHHHHH
Q 008147 384 LCDGDQLPKTMEVLSD 399 (576)
Q Consensus 384 ~~~~g~~~~A~~~~~~ 399 (576)
+.+.|++++|++.|++
T Consensus 11 ~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 3333333333333333
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.58 E-value=6.2 Score=36.75 Aligned_cols=85 Identities=12% Similarity=-0.028 Sum_probs=45.2
Q ss_pred HhhhHHHHHHHHHhhhCC--CC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008147 71 CKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (576)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 147 (576)
+.++|.+++|+..|.... .| |++++..-..+|.+..++..|..=....+..+ ..-...|..-+.+-...|...+|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566666666665432 23 55666666666666666655555444443322 111233444444444556666777
Q ss_pred HHHHHHHHC
Q 008147 148 EVFHEMVNA 156 (576)
Q Consensus 148 ~~~~~~~~~ 156 (576)
+-++..+..
T Consensus 186 kD~E~vL~L 194 (536)
T KOG4648|consen 186 KDCETVLAL 194 (536)
T ss_pred HhHHHHHhh
Confidence 666666654
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.32 E-value=15 Score=27.60 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 008147 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (576)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 454 (576)
+..+-++.+....+.|++....+.+.||.+.+++..|.++++-++.. ..+....|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 45566667777789999999999999999999999999999988643 223333788887653
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.97 E-value=13 Score=32.19 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH
Q 008147 267 GTPEVYTIAINCCSQTGDWEFA 288 (576)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a 288 (576)
+|+..+.+|++.+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444555555555555554444
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.23 E-value=3.3 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 410 ITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 410 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
..|..+...+...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888999999999999999999873
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.74 E-value=22 Score=32.97 Aligned_cols=105 Identities=11% Similarity=0.101 Sum_probs=52.4
Q ss_pred CCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 008147 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (576)
Q Consensus 192 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (576)
|.+.+..+...++..-....+++.+...+-.+.....- ..|+. +-.+.++.+ -.-++++++.++..-.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 33444444444444444445566666555555432100 01111 111222222 2234556666666666666666777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777776666665555443
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.51 E-value=12 Score=27.78 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 109 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 154 (576)
-++.+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+.++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555666666667777777777777777777777777777665
No 308
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.47 E-value=46 Score=31.67 Aligned_cols=166 Identities=14% Similarity=0.040 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHH
Q 008147 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIIS 341 (576)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~ 341 (576)
.|..+..++-+.-++.+++.+-..-.. .|..| --....++..+....+.++++++.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344445555555555555555444332 12222 01222334445555566777777777665421 1123346
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHcCCChhHHHHHHHHHH----hCCCCCC
Q 008147 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMN-----ALITALCDGDQLPKTMEVLSDMK----SLGLCPN 408 (576)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 408 (576)
+..|...|.+..|+++|.-+..+..+ .++..-..-|. .|.-++...|+..+|.+.-++.. ..|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77778888888888887766555442 22221112222 23345667777777777766643 2342222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 409 -TITYSILLVACERKDDVEVGLMLLSQAK 436 (576)
Q Consensus 409 -~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (576)
......+.+.|...|+.+.|..-++.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334556677888888888887777654
No 309
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.40 E-value=62 Score=33.08 Aligned_cols=365 Identities=10% Similarity=0.023 Sum_probs=181.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHH-HHHHHHhhhHHHHHHHHHhhhCC------CCCHHhHHHHHHHHHhcCChH
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHA-RFFNVCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~ 109 (576)
+.|..+.+..+|++.++.- |.+..+.. .+..++...|+.+..++.|+... -.....|...|..-..++++.
T Consensus 91 klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 6899999999999988743 44443333 33334445667777778887643 234567888998888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---c------CCHHHHHHHHHHHHHC---C-CCCCHhhHHHHHHHHHh-c
Q 008147 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK---S------GKVDAMFEVFHEMVNA---G-IEPNVHTYGALIDGCAK-A 175 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~------g~~~~a~~~~~~~~~~---~-~~~~~~~~~~li~~~~~-~ 175 (576)
....++++.++.- ...|+....-|.+ . ...+++.++-...... + ..+....+..-+.--.. .
T Consensus 169 ~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 9999999998642 2222222222221 1 1223332222222110 0 00011111111111000 1
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CC----CCCCHHHHHHHHHHHHhcCCh
Q 008147 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HP----VDPDHITIGALMKACANAGQV 250 (576)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~ll~~~~~~g~~ 250 (576)
+..+++.....+... .--..+-......+..-.|+.-.... .. ..++..+|..-+.--.+.|+.
T Consensus 245 ~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 245 KSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred chhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 111122111111110 00111222222333333343332210 01 123445666666666777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (576)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (576)
+...-+|+...-.- ..=...|-..+.-....|+.+-|..++....+-.++-.+.+-..-....-..|+++.|..+++.+
T Consensus 314 ~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 314 SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 77777776654332 11223454455555555777777776666555433322222211122233456777777777777
Q ss_pred HHCCCCcCH-HHHHHHHHHHHccCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHHH-----HcCCChhHHHHHHHHHH
Q 008147 331 KNQGISVGI-ISYSSLMGACSNAKNWQKAL---ELYEHMKSIKLKPTVSTMNALITAL-----CDGDQLPKTMEVLSDMK 401 (576)
Q Consensus 331 ~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~ 401 (576)
...- |+. .+-..-+....+.|..+.+. .++....+. +-+....+.+.--+ .-.++.+.|..++.++.
T Consensus 393 ~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 393 ESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred HhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 6653 332 22223334455666666666 333333322 12222233332222 23567788888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCC
Q 008147 402 SLGLCPNTITYSILLVACERKDD 424 (576)
Q Consensus 402 ~~g~~p~~~~~~~ll~a~~~~g~ 424 (576)
+. ++++...|..++.-+...+.
T Consensus 469 ~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 469 DI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hc-CCccHHHHHHHHHHHHhCCc
Confidence 75 56677777877777766653
No 310
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.25 E-value=73 Score=33.86 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (576)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (576)
-+..-...++++.+...+..|....-. ...-.--+..++...|+.++|..+|+.+
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444566666666666665442211 2233333444545566666666666665
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=23 Score=35.99 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 008147 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (576)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 222 (576)
+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHh
Confidence 4455555554443332 334455555555555555555555544
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.59 E-value=28 Score=28.52 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=25.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008147 105 SKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (576)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 156 (576)
.++++++..+++.|.-. .|+ ..++.. ..+...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666655543 222 222222 2345566666666666666654
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.58 E-value=72 Score=33.30 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHH----H-HHhcCCHHHHHHHHHHHHh-------CCCCcCHhHHHHHHHHHHcc
Q 008147 143 VDAMFEVFHEMVNAGIEPNVHTYGALID----G-CAKAGQVAKAFGAYGIMRS-------KNVKPDRVVFNALITACGQS 210 (576)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~ 210 (576)
...+.+.++...+.| +......+.. + +....+.+.|+.+|+...+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777765 2222222222 2 4456788888888888766 44 233444555555553
Q ss_pred C-----CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 008147 211 G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---- 280 (576)
Q Consensus 211 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---- 280 (576)
. +.+.|+.++......+ .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 2 5667888877766542 3443333222222222 23567888888888777742 22222222221
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008147 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (576)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (576)
-..+...|..++++.-+.|. |-...-...+..+.. ++.+.+...+..+...+.
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 22466778888888877773 232222223333333 666666666666666553
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.42 E-value=3.6 Score=24.75 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHH
Q 008147 376 TMNALITALCDGDQLPKTMEVLSD 399 (576)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~ 399 (576)
+++.|...|...|++++|..++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHH
Confidence 344444444444444444444444
No 315
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.89 E-value=36 Score=29.35 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=41.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008147 242 KACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (576)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (576)
..+...+++++|+.-++.........+ ..+--.|.......|.+++|+++++.....+.. ......--+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 344555555555555554443211100 111122334445555666666655555444321 1222233334555555
Q ss_pred HHHHHHHHHHHHHCC
Q 008147 320 VEAAFEILQEAKNQG 334 (576)
Q Consensus 320 ~~~a~~~~~~~~~~~ 334 (576)
-++|+.-|......+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 555555555555543
No 316
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.88 E-value=40 Score=29.96 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHHHHHH
Q 008147 316 HAGKVEAAFEILQEAKN 332 (576)
Q Consensus 316 ~~g~~~~a~~~~~~~~~ 332 (576)
..+++.+|+.+|+++..
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.47 E-value=78 Score=33.02 Aligned_cols=184 Identities=15% Similarity=0.090 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhcC-
Q 008147 108 SEGAFQVLRLVQEAGLKADCKLYTTLI--TT-CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (576)
Q Consensus 108 ~~~a~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g- 176 (576)
...|...++...+.|. ........++ .+ +....|.+.|...|....+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4678888888887762 2222222222 22 4466789999999999876 44 3345666777777643
Q ss_pred ----CHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH--hcCC
Q 008147 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NAGQ 249 (576)
Q Consensus 177 ----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~ 249 (576)
+.+.|+.+|.+.-+.| .|+....-..+..... ..+...|.++|......+ . ++..-+..++.... ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--H-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--C-hHHHHHHHHHHHhCCCcCCC
Confidence 6788999999998887 4555554444433333 356789999999987653 2 22222222211111 2346
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008147 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (576)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (576)
...|..++.+.-+.+ .|....-...+..+.. +.++.+.-.+..+.+.|..
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 889999999999888 4332222233344444 7888887777777776643
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.43 E-value=10 Score=28.46 Aligned_cols=46 Identities=15% Similarity=0.447 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (576)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (576)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444455555556666666666666666666666666666665554
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.10 E-value=32 Score=29.25 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008147 391 PKTMEVLSDMKSLGLCPNT-ITYSILLVACERKD----D-------VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (576)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g----~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 455 (576)
++|+.-|++... +.|+. .++..+..++...+ + +++|...|+++.. .+|+..+|+.-+.+..
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 344444444444 56653 55655655554432 2 3444455555544 6788888888777743
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.30 E-value=32 Score=29.23 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCC-----------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008147 356 QKALELYEHMKSIKLKPTV-STMNALITALCDGD-----------QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (576)
Q Consensus 356 ~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 423 (576)
++|..-|++.+.. .|+. .++..+..+|...+ .+++|.+.|++... ..|+..+|..-+..+.
T Consensus 52 edAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 52 EDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH---
Confidence 3344444444442 3443 45555555554322 25666677777666 5899999999887773
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 008147 424 DVEVGLMLLSQAKEDGVIPN 443 (576)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~~~ 443 (576)
+|-+++.++.+.+..+.
T Consensus 125 ---kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 125 ---KAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp ---THHHHHHHHHHSSS---
T ss_pred ---hhHHHHHHHHHHHhhhh
Confidence 47788888887765443
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.03 E-value=5.7 Score=23.80 Aligned_cols=29 Identities=28% Similarity=0.209 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 409 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
..+++.+...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999998865
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.48 E-value=0.67 Score=38.13 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=48.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008147 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (576)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 424 (576)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34555556666666666666665444455666677777777776666666666511 11223445566666666
Q ss_pred HHHHHHHHHHH
Q 008147 425 VEVGLMLLSQA 435 (576)
Q Consensus 425 ~~~a~~~~~~~ 435 (576)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.15 E-value=20 Score=31.44 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=6.7
Q ss_pred HHHHHHHccCCHHHHH
Q 008147 202 ALITACGQSGAVDRAF 217 (576)
Q Consensus 202 ~ll~~~~~~g~~~~a~ 217 (576)
.++..++-.|++++|.
T Consensus 40 flfqLlcvaGdw~kAl 55 (273)
T COG4455 40 FLFQLLCVAGDWEKAL 55 (273)
T ss_pred HHHHHHhhcchHHHHH
Confidence 3344444444444443
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.81 E-value=1.1 Score=36.73 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (576)
Q Consensus 99 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (576)
+..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555554444445555566666666555555554444
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.02 E-value=73 Score=30.74 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (576)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (576)
..+|..+...+.+.|+++.|...+.++...+..+ ++...-.-+...-..|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777888888888888888888877643211 222233334445566777888888877766
No 326
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.98 E-value=30 Score=26.34 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=52.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 116 (576)
-....+||-.+.+.+...+. ....+.......+.++|++.+|+..=...+.||...|-++-. .+.|-.+++..-+.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45678999999999988873 333333333445667899999955444556788888887754 46677777777777
Q ss_pred HHHHcC
Q 008147 117 LVQEAG 122 (576)
Q Consensus 117 ~m~~~~ 122 (576)
++-..|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 776655
No 327
>PRK09687 putative lyase; Provisional
Probab=76.93 E-value=64 Score=30.07 Aligned_cols=136 Identities=11% Similarity=-0.047 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008147 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLM 346 (576)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (576)
+..+-...+.++.+.++ .++...+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44455555555555554 3455555554442 23333344444444432 12344444444442 23445555556
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008147 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (576)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 419 (576)
.++.+.|+. .|...+-...+. ++ ..-..+.++...|.. +|+..+..+... .||...-...+.+|
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 666666653 344444333332 22 123455555555553 455555555542 34555544444444
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.85 E-value=23 Score=31.06 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHhHHHHHHHH
Q 008147 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITA 206 (576)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~ 206 (576)
..++.+.+.+++++++...+.-++.. +.|..+...++..+|-.|++++|...++-.-.. ...+-...|..+|.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455566666777776666655553 335556666777777777777777666554432 112233455555543
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.59 E-value=30 Score=26.03 Aligned_cols=58 Identities=12% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHH
Q 008147 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (576)
Q Consensus 136 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (576)
.+...|++++|..+.+.+. .||...|-+|-. .+.|..+.+..-+.+|..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445666666666655552 556666655533 34555555555555555554 3333333
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.45 E-value=4.3 Score=23.11 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=6.9
Q ss_pred HHHHcCCChhHHHHHHHH
Q 008147 382 TALCDGDQLPKTMEVLSD 399 (576)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~ 399 (576)
..|...|++++|...|++
T Consensus 9 ~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 9 KIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 333333333333333333
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.23 E-value=65 Score=29.76 Aligned_cols=58 Identities=10% Similarity=-0.042 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (576)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (576)
++.....|..+|.+.+|..+.++.+..+. .+...+-.++..+...|+--.+.+-+..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445566667777777777666666543 25566666666676667655555555544
No 332
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.48 E-value=1.2e+02 Score=32.28 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHcc
Q 008147 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (576)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 210 (576)
.+|--|.++|++++|.++..+.... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4566677888888888877554432 234445666667777664
No 333
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=74.69 E-value=1.5 Score=28.58 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=23.4
Q ss_pred chhhhhHHHHHHHcCCCcccccccCC
Q 008147 551 DPRAFSLLEVCRELKLEYFTSLSSFL 576 (576)
Q Consensus 551 ~~~a~~~~~~~~~~g~~p~~~~~~~~ 576 (576)
+++.+++|+.|-.+.++|.+..|||.
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~ 33 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFS 33 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeee
Confidence 35789999999999999999999984
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.05 E-value=87 Score=30.19 Aligned_cols=67 Identities=18% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008147 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (576)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (576)
....++..+...+.+.|.++.|...+..+...+... .+.+...-...+-..|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445578888999999999999999999888754221 3455555667778889999999999888773
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.05 E-value=61 Score=32.24 Aligned_cols=105 Identities=14% Similarity=0.042 Sum_probs=61.3
Q ss_pred HHccCCHHHHHHHHHHHHh---CCCC--C---CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-------CCCCCC-----
Q 008147 349 CSNAKNWQKALELYEHMKS---IKLK--P---TVSTMNALITALCDGDQLPKTMEVLSDMKS-------LGLCPN----- 408 (576)
Q Consensus 349 ~~~~g~~~~A~~~~~~~~~---~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~----- 408 (576)
+--.|++.+|.+++...-- .|.. | .-..||.|...+.+.|.+.-+..+|.+..+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3446777777776654321 1211 1 122356666666666776666666665542 355542
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008147 409 ------TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (576)
Q Consensus 409 ------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 455 (576)
..+|+.= -.+...|++-.|.+.|.+..+. +..++..|-.|..+|.
T Consensus 330 s~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1234433 3567788888888888777654 5567777777777664
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.55 E-value=72 Score=29.01 Aligned_cols=203 Identities=9% Similarity=0.113 Sum_probs=103.4
Q ss_pred CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC-
Q 008147 229 PVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKK---GV- 300 (576)
Q Consensus 229 ~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~- 300 (576)
+..||+..=|..-.+ -.+...+++|+.-|++..+..-.... .+...+|..+.+.|++++....+.+|+.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665443322211 12344788888888888765422222 23455677788888888888888877531 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----
Q 008147 301 -IPDEVFLSALIDFAGHAGKVEAAFEILQEAKN----Q-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL---- 370 (576)
Q Consensus 301 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---- 370 (576)
.-+..+.+.+++.-....+.+.....++.-.+ . +-+.=-.|-+-|...|...+.+.+..+++.++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 11344566666665555555555444443221 1 1111112334455566666666666666666553210
Q ss_pred CCC-------HHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 008147 371 KPT-------VSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVAC-----ERKDDVEVGLMLL 432 (576)
Q Consensus 371 ~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~-----~~~g~~~~a~~~~ 432 (576)
..| ...|..=|..|....+-.+-..++++...- ..-|.+.. ..+++-| .+.|.+++|..-|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHH
Confidence 111 233555556666666666666666654321 12233333 2333333 3456666655433
No 337
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.87 E-value=51 Score=26.98 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHhHHH
Q 008147 376 TMNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKC 449 (576)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~a~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~ 449 (576)
..|+++.-....+.+.-.+.+++.+.... -.-+..+|.+++.+.+...- ---+..+|..+.+.+.+++..-|.+
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 35666666666666666666666653210 02244567888888866655 3446677788877778888888888
Q ss_pred HHHHHHh
Q 008147 450 IIGMCSR 456 (576)
Q Consensus 450 li~~~~~ 456 (576)
+|.++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 8887654
No 338
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.98 E-value=1.2e+02 Score=30.53 Aligned_cols=178 Identities=10% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008147 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (576)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (576)
....+++..+.++-.+.-+..+..+|...|- +...|..++.+|... ..+.-..+++++.+..+. |.+.-..|..-|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 3445555555555555555556666655442 445555566666555 345555555555554322 223333333333
Q ss_pred HccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 008147 350 SNAKNWQKALELYEHMKSIKLKP-----TVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKD 423 (576)
Q Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~a~~~~g 423 (576)
.+ ++.+++...|.++...-++. -...|.-|+..- ..+.+.-+.+..+... .|..--.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 33 55555555555554321110 112344333311 2334444444444433 233333444555556666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008147 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (576)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 455 (576)
++.+|+++++.+.+.. ..|...-.-+|.-+.
T Consensus 220 N~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 220 NWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred CHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 6777777666665543 223333444444443
No 339
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.70 E-value=34 Score=27.00 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008147 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (576)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 453 (576)
+..+-++.+...++.|++......++||.+.+++..|.++|+-++.. +.+...+|..+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 34455666677789999999999999999999999999999887643 34444467766654
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.63 E-value=6.8 Score=20.87 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=7.6
Q ss_pred HHHHHHccCCHHHHHHHH
Q 008147 345 LMGACSNAKNWQKALELY 362 (576)
Q Consensus 345 li~~~~~~g~~~~A~~~~ 362 (576)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333444444444444433
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.59 E-value=12 Score=23.31 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 415 LLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
+..+|...|+.+.|++++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666643
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.93 E-value=24 Score=23.01 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008147 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (576)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 453 (576)
+.-++.+.|++++|.+..+.+.+ ++|+..-...|-.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 34567788888888888888877 56776655555444
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.83 E-value=94 Score=28.79 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008147 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (576)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 366 (576)
+......|..+|.+.+|.++.+.....+ +.+...+-.|+..+...||--++.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444455666666666666666666554 4455556666666666666555555555443
No 344
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.64 E-value=24 Score=28.17 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008147 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (576)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (576)
++.++|..|...++....+.++...+..+-..|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555666555555544445555555555555555555555554
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=69.27 E-value=16 Score=20.65 Aligned_cols=28 Identities=29% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 410 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
.+|..+...+...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3577788899999999999999999876
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.87 E-value=13 Score=23.15 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 008147 133 LITTCAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~~~ 154 (576)
|..+|...|+.+.|.++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444544444444
No 347
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.51 E-value=96 Score=29.15 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHhH---HHHHHHHHHccCCHHHHHHHHHH
Q 008147 173 AKAGQVAKAFGAYGIMRSKNVKPDRVV---FNALITACGQSGAVDRAFDVLAE 222 (576)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~ 222 (576)
.+.|+..+|.+.|+.+.+. .|-... ...|+.++....-+.++..++.+
T Consensus 286 RklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666555443 221111 22355555555444444444433
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.34 E-value=1.8e+02 Score=31.55 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=45.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-------hHHHHHHH-HHhcCCHHHHHHHHHHHHhC----CCCcCHhHHHHHHH
Q 008147 138 AKSGKVDAMFEVFHEMVNAGIEPNVH-------TYGALIDG-CAKAGQVAKAFGAYGIMRSK----NVKPDRVVFNALIT 205 (576)
Q Consensus 138 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~ 205 (576)
....++++|..+..++...-..|+.. .++.|-.. ....|+++.|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777776665432122211 23333221 22356667777666655543 12233445555666
Q ss_pred HHHccCCHHHHHHHHHHHh
Q 008147 206 ACGQSGAVDRAFDVLAEMN 224 (576)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~ 224 (576)
+..-.|+++.|..+..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 506 AAHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHHhchHHHHHHHHHHHH
Confidence 6666677777776655543
No 349
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.25 E-value=81 Score=27.41 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=51.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 008147 101 VCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (576)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 176 (576)
-+...|++++|..-|...+..-.+.. ...|..-.-++.+.+.++.|++--...++.+. ........-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhh
Confidence 35567777777777777766532111 22344444556666777777766666665431 12222222334666677
Q ss_pred CHHHHHHHHHHHHhC
Q 008147 177 QVAKAFGAYGIMRSK 191 (576)
Q Consensus 177 ~~~~A~~~~~~m~~~ 191 (576)
.+++|+.-|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777777665
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.71 E-value=8.8 Score=21.42 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 008147 137 CAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 137 ~~~~g~~~~a~~~~~~~~ 154 (576)
+.+.|++++|.+.|++++
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333344444444444433
No 351
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.59 E-value=75 Score=29.19 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=9.7
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 008147 346 MGACSNAKNWQKALELYEHMK 366 (576)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~~~ 366 (576)
|-.|.|.|....+.++-..-.
T Consensus 125 ILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 334455555544444444333
No 352
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.38 E-value=36 Score=32.01 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=50.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 008147 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (576)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 179 (576)
.-|.+.|.+++|+..+....... +.+++++..-..+|.+..++..|..--...+..+ ..-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 34667778888888777666542 3367777777777777777766655544444321 111222333333333344455
Q ss_pred HHHHHHHHHHhCCCCcC
Q 008147 180 KAFGAYGIMRSKNVKPD 196 (576)
Q Consensus 180 ~A~~~~~~m~~~g~~p~ 196 (576)
+|.+-++..+.. .|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 555555555443 444
No 353
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.51 E-value=92 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=8.3
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 008147 348 ACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 348 ~~~~~g~~~~A~~~~~~~~~ 367 (576)
+|.+...+++|+.=|.++.+
T Consensus 177 ayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 34444444444444444433
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.87 E-value=1.1e+02 Score=28.27 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=45.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---
Q 008147 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK--- 174 (576)
Q Consensus 98 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 174 (576)
-|.+++..+++.+++.-.-+--+.--+..+.+...-|-.|++.+.+..+.++-....+..-..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 34666666666666554433322111112233344445566777777776666666654323333345555554443
Q ss_pred --cCCHHHHHHHH
Q 008147 175 --AGQVAKAFGAY 185 (576)
Q Consensus 175 --~g~~~~A~~~~ 185 (576)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666666555
No 355
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=63.98 E-value=66 Score=24.85 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 008147 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD--DVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (576)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~l 450 (576)
..++..|...|+.++|..-+.++... .-.......++..+...+ .-+....++..+.+.+..+....-.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf 78 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGF 78 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 44566677778888888877775321 011222333333333332 223355666677766655444433333
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.83 E-value=2e+02 Score=30.48 Aligned_cols=192 Identities=17% Similarity=0.199 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch--HHHHHHHHHHHh-hhHHHHHHHHHhhhCC----CCCHH-----
Q 008147 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD--KVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS----- 93 (576)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~----- 93 (576)
+..+..|..||+ -|++.++-+.+...+++. ..++..++.++. ...++++|...+++.. +++..
T Consensus 27 ~~~l~~Y~kLI~-----~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~ 101 (608)
T PF10345_consen 27 EEQLKQYYKLIA-----TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR 101 (608)
T ss_pred hhhHHHHHHHHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 334445555553 467888877754333322 334455555544 4456888888887642 22221
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhH
Q 008147 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTY 165 (576)
Q Consensus 94 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 165 (576)
.-..++..+.+.+... |...++..++.- ..+-...|..+ +..+...+++..|.+.++.+...- ..|...++
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 2234556666665555 888888766532 12223344444 333333478999999888876532 24445555
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHhCC---------CCcCHhHHHHHHHHH--HccCCHHHHHHHHHHH
Q 008147 166 GALIDGCA--KAGQVAKAFGAYGIMRSKN---------VKPDRVVFNALITAC--GQSGAVDRAFDVLAEM 223 (576)
Q Consensus 166 ~~li~~~~--~~g~~~~A~~~~~~m~~~g---------~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~ 223 (576)
-.++.+.. +.+..+++.+..+++.... ..|-..+|..++..+ ...|+++.+.+.++++
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555544 3455666777666663321 133455666666554 4557766666555444
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=63.00 E-value=1e+02 Score=26.82 Aligned_cols=77 Identities=9% Similarity=0.032 Sum_probs=48.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHhHHHHHHHHHHccCCHHH
Q 008147 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDR 215 (576)
Q Consensus 139 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~ 215 (576)
+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+.+|.+.+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3343 566777777766654445555555555554 56667777777666543 235667777777777777777776
Q ss_pred HH
Q 008147 216 AF 217 (576)
Q Consensus 216 a~ 217 (576)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 63
No 358
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.74 E-value=1.7e+02 Score=28.92 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008147 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (576)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 386 (576)
...|+.-|...|+..+|...++++.--- --...++-+++-+..+.|+-...+.+++..-.. ...|-+.|-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhh
Confidence 5678888889999999998887764321 224567888999999999888888888877754 45677788888876
Q ss_pred CC
Q 008147 387 GD 388 (576)
Q Consensus 387 ~g 388 (576)
-.
T Consensus 587 V~ 588 (645)
T KOG0403|consen 587 VY 588 (645)
T ss_pred hh
Confidence 43
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.58 E-value=4.1e+02 Score=32.84 Aligned_cols=62 Identities=16% Similarity=-0.007 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008147 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (576)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 368 (576)
..+|....+....+|+++.|...+-...+.+ . +..+-......-..|+...|+.++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777777778899998888777776665 2 345566677778889999999998887753
No 360
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=60.42 E-value=1.3e+02 Score=27.00 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCc
Q 008147 175 AGQVAKAFGAYGIMRSKNVKP 195 (576)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p 195 (576)
.+++++|.+++.++-+.|..|
T Consensus 251 ~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 251 KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred hccHHHHHHHHHHHHHcCCCH
Confidence 344555555555555555443
No 361
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.97 E-value=77 Score=24.30 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008147 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (576)
Q Consensus 107 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (576)
..++|..+.+.+...+- ....+--.-+..+.+.|++++|.. .-. ....||...|-+|-. .+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~~~--~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL--LPQ--CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--HHT--TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--hcc--cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34455555555554432 112222222333445555555511 111 111344444444322 34555555555555
Q ss_pred HHHhCC
Q 008147 187 IMRSKN 192 (576)
Q Consensus 187 ~m~~~g 192 (576)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554443
No 362
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.47 E-value=68 Score=23.51 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 008147 318 GKVEAAFEILQEAK 331 (576)
Q Consensus 318 g~~~~a~~~~~~~~ 331 (576)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 363
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.51 E-value=57 Score=24.14 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=23.3
Q ss_pred cccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008147 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (576)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~ 55 (576)
.|.+.......-..++..|++++|++.+-++.+.+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56666666666677777788888887777777765
No 364
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.77 E-value=1.1e+02 Score=25.20 Aligned_cols=80 Identities=5% Similarity=0.140 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCcCHhHHHHH
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVNAG-----IEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNAL 203 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (576)
.+.++.-....+++.-...+++.+.... -..+...|++++.+.++..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455555555555555555555542210 01233445555555544433 23344555555554455555555555
Q ss_pred HHHHHc
Q 008147 204 ITACGQ 209 (576)
Q Consensus 204 l~~~~~ 209 (576)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 365
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.41 E-value=1.6e+02 Score=27.31 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008147 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (576)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (576)
.++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 344445555555555555555555555444333 23334455555555555555554444333
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.25 E-value=2.2e+02 Score=28.80 Aligned_cols=181 Identities=12% Similarity=0.100 Sum_probs=123.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008147 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (576)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (576)
|-...-+++..+..+....-...+-.+|...| -+-..|..++..|... ..++-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45566778888888888888888888998875 4567788899999888 567788899988877543 4444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCc-----CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 008147 171 GCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (576)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (576)
.|-+ ++.+.+...|.+...+=++. =...|.-+...- ..+.+...++...+... .|...-.+.+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHhc
Confidence 5544 88888888888887542221 122455554321 35566777776666543 344445556666667888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008147 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (576)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (576)
...++.+|.+++..+.+.+ ..|..+-..++..+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 8999999999999888876 445555555555443
No 367
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.53 E-value=81 Score=24.32 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (576)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (576)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888887766
No 368
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.35 E-value=1.7e+02 Score=27.28 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=38.6
Q ss_pred HHHHhcCCHHHHHHHHHH-HHhCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008147 277 NCCSQTGDWEFACSVYDD-MTKKGVIPDE----VFLSALIDFAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGACS 350 (576)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~-m~~~~~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (576)
.-..+...+++.....++ |.+.+ .|+. ..|+.++++-.-+.+-+ -|.+.++. ...|.-|+.+++
T Consensus 263 ~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~ 332 (412)
T KOG2297|consen 263 EQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFC 332 (412)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHh
Confidence 333444555665555544 44444 3554 35666666543332111 12222222 446778888888
Q ss_pred ccCCHHHHH
Q 008147 351 NAKNWQKAL 359 (576)
Q Consensus 351 ~~g~~~~A~ 359 (576)
..|+.+..+
T Consensus 333 s~g~sEL~L 341 (412)
T KOG2297|consen 333 SQGQSELEL 341 (412)
T ss_pred cCChHHHHH
Confidence 888876554
No 369
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.30 E-value=1.5e+02 Score=26.57 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=49.2
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHH---HH-HHHH--hcCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHh-
Q 008147 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSI---LL-VACE--RKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSR- 456 (576)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---ll-~a~~--~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~- 456 (576)
+..+++.+|+.+|++.-...+..+..-|.. ++ .+++ ...+.-.+.+.+++-.+.... .|..-+.-|-+++..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai 244 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI 244 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 456788889999888766544433333321 11 1122 225555566666666553211 223334433333322
Q ss_pred cHHHHHhhHHhhhcccCCCccchhhhHHHH
Q 008147 457 RYEKARTLNEHVLSFNSGRPQIENKWTSLA 486 (576)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 486 (576)
.-......-+.+..|+++.+- ..|..-.
T Consensus 245 eE~d~e~fte~vkefDsisrL--D~W~tti 272 (288)
T KOG1586|consen 245 EEQDIEKFTEVVKEFDSISRL--DQWKTTI 272 (288)
T ss_pred hhhhHHHHHHHHHhhhccchH--HHHHHHH
Confidence 122233445666777776653 3465433
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.29 E-value=42 Score=21.28 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=18.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 008147 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (576)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 451 (576)
..+.|-..++..++++|.+.|+..+...+..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344455555555666665555555555555444
No 371
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.05 E-value=2.2e+02 Score=28.32 Aligned_cols=10 Identities=30% Similarity=0.218 Sum_probs=4.6
Q ss_pred HHHHHHHHhC
Q 008147 394 MEVLSDMKSL 403 (576)
Q Consensus 394 ~~~~~~m~~~ 403 (576)
.+-++.|...
T Consensus 300 ~~ei~~mk~~ 309 (413)
T PHA02875 300 IIELRRIKSE 309 (413)
T ss_pred HHHHHHHHhh
Confidence 3344455543
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.05 E-value=2.2e+02 Score=28.44 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=64.1
Q ss_pred HHhcCChHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008147 244 CANAGQVDRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322 (576)
Q Consensus 244 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 322 (576)
-...|++-.|-+ ++..+....-.|+.... ....+...|.++.+...+...... +.....+...++......|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 334566555443 33333333223333322 233345667777777766655442 22244566667777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008147 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (576)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 369 (576)
|...-.-|....++. +.+.......--..|-++++.-.|+++...+
T Consensus 376 a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 777776666554432 2222222222334556677777777766543
No 373
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.96 E-value=3e+02 Score=29.96 Aligned_cols=79 Identities=9% Similarity=0.123 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 008147 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (576)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (576)
.-...|+.++..|+++.|+++-..-++ .-.++...-+..+...+++..|.+.+.++. .++..+.--+....
T Consensus 360 E~R~vWk~yLd~g~y~kAL~~ar~~p~-----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 360 EARDVWKTYLDKGEFDKALEIARTRPD-----ALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEIN 430 (911)
T ss_pred chHHHHHHHHhcchHHHHHHhccCCHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcC
Confidence 344579999999999999988753311 112233334456777788999998888873 34555555555566
Q ss_pred ChHHHHHHH
Q 008147 107 DSEGAFQVL 115 (576)
Q Consensus 107 ~~~~a~~~~ 115 (576)
+.+ ++..|
T Consensus 431 ~~~-~L~~~ 438 (911)
T KOG2034|consen 431 QER-ALRTF 438 (911)
T ss_pred CHH-HHHHH
Confidence 655 44443
No 374
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.70 E-value=4.9e+02 Score=32.24 Aligned_cols=316 Identities=12% Similarity=0.039 Sum_probs=157.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 008147 97 MLMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (576)
Q Consensus 97 ~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (576)
.+..+-.+++.+.+|+..++.-..... ......|-.+...|+..+++|...-+...... +...+ .-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344455567788888888887311100 11123344445588888888888777664221 22222 33445677
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHhcCChHHH
Q 008147 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRA 253 (576)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a 253 (576)
.|++..|...|+.+.+.+ ++...+++-++......|.++.+.-..+-.... ..+....++++ +.+--+.++++..
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~---~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN---RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc---cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 899999999999998774 344677887777777778877777666555432 23333333333 2333566777766
Q ss_pred HHHHHHHHhcCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCH
Q 008147 254 REVYKMIHKYNIKGTPEVYTIA--INCCSQTG--DWEFACSVYDDMTKKGVIP---------DEVFLSALIDFAGHAGKV 320 (576)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~a~~~~~~m~~~~~~p---------~~~~~~~li~~~~~~g~~ 320 (576)
...+. ..+. ..|... ...+.+.. +.-.-.+..+.+.+.-+.| -...|..++....-.
T Consensus 1538 e~~l~---~~n~----e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~--- 1607 (2382)
T KOG0890|consen 1538 ESYLS---DRNI----EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL--- 1607 (2382)
T ss_pred hhhhh---cccc----cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH---
Confidence 66655 2211 223222 22222221 1111112222222221111 012222222221111
Q ss_pred HHHHHHHHHHHHCCCCcC------HHHHHHHHHHHHccCCHHHHHHHHHH-HHhCCCC-----CCHHHHHHHHHHHHcCC
Q 008147 321 EAAFEILQEAKNQGISVG------IISYSSLMGACSNAKNWQKALELYEH-MKSIKLK-----PTVSTMNALITALCDGD 388 (576)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~-----~~~~~~~~li~~~~~~g 388 (576)
+-........ +..++ ..-|-.-+..=....+..+-.--+++ +...... .-..+|-...+.....|
T Consensus 1608 -el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1608 -ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred -HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 0011111111 11111 11111111111111112222111221 1111112 23467888888888899
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
+++.|...+-...+.+ .| ..+--...-..+.|+...|+.++++....
T Consensus 1685 ~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999998877776654 22 33444556678889999999999888743
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.09 E-value=1e+02 Score=24.49 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (576)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (576)
.+-++.+..-++.|++......+.+|.+.+++..|..+|+-++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444445555556666666666666666666666666655544
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.99 E-value=66 Score=23.57 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 008147 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (576)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (576)
|+.+.|++++..++ ..+-.|...+.++-..|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44455555555544 444444444444444443
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.88 E-value=23 Score=18.70 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=7.0
Q ss_pred HHHHcCCChhHHHHHHHH
Q 008147 382 TALCDGDQLPKTMEVLSD 399 (576)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~ 399 (576)
..+...|++++|...++.
T Consensus 9 ~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 9 NAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333333444444443333
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.88 E-value=2e+02 Score=27.51 Aligned_cols=58 Identities=7% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHH
Q 008147 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (576)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 205 (576)
-+.++++.++.. +.+...+..+|..+.+..+.+...+-++++.... +-+...|...|.
T Consensus 50 klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~ 107 (321)
T PF08424_consen 50 KLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 344444444442 2344445555555555555555555555555441 123444444443
No 379
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.76 E-value=1.8e+02 Score=26.62 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 142 KVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQVAKAFGAYGIMR 189 (576)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (576)
.+++|+.-|.+..+...+.... ....++..+.+.+++++....|.++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4455555555554432222222 22334555555666665555555553
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.31 E-value=2.4e+02 Score=27.93 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--CC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVN--AG-----IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (576)
...|++.++-.||+..|+++++.+.- .+ ..-...++-.+.-+|.-.+++.+|.+.|.....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666554421 11 122445566666777777777777777777653
No 381
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.27 E-value=56 Score=20.70 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhH
Q 008147 141 GKVDAMFEVFHEMVNAGIEPNVHTY 165 (576)
Q Consensus 141 g~~~~a~~~~~~~~~~~~~~~~~~~ 165 (576)
|-.+++..+++.|.+.|+..+...+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333333444444433333333333
No 382
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.62 E-value=1.9e+02 Score=26.62 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008147 125 ADCKLYTTLITTCAKSGKVDAMFEVF 150 (576)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (576)
.|+.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35677777788888888887777655
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.01 E-value=57 Score=23.35 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=20.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 008147 105 SKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFE 148 (576)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~ 148 (576)
.++.++|+..+....+.-..+. -.++..|+.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544322111 1234445555555555555443
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.77 E-value=36 Score=23.02 Aligned_cols=27 Identities=4% Similarity=-0.031 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 410 ITYSILLVACERKDDVEVGLMLLSQAK 436 (576)
Q Consensus 410 ~~~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (576)
.-.-.++.++...|++++|.++.+++.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445556666666666666555554
No 385
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.58 E-value=1.3e+02 Score=31.27 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHccCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 008147 309 ALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 380 (576)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 380 (576)
+++.+|...|++..+.++++.....+ -+.-...+|..++-..+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 56667777777777777776665432 2222345666666666666543 2333333332 34455566655
Q ss_pred HHHHH
Q 008147 381 ITALC 385 (576)
Q Consensus 381 i~~~~ 385 (576)
+++-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55443
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.48 E-value=55 Score=23.42 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 008147 282 TGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAF 324 (576)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~ 324 (576)
..+.++|+..|...++.-..|.. .++..++.+++..|++.+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433222111 23344444444444444443
No 387
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.98 E-value=62 Score=21.09 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=15.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 008147 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (576)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 412 (576)
+.-++.+.|++++|.+..+.+.+ +.|+..-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHH
Confidence 33455566666666666666555 35554433
No 388
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.70 E-value=1.3e+02 Score=25.81 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=21.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008147 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (576)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 421 (576)
+..|.+.|.+++|.+++++... .|+......-+....+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 3456677777777777777664 3454444444433333
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.37 E-value=2.3e+02 Score=26.28 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=104.8
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHH------HHHHHHHHHhhhHHHHHHHH-------HhhhCC-CCCH
Q 008147 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV------YHARFFNVCKSQKAIKEAFR-------FFKLVP-NPTL 92 (576)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~-------~~~~~~-~~~~ 92 (576)
.++...|.+++..++++|++.+.+++..|...+... ....+..++.+.|+...-.+ .+.... +..+
T Consensus 5 ~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~ 84 (421)
T COG5159 5 SSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKIT 84 (421)
T ss_pred chHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHH
Confidence 346678889999999999999999999886433322 22334455555444333222 222222 2233
Q ss_pred HhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCH
Q 008147 93 STFNMLMSVCASS-KDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEVFHEM----VNAGIEPNV 162 (576)
Q Consensus 93 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~ 162 (576)
....+++.-+-.. ..++.-+.+.....+...+-. ...-..++..+.+.|.+.+|+.+...+ .+..-+|+.
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 4445555544332 334444444444333211111 122234677778888888877655443 333334443
Q ss_pred hhHHHH-HHHHHhcCCHHHHHHHHHHHHh----CCCCcCHhHHHHHHHH--HHccCCHHHHHHHHHHHhhCCCCCCCCHH
Q 008147 163 HTYGAL-IDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (576)
Q Consensus 163 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 235 (576)
.+...+ -..|-.-..+.++..-+...+. .-+||-...---|+++ .|...++..|...|-+..+.......|..
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~k 244 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVK 244 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHH
Confidence 332222 1234444444444433333322 1244444444444444 34456677777777766654333334433
Q ss_pred H
Q 008147 236 T 236 (576)
Q Consensus 236 ~ 236 (576)
.
T Consensus 245 A 245 (421)
T COG5159 245 A 245 (421)
T ss_pred H
Confidence 3
No 390
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.36 E-value=54 Score=22.20 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 008147 168 LIDGCAKAGQVAKAFGAYGIM 188 (576)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m 188 (576)
+|.+|...|++++|.+++.++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 391
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.32 E-value=3.1e+02 Score=27.78 Aligned_cols=93 Identities=10% Similarity=0.042 Sum_probs=60.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008147 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC---DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (576)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 418 (576)
-+.+++.+-+.|-..+|..++..+.... +|+...|..+|..-. .+| ..-+.++++.|... +-.|+..|.-.+.-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDLWMDYMKE 539 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHHHHHHHHh
Confidence 3556777777788888888888877654 567777777765422 223 66667777776543 22566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008147 419 CERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~ 437 (576)
-...|..+.+-.++.++.+
T Consensus 540 e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hccCCCcccccHHHHHHHH
Confidence 6677777777666666554
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.67 E-value=1.6e+02 Score=30.69 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHhHHHHHHHHHHccCCHH------HHHHHHHHHhhCCCCCCCCHHHHH
Q 008147 167 ALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (576)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
+|+.+|..+|++..+.++++.+... |-+.=...+|..|+...+.|.++ .|.+++++.. +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-----ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-----LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-----cCCcchHHH
Confidence 7889999999999999999988754 33334567888888888888754 3444444432 456777888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 008147 239 ALMKACANAGQVDRAREVYKMIHK 262 (576)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~ 262 (576)
.|+.+-...-+-.....++.....
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 777665543333344444444443
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=47.24 E-value=3.8e+02 Score=28.50 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=87.1
Q ss_pred HHHH-hcCChhHHHHHHHHHHHcCC---CCch-HHHHHHHHHHHhhhHHHHHHHHHhhhCC----C----CCHHhHHHH-
Q 008147 33 NRLI-RQGRISECIDLLEDMERKGL---LDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP----N----PTLSTFNML- 98 (576)
Q Consensus 33 ~~l~-~~g~~~~A~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~----~~~~~~~~l- 98 (576)
+.|+ ...++++|...+++....-. +.+. -....++.+++.+.+... |.+..++.. . +-...+..+
T Consensus 67 ~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~ 145 (608)
T PF10345_consen 67 SILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLK 145 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3444 68899999999997644321 1111 122334455555544333 777666532 1 111222333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------CCCCHhh
Q 008147 99 MSVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCA--KSGKVDAMFEVFHEMVNAG---------IEPNVHT 164 (576)
Q Consensus 99 i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~ 164 (576)
+..+...+++..|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+..+.+.... -.|...+
T Consensus 146 ~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~ 225 (608)
T PF10345_consen 146 IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKA 225 (608)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence 223333479999999998876532 2444555555555544 3455677777777764321 1234566
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHH
Q 008147 165 YGALIDGCA--KAGQVAKAFGAYGIMR 189 (576)
Q Consensus 165 ~~~li~~~~--~~g~~~~A~~~~~~m~ 189 (576)
|..+++.++ ..|+++.+...++++.
T Consensus 226 ~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 226 LFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777766544 5777777766665553
No 394
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.08 E-value=2.9e+02 Score=27.86 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=46.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCC-----------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 008147 343 SSLMGACSNAKNWQKALELYEHMKS-------IKLKPT-----------VSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (576)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (576)
|.+...+.+.|.+..+..+|....+ .|++|. ..+||. .-.|...|++-.|.+.|.+....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v- 364 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV- 364 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-
Confidence 4444445555555555555554442 333331 233443 33466788888888888887654
Q ss_pred CCCCHHHHHHHHHHHHh
Q 008147 405 LCPNTITYSILLVACER 421 (576)
Q Consensus 405 ~~p~~~~~~~ll~a~~~ 421 (576)
+..++..|..+..+|..
T Consensus 365 fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 56678888888888854
No 395
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.98 E-value=83 Score=24.24 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=19.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008147 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (576)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (576)
+++.+.+|...++|+++.+.|.++| +.+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4455566667777777777777666 34443333
No 396
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.46 E-value=2.5e+02 Score=26.28 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=37.2
Q ss_pred hcCChHHHHHHH-HHHHhcCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008147 246 NAGQVDRAREVY-KMIHKYNIKGTPE----VYTIAINCCSQTGDWE-FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (576)
Q Consensus 246 ~~g~~~~a~~~~-~~~~~~~~~~~~~----~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (576)
+...+++..... +.|.+.++ |++. +|..++++---+.+-+ -|...++.+ .+|..++.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCCh
Confidence 333445544444 45566554 4433 4777766543332211 122333332 358889999999998
Q ss_pred HHHHH
Q 008147 320 VEAAF 324 (576)
Q Consensus 320 ~~~a~ 324 (576)
.+..+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 77554
No 397
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.50 E-value=73 Score=25.35 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHH
Q 008147 93 STFNMLMSVCASSKDSEGAFQVLR 116 (576)
Q Consensus 93 ~~~~~li~~~~~~~~~~~a~~~~~ 116 (576)
..|......+-..|++.+|.++|+
T Consensus 100 lfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 100 LFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444555555666666666654
No 398
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.46 E-value=4.5e+02 Score=28.83 Aligned_cols=228 Identities=13% Similarity=0.080 Sum_probs=117.3
Q ss_pred HHccCCHHHHHHHHHHHhhCCC--CCCCCH---HHHHHHH-HHHHhcCChHHHHHHHHHHHhc----CCCCCHHHHHHHH
Q 008147 207 CGQSGAVDRAFDVLAEMNAEVH--PVDPDH---ITIGALM-KACANAGQVDRAREVYKMIHKY----NIKGTPEVYTIAI 276 (576)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~---~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li 276 (576)
.....++++|..+..++...-. +..+.. ..++.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788888888887654310 111111 1233222 1234567888888877766543 2233455677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-----HHHhcCCH--HHHHHHHHHHHHCCC------CcCHHHHH
Q 008147 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-----FAGHAGKV--EAAFEILQEAKNQGI------SVGIISYS 343 (576)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~-----~~~~~g~~--~~a~~~~~~~~~~~~------~~~~~~~~ 343 (576)
.+..-.|++++|..+..+..+..-.-+...+..... .+...|+. .+.+..+........ .+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888888999999988877655422223333322222 34456632 233333333332210 12233455
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHhCCCCC----CHHHHHHHH
Q 008147 344 SLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTM--NALITALCDGDQLPKTMEVLSDMKSLGLCP----NTITYSILL 416 (576)
Q Consensus 344 ~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll 416 (576)
.+..++.+. +...++..-+.........|-.... ..|+......|++++|...+.++......+ +-.+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555551 1112222222222222212222222 256777888999999999988876543222 222222222
Q ss_pred --HHHHhcCCHHHHHHHHHH
Q 008147 417 --VACERKDDVEVGLMLLSQ 434 (576)
Q Consensus 417 --~a~~~~g~~~~a~~~~~~ 434 (576)
......|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 233457887777766654
No 399
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.33 E-value=16 Score=29.11 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=19.2
Q ss_pred cccccchhhhhHHHHHHHcCCCccc
Q 008147 546 GFGEYDPRAFSLLEVCRELKLEYFT 570 (576)
Q Consensus 546 ~~~~~~~~a~~~~~~~~~~g~~p~~ 570 (576)
.+|... .|..+|.+|.+.|--||-
T Consensus 107 ~ygsk~-DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 107 AYGSKT-DAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhccCC-cHHHHHHHHHhCCCCCcc
Confidence 345443 699999999999999983
No 400
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.78 E-value=20 Score=28.64 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=19.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008147 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (576)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (576)
..|.-.+|..+|..|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345556677777777777777764 4555543
No 401
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.40 E-value=4.8e+02 Score=28.90 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=34.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHH----HHHH-HHHHhhhHHHHHHHHHhhhCC
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVY----HARF-FNVCKSQKAIKEAFRFFKLVP 88 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l-~~~~~~~~~~~~A~~~~~~~~ 88 (576)
...|+...++++|+.+-+.....+ |..... +... +-....+|++++|.+.|.++.
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 345677888999999887666544 322211 1111 112445788999999998764
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.39 E-value=1.2e+02 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (576)
Q Consensus 405 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (576)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777788777788888888888777777766
No 403
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.14 E-value=2.9e+02 Score=26.36 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008147 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (576)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (576)
-+.++++.++.+. -+...+...+..+.+..+.+...+-++.+.... +-+...|...++.
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 3444444444422 234444444455555555555555555554442 1234444444443
No 404
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.08 E-value=1.2e+02 Score=24.81 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 008147 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (576)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (576)
++..+...++.-.|.++++.+.+.++..+..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 3344444444445555555555544444333
No 405
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.61 E-value=4.3e+02 Score=28.11 Aligned_cols=219 Identities=14% Similarity=0.150 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCcCHh--
Q 008147 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-------VAKAFGAYGIMRSKNVKPDRV-- 198 (576)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-- 198 (576)
.+|. +|-.|.++|++++|.++..+..+. .......+-..+..|....+ -++...-|++........|+.
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3443 566788999999999999554433 24455667777888776432 245566666666543222332
Q ss_pred -HHHHHHHHHHccC-CHHH----HHHH--HHHH--hhCCCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 008147 199 -VFNALITACGQSG-AVDR----AFDV--LAEM--NAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (576)
Q Consensus 199 -~~~~ll~~~~~~g-~~~~----a~~~--~~~~--~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (576)
.|..+ ..|--.. ...+ .+.. ++-. .....+.. .+..++.. ....+...-+....
T Consensus 191 AvY~il-g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~-------------LQ~~i~~~Ge~~F~ 256 (613)
T PF04097_consen 191 AVYKIL-GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLED-------------LQKLILKYGESHFN 256 (613)
T ss_dssp HHHHHH-HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHH-------------HHHHHHHH-GGGCT
T ss_pred HHHHHH-hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHH-------------HHHHHHHhchhhcc
Confidence 23322 1111110 0100 1111 0000 00000000 01112211 11112122222222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHH
Q 008147 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSL 345 (576)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l 345 (576)
+ ....-.....+.-.|+++.|++.+.+ ..+...|.+++...+..|.-.+-.+... ..+.... -.|...-+..|
T Consensus 257 ~-~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arL 330 (613)
T PF04097_consen 257 A-GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARL 330 (613)
T ss_dssp T-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred c-chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHH
Confidence 2 11112234556678999999998887 2223345666665555443222211111 2222211 01122567778
Q ss_pred HHHHHc---cCCHHHHHHHHHHHHhC
Q 008147 346 MGACSN---AKNWQKALELYEHMKSI 368 (576)
Q Consensus 346 i~~~~~---~g~~~~A~~~~~~~~~~ 368 (576)
|..|.+ ..+..+|.+.|--+...
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 888875 46788888888776654
No 406
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.90 E-value=1.5e+02 Score=24.40 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008147 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (576)
+...+.+.|++.++ --..++..+.+.+..-.|.++++++.+.+...+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455566666553 345566777777777778888888887766555555555555555544
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.23 E-value=3.5e+02 Score=26.65 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=31.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 008147 278 CCSQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGH--AGKVEAAFEILQEAKNQ 333 (576)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~a~~~~~~~~~~ 333 (576)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777765 433333 34444444443 34566777777765544
No 408
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.75 E-value=2.7e+02 Score=25.03 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 008147 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (576)
Q Consensus 406 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 446 (576)
.|.+.....++..|.. +++++|.+++.++.+.|+.|...+
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii 275 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDII 275 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHH
Confidence 4666666667766644 677888888888888888776644
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.19 E-value=1.5e+02 Score=30.55 Aligned_cols=152 Identities=12% Similarity=0.017 Sum_probs=95.1
Q ss_pred CCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH
Q 008147 159 EPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (576)
Q Consensus 159 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (576)
-|+..+..+++.-.... ..-+-+-.++..|..- +.|--.+.|...--+--.|+...|.+.+....... +.. ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~-p~~-~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLA-PLQ-QDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccC-hhh-hccc
Confidence 35666666555433322 1234455566666532 23333333332223344688888888887765431 222 2234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008147 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (576)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (576)
...|.+...+.|...+|..++.+..... ...+-++..+.+++.-..+.+.|++.|++..+.... +...-+.+...-|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 5566777777888888888888777665 455678888999999999999999999998887544 5556666655444
No 410
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.26 E-value=1.3e+02 Score=21.57 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 008147 133 LITTCAKSGKVDAMFEVFHEMVNAG 157 (576)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~~~~~~ 157 (576)
+++.+.++.-.++|+++++.+.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555555555555555555555
No 411
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.22 E-value=3e+02 Score=27.55 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008147 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 367 (576)
.+++-.++++.+.+.| .+| ....-++.|.+.+++++|...+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 4566666777766664 222 334456777777777777777776654
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.21 E-value=1.5e+02 Score=25.61 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 008147 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (576)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (576)
.|+...|..++..+...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57777777777777777777777777777765
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.81 E-value=60 Score=32.21 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=63.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC---HHhHHHHHHHHHhcCCh
Q 008147 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDS 108 (576)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~ 108 (576)
.|...+.+.++.|+.++.+.++.. |+.+.+...-..+..+.+++..|+.=+.+..+.+ ...|-.-..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 455667889999999999999887 6666665555455555555655555444443222 22333334455666677
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008147 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (576)
Q Consensus 109 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 138 (576)
.+|+..|+..... .|+..-....+.-|-
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 7777777776653 566655555554443
No 414
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.70 E-value=16 Score=34.34 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhhhCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 008147 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFE 148 (576)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~ 148 (576)
..|.++.|++.|.... ++....|..-.+++.+.++...|++=++...+.+ || ..-|-.--.+..-.|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHH
Confidence 4466778887776542 4445556666667777777777777777666543 33 2233333344455678888888
Q ss_pred HHHHHHHCCCCCCHhhH
Q 008147 149 VFHEMVNAGIEPNVHTY 165 (576)
Q Consensus 149 ~~~~~~~~~~~~~~~~~ 165 (576)
.|....+.++.+....|
T Consensus 204 dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHhccccHHHHHH
Confidence 88888777665554443
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.66 E-value=1.9e+02 Score=22.30 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 307 LSALIDFAGHAGKVEAAFEILQEAKN 332 (576)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (576)
|..++..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666554
No 416
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.97 E-value=6.9e+02 Score=28.56 Aligned_cols=169 Identities=10% Similarity=0.104 Sum_probs=89.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCC--HHhHHHHHHHHHhcCChHHHHH
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPT--LSTFNMLMSVCASSKDSEGAFQ 113 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~li~~~~~~~~~~~a~~ 113 (576)
..|...+|+.+|.+... |+..++ .++..+....-.+..+.+ .+.+ ++. ..-|..+++.+-+.+..+.+.+
T Consensus 932 ~tge~~kAl~cF~~a~S-g~ge~~-aL~~lv~~~~p~~~sv~d-----G~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 932 GTGEPVKALNCFQSALS-GFGEGN-ALRKLVYFLLPKRFSVAD-----GKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred cCCchHHHHHHHHHHhh-ccccHH-HHHHHHHHhcCCCCchhc-----CCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 57888899999988775 332333 333322221111000000 0011 122 3346778888888888888888
Q ss_pred HHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHH------
Q 008147 114 VLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVA------ 179 (576)
Q Consensus 114 ~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~------ 179 (576)
+-...++.- +++ ..+++.+.+.....|.+.+|.+.+-. .||.. +...++..++.+|.++
T Consensus 1005 lA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fp 1077 (1480)
T KOG4521|consen 1005 LAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFP 1077 (1480)
T ss_pred HHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCC
Confidence 887777642 322 34567777777777777777655433 24433 4455666666776653
Q ss_pred ------HHHH-HHHHHHhCCCCcC-HhHHHHHHHHHHccCCHHHHHHHH
Q 008147 180 ------KAFG-AYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVL 220 (576)
Q Consensus 180 ------~A~~-~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 220 (576)
+... +++..-+. .+.. ...|+.|-..+...+++.+|-.+.
T Consensus 1078 figl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred ccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 3333 22222111 1112 233444555556667766665543
No 417
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.69 E-value=3.3e+02 Score=24.75 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=46.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc------CCCCchHHH-------HHHHH---HHHhhhHHHHHHHHHhhhCC---CCC
Q 008147 31 SYNRLIRQGRISECIDLLEDMERK------GLLDMDKVY-------HARFF---NVCKSQKAIKEAFRFFKLVP---NPT 91 (576)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~------~~~~~~~~~-------~~~l~---~~~~~~~~~~~A~~~~~~~~---~~~ 91 (576)
--|.|.+.|++.+|..-|.+.+-. .-.|....+ ..+++ +.....|++-++++.-..+. +.|
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n 263 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN 263 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch
Confidence 357788999999988887765321 001222211 11222 22233344544544443332 345
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 008147 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121 (576)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 121 (576)
+..|-.-..+.+..-+..+|..=|...++.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 555555555555555666666655555543
No 418
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=36.68 E-value=73 Score=17.21 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=15.7
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHH
Q 008147 39 GRISECIDLLEDMERKGLLDMDKVYH 64 (576)
Q Consensus 39 g~~~~A~~~~~~~~~~~~~~~~~~~~ 64 (576)
|+++.|..+|+++++.. |....+.
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W 24 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELW 24 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHH
Confidence 46778888888888754 4444433
No 419
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.66 E-value=72 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 159 (576)
|+.-|....+.||+++|++++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445566666666666666666666655544
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.27 E-value=75 Score=29.61 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=33.7
Q ss_pred CCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008147 90 PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131 (576)
Q Consensus 90 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 131 (576)
++.. -||..|....+.||+++|+.++++..+.|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3444 46799999999999999999999999999765444443
No 421
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.13 E-value=5.9e+02 Score=27.52 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=51.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 008147 99 MSVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (576)
Q Consensus 99 i~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (576)
|+.+.+.+.+++|+.+.+.... ..| -.......|..+...|++++|-...-.|.. -+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 4455556666666665554332 222 233455566666666666666666666652 2445555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc
Q 008147 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (576)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 209 (576)
++...... -+....-..+...|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 54433222 12221112344556666655554
No 422
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=36.13 E-value=3.8e+02 Score=25.34 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH
Q 008147 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (576)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (576)
...+..|..+..++++.+.++-+++....+ |.=-..+.+..+.+.+.|
T Consensus 100 ad~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 100 ADRVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 345556777788888888888888887765 434445556666666655
No 423
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.69 E-value=2.6e+02 Score=26.22 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc----------cCCHHHH
Q 008147 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----------SGAVDRA 216 (576)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----------~g~~~~a 216 (576)
.++|+.+...++.|.-..+.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 468888888888898888887777788888889999999988764 2235556655553 5888888
Q ss_pred HHHHHH
Q 008147 217 FDVLAE 222 (576)
Q Consensus 217 ~~~~~~ 222 (576)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888865
No 424
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=35.49 E-value=70 Score=20.10 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=23.3
Q ss_pred HHHHhcCCchhhhhccccccccccccccchh-hhhHHHHHHHcCCCcc
Q 008147 523 RLVENLGVSADALKRSNLCSLIDGFGEYDPR-AFSLLEVCRELKLEYF 569 (576)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-a~~~~~~~~~~g~~p~ 569 (576)
.+.+..|+.+..... .|.+-+...++ ...+.+-+.+.|+.||
T Consensus 4 dIA~~agvS~~TVSr-----~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 4 DIAREAGVSKSTVSR-----VLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHTSSHHHHHH-----HHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HHHHHHCcCHHHHHH-----HHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 344555666654432 33333333322 3468888889999997
No 425
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.20 E-value=1.9e+02 Score=21.48 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=11.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 008147 134 ITTCAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~~~ 154 (576)
.......|+.++|.+.+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 344455566666666665554
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.79 E-value=80 Score=21.67 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008147 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (576)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 157 (576)
..++.++..+++..-.++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444444
No 427
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.59 E-value=3.7e+02 Score=24.39 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHH
Q 008147 318 GKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKTME 395 (576)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 395 (576)
.+++.|...+.+.+..+ |+. .-|+.-+..+.+..+++.+..=-.+..+. .||.. ..-.+..++.....+++|+.
T Consensus 24 k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 44555555555444432 333 33344444555556665555444444432 34432 22233444555566666666
Q ss_pred HHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 396 VLSDMKS----LGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (576)
Q Consensus 396 ~~~~m~~----~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 433 (576)
.+.+... ..+.|-......|..+=-..=.+.+..++.+
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 6665522 2233344445555544444334444444443
No 428
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=33.58 E-value=1.5e+02 Score=32.96 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=52.6
Q ss_pred CCcccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 008147 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (576)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (576)
+.|..+.. -...|..|-....+.++.++|..|...++......++..+...+.+.+.+.+|..+|....
T Consensus 73 k~Y~nD~R-fl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Gi 141 (974)
T KOG1166|consen 73 KRYRNDPR-FLILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGI 141 (974)
T ss_pred hhccccHH-HHHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33454444 3445555556778889999999999999877778888888888888888999999987654
No 429
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.16 E-value=2.6e+02 Score=23.64 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=19.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 008147 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (576)
Q Consensus 136 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 177 (576)
.+...++.-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 34 ~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 34 LMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333334444455555555555444444443344444444443
No 430
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.83 E-value=2e+02 Score=21.02 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChH
Q 008147 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (576)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 109 (576)
-.+++.+.+.|++.... .-.+-......++|.++++.++.....+|.....++-..|...
T Consensus 19 ~~v~~~L~~~~Vlt~~~-----~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 19 KYLWDHLLSRGVFTPDM-----IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHhcCCCCHHH-----HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34677777777653321 1111223344667777777777777777777777766665443
No 431
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=32.72 E-value=5.9e+02 Score=26.53 Aligned_cols=86 Identities=23% Similarity=0.224 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHH
Q 008147 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (576)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (576)
.|+...|.+.+....-....-..+....+.....+.|....|-.++.+..... ...+-++..+..+|.-..+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555554443322111111223333344444444445555554444433 22334444555555555556666655
Q ss_pred HHHHHhC
Q 008147 362 YEHMKSI 368 (576)
Q Consensus 362 ~~~~~~~ 368 (576)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5555543
No 432
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.50 E-value=4e+02 Score=24.52 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=22.4
Q ss_pred HHHHHHHhhh--CCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 008147 77 IKEAFRFFKL--VPNPTLSTFNMLMSVCASSKDSEGAFQVL 115 (576)
Q Consensus 77 ~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 115 (576)
.+.|++.-+. -+..|+.....+...+.+.+++..|...|
T Consensus 73 i~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 73 IKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4445544422 12456677777778888888887777655
No 433
>PHA02875 ankyrin repeat protein; Provisional
Probab=32.15 E-value=5.1e+02 Score=25.65 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHh--HHHHHHHHHHccCC
Q 008147 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV--VFNALITACGQSGA 212 (576)
Q Consensus 137 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~ 212 (576)
.+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3445555433 33334555554322 22334444555655432 3333444444322 11123334445555
Q ss_pred HHHHHHHH
Q 008147 213 VDRAFDVL 220 (576)
Q Consensus 213 ~~~a~~~~ 220 (576)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 55544444
No 434
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.11 E-value=2e+02 Score=30.23 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008147 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 154 (576)
+...-.-++..|.+.|-.+.+.++.+.+-
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555555555555554443
No 435
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.04 E-value=2.1e+02 Score=21.17 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=29.9
Q ss_pred HcCCChhHHHHHHHHHHh----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008147 385 CDGDQLPKTMEVLSDMKS----LGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKED 438 (576)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (576)
.+.|++.+|.+.+.+.-+ .+..+. ......+.......|+.++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 355666666555444322 221111 122233445567788889888888887653
No 436
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.59 E-value=1.5e+02 Score=20.34 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008147 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (576)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 140 (576)
|....++-++..+++..-.+.++..+.++..+| ..+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 455667888888888888888888888888888 45667776666666553
No 437
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=31.33 E-value=2.6e+02 Score=26.22 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=34.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC
Q 008147 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (576)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (576)
+.|+.+.|..+|+..+... |.+..+...++.+.-..+++-+|-++|-+.
T Consensus 128 ~~Gk~ekA~~lfeHAlala--P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALA--PTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hccchHHHHHHHHHHHhcC--CCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 6788888888888887776 666666666666655556666666666554
No 438
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.14 E-value=93 Score=27.62 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 008147 95 FNMLMSVCASSKDSEGAFQVLRLVQEAG 122 (576)
Q Consensus 95 ~~~li~~~~~~~~~~~a~~~~~~m~~~~ 122 (576)
.-.+.....+.|+.++|.+.|..+...+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3345566777889999999998888765
No 439
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.88 E-value=2.1e+02 Score=21.20 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 008147 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (576)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (576)
.+++.+.+.|++.... . -.+-......+++.++++.++...+.+|..+..++-..+
T Consensus 24 ~v~~~L~~~gvlt~~~-~----~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 24 ELLIHLLQKDILTDSM-A----ESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HHHHHHHHcCCCCHHH-H----HHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 4677777777653321 1 111222234566777777777777777777777765444
No 440
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.94 E-value=2.3e+02 Score=22.00 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008147 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (576)
Q Consensus 97 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 137 (576)
++++.+.++...++|+++.+.|.++| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 46677788889999999999999998 55655544444433
No 441
>PRK09857 putative transposase; Provisional
Probab=29.82 E-value=4.8e+02 Score=24.56 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC
Q 008147 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (576)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (576)
+..++......++.++..++++.+.+.. +......-++..-+.+.|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4455555455566666666666665542 22333333445555555655666666666666665444
No 442
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=29.44 E-value=5.2e+02 Score=24.86 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (576)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 155 (576)
||......++++.+...........++.+.+
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~ 258 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALLQ 258 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHhc
Confidence 4555555555555544444333333444443
No 443
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.09 E-value=2.3e+02 Score=20.74 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008147 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (576)
Q Consensus 113 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 155 (576)
++|+.....|+..|+.+|..+++.+.-.=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666655554455555555555543
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.88 E-value=3e+02 Score=21.91 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008147 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHE 152 (576)
Q Consensus 110 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (576)
.+.++|..|...|+-.. ...|..-...+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666655332 44555566666666666666666653
No 445
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=5.4e+02 Score=24.69 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHHHcCCChhHHHHHHHHHHh
Q 008147 382 TALCDGDQLPKTMEVLSDMKS 402 (576)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~ 402 (576)
..+...|+.+++.+++.+..+
T Consensus 123 r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 123 RLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 334445555555555554443
No 446
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.40 E-value=1.9e+02 Score=28.91 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=43.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhH
Q 008147 315 GHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPK 392 (576)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 392 (576)
...+.++.|..++.++++.. |+-. .|..-..++.+.+++..|+.=+...++.. |+ ...|-.=..++...+.+.+
T Consensus 15 l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 34455566666666555542 3222 22222245555566555555555444432 21 1111111122222334444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008147 393 TMEVLSDMKSLGLCPNTITYSILLVAC 419 (576)
Q Consensus 393 A~~~~~~m~~~g~~p~~~~~~~ll~a~ 419 (576)
|+..|+.... +.|+..-....+.-|
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 4444444333 455555555555444
No 447
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.29 E-value=54 Score=31.02 Aligned_cols=90 Identities=11% Similarity=0.020 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 008147 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLM 430 (576)
Q Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~ 430 (576)
.|.++.|++.|...++.+ ++....|..=.+.+.+.++...|++=+....+ +.||.. -|-.--.+....|+++++..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 445555665555555443 33344444444555555555555555555544 344432 23222334444566666666
Q ss_pred HHHHHHHcCCCCCH
Q 008147 431 LLSQAKEDGVIPNL 444 (576)
Q Consensus 431 ~~~~~~~~g~~~~~ 444 (576)
.+....+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 66666665554443
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.08 E-value=3.2e+02 Score=23.10 Aligned_cols=37 Identities=5% Similarity=-0.049 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 008147 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (576)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (576)
++.-.|.++++.+.+.+..++..|...-+..+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3334445555555444444444443334444444443
No 449
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.82 E-value=2.2e+02 Score=20.03 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008147 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (576)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (576)
+.+.|..++..+.... +.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4466666666665544 55677888776655443
No 450
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=27.80 E-value=6.3e+02 Score=25.29 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008147 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (576)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 456 (576)
...|+.-|...|...+|...++++-- .+--....+.+++.+.-+.|+-...+.+++..-+.|+- |-+.|-..|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh
Confidence 45678889999999999998887531 01224567889999999999988888888888776643 45556555544
No 451
>PRK10941 hypothetical protein; Provisional
Probab=27.64 E-value=5e+02 Score=24.08 Aligned_cols=56 Identities=13% Similarity=-0.085 Sum_probs=23.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008147 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (576)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (576)
+-.+|.+.++++.|+++.+.+..-. +.|..-+.--.-.|.+.|.+..|..=++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3344445555555555555444321 1122223333333455555555554444443
No 452
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.55 E-value=4.1e+02 Score=25.07 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008147 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (576)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (576)
++++.+...++.|.-.++.-+.-.+.+.=.+.+++.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444444444444444444444444444445555544443
No 453
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.28 E-value=5.2e+02 Score=24.15 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCC--------CCcCHHHHHHHHHHH-HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 008147 321 EAAFEILQEAKNQG--------ISVGIISYSSLMGAC-SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (576)
Q Consensus 321 ~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (576)
+....+++.+-+.| ++.|...+|.++.-- .+...++++++-.++-- |-.--...|..+..-|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcHHHHH
Q 008147 392 KTMEVLSDMKSL----GLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV----MFKCIIGMCSRRYEKAR 462 (576)
Q Consensus 392 ~A~~~~~~m~~~----g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~~~~a~ 462 (576)
.+.+..++..+. |.+.|. .+-..+.-.|....-+++.++..+.|++.|.+-+.. +|..+..+-.|++.+|+
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred hh-HHhhhcccCCC
Q 008147 463 TL-NEHVLSFNSGR 475 (576)
Q Consensus 463 ~~-~~~~~~~~~~~ 475 (576)
.+ .+.+..|.+..
T Consensus 213 ~Ll~d~l~tF~S~E 226 (412)
T COG5187 213 ILLSDILPTFESSE 226 (412)
T ss_pred HHHHHHhccccccc
No 454
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.78 E-value=3.6e+02 Score=24.54 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=30.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhC---CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008147 203 LITACGQSGAVDRAFDVLAEMNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (576)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (576)
+...|...|++++|.++|+.+... ..=..+...+...+..++.+.|+.+....+--+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445566666666666666655321 111234444555666666666666665554433
No 455
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.72 E-value=7.7e+02 Score=25.93 Aligned_cols=271 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (576)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (576)
+..+...-+......++..+....-.-+--..+.=+.+.-.+++.++.. .. ...+..++++....|-......+.+
T Consensus 289 ~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~ 364 (574)
T smart00638 289 QIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQ 364 (574)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q ss_pred HHHHCCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCCh------hHHH
Q 008147 329 EAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-------STMNALITALCDGDQL------PKTM 394 (576)
Q Consensus 329 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~------~~A~ 394 (576)
.+....+.+ .....-..+-...+.-..+-...+++-+.....++.. .++.+++..+|..... ++..
T Consensus 365 ~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~ 444 (574)
T smart00638 365 WIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELL 444 (574)
T ss_pred HHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcHHHHHhhHHhhhcccC
Q 008147 395 EVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 473 (576)
Q Consensus 395 ~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~ 473 (576)
..+.+.......- |..--...|.++...|.......+...+. .....+...-...+.++.+
T Consensus 445 ~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~----------------- 506 (574)
T smart00638 445 KYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRN----------------- 506 (574)
T ss_pred HHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHH-----------------
Q ss_pred CCccchhhhHHHHHHHHHHHHHcCCCCchHHHHHHHhccCCCCchhHHhHHHHhcCCchhhhhccccccccc
Q 008147 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545 (576)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 545 (576)
....+...+..++-......-.|..+.+.+++...........+..|......+|+....+-+.+-|.
T Consensus 507 ----~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 507 ----LAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred ----HHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.69 E-value=3.7e+02 Score=24.43 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008147 275 AINCCSQTGDWEFACSVYDDMTK----KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (576)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (576)
+...|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+.-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34444444555555544444421 111 1122334444444555555555444433
No 457
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.90 E-value=5.6e+02 Score=24.05 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 008147 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (576)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (576)
++..+.+.++.....+.+..+.. ...-...+..+...|++..|+++..+..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444444444444444444432 2233344555556666666666665544
No 458
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.85 E-value=3.5e+02 Score=22.17 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 008147 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (576)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 389 (576)
.-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 33444444444444333333333333444444443
No 459
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.55 E-value=3.7e+02 Score=21.88 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008147 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKA 181 (576)
Q Consensus 106 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 181 (576)
.++-...+-+..-...+ .++..+--.+..++.+.. ++.+.+.+++++.+ ..........--|.-++.+.++++.+
T Consensus 12 ~d~~~~~e~~~rq~a~~-~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s 90 (149)
T KOG3364|consen 12 EDLIAGQEEILRQAARS-DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKS 90 (149)
T ss_pred hhhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHH
Q ss_pred HHHHHHHHhCCCCcC
Q 008147 182 FGAYGIMRSKNVKPD 196 (576)
Q Consensus 182 ~~~~~~m~~~g~~p~ 196 (576)
+++.+.+.+. .||
T Consensus 91 ~~yvd~ll~~--e~~ 103 (149)
T KOG3364|consen 91 LRYVDALLET--EPN 103 (149)
T ss_pred HHHHHHHHhh--CCC
No 460
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.46 E-value=1.4e+02 Score=17.08 Aligned_cols=9 Identities=0% Similarity=0.239 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 008147 392 KTMEVLSDM 400 (576)
Q Consensus 392 ~A~~~~~~m 400 (576)
.|..+|++.
T Consensus 5 RAR~IyeR~ 13 (32)
T PF02184_consen 5 RARSIYERF 13 (32)
T ss_pred HHHHHHHHH
Confidence 333333333
No 461
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.22 E-value=2e+02 Score=22.18 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=20.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008147 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (576)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 141 (576)
..+...+..-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333334444455555555555554444444444444444444
No 462
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=24.77 E-value=5.7e+02 Score=23.75 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 008147 357 KALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 404 (576)
Q Consensus 357 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 404 (576)
.|...|.+....+ +......+...|.. ..++.+|...|.+..+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555555555443 33333333333322 234556666666665554
No 463
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.63 E-value=6.4e+02 Score=24.31 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008147 390 LPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (576)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 455 (576)
.++.+.++..+... -|+. .-|-.+.......|.++..+.+|++++..|..|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34677777777763 4554 3467777778888888899999999998898888888888888765
No 464
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.56 E-value=6.9e+02 Score=24.63 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHHh
Q 008147 314 AGHAGKVEAAFEILQEAKNQGISVGII--SYSSLMGACS--NAKNWQKALELYEHMKS 367 (576)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~ 367 (576)
+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44789999999999999887 555444 4555556654 46678899999998775
No 465
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.16 E-value=7.1e+02 Score=24.67 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=50.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHH
Q 008147 104 SSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK---AGQVA 179 (576)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~ 179 (576)
..||...|+..++.+.... .++. .+ .+...+++.+-... ...+-..+-.+++++.+ -.+.+
T Consensus 202 s~GD~R~aLN~LE~~~~~~-~~~~~~~-------------~~~l~~~l~~~~~~-~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 202 SNGDARRALNLLELAALSA-EPDEVLI-------------LELLEEILQRRSAR-FDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred cCchHHHHHHHHHHHHHhc-CCCcccC-------------HHHHHHHHhhhhhc-cCCCcchHHHHHHHHHHhhccCCcC
Confidence 3577777777777666543 2221 11 12222222222111 13343444456666654 35678
Q ss_pred HHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCC
Q 008147 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (576)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 212 (576)
.|+-++-+|.+.|-.|....-..++-++-.-|.
T Consensus 267 AALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 267 AALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 888888888888766665555555555554443
No 466
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.04 E-value=6.2e+02 Score=23.91 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH---------HHHCCCCCC--
Q 008147 99 MSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSG-----KVDAMFEVFHE---------MVNAGIEPN-- 161 (576)
Q Consensus 99 i~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~---------~~~~~~~~~-- 161 (576)
+-++++.|... ...+++.+... .-.++...|..++..+.... ..+.....|+. +.+.|.++.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HhhHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 008147 162 VHTYGALIDGC-AKAGQ-----VAKAFGAYGIMRSKNV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (576)
Q Consensus 162 ~~~~~~li~~~-~~~g~-----~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (576)
......+++.. ..... .+.|.+.|+.....+. ..+...-..++...++.|+.+.-..+++.... .
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~ 198 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----S 198 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----c
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 008147 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDD 294 (576)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~ 294 (576)
++...-..++.+.+...+.+...++++.+...+..+.......+.... ....-.+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 467
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.71 E-value=1e+03 Score=26.46 Aligned_cols=39 Identities=10% Similarity=-0.010 Sum_probs=24.3
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 008147 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (576)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (576)
.|......+-+...++.+.... -.++....+.++..|++
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~--~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDN--RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhc--cccchHHHHHHHHHHHH
Confidence 4556667777777777776542 23455566666666654
No 468
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.61 E-value=4.1e+02 Score=21.75 Aligned_cols=15 Identities=7% Similarity=0.361 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHCC
Q 008147 143 VDAMFEVFHEMVNAG 157 (576)
Q Consensus 143 ~~~a~~~~~~~~~~~ 157 (576)
.-.|.++++.+.+.+
T Consensus 33 h~sa~eI~~~l~~~~ 47 (148)
T PRK09462 33 HVSAEDLYKRLIDMG 47 (148)
T ss_pred CCCHHHHHHHHHhhC
Confidence 334444444444443
No 469
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.44 E-value=5.6e+02 Score=23.18 Aligned_cols=57 Identities=9% Similarity=0.133 Sum_probs=28.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 008147 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMV 154 (576)
Q Consensus 98 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~ 154 (576)
++...-+.++++++...+..+...+...+..--+.|-.+|-. .|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 344555666666666666666666555555555544444422 233344444444443
No 470
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=23.26 E-value=7.9e+02 Score=24.87 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=90.5
Q ss_pred CCCcccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHh
Q 008147 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLST 94 (576)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~ 94 (576)
++..| .......|+..-...|++..|-+-+...++.. |..+..-.+...+....|+++.+...+... ......+
T Consensus 283 q~~~~-~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~ 359 (831)
T PRK15180 283 QEKQD-QIREITLSITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST 359 (831)
T ss_pred CcCCc-chhHHHHHHHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH
Confidence 33334 44555666666668899988866555555543 233333334455567788999998887543 3455567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008147 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (576)
Q Consensus 95 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 157 (576)
...+++..-+.|+++.|..+-+-|....++ ++.............|-++++.-.|.++....
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 778888888999999999999999876654 33333333333445677888888888877554
No 471
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=23.20 E-value=5.9e+02 Score=23.42 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 008147 95 FNMLMSVCASSKDSEGAFQVLRLVQE 120 (576)
Q Consensus 95 ~~~li~~~~~~~~~~~a~~~~~~m~~ 120 (576)
.+.+++.+.+.+....|..+.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 45566666666777777777766653
No 472
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=23.15 E-value=1.1e+03 Score=26.57 Aligned_cols=252 Identities=12% Similarity=0.005 Sum_probs=123.1
Q ss_pred hhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 008147 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (576)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 164 (576)
+.+.++|+..-...+..+.+.+..+ +...+..+.+ .++..+-...+.++.+.+........+..+.+ .+|..+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~V 700 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVV 700 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHH
Confidence 3344566666666666666655433 3344444432 23433433444444444321111223333332 245555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 008147 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (576)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (576)
-...+..+...+..+ ...+.. +.+ .+|...-...+.++.+.+..+. +..... .++..+-.....++
T Consensus 701 R~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~-----D~~~~VR~~aa~aL 766 (897)
T PRK13800 701 RAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT-----DENREVRIAVAKGL 766 (897)
T ss_pred HHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc-----CCCHHHHHHHHHHH
Confidence 555555555433211 112222 222 3454444555666665544332 122221 34555555566666
Q ss_pred HhcCChHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008147 245 ANAGQVDR-AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (576)
Q Consensus 245 ~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (576)
...+..+. +...+..+.+ .+++.+-...+.++.+.|....+...+....+. +|...-...+.++...+. +++
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a 839 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVA 839 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cch
Confidence 66655432 2333434333 345677777777777777765554444444443 355555566666666665 344
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008147 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 367 (576)
...+..+.+ .++..+-...+.++.+.+....+...+....+
T Consensus 840 ~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 840 VPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 455554443 34555556666666665333455555555554
No 473
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=6.7e+02 Score=23.94 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 008147 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (576)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (576)
++.+....++..+.+.+..| .|..+.. +..+..|...++++..+ +...+++-.+..
T Consensus 36 ~~~~~~e~l~~~Ird~~Map---~Ye~lce-------------------~~~i~~D~~~l~~m~~~--neeki~eld~~i 91 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP---LYEYLCE-------------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKI 91 (393)
T ss_pred cCHHHHHHHHHHHHhcccch---HHHHHHh-------------------hcceeccHHHHHHHHHh--hHHHHHHHHHHH
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 008147 363 EHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPNTITYSILL-VACERKDDVEVGLMLLSQAK 436 (576)
Q Consensus 363 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~ 436 (576)
+...+. |-.--...+-....-||+-|+-+.|++.+++..+. |.+.|...+..-+ --|....-+.+-++..+.+.
T Consensus 92 edaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li 171 (393)
T KOG0687|consen 92 EDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI 171 (393)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q ss_pred HcCCCCCHH----hHHHHHHHHHhcHHHHHhh-HHhhhcccC
Q 008147 437 EDGVIPNLV----MFKCIIGMCSRRYEKARTL-NEHVLSFNS 473 (576)
Q Consensus 437 ~~g~~~~~~----~~~~li~~~~~~~~~a~~~-~~~~~~~~~ 473 (576)
+.|-+-+.. +|..+-.+--|++.+|..+ .+.+..|.+
T Consensus 172 E~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 172 EEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
No 474
>PRK10941 hypothetical protein; Provisional
Probab=22.69 E-value=6.2e+02 Score=23.47 Aligned_cols=59 Identities=15% Similarity=0.023 Sum_probs=31.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 008147 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (576)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (576)
+.+-.+|.+.++++.|.++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344455556666666666666655533 23334444444455566666666555555443
No 475
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.67 E-value=5.3e+02 Score=28.37 Aligned_cols=128 Identities=9% Similarity=0.065 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008147 73 SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (576)
Q Consensus 73 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (576)
..|+++.|++.-.++.+ ...|..|+......|+.+-|+-.|++.+. |+.|--.|.-.|+.++-.++-..
T Consensus 655 e~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred hcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHH
Confidence 34555555554444433 24566666666666666666665554432 22222334445555555554444
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 008147 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (576)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (576)
...+ .|..+. ...-.-.|+.++-.++++..-. . + ..|. .-...|.-++|.++.++...+
T Consensus 724 ae~r---~D~~~~---~qnalYl~dv~ervkIl~n~g~---~-~-layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 724 AEIR---NDATGQ---FQNALYLGDVKERVKILENGGQ---L-P-LAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHhh---hhhHHH---HHHHHHhccHHHHHHHHHhcCc---c-c-HHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 3322 111111 1111124555555555543321 1 1 1221 123457778888888877654
No 476
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.59 E-value=1.9e+02 Score=22.55 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008147 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (576)
Q Consensus 97 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 141 (576)
.++......+..-.|.++++.+.+.+...+..|.-.-++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444445555566666666666655555554444444444444
No 477
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=5.9e+02 Score=23.14 Aligned_cols=79 Identities=18% Similarity=0.083 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHhHHHH-HHHHHHccCCHHHHHH
Q 008147 141 GKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQSGAVDRAFD 218 (576)
Q Consensus 141 g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~ 218 (576)
..++.|..-|.+.+.. .|+. .-|+.=+-.+.+..+++.+..--++.++. .||.+--.. +-.++.....+++|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 4455566655554443 4554 33444555566666666666555444443 455443333 3344455566677776
Q ss_pred HHHHH
Q 008147 219 VLAEM 223 (576)
Q Consensus 219 ~~~~~ 223 (576)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 66665
No 478
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.47 E-value=2.7e+02 Score=21.46 Aligned_cols=14 Identities=7% Similarity=0.174 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHcC
Q 008147 426 EVGLMLLSQAKEDG 439 (576)
Q Consensus 426 ~~a~~~~~~~~~~g 439 (576)
-.|.++++.+.+.+
T Consensus 17 ~sa~ei~~~l~~~~ 30 (116)
T cd07153 17 LTAEEIYERLRKKG 30 (116)
T ss_pred CCHHHHHHHHHhcC
Confidence 33444444444443
No 479
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=21.12 E-value=3.5e+02 Score=19.97 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=8.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 008147 132 TLITTCAKSGKVDAMFEVFHEMV 154 (576)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~~~ 154 (576)
.+...+...|++++|.+.+-.+.
T Consensus 27 ~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 27 ALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334444444444444444333
No 480
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.81 E-value=6.2e+02 Score=22.71 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=52.9
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008147 95 FNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (576)
Q Consensus 95 ~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (576)
|...++++.. .+++++|.+.+-.- .+.|+ .-.-++.++...|+.+.|..+++..... ..+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-
Confidence 4455555443 45566666655211 11222 1224666667777777777777765421 1122223333333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHhHHHHHHHHHHc
Q 008147 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (576)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 209 (576)
..++.+.+|+..-+...+.. ....+..++..+..
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 55677777777666554321 13355555555543
No 481
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.80 E-value=6e+02 Score=22.56 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHhCCCCC----CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008147 390 LPKTMEVLSDMKSLGLCP----NTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (576)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p----~~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~ 442 (576)
...|++.|.+..+..-.| +..+. -.+.....+.|+.++|.+.|.+++..+-.+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 345666666655433222 22333 334466788999999999999998764333
No 482
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.49 E-value=3.4e+02 Score=19.57 Aligned_cols=43 Identities=14% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCCCHHhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008147 88 PNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131 (576)
Q Consensus 88 ~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 131 (576)
+..+..-|| ++++.+.++.-.++|+++++.|.++| ..+...-+
T Consensus 26 ~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 26 PKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred ccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 334444454 56777888889999999999999998 55554433
No 483
>PRK12798 chemotaxis protein; Reviewed
Probab=20.31 E-value=8.6e+02 Score=24.19 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCcC----HhHHHHHHHHHHccCCHH
Q 008147 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA-KAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVD 214 (576)
Q Consensus 140 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~ 214 (576)
.|+-+++.+.+..+.....++....+-.|+.+-. ...+...|+++|+..+-. -|- .....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4666666666666655545555555555555433 334566666666665432 222 122233333445556655
Q ss_pred HHHHH
Q 008147 215 RAFDV 219 (576)
Q Consensus 215 ~a~~~ 219 (576)
++..+
T Consensus 203 rf~~l 207 (421)
T PRK12798 203 KFEAL 207 (421)
T ss_pred HHHHH
Confidence 55444
No 484
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=20.29 E-value=4.5e+02 Score=20.98 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=17.0
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008147 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (576)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (576)
+..+.+.++.-....+..+-..|.+..+..+|-.+|+-+
T Consensus 86 l~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 86 LQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 334444443333333444444444444455555555443
No 485
>PRK09857 putative transposase; Provisional
Probab=20.28 E-value=7.3e+02 Score=23.35 Aligned_cols=64 Identities=8% Similarity=0.047 Sum_probs=35.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008147 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (576)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~~~ 443 (576)
.++.-..+.++.++-.++++.+.+. +++......++..-+...|.-+++.++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333333445555555555555443 233333444555555555655667777788877777655
Done!