BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008149
         (576 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana
           GN=DRM2 PE=1 SV=1
          Length = 626

 Score =  296 bits (758), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)

Query: 240 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 299
           RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query: 300 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 359
             NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L    
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query: 360 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 417
                 +  QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query: 418 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 477
           +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query: 478 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 537
            NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query: 538 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 576
           +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct: 596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624



 Score = 38.9 bits (89), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 5   KEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENF 62
           +++PN  + G  I    SL+ M FS  E   A+++ G++  + EL DF+ AAQ++  F
Sbjct: 186 EKDPNSNENGSKIR---SLVKMGFSELEASLAVERCGENVDIAELTDFLCAAQMAREF 240



 Score = 37.4 bits (85), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 11/119 (9%)

Query: 23  LLMMNFSVNEVDFALDKLGKD---APVYELVDFITAAQISENFEKE-------TDDAPHD 72
            L M F   +V  A+ + G+D   A    L+    A ++    E+E       +DD  + 
Sbjct: 118 FLAMGFDEEKVVKAIQEHGEDNMEAIANALLSCPEAKKLPAAVEEEDGIDWSSSDDDTNY 177

Query: 73  NDGTN-EDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI 130
            D  N +D+ D            L++MGFSE + SLA+E+ G    I+EL D + + Q+
Sbjct: 178 TDMLNSDDEKDPNSNENGSKIRSLVKMGFSELEASLAVERCGENVDIAELTDFLCAAQM 236


>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana
           GN=DRM1 PE=4 SV=2
          Length = 624

 Score =  277 bits (709), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 165/504 (32%), Positives = 256/504 (50%), Gaps = 69/504 (13%)

Query: 73  NDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFL 132
           N+ +NED+          I   L++MG+     ++AIE+ G    + E+ D I + Q+  
Sbjct: 186 NNSSNEDR----------ILQALIKMGYLREDAAIAIERCGEDASMEEVVDFICAAQM-- 233

Query: 133 DTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDF 192
               +R +D +     Y  PD   +   MN ++  R                        
Sbjct: 234 ----ARQFDEI-----YAEPD---KKELMNNNKKRRTYT--------------------- 260

Query: 193 QENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYF 252
                 + P++ + D   S         V PN     M +         I  +   PP+F
Sbjct: 261 ------ETPRKPNTDQLISLPKEMIGFGV-PNHPGLMMHRPV------PIPDIARGPPFF 307

Query: 253 FYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPM 312
           +Y NV       W K+S  LY + PEFV+S++F A +R+ GY+HNLP  NRF I P    
Sbjct: 308 YYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIHNLPIQNRFQIQPPQHN 367

Query: 313 TIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILH 372
           TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+  + L    G      Q+ +++
Sbjct: 368 TIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALERYDGETPLDVQKWVMY 426

Query: 373 RSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH 432
             +K NLVWVG  KL P+D + +E +LG+P +HT+  G S T R +SL + FQ DT+ YH
Sbjct: 427 ECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDRYKSLGNSFQVDTVAYH 486

Query: 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ 492
           LSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+S+E S+ NR IL+ +WE + Q
Sbjct: 487 LSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRNILRSFWEQTNQ 546

Query: 493 TGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDN 552
            G L + +D+Q L     E L+ + G  D VI  +     P +     ++  ++    ++
Sbjct: 547 KGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNNLAGGNRHHRVGLGGEH 601

Query: 553 LPDFDFSLYYEFVRVVQRVRSMKR 576
                 SL++++ R+++ VR   R
Sbjct: 602 -----SSLFFDYCRILEAVRRKAR 620



 Score = 37.4 bits (85), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 22  SLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEK 64
           +L+ M +   +   A+++ G+DA + E+VDFI AAQ++  F++
Sbjct: 197 ALIKMGYLREDAAIAIERCGEDASMEEVVDFICAAQMARQFDE 239


>sp|Q5ZKH8|ODR4_CHICK Protein odr-4 homolog OS=Gallus gallus GN=ODR4 PE=2 SV=1
          Length = 446

 Score = 38.9 bits (89), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 381 WVGAYKLGPVDPEHIELILGY--PSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 438
           +V    +G   P+   +I     P    Q  GN+  ++L+S+   + T     H S +  
Sbjct: 25  YVTGLLIGQCSPQRDYIIRAARTPPKEEQKEGNTSPSKLDSIDEEWFT----AHASQISR 80

Query: 439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 484
           M PGGL +LSVF  I   E++        K + SIE S T RR+ K
Sbjct: 81  MLPGGLLVLSVFI-IATPELSKDCQNTLRKLIFSIEKSLTKRRLWK 125


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,543,532
Number of Sequences: 539616
Number of extensions: 9126452
Number of successful extensions: 24770
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 24740
Number of HSP's gapped (non-prelim): 33
length of query: 576
length of database: 191,569,459
effective HSP length: 123
effective length of query: 453
effective length of database: 125,196,691
effective search space: 56714101023
effective search space used: 56714101023
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)