Query 008148
Match_columns 576
No_of_seqs 342 out of 1754
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 20:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 5.2E-15 1.1E-19 138.5 11.5 82 345-427 31-116 (144)
2 KOG0144 RNA-binding protein CU 99.6 1.1E-15 2.5E-20 161.3 5.6 154 272-433 54-214 (510)
3 KOG0153 Predicted RNA-binding 99.6 1.1E-14 2.5E-19 150.6 10.7 76 346-424 226-302 (377)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 9E-14 1.9E-18 144.6 10.8 80 347-427 268-351 (352)
5 KOG0149 Predicted RNA-binding 99.5 4.4E-14 9.6E-19 140.2 6.8 77 346-424 10-90 (247)
6 KOG0111 Cyclophilin-type pepti 99.4 9.8E-14 2.1E-18 136.6 6.4 81 346-427 8-92 (298)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4E-13 8.7E-18 139.7 10.8 79 348-427 3-85 (352)
8 PF00076 RRM_1: RNA recognitio 99.4 4.5E-13 9.7E-18 106.7 8.1 67 351-418 1-70 (70)
9 KOG0125 Ataxin 2-binding prote 99.4 3.3E-13 7.2E-18 139.0 8.8 80 345-425 93-174 (376)
10 TIGR01659 sex-lethal sex-letha 99.4 8.8E-13 1.9E-17 139.7 12.2 82 347-429 192-279 (346)
11 KOG0148 Apoptosis-promoting RN 99.4 4.6E-13 1E-17 135.2 8.1 149 272-428 82-241 (321)
12 TIGR01628 PABP-1234 polyadenyl 99.4 5.2E-13 1.1E-17 148.5 8.7 84 346-430 283-369 (562)
13 TIGR01659 sex-lethal sex-letha 99.4 1.2E-12 2.5E-17 138.8 10.3 81 345-426 104-188 (346)
14 TIGR01645 half-pint poly-U bin 99.4 2.5E-12 5.4E-17 144.4 13.1 79 347-426 203-285 (612)
15 PLN03120 nucleic acid binding 99.4 1.6E-12 3.5E-17 132.0 10.5 75 348-424 4-79 (260)
16 KOG0113 U1 small nuclear ribon 99.3 6.5E-12 1.4E-16 128.3 10.5 89 337-426 90-182 (335)
17 TIGR01628 PABP-1234 polyadenyl 99.3 8.7E-12 1.9E-16 138.7 10.3 83 345-428 175-264 (562)
18 PLN03213 repressor of silencin 99.3 7.9E-12 1.7E-16 134.1 9.4 79 346-425 8-88 (759)
19 smart00362 RRM_2 RNA recogniti 99.2 4.4E-11 9.6E-16 93.3 9.6 70 350-420 1-72 (72)
20 PF14259 RRM_6: RNA recognitio 99.2 2.9E-11 6.3E-16 97.7 8.6 67 351-418 1-70 (70)
21 KOG0107 Alternative splicing f 99.2 1.5E-11 3.3E-16 117.8 8.0 79 347-427 9-87 (195)
22 TIGR01645 half-pint poly-U bin 99.2 2.2E-11 4.7E-16 136.9 10.2 77 346-423 105-185 (612)
23 PLN03121 nucleic acid binding 99.2 4.1E-11 9E-16 120.4 10.6 76 347-424 4-80 (243)
24 KOG0148 Apoptosis-promoting RN 99.2 3.9E-11 8.5E-16 121.4 8.2 80 347-427 61-144 (321)
25 KOG4205 RNA-binding protein mu 99.2 1.9E-11 4E-16 127.7 6.0 152 272-431 26-182 (311)
26 COG0724 RNA-binding proteins ( 99.2 9.5E-11 2.1E-15 112.1 10.0 76 348-424 115-194 (306)
27 TIGR01622 SF-CC1 splicing fact 99.2 1E-10 2.2E-15 126.5 11.0 78 346-424 184-265 (457)
28 smart00360 RRM RNA recognition 99.2 1.3E-10 2.7E-15 90.2 8.4 67 353-420 1-71 (71)
29 KOG0122 Translation initiation 99.2 8.1E-11 1.8E-15 117.7 8.7 78 347-425 188-269 (270)
30 TIGR01648 hnRNP-R-Q heterogene 99.2 1.2E-10 2.6E-15 130.6 11.1 78 346-428 231-310 (578)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.3E-10 2.8E-15 127.8 11.0 80 345-426 272-352 (481)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.7E-10 3.6E-15 126.3 11.8 79 346-425 293-375 (509)
33 KOG4207 Predicted splicing fac 99.1 5E-11 1.1E-15 116.8 6.5 77 347-424 12-92 (256)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.5E-10 3.3E-15 127.3 10.7 76 347-425 1-78 (481)
35 TIGR01648 hnRNP-R-Q heterogene 99.1 1.5E-10 3.2E-15 129.7 9.8 78 346-424 56-137 (578)
36 TIGR01622 SF-CC1 splicing fact 99.1 3.2E-10 7E-15 122.6 11.6 78 346-425 87-168 (457)
37 PF13893 RRM_5: RNA recognitio 99.1 3.1E-10 6.8E-15 88.7 7.9 56 366-422 1-56 (56)
38 cd00590 RRM RRM (RNA recogniti 99.1 6.1E-10 1.3E-14 87.2 9.6 71 350-421 1-74 (74)
39 KOG0131 Splicing factor 3b, su 99.1 1.5E-10 3.2E-15 111.7 6.3 77 347-424 8-88 (203)
40 KOG0108 mRNA cleavage and poly 99.0 1.7E-09 3.6E-14 117.6 9.5 83 344-427 13-100 (435)
41 KOG0126 Predicted RNA-binding 99.0 1.1E-10 2.3E-15 112.7 0.1 77 345-422 32-112 (219)
42 KOG0117 Heterogeneous nuclear 99.0 9.7E-10 2.1E-14 117.4 7.3 81 344-429 255-335 (506)
43 KOG4205 RNA-binding protein mu 99.0 4.4E-10 9.4E-15 117.5 4.3 80 347-428 5-88 (311)
44 KOG0114 Predicted RNA-binding 99.0 3.5E-09 7.6E-14 94.3 9.3 79 346-425 16-95 (124)
45 KOG0117 Heterogeneous nuclear 98.9 2.5E-09 5.3E-14 114.4 9.6 78 346-424 81-163 (506)
46 smart00361 RRM_1 RNA recogniti 98.9 2.9E-09 6.4E-14 87.4 7.6 57 363-419 2-69 (70)
47 KOG0121 Nuclear cap-binding pr 98.9 1.8E-09 3.9E-14 99.3 6.6 77 346-423 34-114 (153)
48 KOG0127 Nucleolar protein fibr 98.9 3E-09 6.5E-14 115.9 8.5 81 348-429 117-200 (678)
49 KOG0147 Transcriptional coacti 98.9 1.3E-09 2.8E-14 118.9 5.8 153 271-429 198-362 (549)
50 KOG0124 Polypyrimidine tract-b 98.9 9.8E-10 2.1E-14 114.9 4.3 72 349-421 114-189 (544)
51 KOG0105 Alternative splicing f 98.8 5.7E-09 1.2E-13 101.2 6.8 79 346-425 4-83 (241)
52 KOG0109 RNA-binding protein LA 98.8 4.4E-09 9.6E-14 107.6 5.8 78 345-427 75-152 (346)
53 KOG0130 RNA-binding protein RB 98.8 4.5E-09 9.8E-14 97.4 5.3 78 350-428 74-155 (170)
54 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.5E-08 3.3E-13 110.9 9.9 75 345-423 172-258 (509)
55 KOG0127 Nucleolar protein fibr 98.8 4.3E-08 9.2E-13 107.1 13.1 80 349-429 293-382 (678)
56 KOG0123 Polyadenylate-binding 98.8 1.5E-08 3.2E-13 108.7 8.3 79 351-431 79-159 (369)
57 KOG0145 RNA-binding protein EL 98.8 2.2E-08 4.8E-13 101.2 8.8 76 349-425 279-358 (360)
58 KOG0132 RNA polymerase II C-te 98.7 1.4E-08 3.1E-13 114.2 7.5 81 346-429 419-499 (894)
59 KOG0145 RNA-binding protein EL 98.7 3E-08 6.5E-13 100.3 8.6 81 346-427 39-123 (360)
60 KOG0109 RNA-binding protein LA 98.7 1.8E-08 3.8E-13 103.3 6.1 75 349-428 3-77 (346)
61 KOG0144 RNA-binding protein CU 98.7 3.4E-08 7.5E-13 105.4 8.0 82 346-428 32-120 (510)
62 KOG4206 Spliceosomal protein s 98.6 6E-08 1.3E-12 96.4 7.8 84 347-431 8-96 (221)
63 KOG0131 Splicing factor 3b, su 98.6 5E-08 1.1E-12 94.4 5.9 83 346-429 94-181 (203)
64 KOG0415 Predicted peptidyl pro 98.6 6E-08 1.3E-12 101.5 6.3 83 343-426 234-320 (479)
65 KOG0146 RNA-binding protein ET 98.6 5.7E-08 1.2E-12 98.6 4.8 84 343-427 280-367 (371)
66 KOG4212 RNA-binding protein hn 98.5 2.8E-07 6.1E-12 98.7 8.3 77 346-423 42-122 (608)
67 KOG0146 RNA-binding protein ET 98.4 3.6E-07 7.8E-12 92.9 7.0 86 346-432 17-108 (371)
68 KOG4208 Nucleolar RNA-binding 98.4 4.9E-07 1.1E-11 89.1 6.9 82 346-428 47-133 (214)
69 KOG4661 Hsp27-ERE-TATA-binding 98.3 5.9E-07 1.3E-11 98.6 6.4 76 348-424 405-484 (940)
70 KOG0110 RNA-binding protein (R 98.3 1.2E-06 2.5E-11 98.6 8.0 73 350-423 517-596 (725)
71 KOG0124 Polypyrimidine tract-b 98.3 1.2E-06 2.6E-11 92.2 7.1 77 348-425 210-290 (544)
72 KOG0110 RNA-binding protein (R 98.3 7.5E-07 1.6E-11 100.1 5.2 80 348-428 613-696 (725)
73 KOG0123 Polyadenylate-binding 98.3 9.2E-07 2E-11 95.0 5.6 80 346-426 268-350 (369)
74 KOG0116 RasGAP SH3 binding pro 98.2 3.5E-06 7.7E-11 91.6 7.9 75 348-424 288-366 (419)
75 KOG4454 RNA binding protein (R 98.1 8.6E-07 1.9E-11 88.2 2.1 80 345-425 6-87 (267)
76 KOG0151 Predicted splicing reg 98.1 7.6E-06 1.6E-10 92.1 8.6 79 345-424 171-256 (877)
77 KOG0106 Alternative splicing f 98.1 2.5E-06 5.5E-11 85.2 4.1 71 349-424 2-72 (216)
78 KOG4212 RNA-binding protein hn 98.0 9.8E-06 2.1E-10 87.2 6.9 73 346-421 534-607 (608)
79 KOG0533 RRM motif-containing p 97.8 4.7E-05 1E-09 77.6 8.2 81 344-425 79-162 (243)
80 KOG2135 Proteins containing th 97.8 5.4E-05 1.2E-09 82.3 8.5 79 345-426 369-447 (526)
81 KOG4660 Protein Mei2, essentia 97.7 2.1E-05 4.6E-10 86.7 3.9 74 343-418 70-143 (549)
82 KOG0226 RNA-binding proteins [ 97.7 3.5E-05 7.6E-10 78.3 4.0 79 346-425 188-270 (290)
83 KOG4209 Splicing factor RNPS1, 97.7 5.1E-05 1.1E-09 76.9 5.2 78 346-425 99-180 (231)
84 KOG1190 Polypyrimidine tract-b 97.6 0.00024 5.2E-09 76.3 8.8 77 348-425 297-373 (492)
85 PF00642 zf-CCCH: Zinc finger 97.5 2.5E-05 5.5E-10 53.5 -0.2 23 192-214 3-26 (27)
86 KOG1457 RNA binding protein (c 97.4 0.00052 1.1E-08 69.0 8.6 86 346-432 32-125 (284)
87 KOG1548 Transcription elongati 97.1 0.0012 2.5E-08 69.9 7.8 77 347-424 133-220 (382)
88 KOG4211 Splicing factor hnRNP- 97.1 0.0017 3.7E-08 71.2 8.5 77 346-425 8-86 (510)
89 smart00356 ZnF_C3H1 zinc finge 97.0 0.00036 7.7E-09 46.8 1.7 22 193-214 5-26 (27)
90 PF04059 RRM_2: RNA recognitio 96.8 0.0055 1.2E-07 54.5 8.2 77 349-426 2-88 (97)
91 KOG1855 Predicted RNA-binding 96.8 0.00092 2E-08 72.3 3.6 125 283-410 160-309 (484)
92 KOG0106 Alternative splicing f 96.8 0.00091 2E-08 67.2 3.0 69 348-421 99-167 (216)
93 KOG0147 Transcriptional coacti 96.7 0.00067 1.5E-08 75.1 2.1 75 348-424 179-257 (549)
94 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0038 8.3E-08 49.3 5.8 52 349-404 2-53 (53)
95 PF11608 Limkain-b1: Limkain b 96.7 0.0064 1.4E-07 52.9 7.0 70 349-425 3-77 (90)
96 KOG0120 Splicing factor U2AF, 96.6 0.0033 7.2E-08 70.0 5.9 80 347-427 288-371 (500)
97 KOG4210 Nuclear localization s 96.5 0.0015 3.3E-08 68.2 2.8 81 346-428 182-267 (285)
98 PF08777 RRM_3: RNA binding mo 96.4 0.0036 7.8E-08 56.2 4.3 56 350-408 3-58 (105)
99 KOG1548 Transcription elongati 96.3 0.025 5.4E-07 60.2 10.4 94 332-426 250-353 (382)
100 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.02 4.3E-07 51.2 8.0 70 349-423 7-90 (100)
101 COG5175 MOT2 Transcriptional r 96.3 0.0098 2.1E-07 62.9 6.9 78 348-425 114-203 (480)
102 KOG4211 Splicing factor hnRNP- 96.2 0.013 2.9E-07 64.5 8.0 75 347-423 102-180 (510)
103 KOG0129 Predicted RNA-binding 96.2 0.019 4.1E-07 63.7 8.8 79 343-423 365-452 (520)
104 KOG0120 Splicing factor U2AF, 96.0 0.015 3.3E-07 64.8 7.6 61 364-424 424-491 (500)
105 KOG0129 Predicted RNA-binding 96.0 0.016 3.5E-07 64.2 7.1 74 346-424 257-340 (520)
106 PF14608 zf-CCCH_2: Zinc finge 95.9 0.0041 8.9E-08 39.5 1.5 19 194-214 1-19 (19)
107 KOG4206 Spliceosomal protein s 95.9 0.032 7E-07 56.2 8.2 78 344-423 142-220 (221)
108 KOG1457 RNA binding protein (c 95.5 0.014 2.9E-07 59.1 4.1 66 346-412 208-273 (284)
109 KOG2185 Predicted RNA-processi 95.5 0.0052 1.1E-07 66.3 1.3 27 191-217 139-165 (486)
110 KOG1995 Conserved Zn-finger pr 95.5 0.016 3.5E-07 61.7 4.8 83 345-428 63-157 (351)
111 smart00517 PolyA C-terminal do 95.4 0.015 3.2E-07 48.1 3.4 51 8-61 11-61 (64)
112 PF00658 PABP: Poly-adenylate 95.4 0.01 2.2E-07 50.1 2.3 50 8-60 22-71 (72)
113 PF08952 DUF1866: Domain of un 95.2 0.065 1.4E-06 51.0 7.4 78 342-425 21-107 (146)
114 KOG2314 Translation initiation 95.0 0.028 6.1E-07 62.9 5.0 76 349-424 59-143 (698)
115 KOG1456 Heterogeneous nuclear 95.0 0.089 1.9E-06 56.6 8.4 79 346-425 285-363 (494)
116 KOG4849 mRNA cleavage factor I 94.9 0.027 5.9E-07 59.9 4.4 74 350-424 82-161 (498)
117 KOG4307 RNA binding protein RB 94.8 0.033 7.1E-07 63.7 4.9 80 346-426 432-515 (944)
118 KOG3152 TBP-binding protein, a 94.4 0.02 4.4E-07 58.7 1.7 68 348-416 74-157 (278)
119 KOG2202 U2 snRNP splicing fact 94.1 0.022 4.8E-07 58.4 1.5 59 364-422 83-145 (260)
120 KOG0112 Large RNA-binding prot 94.0 0.12 2.7E-06 60.6 7.2 84 344-430 451-536 (975)
121 KOG1677 CCCH-type Zn-finger pr 93.8 0.032 7E-07 58.7 2.1 27 188-214 173-200 (332)
122 KOG1190 Polypyrimidine tract-b 93.5 0.16 3.5E-06 55.2 6.6 79 344-423 410-489 (492)
123 KOG1996 mRNA splicing factor [ 92.8 0.25 5.4E-06 51.9 6.5 61 363-423 300-365 (378)
124 KOG2891 Surface glycoprotein [ 92.7 0.1 2.2E-06 54.4 3.5 38 346-383 147-195 (445)
125 PF10309 DUF2414: Protein of u 90.7 1.2 2.5E-05 36.8 6.9 55 348-407 5-62 (62)
126 PF04847 Calcipressin: Calcipr 90.1 0.91 2E-05 44.9 7.0 62 362-425 8-71 (184)
127 KOG1456 Heterogeneous nuclear 89.9 1 2.3E-05 48.8 7.7 77 348-425 120-199 (494)
128 KOG4676 Splicing factor, argin 89.5 0.61 1.3E-05 50.7 5.7 75 349-425 8-89 (479)
129 PF15023 DUF4523: Protein of u 88.9 1.6 3.5E-05 41.8 7.4 75 344-422 82-159 (166)
130 KOG0112 Large RNA-binding prot 88.8 0.12 2.6E-06 60.7 -0.2 79 345-424 369-450 (975)
131 KOG4307 RNA binding protein RB 88.6 1.4 3E-05 51.0 7.9 73 348-421 867-943 (944)
132 KOG4285 Mitotic phosphoprotein 88.4 1 2.3E-05 47.5 6.3 75 349-428 198-273 (350)
133 KOG1039 Predicted E3 ubiquitin 88.2 0.17 3.6E-06 54.5 0.5 22 193-214 9-30 (344)
134 KOG2193 IGF-II mRNA-binding pr 88.0 0.5 1.1E-05 51.8 3.8 74 349-429 2-80 (584)
135 KOG0105 Alternative splicing f 87.5 2.6 5.6E-05 42.1 8.0 68 350-421 117-186 (241)
136 KOG1595 CCCH-type Zn-finger pr 86.9 0.41 8.9E-06 53.7 2.5 35 180-214 224-258 (528)
137 KOG0128 RNA-binding protein SA 86.7 0.092 2E-06 61.3 -2.7 72 349-421 668-743 (881)
138 KOG0128 RNA-binding protein SA 86.5 0.34 7.3E-06 56.9 1.6 76 348-424 736-814 (881)
139 KOG2068 MOT2 transcription fac 86.4 0.27 5.9E-06 52.3 0.8 78 349-426 78-164 (327)
140 KOG1365 RNA-binding protein Fu 86.0 1.1 2.4E-05 48.7 5.1 71 350-422 163-240 (508)
141 KOG2416 Acinus (induces apopto 84.4 1.2 2.6E-05 50.8 4.5 77 345-424 441-521 (718)
142 KOG1365 RNA-binding protein Fu 84.1 1.1 2.5E-05 48.6 4.1 75 348-423 280-360 (508)
143 PF12872 OST-HTH: OST-HTH/LOTU 80.8 2 4.4E-05 35.0 3.6 69 243-322 2-73 (74)
144 PF10650 zf-C3H1: Putative zin 80.6 0.88 1.9E-05 30.5 1.1 19 194-213 2-21 (23)
145 KOG0115 RNA-binding protein p5 80.1 1.5 3.3E-05 45.4 3.1 74 349-423 32-112 (275)
146 KOG2253 U1 snRNP complex, subu 79.1 2 4.3E-05 49.5 4.0 100 313-422 9-108 (668)
147 PF08675 RNA_bind: RNA binding 77.6 8.8 0.00019 33.7 6.6 57 347-409 8-64 (87)
148 KOG2494 C3H1-type Zn-finger pr 77.0 0.84 1.8E-05 48.6 0.3 23 192-214 37-60 (331)
149 PF03880 DbpA: DbpA RNA bindin 75.6 6.9 0.00015 32.6 5.4 59 359-422 11-74 (74)
150 KOG1763 Uncharacterized conser 75.2 1.1 2.4E-05 47.1 0.6 22 193-214 93-114 (343)
151 COG5084 YTH1 Cleavage and poly 73.2 1.7 3.6E-05 45.9 1.3 24 192-215 134-158 (285)
152 KOG1040 Polyadenylation factor 72.8 1.8 4E-05 46.4 1.5 23 192-214 105-128 (325)
153 KOG1492 C3H1-type Zn-finger pr 70.4 1.8 3.9E-05 44.0 0.8 23 192-214 206-229 (377)
154 KOG4210 Nuclear localization s 63.9 4 8.6E-05 43.0 1.8 79 347-426 87-169 (285)
155 KOG1677 CCCH-type Zn-finger pr 63.9 3.3 7.1E-05 43.7 1.2 27 188-214 128-156 (332)
156 KOG1040 Polyadenylation factor 61.5 3.5 7.5E-05 44.3 0.8 26 189-214 74-99 (325)
157 PF03467 Smg4_UPF3: Smg-4/UPF3 54.1 13 0.00028 36.4 3.4 66 348-414 7-82 (176)
158 KOG4574 RNA-binding protein (c 50.3 12 0.00026 44.6 2.8 76 346-424 296-373 (1007)
159 KOG2591 c-Mpl binding protein, 50.0 31 0.00067 39.6 5.8 67 348-418 174-245 (684)
160 COG5152 Uncharacterized conser 47.8 7.4 0.00016 39.2 0.6 25 190-214 139-164 (259)
161 COG5084 YTH1 Cleavage and poly 46.1 10 0.00022 40.1 1.4 25 190-214 102-126 (285)
162 KOG2494 C3H1-type Zn-finger pr 43.3 11 0.00024 40.4 1.1 30 184-214 63-92 (331)
163 PF07576 BRAP2: BRCA1-associat 41.3 1.6E+02 0.0035 26.8 8.2 65 349-414 14-81 (110)
164 KOG1492 C3H1-type Zn-finger pr 40.7 10 0.00022 38.7 0.4 23 192-215 261-283 (377)
165 COG5063 CTH1 CCCH-type Zn-fing 39.7 15 0.00033 39.2 1.4 26 189-214 271-297 (351)
166 KOG4454 RNA binding protein (R 38.2 6.7 0.00015 40.1 -1.4 64 348-412 80-150 (267)
167 PF11767 SET_assoc: Histone ly 36.0 2.2E+02 0.0047 23.8 7.4 56 359-419 10-65 (66)
168 PF15513 DUF4651: Domain of un 35.8 54 0.0012 27.3 3.7 19 364-382 9-27 (62)
169 COG5252 Uncharacterized conser 34.7 14 0.00031 38.0 0.3 22 193-214 86-107 (299)
170 KOG2318 Uncharacterized conser 33.2 1.3E+02 0.0029 34.8 7.5 75 344-419 170-300 (650)
171 KOG2333 Uncharacterized conser 25.7 45 0.00097 38.0 2.2 23 194-216 116-139 (614)
172 KOG4019 Calcineurin-mediated s 25.7 40 0.00087 33.7 1.6 76 350-427 12-92 (193)
173 KOG2202 U2 snRNP splicing fact 25.0 34 0.00073 35.7 1.1 27 188-214 148-174 (260)
174 KOG1039 Predicted E3 ubiquitin 23.7 37 0.00079 37.0 1.1 26 189-214 246-273 (344)
175 PF07292 NID: Nmi/IFP 35 domai 20.5 1.3E+02 0.0029 26.5 3.7 34 390-423 1-37 (88)
176 KOG1813 Predicted E3 ubiquitin 20.4 37 0.0008 36.2 0.3 26 189-214 183-209 (313)
177 PF02714 DUF221: Domain of unk 20.3 86 0.0019 32.7 3.0 36 390-427 1-36 (325)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=5.2e-15 Score=138.52 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|+|+
T Consensus 31 ~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345679999999 899999999999999999999999986 689999999999999999999999999999999999
Q ss_pred eccccch
Q 008148 421 PYREKSR 427 (576)
Q Consensus 421 ~Ak~K~k 427 (576)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9987655
No 2
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.1e-15 Score=161.32 Aligned_cols=154 Identities=21% Similarity=0.321 Sum_probs=115.5
Q ss_pred hHHhhccchhcccccccccccccCCchHHHHHHHhhhccccccCCCCcchhhhccccc-cccccCCCCCCCCCCCCCCcE
Q 008148 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVP-KYLEYSGEKSDPGGIVAGSRQ 350 (576)
Q Consensus 272 y~~k~g~~lq~~g~~~esqR~gkaGys~~kll~rLkN~i~lidr~~GQ~~vvl~ed~~-K~~~~r~~r~d~~~~~~~~rt 350 (576)
+|++||.+.+..-++.++++ ..+||+|+++-++. ..++.|.-.|.+-.+. +..-+ +..-..+++. .....+|
T Consensus 54 lFe~yg~V~einl~kDk~t~-~s~gcCFv~~~trk-~a~~a~~Alhn~ktlp-G~~~pvqvk~Ad~E~e----r~~~e~K 126 (510)
T KOG0144|consen 54 LFEKYGNVYEINLIKDKSTG-QSKGCCFVKYYTRK-EADEAINALHNQKTLP-GMHHPVQVKYADGERE----RIVEERK 126 (510)
T ss_pred HHHHhCceeEEEeecccccC-cccceEEEEeccHH-HHHHHHHHhhcccccC-CCCcceeecccchhhh----ccccchh
Confidence 59999999998877776665 45689998887766 5555555555544321 21111 1111122221 1256789
Q ss_pred EEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCee-E--cCeEEEEeeccc
Q 008148 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-V--CGARVLVKPYRE 424 (576)
Q Consensus 351 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~-I--~Gr~I~Vk~Ak~ 424 (576)
||||-| +..+||.+|+++|++||.|++|+|.+| .+||||||+|...|.|..|++.||+.. + |...+.|+||.+
T Consensus 127 LFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 127 LFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred hhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEeccc
Confidence 999999 889999999999999999999999996 899999999999999999999999743 4 558999999998
Q ss_pred cchhhhhHh
Q 008148 425 KSRLVDRKY 433 (576)
Q Consensus 425 K~k~~~~~~ 433 (576)
+.....++.
T Consensus 206 qkdk~~~~l 214 (510)
T KOG0144|consen 206 QKDKDGKRL 214 (510)
T ss_pred CCCchHHHH
Confidence 776655543
No 3
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=150.63 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhC-CCeeEcCeEEEEeeccc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYRE 424 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~l-ng~~I~Gr~I~Vk~Ak~ 424 (576)
...++||||+| ...++|.+|+++|.+||+|+.|++.. .+++|||+|.+.++|+.|.++. |...|+|.+|+|.|..+
T Consensus 226 ~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45689999999 67999999999999999999999988 7889999999999999999986 78889999999999887
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.49 E-value=9e-14 Score=144.59 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
...+|||+|| ++++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.|||..|+||+|+|.++
T Consensus 268 ~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3458999999 889999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred cccch
Q 008148 423 REKSR 427 (576)
Q Consensus 423 k~K~k 427 (576)
..|.+
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 87764
No 5
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4.4e-14 Score=140.18 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
....|||||+| .|+++.++|++||++||+|++..|+.| ++||||||||.+.++|.+|++. ...+|+||+..|+.
T Consensus 10 T~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 10 TTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred ceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34679999999 999999999999999999999999997 8999999999999999999999 67789999999988
Q ss_pred ccc
Q 008148 422 YRE 424 (576)
Q Consensus 422 Ak~ 424 (576)
|.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 754
No 6
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.8e-14 Score=136.58 Aligned_cols=81 Identities=26% Similarity=0.390 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...+|||||+| ..++||.-|...|-.||.|.+|.||.| ++||||||+|+..|+|.+|++.||..+++||.|+|+.
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34689999999 778999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred ccccch
Q 008148 422 YREKSR 427 (576)
Q Consensus 422 Ak~K~k 427 (576)
|+|..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 987543
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=4e-13 Score=139.74 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
..+|||++| +.++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 3 ~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 579999999 899999999999999999999999986 589999999999999999999999999999999999988
Q ss_pred ccch
Q 008148 424 EKSR 427 (576)
Q Consensus 424 ~K~k 427 (576)
++..
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7653
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=4.5e-13 Score=106.68 Aligned_cols=67 Identities=21% Similarity=0.474 Sum_probs=63.8
Q ss_pred EEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEE
Q 008148 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (576)
Q Consensus 351 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~ 418 (576)
|||+|| +..+|+++|+++|++||+|..+.++.+ +.+|||||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 899999999999999999999999883 7799999999999999999999999999999885
No 9
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=3.3e-13 Score=139.03 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d--ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
....++|+|.|| ++.+.|-||+..|++||+|.+|.|+.. .+||||||||++.++|++|-+++++..|.||+|+|+.|
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345689999999 999999999999999999999999995 68999999999999999999999999999999999999
Q ss_pred ccc
Q 008148 423 REK 425 (576)
Q Consensus 423 k~K 425 (576)
..|
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 887
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.42 E-value=8.8e-13 Score=139.70 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcC--eEEEEe
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVK 420 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~G--r~I~Vk 420 (576)
...+|||++| ++.+||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||+..+.| +.|.|+
T Consensus 192 ~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 4568999999 899999999999999999999999986 568999999999999999999999999977 789999
Q ss_pred eccccchhh
Q 008148 421 PYREKSRLV 429 (576)
Q Consensus 421 ~Ak~K~k~~ 429 (576)
+++++.+..
T Consensus 271 ~a~~~~~~~ 279 (346)
T TIGR01659 271 LAEEHGKAK 279 (346)
T ss_pred ECCcccccc
Confidence 998876543
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.6e-13 Score=135.17 Aligned_cols=149 Identities=19% Similarity=0.256 Sum_probs=107.4
Q ss_pred hHHhhccchhcccccccccccccCCchHHHHHHHhhhccccccCCCCcchhhhcccccccccc-C--CCCCCC-------
Q 008148 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEY-S--GEKSDP------- 341 (576)
Q Consensus 272 y~~k~g~~lq~~g~~~esqR~gkaGys~~kll~rLkN~i~lidr~~GQ~~vvl~ed~~K~~~~-r--~~r~d~------- 341 (576)
-|.+||++-.+.- ..+-.-.+..||+|..+-.+. +.-+.|+...||= |+....+.... | .+++..
T Consensus 82 aF~pFGevS~akv-irD~~T~KsKGYgFVSf~~k~-dAEnAI~~MnGqW---lG~R~IRTNWATRKp~e~n~~~ltfdeV 156 (321)
T KOG0148|consen 82 AFAPFGEVSDAKV-IRDMNTGKSKGYGFVSFPNKE-DAENAIQQMNGQW---LGRRTIRTNWATRKPSEMNGKPLTFDEV 156 (321)
T ss_pred HhccccccccceE-eecccCCcccceeEEeccchH-HHHHHHHHhCCee---eccceeeccccccCccccCCCCccHHHH
Confidence 4778888866543 222233344599988887766 5556666655543 11111111000 1 111110
Q ss_pred -CCCCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 342 -GGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 342 -~~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
....+..++||||++ ..-+||+++|+.|+.||+|.+|||-+ -+||+||.|++.|.|.+||..||+..|.|..|++.
T Consensus 157 ~NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 157 YNQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred hccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 234577889999999 56799999999999999999999998 78999999999999999999999999999999999
Q ss_pred eccccchh
Q 008148 421 PYREKSRL 428 (576)
Q Consensus 421 ~Ak~K~k~ 428 (576)
|-++-...
T Consensus 234 WGKe~~~~ 241 (321)
T KOG0148|consen 234 WGKEGDDG 241 (321)
T ss_pred ccccCCCC
Confidence 98876543
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.39 E-value=5.2e-13 Score=148.46 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
....+|||+|| ++++|+++|+++|++||.|++|+|+.| ++||||||+|.+.++|.+|+..||+..|+|++|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44678999999 899999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred cccchhhh
Q 008148 423 REKSRLVD 430 (576)
Q Consensus 423 k~K~k~~~ 430 (576)
..|.....
T Consensus 362 ~~k~~~~~ 369 (562)
T TIGR01628 362 QRKEQRRA 369 (562)
T ss_pred cCcHHHHH
Confidence 98766543
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=1.2e-12 Score=138.76 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.||+..|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 356789999999 899999999999999999999999886 678999999999999999999999999999999999
Q ss_pred eccccc
Q 008148 421 PYREKS 426 (576)
Q Consensus 421 ~Ak~K~ 426 (576)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.38 E-value=2.5e-12 Score=144.36 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
..++|||++| +.++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999999 899999999999999999999999986 68999999999999999999999999999999999998
Q ss_pred cccc
Q 008148 423 REKS 426 (576)
Q Consensus 423 k~K~ 426 (576)
..+.
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8643
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.6e-12 Score=132.05 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCC-CCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ-KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dk-sRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
.++|||+|| ++.+||++|+++|+.||+|++|+|+.++ .+|||||+|.++++|+.|+. ||+..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 579999999 8999999999999999999999999974 78999999999999999995 899999999999999764
No 16
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=6.5e-12 Score=128.29 Aligned_cols=89 Identities=18% Similarity=0.401 Sum_probs=81.3
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeE
Q 008148 337 EKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (576)
Q Consensus 337 ~r~d~~~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I 412 (576)
..+|....+.+.+||||+.| +++++|..|+.+|+.||+|..|+|++| +++|||||+|+++.+...|++..++..|
T Consensus 90 P~~dp~a~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCcccCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 34566678889999999999 999999999999999999999999996 8999999999999999999999999999
Q ss_pred cCeEEEEeeccccc
Q 008148 413 CGARVLVKPYREKS 426 (576)
Q Consensus 413 ~Gr~I~Vk~Ak~K~ 426 (576)
+|++|.|..-..+.
T Consensus 169 dgrri~VDvERgRT 182 (335)
T KOG0113|consen 169 DGRRILVDVERGRT 182 (335)
T ss_pred cCcEEEEEeccccc
Confidence 99999998765543
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.29 E-value=8.7e-12 Score=138.73 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEc----CeEE
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARV 417 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~----Gr~I 417 (576)
....++|||++| +.++|+++|+++|++||+|++|.|+.+ +++|||||+|.+.++|.+|++.+++..|. |+.+
T Consensus 175 ~~~~~~l~V~nl-~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNL-DPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 345678999999 889999999999999999999999885 67999999999999999999999999999 9999
Q ss_pred EEeeccccchh
Q 008148 418 LVKPYREKSRL 428 (576)
Q Consensus 418 ~Vk~Ak~K~k~ 428 (576)
.|.++..+.+.
T Consensus 254 ~v~~a~~k~er 264 (562)
T TIGR01628 254 YVGRAQKRAER 264 (562)
T ss_pred EeecccChhhh
Confidence 99999887654
No 18
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=7.9e-12 Score=134.14 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCH--HHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFA--ETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~--e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
...-+|||||| .+.+|++||+..|++||.|.+|.|++...||||||+|... ..+.+|++.||+..+.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34569999999 9999999999999999999999999877799999999987 78999999999999999999999998
Q ss_pred cc
Q 008148 424 EK 425 (576)
Q Consensus 424 ~K 425 (576)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 73
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=99.25 E-value=4.4e-11 Score=93.26 Aligned_cols=70 Identities=29% Similarity=0.503 Sum_probs=64.9
Q ss_pred EEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 350 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d--ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
+|||++| +..+++++|+++|.+||+|..+++..+ ..+|+|||+|.+.+.|++|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 888999999999999999999999884 367999999999999999999999999999999874
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.25 E-value=2.9e-11 Score=97.66 Aligned_cols=67 Identities=36% Similarity=0.568 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEE
Q 008148 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (576)
Q Consensus 351 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~ 418 (576)
|||+|| ++.+++++|+++|+.||.|.+|++..+ +.+|+|||+|.+.++|++|++..++..|+|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 889999999999999999999999985 3589999999999999999999999999999885
No 21
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.5e-11 Score=117.78 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccccc
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K~ 426 (576)
..++|||||| ...+++.||...|+.||+|..|.|.. ...|||||+|+++.+|+.|+..|++..|||.+|.|+...-+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4679999999 89999999999999999999999977 689999999999999999999999999999999998876554
Q ss_pred h
Q 008148 427 R 427 (576)
Q Consensus 427 k 427 (576)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=2.2e-11 Score=136.86 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...++||||+| +++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+||+|+|.+
T Consensus 105 ~~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34579999999 999999999999999999999999886 6899999999999999999999999999999999986
Q ss_pred cc
Q 008148 422 YR 423 (576)
Q Consensus 422 Ak 423 (576)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 54
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=4.1e-11 Score=120.43 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d-ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
...+|||+|| ++.+||++|+++|+.||+|.+|+|++| +.+|||||+|.+++.|+.|+ .|++..|.++.|.|.++..
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4579999999 999999999999999999999999997 66789999999999999999 4699999999999988654
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.9e-11 Score=121.38 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
..--+|||.| ...++.|+||+.|.+||+|.+++|++| ++||||||.|-+.++|+.||..||+..|++|.|+-+||
T Consensus 61 ~hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 61 QHFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred cceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 3458999999 889999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cccch
Q 008148 423 REKSR 427 (576)
Q Consensus 423 k~K~k 427 (576)
..|..
T Consensus 140 TRKp~ 144 (321)
T KOG0148|consen 140 TRKPS 144 (321)
T ss_pred ccCcc
Confidence 88873
No 25
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.19 E-value=1.9e-11 Score=127.71 Aligned_cols=152 Identities=23% Similarity=0.327 Sum_probs=104.1
Q ss_pred hHHhhccchhcccccccccccccCCchHHHHHHHhhhccccccCCCCcchhhhccccccccc-cCCCCCCCCCCCCCCcE
Q 008148 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLE-YSGEKSDPGGIVAGSRQ 350 (576)
Q Consensus 272 y~~k~g~~lq~~g~~~esqR~gkaGys~~kll~rLkN~i~lidr~~GQ~~vvl~ed~~K~~~-~r~~r~d~~~~~~~~rt 350 (576)
||..||+++++-....... .-..||+|..+...---+-.+..|.|--. +...+-... .|.+.... ......++
T Consensus 26 yf~~~Gev~d~~vm~d~~t-~rsrgFgfv~f~~~~~v~~vl~~~~h~~d----gr~ve~k~av~r~~~~~~-~~~~~tkk 99 (311)
T KOG4205|consen 26 YFSQFGEVTDCVVMRDPST-GRSRGFGFVTFATPEGVDAVLNARTHKLD----GRSVEPKRAVSREDQTKV-GRHLRTKK 99 (311)
T ss_pred HhcccCceeeEEEeccCCC-CCcccccceecCCCcchheeecccccccC----CccccceeccCccccccc-ccccceeE
Confidence 7788999888754443332 22347887766532211112333332211 110110000 11111111 11225779
Q ss_pred EEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccccc
Q 008148 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (576)
Q Consensus 351 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K~ 426 (576)
||||+| +..++|+++++||.+||.|.++-+++| +.||||||+|..++.+++++.. ..|.|+|+.|.|+.|.+|.
T Consensus 100 iFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 100 IFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred EEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchh
Confidence 999999 899999999999999999999999997 7899999999999999999998 8999999999999999998
Q ss_pred hhhhh
Q 008148 427 RLVDR 431 (576)
Q Consensus 427 k~~~~ 431 (576)
.....
T Consensus 178 ~~~~~ 182 (311)
T KOG4205|consen 178 VMQST 182 (311)
T ss_pred hcccc
Confidence 76543
No 26
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.18 E-value=9.5e-11 Score=112.10 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
..+|||+|| ++.+|+++|+++|.+||+|..|+|+.+ +.||||||+|.+.++|..|+..+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999 899999999999999999999999886 789999999999999999999999999999999999966
Q ss_pred c
Q 008148 424 E 424 (576)
Q Consensus 424 ~ 424 (576)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.17 E-value=1e-10 Score=126.48 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
+..++|||+|| +..+|+++|+++|++||.|..|+|+.+ +++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 45789999999 889999999999999999999999975 5799999999999999999999999999999999999
Q ss_pred ccc
Q 008148 422 YRE 424 (576)
Q Consensus 422 Ak~ 424 (576)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 874
No 28
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.3e-10 Score=90.20 Aligned_cols=67 Identities=28% Similarity=0.406 Sum_probs=61.5
Q ss_pred EcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 353 LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 353 Vg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
|++| ++.+++++|+++|++||+|..+.+..+ +++|+|||+|.+.++|.+|++.+++..+.|++|.|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 888999999999999999999999885 348999999999999999999999999999999874
No 29
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=8.1e-11 Score=117.71 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
...+|-|.|| +.+++|++|+++|..||.|..|.|.+| .+||||||+|.+.++|.+||+.|||+-+++-.|+|.|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4668999999 899999999999999999999999997 78999999999999999999999999999999999999
Q ss_pred ccc
Q 008148 423 REK 425 (576)
Q Consensus 423 k~K 425 (576)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.16 E-value=1.2e-10 Score=130.56 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcC--CCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqF--G~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
...++|||+|| ++.+||++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34679999999 8999999999999999 999999885 5799999999999999999999999999999999998
Q ss_pred ccchh
Q 008148 424 EKSRL 428 (576)
Q Consensus 424 ~K~k~ 428 (576)
++.+.
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 86543
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.16 E-value=1.3e-10 Score=127.82 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCC-CCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
.+...+|||+|| ++ .+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|..|+..||++.|.|+.|+|.+++
T Consensus 272 ~~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 272 GGPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 356789999999 65 6999999999999999999999986 58999999999999999999999999999999999886
Q ss_pred ccc
Q 008148 424 EKS 426 (576)
Q Consensus 424 ~K~ 426 (576)
.+.
T Consensus 350 ~~~ 352 (481)
T TIGR01649 350 QQN 352 (481)
T ss_pred ccc
Confidence 543
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=1.7e-10 Score=126.25 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...++|||+|| ++.+|+++|+++|++||.|..+.|+.+ +++|||||+|.+.++|..|++.||+..|.|+.|.|.+
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34579999999 899999999999999999999999885 5899999999999999999999999999999999999
Q ss_pred cccc
Q 008148 422 YREK 425 (576)
Q Consensus 422 Ak~K 425 (576)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8654
No 33
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.15 E-value=5e-11 Score=116.81 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
....|-|-|| .+.+|.++|+.+|++||.|-+|.|+.| ++||||||-|.+..+|+.|+++|++..|+|+.|.|..|
T Consensus 12 gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3468999999 899999999999999999999999998 78999999999999999999999999999999999877
Q ss_pred cc
Q 008148 423 RE 424 (576)
Q Consensus 423 k~ 424 (576)
+-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 53
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=1.5e-10 Score=127.30 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHh--CCCeeEcCeEEEEeeccc
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK--GNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~--lng~~I~Gr~I~Vk~Ak~ 424 (576)
++++|||++| ++++||++|+++|++||+|.+|.|+. +||||||+|.+.++|++|++. +++..|.|+.|.|.++..
T Consensus 1 ps~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 4689999999 89999999999999999999999997 789999999999999999996 478999999999999876
Q ss_pred c
Q 008148 425 K 425 (576)
Q Consensus 425 K 425 (576)
+
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 5
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.12 E-value=1.5e-10 Score=129.74 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEc-CeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~-Gr~I~Vk~ 421 (576)
...++|||++| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34579999999 899999999999999999999999986 78999999999999999999999998885 78888876
Q ss_pred ccc
Q 008148 422 YRE 424 (576)
Q Consensus 422 Ak~ 424 (576)
+..
T Consensus 135 S~~ 137 (578)
T TIGR01648 135 SVD 137 (578)
T ss_pred ccc
Confidence 654
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.11 E-value=3.2e-10 Score=122.56 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...++|||++| ++.+|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|.+|+. |++..|.|+.|.|..
T Consensus 87 ~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 34679999999 899999999999999999999999986 579999999999999999997 699999999999988
Q ss_pred cccc
Q 008148 422 YREK 425 (576)
Q Consensus 422 Ak~K 425 (576)
....
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 6543
No 37
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=3.1e-10 Score=88.71 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 366 VSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 366 Lr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
|+++|++||+|.+|.+..+. +++|||+|.+.++|+.|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998743 599999999999999999999999999999999875
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.10 E-value=6.1e-10 Score=87.22 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCC---CCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ---KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 350 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dk---sRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
+|||++| +..+++++|+++|..||+|..+.+..+. .+|+|||+|.+.+.|..|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999 8889999999999999999999998853 489999999999999999999999999999999864
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.08 E-value=1.5e-10 Score=111.69 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
...|||||+| +..++++.|+++|-|.|+|++++||+| .++|||||+|.++|+|+-|+..||...+.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4569999999 999999999999999999999999997 68999999999999999999999999999999999988
Q ss_pred cc
Q 008148 423 RE 424 (576)
Q Consensus 423 k~ 424 (576)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 73
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.97 E-value=1.7e-09 Score=117.61 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=76.2
Q ss_pred CCCCC-cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEE
Q 008148 344 IVAGS-RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (576)
Q Consensus 344 ~~~~~-rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~ 418 (576)
..+.. +.||||++ +++++|++|.++|++.|+|.++++++| +.|||||++|.+.++|..|++.+|+..+.||+|+
T Consensus 13 ~~~~~~~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~ 91 (435)
T KOG0108|consen 13 NSPGLSSSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLR 91 (435)
T ss_pred cCcccccceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEE
Confidence 33444 89999999 999999999999999999999999997 7899999999999999999999999999999999
Q ss_pred Eeeccccch
Q 008148 419 VKPYREKSR 427 (576)
Q Consensus 419 Vk~Ak~K~k 427 (576)
|.++.....
T Consensus 92 v~~~~~~~~ 100 (435)
T KOG0108|consen 92 VNYASNRKN 100 (435)
T ss_pred eecccccch
Confidence 999876543
No 41
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.1e-10 Score=112.66 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
-..+..||||+| ++++||.||-..||+||+|++|.+++| +++||||..|++..+--.|+..+||..|.||.|+|.
T Consensus 32 YkdsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 355679999999 999999999999999999999999997 899999999999999999999999999999999996
Q ss_pred ec
Q 008148 421 PY 422 (576)
Q Consensus 421 ~A 422 (576)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 54
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=9.7e-10 Score=117.42 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
.....+-|||.|| ..++|||.|++.|++||.|+.|+.++| ||||-|.+.++|.+|++.||+..|+|..|.|..|+
T Consensus 255 ~ms~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 255 TMSKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hhhheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4455679999999 889999999999999999999999865 99999999999999999999999999999999999
Q ss_pred ccchhh
Q 008148 424 EKSRLV 429 (576)
Q Consensus 424 ~K~k~~ 429 (576)
|..+..
T Consensus 330 P~~k~k 335 (506)
T KOG0117|consen 330 PVDKKK 335 (506)
T ss_pred Chhhhc
Confidence 865543
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.95 E-value=4.4e-10 Score=117.53 Aligned_cols=80 Identities=30% Similarity=0.414 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
...+||||+| +|+++++.|++||++||+|.+|.+++| ++|||+||+|++++.+.+++.. ..|.|+|+.|.++.+
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 5679999999 999999999999999999999999997 8999999999999999999988 789999999999999
Q ss_pred cccchh
Q 008148 423 REKSRL 428 (576)
Q Consensus 423 k~K~k~ 428 (576)
.++...
T Consensus 83 v~r~~~ 88 (311)
T KOG4205|consen 83 VSREDQ 88 (311)
T ss_pred cCcccc
Confidence 988753
No 44
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=3.5e-09 Score=94.28 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d-ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
...+-|||.|| ++.+|.|++-++|++||.|..|||=.. .-||-|||.|++..+|++|++.|++..++++-+.|-.+++
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34688999999 999999999999999999999999664 6799999999999999999999999999999999988775
Q ss_pred c
Q 008148 425 K 425 (576)
Q Consensus 425 K 425 (576)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.5e-09 Score=114.40 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeE-cCeEEEEe
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV-CGARVLVK 420 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I-~Gr~I~Vk 420 (576)
+..+.||||.| +.++.|++|.-+|++-|+|-++|||+| .+||||||||.+.+.|+.|++.+|+++| .|+.|.|+
T Consensus 81 ~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 55679999999 899999999999999999999999997 7899999999999999999999999988 68888887
Q ss_pred eccc
Q 008148 421 PYRE 424 (576)
Q Consensus 421 ~Ak~ 424 (576)
....
T Consensus 160 ~Sva 163 (506)
T KOG0117|consen 160 VSVA 163 (506)
T ss_pred Eeee
Confidence 6654
No 46
>smart00361 RRM_1 RNA recognition motif.
Probab=98.93 E-value=2.9e-09 Score=87.43 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=51.3
Q ss_pred HHHHHHHHh----cCCCeeEEE-eecC------CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEE
Q 008148 363 EQDVSNYFS----KFGPVQDVR-IPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (576)
Q Consensus 363 EedLr~~Fs----qFG~V~~Vr-I~~d------ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~V 419 (576)
+++|+++|+ +||+|.+|. |+.+ .+||||||+|.+.++|.+|+..||+..+.|+.|.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 5443 47999999999999999999999999999999986
No 47
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=1.8e-09 Score=99.26 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
..+.||||||| ++.+|||+|.++|++.|+|..|-|=.| ..-||+||.|-..++|..|+.-+++..++.+.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45789999999 999999999999999999999977666 4679999999999999999999999999999999987
Q ss_pred cc
Q 008148 422 YR 423 (576)
Q Consensus 422 Ak 423 (576)
-.
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 43
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3e-09 Score=115.92 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=75.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
.-+|.|.|| +|.+.+.+|+.+|++||.|.+|.||+. +-.|||||+|....+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 458999999 999999999999999999999999983 5569999999999999999999999999999999999999
Q ss_pred cchhh
Q 008148 425 KSRLV 429 (576)
Q Consensus 425 K~k~~ 429 (576)
|....
T Consensus 196 Kd~ye 200 (678)
T KOG0127|consen 196 KDTYE 200 (678)
T ss_pred ccccc
Confidence 86544
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.90 E-value=1.3e-09 Score=118.89 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=103.1
Q ss_pred hhHHhhccchhccccccc-ccccccCCch------HHHHHHHhhhccccccCCCCcchhhhcccccccccc-CCCCCCCC
Q 008148 271 MYYEKYGKTLQAEGYLTE-SQRHGKAGYS------LTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEY-SGEKSDPG 342 (576)
Q Consensus 271 ~y~~k~g~~lq~~g~~~e-sqR~gkaGys------~~kll~rLkN~i~lidr~~GQ~~vvl~ed~~K~~~~-r~~r~d~~ 342 (576)
.+|...|++.-+.-+... ++|.++.+|- -+-+..-|. -.|..|+..++...+++|.... -..-.+.+
T Consensus 198 efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLs-----Gqrllg~pv~vq~sEaeknr~a~~s~a~~~k 272 (549)
T KOG0147|consen 198 EFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALS-----GQRLLGVPVIVQLSEAEKNRAANASPALQGK 272 (549)
T ss_pred HHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhc-----CCcccCceeEecccHHHHHHHHhcccccccc
Confidence 356667877665543322 3443333442 011111121 1344455555556666654321 11111112
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEE
Q 008148 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (576)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~ 418 (576)
...-+-+.+|||+| .+.+||++|+.+|+.||+|+.|.+++| +++|||||+|.+.++|++|+++||+.+|-|+.|+
T Consensus 273 ~~~~p~~rl~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 273 GFTGPMRRLYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred ccccchhhhhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEE
Confidence 22222333999999 999999999999999999999999986 7999999999999999999999999999999999
Q ss_pred Eeeccccchhh
Q 008148 419 VKPYREKSRLV 429 (576)
Q Consensus 419 Vk~Ak~K~k~~ 429 (576)
|....++....
T Consensus 352 V~~v~~r~~~~ 362 (549)
T KOG0147|consen 352 VSVVTERVDTK 362 (549)
T ss_pred EEEeeeecccc
Confidence 99887776544
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=9.8e-10 Score=114.90 Aligned_cols=72 Identities=19% Similarity=0.423 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
++||||.+ .+++.|+.||..|..||+|.+|.+..| +++|||||+|+-+|.|..|++.||+..++||.|+|.+
T Consensus 114 cRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred Hheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 57999999 999999999999999999999999886 8999999999999999999999999999999999984
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=5.7e-09 Score=101.16 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d-ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
...++|||||| +.++.|.+|.++|.+||.|.+|.+-.- ....||||.|+++.+|+.|+..-++..++|.+|+|.++..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 45679999999 889999999999999999999987432 3467999999999999999999999999999999998765
Q ss_pred c
Q 008148 425 K 425 (576)
Q Consensus 425 K 425 (576)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 3
No 52
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.82 E-value=4.4e-09 Score=107.61 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
...+.||+|||+ ..++|..+||..|.+||+|.+|.|+ |+|+||.|+-.++|..|+..||+..++|++++|.....
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 456789999999 8999999999999999999999996 56999999999999999999999999999999998876
Q ss_pred cch
Q 008148 425 KSR 427 (576)
Q Consensus 425 K~k 427 (576)
|-.
T Consensus 150 rlr 152 (346)
T KOG0109|consen 150 RLR 152 (346)
T ss_pred ccc
Confidence 543
No 53
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=4.5e-09 Score=97.42 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=72.4
Q ss_pred EEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecccc
Q 008148 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (576)
Q Consensus 350 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K 425 (576)
-|||+++ ....||++|.+.|..||+|..|.+-.| .-+|||.|.|++.+.|++|++.+|+..|-|..|.|.|+--+
T Consensus 74 Ii~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 74 IIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 7899999 889999999999999999999999887 46999999999999999999999999999999999998766
Q ss_pred chh
Q 008148 426 SRL 428 (576)
Q Consensus 426 ~k~ 428 (576)
+..
T Consensus 153 gp~ 155 (170)
T KOG0130|consen 153 GPE 155 (170)
T ss_pred CCc
Confidence 553
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.80 E-value=1.5e-08 Score=110.95 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=64.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcC------------CCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeE
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKF------------GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqF------------G~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I 412 (576)
....++|||||| ++.+|+++|+++|.+| +.|..+.+.. .+|||||+|.+.++|..|| .||+..|
T Consensus 172 ~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred CccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 345689999999 8999999999999975 4566666655 7999999999999999999 5899999
Q ss_pred cCeEEEEeecc
Q 008148 413 CGARVLVKPYR 423 (576)
Q Consensus 413 ~Gr~I~Vk~Ak 423 (576)
.|+.|+|.+..
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997544
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=4.3e-08 Score=107.14 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=73.6
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhC-----CC-eeEcCeEEE
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-----NP-HFVCGARVL 418 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~l-----ng-~~I~Gr~I~ 418 (576)
++|||.|| ++++||++|.++|++||+|..+.|+.+ .++|.|||.|.+..+|..||... .+ ..|+||.|.
T Consensus 293 ~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 293 KTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred ceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 69999999 999999999999999999999999885 78999999999999999999986 34 789999999
Q ss_pred Eeeccccchhh
Q 008148 419 VKPYREKSRLV 429 (576)
Q Consensus 419 Vk~Ak~K~k~~ 429 (576)
|..|..|.+-.
T Consensus 372 v~~Av~RkeA~ 382 (678)
T KOG0127|consen 372 VTLAVTRKEAA 382 (678)
T ss_pred eeeccchHHHH
Confidence 99999987643
No 56
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.5e-08 Score=108.66 Aligned_cols=79 Identities=18% Similarity=0.389 Sum_probs=73.9
Q ss_pred EEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccccchh
Q 008148 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (576)
Q Consensus 351 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d--ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K~k~ 428 (576)
|||.|| +..++..+|.+.|+.||+|.+|++..+ .++|| ||.|++++.|++|++.+|+..+.|++|.|..+..+.+.
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999 899999999999999999999999996 68999 99999999999999999999999999999999887765
Q ss_pred hhh
Q 008148 429 VDR 431 (576)
Q Consensus 429 ~~~ 431 (576)
...
T Consensus 157 ~~~ 159 (369)
T KOG0123|consen 157 EAP 159 (369)
T ss_pred ccc
Confidence 433
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=2.2e-08 Score=101.25 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
=.|||-|| ..+.+|..|+.+|+.||.|+.|+|++| +.||||||+..+.++|.-|+..+|+..+.+|.+.|.+...
T Consensus 279 ~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 279 WCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 38999999 888999999999999999999999997 8899999999999999999999999999999999987543
Q ss_pred c
Q 008148 425 K 425 (576)
Q Consensus 425 K 425 (576)
|
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 3
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.74 E-value=1.4e-08 Score=114.21 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecccc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K 425 (576)
-.++|||||+| +..++|.||++.|+.||+|++|.++. .||+|||+.....+|.+|+.+|+.+.+.++.|+|.|+.-+
T Consensus 419 V~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 419 VCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred Eeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 34789999999 89999999999999999999999988 9999999999999999999999999999999999999988
Q ss_pred chhh
Q 008148 426 SRLV 429 (576)
Q Consensus 426 ~k~~ 429 (576)
+-..
T Consensus 496 G~ks 499 (894)
T KOG0132|consen 496 GPKS 499 (894)
T ss_pred Ccch
Confidence 7644
No 59
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=3e-08 Score=100.33 Aligned_cols=81 Identities=15% Similarity=0.294 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
.....|.|--| +..+|++++|.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+|+..+..+.|+|.+
T Consensus 39 ~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34557888888 889999999999999999999999997 7899999999999999999999999999999999999
Q ss_pred ccccch
Q 008148 422 YREKSR 427 (576)
Q Consensus 422 Ak~K~k 427 (576)
|+|...
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 998654
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=1.8e-08 Score=103.30 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccccchh
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K~k~ 428 (576)
.+|||||| +..+++.+|+.+|++||+|.+|.|++ .||||-.++...|+.|+..|++..|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 47999999 88999999999999999999999974 59999999999999999999999999999999999888553
No 61
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3.4e-08 Score=105.43 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCC-eeEcC--eEEE
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNP-HFVCG--ARVL 418 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng-~~I~G--r~I~ 418 (576)
...-|+|||.+ +.+++|.|||.+|++||.|.+|.|++| .++||+||+|.+.++|.+|+.+++. ..|-| ..|.
T Consensus 32 ~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34569999999 889999999999999999999999998 6899999999999999999999854 44544 7889
Q ss_pred Eeeccccchh
Q 008148 419 VKPYREKSRL 428 (576)
Q Consensus 419 Vk~Ak~K~k~ 428 (576)
|++|....+.
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9988754443
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.65 E-value=6e-08 Score=96.42 Aligned_cols=84 Identities=17% Similarity=0.265 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHH----HHhcCCCeeEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 347 GSRQIYLTFPAESTFTEQDVSN----YFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~----~FsqFG~V~~VrI~~d-ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
++.||||.|| ...+..++|++ +|++||+|.+|....- +.||=|||.|.+.+.|-.|+.+|+|..+.|+.++|.+
T Consensus 8 pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3459999999 78899999999 9999999999987653 7899999999999999999999999999999999999
Q ss_pred ccccchhhhh
Q 008148 422 YREKSRLVDR 431 (576)
Q Consensus 422 Ak~K~k~~~~ 431 (576)
|+.+..+..+
T Consensus 87 A~s~sdii~~ 96 (221)
T KOG4206|consen 87 AKSDSDIIAQ 96 (221)
T ss_pred ccCccchhhc
Confidence 9998776544
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.61 E-value=5e-08 Score=94.41 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEE-EeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~V-rI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
....+|||||| +..++|..|.+.|+.||.+... .|++| .++|||||.|++.|.+.+|+..||+..+++++|.|.
T Consensus 94 ~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 44579999999 7799999999999999998764 44553 789999999999999999999999999999999999
Q ss_pred eccccchhh
Q 008148 421 PYREKSRLV 429 (576)
Q Consensus 421 ~Ak~K~k~~ 429 (576)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 988765543
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6e-08 Score=101.51 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCC----CCceEEEEECCHHHHHHHHHhCCCeeEcCeEEE
Q 008148 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ----KRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (576)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dk----sRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~ 418 (576)
...|+..-|||--| ...+|.+||.-+||.||+|..|.|++|+ +-.||||.|++.+++++|+-+|+++.|+.++|.
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45688899999999 7788999999999999999999999983 566999999999999999999999999999999
Q ss_pred Eeeccccc
Q 008148 419 VKPYREKS 426 (576)
Q Consensus 419 Vk~Ak~K~ 426 (576)
|.+.+.=.
T Consensus 313 VDFSQSVs 320 (479)
T KOG0415|consen 313 VDFSQSVS 320 (479)
T ss_pred eehhhhhh
Confidence 98876533
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=5.7e-08 Score=98.64 Aligned_cols=84 Identities=18% Similarity=0.287 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEE
Q 008148 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (576)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~ 418 (576)
..+|..+.|||-.| +.++.+.+|-..|-.||.|++.+|..| ++|.||||.|+++.+|++||..|||..|+-+|++
T Consensus 280 reGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 280 REGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hcCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 35678899999999 889999999999999999999999886 7999999999999999999999999999999999
Q ss_pred Eeeccccch
Q 008148 419 VKPYREKSR 427 (576)
Q Consensus 419 Vk~Ak~K~k 427 (576)
|...++|..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 988776654
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.50 E-value=2.8e-07 Score=98.65 Aligned_cols=77 Identities=27% Similarity=0.313 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHh-cCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...|.+||+|| ++++...+|+++|. +-|+|+.|.+..| +.||+|.|+|+++|.+++|++.||.+.+.||.|.|+.
T Consensus 42 ~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34567999999 99999999999996 7999999999997 8999999999999999999999999999999999985
Q ss_pred cc
Q 008148 422 YR 423 (576)
Q Consensus 422 Ak 423 (576)
-.
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 43
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=3.6e-07 Score=92.94 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCe-eEcC--eEEEE
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPH-FVCG--ARVLV 419 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~-~I~G--r~I~V 419 (576)
...++||||-| ...-.||||+.+|..||+|++|.+.++ .+||+|||.|.+.-+|..||..+++. .+-| .-+.|
T Consensus 17 ~~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 46789999999 888899999999999999999999884 78999999999999999999998763 3333 56888
Q ss_pred eeccccchhhhhH
Q 008148 420 KPYREKSRLVDRK 432 (576)
Q Consensus 420 k~Ak~K~k~~~~~ 432 (576)
|++...++...|+
T Consensus 96 K~ADTdkER~lRR 108 (371)
T KOG0146|consen 96 KFADTDKERTLRR 108 (371)
T ss_pred EeccchHHHHHHH
Confidence 9887666554443
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.41 E-value=4.9e-07 Score=89.08 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcC-CCeeEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF-GPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqF-G~V~~VrI~~----dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
....-+||+.+ +.-+.|..+..||.+| |.|..+++.+ +.+||||||.|++++.|+-|.+.||+..+.|+.+.|.
T Consensus 47 ~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 34556899999 7889999999999998 8888998877 3799999999999999999999999999999999998
Q ss_pred eccccchh
Q 008148 421 PYREKSRL 428 (576)
Q Consensus 421 ~Ak~K~k~ 428 (576)
.-.+....
T Consensus 126 vmppe~~v 133 (214)
T KOG4208|consen 126 VMPPEQKV 133 (214)
T ss_pred EeCchhhh
Confidence 76554333
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.35 E-value=5.9e-07 Score=98.58 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
.+.|||.+| ..++...||+++|++||+|+-.+|+.. ..|.|||||..+.++|.++|+.|+...|.|+.|.|..++
T Consensus 405 gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 579999999 888888999999999999999999986 468899999999999999999999999999999998876
Q ss_pred c
Q 008148 424 E 424 (576)
Q Consensus 424 ~ 424 (576)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=98.56 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC-------CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 350 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d-------ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
+|||.|| .+++|.+++...|.+.|.|..+.|..- .+.|||||.|.+.++|++|+..|+++.|+|+.|.|+.+
T Consensus 517 ~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4999999 999999999999999999999999873 24499999999999999999999999999999999988
Q ss_pred c
Q 008148 423 R 423 (576)
Q Consensus 423 k 423 (576)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=1.2e-06 Score=92.21 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
..+|||..+ ..+++|+||+..|+.||+|..|.+.++ .+|||||++|.+..+-..|+..||-..++|.-++|..+.
T Consensus 210 fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 347999999 899999999999999999999999885 799999999999999999999999999999999997765
Q ss_pred cc
Q 008148 424 EK 425 (576)
Q Consensus 424 ~K 425 (576)
..
T Consensus 289 TP 290 (544)
T KOG0124|consen 289 TP 290 (544)
T ss_pred CC
Confidence 43
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.27 E-value=7.5e-07 Score=100.06 Aligned_cols=80 Identities=23% Similarity=0.426 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
..+|.|.|+ ++..+-.+|+.+|+.||.|.+|+||.. .+||||||+|.++.+|..|++.+....+.||++.+.||+
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 469999999 999999999999999999999999983 579999999999999999999999999999999999998
Q ss_pred ccchh
Q 008148 424 EKSRL 428 (576)
Q Consensus 424 ~K~k~ 428 (576)
....+
T Consensus 692 ~d~~~ 696 (725)
T KOG0110|consen 692 SDNTM 696 (725)
T ss_pred cchHH
Confidence 76553
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=9.2e-07 Score=94.98 Aligned_cols=80 Identities=21% Similarity=0.440 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
.....|||.|+ +..++.+.|+++|+.||+|..++|+.+ +++|||||.|...++|.+|+..+|+..+.++.+.|.++
T Consensus 268 ~~~~nl~vknl-d~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 268 LQGANLYVKNL-DETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVA 346 (369)
T ss_pred ccccccccccC-ccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHH
Confidence 44679999999 889999999999999999999999884 89999999999999999999999999999999999998
Q ss_pred cccc
Q 008148 423 REKS 426 (576)
Q Consensus 423 k~K~ 426 (576)
+.+.
T Consensus 347 qr~~ 350 (369)
T KOG0123|consen 347 QRKE 350 (369)
T ss_pred hhhc
Confidence 8443
No 74
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.18 E-value=3.5e-06 Score=91.60 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
..+|||++| +.++++.+|+++|.+||+|+..+|.. ++...||||+|.+.+.++.|+.+ +...|+|+++.|+.-+
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 346999999 89999999999999999999999866 34448999999999999999999 7999999999998655
Q ss_pred c
Q 008148 424 E 424 (576)
Q Consensus 424 ~ 424 (576)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 5
No 75
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.15 E-value=8.6e-07 Score=88.16 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d--ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
.+..+||||+++ ...++|+-|.++|-+-|+|.+|.|+.+ ...-||||.|.++-.+..|++-||+..+.++.+.|++.
T Consensus 6 ae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 355789999999 899999999999999999999999885 33339999999999999999999999999999999876
Q ss_pred ccc
Q 008148 423 REK 425 (576)
Q Consensus 423 k~K 425 (576)
...
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 543
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.11 E-value=7.6e-06 Score=92.08 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC-------CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEE
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d-------ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I 417 (576)
.|..+.+||+|| +..++|+.|-..|+.||+|..|+|+.- +.+-+|||.|-+..+|++|++.|++.++.++.+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 466889999999 888999999999999999999999882 678899999999999999999999999999999
Q ss_pred EEeeccc
Q 008148 418 LVKPYRE 424 (576)
Q Consensus 418 ~Vk~Ak~ 424 (576)
++.|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999853
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=2.5e-06 Score=85.22 Aligned_cols=71 Identities=25% Similarity=0.480 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
.++|||++ ++.+.+.+|..+|..||.|.+|.+ +.|||||.|++..+|..|+..+|+.+|+|.++.|.++..
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 36899999 999999999999999999999988 678999999999999999999999999999988888875
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.01 E-value=9.8e-06 Score=87.15 Aligned_cols=73 Identities=22% Similarity=0.136 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec-CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
+..++|||.|| ++++|...|++-|..||.|..+.|+. ++++| .|.|.++++|++|+..||+..++||.|+|.+
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45678999999 99999999999999999999999965 36665 8999999999999999999999999999975
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.85 E-value=4.7e-05 Score=77.59 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
..+...+|+|.|| ++.++++||+++|.+||.+..+-|-++ ++.|.|=|+|...++|.+|++.+++.-++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3345679999999 999999999999999999999999886 678999999999999999999999999999999987
Q ss_pred ecccc
Q 008148 421 PYREK 425 (576)
Q Consensus 421 ~Ak~K 425 (576)
.....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76554
No 80
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.82 E-value=5.4e-05 Score=82.29 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
....+.+-+.-.+..--|-++|-.+|.+||+|..|.|-+ .---|.|||....+|-.|... .+..|+||.|+|.|..+
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEEEecC
Confidence 334444444444233346799999999999999998866 444699999999999888877 89999999999999887
Q ss_pred cc
Q 008148 425 KS 426 (576)
Q Consensus 425 K~ 426 (576)
-.
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 54
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=2.1e-05 Score=86.73 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=67.9
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEE
Q 008148 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (576)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~ 418 (576)
......++|+|-+| +.++++++|+..|+.||+|..|+.-. .++|-.||.|-|..+|++|++++++..|.|++|+
T Consensus 70 ~~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33466789999999 89999999999999999999988755 3799999999999999999999999999999998
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.67 E-value=3.5e-05 Score=78.32 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...-+||-|.| .-+++.+.|-+.|.+|=.-...++++| +++|||||.|.+..++..|+.+||+..++.|.|+...
T Consensus 188 ~~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 188 EDDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34559999999 778999999999999998888899986 8999999999999999999999999999999998765
Q ss_pred cccc
Q 008148 422 YREK 425 (576)
Q Consensus 422 Ak~K 425 (576)
...|
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 4433
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.67 E-value=5.1e-05 Score=76.88 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...+.+|||++ ++.+|-+++..+|+.+|.|..|.|++| ..|||+||.|.+.+.+..|+. ||+..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45678999999 998888889999999999999999997 578999999999999999999 899999999999987
Q ss_pred cccc
Q 008148 422 YREK 425 (576)
Q Consensus 422 Ak~K 425 (576)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6654
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.57 E-value=0.00024 Score=76.29 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecccc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K 425 (576)
+..|.|.+|....+|.+.|..+|+-||.|.+|+|.+.+ +--|.|.|.+...|+.|++.|+++.|.|++|+|...+-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 67899999988999999999999999999999999854 468999999999999999999999999999999887643
No 85
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.46 E-value=2.5e-05 Score=53.51 Aligned_cols=23 Identities=43% Similarity=1.246 Sum_probs=18.2
Q ss_pred ccccccccc-ccCCCCCCCccCCC
Q 008148 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (576)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrF~Hg 214 (576)
-++|.+|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 478999988 99999999999997
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.44 E-value=0.00052 Score=68.96 Aligned_cols=86 Identities=13% Similarity=0.206 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec-CC----CCceEEEEECCHHHHHHHHHhCCCeeE---cCeEE
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-QQ----KRMFGFVTFVFAETVKQILAKGNPHFV---CGARV 417 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-dk----sRGfGFVtF~~~e~A~~Al~~lng~~I---~Gr~I 417 (576)
...|||||.+| +.++...+|..+|..|---+.+.|-+ ++ .+-+|||+|.+...|.+|+..+||..+ ++..+
T Consensus 32 ~~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34689999999 88999999999999986555554433 21 246999999999999999999999998 57899
Q ss_pred EEeeccccchhhhhH
Q 008148 418 LVKPYREKSRLVDRK 432 (576)
Q Consensus 418 ~Vk~Ak~K~k~~~~~ 432 (576)
++..|+...|...++
T Consensus 111 hiElAKSNtK~kr~k 125 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRK 125 (284)
T ss_pred EeeehhcCcccccCC
Confidence 999998877766543
No 87
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.15 E-value=0.0012 Score=69.89 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeE--------EEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCe
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr 415 (576)
.+..|||.+| +.++|-+++.++|+++|-|.. |++-++ +-+|=|.++|-..|+|..|+..|++..+.|+
T Consensus 133 ~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3556999999 889999999999999998763 344443 6799999999999999999999999999999
Q ss_pred EEEEeeccc
Q 008148 416 RVLVKPYRE 424 (576)
Q Consensus 416 ~I~Vk~Ak~ 424 (576)
.|+|..|+-
T Consensus 212 ~~rVerAkf 220 (382)
T KOG1548|consen 212 KLRVERAKF 220 (382)
T ss_pred EEEEehhhh
Confidence 999988864
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.07 E-value=0.0017 Score=71.23 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d--ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
+...-|-+.+| +|+.|++||.+||+-.+ |+++.+++. +..|=|||+|.++|++++|+++ +...+..|=|.|..+.
T Consensus 8 ~~~~~vr~rGL-Pwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGL-PWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCC-CccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34456778899 99999999999999996 788888884 8899999999999999999999 8999999999998775
Q ss_pred cc
Q 008148 424 EK 425 (576)
Q Consensus 424 ~K 425 (576)
.+
T Consensus 85 ~~ 86 (510)
T KOG4211|consen 85 GA 86 (510)
T ss_pred Cc
Confidence 44
No 89
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.02 E-value=0.00036 Score=46.82 Aligned_cols=22 Identities=32% Similarity=1.234 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008148 193 KVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
.+|.+|..|.|++|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999996
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.83 E-value=0.0055 Score=54.47 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=63.8
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhc--CCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEc----CeEEE
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVL 418 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~Fsq--FG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~----Gr~I~ 418 (576)
+||-|.|| +-..|.++|.+++.. .|...-+.+|.| ...|||||.|.+++.|.+-.+..++..+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 58999999 778999999998865 577778888887 56999999999999999999999988875 46677
Q ss_pred Eeeccccc
Q 008148 419 VKPYREKS 426 (576)
Q Consensus 419 Vk~Ak~K~ 426 (576)
|.+|.-.+
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 77765443
No 91
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.81 E-value=0.00092 Score=72.27 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=81.4
Q ss_pred ccccccccccccCCchHHHHHHHhhhccccccCCCCcchhhhc--------cccccccccCCCCCCCCCCCCCCcEEEEc
Q 008148 283 EGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILA--------EDVPKYLEYSGEKSDPGGIVAGSRQIYLT 354 (576)
Q Consensus 283 ~g~~~esqR~gkaGys~~kll~rLkN~i~lidr~~GQ~~vvl~--------ed~~K~~~~r~~r~d~~~~~~~~rtIyVg 354 (576)
+.++.+--|..+.||=.+++++.. .+|+.+-|-+-+-+.+|. ||-.|.. .-..-.++....-.+++|.+.
T Consensus 160 d~fLlkhvrrnkeGyVpv~~vaSF-KKvK~LTrd~~~va~ALr~S~kL~vseDgkKVr-RisPlp~~~~eel~srtivae 237 (484)
T KOG1855|consen 160 DAFLLKHVRRNKEGYVPVKLVASF-KKVKALTRDWKLVADALRKSSKLEVSEDGKKVR-RISPLPEFDEEELPSRTIVAE 237 (484)
T ss_pred hHHHHHHHhcCCCCceeeehhhhH-HHHHHHhhhhHHHHHHHhhcceEEEccCCceee-ecCCCCCccccccccceEEEe
Confidence 334444456677899777777666 355545454443332322 2222221 111112222233468999999
Q ss_pred CCCCCCCCHHHHHHHHhcCCCeeEEEeecC-----------------CCCceEEEEECCHHHHHHHHHhCCCe
Q 008148 355 FPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----------------QKRMFGFVTFVFAETVKQILAKGNPH 410 (576)
Q Consensus 355 ~L~~~~~TEedLr~~FsqFG~V~~VrI~~d-----------------ksRGfGFVtF~~~e~A~~Al~~lng~ 410 (576)
+| +.+-.-+.|.++|+.+|.|..|||..- +.+-+|+|+|+..+.|.+|.+.||..
T Consensus 238 nL-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 238 NL-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred cC-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 99 555566999999999999999999761 13678999999999999999998543
No 92
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.76 E-value=0.00091 Score=67.18 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=61.0
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...+.|.++ ...+...+|.++|.+||++..+.+ .++++||.|...++|++|++.+++..+.|+.|.|..
T Consensus 99 ~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 99 HFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 457888888 677888999999999999966555 588999999999999999999999999999999933
No 93
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.75 E-value=0.00067 Score=75.12 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
.+|+|+-.+ .-..++.+|.++|+.+|+|.+|+|+.| +++|.|+|.|.+.+.+..|+. |.|+.+.|..|.|....
T Consensus 179 ~Rtvf~~ql-a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQL-ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHH-hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 468999888 578899999999999999999999997 789999999999999999995 59999999999998754
Q ss_pred c
Q 008148 424 E 424 (576)
Q Consensus 424 ~ 424 (576)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 3
No 94
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.75 E-value=0.0038 Score=49.30 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHH
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQIL 404 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al 404 (576)
+.|-|.+. +.. ..+.|..+|.+||+|+++.+.. ..-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf-~~~-~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPD-LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-Cch-HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 56778777 333 3477788999999999999974 5779999999999999985
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.66 E-value=0.0064 Score=52.95 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=46.6
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHh----cC-CCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFS----KF-GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~Fs----qF-G~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
..|||.|| +...+...|+.... -+ |+|..| ..+-|.|.|.+.+.|.+|...|++..+.|.+|.|.+..
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999 66666666655554 44 588877 56899999999999999999999999999999999864
Q ss_pred cc
Q 008148 424 EK 425 (576)
Q Consensus 424 ~K 425 (576)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 96
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.0033 Score=69.96 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
...+|||++| +..+++.++++....||++...+++.| .++||||..|.++.....|++.+||..+.++++.|..|
T Consensus 288 ~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4579999999 889999999999999999999999885 68999999999999999999999999999999999988
Q ss_pred cccch
Q 008148 423 REKSR 427 (576)
Q Consensus 423 k~K~k 427 (576)
..-.+
T Consensus 367 ~~g~~ 371 (500)
T KOG0120|consen 367 IVGAS 371 (500)
T ss_pred hccch
Confidence 76544
No 97
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.52 E-value=0.0015 Score=68.22 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=72.6
Q ss_pred CCCcEEE-EcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 346 AGSRQIY-LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 346 ~~~rtIy-Vg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
-...++| |+++ ++.+++++|+.+|..+|.|..|+++.+ ..+|||+|.|.+...+..++.. ..+.+.++.+.|.
T Consensus 182 ~~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 182 GPSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred Cccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 3456777 9999 999999999999999999999999885 7899999999999999999998 8899999999999
Q ss_pred eccccchh
Q 008148 421 PYREKSRL 428 (576)
Q Consensus 421 ~Ak~K~k~ 428 (576)
...++.+.
T Consensus 260 ~~~~~~~~ 267 (285)
T KOG4210|consen 260 EDEPRPKS 267 (285)
T ss_pred cCCCCccc
Confidence 88877654
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.44 E-value=0.0036 Score=56.17 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=37.3
Q ss_pred EEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCC
Q 008148 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (576)
Q Consensus 350 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~ln 408 (576)
-|.|.++ ...++.++|++.|++||+|..|.+.. .---|+|-|.+++.|++|++.+.
T Consensus 3 il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 3667777 77788999999999999999998877 45589999999999999999863
No 99
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.34 E-value=0.025 Score=60.15 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=69.8
Q ss_pred cccCCCCCCCCCCCCCCcEEEEcCCCC---CCCC-------HHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHH
Q 008148 332 LEYSGEKSDPGGIVAGSRQIYLTFPAE---STFT-------EQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVK 401 (576)
Q Consensus 332 ~~~r~~r~d~~~~~~~~rtIyVg~L~~---~~~T-------EedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~ 401 (576)
.++++++ +........++|.+.|+-. ...+ .++|+.--++||.|.+|.|.-....|.+-|+|.+.+.|.
T Consensus 250 ~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 250 LDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEAD 328 (382)
T ss_pred cccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHH
Confidence 3445555 3334445678999988721 1233 356666689999999995543357999999999999999
Q ss_pred HHHHhCCCeeEcCeEEEEeeccccc
Q 008148 402 QILAKGNPHFVCGARVLVKPYREKS 426 (576)
Q Consensus 402 ~Al~~lng~~I~Gr~I~Vk~Ak~K~ 426 (576)
.++..|+|..++||.|....+-.+.
T Consensus 329 ~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 329 QCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHhcCeeecceEEEEEEeCCcc
Confidence 9999999999999999987765443
No 100
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.27 E-value=0.02 Score=51.24 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=51.5
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEE-------------eecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCe
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-------------IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~Vr-------------I~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr 415 (576)
..|.|-+- +.. ....|-++|++||+|.+.. ++. ...+--|+|+++.+|.+||.+ ||..|.|.
T Consensus 7 ~wVtVFGf-p~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGF-PPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGS 81 (100)
T ss_dssp CEEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTC
T ss_pred eEEEEEcc-CHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCc
Confidence 44666555 222 5678889999999999885 333 677899999999999999999 99999985
Q ss_pred -EEEEeecc
Q 008148 416 -RVLVKPYR 423 (576)
Q Consensus 416 -~I~Vk~Ak 423 (576)
.|-|++.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 55567664
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.26 E-value=0.0098 Score=62.94 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=60.0
Q ss_pred CcEEEEcCCCCCCCCHH---HH--HHHHhcCCCeeEEEeecC-----CCCc-eE-EEEECCHHHHHHHHHhCCCeeEcCe
Q 008148 348 SRQIYLTFPAESTFTEQ---DV--SNYFSKFGPVQDVRIPCQ-----QKRM-FG-FVTFVFAETVKQILAKGNPHFVCGA 415 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEe---dL--r~~FsqFG~V~~VrI~~d-----ksRG-fG-FVtF~~~e~A~~Al~~lng~~I~Gr 415 (576)
..-+||-+|++....|+ .| .+||+|||+|.+|-|-+. ---+ +| +|||...|+|.++|++.++..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999955555555 23 479999999999977552 1112 33 9999999999999999999999999
Q ss_pred EEEEeecccc
Q 008148 416 RVLVKPYREK 425 (576)
Q Consensus 416 ~I~Vk~Ak~K 425 (576)
-|+..+...|
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9998765443
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.22 E-value=0.013 Score=64.48 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeE-EEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
....|-+.+| +|.+||+||.+||+--=.|.+ |-++.| ++-|=|||.|++.|.|+.|+.. +...|..|=|.|..+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4557888999 999999999999997766665 444554 7788999999999999999999 899999999999765
Q ss_pred c
Q 008148 423 R 423 (576)
Q Consensus 423 k 423 (576)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 103
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.019 Score=63.68 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHHh-cCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeE----c
Q 008148 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV----C 413 (576)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I----~ 413 (576)
......+|||||+| +.-+|.++|-.+|. -||-|.-|-|=.| ..+|-|-|||.+..+--+||++ --..| -
T Consensus 365 q~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~ 442 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDI 442 (520)
T ss_pred cccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEecccc
Confidence 34456789999999 88899999999999 7999999988766 5799999999999999999998 33333 2
Q ss_pred CeEEEEeecc
Q 008148 414 GARVLVKPYR 423 (576)
Q Consensus 414 Gr~I~Vk~Ak 423 (576)
.++|.|++|.
T Consensus 443 ~KRVEIkPYv 452 (520)
T KOG0129|consen 443 DKRVEIKPYV 452 (520)
T ss_pred ceeeeeccee
Confidence 3689999988
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.05 E-value=0.015 Score=64.82 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCeeEEEeecC-------CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 364 QDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 364 edLr~~FsqFG~V~~VrI~~d-------ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
|+|+.-+++||.|..|.|+.+ -.-|--||+|.+.+++++|+++|+|..+.||.|...+|-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 566777899999999999884 3456679999999999999999999999999888876643
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.016 Score=64.22 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC-------CCCc---eEEEEECCHHHHHHHHHhCCCeeEcCe
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRM---FGFVTFVFAETVKQILAKGNPHFVCGA 415 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d-------ksRG---fGFVtF~~~e~A~~Al~~lng~~I~Gr 415 (576)
.-+++||||+| +|+++|+.|...|.+||.|. |..+.. .++| |.|+.|+++..+++.+.+ ...+..
T Consensus 257 ~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~~~ 331 (520)
T KOG0129|consen 257 RYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEGEG 331 (520)
T ss_pred ccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhccc
Confidence 45789999999 99999999999999999864 445521 3577 999999999999988877 333444
Q ss_pred EEEEeeccc
Q 008148 416 RVLVKPYRE 424 (576)
Q Consensus 416 ~I~Vk~Ak~ 424 (576)
...++...+
T Consensus 332 ~~yf~vss~ 340 (520)
T KOG0129|consen 332 NYYFKVSSP 340 (520)
T ss_pred ceEEEEecC
Confidence 444444333
No 106
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.93 E-value=0.0041 Score=39.46 Aligned_cols=19 Identities=32% Similarity=0.926 Sum_probs=17.1
Q ss_pred cccccccccCCCCCCCccCCC
Q 008148 194 VCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 194 pC~YFarG~Ck~G~sCrF~Hg 214 (576)
||+||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998877 999999999993
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.87 E-value=0.032 Score=56.20 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEc-CeEEEEeec
Q 008148 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (576)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~-Gr~I~Vk~A 422 (576)
..++...+|+.+| +..++.+.+..+|.+|.--.+|+++.. .++.|||+|.+...|..|...+.+..|- ...+.|..+
T Consensus 142 ~~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 3567889999999 788999999999999999999999763 5789999999999999999998777765 777777765
Q ss_pred c
Q 008148 423 R 423 (576)
Q Consensus 423 k 423 (576)
+
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 4
No 108
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.54 E-value=0.014 Score=59.06 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=54.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeE
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I 412 (576)
....||||.|| ...+||++|+.+|+.|--...++|--....-+|||.|++.+.|..|+..+.|..|
T Consensus 208 ~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 44669999999 8999999999999999877777775433445889999999999988888766555
No 109
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.54 E-value=0.0052 Score=66.28 Aligned_cols=27 Identities=41% Similarity=1.045 Sum_probs=24.6
Q ss_pred CcccccccccccCCCCCCCccCCCCCC
Q 008148 191 PVKVCHYFNKGFCKHGNNCRYFHGHPM 217 (576)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrF~Hg~~~ 217 (576)
..|||.||-.|.|+.|.+|||.||..+
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hhccchHhhccccccCcccccccCccc
Confidence 589999999999999999999999543
No 110
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.52 E-value=0.016 Score=61.70 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeE--------EEeecC----CCCceEEEEECCHHHHHHHHHhCCCeeE
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng~~I 412 (576)
....-+|||-.+ +..+++.++.++|.+.|.|.. |.|-+| +.||=|-|+|+++-.|+.|+.-.++..+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 455679999999 788999999999999998753 223223 6899999999999999999999999999
Q ss_pred cCeEEEEeeccccchh
Q 008148 413 CGARVLVKPYREKSRL 428 (576)
Q Consensus 413 ~Gr~I~Vk~Ak~K~k~ 428 (576)
+|-.|+|..|..+..+
T Consensus 142 ~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGV 157 (351)
T ss_pred cCCCchhhhhhhccCc
Confidence 9999999999887754
No 111
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.44 E-value=0.015 Score=48.07 Aligned_cols=51 Identities=33% Similarity=0.531 Sum_probs=38.8
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 008148 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (576)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~lllqd~~e~emirla~gpd~~~~~~i~~ak~~l 61 (576)
.-+|.+|++++|+.|.||-|+||= .+..|++.| +..+.+|.+-|.+|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~l-le~~~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHL-LESPELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHH-hcCHHHHHHHHHHHHHHH
Confidence 358999999999999999999985 455777777 455566667777665433
No 112
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.39 E-value=0.01 Score=50.11 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=40.4
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHH
Q 008148 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60 (576)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~lllqd~~e~emirla~gpd~~~~~~i~~ak~~ 60 (576)
..+|.+|++++|++|.||-|+||= .+..|++.|=-.| .+|+.-|.+|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe--~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLE--MDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT--SCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhc--CCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 468999999999999999999984 5677888886554 6777788877653
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.24 E-value=0.065 Score=51.04 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=54.9
Q ss_pred CCCCCCCcEEEEcCCCC------CCCCH---HHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeE
Q 008148 342 GGIVAGSRQIYLTFPAE------STFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (576)
Q Consensus 342 ~~~~~~~rtIyVg~L~~------~~~TE---edLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I 412 (576)
+..+|+..||.|.-. . ..+.+ .+|-+.|.+||+|.=||.+- +-=+|||.+-+.|-+|+.. ++..|
T Consensus 21 ~~~GPpDaTVvVsv~-~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v 94 (146)
T PF08952_consen 21 SSQGPPDATVVVSVD-SPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQV 94 (146)
T ss_dssp -----TT-EEEEEEC-S-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEE
T ss_pred HhcCCCCceEEEEec-CCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEE
Confidence 466788889988776 3 23443 36677899999999998875 3579999999999999998 99999
Q ss_pred cCeEEEEeecccc
Q 008148 413 CGARVLVKPYREK 425 (576)
Q Consensus 413 ~Gr~I~Vk~Ak~K 425 (576)
+|+.|+|+.-.+.
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999875543
No 114
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.03 E-value=0.028 Score=62.93 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=58.3
Q ss_pred cEEEEcCCCCC-----CCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEc-CeEEEE
Q 008148 349 RQIYLTFPAES-----TFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLV 419 (576)
Q Consensus 349 rtIyVg~L~~~-----~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~-Gr~I~V 419 (576)
..|+|.|+|-- ..-..-|.++|+++|+|+.+.+|.+ ..+||.|+.|.+..+|+.|+..+||+.|+ +.+..|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 45677776211 1112346778999999999999975 78999999999999999999999998875 577777
Q ss_pred eeccc
Q 008148 420 KPYRE 424 (576)
Q Consensus 420 k~Ak~ 424 (576)
...+.
T Consensus 139 ~~f~d 143 (698)
T KOG2314|consen 139 RLFKD 143 (698)
T ss_pred ehhhh
Confidence 65543
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.01 E-value=0.089 Score=56.63 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecccc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K 425 (576)
+...-+.|-+|-...++-+.|.++|-.||.|++|+.++ -+-|-|.|+..+...+++|+..||+..+.|.+|.|+..+..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 34567889999567888899999999999999999987 36789999999999999999999999999999999987654
No 116
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.93 E-value=0.027 Score=59.90 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=60.9
Q ss_pred EEEEcCCCCCCCCHHHHHHHHhcCC--CeeEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 350 QIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 350 tIyVg~L~~~~~TEedLr~~FsqFG--~V~~VrI~~----dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
.+||||| -|.+|++||-+....-| .+.+++... +++||||.|...+...+++.++.|....|.|..-.|-.+.
T Consensus 82 ~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 7999999 89999999999887777 333444333 3899999999999999999999999999999877776554
Q ss_pred c
Q 008148 424 E 424 (576)
Q Consensus 424 ~ 424 (576)
.
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.84 E-value=0.033 Score=63.70 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeE-EEeec---CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~---dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
.....|||..| +..+++.++-++|..--.|++ |.|.+ ++-++.|||.|..++++.+|+..-..+.++.|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 44669999999 889999999999999888888 65544 68899999999999888888888788999999999987
Q ss_pred ccccc
Q 008148 422 YREKS 426 (576)
Q Consensus 422 Ak~K~ 426 (576)
..++.
T Consensus 511 i~~~~ 515 (944)
T KOG4307|consen 511 IADYA 515 (944)
T ss_pred hhhHH
Confidence 65543
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.36 E-value=0.02 Score=58.70 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=58.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec-C--------CCC-------ceEEEEECCHHHHHHHHHhCCCee
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-Q--------QKR-------MFGFVTFVFAETVKQILAKGNPHF 411 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-d--------ksR-------GfGFVtF~~~e~A~~Al~~lng~~ 411 (576)
..-||+++| +..+...-||++|++||.|=.|.+.. + +.. -=|+|.|.+...|+++.+.||+..
T Consensus 74 ~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 457999999 78899999999999999999999866 2 111 137899999999999999999999
Q ss_pred EcCeE
Q 008148 412 VCGAR 416 (576)
Q Consensus 412 I~Gr~ 416 (576)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99974
No 119
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.12 E-value=0.022 Score=58.37 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=50.8
Q ss_pred HHHHHHHh-cCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 364 QDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 364 edLr~~Fs-qFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
++|...|+ +||+|+++.|..+ .-+|=.+|.|..+|+|++|++.+|+.++.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 56666666 9999999977663 55889999999999999999999999999999987654
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.98 E-value=0.12 Score=60.63 Aligned_cols=84 Identities=8% Similarity=0.085 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcC--eEEEEee
Q 008148 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKP 421 (576)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~G--r~I~Vk~ 421 (576)
.....+.++||+| .....-..|...|..||+|..|.+-. ..-|++|.|++...++.|+..|-+.-|+| +++.|.+
T Consensus 451 kst~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCC-CCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 3455789999999 55578899999999999999977744 66799999999999999999999999977 8899999
Q ss_pred ccccchhhh
Q 008148 422 YREKSRLVD 430 (576)
Q Consensus 422 Ak~K~k~~~ 430 (576)
+.+......
T Consensus 528 a~~~~~~Pq 536 (975)
T KOG0112|consen 528 ASPPGATPQ 536 (975)
T ss_pred ccCCCCChh
Confidence 988766543
No 121
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.82 E-value=0.032 Score=58.69 Aligned_cols=27 Identities=48% Similarity=1.249 Sum_probs=25.1
Q ss_pred CCCCccccccccc-ccCCCCCCCccCCC
Q 008148 188 PEFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (576)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~G~sCrF~Hg 214 (576)
....-++|.+|.+ |+||.|..|+|.|+
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~ 200 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHG 200 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCC
Confidence 4677899999999 99999999999999
No 122
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=93.49 E-value=0.16 Score=55.22 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=68.9
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCe-EEEEeec
Q 008148 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPY 422 (576)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr-~I~Vk~A 422 (576)
..|++.||.+.++ +..++||++++.|.+-|-+++...-.++.|-++.+.+.+.|.|-.|+-.++.|.+++. -++|.+.
T Consensus 410 i~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 410 IFPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred cCCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 3477789999999 8899999999999999988877776667788999999999999999999999998775 7888776
Q ss_pred c
Q 008148 423 R 423 (576)
Q Consensus 423 k 423 (576)
+
T Consensus 489 k 489 (492)
T KOG1190|consen 489 K 489 (492)
T ss_pred c
Confidence 5
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.81 E-value=0.25 Score=51.90 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCeeEEEeecC----CC-CceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeecc
Q 008148 363 EQDVSNYFSKFGPVQDVRIPCQ----QK-RMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (576)
Q Consensus 363 EedLr~~FsqFG~V~~VrI~~d----ks-RGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak 423 (576)
|+++++..++||.|..|-|... .. ----||.|...++|.+|+-.|||.+|+||.|...++.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5678888999999999977552 11 2237999999999999999999999999999988765
No 124
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.73 E-value=0.1 Score=54.37 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCCcEEEEcCCCC-C----------CCCHHHHHHHHhcCCCeeEEEeec
Q 008148 346 AGSRQIYLTFPAE-S----------TFTEQDVSNYFSKFGPVQDVRIPC 383 (576)
Q Consensus 346 ~~~rtIyVg~L~~-~----------~~TEedLr~~FsqFG~V~~VrI~~ 383 (576)
....|||+.+||- | --+|+-|+..|..||.|..|.||.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3456888888732 1 146889999999999999999976
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.66 E-value=1.2 Score=36.80 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=43.7
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcC---CCeeEEEeecCCCCceEEEEECCHHHHHHHHHhC
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKF---GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqF---G~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~l 407 (576)
..+|+|.++ .+++.+||+.||..| .....|..+-|. -+=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 357999999 568999999999999 234577777653 3667899999999999864
No 126
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.06 E-value=0.91 Score=44.87 Aligned_cols=62 Identities=15% Similarity=0.022 Sum_probs=47.7
Q ss_pred CHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCC--CeeEcCeEEEEeecccc
Q 008148 362 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPYREK 425 (576)
Q Consensus 362 TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~ln--g~~I~Gr~I~Vk~Ak~K 425 (576)
..+.|+++|.+|+++..+.+.+ +-+=..|.|.+.+.|.+|...++ +..+.|..++|.++..-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4588999999999999988876 65668999999999999999998 89999999999988543
No 127
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=89.88 E-value=1 Score=48.76 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=61.4
Q ss_pred CcEEEEcCCC-CCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcC--eEEEEeeccc
Q 008148 348 SRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYRE 424 (576)
Q Consensus 348 ~rtIyVg~L~-~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~G--r~I~Vk~Ak~ 424 (576)
.+-|.++-|+ -+.+|.+-|..+-...|+|..|-|.+. .---|.|+|++.+.|++|.+.||+..|.- -.++|.+|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 4444444442 468999999999999999999988872 33468999999999999999999998855 4677888877
Q ss_pred c
Q 008148 425 K 425 (576)
Q Consensus 425 K 425 (576)
.
T Consensus 199 ~ 199 (494)
T KOG1456|consen 199 T 199 (494)
T ss_pred c
Confidence 4
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.51 E-value=0.61 Score=50.72 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec--C-----CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC--Q-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~--d-----ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
.-|-|.|| ...+|.++++.+|+-.|+|.++++.. | -..-.+||.|.+...|..|-.- -+..+-++.+.|-+
T Consensus 8 ~vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRP 85 (479)
T ss_pred ceeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEe
Confidence 37899999 88999999999999999999999866 2 2344899999999998877555 44555566677777
Q ss_pred cccc
Q 008148 422 YREK 425 (576)
Q Consensus 422 Ak~K 425 (576)
|...
T Consensus 86 ~~~~ 89 (479)
T KOG4676|consen 86 YGDE 89 (479)
T ss_pred cCCC
Confidence 6543
No 129
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.87 E-value=1.6 Score=41.80 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=56.2
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHH---HHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEe
Q 008148 344 IVAGSRQIYLTFPAESTFTEQDVSN---YFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (576)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~TEedLr~---~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk 420 (576)
..++-.||.|.-|..---..+|++. ..+.||+|.+|.+. .|.-|.|+|.+..+|=+|+.+... ..-|..+.+.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 3467789999887322223455555 46789999999775 688999999999999999999644 5567777777
Q ss_pred ec
Q 008148 421 PY 422 (576)
Q Consensus 421 ~A 422 (576)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 63
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.75 E-value=0.12 Score=60.67 Aligned_cols=79 Identities=15% Similarity=0.276 Sum_probs=65.6
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec---CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~---dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
.-.++|||+|++ +..+++.+++..|..+|.|.+|.|=. .+.--||||.|.+...+-.|+..+-+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345789999999 99999999999999999999998844 23345999999999999999999888777666666666
Q ss_pred ccc
Q 008148 422 YRE 424 (576)
Q Consensus 422 Ak~ 424 (576)
..+
T Consensus 448 G~~ 450 (975)
T KOG0112|consen 448 GQP 450 (975)
T ss_pred ccc
Confidence 554
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=88.57 E-value=1.4 Score=51.04 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=62.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCee-EEEeec-C--CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPC-Q--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~-~VrI~~-d--ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
.+-|-+.|. +++++=+||-+||+-|-.+- +|+|-+ | ..-|=+-|.|++.+.|.+|...+++..|.+|.|++..
T Consensus 867 p~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 447778888 89999999999999998776 455544 2 6678899999999999999999999999999998853
No 132
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.39 E-value=1 Score=47.55 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=58.0
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCe-EEEEeeccccch
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYREKSR 427 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr-~I~Vk~Ak~K~k 427 (576)
..|-|-+.++. .-.-|-..|++||+|+++... +.-.+=.|.|...-+|++||.+ |+.+|+|. .|-|++...|..
T Consensus 198 ~WVTVfGFppg--~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 198 TWVTVFGFPPG--QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred ceEEEeccCcc--chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHH
Confidence 34445444233 456788999999999998666 3667999999999999999999 99999884 567888777654
Q ss_pred h
Q 008148 428 L 428 (576)
Q Consensus 428 ~ 428 (576)
+
T Consensus 273 i 273 (350)
T KOG4285|consen 273 I 273 (350)
T ss_pred h
Confidence 4
No 133
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.23 E-value=0.17 Score=54.47 Aligned_cols=22 Identities=45% Similarity=1.147 Sum_probs=21.4
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008148 193 KVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
.+|+||.+|+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999998
No 134
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.98 E-value=0.5 Score=51.78 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=60.4
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC----CCCceEEEEECCHHHHHHHHHhCCC-eeEcCeEEEEeecc
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPYR 423 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d----ksRGfGFVtF~~~e~A~~Al~~lng-~~I~Gr~I~Vk~Ak 423 (576)
.++|+||| ...++..||+.+|..- .++.. -+-||+||.+.+..-|.+|++.+++ ..+.|+++.|....
T Consensus 2 nklyignL-~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999 8899999999999754 22221 2688999999999999999999876 56899999999888
Q ss_pred ccchhh
Q 008148 424 EKSRLV 429 (576)
Q Consensus 424 ~K~k~~ 429 (576)
+|....
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 775544
No 135
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=87.50 E-value=2.6 Score=42.06 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=57.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeE--cCeEEEEee
Q 008148 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV--CGARVLVKP 421 (576)
Q Consensus 350 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I--~Gr~I~Vk~ 421 (576)
.+.|.+| +..-+.+||+++..+-|.|....+.+ -|+|.|.|...|+.+-|+.+++...+ .|....+..
T Consensus 117 RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 117 RVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eEEEecC-CCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 8999999 77889999999999999998888765 56999999999999999999876665 344444443
No 136
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=86.91 E-value=0.41 Score=53.73 Aligned_cols=35 Identities=37% Similarity=0.863 Sum_probs=29.8
Q ss_pred cccCCCCCCCCCcccccccccccCCCCCCCccCCC
Q 008148 180 TSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 180 ~~rrs~~~~~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
..||.+.-.--..-||-=|.||.|++|.+|.|.||
T Consensus 224 ARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 224 ARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cccCCcccccccCccCcccccCCCCCCCccccccc
Confidence 35666666566778999999999999999999999
No 137
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.70 E-value=0.092 Score=61.34 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=61.0
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
.++||.+| +..+.+++|+..|+.+|.|..|+|.- ++-||+|+|.|..++.+.+|+.....+.++...+-|..
T Consensus 668 ~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g 743 (881)
T KOG0128|consen 668 IKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISG 743 (881)
T ss_pred HHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeC
Confidence 48999999 88999999999999999999888762 47899999999999999999999777776644444443
No 138
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.45 E-value=0.34 Score=56.88 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec---CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccc
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~---dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~ 424 (576)
...++|.++ ++.-|.+.++.+++++|.+++++++. ++.+|.|||.|.++.++.+++..++...+.-..+.|....+
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999 89999999999999999999999877 37899999999999999999999888888777777765443
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.40 E-value=0.27 Score=52.31 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=59.0
Q ss_pred cEEEEcCCCCCCCCHHHHH--HHHhcCCCeeEEEeecCC-------CCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEE
Q 008148 349 RQIYLTFPAESTFTEQDVS--NYFSKFGPVQDVRIPCQQ-------KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr--~~FsqFG~V~~VrI~~dk-------sRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~V 419 (576)
+.+||-+|+.....|..|+ .||++||.|..|.+-.+. .---++|||...|+|..||...++...+|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4567777744445566665 489999999999887642 1123799999999999999999999999998776
Q ss_pred eeccccc
Q 008148 420 KPYREKS 426 (576)
Q Consensus 420 k~Ak~K~ 426 (576)
.....+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 6655543
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=86.00 E-value=1.1 Score=48.67 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=53.5
Q ss_pred EEEEcCCCCCCCCHHHHHHHHhcC----CCeeEEEeec---CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 350 QIYLTFPAESTFTEQDVSNYFSKF----GPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 350 tIyVg~L~~~~~TEedLr~~FsqF----G~V~~VrI~~---dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
-|-..+| +++.|+.||.+||..- |-++.|-.+. ++.-|=|||.|..+++|+.||.+ +...|+-|-|.+.+.
T Consensus 163 ivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 3455789 8999999999999732 2333333332 48889999999999999999999 777777776666443
No 141
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=84.40 E-value=1.2 Score=50.79 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=63.2
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHh-cCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeE---cCeEEEEe
Q 008148 345 VAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVLVK 420 (576)
Q Consensus 345 ~~~~rtIyVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I---~Gr~I~Vk 420 (576)
+..++-|||.|| -.-||.-+|+.+.+ ..|.|++..| |+-+--+||+|.+.+.|.....+|+++.+ +++.|.|.
T Consensus 441 ~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 441 KEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCccceEeeecc-cccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 455779999999 77899999999999 6778888744 55667799999999999999999998876 56777776
Q ss_pred eccc
Q 008148 421 PYRE 424 (576)
Q Consensus 421 ~Ak~ 424 (576)
+...
T Consensus 518 f~~~ 521 (718)
T KOG2416|consen 518 FVRA 521 (718)
T ss_pred ecch
Confidence 6543
No 142
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=84.07 E-value=1.1 Score=48.59 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=63.3
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhcCCCee-E--EEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEee
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-D--VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~-~--VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~ 421 (576)
...|-+.+| +++.|-||+-+||..|-.-+ - |.|+.. +.-|=|||.|.+.|.|.+|..+-.++...+|-|.|..
T Consensus 280 kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457889999 99999999999999987433 2 677663 7789999999999999999999777888899999987
Q ss_pred cc
Q 008148 422 YR 423 (576)
Q Consensus 422 Ak 423 (576)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 64
No 143
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=80.84 E-value=2 Score=35.05 Aligned_cols=69 Identities=32% Similarity=0.541 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHhhccCC--CccccccchhhHHhhccchhcccccccccccccCCc-hHHHHHHHhhhccccccCCCCc
Q 008148 243 SLERLEAEITELLKQRRGF--PISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY-SLTKLLARLKNSIRLIDRPHGQ 319 (576)
Q Consensus 243 sle~le~ei~ell~~r~~~--p~~~~~lp~~y~~k~g~~lq~~g~~~esqR~gkaGy-s~~kll~rLkN~i~lidr~~GQ 319 (576)
+++.+..+|.+++.+.++. .+....++..|...| ..+.... =|| +|..|+..+++.+.+.++.+|+
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~~~----------yG~~~l~~ll~~~~~~~~i~~~~~g~ 70 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDPRD----------YGFSSLSELLESLPDVVEIEERQHGG 70 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--TCC----------TTSSSHHHHHHT-TTTEEEEEEECCC
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCccc----------cCCCcHHHHHHhCCCeEEEeeeCCCC
Confidence 4567888999999776643 677777888877777 5554332 266 5888887777888887888887
Q ss_pred chh
Q 008148 320 HSV 322 (576)
Q Consensus 320 ~~v 322 (576)
+..
T Consensus 71 ~~~ 73 (74)
T PF12872_consen 71 QVY 73 (74)
T ss_dssp C--
T ss_pred cCC
Confidence 643
No 144
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=80.60 E-value=0.88 Score=30.53 Aligned_cols=19 Identities=32% Similarity=0.952 Sum_probs=17.0
Q ss_pred cccccccc-cCCCCCCCccCC
Q 008148 194 VCHYFNKG-FCKHGNNCRYFH 213 (576)
Q Consensus 194 pC~YFarG-~Ck~G~sCrF~H 213 (576)
.|.|..+| .|+. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999998 9987 8999988
No 145
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=80.07 E-value=1.5 Score=45.41 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=60.4
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCC----CeeEcCeEEEEee
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGN----PHFVCGARVLVKP 421 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~ln----g~~I~Gr~I~Vk~ 421 (576)
.-|||.|| ...++.+.+..-|+.||+|...-+..| +.-+=++|.|...-.|.+|+...+ +...+++.+.|.+
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 68999999 788999999999999999997655554 667788999999999999988863 3445778887766
Q ss_pred cc
Q 008148 422 YR 423 (576)
Q Consensus 422 Ak 423 (576)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 54
No 146
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=79.11 E-value=2 Score=49.50 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=75.7
Q ss_pred ccCCCCcchhhhccccccccccCCCCCCCCCCCCCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEE
Q 008148 313 IDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFV 392 (576)
Q Consensus 313 idr~~GQ~~vvl~ed~~K~~~~r~~r~d~~~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFV 392 (576)
...|+.+..+|++.-++ |. ..--.+....+...++|||++ ...+..+-++.+....|-|..+.... |||.
T Consensus 9 a~~P~~~~~~~~~~~~p-~~---~p~qp~~~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~ 78 (668)
T KOG2253|consen 9 AGMPMMPQVPMVGNGVP-YV---VPIQPVFQPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFC 78 (668)
T ss_pred CCCCCCCCCccccCCcc-cc---cCCcccccCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hccc
Confidence 34455555556555555 22 111222344566789999999 78888888889999999998887765 9999
Q ss_pred EECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 393 TFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 393 tF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
.|........|+..+....++|..+.++.-
T Consensus 79 ~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 79 EFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred chhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 999999999999999999999998888764
No 147
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=77.61 E-value=8.8 Score=33.74 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=42.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCC
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP 409 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng 409 (576)
..+-.||+++ .+....||.++|+.||.|.=--| .-.-|||.....+.|..|+..+..
T Consensus 8 RdHVFhltFP--keWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLTFP--KEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE----TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEeCc--hHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3557889987 44578999999999999864444 456899999999999999888653
No 148
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=77.02 E-value=0.84 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=21.2
Q ss_pred cccccccccccCCCCCC-CccCCC
Q 008148 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (576)
Q Consensus 192 ~kpC~YFarG~Ck~G~s-CrF~Hg 214 (576)
.-+|.=|.||.|+||.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 56899999999999998 999996
No 149
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.62 E-value=6.9 Score=32.64 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHhcCC-----CeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 359 STFTEQDVSNYFSKFG-----PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 359 ~~~TEedLr~~FsqFG-----~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
..++..+|-.++..-+ .|-+|+| ...|.||+-.. +.|+.+++.+++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678888989888765 4446666 45699998554 5789999999999999999999875
No 150
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=75.18 E-value=1.1 Score=47.15 Aligned_cols=22 Identities=36% Similarity=1.144 Sum_probs=20.7
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008148 193 KVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
-.|-||-.|.|..|..|+|.|+
T Consensus 93 vvCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 93 VVCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHHhccCCCCCCcccccch
Confidence 3699999999999999999998
No 151
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=73.18 E-value=1.7 Score=45.86 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=21.8
Q ss_pred ccccccc-ccccCCCCCCCccCCCC
Q 008148 192 VKVCHYF-NKGFCKHGNNCRYFHGH 215 (576)
Q Consensus 192 ~kpC~YF-arG~Ck~G~sCrF~Hg~ 215 (576)
.-||.|| .+|.|+.|+.|.|.|..
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 5689999 88999999999999983
No 152
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=72.79 E-value=1.8 Score=46.36 Aligned_cols=23 Identities=39% Similarity=1.208 Sum_probs=13.3
Q ss_pred ccccccccc-ccCCCCCCCccCCC
Q 008148 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (576)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrF~Hg 214 (576)
.++|.||.. |.|.+|..|.|.|+
T Consensus 105 ~rec~ff~~~g~c~~~~~c~y~h~ 128 (325)
T KOG1040|consen 105 MRECKFFSLFGECTNGKDCPYLHG 128 (325)
T ss_pred cccccccccccccccccCCcccCC
Confidence 345555554 56666666666665
No 153
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=70.38 E-value=1.8 Score=43.99 Aligned_cols=23 Identities=35% Similarity=1.071 Sum_probs=19.6
Q ss_pred ccccccc-ccccCCCCCCCccCCC
Q 008148 192 VKVCHYF-NKGFCKHGNNCRYFHG 214 (576)
Q Consensus 192 ~kpC~YF-arG~Ck~G~sCrF~Hg 214 (576)
.--|.|| +.|.|.+|..|||+|.
T Consensus 206 avycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eeEEEEecCCCcccCCceeeeecc
Confidence 3458887 5699999999999997
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=63.94 E-value=4 Score=42.97 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEEeec
Q 008148 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (576)
Q Consensus 347 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~A 422 (576)
...+.|+|.+ .+.+.+.+...++.++|.+..+.+.. +.++|++.|.|...+.+..|+...-...+.++.+.....
T Consensus 87 ~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4679999999 88888888899999999988887766 278999999999999999999985555667766665544
Q ss_pred cccc
Q 008148 423 REKS 426 (576)
Q Consensus 423 k~K~ 426 (576)
..+.
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 4443
No 155
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=63.90 E-value=3.3 Score=43.66 Aligned_cols=27 Identities=41% Similarity=1.024 Sum_probs=23.6
Q ss_pred CCCCccccccccc-ccCCC-CCCCccCCC
Q 008148 188 PEFPVKVCHYFNK-GFCKH-GNNCRYFHG 214 (576)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~-G~sCrF~Hg 214 (576)
..+.-..|.+|.+ |.|+. |.+|+|.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 4567788999887 99999 999999888
No 156
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=61.48 E-value=3.5 Score=44.30 Aligned_cols=26 Identities=31% Similarity=0.848 Sum_probs=23.5
Q ss_pred CCCcccccccccccCCCCCCCccCCC
Q 008148 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 189 ~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
..+-..|+||.+|.|+.|..|-|.|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 45678999999999999999999985
No 157
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=54.06 E-value=13 Score=36.37 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=45.0
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHhc-CCCe---eEEEeecC------CCCceEEEEECCHHHHHHHHHhCCCeeEcC
Q 008148 348 SRQIYLTFPAESTFTEQDVSNYFSK-FGPV---QDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (576)
Q Consensus 348 ~rtIyVg~L~~~~~TEedLr~~Fsq-FG~V---~~VrI~~d------ksRGfGFVtF~~~e~A~~Al~~lng~~I~G 414 (576)
..+|.|.+| +..+||+++++..+. +|.- ..+.-..+ ..-.-|+|.|.+.+++..-...++|+.+.+
T Consensus 7 ~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 459999999 889999999997776 6666 23321111 123348999999999999999999987744
No 158
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=50.30 E-value=12 Score=44.63 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=62.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCee--EcCeEEEEeecc
Q 008148 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHF--VCGARVLVKPYR 423 (576)
Q Consensus 346 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~--I~Gr~I~Vk~Ak 423 (576)
|...+.++.+. .-..+..-|..+|++||.|.+.+..+ .-..|.|.|...+.|-.|++++.|.. ..|-..+|..|+
T Consensus 296 plqp~~~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENN-AVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhcc-cccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 44556777776 56778899999999999999999987 45579999999999999999987655 467788888776
Q ss_pred c
Q 008148 424 E 424 (576)
Q Consensus 424 ~ 424 (576)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 5
No 159
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=49.99 E-value=31 Score=39.64 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=48.8
Q ss_pred CcEEE-EcCCCCCCCCHHHHHHHHhc--CCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhC--CCeeEcCeEEE
Q 008148 348 SRQIY-LTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG--NPHFVCGARVL 418 (576)
Q Consensus 348 ~rtIy-Vg~L~~~~~TEedLr~~Fsq--FG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~l--ng~~I~Gr~I~ 418 (576)
.|+|. +.-| +.++-+|+|+.+|.- +=++.+|..-. .- -=||||++..+|+.|+..+ .-..|.|+.|.
T Consensus 174 kRcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~--N~-nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAH--ND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeee--cC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34444 4567 778889999999974 67888887754 22 2489999999999998876 23556666554
No 160
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=47.83 E-value=7.4 Score=39.16 Aligned_cols=25 Identities=28% Similarity=0.961 Sum_probs=19.9
Q ss_pred CCccccccc-ccccCCCCCCCccCCC
Q 008148 190 FPVKVCHYF-NKGFCKHGNNCRYFHG 214 (576)
Q Consensus 190 ~~~kpC~YF-arG~Ck~G~sCrF~Hg 214 (576)
+-.-.|+=| ..|||--|.+|+|+|-
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhh
Confidence 344567766 4599999999999997
No 161
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=46.11 E-value=10 Score=40.07 Aligned_cols=25 Identities=36% Similarity=0.984 Sum_probs=22.9
Q ss_pred CCcccccccccccCCCCCCCccCCC
Q 008148 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
-.--+|++|-+|.|+.|..|.|+|+
T Consensus 102 ~s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 102 SSSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred cCCcccchhccccCcCCCccccccC
Confidence 3566999999999999999999999
No 162
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=43.32 E-value=11 Score=40.36 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=24.5
Q ss_pred CCCCCCCCcccccccccccCCCCCCCccCCC
Q 008148 184 SPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 184 s~~~~~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
+..++...+-=|+=|.||.|.| .+|||+|.
T Consensus 63 ~~~V~~g~v~aC~Ds~kgrCsR-~nCkylHp 92 (331)
T KOG2494|consen 63 NCQVSNGRVIACFDSQKGRCSR-ENCKYLHP 92 (331)
T ss_pred CCCccCCeEEEEeccccCccCc-ccceecCC
Confidence 3445666678899999999999 55999998
No 163
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=41.32 E-value=1.6e+02 Score=26.84 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=48.7
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHhcCC-CeeEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCeeEcC
Q 008148 349 RQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (576)
Q Consensus 349 rtIyVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~d--ksRGfGFVtF~~~e~A~~Al~~lng~~I~G 414 (576)
..+-+..+ ++.++-++|..+.+.+- .|..++|++| ..|=.+.+.|.+.+.|+.=....||..++.
T Consensus 14 ~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444444 67777788876666554 6678899997 456678999999999999999999877644
No 164
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=40.70 E-value=10 Score=38.68 Aligned_cols=23 Identities=48% Similarity=1.096 Sum_probs=19.7
Q ss_pred cccccccccccCCCCCCCccCCCC
Q 008148 192 VKVCHYFNKGFCKHGNNCRYFHGH 215 (576)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrF~Hg~ 215 (576)
..-|.||--|.|.+ -+|||+|=+
T Consensus 261 ipacryfllgkcnn-pncryvhih 283 (377)
T KOG1492|consen 261 IPACRYFLLGKCNN-PNCRYVHIH 283 (377)
T ss_pred cchhhhhhhccCCC-CCceEEEEe
Confidence 34599999999998 889999963
No 165
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=39.66 E-value=15 Score=39.16 Aligned_cols=26 Identities=35% Similarity=0.897 Sum_probs=23.7
Q ss_pred CCCccccccccc-ccCCCCCCCccCCC
Q 008148 189 EFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (576)
Q Consensus 189 ~~~~kpC~YFar-G~Ck~G~sCrF~Hg 214 (576)
.|.-+||.-+.+ |||.-|.-|.|.||
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred ccccCCccchhhcccCccccccccccC
Confidence 566799999887 99999999999999
No 166
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=38.18 E-value=6.7 Score=40.13 Aligned_cols=64 Identities=30% Similarity=0.377 Sum_probs=52.4
Q ss_pred CcEEEEcC----CCCCCCCHHHHHHHHhcCCCeeEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCeeE
Q 008148 348 SRQIYLTF----PAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (576)
Q Consensus 348 ~rtIyVg~----L~~~~~TEedLr~~FsqFG~V~~VrI~~d---ksRGfGFVtF~~~e~A~~Al~~lng~~I 412 (576)
..|++-|+ | +..++++.+...|++-|+|..+++..+ +.|.++||++.-...+-.++....+...
T Consensus 80 q~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 34666666 6 678899999999999999999999985 7899999999988888888777544443
No 167
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=36.04 E-value=2.2e+02 Score=23.80 Aligned_cols=56 Identities=11% Similarity=0.174 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCeEEEE
Q 008148 359 STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (576)
Q Consensus 359 ~~~TEedLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~V 419 (576)
-.++-+|++..+.+|+-. +| ..| .-|| ||.|.+.++|+++....++..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I--~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RI--RDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eE--Eec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467889999999999853 33 222 3443 88999999999999999999998888765
No 168
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=35.79 E-value=54 Score=27.26 Aligned_cols=19 Identities=16% Similarity=0.565 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCeeEEEee
Q 008148 364 QDVSNYFSKFGPVQDVRIP 382 (576)
Q Consensus 364 edLr~~FsqFG~V~~VrI~ 382 (576)
.+||++|++.|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999888773
No 169
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=34.72 E-value=14 Score=38.05 Aligned_cols=22 Identities=36% Similarity=0.964 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008148 193 KVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
-.|-.|.-|.|..|..|+|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 3699999999999999999999
No 170
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.18 E-value=1.3e+02 Score=34.85 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=59.0
Q ss_pred CCCCCcEEEEcCCCCC-CCCHHHHHHHHhcC----CCeeEEEeecC-------------CC-------------------
Q 008148 344 IVAGSRQIYLTFPAES-TFTEQDVSNYFSKF----GPVQDVRIPCQ-------------QK------------------- 386 (576)
Q Consensus 344 ~~~~~rtIyVg~L~~~-~~TEedLr~~FsqF----G~V~~VrI~~d-------------ks------------------- 386 (576)
.+..+++|-|-|+ +| .+..+||--+|+.| |.|.+|.|..- ..
T Consensus 170 ~~~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 170 LGEETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred cccccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 3456789999999 88 57789999999876 68999987541 01
Q ss_pred -------------------CceEEEEECCHHHHHHHHHhCCCeeEcCeEEEE
Q 008148 387 -------------------RMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (576)
Q Consensus 387 -------------------RGfGFVtF~~~e~A~~Al~~lng~~I~Gr~I~V 419 (576)
-=||.|+|.+.++|.++++.-+|..+...-..+
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 127999999999999999999999886654444
No 171
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=25.72 E-value=45 Score=37.99 Aligned_cols=23 Identities=39% Similarity=0.967 Sum_probs=18.0
Q ss_pred ccccc-ccccCCCCCCCccCCCCC
Q 008148 194 VCHYF-NKGFCKHGNNCRYFHGHP 216 (576)
Q Consensus 194 pC~YF-arG~Ck~G~sCrF~Hg~~ 216 (576)
-|-.| +.|+|..|-+|||+-++.
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred ccceeeccccCCccceeehhhccc
Confidence 36665 569999999999977644
No 172
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=25.68 E-value=40 Score=33.66 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=53.0
Q ss_pred EEEEcCCCCCCCCH----HHHHHHHhcCCCeeEEEeecCCCCceEEEEECCHHHHHHHHHhCCCeeEcCe-EEEEeeccc
Q 008148 350 QIYLTFPAESTFTE----QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYRE 424 (576)
Q Consensus 350 tIyVg~L~~~~~TE----edLr~~FsqFG~V~~VrI~~dksRGfGFVtF~~~e~A~~Al~~lng~~I~Gr-~I~Vk~Ak~ 424 (576)
++.+..+....+++ ....++|.+|-+.+-.++.+ +.++--|.|.+++.|..|.-.+....+.|. .++...+++
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 34555553333333 34455667777766555554 666777899999999999999999999998 888888776
Q ss_pred cch
Q 008148 425 KSR 427 (576)
Q Consensus 425 K~k 427 (576)
-..
T Consensus 90 ~~~ 92 (193)
T KOG4019|consen 90 GHP 92 (193)
T ss_pred CCc
Confidence 443
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=25.01 E-value=34 Score=35.73 Aligned_cols=27 Identities=26% Similarity=0.787 Sum_probs=23.8
Q ss_pred CCCCcccccccccccCCCCCCCccCCC
Q 008148 188 PEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (576)
Q Consensus 188 ~~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (576)
..+--.+|-.|-++.|.+|..|-|.|-
T Consensus 148 T~~rea~C~~~e~~~C~rG~~CnFmH~ 174 (260)
T KOG2202|consen 148 TDFREAICGQFERTECSRGGACNFMHV 174 (260)
T ss_pred CchhhhhhcccccccCCCCCcCcchhh
Confidence 455567899999999999999999996
No 174
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.73 E-value=37 Score=36.95 Aligned_cols=26 Identities=42% Similarity=0.930 Sum_probs=23.6
Q ss_pred CCCccccccccc--ccCCCCCCCccCCC
Q 008148 189 EFPVKVCHYFNK--GFCKHGNNCRYFHG 214 (576)
Q Consensus 189 ~~~~kpC~YFar--G~Ck~G~sCrF~Hg 214 (576)
+...|.|.||.+ |.|..|+.|-|.|-
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~ 273 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHL 273 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCccccccc
Confidence 567899999987 89999999999996
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=20.45 E-value=1.3e+02 Score=26.51 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=23.3
Q ss_pred EEEEECCHHHHHHHHHhCC-CeeEcCeEEE--Eeecc
Q 008148 390 GFVTFVFAETVKQILAKGN-PHFVCGARVL--VKPYR 423 (576)
Q Consensus 390 GFVtF~~~e~A~~Al~~ln-g~~I~Gr~I~--Vk~Ak 423 (576)
|.|||.+++.|++.+.... ...+++..+. |.++.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~ 37 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVT 37 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEe
Confidence 6899999999999998842 2344555444 44443
No 176
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=37 Score=36.20 Aligned_cols=26 Identities=23% Similarity=1.048 Sum_probs=20.7
Q ss_pred CCCccccccc-ccccCCCCCCCccCCC
Q 008148 189 EFPVKVCHYF-NKGFCKHGNNCRYFHG 214 (576)
Q Consensus 189 ~~~~kpC~YF-arG~Ck~G~sCrF~Hg 214 (576)
.+..-+|+=| --|||..|-+|+|+|-
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhh
Confidence 4455678855 4599999999999996
No 177
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.29 E-value=86 Score=32.70 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=26.0
Q ss_pred EEEEECCHHHHHHHHHhCCCeeEcCeEEEEeeccccch
Q 008148 390 GFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSR 427 (576)
Q Consensus 390 GFVtF~~~e~A~~Al~~lng~~I~Gr~I~Vk~Ak~K~k 427 (576)
|||||++..+|..|++....+ .++++.|..|-+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCccc
Confidence 799999999999999964332 235567777665543
Done!