Query 008149
Match_columns 576
No_of_seqs 220 out of 1018
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 20:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0270 Dcm Site-specific DNA 99.9 5.1E-25 1.1E-29 228.8 8.5 109 442-574 2-110 (328)
2 PF00145 DNA_methylase: C-5 cy 99.9 6.8E-25 1.5E-29 220.4 7.6 105 444-575 1-105 (335)
3 PRK10458 DNA cytosine methylas 99.9 7.9E-23 1.7E-27 222.0 10.7 125 443-575 88-222 (467)
4 TIGR00675 dcm DNA-methyltransf 99.9 2.5E-22 5.5E-27 207.8 8.7 103 446-575 1-103 (315)
5 cd00315 Cyt_C5_DNA_methylase C 99.9 2.8E-22 6.2E-27 203.7 8.7 106 444-575 1-106 (275)
6 KOG0919 C-5 cytosine-specific 99.3 5E-12 1.1E-16 127.1 6.9 111 442-574 2-112 (338)
7 cd00315 Cyt_C5_DNA_methylase C 99.2 7.2E-12 1.6E-16 127.9 6.2 157 247-436 102-273 (275)
8 PRK10458 DNA cytosine methylas 98.6 3E-08 6.5E-13 108.9 4.8 57 384-440 398-456 (467)
9 PF00145 DNA_methylase: C-5 cy 98.4 4.7E-08 1E-12 98.7 0.8 55 381-437 280-334 (335)
10 TIGR00675 dcm DNA-methyltransf 98.0 1.6E-06 3.6E-11 90.5 0.7 178 246-430 98-309 (315)
11 PF13659 Methyltransf_26: Meth 97.9 3.1E-05 6.6E-10 67.5 6.7 83 443-533 1-84 (117)
12 COG0270 Dcm Site-specific DNA 97.6 2.6E-05 5.7E-10 81.8 2.4 181 246-438 106-322 (328)
13 TIGR03704 PrmC_rel_meth putati 97.5 0.0001 2.2E-09 74.8 4.0 82 443-534 87-168 (251)
14 PF03602 Cons_hypoth95: Conser 97.4 0.00018 3.8E-09 70.1 5.4 91 433-529 33-124 (183)
15 COG2520 Predicted methyltransf 97.3 0.00029 6.2E-09 75.1 6.0 95 424-529 171-266 (341)
16 TIGR00095 RNA methyltransferas 97.3 0.00048 1E-08 67.2 6.9 83 442-530 49-132 (189)
17 PF02475 Met_10: Met-10+ like- 97.3 0.00046 9.9E-09 68.5 6.6 81 440-530 99-180 (200)
18 PRK10909 rsmD 16S rRNA m(2)G96 97.2 0.00052 1.1E-08 67.9 5.7 77 443-528 54-130 (199)
19 PRK15128 23S rRNA m(5)C1962 me 97.2 0.00087 1.9E-08 72.7 7.6 82 442-529 220-303 (396)
20 PF09445 Methyltransf_15: RNA 97.0 0.0008 1.7E-08 65.0 4.8 82 445-535 2-85 (163)
21 PHA03412 putative methyltransf 96.9 0.0012 2.7E-08 67.4 5.7 122 388-533 5-128 (241)
22 PF13847 Methyltransf_31: Meth 96.9 0.0025 5.4E-08 58.8 6.6 84 442-533 3-87 (152)
23 smart00165 UBA Ubiquitin assoc 96.8 0.002 4.4E-08 46.7 4.5 35 90-126 3-37 (37)
24 TIGR01177 conserved hypothetic 96.8 0.0061 1.3E-07 64.0 9.9 82 441-533 181-262 (329)
25 TIGR02085 meth_trns_rumB 23S r 96.8 0.002 4.3E-08 69.1 5.8 76 443-528 234-309 (374)
26 PRK03522 rumB 23S rRNA methylu 96.8 0.0029 6.3E-08 66.1 6.8 81 443-533 174-254 (315)
27 PF05175 MTS: Methyltransferas 96.7 0.0048 1E-07 58.6 7.4 77 442-528 31-107 (170)
28 TIGR00446 nop2p NOL1/NOP2/sun 96.7 0.0039 8.4E-08 63.6 7.0 85 442-534 71-155 (264)
29 PF00627 UBA: UBA/TS-N domain; 96.6 0.0039 8.4E-08 45.6 4.5 35 89-125 3-37 (37)
30 PRK09328 N5-glutamine S-adenos 96.5 0.0084 1.8E-07 60.2 8.1 82 442-533 108-189 (275)
31 PHA03411 putative methyltransf 96.4 0.0059 1.3E-07 63.7 6.2 96 421-534 46-141 (279)
32 PRK05031 tRNA (uracil-5-)-meth 96.4 0.0051 1.1E-07 65.8 5.8 82 444-529 208-298 (362)
33 cd00194 UBA Ubiquitin Associat 96.4 0.0073 1.6E-07 43.9 4.8 35 90-126 3-37 (38)
34 TIGR00537 hemK_rel_arch HemK-r 96.3 0.013 2.8E-07 55.7 7.7 77 443-533 20-96 (179)
35 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.011 2.3E-07 68.7 8.1 83 442-533 538-622 (702)
36 TIGR00479 rumA 23S rRNA (uraci 96.3 0.012 2.6E-07 63.9 8.0 83 442-531 292-374 (431)
37 PRK14904 16S rRNA methyltransf 96.3 0.0089 1.9E-07 65.4 7.1 84 442-535 250-334 (445)
38 smart00650 rADc Ribosomal RNA 96.2 0.01 2.3E-07 56.0 6.6 76 442-530 13-88 (169)
39 COG0742 N6-adenine-specific me 96.2 0.018 3.8E-07 57.0 7.8 92 432-530 33-125 (187)
40 KOG0944 Ubiquitin-specific pro 96.2 0.019 4.2E-07 65.5 9.1 97 18-129 573-674 (763)
41 COG2263 Predicted RNA methylas 96.2 0.014 3.1E-07 58.0 7.1 72 442-528 45-117 (198)
42 PRK10901 16S rRNA methyltransf 96.1 0.015 3.2E-07 63.5 7.9 84 442-533 244-327 (427)
43 PRK13168 rumA 23S rRNA m(5)U19 96.1 0.012 2.7E-07 64.3 7.3 85 442-533 297-381 (443)
44 PRK14902 16S rRNA methyltransf 96.1 0.014 3.1E-07 63.7 7.4 85 442-534 250-335 (444)
45 TIGR03533 L3_gln_methyl protei 96.0 0.026 5.7E-07 58.4 8.7 81 443-533 122-203 (284)
46 PRK11805 N5-glutamine S-adenos 95.9 0.023 4.9E-07 59.7 7.6 80 444-533 135-215 (307)
47 PRK14967 putative methyltransf 95.9 0.016 3.6E-07 57.2 6.3 78 442-531 36-113 (223)
48 PRK14901 16S rRNA methyltransf 95.8 0.022 4.8E-07 62.2 7.4 89 442-534 252-340 (434)
49 PF00627 UBA: UBA/TS-N domain; 95.8 0.016 3.5E-07 42.4 4.2 36 16-53 2-37 (37)
50 cd02440 AdoMet_MTases S-adenos 95.7 0.025 5.5E-07 45.4 5.8 79 445-532 1-79 (107)
51 smart00165 UBA Ubiquitin assoc 95.7 0.016 3.5E-07 41.9 4.1 35 18-54 3-37 (37)
52 PF10672 Methyltrans_SAM: S-ad 95.7 0.039 8.4E-07 57.8 8.3 83 442-533 123-207 (286)
53 KOG0919 C-5 cytosine-specific 95.7 0.0084 1.8E-07 61.7 3.3 51 386-436 286-336 (338)
54 PF05958 tRNA_U5-meth_tr: tRNA 95.7 0.014 3.1E-07 62.2 5.2 81 445-528 199-287 (352)
55 PRK04338 N(2),N(2)-dimethylgua 95.6 0.021 4.5E-07 61.9 6.4 76 443-528 58-134 (382)
56 cd00194 UBA Ubiquitin Associat 95.6 0.024 5.2E-07 41.2 4.7 35 18-54 3-37 (38)
57 TIGR03534 RF_mod_PrmC protein- 95.6 0.027 5.8E-07 55.5 6.5 82 442-533 87-168 (251)
58 COG2265 TrmA SAM-dependent met 95.6 0.014 3.1E-07 64.2 5.0 78 443-528 294-371 (432)
59 PRK14903 16S rRNA methyltransf 95.6 0.031 6.8E-07 61.3 7.4 86 442-535 237-323 (431)
60 COG1092 Predicted SAM-dependen 95.5 0.062 1.4E-06 58.7 9.3 106 443-574 218-325 (393)
61 TIGR02143 trmA_only tRNA (urac 95.4 0.019 4.2E-07 61.2 5.2 84 444-530 199-290 (353)
62 TIGR02987 met_A_Alw26 type II 95.3 0.019 4.1E-07 64.0 4.6 88 442-533 31-126 (524)
63 PRK14896 ksgA 16S ribosomal RN 95.2 0.037 7.9E-07 56.3 6.2 96 418-530 5-102 (258)
64 TIGR02752 MenG_heptapren 2-hep 94.9 0.091 2E-06 51.5 7.6 82 442-532 45-127 (231)
65 TIGR00308 TRM1 tRNA(guanine-26 94.6 0.063 1.4E-06 58.1 6.3 77 443-528 45-123 (374)
66 TIGR00563 rsmB ribosomal RNA s 94.6 0.11 2.3E-06 56.8 8.0 85 442-535 238-325 (426)
67 TIGR00536 hemK_fam HemK family 94.6 0.078 1.7E-06 54.6 6.6 80 444-533 116-196 (284)
68 PF01170 UPF0020: Putative RNA 94.5 0.04 8.7E-07 53.3 4.1 103 442-570 28-139 (179)
69 PRK00274 ksgA 16S ribosomal RN 94.3 0.11 2.4E-06 53.3 7.1 93 420-528 20-114 (272)
70 COG5207 UBP14 Isopeptidase T [ 94.3 0.17 3.6E-06 56.8 8.7 93 19-127 561-658 (749)
71 PRK14968 putative methyltransf 94.3 0.14 3E-06 48.1 7.1 78 442-531 23-102 (188)
72 COG4123 Predicted O-methyltran 94.2 0.076 1.6E-06 54.7 5.6 101 421-531 26-127 (248)
73 TIGR00755 ksgA dimethyladenosi 94.2 0.09 2E-06 53.1 6.1 75 442-528 29-103 (253)
74 PRK09489 rsmC 16S ribosomal RN 94.2 0.1 2.2E-06 55.8 6.7 98 418-529 170-271 (342)
75 PF12847 Methyltransf_18: Meth 94.1 0.16 3.5E-06 43.6 6.7 74 443-527 2-78 (112)
76 TIGR00080 pimt protein-L-isoas 94.1 0.16 3.5E-06 50.0 7.5 83 442-532 77-159 (215)
77 TIGR00406 prmA ribosomal prote 94.1 0.1 2.2E-06 54.1 6.3 46 442-489 159-204 (288)
78 TIGR02469 CbiT precorrin-6Y C5 94.1 0.2 4.2E-06 43.5 7.2 76 442-525 19-94 (124)
79 TIGR02021 BchM-ChlM magnesium 94.1 0.15 3.2E-06 50.0 7.2 54 432-488 45-98 (219)
80 KOG3420 Predicted RNA methylas 94.1 0.075 1.6E-06 51.4 4.7 76 442-528 48-123 (185)
81 TIGR00138 gidB 16S rRNA methyl 93.9 0.13 2.9E-06 49.8 6.2 75 443-527 43-117 (181)
82 COG2890 HemK Methylase of poly 93.8 0.13 2.7E-06 53.6 6.3 78 445-533 113-190 (280)
83 PF09288 UBA_3: Fungal ubiquit 93.6 0.077 1.7E-06 43.0 3.3 42 13-54 6-54 (55)
84 PRK11207 tellurite resistance 93.5 0.21 4.5E-06 48.7 7.0 74 443-528 31-104 (197)
85 PF02384 N6_Mtase: N-6 DNA Met 93.5 0.063 1.4E-06 55.4 3.5 108 418-532 23-138 (311)
86 PRK14966 unknown domain/N5-glu 93.3 0.16 3.4E-06 56.0 6.4 79 442-529 251-329 (423)
87 PRK11036 putative S-adenosyl-L 93.0 0.17 3.8E-06 50.9 5.7 79 441-529 43-122 (255)
88 PRK00517 prmA ribosomal protei 93.0 0.17 3.6E-06 51.2 5.5 52 435-488 112-163 (250)
89 PRK07402 precorrin-6B methylas 92.9 0.35 7.7E-06 46.7 7.5 47 442-489 40-86 (196)
90 PTZ00338 dimethyladenosine tra 92.9 0.18 4E-06 52.8 5.8 98 418-530 12-112 (294)
91 PLN02396 hexaprenyldihydroxybe 92.8 0.28 6E-06 52.2 7.1 75 442-527 131-206 (322)
92 PRK08287 cobalt-precorrin-6Y C 92.8 0.33 7.2E-06 46.4 7.1 47 442-489 31-77 (187)
93 PRK00312 pcm protein-L-isoaspa 92.7 0.3 6.6E-06 47.7 6.8 80 442-532 78-157 (212)
94 PRK07580 Mg-protoporphyrin IX 92.6 0.31 6.6E-06 47.5 6.7 45 442-489 63-107 (230)
95 KOG2904 Predicted methyltransf 92.6 0.19 4.1E-06 52.9 5.4 83 444-530 150-233 (328)
96 COG2264 PrmA Ribosomal protein 92.3 0.28 6E-06 51.9 6.2 55 433-489 153-207 (300)
97 PF07499 RuvA_C: RuvA, C-termi 92.2 0.26 5.7E-06 38.1 4.5 35 90-124 5-41 (47)
98 PLN02244 tocopherol O-methyltr 92.1 0.48 1E-05 50.3 7.9 74 442-526 118-193 (340)
99 KOG2730 Methylase [General fun 91.9 0.21 4.6E-06 51.1 4.6 104 425-535 77-181 (263)
100 PRK00377 cbiT cobalt-precorrin 91.8 0.4 8.6E-06 46.6 6.3 78 442-527 40-119 (198)
101 PRK15001 SAM-dependent 23S rib 91.8 0.33 7.2E-06 52.8 6.3 75 444-529 230-308 (378)
102 PRK01544 bifunctional N5-gluta 91.6 0.4 8.7E-06 53.9 6.9 81 443-533 139-220 (506)
103 COG2227 UbiG 2-polyprenyl-3-me 91.5 0.41 8.8E-06 49.3 6.2 72 442-525 59-130 (243)
104 PLN02585 magnesium protoporphy 91.5 0.41 9E-06 50.7 6.5 43 442-487 144-186 (315)
105 PRK00107 gidB 16S rRNA methylt 91.4 0.48 1E-05 46.5 6.4 79 438-526 41-119 (187)
106 PF06325 PrmA: Ribosomal prote 91.1 0.35 7.6E-06 51.0 5.4 56 433-490 152-207 (295)
107 COG0116 Predicted N6-adenine-s 90.9 0.98 2.1E-05 49.4 8.8 109 436-571 186-333 (381)
108 KOG1227 Putative methyltransfe 90.4 0.25 5.5E-06 52.5 3.6 54 433-489 186-240 (351)
109 TIGR00478 tly hemolysin TlyA f 90.2 0.53 1.2E-05 47.8 5.7 75 442-526 75-150 (228)
110 TIGR00477 tehB tellurite resis 90.1 0.9 1.9E-05 44.2 7.0 77 443-532 31-107 (195)
111 PRK00121 trmB tRNA (guanine-N( 90.1 0.57 1.2E-05 45.9 5.6 82 442-530 40-122 (202)
112 PF00398 RrnaAD: Ribosomal RNA 90.0 0.38 8.1E-06 49.1 4.5 99 419-529 7-107 (262)
113 KOG2561 Adaptor protein NUB1, 90.0 1.4 2.9E-05 49.1 8.8 86 22-128 381-467 (568)
114 TIGR03840 TMPT_Se_Te thiopurin 89.8 0.69 1.5E-05 46.2 6.1 40 441-483 33-72 (213)
115 PRK11783 rlmL 23S rRNA m(2)G24 89.7 0.83 1.8E-05 53.3 7.5 54 469-528 258-312 (702)
116 PRK13942 protein-L-isoaspartat 89.6 0.97 2.1E-05 44.7 6.9 77 441-526 75-152 (212)
117 PRK13944 protein-L-isoaspartat 89.3 1.2 2.6E-05 43.7 7.3 82 442-532 72-155 (205)
118 PRK11188 rrmJ 23S rRNA methylt 89.2 1 2.2E-05 44.7 6.7 74 441-526 50-124 (209)
119 TIGR02072 BioC biotin biosynth 89.2 0.54 1.2E-05 45.4 4.7 77 443-532 35-111 (240)
120 PRK12335 tellurite resistance 88.8 1 2.2E-05 46.5 6.6 43 444-489 122-164 (287)
121 PF07499 RuvA_C: RuvA, C-termi 88.8 0.96 2.1E-05 34.9 4.9 39 16-54 3-43 (47)
122 PF13649 Methyltransf_25: Meth 88.7 0.88 1.9E-05 39.0 5.1 78 446-533 1-82 (101)
123 PRK10742 putative methyltransf 88.5 1.7 3.6E-05 45.1 7.8 85 444-531 90-176 (250)
124 COG1041 Predicted DNA modifica 88.3 1.3 2.7E-05 48.0 7.0 77 442-529 197-274 (347)
125 PRK10258 biotin biosynthesis p 88.0 1.1 2.3E-05 44.9 6.0 86 425-528 27-112 (251)
126 PF02005 TRM: N2,N2-dimethylgu 87.9 0.57 1.2E-05 50.9 4.3 63 424-489 32-96 (377)
127 PTZ00098 phosphoethanolamine N 87.9 1.5 3.2E-05 44.9 7.1 72 393-486 22-94 (263)
128 PRK13255 thiopurine S-methyltr 87.8 1.2 2.5E-05 44.7 6.2 40 441-483 36-75 (218)
129 PRK05134 bifunctional 3-demeth 87.8 1.2 2.6E-05 43.8 6.2 44 442-488 48-91 (233)
130 PLN02233 ubiquinone biosynthes 87.8 1.8 3.9E-05 44.3 7.6 78 442-528 73-154 (261)
131 TIGR00091 tRNA (guanine-N(7)-) 87.8 1.6 3.5E-05 42.4 7.0 82 443-530 17-98 (194)
132 TIGR01934 MenG_MenH_UbiE ubiqu 87.5 1.5 3.2E-05 42.0 6.5 74 442-525 39-112 (223)
133 PRK05785 hypothetical protein; 87.4 1.3 2.9E-05 44.3 6.3 73 442-532 51-123 (226)
134 PRK00811 spermidine synthase; 87.2 1 2.2E-05 46.7 5.5 78 441-527 75-158 (283)
135 PRK11933 yebU rRNA (cytosine-C 87.2 1.3 2.9E-05 49.5 6.7 86 442-535 113-199 (470)
136 PLN02781 Probable caffeoyl-CoA 86.7 1.7 3.7E-05 43.9 6.6 92 430-527 57-152 (234)
137 TIGR01983 UbiG ubiquinone bios 86.6 1.5 3.3E-05 42.6 6.0 43 442-487 45-87 (224)
138 PF01555 N6_N4_Mtase: DNA meth 86.2 0.85 1.8E-05 43.5 4.0 40 441-483 190-229 (231)
139 PRK00216 ubiE ubiquinone/menaq 86.0 2.1 4.4E-05 41.5 6.6 76 443-526 52-128 (239)
140 PRK01683 trans-aconitate 2-met 85.3 1.9 4.1E-05 43.1 6.2 74 442-530 31-104 (258)
141 PF01189 Nol1_Nop2_Fmu: NOL1/N 85.2 2.1 4.5E-05 44.6 6.5 87 443-535 86-172 (283)
142 PLN02672 methionine S-methyltr 85.1 1.3 2.8E-05 54.3 5.6 46 443-489 119-164 (1082)
143 PF02086 MethyltransfD12: D12 84.9 0.53 1.2E-05 46.8 2.0 52 433-487 9-62 (260)
144 PRK13943 protein-L-isoaspartat 84.8 2.5 5.3E-05 45.1 7.0 77 442-526 80-156 (322)
145 PRK14103 trans-aconitate 2-met 84.6 1.9 4.2E-05 43.3 5.9 74 442-532 29-102 (255)
146 TIGR02081 metW methionine bios 83.6 1.7 3.6E-05 42.0 4.7 81 436-532 7-88 (194)
147 PRK08317 hypothetical protein; 83.1 3.7 8E-05 39.4 6.9 45 442-486 19-63 (241)
148 PRK04148 hypothetical protein; 83.1 2.4 5.2E-05 40.1 5.4 69 443-528 17-86 (134)
149 PF03848 TehB: Tellurite resis 83.1 3.2 6.9E-05 41.4 6.5 41 443-486 31-71 (192)
150 PF01209 Ubie_methyltran: ubiE 82.9 2.7 5.8E-05 42.7 6.0 77 442-527 47-124 (233)
151 COG2226 UbiE Methylase involve 82.9 3.5 7.5E-05 42.4 6.9 83 442-533 51-133 (238)
152 PRK11727 23S rRNA mA1618 methy 82.6 3.8 8.2E-05 43.9 7.3 81 442-529 114-199 (321)
153 PLN02336 phosphoethanolamine N 82.4 1.6 3.5E-05 47.9 4.6 80 443-533 38-117 (475)
154 PRK11873 arsM arsenite S-adeno 81.9 3.4 7.4E-05 41.8 6.4 77 441-526 76-153 (272)
155 TIGR00417 speE spermidine synt 81.5 4.4 9.5E-05 41.6 7.1 47 442-489 72-118 (270)
156 PF01135 PCMT: Protein-L-isoas 81.5 2.3 5E-05 42.6 4.9 98 425-532 57-154 (209)
157 KOG2561 Adaptor protein NUB1, 81.2 2.4 5.3E-05 47.2 5.3 87 16-115 303-402 (568)
158 PRK06202 hypothetical protein; 80.9 4.5 9.8E-05 40.0 6.8 80 441-532 59-142 (232)
159 TIGR00438 rrmJ cell division p 80.8 3.8 8.2E-05 39.3 6.0 74 441-527 31-106 (188)
160 PF08241 Methyltransf_11: Meth 80.6 4.5 9.7E-05 32.9 5.6 67 447-527 1-68 (95)
161 PRK06922 hypothetical protein; 79.3 3.4 7.3E-05 48.3 5.9 86 436-530 413-498 (677)
162 COG3963 Phospholipid N-methylt 78.6 5.2 0.00011 39.8 6.1 87 441-535 47-133 (194)
163 PF01728 FtsJ: FtsJ-like methy 78.6 3 6.4E-05 39.7 4.5 81 442-533 23-107 (181)
164 COG2813 RsmC 16S RNA G1207 met 78.2 6.6 0.00014 41.9 7.2 73 445-528 161-233 (300)
165 PRK00117 recX recombination re 78.1 14 0.0003 34.8 8.8 77 17-115 79-156 (157)
166 PRK15451 tRNA cmo(5)U34 methyl 78.0 5.1 0.00011 40.4 6.2 77 440-526 54-132 (247)
167 COG0030 KsgA Dimethyladenosine 77.8 4.3 9.4E-05 42.3 5.7 76 443-530 31-106 (259)
168 TIGR00740 methyltransferase, p 77.2 5.4 0.00012 39.7 6.1 82 441-532 52-135 (239)
169 cd04708 BAH_plantDCM_II BAH, o 76.8 0.94 2E-05 45.6 0.5 16 441-456 187-202 (202)
170 PRK13256 thiopurine S-methyltr 76.8 4.8 0.0001 41.0 5.6 40 442-484 43-82 (226)
171 TIGR00601 rad23 UV excision re 76.7 2.9 6.4E-05 45.7 4.3 37 17-55 157-193 (378)
172 KOG1270 Methyltransferases [Co 76.0 4.6 9.9E-05 42.5 5.3 41 443-486 90-130 (282)
173 TIGR03587 Pse_Me-ase pseudamin 75.8 5.4 0.00012 39.4 5.6 44 441-486 42-86 (204)
174 PF05185 PRMT5: PRMT5 arginine 75.8 5.3 0.00011 44.6 6.0 80 443-532 187-275 (448)
175 PRK14135 recX recombination re 75.2 18 0.00039 36.9 9.3 84 16-119 125-209 (263)
176 PF07021 MetW: Methionine bios 75.2 5.3 0.00011 40.1 5.3 77 433-525 4-81 (193)
177 COG0144 Sun tRNA and rRNA cyto 74.7 8.8 0.00019 41.4 7.2 88 443-535 157-245 (355)
178 PRK03612 spermidine synthase; 74.1 7.4 0.00016 44.0 6.7 81 441-529 296-383 (521)
179 PF13489 Methyltransf_23: Meth 73.7 4.8 0.0001 36.3 4.3 40 440-482 20-59 (161)
180 PF09288 UBA_3: Fungal ubiquit 73.2 3.7 8E-05 33.5 2.9 26 91-116 12-37 (55)
181 PRK13699 putative methylase; P 72.9 5.7 0.00012 40.2 5.0 43 442-487 163-205 (227)
182 PRK14600 ruvA Holliday junctio 72.9 6 0.00013 39.2 5.0 38 89-126 146-183 (186)
183 PF03291 Pox_MCEL: mRNA cappin 72.7 6 0.00013 42.4 5.3 44 442-487 62-105 (331)
184 PRK15068 tRNA mo(5)U34 methylt 72.5 9.4 0.0002 40.5 6.7 36 443-480 123-158 (322)
185 PRK04266 fibrillarin; Provisio 71.9 11 0.00024 38.1 6.8 78 442-527 72-149 (226)
186 PRK00117 recX recombination re 71.5 40 0.00088 31.7 10.1 73 16-113 28-103 (157)
187 PF05724 TPMT: Thiopurine S-me 71.3 4.8 0.0001 40.5 4.0 74 442-525 37-122 (218)
188 PRK11088 rrmA 23S rRNA methylt 69.6 9.1 0.0002 39.1 5.7 70 443-525 86-157 (272)
189 PRK11524 putative methyltransf 68.5 6.6 0.00014 40.7 4.4 41 442-485 208-248 (284)
190 COG3897 Predicted methyltransf 67.8 4.6 0.0001 40.9 3.0 80 442-535 79-158 (218)
191 PLN02366 spermidine synthase 67.5 13 0.00028 39.5 6.4 80 441-527 90-173 (308)
192 PRK14603 ruvA Holliday junctio 65.6 9.1 0.0002 38.2 4.6 37 89-125 153-192 (197)
193 PF03216 Rhabdo_ncap_2: Rhabdo 65.3 5.3 0.00011 42.4 2.9 81 22-125 35-116 (357)
194 PRK14606 ruvA Holliday junctio 65.3 8.3 0.00018 38.3 4.2 37 89-125 144-181 (188)
195 PLN02476 O-methyltransferase 64.7 14 0.00031 38.9 6.0 93 430-528 107-203 (278)
196 COG2521 Predicted archaeal met 64.6 4.6 0.0001 42.1 2.3 100 442-570 134-237 (287)
197 smart00828 PKS_MT Methyltransf 64.2 18 0.00039 35.3 6.3 43 445-488 2-44 (224)
198 PRK14135 recX recombination re 64.1 29 0.00064 35.3 8.1 80 18-115 180-262 (263)
199 TIGR01444 fkbM_fam methyltrans 64.0 14 0.00031 33.1 5.3 45 445-490 1-45 (143)
200 PTZ00146 fibrillarin; Provisio 63.5 18 0.00038 38.5 6.5 80 440-527 130-210 (293)
201 PRK14602 ruvA Holliday junctio 63.2 11 0.00023 37.9 4.6 38 89-126 156-196 (203)
202 PRK00050 16S rRNA m(4)C1402 me 61.8 16 0.00035 38.7 5.8 79 443-527 20-98 (296)
203 KOG0820 Ribosomal RNA adenine 61.5 22 0.00047 37.9 6.6 84 437-533 53-137 (315)
204 PF10294 Methyltransf_16: Puta 60.6 28 0.0006 33.5 6.8 82 442-529 45-129 (173)
205 PLN02336 phosphoethanolamine N 60.1 30 0.00066 38.1 7.9 42 441-485 265-307 (475)
206 TIGR00452 methyltransferase, p 60.0 32 0.00068 36.8 7.7 37 443-481 122-158 (314)
207 PF02536 mTERF: mTERF; InterP 59.8 18 0.00038 37.8 5.7 37 90-127 245-287 (345)
208 PRK04457 spermidine synthase; 59.6 14 0.0003 38.1 4.8 76 442-525 66-142 (262)
209 PLN02490 MPBQ/MSBQ methyltrans 59.3 21 0.00045 38.6 6.2 73 442-527 113-186 (340)
210 PRK14601 ruvA Holliday junctio 59.3 12 0.00026 37.1 4.1 35 89-124 143-177 (183)
211 TIGR03438 probable methyltrans 59.0 25 0.00054 36.8 6.6 87 441-533 62-152 (301)
212 PRK14605 ruvA Holliday junctio 58.7 13 0.00029 36.9 4.4 38 89-126 149-188 (194)
213 TIGR00084 ruvA Holliday juncti 56.7 18 0.00038 36.0 4.8 38 89-126 148-187 (191)
214 PRK11705 cyclopropane fatty ac 56.4 24 0.00052 38.4 6.2 42 442-486 167-209 (383)
215 PF02353 CMAS: Mycolic acid cy 55.4 28 0.0006 36.3 6.2 63 441-506 61-125 (273)
216 PRK14121 tRNA (guanine-N(7)-)- 55.2 24 0.00052 39.0 5.9 82 442-530 122-203 (390)
217 COG0293 FtsJ 23S rRNA methylas 54.0 27 0.0006 35.3 5.7 71 440-524 43-116 (205)
218 KOG1271 Methyltransferases [Ge 53.6 20 0.00044 36.3 4.6 73 444-526 69-143 (227)
219 COG1867 TRM1 N2,N2-dimethylgua 52.1 30 0.00064 38.1 5.9 43 443-488 53-97 (380)
220 KOG2187 tRNA uracil-5-methyltr 51.5 6.3 0.00014 44.8 0.8 59 421-482 358-420 (534)
221 PRK14604 ruvA Holliday junctio 50.0 22 0.00048 35.5 4.3 37 89-125 150-188 (195)
222 PF02631 RecX: RecX family; I 49.9 51 0.0011 29.7 6.3 21 91-111 97-118 (121)
223 KOG1663 O-methyltransferase [S 48.3 46 0.00099 34.6 6.3 74 444-524 77-154 (237)
224 COG0632 RuvA Holliday junction 47.0 22 0.00047 35.9 3.7 34 92-125 160-196 (201)
225 KOG2198 tRNA cytosine-5-methyl 46.6 54 0.0012 36.2 6.8 128 394-534 120-251 (375)
226 KOG4169 15-hydroxyprostaglandi 46.1 30 0.00065 36.1 4.6 72 451-527 12-91 (261)
227 PRK14136 recX recombination re 45.9 70 0.0015 34.5 7.4 76 18-115 230-305 (309)
228 PLN03075 nicotianamine synthas 45.7 1.2E+02 0.0026 32.4 9.2 77 442-526 123-202 (296)
229 KOG2078 tRNA modification enzy 44.6 18 0.00039 40.6 2.9 48 437-487 244-291 (495)
230 KOG1499 Protein arginine N-met 44.0 26 0.00056 38.2 3.9 39 439-480 58-96 (346)
231 PRK14137 recX recombination re 43.3 1E+02 0.0022 30.9 7.8 77 18-115 106-182 (195)
232 KOG0418 Ubiquitin-protein liga 42.5 21 0.00046 35.9 2.8 26 90-115 164-189 (200)
233 COG2230 Cfa Cyclopropane fatty 42.2 65 0.0014 34.2 6.5 64 441-507 71-136 (283)
234 PF05401 NodS: Nodulation prot 41.6 44 0.00095 33.9 4.9 69 444-526 45-113 (201)
235 PRK14134 recX recombination re 41.6 1.1E+02 0.0024 32.2 8.0 79 18-114 129-208 (283)
236 PRK11760 putative 23S rRNA C24 41.0 50 0.0011 36.2 5.6 39 440-481 209-247 (357)
237 PRK14606 ruvA Holliday junctio 40.9 45 0.00097 33.2 4.8 40 15-54 142-182 (188)
238 PRK01581 speE spermidine synth 39.5 67 0.0015 35.4 6.3 80 441-528 149-235 (374)
239 TIGR00601 rad23 UV excision re 38.9 1.5E+02 0.0032 32.8 8.8 94 29-126 267-373 (378)
240 cd01968 Nitrogenase_NifE_I Nit 37.1 1.1E+02 0.0023 33.5 7.4 128 392-530 221-367 (410)
241 PF04695 Pex14_N: Peroxisomal 36.3 40 0.00087 31.6 3.5 30 88-117 23-52 (136)
242 PRK14602 ruvA Holliday junctio 36.0 66 0.0014 32.3 5.2 42 14-55 153-197 (203)
243 COG0421 SpeE Spermidine syntha 35.3 48 0.001 35.0 4.3 92 423-525 59-155 (282)
244 COG2242 CobL Precorrin-6B meth 35.3 81 0.0017 31.7 5.6 56 433-491 27-82 (187)
245 PLN03196 MOC1-like protein; Pr 34.8 1.2E+02 0.0026 34.4 7.5 37 90-126 342-383 (487)
246 PRK14605 ruvA Holliday junctio 34.3 69 0.0015 31.9 5.0 39 16-54 148-188 (194)
247 COG3243 PhaC Poly(3-hydroxyalk 34.3 11 0.00023 42.2 -0.7 74 249-330 332-412 (445)
248 KOG1975 mRNA cap methyltransfe 34.3 24 0.00052 38.5 1.9 95 434-533 108-211 (389)
249 KOG2689 Predicted ubiquitin re 34.2 36 0.00078 36.1 3.1 33 21-54 5-37 (290)
250 KOG1500 Protein arginine N-met 34.1 75 0.0016 35.1 5.5 50 428-480 162-213 (517)
251 TIGR01283 nifE nitrogenase mol 33.8 1.8E+02 0.0039 32.3 8.7 131 392-533 260-409 (456)
252 COG1189 Predicted rRNA methyla 33.4 59 0.0013 33.9 4.5 65 440-511 77-142 (245)
253 PRK00116 ruvA Holliday junctio 31.4 76 0.0017 31.4 4.8 36 89-124 150-186 (192)
254 COG0863 DNA modification methy 31.1 91 0.002 31.6 5.4 46 440-488 220-265 (302)
255 PLN02823 spermine synthase 30.6 1.3E+02 0.0028 32.5 6.7 78 442-527 103-184 (336)
256 KOG3191 Predicted N6-DNA-methy 30.5 1.4E+02 0.0029 30.5 6.2 88 434-533 37-124 (209)
257 PRK14478 nitrogenase molybdenu 30.2 2.2E+02 0.0047 32.1 8.6 128 392-530 254-404 (475)
258 PHA01634 hypothetical protein 30.2 1.2E+02 0.0026 29.3 5.5 43 443-487 29-71 (156)
259 KOG1122 tRNA and rRNA cytosine 29.0 1.1E+02 0.0023 34.7 5.7 83 442-534 241-327 (460)
260 PF07223 DUF1421: Protein of u 28.4 51 0.0011 36.2 3.2 26 88-113 321-346 (358)
261 PRK14604 ruvA Holliday junctio 27.9 1E+02 0.0023 30.8 5.0 39 16-54 149-189 (195)
262 TIGR01285 nifN nitrogenase mol 26.2 1.6E+02 0.0034 32.7 6.6 126 391-533 248-387 (432)
263 COG5207 UBP14 Isopeptidase T [ 26.2 53 0.0012 37.8 2.9 25 91-115 561-585 (749)
264 PTZ00357 methyltransferase; Pr 25.9 91 0.002 37.4 4.7 75 458-533 720-810 (1072)
265 PF05219 DREV: DREV methyltran 25.7 1.1E+02 0.0023 32.4 4.8 117 349-484 10-133 (265)
266 PF04695 Pex14_N: Peroxisomal 24.8 97 0.0021 29.1 4.0 37 7-44 15-51 (136)
267 COG1743 Adenine-specific DNA m 24.8 85 0.0018 37.8 4.3 92 437-533 86-188 (875)
268 KOG0011 Nucleotide excision re 24.3 3.1E+02 0.0067 30.0 8.0 92 30-126 236-334 (340)
269 KOG1099 SAM-dependent methyltr 24.2 1.1E+02 0.0024 32.2 4.5 93 416-528 22-125 (294)
270 KOG2361 Predicted methyltransf 24.1 80 0.0017 33.2 3.5 77 445-527 74-152 (264)
271 PRK13901 ruvA Holliday junctio 24.0 79 0.0017 31.9 3.4 26 89-114 145-170 (196)
272 PF08242 Methyltransf_12: Meth 23.9 17 0.00037 30.7 -1.1 34 447-481 1-34 (99)
273 COG4076 Predicted RNA methylas 23.7 92 0.002 31.9 3.8 39 445-486 35-73 (252)
274 PF08704 GCD14: tRNA methyltra 23.6 1.5E+02 0.0032 30.8 5.4 73 430-504 30-103 (247)
275 PF14490 HHH_4: Helix-hairpin- 22.4 95 0.0021 27.1 3.2 28 17-44 9-36 (94)
276 cd01976 Nitrogenase_MoFe_alpha 21.7 3.3E+02 0.0071 30.1 7.9 130 391-533 234-383 (421)
277 TIGR01838 PHA_synth_I poly(R)- 21.3 34 0.00073 39.2 0.2 38 286-330 461-499 (532)
278 PF10440 WIYLD: Ubiquitin-bind 21.3 1.4E+02 0.003 25.3 3.7 39 91-129 14-62 (65)
279 PRK10904 DNA adenine methylase 21.3 53 0.0011 34.1 1.6 49 432-485 17-65 (271)
280 PF01564 Spermine_synth: Sperm 21.3 1.7E+02 0.0037 29.9 5.3 79 441-528 75-159 (246)
281 COG0623 FabI Enoyl-[acyl-carri 21.2 1.7E+02 0.0036 30.8 5.1 110 455-576 23-135 (259)
282 KOG0871 Class 2 transcription 20.8 2E+02 0.0042 28.2 5.1 55 28-107 67-121 (156)
283 TIGR00571 dam DNA adenine meth 20.8 55 0.0012 33.7 1.6 47 434-485 16-63 (266)
284 KOG0011 Nucleotide excision re 20.6 1E+02 0.0022 33.6 3.5 38 16-55 135-172 (340)
285 PF07553 Lipoprotein_Ltp: Host 20.5 1.1E+02 0.0024 24.2 2.9 21 91-111 24-47 (48)
286 cd01967 Nitrogenase_MoFe_alpha 20.4 3.3E+02 0.0071 29.4 7.5 131 392-533 223-369 (406)
287 cd01973 Nitrogenase_VFe_beta_l 20.3 3.7E+02 0.008 30.1 8.0 135 392-533 242-395 (454)
No 1
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.91 E-value=5.1e-25 Score=228.83 Aligned_cols=109 Identities=19% Similarity=0.343 Sum_probs=95.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
..++++||||||||+++||+++|| ++++++|||+.|++||++++. ...+...||.++..+.+... ++|
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~~~~-----~~D 69 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEALRKS-----DVD 69 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhcccc-----CCC
Confidence 358999999999999999999997 679999999999999987653 24467799999998877532 799
Q ss_pred EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149 522 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574 (576)
Q Consensus 522 LVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~ 574 (576)
+|+||||||+||.+ |+|.|++|+|++||++|+|+|+.++|.
T Consensus 70 vligGpPCQ~FS~a------------G~r~~~~D~R~~L~~~~~r~I~~~~P~ 110 (328)
T COG0270 70 VLIGGPPCQDFSIA------------GKRRGYDDPRGSLFLEFIRLIEQLRPK 110 (328)
T ss_pred EEEeCCCCcchhhc------------CcccCCcCccceeeHHHHHHHHhhCCC
Confidence 99999999999976 466789999999999999999999984
No 2
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=99.91 E-value=6.8e-25 Score=220.36 Aligned_cols=105 Identities=22% Similarity=0.395 Sum_probs=87.4
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 523 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV 523 (576)
|||+||||||||+++||+++|| ++++|+|+|+.|+++|+.||. .+..+||++++.+.|+. ++|||
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l 65 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL 65 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence 5899999999999999999996 679999999999999998874 36789999999886642 59999
Q ss_pred EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149 524 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 524 IGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
+||||||+||.+| ++.|++|+|+.||++|+|+|+++||..
T Consensus 66 ~ggpPCQ~fS~ag------------~~~~~~d~r~~L~~~~~~~v~~~~Pk~ 105 (335)
T PF00145_consen 66 IGGPPCQGFSIAG------------KRKGFDDPRNSLFFEFLRIVKELKPKY 105 (335)
T ss_dssp EEE---TTTSTTS------------THHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred EeccCCceEeccc------------cccccccccchhhHHHHHHHhhccceE
Confidence 9999999999875 345789999999999999999999853
No 3
>PRK10458 DNA cytosine methylase; Provisional
Probab=99.88 E-value=7.9e-23 Score=222.04 Aligned_cols=125 Identities=17% Similarity=0.288 Sum_probs=97.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH--------Hhh
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SLI 514 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie--------~l~ 514 (576)
++++|||||||||+++||+++|+ ++|+++|+|+.|++||+++|.. .+......+||++++...+. ..+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 68999999999999999999998 5799999999999999998732 23344567899999854321 111
Q ss_pred -hccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 008149 515 -HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 515 -~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~-D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
...+++|||+||||||+||.+|+.+.. -.|.+.|+. |+|++||++|+|+|++++|.+
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG~~k~~----~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~ 222 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFECETQGTLFFDVARIIDAKRPAI 222 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhcccccc----cccccccccCCccccHHHHHHHHHHHhCCCE
Confidence 134689999999999999999754211 013445775 899999999999999999864
No 4
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=2.5e-22 Score=207.82 Aligned_cols=103 Identities=17% Similarity=0.361 Sum_probs=89.0
Q ss_pred ccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 008149 446 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 525 (576)
Q Consensus 446 VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIG 525 (576)
||||||||||+++||+++|| ++++++|+|+.|+++|+.+|. + .+..+||++++.+++ +++|||+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~-------~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI-------PDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC-------CCcCEEEe
Confidence 68999999999999999998 569999999999999987653 3 345789999986543 57999999
Q ss_pred cCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149 526 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 526 GpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
|||||+||.+| ++.|++|+|+.||++|+|+|++++|.+
T Consensus 66 g~PCq~fS~ag------------~~~~~~d~r~~L~~~~~r~i~~~~P~~ 103 (315)
T TIGR00675 66 GFPCQPFSIAG------------KRKGFEDTRGTLFFEIVRILKEKKPKF 103 (315)
T ss_pred cCCCcccchhc------------ccCCCCCchhhHHHHHHHHHhhcCCCE
Confidence 99999999764 456788999999999999999999853
No 5
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.86 E-value=2.8e-22 Score=203.74 Aligned_cols=106 Identities=19% Similarity=0.360 Sum_probs=91.9
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 523 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV 523 (576)
++|+||||||||+++||+++|+ ++++++|+|+.|+++|+++|.. .++.+||++++..++ .+++|+|
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~------~~~~D~l 66 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDF------IPDIDLL 66 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhc------CCCCCEE
Confidence 5899999999999999999997 5699999999999999987642 256799999987653 3689999
Q ss_pred EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149 524 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 524 IGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
+||||||+||.+|+ +.|.+|+|+.||++|+|+|++++|.+
T Consensus 67 ~~gpPCq~fS~ag~------------~~~~~d~r~~L~~~~~~~i~~~~P~~ 106 (275)
T cd00315 67 TGGFPCQPFSIAGK------------RKGFEDTRGTLFFEIIRILKEKKPKY 106 (275)
T ss_pred EeCCCChhhhHHhh------------cCCCCCchHHHHHHHHHHHHhcCCCE
Confidence 99999999998753 45778999999999999999999853
No 6
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.28 E-value=5e-12 Score=127.14 Aligned_cols=111 Identities=18% Similarity=0.304 Sum_probs=95.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+++|++|+||+||+..+|+.+.|+-.+|+|+|++..|..+|+.+ ..+.++-..||+.|+.+++..+ ++|
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N-----~h~~L~k~~~I~~lt~kefd~l-----~~~ 71 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN-----YHSNLVKTRNIQSLTVKEFDKL-----QAN 71 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC-----cccchhhccccceeeHhhhhhc-----ccc
Confidence 358999999999999999999999999999999999999999754 3355677789999999988765 789
Q ss_pred EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149 522 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574 (576)
Q Consensus 522 LVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~ 574 (576)
++.-.||||+|.-.| .++.+.|+|+.-|.+.+.+|-+++..
T Consensus 72 m~lMSPpCQPfTRiG------------~q~D~~D~Rs~aflhil~~lP~~q~L 112 (338)
T KOG0919|consen 72 MLLMSPPCQPFTRIG------------LQRDTEDKRSDAFLHILGLLPECQEL 112 (338)
T ss_pred eEeeCCCCCchhhhc------------ccccccCchhHHHHHHHhhhhhhhhh
Confidence 999999999999554 34457899999999999999887643
No 7
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.24 E-value=7.2e-12 Score=127.86 Aligned_cols=157 Identities=13% Similarity=0.166 Sum_probs=110.4
Q ss_pred CCCCccccccccccch----hhhHhhhhhh----ccCCceeeccccc-Ccccccccccc----cCCCCCCC--CCCCCCC
Q 008149 247 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH----NLPTTNRF--HIPPEPP 311 (576)
Q Consensus 247 ~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~h----NLP~~nR~--~~~p~~p 311 (576)
.+|.+|++|||..+-. ..+..|.+.| |.+.+.++|+..| .||+|+|.|+= .++...-+ |-.+.++
T Consensus 102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~ 181 (275)
T cd00315 102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK 181 (275)
T ss_pred cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence 4899999999998865 4566666666 6789999999999 78899999952 22222111 1122346
Q ss_pred CcccccccCCCccCCCcCcCcccceeeccCcchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCC
Q 008149 312 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD 391 (576)
Q Consensus 312 ~ti~d~lp~~~~~wp~wd~r~klnci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g~~~~~ple 391 (576)
.|+.|+| ++..|+. -..|+++.... ... .+... ..-+|..+...+.|+
T Consensus 182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT 229 (275)
T cd00315 182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT 229 (275)
T ss_pred CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence 8999999 5567776 45677766421 000 10000 001145677899999
Q ss_pred hhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccc
Q 008149 392 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 436 (576)
Q Consensus 392 ~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvL 436 (576)
+.|+.||+|||++|+-.++ +.+.++|.+||+..+..++++...+
T Consensus 230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i 273 (275)
T cd00315 230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI 273 (275)
T ss_pred HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence 9999999999999987533 8999999999999998877766443
No 8
>PRK10458 DNA cytosine methylase; Provisional
Probab=98.61 E-value=3e-08 Score=108.88 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=47.0
Q ss_pred ccccCCCChhhHHHHhcCC--CCCcccCCCChHHHHHHhhhhhccccchhhhccccccC
Q 008149 384 AYKLGPVDPEHIELILGYP--SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 440 (576)
Q Consensus 384 ~~~~~ple~~E~E~i~GfP--~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f 440 (576)
.++++.|||.|+-||+||| ..++=...+|.++.||.+|||..|+++..++..|+.+.
T Consensus 398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~~ 456 (467)
T PRK10458 398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKI 456 (467)
T ss_pred cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 3578999999999999995 43332247899999999999999999998887777643
No 9
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=98.44 E-value=4.7e-08 Score=98.66 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=42.2
Q ss_pred eecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcccc
Q 008149 381 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 437 (576)
Q Consensus 381 W~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK 437 (576)
++.+.+.+.|++.|+.||+|||++|+- ..+.++++|.+||+..+....++...|+
T Consensus 280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i~ 334 (335)
T PF00145_consen 280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAIK 334 (335)
T ss_dssp EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHHH
T ss_pred ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHhh
Confidence 356789999999999999999999986 5666699999999999888777765543
No 10
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=1.6e-06 Score=90.45 Aligned_cols=178 Identities=14% Similarity=0.193 Sum_probs=94.3
Q ss_pred cCCCCccccccccccch----hhhHhhhhhh----ccCCceeeccccc-CcccccccccccCC---CCCCCCCCCC----
Q 008149 246 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE---- 309 (576)
Q Consensus 246 ~~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~hNLP---~~nR~~~~p~---- 309 (576)
..+|.+|++|||..+-. ..+..|-+-| |.+...++||..| .||+|+|.|+--.- ....+. .|.
T Consensus 98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~~-~p~~~~~ 176 (315)
T TIGR00675 98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNFE-FPKPIYV 176 (315)
T ss_pred hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCCC-CCCCccc
Confidence 35799999999987643 3566666555 6677889999999 99999999876322 111111 232
Q ss_pred -CCCcccccccCCC----ccCCCcCcCcccceeeccC-------------cchhHHHHHHHHHHhhccCCCchhhhHHHH
Q 008149 310 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSGT-------------SGISQLCERFEKLLRDSRGVLSSQQQRDIL 371 (576)
Q Consensus 310 -~p~ti~d~lp~~~----~~wp~wd~r~klnci~t~~-------------~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl 371 (576)
...||.|++.... .|+++-...+.+..+.... ..........+++..+.... ...+..+.
T Consensus 177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~ 254 (315)
T TIGR00675 177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL 254 (315)
T ss_pred ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence 3567888775321 1111100000000000000 00000000000000000000 00000000
Q ss_pred HhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccch
Q 008149 372 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLG 430 (576)
Q Consensus 372 ~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~ 430 (576)
..+. .+.. +-+.+.+.|++.|.-||+|||++|. |..+.+..+|.+||+.-+....
T Consensus 255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~--f~~s~~~~~~qiGNAVPp~la~ 309 (315)
T TIGR00675 255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFK--FPVSDSQLYKQAGNAVVVPVIE 309 (315)
T ss_pred eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccE--eCCCHHHHHhhhCCcccHHHHH
Confidence 0010 0111 2356779999999999999999996 4689999999999998765443
No 11
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.89 E-value=3.1e-05 Score=67.49 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
|.+|||+|||.|-+.+.+.+.| . ..+.++|+|+.+....+.++...... ...++.+|++++.. . ...+.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-----~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-P-----LPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-T-----CTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-h-----ccCceeE
Confidence 4689999999999999999999 2 45889999999999988877654321 22355677765531 1 1236899
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|++-||.-+..
T Consensus 73 ~Iv~npP~~~~~ 84 (117)
T PF13659_consen 73 LIVTNPPYGPRS 84 (117)
T ss_dssp EEEE--STTSBT
T ss_pred EEEECCCCcccc
Confidence 999999986543
No 12
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.62 E-value=2.6e-05 Score=81.85 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=97.5
Q ss_pred cCCCCccccccccccchh---hhHhhhhhhcc----CCceeecccc-cCcccccccccc-----cCCCCCCCCCCCC---
Q 008149 246 VAQPPYFFYGNVVDVSID---CWVKMSHFLYS----LEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE--- 309 (576)
Q Consensus 246 ~~~ppfF~~eNV~~~~~~---~w~~Is~fL~~----i~Pe~vds~~-fsaa~R~R~y~h-----NLP~~nR~~~~p~--- 309 (576)
..+|.||++|||..|-.. .|+.|.+-|.. ++..++||+. -.||+|.|-|+. |+-.+..-. .+.
T Consensus 106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~ 184 (328)
T COG0270 106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG 184 (328)
T ss_pred hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence 346799999999999886 88888888754 4456677664 578999999999 777764421 111
Q ss_pred CCCcccccc-----cCCCccCC-CcCcCcccceeeccCcchhHHHHHHHH--------HHhhccC------CCchhhhHH
Q 008149 310 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTSGISQLCERFEK--------LLRDSRG------VLSSQQQRD 369 (576)
Q Consensus 310 ~p~ti~d~l-----p~~~~~wp-~wd~r~klnci~t~~~~~~~l~~~i~~--------~~~~~~~------~~~~~~q~~ 369 (576)
...++.+++ +.+..-|. .+...-+.+-+... ...++.. ......+ ......=..
T Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t 258 (328)
T COG0270 185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKN------KGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPT 258 (328)
T ss_pred cccchhhhhhhccCcchhhhhccccccccccccCchh------hhccccccccccccccccccCCCceeEeCCCCCCCce
Confidence 122222222 11111000 00000000000000 0000000 0000000 000000000
Q ss_pred HHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccc
Q 008149 370 ILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 438 (576)
Q Consensus 370 vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~ 438 (576)
+. ...+-.=+-+..-+.|++.|+-+|+|||+.|.-.+ +.+..++.+||+..+....++..-+..
T Consensus 259 ~~---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~~ 322 (328)
T COG0270 259 VR---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAILK 322 (328)
T ss_pred ee---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHHH
Confidence 00 11111112355667799999999999999999764 999999999999988877776655443
No 13
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.45 E-value=0.0001 Score=74.79 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=57.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+||||+||.|.+.+.+.+..-. ..|+++|+|+.+.+..+.+....+ ..+..+|+.+.-.+.+ .+.||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~------~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL------RGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc------CCCEeE
Confidence 468999999999999988754211 236899999999998887764332 2245677754321111 257999
Q ss_pred EEecCCCCCccc
Q 008149 523 VICQNSVPQIPN 534 (576)
Q Consensus 523 VIGGpPCQ~FS~ 534 (576)
|+.-|||.+.+.
T Consensus 157 Vv~NPPy~~~~~ 168 (251)
T TIGR03704 157 LAANAPYVPTDA 168 (251)
T ss_pred EEECCCCCCchh
Confidence 999999998763
No 14
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.44 E-value=0.00018 Score=70.12 Aligned_cols=91 Identities=21% Similarity=0.253 Sum_probs=52.5
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHH
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFE 511 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie 511 (576)
|+.|.+.--.+.+|||||||.|.+.+=.-.-|. +-|+.||.|+.+.++++.|....+... ..++..|... .+.
T Consensus 33 FniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~----~l~ 106 (183)
T PF03602_consen 33 FNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK----FLL 106 (183)
T ss_dssp HHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH----HHH
T ss_pred HHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH----HHH
Confidence 444444312478899999999987664445576 458999999999999999987654222 1123334322 122
Q ss_pred HhhhccCCccEEEecCCC
Q 008149 512 SLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 512 ~l~~~~g~~DLVIGGpPC 529 (576)
.+......||||.--||=
T Consensus 107 ~~~~~~~~fDiIflDPPY 124 (183)
T PF03602_consen 107 KLAKKGEKFDIIFLDPPY 124 (183)
T ss_dssp HHHHCTS-EEEEEE--ST
T ss_pred hhcccCCCceEEEECCCc
Confidence 222224689999999983
No 15
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.35 E-value=0.00029 Score=75.14 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=70.8
Q ss_pred hccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccc
Q 008149 424 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDI 502 (576)
Q Consensus 424 f~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI 502 (576)
|+.-...-+..+++..++ |-+|+|+|||+|-+++-....|-. + |+|+||||.|.+-++.+-.-+.-.+. ..+++|.
T Consensus 171 Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~ 247 (341)
T COG2520 171 FSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA 247 (341)
T ss_pred ECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence 555555555666666555 889999999999999999999953 4 99999999999999987643322332 2456787
Q ss_pred cccChhhHHHhhhccCCccEEEecCCC
Q 008149 503 QALTTKKFESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 503 ~~lt~~~Ie~l~~~~g~~DLVIGGpPC 529 (576)
+++..+ .+.+|=||-|-|=
T Consensus 248 rev~~~--------~~~aDrIim~~p~ 266 (341)
T COG2520 248 REVAPE--------LGVADRIIMGLPK 266 (341)
T ss_pred HHhhhc--------cccCCEEEeCCCC
Confidence 766542 2679999999984
No 16
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.33 E-value=0.00048 Score=67.19 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=56.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||||||.|.+.+.+-..|.. .|++||+++.+.++.+.++...+... ..++.+|+.+. +..+......+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~ 122 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFD 122 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCc
Confidence 3568999999999999999888874 58999999999999998886543221 12345555322 11111111237
Q ss_pred cEEEecCCCC
Q 008149 521 DFVICQNSVP 530 (576)
Q Consensus 521 DLVIGGpPCQ 530 (576)
|+|+--||=.
T Consensus 123 dvv~~DPPy~ 132 (189)
T TIGR00095 123 NVIYLDPPFF 132 (189)
T ss_pred eEEEECcCCC
Confidence 9998888853
No 17
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.31 E-value=0.00046 Score=68.49 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=50.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+..+-+|+|+|||+|.|++-+.+.+ +.+.|+|+|+||.|.+.++.+-..++-.+.+ +..+|.+++.. .+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~ 168 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG 168 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence 4557889999999999999887733 2356999999999999998876544433332 35677766643 24
Q ss_pred CccEEEecCCCC
Q 008149 519 SIDFVICQNSVP 530 (576)
Q Consensus 519 ~~DLVIGGpPCQ 530 (576)
.+|-|+.|.|=.
T Consensus 169 ~~drvim~lp~~ 180 (200)
T PF02475_consen 169 KFDRVIMNLPES 180 (200)
T ss_dssp -EEEEEE--TSS
T ss_pred ccCEEEECChHH
Confidence 689999998843
No 18
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.21 E-value=0.00052 Score=67.85 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=52.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+|||||||.|.+.+.+-..|. .-|.++|+++.+.+..+.+....+.....++.+|+.+. +. ...+.+|+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~fDl 124 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPHNV 124 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCceE
Confidence 46899999999999985333343 34889999999999999887655322222445565331 11 11246999
Q ss_pred EEecCC
Q 008149 523 VICQNS 528 (576)
Q Consensus 523 VIGGpP 528 (576)
|+--||
T Consensus 125 V~~DPP 130 (199)
T PRK10909 125 VFVDPP 130 (199)
T ss_pred EEECCC
Confidence 999999
No 19
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.18 E-value=0.00087 Score=72.70 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=58.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+|||||||+||+++.....|. .-|++||+++.+....+.++..++.. ...++.+|+.++- .++....+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~~~~~ 293 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRDRGEK 293 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHhcCCC
Confidence 467899999999999887666664 35889999999999999888654332 1224567775432 222212347
Q ss_pred ccEEEecCCC
Q 008149 520 IDFVICQNSV 529 (576)
Q Consensus 520 ~DLVIGGpPC 529 (576)
||+||--||+
T Consensus 294 fDlVilDPP~ 303 (396)
T PRK15128 294 FDVIVMDPPK 303 (396)
T ss_pred CCEEEECCCC
Confidence 9999999997
No 20
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.02 E-value=0.0008 Score=64.98 Aligned_cols=82 Identities=24% Similarity=0.243 Sum_probs=49.2
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC-ccE
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS-IDF 522 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~-~DL 522 (576)
+|+|+|||+||=.+.|.+.+ ..|+|||+|+......++|-+-.+. ....++++|..++-.. + .... +|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~--~~~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----L--KSNKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B--------SE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----c--cccccccE
Confidence 58999999999999999985 4589999999998888876543211 1112345555543211 0 1122 799
Q ss_pred EEecCCCCCcccc
Q 008149 523 VICQNSVPQIPNS 535 (576)
Q Consensus 523 VIGGpPCQ~FS~a 535 (576)
|...||=-+.+..
T Consensus 73 vFlSPPWGGp~Y~ 85 (163)
T PF09445_consen 73 VFLSPPWGGPSYS 85 (163)
T ss_dssp EEE---BSSGGGG
T ss_pred EEECCCCCCcccc
Confidence 9999998887754
No 21
>PHA03412 putative methyltransferase; Provisional
Probab=96.95 E-value=0.0012 Score=67.37 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=81.5
Q ss_pred CCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcC--C
Q 008149 388 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I 465 (576)
Q Consensus 388 ~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aG--i 465 (576)
++|+-+|.|.++ .||+.. . .--.+.+|.-|+...+++++... . . .+.+|||+-||.|.+.+.+-+.- -
T Consensus 5 ~~~~~~~~~f~~---~n~~~~---~-~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~ 74 (241)
T PHA03412 5 KALTYEEKLFII---ENFHEG---A-FTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA 74 (241)
T ss_pred ccccHHHHHHHH---hhcccc---c-ccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence 467778888776 577762 1 12234568888888887776422 1 2 36799999999999998876531 1
Q ss_pred ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 008149 466 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 533 (576)
Q Consensus 466 ~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 533 (576)
+-..|.+||||+.+.+..+.+. ....++..|+..... .+.||+||+=||=-...
T Consensus 75 ~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 75 KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF---------DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence 1125889999999988876542 223356677764321 14799999999965543
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.87 E-value=0.0025 Score=58.83 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=62.6
Q ss_pred CCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+||||-||.|-+...|. +++-..+ ++++|+++.+.+..+......+.....+..+||.++... ++ +.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence 46899999999999999999 5654333 889999999999888876554443334667899887643 32 479
Q ss_pred cEEEecCCCCCcc
Q 008149 521 DFVICQNSVPQIP 533 (576)
Q Consensus 521 DLVIGGpPCQ~FS 533 (576)
|+|+...++..+.
T Consensus 75 D~I~~~~~l~~~~ 87 (152)
T PF13847_consen 75 DIIISNGVLHHFP 87 (152)
T ss_dssp EEEEEESTGGGTS
T ss_pred eEEEEcCchhhcc
Confidence 9999998885444
No 23
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.84 E-value=0.002 Score=46.65 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 126 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~ 126 (576)
+++..|+.|||++++|..|+.+||.| ++.-+++|+
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAANGN--VERAAEYLL 37 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHC
Confidence 47789999999999999999999987 666666653
No 24
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.82 E-value=0.0061 Score=63.96 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=58.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+|||+|||.|++.+.+...|. .++++|+|+...+..+.+....+.....+..+|+.++... .+.+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~ 249 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV 249 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence 3467899999999999887777775 3689999998877666665443322223456787766421 2479
Q ss_pred cEEEecCCCCCcc
Q 008149 521 DFVICQNSVPQIP 533 (576)
Q Consensus 521 DLVIGGpPCQ~FS 533 (576)
|+|+.-|||...+
T Consensus 250 D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 250 DAIATDPPYGRST 262 (329)
T ss_pred CEEEECCCCcCcc
Confidence 9999999986544
No 25
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.77 E-value=0.002 Score=69.11 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=54.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+|||||||+|.+++.+...|- .|++||+++.+.+..+.+....+.....+..+|+.++... ..+.+|+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~ 303 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL 303 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence 45799999999999998887763 4889999999999998877544322122445666543211 1146899
Q ss_pred EEecCC
Q 008149 523 VICQNS 528 (576)
Q Consensus 523 VIGGpP 528 (576)
|+-=||
T Consensus 304 vi~DPP 309 (374)
T TIGR02085 304 VLVNPP 309 (374)
T ss_pred EEECCC
Confidence 999999
No 26
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.76 E-value=0.0029 Score=66.08 Aligned_cols=81 Identities=22% Similarity=0.214 Sum_probs=58.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+|||||||.|.+++.+.+.|- -|+++|+++.+.+..+.+....+.....++.+|+.++... ..+.+|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~ 243 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL 243 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence 46899999999999999998774 4789999999998888766443321122455666543210 1246899
Q ss_pred EEecCCCCCcc
Q 008149 523 VICQNSVPQIP 533 (576)
Q Consensus 523 VIGGpPCQ~FS 533 (576)
|+--||+.+..
T Consensus 244 Vv~dPPr~G~~ 254 (315)
T PRK03522 244 VLVNPPRRGIG 254 (315)
T ss_pred EEECCCCCCcc
Confidence 99999987653
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.71 E-value=0.0048 Score=58.64 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
..-++|||-||+|-+++.+.+.+-..+ |.++|+++.+....+.++..++-....+...|+.+-- ..+.||
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD 100 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD 100 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence 457899999999999999999887644 8999999999999998887553222223445553211 125899
Q ss_pred EEEecCC
Q 008149 522 FVICQNS 528 (576)
Q Consensus 522 LVIGGpP 528 (576)
+|+..||
T Consensus 101 ~Iv~NPP 107 (170)
T PF05175_consen 101 LIVSNPP 107 (170)
T ss_dssp EEEE---
T ss_pred EEEEccc
Confidence 9999999
No 28
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.68 E-value=0.0039 Score=63.63 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=57.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||++||.||.++.+..+--+--.|+++|+++...+.++.+....+.....+...|.+.+.. ..+.||
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 142 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD 142 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence 457899999999999988765311111489999999999888877654432222234455543321 124699
Q ss_pred EEEecCCCCCccc
Q 008149 522 FVICQNSVPQIPN 534 (576)
Q Consensus 522 LVIGGpPCQ~FS~ 534 (576)
.|+--+||.+...
T Consensus 143 ~Vl~D~Pcsg~G~ 155 (264)
T TIGR00446 143 AILLDAPCSGEGV 155 (264)
T ss_pred EEEEcCCCCCCcc
Confidence 9999999986543
No 29
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.58 E-value=0.0039 Score=45.64 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=28.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhH
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI 125 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I 125 (576)
.+++..|+.|||+++++..|+.+||.+ ++.-++++
T Consensus 3 ~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEMGFSREQAREALRACNGN--VERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHhC
Confidence 457789999999999999999999984 66655543
No 30
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.52 E-value=0.0084 Score=60.22 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+-. ..+.||
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD 177 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD 177 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence 4578999999999999988876522 347899999999888887654111112223445553211 025799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+.-||+-+.+
T Consensus 178 ~Iv~npPy~~~~ 189 (275)
T PRK09328 178 LIVSNPPYIPEA 189 (275)
T ss_pred EEEECCCcCCcc
Confidence 999999997755
No 31
>PHA03411 putative methyltransferase; Provisional
Probab=96.39 E-value=0.0059 Score=63.68 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=65.5
Q ss_pred hhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccc
Q 008149 421 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIE 500 (576)
Q Consensus 421 g~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~ 500 (576)
|--|+.+.+.++| ++... .+-+|||++||+|.+.+.+....-. ..|+++|+++.+.+..+..+ +...++.+
T Consensus 46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~ 116 (279)
T PHA03411 46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITS 116 (279)
T ss_pred eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEEC
Confidence 6667778888887 34332 2358999999999998777443111 24789999999988776532 22335567
Q ss_pred cccccChhhHHHhhhccCCccEEEecCCCCCccc
Q 008149 501 DIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 534 (576)
Q Consensus 501 DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ 534 (576)
|+.++.. .+.||+|++-||-.....
T Consensus 117 D~~e~~~---------~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 117 DVFEFES---------NEKFDVVISNPPFGKINT 141 (279)
T ss_pred chhhhcc---------cCCCcEEEEcCCccccCc
Confidence 7765431 146999999999877553
No 32
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.38 E-value=0.0051 Score=65.75 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=54.2
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh----c---
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH----K--- 516 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~----~--- 516 (576)
-+|||||||.|++++++.+.. +-|++||+++.+.+..+.+-..++.....++.+|+.++-.+ +..... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence 469999999999999988764 35899999999999888765433222222456777554211 110000 0
Q ss_pred --cCCccEEEecCCC
Q 008149 517 --LGSIDFVICQNSV 529 (576)
Q Consensus 517 --~g~~DLVIGGpPC 529 (576)
...+|+|+--||=
T Consensus 284 ~~~~~~D~v~lDPPR 298 (362)
T PRK05031 284 LKSYNFSTIFVDPPR 298 (362)
T ss_pred ccCCCCCEEEECCCC
Confidence 1148999999993
No 33
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.35 E-value=0.0073 Score=43.90 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 126 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~ 126 (576)
+++..|+.|||+++++..|+.+|+.| ++.-+++|+
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL 37 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence 47789999999999999999999985 776677765
No 34
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.33 E-value=0.013 Score=55.74 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+||||.||.|.++..+...|. .|+++|+++...+..+.+....+ ....+..+|+.+.. .+.+|+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~----------~~~fD~ 85 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNN-VGLDVVMTDLFKGV----------RGKFDV 85 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcC-CceEEEEccccccc----------CCcccE
Confidence 35799999999999999999885 47899999999888777654332 11223445654321 247999
Q ss_pred EEecCCCCCcc
Q 008149 523 VICQNSVPQIP 533 (576)
Q Consensus 523 VIGGpPCQ~FS 533 (576)
|+..+|+...+
T Consensus 86 Vi~n~p~~~~~ 96 (179)
T TIGR00537 86 ILFNPPYLPLE 96 (179)
T ss_pred EEECCCCCCCc
Confidence 99999997665
No 35
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.28 E-value=0.011 Score=68.65 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+|||||||.||+++.+...|.. .|++||+++.+.+..+.+...++.. ...++.+|+.+. ++. ..+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~ 608 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQ 608 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCC
Confidence 3568999999999999999998873 4899999999999999887644322 122345665432 111 1257
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
||+||-=||+-.-+
T Consensus 609 fDlIilDPP~f~~~ 622 (702)
T PRK11783 609 FDLIFIDPPTFSNS 622 (702)
T ss_pred cCEEEECCCCCCCC
Confidence 99999999975543
No 36
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.28 E-value=0.012 Score=63.92 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=57.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||||||+|.+++.|.+.+- .|+++|+++.+.+..+.+....+.....++.+|+.++- ..+....+.+|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l----~~~~~~~~~~D 364 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL----PKQPWAGQIPD 364 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH----HHHHhcCCCCC
Confidence 346899999999999999988763 47999999999988887765433222234556665421 11111124589
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|+--||.-+
T Consensus 365 ~vi~dPPr~G 374 (431)
T TIGR00479 365 VLLLDPPRKG 374 (431)
T ss_pred EEEECcCCCC
Confidence 9999999765
No 37
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.28 E-value=0.0089 Score=65.45 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=58.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||++||.||.+..+..+ +-. ..|+++|+++...+..+.+....+.....+..+|..++.. .+.|
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~f 319 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNR-GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQP 319 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCC
Confidence 3578999999999988766542 211 2489999999998888877654432222244566665431 1469
Q ss_pred cEEEecCCCCCcccc
Q 008149 521 DFVICQNSVPQIPNS 535 (576)
Q Consensus 521 DLVIGGpPCQ~FS~a 535 (576)
|+|+-.+||.+....
T Consensus 320 D~Vl~D~Pcsg~g~~ 334 (445)
T PRK14904 320 DAILLDAPCTGTGVL 334 (445)
T ss_pred CEEEEcCCCCCcchh
Confidence 999999999887754
No 38
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.25 E-value=0.01 Score=56.04 Aligned_cols=76 Identities=18% Similarity=0.072 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-++||++||.|.+...+.+.+- .+.++|+|+......+.++... ....++.+|+.++.... ..+|
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~~--------~~~d 79 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLPK--------LQPY 79 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCccc--------cCCC
Confidence 346899999999999998888753 4789999999999888766431 12235567777664211 2589
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
+|+|.+|=+
T Consensus 80 ~vi~n~Py~ 88 (169)
T smart00650 80 KVVGNLPYN 88 (169)
T ss_pred EEEECCCcc
Confidence 999998855
No 39
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.17 E-value=0.018 Score=57.04 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=57.8
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhH
Q 008149 432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKF 510 (576)
Q Consensus 432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~I 510 (576)
+|..|-+.+-.+-++||||||.|++.+=.-.=|. .-++.||.|..+..+++.|-...+..+. .+...|.. .-+
T Consensus 33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~----~~L 106 (187)
T COG0742 33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL----RAL 106 (187)
T ss_pred HHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH----HHH
Confidence 3455555223578899999999987543334455 4588999999999999988655432222 12233333 111
Q ss_pred HHhhhccCCccEEEecCCCC
Q 008149 511 ESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 511 e~l~~~~g~~DLVIGGpPCQ 530 (576)
.. ....+.||+|.-=||=.
T Consensus 107 ~~-~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 107 KQ-LGTREPFDLVFLDPPYA 125 (187)
T ss_pred Hh-cCCCCcccEEEeCCCCc
Confidence 11 12223599999999977
No 40
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.019 Score=65.51 Aligned_cols=97 Identities=23% Similarity=0.270 Sum_probs=65.9
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCC----CCCCCCchhhhhhhh-HHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDND----GTNEDKSDETLYGTM-EIT 92 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~----~~ne~~~~e~~~~~~-~k~ 92 (576)
-+.++|+.||||++--.||+=-.|..+ ++.-...|..+ .|+.|-++ .++-- .+.. .+.+ +-.
T Consensus 573 s~i~qL~~MGFp~eac~rAly~tgN~~-aEaA~NWl~~H----------MdDpd~~~p~vvp~~~~-~a~~-~~~~e~~v 639 (763)
T KOG0944|consen 573 SVISQLVEMGFPEEACRRALYYTGNSG-AEAASNWLMEH----------MDDPDIDDPFVVPGNSP-KADA-REVDEESV 639 (763)
T ss_pred HHHHHHHHcCCCHHHHHHHHhhhcCcc-HHHHHHHHHHh----------ccCcccCCceecCCCCC-cccc-CCCChhHh
Confidence 367899999999999999999999988 77766666632 11111111 00000 0000 0122 234
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 93 LQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 93 ~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
-+++.|||+..+|..|+..... +|+..||-||+--
T Consensus 640 ~si~smGf~~~qa~~aL~~~n~--nveravDWif~h~ 674 (763)
T KOG0944|consen 640 ASIVSMGFSRNQAIKALKATNN--NVERAVDWIFSHM 674 (763)
T ss_pred eeeeeecCcHHHHHHHHHhcCc--cHHHHHHHHHhcc
Confidence 5899999999999999987654 5999999999754
No 41
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.014 Score=57.98 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=57.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|+||=||+|=+.+|...+|- ..|++||+|+.+..+.+.+-.. .-+ ..+...||+++. +.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~-----------~~~ 109 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR-----------GKF 109 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----------Ccc
Confidence 456799999999999999999997 4699999999999999987543 122 234567777665 578
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|.+|--||
T Consensus 110 dtvimNPP 117 (198)
T COG2263 110 DTVIMNPP 117 (198)
T ss_pred ceEEECCC
Confidence 99999887
No 42
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.14 E-value=0.015 Score=63.45 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=60.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||++||.||.+..+.+.+-. ..|+++|+++......+.+....+.. ..+..+|+.++.. +. ..+.||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~-----~~-~~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQ-----WW-DGQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchh-----hc-ccCCCC
Confidence 3678999999999999888776532 35899999999999988877654322 2345677765431 00 124699
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+-.+||.+..
T Consensus 316 ~Vl~D~Pcs~~G 327 (427)
T PRK10901 316 RILLDAPCSATG 327 (427)
T ss_pred EEEECCCCCccc
Confidence 999999998754
No 43
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.13 E-value=0.012 Score=64.28 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=59.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||||||.|.+++.|.+.+. .|+++|+++.+.+..+.+-...+.....++.+|+.+... .+....+.||
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~fD 369 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----DQPWALGGFD 369 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----hhhhhcCCCC
Confidence 357899999999999999988763 478999999999888876543322223355677754321 1000114699
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+--||+.+..
T Consensus 370 ~Vi~dPPr~g~~ 381 (443)
T PRK13168 370 KVLLDPPRAGAA 381 (443)
T ss_pred EEEECcCCcChH
Confidence 999999988754
No 44
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.07 E-value=0.014 Score=63.70 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=59.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||++||.||.++.+.+. |-. ..|+++|+++...+..+.+....+.....+..+|+.++.. .+ .+.|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f 321 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF 321 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence 3568999999999999887654 211 2488999999998888877655432222345677766431 11 1479
Q ss_pred cEEEecCCCCCccc
Q 008149 521 DFVICQNSVPQIPN 534 (576)
Q Consensus 521 DLVIGGpPCQ~FS~ 534 (576)
|+|+-.+||.++..
T Consensus 322 D~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 322 DKILVDAPCSGLGV 335 (444)
T ss_pred CEEEEcCCCCCCee
Confidence 99999999987654
No 45
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.02 E-value=0.026 Score=58.38 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=56.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
+.+|||++||.|.+.+.+.+..-.. .|+++|+++.+.+..+.+....+... ..+..+|+.+. + ..+.||
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD 191 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD 191 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence 4689999999999999998764222 47899999999988887765432211 12345665321 1 113699
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+.-||+-+.+
T Consensus 192 ~Iv~NPPy~~~~ 203 (284)
T TIGR03533 192 LIVSNPPYVDAE 203 (284)
T ss_pred EEEECCCCCCcc
Confidence 999999997654
No 46
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.89 E-value=0.023 Score=59.68 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=55.7
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
.+|||+.||.|.+.+.+....-. ..|+++|+++.+.+..+.+....+... ..+..+|+.+. + ..+.||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l-----~~~~fDl 204 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L-----PGRRYDL 204 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C-----CCCCccE
Confidence 58999999999999998776422 347899999999998888765432211 22345565321 1 0136999
Q ss_pred EEecCCCCCcc
Q 008149 523 VICQNSVPQIP 533 (576)
Q Consensus 523 VIGGpPCQ~FS 533 (576)
|+.-||+-+..
T Consensus 205 IvsNPPyi~~~ 215 (307)
T PRK11805 205 IVSNPPYVDAE 215 (307)
T ss_pred EEECCCCCCcc
Confidence 99999987653
No 47
>PRK14967 putative methyltransferase; Provisional
Probab=95.88 E-value=0.016 Score=57.18 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||++||.|.+.+.+.+.|. ..++++|+++.+.+..+.+....+. ...++.+|+.+. + ..+.||
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~-----~~~~fD 103 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V-----EFRPFD 103 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c-----cCCCee
Confidence 356899999999999998888875 3578999999988777766543321 122344555432 1 125799
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|+..+|-..
T Consensus 104 ~Vi~npPy~~ 113 (223)
T PRK14967 104 VVVSNPPYVP 113 (223)
T ss_pred EEEECCCCCC
Confidence 9999987443
No 48
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.79 E-value=0.022 Score=62.18 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||++||.||.+..+..+.-.-..|+++|+++...+.++.+....+.....+..+|.+++.... ....+.||
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD 327 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD 327 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence 36789999999999998877652111248899999998888887765443322234456766553110 00124799
Q ss_pred EEEecCCCCCccc
Q 008149 522 FVICQNSVPQIPN 534 (576)
Q Consensus 522 LVIGGpPCQ~FS~ 534 (576)
.|+-.+||.+...
T Consensus 328 ~Vl~DaPCSg~G~ 340 (434)
T PRK14901 328 RILLDAPCSGLGT 340 (434)
T ss_pred EEEEeCCCCcccc
Confidence 9999999988543
No 49
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.77 E-value=0.016 Score=42.40 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=29.8
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI 53 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~L 53 (576)
..+...+|+.|||+.+.+.+|++..|. + ++.=+++|
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~-n-ve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNG-N-VERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTT-S-HHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHhC
Confidence 456788999999999999999999887 5 77777775
No 50
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.74 E-value=0.025 Score=45.43 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=52.1
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 524 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVI 524 (576)
+++|+.||.|++...+...+ ...++++|+++.+....+............+...|+.+... ...+++|+|+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence 57999999999998888733 24688999999887766532211111122234456655432 1236899999
Q ss_pred ecCCCCCc
Q 008149 525 CQNSVPQI 532 (576)
Q Consensus 525 GGpPCQ~F 532 (576)
..+||..+
T Consensus 72 ~~~~~~~~ 79 (107)
T cd02440 72 SDPPLHHL 79 (107)
T ss_pred Eccceeeh
Confidence 99998874
No 51
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=95.73 E-value=0.016 Score=41.89 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=29.9
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 54 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll 54 (576)
+...+|++|||+++.+.+|++..|. + ++.-+++|+
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~~~-d-~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAANG-N-VERAAEYLL 37 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHC
Confidence 4678899999999999999999987 4 777788774
No 52
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.68 E-value=0.039 Score=57.84 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=54.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~--l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+||+|||=.|||++..-..|. +-|++||.++.+....+.++.-++.... -++..|+-+. +.. +.+.+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~ 195 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGR 195 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-
T ss_pred CCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCC
Confidence 356999999999999999989997 3488999999999999988865433211 2344565432 111 123468
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
||+||-=|| .|+
T Consensus 196 fD~IIlDPP--sF~ 207 (286)
T PF10672_consen 196 FDLIILDPP--SFA 207 (286)
T ss_dssp EEEEEE--S--SEE
T ss_pred CCEEEECCC--CCC
Confidence 999999999 665
No 53
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=95.67 E-value=0.0084 Score=61.65 Aligned_cols=51 Identities=16% Similarity=0.372 Sum_probs=46.4
Q ss_pred ccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccc
Q 008149 386 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 436 (576)
Q Consensus 386 ~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvL 436 (576)
+|+=++|-|+-|++|||.++-=-.+++...||++||||.+|.+++++++.|
T Consensus 286 ~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL 336 (338)
T KOG0919|consen 286 RLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL 336 (338)
T ss_pred HhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence 678899999999999999987667888899999999999999999988765
No 54
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.66 E-value=0.014 Score=62.20 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=45.6
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh-----hHHHhh---hc
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-----KFESLI---HK 516 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~-----~Ie~l~---~~ 516 (576)
++||||||+|.+++.|...+ +-|++||+++.+.+.-+.+-..++-....+...+..++... ++..+. ..
T Consensus 199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 79999999999999997765 45899999999988777765443322222334444443321 110000 01
Q ss_pred cCCccEEEecCC
Q 008149 517 LGSIDFVICQNS 528 (576)
Q Consensus 517 ~g~~DLVIGGpP 528 (576)
...+|+|+==||
T Consensus 276 ~~~~d~vilDPP 287 (352)
T PF05958_consen 276 SFKFDAVILDPP 287 (352)
T ss_dssp CTTESEEEE---
T ss_pred hcCCCEEEEcCC
Confidence 126899998887
No 55
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.65 E-value=0.021 Score=61.86 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=52.2
Q ss_pred CCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
+.+|||+|||+|.+++-+. ..|. ..|+++|+|+.+.+..+.|...++.....+..+|+..+ +...+.||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD 127 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD 127 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence 3689999999999998874 4564 45899999999999999877544322222344554332 11124689
Q ss_pred EEEecCC
Q 008149 522 FVICQNS 528 (576)
Q Consensus 522 LVIGGpP 528 (576)
+|+-=||
T Consensus 128 ~V~lDP~ 134 (382)
T PRK04338 128 VVDIDPF 134 (382)
T ss_pred EEEECCC
Confidence 9988766
No 56
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.63 E-value=0.024 Score=41.18 Aligned_cols=35 Identities=34% Similarity=0.383 Sum_probs=30.7
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 54 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll 54 (576)
+....|++|||+++.+..|++..+. | ++.-+++|+
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~~~~-d-~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRATNN-N-VERAVEWLL 37 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHh
Confidence 4678899999999999999999887 5 788888886
No 57
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.61 E-value=0.027 Score=55.50 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=57.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+...+....-. ..++++|+++.+.+..+.+....+.....+..+|+.+.- ..+.+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD 156 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD 156 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence 4568999999999999988876322 247899999999888887765433222234456654311 125799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+.-||+...+
T Consensus 157 ~Vi~npPy~~~~ 168 (251)
T TIGR03534 157 LIVSNPPYIPEA 168 (251)
T ss_pred EEEECCCCCchh
Confidence 999999988765
No 58
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.014 Score=64.22 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=52.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+|+|||||+|+|++.|..-. +-|.++|+++.+...-+.+=..++-....++.+|..++...-- ....+|+
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-----~~~~~d~ 365 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-----EGYKPDV 365 (432)
T ss_pred CCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----ccCCCCE
Confidence 4689999999999999988655 4589999999999888776443322222334455444432211 1136799
Q ss_pred EEecCC
Q 008149 523 VICQNS 528 (576)
Q Consensus 523 VIGGpP 528 (576)
|+==||
T Consensus 366 VvvDPP 371 (432)
T COG2265 366 VVVDPP 371 (432)
T ss_pred EEECCC
Confidence 988777
No 59
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.56 E-value=0.031 Score=61.25 Aligned_cols=86 Identities=14% Similarity=0.289 Sum_probs=60.0
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||++||.||.+..+..+ |-. -.|+++|+++...+..+.+....+.....+...|.+++.. .. .+.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~~--~~~f 308 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----YV--QDTF 308 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----hh--hccC
Confidence 3568999999999998877654 111 2489999999999999887665432222244566655431 11 1469
Q ss_pred cEEEecCCCCCcccc
Q 008149 521 DFVICQNSVPQIPNS 535 (576)
Q Consensus 521 DLVIGGpPCQ~FS~a 535 (576)
|.|+-=+||.++...
T Consensus 309 D~Vl~DaPCsg~G~~ 323 (431)
T PRK14903 309 DRILVDAPCTSLGTA 323 (431)
T ss_pred CEEEECCCCCCCccc
Confidence 999999999888653
No 60
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.49 E-value=0.062 Score=58.65 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=74.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhccCCc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~--l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
|=+||+|||=.|||++..-..|- .-|.+||++..+...-+.|..-++..+. .++.+|+-+. ++....+-..|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence 77899999999999999999998 3488999999999998888765543322 2455666543 22222222389
Q ss_pred cEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149 521 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574 (576)
Q Consensus 521 DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~ 574 (576)
||||-=|| .|+.+ .+ +. -+++..|.+++.....+
T Consensus 292 DlIilDPP--sF~r~--------------k~---~~-~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 292 DLIILDPP--SFARS--------------KK---QE-FSAQRDYKDLNDLALRL 325 (393)
T ss_pred cEEEECCc--ccccC--------------cc---cc-hhHHHHHHHHHHHHHHH
Confidence 99999999 56632 11 12 66788888888776544
No 61
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.44 E-value=0.019 Score=61.23 Aligned_cols=84 Identities=8% Similarity=0.062 Sum_probs=55.1
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH--h--hhc---
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IHK--- 516 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~--l--~~~--- 516 (576)
-+|||||||.|.+++.|.+.. +-|++||+++.+.+..+.+...++-....++.+|+.++-...... + ...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888764 258999999999999998775443222224566765543211000 0 000
Q ss_pred -cCCccEEEecCCCC
Q 008149 517 -LGSIDFVICQNSVP 530 (576)
Q Consensus 517 -~g~~DLVIGGpPCQ 530 (576)
...+|+|+=-||=.
T Consensus 276 ~~~~~d~v~lDPPR~ 290 (353)
T TIGR02143 276 KSYNCSTIFVDPPRA 290 (353)
T ss_pred ccCCCCEEEECCCCC
Confidence 01379999999943
No 62
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.26 E-value=0.019 Score=64.04 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=53.6
Q ss_pred CCCcccccCCCCChhHHHHHHcC--------CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aG--------i~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l 513 (576)
...+|+|..||+|+|-+++-... +. ..+.++|||+.+....+..+...+..+..+...|.-.-+....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~--- 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI--- 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc---
Confidence 45799999999999988875422 22 4578999999998877766543321111122222111000000
Q ss_pred hhccCCccEEEecCCCCCcc
Q 008149 514 IHKLGSIDFVICQNSVPQIP 533 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPCQ~FS 533 (576)
....+.||+|||=||=-...
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred ccccCcccEEEeCCCccccC
Confidence 01236899999999977653
No 63
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.24 E-value=0.037 Score=56.32 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=63.3
Q ss_pred HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149 418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 495 (576)
Q Consensus 418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~ 495 (576)
|.||-.|=+| ++....+.+. ...+-+|||+-||.|.++..+.+.+. -++++|+|+.....++..... ....
T Consensus 5 k~~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v 77 (258)
T PRK14896 5 KKLGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNV 77 (258)
T ss_pred CcCCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCE
Confidence 3445555333 3333333332 12356899999999999999999874 378999999998888765432 1122
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149 496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
.++.+|+.++.- ..+|+|+|-.|=+
T Consensus 78 ~ii~~D~~~~~~----------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 78 EIIEGDALKVDL----------PEFNKVVSNLPYQ 102 (258)
T ss_pred EEEEeccccCCc----------hhceEEEEcCCcc
Confidence 356778876542 3469999987744
No 64
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=94.86 E-value=0.091 Score=51.54 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||+.||.|.+...+.+. |-. ..|+++|+++...+..+......+.....+..+|+.++.. ..+.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 115 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF 115 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence 4678999999999998877654 322 2478999999887777665433222222244566655431 12479
Q ss_pred cEEEecCCCCCc
Q 008149 521 DFVICQNSVPQI 532 (576)
Q Consensus 521 DLVIGGpPCQ~F 532 (576)
|+|+.+...+.+
T Consensus 116 D~V~~~~~l~~~ 127 (231)
T TIGR02752 116 DYVTIGFGLRNV 127 (231)
T ss_pred cEEEEecccccC
Confidence 999987765554
No 65
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.60 E-value=0.063 Score=58.14 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=49.3
Q ss_pred CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+++|||+|||+|-..+-+..- |. +.|+++|+|+.|.+.++.|...++.....+...|...+-. .....|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-------~~~~~f 115 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-------YRNRKF 115 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------HhCCCC
Confidence 589999999999776555443 66 4589999999999999988754321111233344433211 112458
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|.==||
T Consensus 116 DvIdlDPf 123 (374)
T TIGR00308 116 HVIDIDPF 123 (374)
T ss_pred CEEEeCCC
Confidence 88876554
No 66
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=94.59 E-value=0.11 Score=56.78 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=58.3
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~--~~~DI~~lt~~~Ie~l~~~~g 518 (576)
.+-+|||++||.||.+.-+.++ + . ..|+++|+++...+..+.+....+.. ..+ ..+|...+.. + ...+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~-----~-~~~~ 308 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ-----W-AENE 308 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc-----c-cccc
Confidence 3578999999999999887764 3 2 24899999999988888877544322 111 2344433221 0 0125
Q ss_pred CccEEEecCCCCCcccc
Q 008149 519 SIDFVICQNSVPQIPNS 535 (576)
Q Consensus 519 ~~DLVIGGpPCQ~FS~a 535 (576)
.||.|+-.+||.++..-
T Consensus 309 ~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 309 QFDRILLDAPCSATGVI 325 (426)
T ss_pred ccCEEEEcCCCCCCccc
Confidence 79999999999998754
No 67
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.55 E-value=0.078 Score=54.64 Aligned_cols=80 Identities=14% Similarity=0.078 Sum_probs=55.9
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
.+|||++||.|.+.+.+....-. ..|.++|+++.+.+..+.+....+... ..+..+|+.+- +. ...||+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~~-----~~~fDl 185 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----LA-----GQKIDI 185 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----Cc-----CCCccE
Confidence 58999999999999988876422 247899999999988887765432221 22344555321 10 126999
Q ss_pred EEecCCCCCcc
Q 008149 523 VICQNSVPQIP 533 (576)
Q Consensus 523 VIGGpPCQ~FS 533 (576)
|+.-||.-+.+
T Consensus 186 IvsNPPyi~~~ 196 (284)
T TIGR00536 186 IVSNPPYIDEE 196 (284)
T ss_pred EEECCCCCCcc
Confidence 99999998765
No 68
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.52 E-value=0.04 Score=53.32 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCcee--------eEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLK--------GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES 512 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k--------~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~ 512 (576)
.+-.|||-|||.|++-+-....+..+. .++++|||+.+.+.-+.+-...+.... .+...|.+++..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~----- 102 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL----- 102 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG-----
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc-----
Confidence 456899999999998654333333221 167999999998888877665432221 133456665551
Q ss_pred hhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHH
Q 008149 513 LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 570 (576)
Q Consensus 513 l~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~ 570 (576)
..+.+|+||.=||= | .|-|....-..||.++++.+.+
T Consensus 103 ---~~~~~d~IvtnPPy------G------------~r~~~~~~~~~ly~~~~~~~~~ 139 (179)
T PF01170_consen 103 ---PDGSVDAIVTNPPY------G------------RRLGSKKDLEKLYRQFLRELKR 139 (179)
T ss_dssp ---TTSBSCEEEEE--S------T------------TSHCHHHHHHHHHHHHHHHHHC
T ss_pred ---ccCCCCEEEECcch------h------------hhccCHHHHHHHHHHHHHHHHH
Confidence 12579999998883 1 2222212225677777777766
No 69
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.32 E-value=0.11 Score=53.26 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=62.9
Q ss_pred hhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc
Q 008149 420 LRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV 497 (576)
Q Consensus 420 Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~ 497 (576)
+|..|-++ .+...+..+. ...+-+|||+=||.|.++..+.+.|- -|+++|+|+.....++..+.. ....+
T Consensus 20 ~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~ 91 (272)
T PRK00274 20 LGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTI 91 (272)
T ss_pred cCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEE
Confidence 45545333 3333344332 23457899999999999999998874 478999999998888765421 23346
Q ss_pred ccccccccChhhHHHhhhccCCccEEEecCC
Q 008149 498 QIEDIQALTTKKFESLIHKLGSIDFVICQNS 528 (576)
Q Consensus 498 ~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP 528 (576)
+.+|+.++...++ ..|+|+|-+|
T Consensus 92 i~~D~~~~~~~~~--------~~~~vv~NlP 114 (272)
T PRK00274 92 IEGDALKVDLSEL--------QPLKVVANLP 114 (272)
T ss_pred EEChhhcCCHHHc--------CcceEEEeCC
Confidence 6788888764321 1588999888
No 70
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.17 Score=56.77 Aligned_cols=93 Identities=18% Similarity=0.154 Sum_probs=64.1
Q ss_pred hhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCC----CCCCCCchhhhhhh-hHHHH
Q 008149 19 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDND----GTNEDKSDETLYGT-MEITL 93 (576)
Q Consensus 19 ~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~----~~ne~~~~e~~~~~-~~k~~ 93 (576)
..++|++||||.+...||+=-.|..| .+.-...|+.. .|+.|-++ ..|- +..-++. ..+..
T Consensus 561 ~I~qL~~mGfp~~~~~rAL~~tgNqD-aEsAMNWLFqH----------MdDPdlndP~~~~~~v---PKkDkeVdE~~~~ 626 (749)
T COG5207 561 LIRQLVDMGFPEEDAARALGITGNQD-AESAMNWLFQH----------MDDPDLNDPFVPPPNV---PKKDKEVDESKAR 626 (749)
T ss_pred HHHHHHHcCCCHHHHHHHHhhccCcc-hHHHHHHHHhh----------ccCcccCCCCCCCCCC---CcccccccHHHHH
Confidence 56899999999999999999999998 89999999853 22222111 1110 0000122 24777
Q ss_pred HHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149 94 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 127 (576)
Q Consensus 94 ~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A 127 (576)
+|+.|||....+..|+-.-..| +.--|+-|+-
T Consensus 627 Slle~Gln~n~~Rkal~~~n~d--~~r~V~w~~N 658 (749)
T COG5207 627 SLLENGLNPNLCRKALMDMNTD--SKRRVVWCIN 658 (749)
T ss_pred HHHHcCCCHHHHHHHHHHccCC--chheEEEEEe
Confidence 9999999999999999877766 3444444443
No 71
>PRK14968 putative methyltransferase; Provisional
Probab=94.30 E-value=0.14 Score=48.06 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-++||+.||.|.+...+.+.|. .++++|+++.+....+.+....+... ..+...|..+- + . -+.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~---~--~~~ 90 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F---R--GDK 90 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c---c--ccC
Confidence 456899999999999999888864 36889999988777766543322111 22334554321 1 1 126
Q ss_pred ccEEEecCCCCC
Q 008149 520 IDFVICQNSVPQ 531 (576)
Q Consensus 520 ~DLVIGGpPCQ~ 531 (576)
+|+|+..+|+..
T Consensus 91 ~d~vi~n~p~~~ 102 (188)
T PRK14968 91 FDVILFNPPYLP 102 (188)
T ss_pred ceEEEECCCcCC
Confidence 999999998754
No 72
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.23 E-value=0.076 Score=54.73 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=61.7
Q ss_pred hhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccccc
Q 008149 421 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQI 499 (576)
Q Consensus 421 g~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~ 499 (576)
+.++++|.+ +|.-.-.. +..-+||||=||+|.+.+.+.+-==+ .-+++||+++.+..--+++-..++... ..+++
T Consensus 26 ~~~~~~Dai--LL~~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~ 101 (248)
T COG4123 26 GFRYGTDAI--LLAAFAPV-PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE 101 (248)
T ss_pred ccccccHHH--HHHhhccc-ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence 456677743 22222111 22678999999999999988765212 236899999998776555433221111 12556
Q ss_pred ccccccChhhHHHhhhccCCccEEEecCCCCC
Q 008149 500 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQ 531 (576)
Q Consensus 500 ~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~ 531 (576)
.||.++.... .+..||+||.-||=-.
T Consensus 102 ~Di~~~~~~~------~~~~fD~Ii~NPPyf~ 127 (248)
T COG4123 102 ADIKEFLKAL------VFASFDLIICNPPYFK 127 (248)
T ss_pred hhHHHhhhcc------cccccCEEEeCCCCCC
Confidence 7777665321 2346999999888544
No 73
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.22 E-value=0.09 Score=53.12 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||+.||.|.++..+.+.+- -++++|+|+.....++..+.. .....++.+|+.++.... +...+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~ 96 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL 96 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence 457899999999999999999884 388999999998888766532 122235678887766321 11125
Q ss_pred EEEecCC
Q 008149 522 FVICQNS 528 (576)
Q Consensus 522 LVIGGpP 528 (576)
+|+|..|
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888887
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.20 E-value=0.1 Score=55.77 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=60.6
Q ss_pred HHhhhhhccccc----hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC
Q 008149 418 ESLRHCFQTDTL----GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT 493 (576)
Q Consensus 418 k~Lg~sf~vdtv----~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~ 493 (576)
..+...|+.+.+ ..+++.|.... .-+||||.||.|.+...+.+.+=.. .|.++|+++.+.+.-+.+...++..
T Consensus 170 ~~~pgvFs~~~lD~gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~ 246 (342)
T PRK09489 170 KTLPGVFSRDGLDVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLE 246 (342)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCC
Confidence 344445544433 33345444322 2379999999999998888764222 3789999999988877766543222
Q ss_pred CCccccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149 494 GELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 494 g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC 529 (576)
. .+...|+.+ .+ .+.||+|+..||=
T Consensus 247 ~-~~~~~D~~~----~~------~~~fDlIvsNPPF 271 (342)
T PRK09489 247 G-EVFASNVFS----DI------KGRFDMIISNPPF 271 (342)
T ss_pred C-EEEEccccc----cc------CCCccEEEECCCc
Confidence 2 223344422 11 2579999998884
No 75
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.15 E-value=0.16 Score=43.59 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=52.4
Q ss_pred CCcccccCCCCChhHHHHHH--cCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 008149 443 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~--aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+-+||||=||.|.+.+.+.+ .|.+ |+++|+++...+..+........ ....++.+|+ .... ...++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------~~~~~ 70 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------DFLEP 70 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------TTSSC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------ccCCC
Confidence 45799999999999999998 7764 78999999999888887632221 2223456777 2221 12357
Q ss_pred ccEEEecC
Q 008149 520 IDFVICQN 527 (576)
Q Consensus 520 ~DLVIGGp 527 (576)
+|+|+...
T Consensus 71 ~D~v~~~~ 78 (112)
T PF12847_consen 71 FDLVICSG 78 (112)
T ss_dssp EEEEEECS
T ss_pred CCEEEECC
Confidence 99999655
No 76
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.13 E-value=0.16 Score=49.96 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||+.||.|.++..|.+..-.--.|+++|+++......+.+....+.....+..+|..+.-. ..+.||
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD 148 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence 467899999999999988876532111378999999988877776654432222344566644211 124799
Q ss_pred EEEecCCCCCc
Q 008149 522 FVICQNSVPQI 532 (576)
Q Consensus 522 LVIGGpPCQ~F 532 (576)
+|+-.+++...
T Consensus 149 ~Ii~~~~~~~~ 159 (215)
T TIGR00080 149 RIYVTAAGPKI 159 (215)
T ss_pred EEEEcCCcccc
Confidence 99987776654
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.13 E-value=0.1 Score=54.06 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
.+.+|||+.||.|.+++++.++|. ..|+++|+|+.+....+.+...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH
Confidence 467899999999999999999986 4589999999998888777653
No 78
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.12 E-value=0.2 Score=43.46 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+||||.||.|.+..-+.+..=. ..++++|+++......+.+-...+.....+..+|+...... ..+.+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D 90 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD 90 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence 3568999999999999877664211 34789999999988877765433222222334554432110 114689
Q ss_pred EEEe
Q 008149 522 FVIC 525 (576)
Q Consensus 522 LVIG 525 (576)
+|+-
T Consensus 91 ~v~~ 94 (124)
T TIGR02469 91 RVFI 94 (124)
T ss_pred EEEE
Confidence 8885
No 79
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.10 E-value=0.15 Score=49.96 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=40.1
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
++..|......+.+|||+.||.|.+...+...+. .|.++|+++......+....
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence 3444442122467899999999999999988775 37899999998877766543
No 80
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.06 E-value=0.075 Score=51.37 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+++||=||||=++.|+...+- +.|+++|||+.|.+++.+|-+... -...+.+.||.++-. ..|-||
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfE-vqidlLqcdildle~--------~~g~fD 116 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFE-VQIDLLQCDILDLEL--------KGGIFD 116 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhh-hhhheeeeeccchhc--------cCCeEe
Confidence 478899999999999999999986 569999999999999987644321 111234566665432 226789
Q ss_pred EEEecCC
Q 008149 522 FVICQNS 528 (576)
Q Consensus 522 LVIGGpP 528 (576)
..+=-||
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 8887776
No 81
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=93.87 E-value=0.13 Score=49.84 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=51.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+|||+-||.|-+++.+..++-. ..|+++|+++......+.+....+.....++.+|+.++.. .+.+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence 678999999999888877655422 2388999999887777766654432222345677766521 257999
Q ss_pred EEecC
Q 008149 523 VICQN 527 (576)
Q Consensus 523 VIGGp 527 (576)
|+...
T Consensus 113 I~s~~ 117 (181)
T TIGR00138 113 ITSRA 117 (181)
T ss_pred EEehh
Confidence 98653
No 82
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.79 E-value=0.13 Score=53.56 Aligned_cols=78 Identities=18% Similarity=0.295 Sum_probs=56.8
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 524 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVI 524 (576)
+||||.+|.|-+.+++...+-. ..|+++|||+.|.++-+.|...++- .++..+..+=++. ..+.||+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~dlf~~---~~~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQSDLFEP---LRGKFDLIV 181 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEeeecccc---cCCceeEEE
Confidence 7999999999999999988754 3689999999999988887654431 2233333311111 125899999
Q ss_pred ecCCCCCcc
Q 008149 525 CQNSVPQIP 533 (576)
Q Consensus 525 GGpPCQ~FS 533 (576)
.-||==+-+
T Consensus 182 sNPPYip~~ 190 (280)
T COG2890 182 SNPPYIPAE 190 (280)
T ss_pred eCCCCCCCc
Confidence 999977766
No 83
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=93.55 E-value=0.077 Score=42.98 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=29.5
Q ss_pred ccchhhhhHHHhcCCCChHHHHHHHHHhCCC-------CcHHHHHHHHH
Q 008149 13 EGLHIEKRASLLMMNFSVNEVDFALDKLGKD-------APVYELVDFIT 54 (576)
Q Consensus 13 ~~~~s~~r~~li~MGFs~e~V~kAIqe~Ge~-------~~~~~Ile~Ll 54 (576)
.++..+...+|..|||+.+.|..|++..|=. .+.+.|||-||
T Consensus 6 ~Gi~~~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELL 54 (55)
T PF09288_consen 6 YGIDKDLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELL 54 (55)
T ss_dssp ---SHHHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHh
Confidence 4567788999999999999999999998753 24567888776
No 84
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=93.55 E-value=0.21 Score=48.71 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=50.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+|||+=||.|..++-|.+.|.+ |.++|+++.+....+..-...+.........|+.+++. .+.||+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~fD~ 98 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---------DGEYDF 98 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---------CCCcCE
Confidence 468999999999999999998874 68899999988777665433222111223455544321 146899
Q ss_pred EEecCC
Q 008149 523 VICQNS 528 (576)
Q Consensus 523 VIGGpP 528 (576)
|+....
T Consensus 99 I~~~~~ 104 (197)
T PRK11207 99 ILSTVV 104 (197)
T ss_pred EEEecc
Confidence 986543
No 85
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.51 E-value=0.063 Score=55.36 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=55.0
Q ss_pred HHhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHc------CCceeeEEEeeCCHHHHHHHHHHhhhcC
Q 008149 418 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG 491 (576)
Q Consensus 418 k~Lg~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a------Gi~~k~vvavEid~~a~~t~k~~~~~tn 491 (576)
|.+|..|+...+..++.-+-... .+-+|+|.+||.|||-+++.+. -+.-..++++|+++.+..+-+.+..-++
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred cccceeehHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 44566676666666654444332 3567999999999998887651 0112457899999999876654322111
Q ss_pred CCCC--ccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149 492 QTGE--LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 492 ~~g~--l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 532 (576)
-... .+..+|.-. .... .....+|+|+|-||=-..
T Consensus 102 ~~~~~~~i~~~d~l~--~~~~----~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 102 IDNSNINIIQGDSLE--NDKF----IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHCBGCEEEES-TTT--SHSC----TST--EEEEEEE--CTCE
T ss_pred ccccccccccccccc--cccc----ccccccccccCCCCcccc
Confidence 0011 122333211 1000 013579999999996665
No 86
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.31 E-value=0.16 Score=56.04 Aligned_cols=79 Identities=11% Similarity=0.017 Sum_probs=52.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+||||.||.|.+.+.+.+..-. ..|.++|+|+.+.+..+.+....+ ....+..+|+.+.. + ...+.||
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FD 321 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWD 321 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCcc
Confidence 3458999999999999887654211 247899999999998888765432 11224456664321 0 0124699
Q ss_pred EEEecCCC
Q 008149 522 FVICQNSV 529 (576)
Q Consensus 522 LVIGGpPC 529 (576)
+|+.-||=
T Consensus 322 LIVSNPPY 329 (423)
T PRK14966 322 IIVSNPPY 329 (423)
T ss_pred EEEECCCC
Confidence 99988873
No 87
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.03 E-value=0.17 Score=50.92 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=54.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+.+.+|||+=||.|.++..|.+.|.+ |+++|+++...+..+......+... ..++.+|+.++.. . ..+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~--~~~~ 112 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----H--LETP 112 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----h--cCCC
Confidence 45679999999999999999999864 6789999998887776544322111 1244567665532 1 1257
Q ss_pred ccEEEecCCC
Q 008149 520 IDFVICQNSV 529 (576)
Q Consensus 520 ~DLVIGGpPC 529 (576)
||+|+.....
T Consensus 113 fD~V~~~~vl 122 (255)
T PRK11036 113 VDLILFHAVL 122 (255)
T ss_pred CCEEEehhHH
Confidence 9999965443
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=92.98 E-value=0.17 Score=51.19 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=41.6
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 435 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 435 vLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
.|..+...+-+|||+-||.|.+.+.+.+.|.. .|+++|+|+.+.+..+.+..
T Consensus 112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence 33333446789999999999999999999874 38899999999887777654
No 89
>PRK07402 precorrin-6B methylase; Provisional
Probab=92.94 E-value=0.35 Score=46.70 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=37.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
.+-+|||++||.|.+...+.+++-. ..|+++|+++...+..+.+...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence 3568999999999999888765322 3488999999998888877643
No 90
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.88 E-value=0.18 Score=52.79 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=65.1
Q ss_pred HHhhhhhc--cccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCC
Q 008149 418 ESLRHCFQ--TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG 494 (576)
Q Consensus 418 k~Lg~sf~--vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn-~~g 494 (576)
|.||-.|= ...+..++..+. ...+-+|||+-||.|.++..|...+- -|+++|+|+.....++......+ ...
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~ 86 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK 86 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 45576662 234444444332 22456899999999999998887764 37899999999998887654332 122
Q ss_pred CccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149 495 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 495 ~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
..++.+|+.++.. ..+|+|++-.|=+
T Consensus 87 v~ii~~Dal~~~~----------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 87 LEVIEGDALKTEF----------PYFDVCVANVPYQ 112 (294)
T ss_pred EEEEECCHhhhcc----------cccCEEEecCCcc
Confidence 2356678765431 3579999877754
No 91
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.82 E-value=0.28 Score=52.20 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=49.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.+...|.+.|.. |+++|+++...+..+.+...... ....++.+|+.++.. ..+.|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--------~~~~F 199 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--------EGRKF 199 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--------ccCCC
Confidence 4679999999999999999998864 78999999988877765322110 011233455443321 12468
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+...
T Consensus 200 D~Vi~~~ 206 (322)
T PLN02396 200 DAVLSLE 206 (322)
T ss_pred CEEEEhh
Confidence 8887543
No 92
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=92.81 E-value=0.33 Score=46.45 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
.+-+|||+.||.|.+.+.+.+.+-. ..|.++|+++.+....+.+...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence 4678999999999999988776532 2478999999988888776543
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.73 E-value=0.3 Score=47.66 Aligned_cols=80 Identities=23% Similarity=0.204 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.++.-+.+++- .++++|+++......+.++...+.....+..+|..+. + ...+.||
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----~~~~~fD 146 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----W----PAYAPFD 146 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----C----CcCCCcC
Confidence 468999999999999887777753 3789999999888888777654322222344554321 1 1125799
Q ss_pred EEEecCCCCCc
Q 008149 522 FVICQNSVPQI 532 (576)
Q Consensus 522 LVIGGpPCQ~F 532 (576)
+|+-..+|..+
T Consensus 147 ~I~~~~~~~~~ 157 (212)
T PRK00312 147 RILVTAAAPEI 157 (212)
T ss_pred EEEEccCchhh
Confidence 99988777654
No 94
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=92.63 E-value=0.31 Score=47.52 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=37.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
.+.+|||+-||.|.+...|.+.|.. +.++|+++......+..+..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPE 107 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHh
Confidence 4678999999999999999888853 78999999988877776543
No 95
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=92.63 E-value=0.19 Score=52.87 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=54.7
Q ss_pred CcccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 444 LTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL-~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
..++|++||.|.+++++ |.++ + -.|.|+|.++.|.+.-..|-....-.|..-.+.-|. +.+.........|..|+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m--e~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM--ESDASDEHPLLEGKIDL 225 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc--ccccccccccccCceeE
Confidence 36999999999999996 5666 4 468899999999988777655433233332221121 22222222234589999
Q ss_pred EEecCCCC
Q 008149 523 VICQNSVP 530 (576)
Q Consensus 523 VIGGpPCQ 530 (576)
+++-||--
T Consensus 226 lvsNPPYI 233 (328)
T KOG2904|consen 226 LVSNPPYI 233 (328)
T ss_pred EecCCCcc
Confidence 99999853
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=92.25 E-value=0.28 Score=51.94 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=46.4
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
|.-|..+-..+.+|||+=||.|=+++|..++|- +-|+++|||+.|.++-+.|-..
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHH
Confidence 555566666889999999999999999999998 4589999999999988876543
No 97
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=92.21 E-value=0.26 Score=38.08 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh--CCCCChhhhhHh
Q 008149 90 EITLQLLEMGFSENQVSLAIEKF--GSKTPISELADK 124 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~--G~da~i~eLvD~ 124 (576)
|-+..|+.+||++.||..|+.+. +++.++++++--
T Consensus 5 d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~ 41 (47)
T PF07499_consen 5 DALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 45678999999999999999999 899998887643
No 98
>PLN02244 tocopherol O-methyltransferase
Probab=92.14 E-value=0.48 Score=50.26 Aligned_cols=74 Identities=23% Similarity=0.220 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+|||+-||.|++...|.+. |. .|.++|+++...+..+......+.. ...++.+|+.++.- .-+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~~ 186 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDGQ 186 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCCC
Confidence 4678999999999999888764 55 3688999998776665543322211 12245567766531 1257
Q ss_pred ccEEEec
Q 008149 520 IDFVICQ 526 (576)
Q Consensus 520 ~DLVIGG 526 (576)
||+|+..
T Consensus 187 FD~V~s~ 193 (340)
T PLN02244 187 FDLVWSM 193 (340)
T ss_pred ccEEEEC
Confidence 9999863
No 99
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.89 E-value=0.21 Score=51.13 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=62.8
Q ss_pred ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cccccccc
Q 008149 425 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQ 503 (576)
Q Consensus 425 ~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~ 503 (576)
++.-++-|+.--+.-.-+.-.++|-|||+||-..=|-.-|-. |+++|||+.....-+++-+-.+-+.. -++++|+-
T Consensus 77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l 153 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL 153 (263)
T ss_pred ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence 444455554433333335677999999999999999888863 78999999976655543322211111 14566665
Q ss_pred ccChhhHHHhhhccCCccEEEecCCCCCcccc
Q 008149 504 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNS 535 (576)
Q Consensus 504 ~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~a 535 (576)
++-. .+ ++.+ .-+|+|.+.||=-+-|..
T Consensus 154 d~~~-~l-q~~K--~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 154 DLAS-KL-KADK--IKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred HHHH-HH-hhhh--heeeeeecCCCCCCcchh
Confidence 4321 11 1111 237899988887776654
No 100
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=91.81 E-value=0.4 Score=46.60 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=47.7
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn-~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+|||+.||.|.+++.+.+ +|-. ..|+++|+++...+..+.+-...+ .....+..+|..++ +.. ..+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~----l~~---~~~~ 111 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI----LFT---INEK 111 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh----Hhh---cCCC
Confidence 457899999999999987754 3422 248899999998877766543322 01111223444321 111 1257
Q ss_pred ccEEEecC
Q 008149 520 IDFVICQN 527 (576)
Q Consensus 520 ~DLVIGGp 527 (576)
+|+|+-|.
T Consensus 112 ~D~V~~~~ 119 (198)
T PRK00377 112 FDRIFIGG 119 (198)
T ss_pred CCEEEECC
Confidence 99998754
No 101
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=91.77 E-value=0.33 Score=52.77 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=51.0
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC----ccccccccccChhhHHHhhhccCC
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~----l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
-+||||.||.|-+.+.+.+.+=. .-|.++|+++.+...-+.++..+ .... .+...|+.+ .+ ..+.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~-------~~--~~~~ 298 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-------GV--EPFR 298 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc-------cC--CCCC
Confidence 38999999999999988877522 24789999999999888887543 2211 122333321 11 1136
Q ss_pred ccEEEecCCC
Q 008149 520 IDFVICQNSV 529 (576)
Q Consensus 520 ~DLVIGGpPC 529 (576)
||+|+..||.
T Consensus 299 fDlIlsNPPf 308 (378)
T PRK15001 299 FNAVLCNPPF 308 (378)
T ss_pred EEEEEECcCc
Confidence 9999998885
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.61 E-value=0.4 Score=53.86 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=52.2
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
+.+|||+.||.|.+.+++...- +-..|+++|+|+.+.+..+.+....+... ..+..+|+.+ .+ ..+.||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~fD 208 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQKFD 208 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCCcc
Confidence 4689999999999998776431 11247899999999998887754332111 1123444421 11 114699
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+..||=-+.+
T Consensus 209 lIvsNPPYi~~~ 220 (506)
T PRK01544 209 FIVSNPPYISHS 220 (506)
T ss_pred EEEECCCCCCch
Confidence 999999855443
No 103
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.48 E-value=0.41 Score=49.33 Aligned_cols=72 Identities=33% Similarity=0.356 Sum_probs=52.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+++|||.=||.|=++.-+.++|. .|.++|+++.+..+-+.++..+. .. .|=...+.+ ++...-+.||
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~g---v~---i~y~~~~~e---dl~~~~~~FD 126 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESG---VN---IDYRQATVE---DLASAGGQFD 126 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhcc---cc---ccchhhhHH---HHHhcCCCcc
Confidence 479999999999999999999996 47899999999999988776442 11 122223333 3333337899
Q ss_pred EEEe
Q 008149 522 FVIC 525 (576)
Q Consensus 522 LVIG 525 (576)
+|+.
T Consensus 127 vV~c 130 (243)
T COG2227 127 VVTC 130 (243)
T ss_pred EEEE
Confidence 9983
No 104
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=91.45 E-value=0.41 Score=50.74 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=36.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~ 487 (576)
.+.+|||+-||.|.+.+.|.+.|.+ |.++|+++...+..+...
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~~ 186 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERRA 186 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHH
Confidence 4679999999999999999999863 789999999877666543
No 105
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=91.35 E-value=0.48 Score=46.49 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=53.5
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149 438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
++++.+.+|||+=||.|.+++.+.++.-. ..|+++|+++......+.+....+.....++.+|+.++.. .
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~ 110 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E 110 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence 33445789999999999988877653212 3488999999888777776655433223345566665432 2
Q ss_pred CCccEEEec
Q 008149 518 GSIDFVICQ 526 (576)
Q Consensus 518 g~~DLVIGG 526 (576)
+.+|+|+..
T Consensus 111 ~~fDlV~~~ 119 (187)
T PRK00107 111 EKFDVVTSR 119 (187)
T ss_pred CCccEEEEc
Confidence 479999963
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=91.09 E-value=0.35 Score=50.96 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=44.4
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 490 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t 490 (576)
|..|..+...+-+|||+=||.|=++++..++|.. -|+++|||+.|.++-+.|-..+
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHc
Confidence 3444444455679999999999999999999984 4899999999999888776443
No 107
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.95 E-value=0.98 Score=49.36 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=71.8
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCC--------------------------------------ceeeEEEeeCCH
Q 008149 436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGI--------------------------------------KLKGVISIETSE 477 (576)
Q Consensus 436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi--------------------------------------~~k~vvavEid~ 477 (576)
|-.+.+. -.++|-|||.|.+-+=.-..|- ++..++++|||+
T Consensus 186 lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 186 LAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 3344443 5799999999987543333331 122477999999
Q ss_pred HHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCC
Q 008149 478 TNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDF 556 (576)
Q Consensus 478 ~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~ 556 (576)
...+.-+.|.......+.+ +...|++.+... +..+|+||+-||= |.|.|-...
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPY------------------GeRlg~~~~ 318 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPY------------------GERLGSEAL 318 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCc------------------chhcCChhh
Confidence 9999999998877543333 345777777653 2478999988882 334443323
Q ss_pred CcchHHHHHHHHHHh
Q 008149 557 DFSLYYEFVRVVQRV 571 (576)
Q Consensus 557 Rs~Lf~EyvRIV~~v 571 (576)
-..||-+|.+.+++.
T Consensus 319 v~~LY~~fg~~lk~~ 333 (381)
T COG0116 319 VAKLYREFGRTLKRL 333 (381)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355999999888554
No 108
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.38 E-value=0.25 Score=52.47 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=43.4
Q ss_pred hccccccCCCCCcccccCCCCChhHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~sl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
++|+ +++..+-.|+|||||||=|.+ -+-.+|. +.|+|+|+||.+...+++.-+.
T Consensus 186 ~Rv~-~~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~~ 240 (351)
T KOG1227|consen 186 KRVL-NTSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAEA 240 (351)
T ss_pred HHhh-hcccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHHh
Confidence 3444 344556779999999999999 6779998 5699999999999999986543
No 109
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=90.23 E-value=0.53 Score=47.81 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH-HHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~-t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.||++..+.+.|. +.|++||+++.-.. .++. +..-..+...||+.++.+++. ..+..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~ 144 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF 144 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence 567899999999999999999986 55899999985322 2221 111112345677777665552 123467
Q ss_pred cEEEec
Q 008149 521 DFVICQ 526 (576)
Q Consensus 521 DLVIGG 526 (576)
|+++-+
T Consensus 145 DvsfiS 150 (228)
T TIGR00478 145 DVSFIS 150 (228)
T ss_pred eEEEee
Confidence 776644
No 110
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.12 E-value=0.9 Score=44.23 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=51.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+|||+=||.|-.++-|.+.|.+ |.++|+++.+.+..+......+.. ......|+.... + .+.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~---~------~~~fD~ 97 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA---L------NEDYDF 97 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc---c------cCCCCE
Confidence 468999999999999999888874 789999999888776654332211 112233443221 1 136899
Q ss_pred EEecCCCCCc
Q 008149 523 VICQNSVPQI 532 (576)
Q Consensus 523 VIGGpPCQ~F 532 (576)
|+...+.-.+
T Consensus 98 I~~~~~~~~~ 107 (195)
T TIGR00477 98 IFSTVVFMFL 107 (195)
T ss_pred EEEecccccC
Confidence 9877655433
No 111
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=90.06 E-value=0.57 Score=45.93 Aligned_cols=82 Identities=21% Similarity=0.152 Sum_probs=53.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccc-cccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI-~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.+...+.+.. +-..++++|+++......+.+..........++.+|+ ..+. ... ..+.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~~-~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DMF-PDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HHc-Ccccc
Confidence 35789999999999999886653 2235899999999988887766443222223455666 3322 111 12579
Q ss_pred cEEEecCCCC
Q 008149 521 DFVICQNSVP 530 (576)
Q Consensus 521 DLVIGGpPCQ 530 (576)
|+|+--+|.+
T Consensus 113 D~V~~~~~~p 122 (202)
T PRK00121 113 DRIYLNFPDP 122 (202)
T ss_pred ceEEEECCCC
Confidence 9999766543
No 112
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=90.01 E-value=0.38 Score=49.13 Aligned_cols=99 Identities=20% Similarity=0.171 Sum_probs=66.0
Q ss_pred Hhhhhh--ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc
Q 008149 419 SLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 496 (576)
Q Consensus 419 ~Lg~sf--~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l 496 (576)
.+|-.| +..++..+.+.+... .+.+||++-+|.|-++..|...| +-++++|+|+.....++..+. ......
T Consensus 7 ~~gQnFL~~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~ 79 (262)
T PF00398_consen 7 SLGQNFLVDPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVE 79 (262)
T ss_dssp GCTSSEEEHHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEE
T ss_pred CCCcCeeCCHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccce
Confidence 344444 222344444444322 56889999999999999999998 458899999999998887543 122233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149 497 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC 529 (576)
++.+|+-+++..... .....+|+|--|=
T Consensus 80 vi~~D~l~~~~~~~~-----~~~~~~vv~NlPy 107 (262)
T PF00398_consen 80 VINGDFLKWDLYDLL-----KNQPLLVVGNLPY 107 (262)
T ss_dssp EEES-TTTSCGGGHC-----SSSEEEEEEEETG
T ss_pred eeecchhccccHHhh-----cCCceEEEEEecc
Confidence 667999888764421 2356778887773
No 113
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.98 E-value=1.4 Score=49.15 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=56.3
Q ss_pred HHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhh-hHHHHHHHhcCC
Q 008149 22 SLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGT-MEITLQLLEMGF 100 (576)
Q Consensus 22 ~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~-~~k~~~L~~MGF 100 (576)
.|++|||..+.+..|++.+ +++ ...-|+.|-.-+. ...+ | .++.-.+. -.++..|+.|||
T Consensus 381 rL~~mGyer~la~eaL~r~-~Nd-i~~aldllq~esd-------------el~~-n---~~~~p~~vd~~~la~Lv~mGF 441 (568)
T KOG2561|consen 381 RLVSMGYERELAAEALRRN-END-IQKALDLLQDESD-------------ELES-N---KPKRPEQVDGISLAELVSMGF 441 (568)
T ss_pred HHHhcchHhHHHHHHHHhc-cCc-HHHHHHhcCCcch-------------hhhc-c---CCCCCcccchhhHHHHHHhcc
Confidence 6889999999999999984 334 6677776652100 0110 0 11111111 136679999999
Q ss_pred CHHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149 101 SENQVSLAIEKFGSKTPISELADKIFSG 128 (576)
Q Consensus 101 seeEas~AI~r~G~da~i~eLvD~I~Aa 128 (576)
.+--|..|++-.|.. ++....++.++
T Consensus 442 ~e~~A~~ALe~~gnn--~~~a~~~L~~s 467 (568)
T KOG2561|consen 442 EEGKARSALEAGGNN--EDTAQRLLSAS 467 (568)
T ss_pred ccchHHHHHHhcCCc--HHHHHHHHHHh
Confidence 999999999999986 55555555544
No 114
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=89.82 E-value=0.69 Score=46.18 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 483 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~ 483 (576)
+.+-+||++.||.|--.+-|.+.|++ |+++|+++.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF 72 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence 45679999999999999999999995 78999999998754
No 115
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=89.69 E-value=0.83 Score=53.29 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=37.5
Q ss_pred eEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCccEEEecCC
Q 008149 469 GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 528 (576)
Q Consensus 469 ~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP 528 (576)
.++++|+|+.+...-+.|....+.... .+..+|+.++.... ..+.+|+|+.=||
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP 312 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP 312 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence 378999999999999998876543332 24567777664311 1146899998887
No 116
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.59 E-value=0.97 Score=44.71 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
..+-+|||+-||.|.++.-+.++ |- -..|+++|+++......+.++...+.....+..+|..+... ..+.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------~~~~ 145 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------ENAP 145 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------cCCC
Confidence 34689999999999999777654 32 12488999999988888777654322222244556543221 1257
Q ss_pred ccEEEec
Q 008149 520 IDFVICQ 526 (576)
Q Consensus 520 ~DLVIGG 526 (576)
||+|+-+
T Consensus 146 fD~I~~~ 152 (212)
T PRK13942 146 YDRIYVT 152 (212)
T ss_pred cCEEEEC
Confidence 8888744
No 117
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.30 E-value=1.2 Score=43.68 Aligned_cols=82 Identities=20% Similarity=0.107 Sum_probs=51.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+|||+.||.|..+.-+.++ +- -..|+++|+++......+.+....+... ..+..+|..+.-. ..+.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~ 142 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP 142 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence 3578999999999998776653 21 1248999999987776665554332211 1234566654221 1257
Q ss_pred ccEEEecCCCCCc
Q 008149 520 IDFVICQNSVPQI 532 (576)
Q Consensus 520 ~DLVIGGpPCQ~F 532 (576)
||+|+-+..+..+
T Consensus 143 fD~Ii~~~~~~~~ 155 (205)
T PRK13944 143 FDAIIVTAAASTI 155 (205)
T ss_pred ccEEEEccCcchh
Confidence 9999877665443
No 118
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=89.25 E-value=1 Score=44.69 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=47.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~-~~Ie~l~~~~g~ 519 (576)
+.+-+||||=||.|+++..+.+..-.-..|++||+++.. +.++..++.+|+.+... ++|.+.. ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCC
Confidence 346689999999999987665542122358999999831 12344467889887542 2222211 1367
Q ss_pred ccEEEec
Q 008149 520 IDFVICQ 526 (576)
Q Consensus 520 ~DLVIGG 526 (576)
+|+|+..
T Consensus 118 ~D~V~S~ 124 (209)
T PRK11188 118 VQVVMSD 124 (209)
T ss_pred CCEEecC
Confidence 9999974
No 119
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=89.20 E-value=0.54 Score=45.38 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=53.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+||||-||.|.++..+.+.|... .+.++|+++...+..+.... ....+..+|+.++.. .-+.+|+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD~ 101 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFDL 101 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCceeE
Confidence 4789999999999999999888543 47899999988776655332 111234567665431 1146899
Q ss_pred EEecCCCCCc
Q 008149 523 VICQNSVPQI 532 (576)
Q Consensus 523 VIGGpPCQ~F 532 (576)
|+....++.+
T Consensus 102 vi~~~~l~~~ 111 (240)
T TIGR02072 102 IVSNLALQWC 111 (240)
T ss_pred EEEhhhhhhc
Confidence 9987766543
No 120
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.80 E-value=1 Score=46.48 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.5
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
-+|||+=||.|...+-|.+.|.+ |.++|+++.+....+.....
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence 38999999999999999888974 68999999998887766543
No 121
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=88.76 E-value=0.96 Score=34.95 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=30.5
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHh--CCCCcHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKL--GKDAPVYELVDFIT 54 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~--Ge~~~~~~Ile~Ll 54 (576)
.++..+.|++.||++.+|.+|+++. +++.++++++-.-|
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 4678899999999999999999999 67776777765444
No 122
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=88.65 E-value=0.88 Score=39.03 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=50.6
Q ss_pred ccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 446 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 446 VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
||||=||.|-....|... |.+ ..+.++|+++.+....+++....+. ...+...|++++.. ..+.+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~--------~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF--------SDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH--------HSSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc--------cCCCeeE
Confidence 689999999999888876 432 3578999999998888876643322 33457789877532 2358999
Q ss_pred EEe-cCCCCCcc
Q 008149 523 VIC-QNSVPQIP 533 (576)
Q Consensus 523 VIG-GpPCQ~FS 533 (576)
|+. |..-+-|+
T Consensus 71 v~~~~~~~~~~~ 82 (101)
T PF13649_consen 71 VVCSGLSLHHLS 82 (101)
T ss_dssp EEE-TTGGGGSS
T ss_pred EEEcCCccCCCC
Confidence 997 44333344
No 123
>PRK10742 putative methyltransferase; Provisional
Probab=88.47 E-value=1.7 Score=45.12 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=55.9
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccCCcc
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~--~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+|||+|+|.|..+.=+-.+|.. |..+|-++.....++.......+...+. +...|+=+..+.+.-+......||
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD 166 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence 48999999999998888888984 7899999999999987765432211111 012243334443332222224699
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|.-=||=..
T Consensus 167 VVYlDPMfp~ 176 (250)
T PRK10742 167 VVYLDPMFPH 176 (250)
T ss_pred EEEECCCCCC
Confidence 9999987443
No 124
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.28 E-value=1.3 Score=47.97 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=52.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccc-ccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQI-EDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~-~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.|-.|||=|||.||+-+-.-..|.. ++++||+....+=-+.|.+..+-.+-.+.. .|++++. +.+ ..|
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~v 265 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NSV 265 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Ccc
Confidence 3567999999999999988899985 678899988766555554433212221222 3666665 211 149
Q ss_pred cEEEecCCC
Q 008149 521 DFVICQNSV 529 (576)
Q Consensus 521 DLVIGGpPC 529 (576)
|-|+.=||=
T Consensus 266 daIatDPPY 274 (347)
T COG1041 266 DAIATDPPY 274 (347)
T ss_pred ceEEecCCC
Confidence 999999984
No 125
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=88.05 E-value=1.1 Score=44.85 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=55.3
Q ss_pred ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 008149 425 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 504 (576)
Q Consensus 425 ~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~ 504 (576)
|......+++.|.. ...-+|||+=||.|.+...|...|. .++++|+++...+..+... ....++.+|+.+
T Consensus 27 q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~-----~~~~~~~~d~~~ 96 (251)
T PRK10258 27 QRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKD-----AADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhC-----CCCCEEEcCccc
Confidence 33333334455543 2346799999999999988888774 4789999999877665421 112245677766
Q ss_pred cChhhHHHhhhccCCccEEEecCC
Q 008149 505 LTTKKFESLIHKLGSIDFVICQNS 528 (576)
Q Consensus 505 lt~~~Ie~l~~~~g~~DLVIGGpP 528 (576)
+.- .-+.||+|+...+
T Consensus 97 ~~~--------~~~~fD~V~s~~~ 112 (251)
T PRK10258 97 LPL--------ATATFDLAWSNLA 112 (251)
T ss_pred CcC--------CCCcEEEEEECch
Confidence 531 1146899986543
No 126
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=87.92 E-value=0.57 Score=50.93 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=43.9
Q ss_pred hccccchhhhccccccCCCCCcccccCCCCC--hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 424 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 424 f~vdtv~~~lsvLK~~f~~~l~VLsLFSGiG--G~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
.++-.+. .+++++.-...++++||-+||+| |+.++.+-.|. ..|+++|+|+.|.+..+.|-+-
T Consensus 32 lsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~~ 96 (377)
T PF02005_consen 32 LSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLEL 96 (377)
T ss_dssp HHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHHH
T ss_pred eeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHhh
Confidence 4554444 45666665556799999999999 99999997776 4689999999999999987643
No 127
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=87.90 E-value=1.5 Score=44.90 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=46.7
Q ss_pred hhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEE
Q 008149 393 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI 471 (576)
Q Consensus 393 ~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-aGi~~k~vv 471 (576)
.=.|+|||.-.-|+- ++..++.. ++.|. .+.+.+|||+=||.|+....+.. .|. .|.
T Consensus 22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~ 79 (263)
T PTZ00098 22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH 79 (263)
T ss_pred hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence 345788887655553 44444332 22221 23567899999999998877744 354 378
Q ss_pred EeeCCHHHHHHHHHH
Q 008149 472 SIETSETNRRILKRW 486 (576)
Q Consensus 472 avEid~~a~~t~k~~ 486 (576)
++|+++......+..
T Consensus 80 giD~s~~~~~~a~~~ 94 (263)
T PTZ00098 80 GVDICEKMVNIAKLR 94 (263)
T ss_pred EEECCHHHHHHHHHH
Confidence 999999877666654
No 128
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=87.84 E-value=1.2 Score=44.71 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 483 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~ 483 (576)
+.+-+||++.||.|--.+-|...|++ |++||+++.|++.+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~ 75 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF 75 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence 44679999999999999999999985 78999999998764
No 129
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=87.83 E-value=1.2 Score=43.76 Aligned_cols=44 Identities=30% Similarity=0.278 Sum_probs=35.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
.+.+||++.||.|.+...+.+.|.. ++++|+++......+....
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~ 91 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHAL 91 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHHH
Confidence 4678999999999999988888853 6889999998776665543
No 130
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=87.82 E-value=1.8 Score=44.28 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhh---hcCCCCCccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~---~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+|||+-||.|.+...+.+. |-. ..|+++|+++...+..+.... ........++.+|+.++.-. -
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~--------~ 143 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD--------D 143 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC--------C
Confidence 4678999999999998877653 422 247899999998776654221 00111122456777665421 1
Q ss_pred CCccEEEecCC
Q 008149 518 GSIDFVICQNS 528 (576)
Q Consensus 518 g~~DLVIGGpP 528 (576)
+.||+|+.+.-
T Consensus 144 ~sfD~V~~~~~ 154 (261)
T PLN02233 144 CYFDAITMGYG 154 (261)
T ss_pred CCEeEEEEecc
Confidence 46999986543
No 131
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=87.82 E-value=1.6 Score=42.37 Aligned_cols=82 Identities=20% Similarity=0.104 Sum_probs=53.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
..++||+=||.|.+.+.+.+..= -..++++|+++......+++....+.....++.+|+.++....+ ..+.+|.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-----~~~~~d~ 90 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-----PDGSLSK 90 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-----CCCceeE
Confidence 45799999999999988887642 23589999999877665555443322222345567765432111 1246999
Q ss_pred EEecCCCC
Q 008149 523 VICQNSVP 530 (576)
Q Consensus 523 VIGGpPCQ 530 (576)
|+--+|.-
T Consensus 91 v~~~~pdp 98 (194)
T TIGR00091 91 VFLNFPDP 98 (194)
T ss_pred EEEECCCc
Confidence 99887744
No 132
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=87.51 E-value=1.5 Score=42.02 Aligned_cols=74 Identities=22% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...+.+.+-....++++|+++......+.... . .....+..+|+.++.. ..+.+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~--------~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPF--------EDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCC--------CCCcEE
Confidence 46789999999999999888776431357899999988777766542 1 1112244567665431 114688
Q ss_pred EEEe
Q 008149 522 FVIC 525 (576)
Q Consensus 522 LVIG 525 (576)
+|+.
T Consensus 109 ~i~~ 112 (223)
T TIGR01934 109 AVTI 112 (223)
T ss_pred EEEE
Confidence 8874
No 133
>PRK05785 hypothetical protein; Provisional
Probab=87.43 E-value=1.3 Score=44.26 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||+=||.|-+...|.+.+ . ..|+++|+++...+.-+. . .. ...+|..++.-. -+.||
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~----~---~~-~~~~d~~~lp~~--------d~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLV----A---DD-KVVGSFEALPFR--------DKSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHh----c---cc-eEEechhhCCCC--------CCCEE
Confidence 35789999999999888888773 1 247899999998765442 1 11 235666655321 25799
Q ss_pred EEEecCCCCCc
Q 008149 522 FVICQNSVPQI 532 (576)
Q Consensus 522 LVIGGpPCQ~F 532 (576)
+|+.++-.+.+
T Consensus 113 ~v~~~~~l~~~ 123 (226)
T PRK05785 113 VVMSSFALHAS 123 (226)
T ss_pred EEEecChhhcc
Confidence 99987755443
No 134
>PRK00811 spermidine synthase; Provisional
Probab=87.19 E-value=1 Score=46.69 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=52.9
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI 514 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~~~DI~~lt~~~Ie~l~ 514 (576)
+++-+||+|-+|.|++..-+.+. +. +-|..||+|+...+..+.++...+ .+...++.+|..+.-.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence 45678999999999998766554 54 458899999999999998875321 1122244566544221
Q ss_pred hccCCccEEEecC
Q 008149 515 HKLGSIDFVICQN 527 (576)
Q Consensus 515 ~~~g~~DLVIGGp 527 (576)
...+.+|+|+.-.
T Consensus 146 ~~~~~yDvIi~D~ 158 (283)
T PRK00811 146 ETENSFDVIIVDS 158 (283)
T ss_pred hCCCcccEEEECC
Confidence 1135799999854
No 135
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=87.18 E-value=1.3 Score=49.51 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=58.5
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||-||=+..+..+ +-. -.++|+|+++.-.++++.+-+..+.....+...|.+++.. . ..+.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence 4678999999999999877653 111 1488999999988898887665432222233445444321 1 11469
Q ss_pred cEEEecCCCCCcccc
Q 008149 521 DFVICQNSVPQIPNS 535 (576)
Q Consensus 521 DLVIGGpPCQ~FS~a 535 (576)
|.|+==.||.+...-
T Consensus 185 D~ILvDaPCSG~G~~ 199 (470)
T PRK11933 185 DAILLDAPCSGEGTV 199 (470)
T ss_pred CeEEEcCCCCCCccc
Confidence 999999999987643
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=86.69 E-value=1.7 Score=43.85 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=56.9
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccCh
Q 008149 430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT 507 (576)
Q Consensus 430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~ 507 (576)
+.+|+.|-...+ +-+||++.+|+|...+.+.++ +-. -.|+++|+++.+.+..+.+|...+... ..++.+|..++
T Consensus 57 g~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 57 GLFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred HHHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 444444444443 457999999999866655442 212 248899999999999999998765322 12345666432
Q ss_pred hhHHHhhhc--cCCccEEEecC
Q 008149 508 KKFESLIHK--LGSIDFVICQN 527 (576)
Q Consensus 508 ~~Ie~l~~~--~g~~DLVIGGp 527 (576)
+..+... .+.||+|+-..
T Consensus 133 --L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 133 --LDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred --HHHHHhCCCCCCCCEEEECC
Confidence 2222221 25799988654
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=86.64 E-value=1.5 Score=42.61 Aligned_cols=43 Identities=37% Similarity=0.359 Sum_probs=35.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~ 487 (576)
.+.+|||+-||.|.+...+.+.|.. ++++|+++......+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence 3688999999999999888888763 788999998776666544
No 138
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.23 E-value=0.85 Score=43.54 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=31.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 483 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~ 483 (576)
+.+=.|||.|+|.|...++..++|-+ .+++|+++..+++-
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA 229 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence 34566999999999999999999954 68899999976654
No 139
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.04 E-value=2.1 Score=41.54 Aligned_cols=76 Identities=21% Similarity=0.167 Sum_probs=50.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
+.+|||+-||.|++...+...+-....++++|+++......+.++...+.. ...+...|+.++.. ..+.+|
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D 123 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSFD 123 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCcc
Confidence 578999999999999888877621245789999998877777665432111 12234466655431 124688
Q ss_pred EEEec
Q 008149 522 FVICQ 526 (576)
Q Consensus 522 LVIGG 526 (576)
+|+..
T Consensus 124 ~I~~~ 128 (239)
T PRK00216 124 AVTIA 128 (239)
T ss_pred EEEEe
Confidence 88753
No 140
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=85.27 E-value=1.9 Score=43.14 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=49.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+=||.|.+...|.+.. +-..|+++|+++...+..+.... ...++.+|+.++.. .+.+|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~~~---------~~~fD 95 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASWQP---------PQALD 95 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhccCC---------CCCcc
Confidence 46789999999999988887652 12358899999998877765431 12244567655432 13688
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
+|+.....+
T Consensus 96 ~v~~~~~l~ 104 (258)
T PRK01683 96 LIFANASLQ 104 (258)
T ss_pred EEEEccChh
Confidence 888766544
No 141
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=85.20 E-value=2.1 Score=44.62 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=59.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+|||+.||-||=+..+..+-..--.++|+|+++.-...++.+....+.....+...|-+++..... ...||.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------~~~fd~ 159 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ESKFDR 159 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------TTTEEE
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------ccccch
Confidence 56799999999999877766544234589999999999999887665543332222344444432221 125999
Q ss_pred EEecCCCCCcccc
Q 008149 523 VICQNSVPQIPNS 535 (576)
Q Consensus 523 VIGGpPCQ~FS~a 535 (576)
|+-=.||.+....
T Consensus 160 VlvDaPCSg~G~i 172 (283)
T PF01189_consen 160 VLVDAPCSGLGTI 172 (283)
T ss_dssp EEEECSCCCGGGT
T ss_pred hhcCCCccchhhh
Confidence 9999999997543
No 142
>PLN02672 methionine S-methyltransferase
Probab=85.10 E-value=1.3 Score=54.28 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=37.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
+.+|+||=||.|-+.+.+...+= ...|+++||++.+...-+.|...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 45899999999999999877642 23589999999999988887653
No 143
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=84.93 E-value=0.53 Score=46.80 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=34.0
Q ss_pred hccccccCC--CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149 433 LSVLKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 433 lsvLK~~f~--~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~ 487 (576)
+..+.+++| ..-+++|+|+|.|+..+.+...+ ..|+..|+++.....++...
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHH
Confidence 334455666 47889999999999888776544 45788999999888877443
No 144
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=84.77 E-value=2.5 Score=45.15 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=46.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+..-+.++.-.-..|+++|+++......+......+.....++.+|..+... ..+.+|
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD 151 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD 151 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence 467899999999999887766431111378999999876655554433322222234556543221 124577
Q ss_pred EEEec
Q 008149 522 FVICQ 526 (576)
Q Consensus 522 LVIGG 526 (576)
+|+-+
T Consensus 152 ~Ii~~ 156 (322)
T PRK13943 152 VIFVT 156 (322)
T ss_pred EEEEC
Confidence 77754
No 145
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=84.59 E-value=1.9 Score=43.31 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||+=||.|.+...+.+..-. ..|+++|+++...+.-+. .+..++.+|+.++.. .+.||
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~---------~~~fD 91 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDWKP---------KPDTD 91 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC---------CCCce
Confidence 4578999999999999888876311 237899999988765542 122345677765431 25799
Q ss_pred EEEecCCCCCc
Q 008149 522 FVICQNSVPQI 532 (576)
Q Consensus 522 LVIGGpPCQ~F 532 (576)
+|+.....+-+
T Consensus 92 ~v~~~~~l~~~ 102 (255)
T PRK14103 92 VVVSNAALQWV 102 (255)
T ss_pred EEEEehhhhhC
Confidence 99998776544
No 146
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=83.60 E-value=1.7 Score=41.99 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=48.9
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhh
Q 008149 436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLI 514 (576)
Q Consensus 436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~-lt~~~Ie~l~ 514 (576)
+.+..+.+.+|||+-||.|.+...+.+.+. ..++++|+++.+....+. . +..++..|+.+ +.. +
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~--~---- 71 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA--F---- 71 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc--c----
Confidence 344455667899999999999988865432 135789999987655432 1 11234455543 110 0
Q ss_pred hccCCccEEEecCCCCCc
Q 008149 515 HKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 515 ~~~g~~DLVIGGpPCQ~F 532 (576)
.-+.+|+|+.....+.+
T Consensus 72 -~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 72 -PDKSFDYVILSQTLQAT 88 (194)
T ss_pred -CCCCcCEEEEhhHhHcC
Confidence 11357888877655443
No 147
>PRK08317 hypothetical protein; Provisional
Probab=83.14 E-value=3.7 Score=39.43 Aligned_cols=45 Identities=27% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 486 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~ 486 (576)
.+.+|||+-||.|++...+.+....-..++++|+++......+..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 467899999999999888876531223578999998876655543
No 148
>PRK04148 hypothetical protein; Provisional
Probab=83.08 E-value=2.4 Score=40.09 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=49.5
Q ss_pred CCcccccCCCCCh-hHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGG-AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG-~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
+.+++++=+|.|. +...|.++|++ |.++|+++.+....+.. +..+..+|+.+-+.+ .++++|
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~---ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~-------~y~~a~ 79 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFD---VIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE-------IYKNAK 79 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCE---EEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH-------HHhcCC
Confidence 4789999999776 78889999985 68999999987665532 334667888765532 235677
Q ss_pred EEEecCC
Q 008149 522 FVICQNS 528 (576)
Q Consensus 522 LVIGGpP 528 (576)
+|----|
T Consensus 80 liysirp 86 (134)
T PRK04148 80 LIYSIRP 86 (134)
T ss_pred EEEEeCC
Confidence 7765444
No 149
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=83.05 E-value=3.2 Score=41.35 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 486 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~ 486 (576)
+-++|||=||-|.=++=|.+.|++ |.|+|+++.+...++..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~ 71 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRL 71 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHH
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHH
Confidence 468999999999999999999996 68999999998877654
No 150
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=82.90 E-value=2.7 Score=42.66 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=43.8
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|=++..+.+ +|-.. -|+++|+++.-.+.-+.--.+..........+|..++.-.+ +.|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--------~sf 117 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--------NSF 117 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--------T-E
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--------Cce
Confidence 467999999999998887765 45332 47899999887766654332222222234567877775321 479
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+.++
T Consensus 118 D~v~~~f 124 (233)
T PF01209_consen 118 DAVTCSF 124 (233)
T ss_dssp EEEEEES
T ss_pred eEEEHHh
Confidence 9999776
No 151
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=82.87 E-value=3.5 Score=42.41 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=53.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.|.+|||+-||.|=+.+.+.+..=.- -|+++|+++.-.+.-+.-..+.+..+.-++.+|..+|.-. -..||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~--------D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP--------DNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC--------CCccC
Confidence 58999999999999998887643233 4789999988766655432222111122346776666521 14789
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+-++==+++.
T Consensus 122 ~vt~~fglrnv~ 133 (238)
T COG2226 122 AVTISFGLRNVT 133 (238)
T ss_pred EEEeeehhhcCC
Confidence 998877555554
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=82.56 E-value=3.8 Score=43.86 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChhHHHHH--HcCCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCc-c-ccccccccChhhHHHhhhc
Q 008149 442 GGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL-V-QIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~--~aGi~~k~vvavEid~~a~~t~k~~~~~t-n~~g~l-~-~~~DI~~lt~~~Ie~l~~~ 516 (576)
.+.++||+=||+|++..-+- .-|. .++++|||+.+...-+.+-..+ +..+.+ + ...|...+- ..+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~---~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGW---RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCC---EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence 45889999999998865443 3354 3689999999998888776543 222211 1 112222221 111112
Q ss_pred cCCccEEEecCCC
Q 008149 517 LGSIDFVICQNSV 529 (576)
Q Consensus 517 ~g~~DLVIGGpPC 529 (576)
.+.||+|+.=||=
T Consensus 187 ~~~fDlivcNPPf 199 (321)
T PRK11727 187 NERFDATLCNPPF 199 (321)
T ss_pred CCceEEEEeCCCC
Confidence 3579999988883
No 153
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.45 E-value=1.6 Score=47.91 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+||||-||.|.+...|.+.+. .|+++|+++.....-+.. ........++..|+.+.... + ..+.||+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~ 106 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLN-I-----SDGSVDL 106 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccC-C-----CCCCEEE
Confidence 45899999999999999988764 478999999876543321 11111122445666432210 1 1247999
Q ss_pred EEecCCCCCcc
Q 008149 523 VICQNSVPQIP 533 (576)
Q Consensus 523 VIGGpPCQ~FS 533 (576)
|+...++.-++
T Consensus 107 I~~~~~l~~l~ 117 (475)
T PLN02336 107 IFSNWLLMYLS 117 (475)
T ss_pred EehhhhHHhCC
Confidence 99888776544
No 154
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=81.89 E-value=3.4 Score=41.84 Aligned_cols=77 Identities=23% Similarity=0.219 Sum_probs=47.0
Q ss_pred CCCCcccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL-~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+.+-+|||+=||.|...+-+ ...|-.. .|+++|+++......+.+....+.....+..+|+.+++- .-+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~-~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--------~~~~ 146 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTG-KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--------ADNS 146 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCC-EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------CCCc
Confidence 35679999999987655433 3445432 478999999988877766543322222234466655431 1146
Q ss_pred ccEEEec
Q 008149 520 IDFVICQ 526 (576)
Q Consensus 520 ~DLVIGG 526 (576)
||+|+..
T Consensus 147 fD~Vi~~ 153 (272)
T PRK11873 147 VDVIISN 153 (272)
T ss_pred eeEEEEc
Confidence 8888854
No 155
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=81.54 E-value=4.4 Score=41.58 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=36.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
++-+||+|.+|.|++...+.+.+ ....+..+|+|+...+..+.++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence 44599999999999887766554 235588999999988888877643
No 156
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=81.47 E-value=2.3 Score=42.62 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=59.8
Q ss_pred ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 008149 425 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 504 (576)
Q Consensus 425 ~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~ 504 (576)
+...++..+..|+ ...+.+||++-||.|=++.-|..+.-+.-.|+++|+++.....-+.++...+.....+..+|...
T Consensus 57 ~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 3346666677776 45689999999999977766665522323478999999877766666654433233345666543
Q ss_pred cChhhHHHhhhccCCccEEEecCCCCCc
Q 008149 505 LTTKKFESLIHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 505 lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 532 (576)
--. ..++||.|+-+.-|...
T Consensus 135 g~~--------~~apfD~I~v~~a~~~i 154 (209)
T PF01135_consen 135 GWP--------EEAPFDRIIVTAAVPEI 154 (209)
T ss_dssp TTG--------GG-SEEEEEESSBBSS-
T ss_pred ccc--------cCCCcCEEEEeeccchH
Confidence 221 23689999988776543
No 157
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.16 E-value=2.4 Score=47.23 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=57.1
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh-----hhcccccccCCCCCCCCCCCCCCCchhhhhh---
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA-----QISENFEKETDDAPHDNDGTNEDKSDETLYG--- 87 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~-----q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~--- 87 (576)
.++..+.+++|||-++....|+..+-. + ++.-+.||..- |.=++....+-. -+ -+-.++
T Consensus 303 ~d~~lsllv~mGfeesdaRlaLRsc~g-~-Vd~AvqfI~erre~laq~R~k~~a~Ere-------~~----~r~k~~n~~ 369 (568)
T KOG2561|consen 303 NDETLSLLVGMGFEESDARLALRSCNG-D-VDSAVQFIIERREKLAQKREKDLARERE-------IL----ERKKYGNTP 369 (568)
T ss_pred cchHHHHHHHcCCCchHHHHHHHhccc-c-HHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HH----HHHHhcCCC
Confidence 456788999999999999999999733 5 88999999832 111111100000 00 000111
Q ss_pred -----hhHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149 88 -----TMEITLQLLEMGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 88 -----~~~k~~~L~~MGFseeEas~AI~r~G~d 115 (576)
.+..+..|+.|||..+-|..|+.|-.+|
T Consensus 370 ~~~wvn~rs~~rL~~mGyer~la~eaL~r~~Nd 402 (568)
T KOG2561|consen 370 MKKWVNPRSLERLVSMGYERELAAEALRRNEND 402 (568)
T ss_pred cccccCHHHHHHHHhcchHhHHHHHHHHhccCc
Confidence 2345668999999999999999996554
No 158
>PRK06202 hypothetical protein; Provisional
Probab=80.93 E-value=4.5 Score=40.05 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=48.9
Q ss_pred CCCCcccccCCCCChhHHHHHH----cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~----aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
..+.+||||=||.|++...|.+ .|... -++++|+++...+..+..-. ..+..+...|...+.. .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~-~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~~--------~ 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRL-EVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELVA--------E 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHhccc---cCCCeEEEEecccccc--------c
Confidence 3567899999999998887754 46543 37899999998776654211 1121222333332221 1
Q ss_pred cCCccEEEecCCCCCc
Q 008149 517 LGSIDFVICQNSVPQI 532 (576)
Q Consensus 517 ~g~~DLVIGGpPCQ~F 532 (576)
-+.+|+|+...-..-+
T Consensus 127 ~~~fD~V~~~~~lhh~ 142 (232)
T PRK06202 127 GERFDVVTSNHFLHHL 142 (232)
T ss_pred CCCccEEEECCeeecC
Confidence 2579999986544333
No 159
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=80.75 E-value=3.8 Score=39.32 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=45.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh--ccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH--KLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~--~~g 518 (576)
+.+-+|||+=||.||++..+.+....-..++++|+++.. + ..+..++..|+.+... ++.+.. ..+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~~i~~~~~d~~~~~~--~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IENVDFIRGDFTDEEV--LNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CCCceEEEeeCCChhH--HHHHHHHhCCC
Confidence 346789999999999988776654322347899999853 1 1122244567765321 222211 124
Q ss_pred CccEEEecC
Q 008149 519 SIDFVICQN 527 (576)
Q Consensus 519 ~~DLVIGGp 527 (576)
.+|+|+...
T Consensus 98 ~~D~V~~~~ 106 (188)
T TIGR00438 98 KVDVVMSDA 106 (188)
T ss_pred CccEEEcCC
Confidence 699999643
No 160
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=80.59 E-value=4.5 Score=32.91 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=44.9
Q ss_pred cccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 008149 447 LSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 525 (576)
Q Consensus 447 LsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIG 525 (576)
||+=||.|-....|.+. +. .++++|+++...+..+...... +..+...|+.++.-. -+.||+|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~--------~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP--------DNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS---------TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc--------ccccccccc
Confidence 56778999999999888 54 4789999999888777665322 222667788777422 257999985
Q ss_pred cC
Q 008149 526 QN 527 (576)
Q Consensus 526 Gp 527 (576)
..
T Consensus 67 ~~ 68 (95)
T PF08241_consen 67 NS 68 (95)
T ss_dssp ES
T ss_pred cc
Confidence 44
No 161
>PRK06922 hypothetical protein; Provisional
Probab=79.30 E-value=3.4 Score=48.33 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=53.6
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 008149 436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
+.++.+ +.+|||+.||.|.+...+.+.. +-.-++++|+++......+...... .....+..+|+.++.. .+
T Consensus 413 i~d~~~-g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~dLp~-~f----- 483 (677)
T PRK06922 413 ILDYIK-GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAINLSS-SF----- 483 (677)
T ss_pred HhhhcC-CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchHhCcc-cc-----
Confidence 344443 6799999999999988776542 2235789999999877776543221 1111234567665431 11
Q ss_pred ccCCccEEEecCCCC
Q 008149 516 KLGSIDFVICQNSVP 530 (576)
Q Consensus 516 ~~g~~DLVIGGpPCQ 530 (576)
..+.||+|+..++-+
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 125799999876543
No 162
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=78.65 E-value=5.2 Score=39.81 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=68.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
..++.||+|=.|.|-++.++-+-|++-..+.++|++++-...+...+ ++..++.+|.-++... +.+. +-..|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~-l~e~--~gq~~ 118 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTT-LGEH--KGQFF 118 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHH-Hhhc--CCCee
Confidence 46788999999999999999999999999999999999877776543 4555777887766531 1111 12478
Q ss_pred cEEEecCCCCCcccc
Q 008149 521 DFVICQNSVPQIPNS 535 (576)
Q Consensus 521 DLVIGGpPCQ~FS~a 535 (576)
|.||.|-|--+|+..
T Consensus 119 D~viS~lPll~~P~~ 133 (194)
T COG3963 119 DSVISGLPLLNFPMH 133 (194)
T ss_pred eeEEeccccccCcHH
Confidence 999999999999853
No 163
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=78.65 E-value=3 Score=39.65 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=49.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhh-ccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH-KLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~-~~Ie~l~~-~~g~ 519 (576)
++.+||||=|+-||++..+.+.+-.-..|++||+.+.. ..++...+.+||.+... +.|.+... ..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999998888777334568999999872 12233355788876533 23333222 1258
Q ss_pred ccEEE--ecCCCCCcc
Q 008149 520 IDFVI--CQNSVPQIP 533 (576)
Q Consensus 520 ~DLVI--GGpPCQ~FS 533 (576)
+|+|+ |+++|++..
T Consensus 92 ~dlv~~D~~~~~~g~~ 107 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDR 107 (181)
T ss_dssp ESEEEE-------SSH
T ss_pred cceeccccccCCCCch
Confidence 99999 456777653
No 164
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=78.20 E-value=6.6 Score=41.86 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=50.0
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 524 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVI 524 (576)
+|+||=||.|=+.+.+.+..=. .-+.-+|+|..|.+.-+.++..++-.+..+...|+-+ .+ .+.||+||
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~----~v------~~kfd~Ii 229 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE----PV------EGKFDLII 229 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc----cc------cccccEEE
Confidence 8999999999877777665522 3467799999999999888764433332234444432 11 13699999
Q ss_pred ecCC
Q 008149 525 CQNS 528 (576)
Q Consensus 525 GGpP 528 (576)
.-||
T Consensus 230 sNPP 233 (300)
T COG2813 230 SNPP 233 (300)
T ss_pred eCCC
Confidence 8887
No 165
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=78.09 E-value=14 Score=34.77 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=49.4
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHH-HHH
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT-LQL 95 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~-~~L 95 (576)
-..+..|..-||+.+.|+.||+++. .+.. +++..++.- ....... .+. ..-.|+ .+|
T Consensus 79 ~~I~~~L~~kGi~~~~I~~~l~~~~-~d~~-e~a~~~~~k----~~~~~~~-------------~~~---~~k~Ki~~~L 136 (157)
T PRK00117 79 RRIRQELRQKGVDREIIEEALAELD-IDWE-ELARELARK----KFRRPLP-------------DDA---KEKAKLVRFL 136 (157)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-ccHH-HHHHHHHHH----HcCCCCC-------------CCH---HHHHHHHHHH
Confidence 3567888999999999999999987 3423 333333321 1110000 001 112244 489
Q ss_pred HhcCCCHHHHHHHHHHhCCC
Q 008149 96 LEMGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 96 ~~MGFseeEas~AI~r~G~d 115 (576)
..=||+-+.|..||+....+
T Consensus 137 ~rkGF~~~~I~~~l~~~~~~ 156 (157)
T PRK00117 137 ARRGFSMDVIQRVLRNALDD 156 (157)
T ss_pred HHCCCCHHHHHHHHHhhhcc
Confidence 99999999999999987655
No 166
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=78.05 E-value=5.1 Score=40.36 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=48.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+.+|||+=||.|.....+.+. ..+-..++++|+++...+..+......+.. ...++.+|+.++. +
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~----------~ 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA----------I 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC----------C
Confidence 456788999999999988777652 111124789999998887776654332211 1223456665543 1
Q ss_pred CCccEEEec
Q 008149 518 GSIDFVICQ 526 (576)
Q Consensus 518 g~~DLVIGG 526 (576)
+++|+|+..
T Consensus 124 ~~~D~vv~~ 132 (247)
T PRK15451 124 ENASMVVLN 132 (247)
T ss_pred CCCCEEehh
Confidence 356777744
No 167
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=77.76 E-value=4.3 Score=42.31 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+||++=.|.|+++..|-+.|-. |.|+|+|+..+.+++..... .....++.+|+-+++-..+. .++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~-------~~~~ 98 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLA-------QPYK 98 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhc-------CCCE
Confidence 578999999999999999998853 78999999999999875421 11123667899887754321 5678
Q ss_pred EEecCCCC
Q 008149 523 VICQNSVP 530 (576)
Q Consensus 523 VIGGpPCQ 530 (576)
|+|--|=+
T Consensus 99 vVaNlPY~ 106 (259)
T COG0030 99 VVANLPYN 106 (259)
T ss_pred EEEcCCCc
Confidence 88877754
No 168
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=77.23 E-value=5.4 Score=39.67 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=53.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+=||.|.+...+.+.. .+-..++++|+++......+........ ....++.+|+.++. ++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 121 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE----------IK 121 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----------CC
Confidence 456789999999999888776542 1112478999999888777765543211 11234567776654 23
Q ss_pred CccEEEecCCCCCc
Q 008149 519 SIDFVICQNSVPQI 532 (576)
Q Consensus 519 ~~DLVIGGpPCQ~F 532 (576)
++|+|+.....+-+
T Consensus 122 ~~d~v~~~~~l~~~ 135 (239)
T TIGR00740 122 NASMVILNFTLQFL 135 (239)
T ss_pred CCCEEeeecchhhC
Confidence 57888877765544
No 169
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=76.78 E-value=0.94 Score=45.57 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=14.0
Q ss_pred CCCCcccccCCCCChh
Q 008149 441 PGGLTMLSVFSGIGGA 456 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~ 456 (576)
.+.|.-||+||||||+
T Consensus 187 ~~~LaTLDIFAGCGGL 202 (202)
T cd04708 187 ENRLATLDIFAGCGGL 202 (202)
T ss_pred ccccceeeeecccCCC
Confidence 3578899999999996
No 170
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=76.76 E-value=4.8 Score=41.02 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=33.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 484 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k 484 (576)
.+-+||..=||-|==.+-|...|++ |++||+++.|+..+.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~ 82 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFF 82 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHH
Confidence 4578988888888777888999985 789999999987653
No 171
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.74 E-value=2.9 Score=45.67 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=32.1
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
......+++|||+++.|.+||+- -=+| -|-=||||++
T Consensus 157 e~~I~~i~eMGf~R~qV~~ALRA-afNN-PdRAVEYL~t 193 (378)
T TIGR00601 157 ETTIEEIMEMGYEREEVERALRA-AFNN-PDRAVEYLLT 193 (378)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH-HhCC-HHHHHHHHHh
Confidence 55788899999999999999998 4446 7799999996
No 172
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=76.05 E-value=4.6 Score=42.50 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=37.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 486 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~ 486 (576)
++++||.=||.|=++.-|-++|. .|.++|..+.+..+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh
Confidence 68899999999999999999996 478999999999999875
No 173
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=75.80 E-value=5.4 Score=39.44 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=35.8
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRW 486 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~ 486 (576)
+.+-+|||+=||.|-....|.+. +. ..+.++|+++.+.+..+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhh
Confidence 45678999999999999999876 32 2478999999999888764
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=75.76 E-value=5.3 Score=44.55 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCcccccCCCCChhHHHHHHcC----CceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhcc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLG----IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aG----i~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
...|+++=||-|-+....-+|| -. .-|+|||.|+.|..+++..-..++- ....++.+|+++++..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a-~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-------- 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGA-VKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-------- 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCE-SEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCC-eEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC--------
Confidence 4679999999999987666665 23 3589999999998887542111111 22336779999988642
Q ss_pred CCccEEE----ecCCCCCc
Q 008149 518 GSIDFVI----CQNSVPQI 532 (576)
Q Consensus 518 g~~DLVI----GGpPCQ~F 532 (576)
.+|||| |.+=|+-.
T Consensus 258 -kvDIIVSElLGsfg~nEl 275 (448)
T PF05185_consen 258 -KVDIIVSELLGSFGDNEL 275 (448)
T ss_dssp --EEEEEE---BTTBTTTS
T ss_pred -ceeEEEEeccCCcccccc
Confidence 689987 44444443
No 175
>PRK14135 recX recombination regulator RecX; Provisional
Probab=75.19 E-value=18 Score=36.88 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=51.5
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHH-HH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT-LQ 94 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~-~~ 94 (576)
.-..+..|...||+.+.|+.||+++-+++..+....++-.. ...... . +... .-.|+ ..
T Consensus 125 ~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k~--~~~~~~--~-------------~~~~---~k~Ki~~~ 184 (263)
T PRK14135 125 PRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEKL--LKKYQK--L-------------PFKA---LKQKIIQS 184 (263)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHHH--HHHhcC--C-------------CHHH---HHHHHHHH
Confidence 34678889999999999999999985544233221111110 000000 0 0000 11244 47
Q ss_pred HHhcCCCHHHHHHHHHHhCCCCChh
Q 008149 95 LLEMGFSENQVSLAIEKFGSKTPIS 119 (576)
Q Consensus 95 L~~MGFseeEas~AI~r~G~da~i~ 119 (576)
|..-||+.+.|..||+.+..+...+
T Consensus 185 L~rkGf~~~~I~~~l~~~~~e~d~~ 209 (263)
T PRK14135 185 LLTKGFSYEVIKAALEELDLEQDEE 209 (263)
T ss_pred HHhCCCCHHHHHHHHHHcccCCChH
Confidence 9999999999999999997654443
No 176
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=75.15 E-value=5.3 Score=40.05 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=51.6
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 511 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie 511 (576)
|+.+.++-+.+-+||||=||-|-+-.-|.. .+. .+..+|||+.......+ .|..++.+|+.+ .+.
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~-------rGv~Viq~Dld~----gL~ 69 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVA-------RGVSVIQGDLDE----GLA 69 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHH-------cCCCEEECCHHH----hHh
Confidence 445566677789999999999988766665 454 36889999997654432 355577788754 222
Q ss_pred HhhhccCCccEEEe
Q 008149 512 SLIHKLGSIDFVIC 525 (576)
Q Consensus 512 ~l~~~~g~~DLVIG 525 (576)
.+. -+.||.||-
T Consensus 70 ~f~--d~sFD~VIl 81 (193)
T PF07021_consen 70 DFP--DQSFDYVIL 81 (193)
T ss_pred hCC--CCCccEEeh
Confidence 211 157888873
No 177
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=74.74 E-value=8.8 Score=41.38 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=59.2
Q ss_pred CCcccccCCCCChhHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~-~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
+-+|||+.|+-||=+.-+-++.-+ -.+|+|+|+++.-.+.++.+-...+.....+...|=+.+.... ...+.||
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~-----~~~~~fD 231 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL-----PGGEKFD 231 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc-----cccCcCc
Confidence 588999999999988777766543 2347999999998888887665443322223333433332111 1112499
Q ss_pred EEEecCCCCCcccc
Q 008149 522 FVICQNSVPQIPNS 535 (576)
Q Consensus 522 LVIGGpPCQ~FS~a 535 (576)
-|.-=+||.+...-
T Consensus 232 ~iLlDaPCSg~G~i 245 (355)
T COG0144 232 RILLDAPCSGTGVI 245 (355)
T ss_pred EEEECCCCCCCccc
Confidence 99999999998765
No 178
>PRK03612 spermidine synthase; Provisional
Probab=74.08 E-value=7.4 Score=44.02 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=52.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH--hhhcC-----CCCCccccccccccChhhHHHh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW--WESSG-----QTGELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~--~~~tn-----~~g~l~~~~DI~~lt~~~Ie~l 513 (576)
+++-+||++-+|.|++...+.+.+ .++.+..||||+...+..+.+ +..-+ .+...++.+|.++.- .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l----~-- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL----R-- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH----H--
Confidence 456789999999999887776653 235689999999999988873 22111 111223445554321 1
Q ss_pred hhccCCccEEEecCCC
Q 008149 514 IHKLGSIDFVICQNSV 529 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPC 529 (576)
...+.+|+|+.-+|-
T Consensus 369 -~~~~~fDvIi~D~~~ 383 (521)
T PRK03612 369 -KLAEKFDVIIVDLPD 383 (521)
T ss_pred -hCCCCCCEEEEeCCC
Confidence 112579999998764
No 179
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=73.74 E-value=4.8 Score=36.27 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 482 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t 482 (576)
.+.+.+|||+=||.|.+...++..|++ ++++|+++.....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFE---VTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSE---EEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCE---EEEEECCHHHHhh
Confidence 356789999999999999999999983 6799999987644
No 180
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=73.21 E-value=3.7 Score=33.48 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCC
Q 008149 91 ITLQLLEMGFSENQVSLAIEKFGSKT 116 (576)
Q Consensus 91 k~~~L~~MGFseeEas~AI~r~G~da 116 (576)
-...+++|||+.+.|--|+.|.|.+.
T Consensus 12 lVd~F~~mGF~~dkVvevlrrlgik~ 37 (55)
T PF09288_consen 12 LVDQFENMGFERDKVVEVLRRLGIKS 37 (55)
T ss_dssp HHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 44689999999999999999999974
No 181
>PRK13699 putative methylase; Provisional
Probab=72.87 E-value=5.7 Score=40.16 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=34.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~ 487 (576)
.+=.|||-|+|.|..-++..++|-+ .+++|+++...++...-+
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~---~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRR---YIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCC---EEEEecCHHHHHHHHHHH
Confidence 4556999999999999999999975 578999998766554433
No 182
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=72.86 E-value=6 Score=39.21 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=32.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 126 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~ 126 (576)
+|-+..|+.+||++.||..|+.+..++.++++++-...
T Consensus 146 ~e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~aL 183 (186)
T PRK14600 146 DDALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRKAL 183 (186)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 45677999999999999999999988888988876543
No 183
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=72.65 E-value=6 Score=42.42 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=32.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~ 487 (576)
.+.+||||-||=||=-.=...+++. .++++||+..+..-.+.-|
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHH
Confidence 6799999999999966667788874 5999999998877655544
No 184
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=72.50 E-value=9.4 Score=40.49 Aligned_cols=36 Identities=31% Similarity=0.246 Sum_probs=30.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHH
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 480 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~ 480 (576)
+-+|||+=||.|.+...+...|.. .|+++|.++...
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l 158 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFL 158 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHH
Confidence 468999999999999998888864 489999998754
No 185
>PRK04266 fibrillarin; Provisional
Probab=71.92 E-value=11 Score=38.11 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=47.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|+++..+.+.-=. ..|+++|+++...+.+...-.. .+....+.+|+.+.. ....+ ...||
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~--~~~~l---~~~~D 143 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPE--RYAHV---VEKVD 143 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcc--hhhhc---cccCC
Confidence 4679999999999999888764101 2589999999765544332211 122234567876421 11111 13589
Q ss_pred EEEecC
Q 008149 522 FVICQN 527 (576)
Q Consensus 522 LVIGGp 527 (576)
+|+-..
T Consensus 144 ~i~~d~ 149 (226)
T PRK04266 144 VIYQDV 149 (226)
T ss_pred EEEECC
Confidence 988543
No 186
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=71.51 E-value=40 Score=31.66 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=50.9
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCc--HHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAP--VYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL 93 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~--~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~ 93 (576)
..++|..|...||+++.|+.||+.+=+.+- .....+..+........ + -.++.
T Consensus 28 ~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~------------------------g-~~~I~ 82 (157)
T PRK00117 28 RAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRARKGY------------------------G-PRRIR 82 (157)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCc------------------------h-HHHHH
Confidence 567899999999999999999988755432 22455555433211000 1 12444
Q ss_pred -HHHhcCCCHHHHHHHHHHhC
Q 008149 94 -QLLEMGFSENQVSLAIEKFG 113 (576)
Q Consensus 94 -~L~~MGFseeEas~AI~r~G 113 (576)
.|..-||+.+-+..||+.+.
T Consensus 83 ~~L~~kGi~~~~I~~~l~~~~ 103 (157)
T PRK00117 83 QELRQKGVDREIIEEALAELD 103 (157)
T ss_pred HHHHHcCCCHHHHHHHHHHcC
Confidence 79999999999999999987
No 187
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=71.29 E-value=4.8 Score=40.52 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=47.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh-cCC--CC---------CccccccccccChhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-SGQ--TG---------ELVQIEDIQALTTKK 509 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~-tn~--~g---------~l~~~~DI~~lt~~~ 509 (576)
.+-+||..-||-|=--+-|...|++ |+++|+++.|++........ ... .+ ..+.++|+-+++.+.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~---VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHD---VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEE---EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCe---EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 3567999889998777788899985 68999999998776322110 000 00 013456777776544
Q ss_pred HHHhhhccCCccEEEe
Q 008149 510 FESLIHKLGSIDFVIC 525 (576)
Q Consensus 510 Ie~l~~~~g~~DLVIG 525 (576)
+ |.||+|.=
T Consensus 114 ~-------g~fD~iyD 122 (218)
T PF05724_consen 114 V-------GKFDLIYD 122 (218)
T ss_dssp H-------HSEEEEEE
T ss_pred c-------CCceEEEE
Confidence 3 57899974
No 188
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=69.55 E-value=9.1 Score=39.09 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=46.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCce--eeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKL--KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~--k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
..+|||+=||.|.+...|....-.. ..++++|+++.+.+.-+.. .+...+..+|+.++.-. .+.|
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~--------~~sf 152 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFA--------DQSL 152 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCc--------CCce
Confidence 4679999999999988876542111 2478999999987766532 22223456777765421 1468
Q ss_pred cEEEe
Q 008149 521 DFVIC 525 (576)
Q Consensus 521 DLVIG 525 (576)
|+|+.
T Consensus 153 D~I~~ 157 (272)
T PRK11088 153 DAIIR 157 (272)
T ss_pred eEEEE
Confidence 99874
No 189
>PRK11524 putative methyltransferase; Provisional
Probab=68.47 E-value=6.6 Score=40.66 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 485 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~ 485 (576)
.|=.|||-|+|.|...++.+++|= ..+++|+++..+.+-+.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHH
Confidence 455699999999999999999994 46899999987766543
No 190
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=67.78 E-value=4.6 Score=40.94 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+||||-||.|=.+++-.++|-. -|++.||++.+....+.|= ..+|.. |.-+-.+ .+..-+.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa---~angv~-----i~~~~~d----~~g~~~~~D 144 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNA---AANGVS-----ILFTHAD----LIGSPPAFD 144 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcch---hhccce-----eEEeecc----ccCCCccee
Confidence 4789999999999999999999985 4899999999988776532 223322 1111111 112336789
Q ss_pred EEEecCCCCCcccc
Q 008149 522 FVICQNSVPQIPNS 535 (576)
Q Consensus 522 LVIGGpPCQ~FS~a 535 (576)
||+.|-=|-+-+.+
T Consensus 145 l~LagDlfy~~~~a 158 (218)
T COG3897 145 LLLAGDLFYNHTEA 158 (218)
T ss_pred EEEeeceecCchHH
Confidence 99998888776643
No 191
>PLN02366 spermidine synthase
Probab=67.46 E-value=13 Score=39.51 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn----~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+++-+||.+=+|.||+...+.+.. .+.-|..||||+...+..+.|+...+ .+...++.+|-.+.- ++. .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l----~~~--~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL----KNA--P 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH----hhc--c
Confidence 456789999999999887776652 34568889999998888888875421 112223445543221 110 0
Q ss_pred cCCccEEEecC
Q 008149 517 LGSIDFVICQN 527 (576)
Q Consensus 517 ~g~~DLVIGGp 527 (576)
-+.+|+||.-.
T Consensus 163 ~~~yDvIi~D~ 173 (308)
T PLN02366 163 EGTYDAIIVDS 173 (308)
T ss_pred CCCCCEEEEcC
Confidence 24699999743
No 192
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=65.63 E-value=9.1 Score=38.24 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=29.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHh---CCCCChhhhhHhH
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKF---GSKTPISELADKI 125 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~---G~da~i~eLvD~I 125 (576)
+|-...|+++||++.||..||.++ ..+.++++++-..
T Consensus 153 ~ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~a 192 (197)
T PRK14603 153 EDAVLALLALGFREAQVRSVVAELLAQNPEASAQTLIRKA 192 (197)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 456678999999999999999998 3355777766543
No 193
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=65.33 E-value=5.3 Score=42.40 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=59.9
Q ss_pred HHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHHHHHhcCCC
Q 008149 22 SLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFS 101 (576)
Q Consensus 22 ~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~~L~~MGFs 101 (576)
++.+--|..++|.+|+-..|... ..+-|..||+|=.+++..+. .+.|..-|.+|||.
T Consensus 35 y~~g~d~d~~~I~~AlsavGGpq-T~~ALsvLlafV~~g~~~~~----------------------~et~~kiL~dmgFk 91 (357)
T PF03216_consen 35 YFFGADTDGKMIKRALSAVGGPQ-TNQALSVLLAFVTQGTNQDD----------------------TETKCKILTDMGFK 91 (357)
T ss_pred EEecCccchHHHHHHHHHcCCch-HHHHHHHHHHHHHcCCChhh----------------------hhhHHHHHHHhCce
Confidence 34466688999999999999988 77888999988666443210 23466788999999
Q ss_pred HHHHHHHHH-HhCCCCChhhhhHhH
Q 008149 102 ENQVSLAIE-KFGSKTPISELADKI 125 (576)
Q Consensus 102 eeEas~AI~-r~G~da~i~eLvD~I 125 (576)
.+++..|=. .-|.+.|+.+|+..|
T Consensus 92 v~~~p~a~~~~agi~~P~~~lA~tv 116 (357)
T PF03216_consen 92 VTQVPRATPIEAGIMMPMRKLAETV 116 (357)
T ss_pred eEecccCCCcccchhchHHHHHHHh
Confidence 999986632 346677888887655
No 194
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=65.25 E-value=8.3 Score=38.25 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=30.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCC-CCChhhhhHhH
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGS-KTPISELADKI 125 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~-da~i~eLvD~I 125 (576)
++-+..|+++||++.||..||.+... +.++++|+-..
T Consensus 144 ~e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lik~A 181 (188)
T PRK14606 144 HESLEALVSLGYPEKQAREAVKHVYREGMKTSELIKEA 181 (188)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 45677999999999999999999954 66787776543
No 195
>PLN02476 O-methyltransferase
Probab=64.68 E-value=14 Score=38.86 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=58.5
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccCh
Q 008149 430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTT 507 (576)
Q Consensus 430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~ 507 (576)
+.+|+.|-.+. +.-+||++.+|+|..++.+..+ +=. -.++++|+++...++-+.+|...+.... .++.+|..+
T Consensus 107 g~lL~~L~~~~-~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--- 181 (278)
T PLN02476 107 AQLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--- 181 (278)
T ss_pred HHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH---
Confidence 44455554444 3568999999999998887653 211 1378999999999999999987654321 133455433
Q ss_pred hhHHHhhh--ccCCccEEEecCC
Q 008149 508 KKFESLIH--KLGSIDFVICQNS 528 (576)
Q Consensus 508 ~~Ie~l~~--~~g~~DLVIGGpP 528 (576)
.++++.. ..+.||+|+=..+
T Consensus 182 -~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 182 -SLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred -HHHHHHhcccCCCCCEEEECCC
Confidence 2223221 1257898876554
No 196
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=64.62 E-value=4.6 Score=42.09 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=61.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH-HhhhcCCCC-CccccccccccChhhHHHhhhcc--
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR-WWESSGQTG-ELVQIEDIQALTTKKFESLIHKL-- 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~-~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~-- 517 (576)
.+-+|||-..|-|=..+..-+.|... |..+|.|+.....-+. -|...-+.. .-++.+|+-+ ++..+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~--VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--------~V~~~~D 203 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIH--VITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--------VVKDFDD 203 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcE--EEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--------HHhcCCc
Confidence 57889999999998888888888733 7889999875322111 111110111 1234455433 23333
Q ss_pred CCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHH
Q 008149 518 GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 570 (576)
Q Consensus 518 g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~ 570 (576)
..||.||--|| -||.||. |. --.+|.|+.|||+.
T Consensus 204 ~sfDaIiHDPP--RfS~Age---------------LY--seefY~El~RiLkr 237 (287)
T COG2521 204 ESFDAIIHDPP--RFSLAGE---------------LY--SEEFYRELYRILKR 237 (287)
T ss_pred cccceEeeCCC--ccchhhh---------------Hh--HHHHHHHHHHHcCc
Confidence 36999999999 5776542 11 12477888888763
No 197
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=64.23 E-value=18 Score=35.27 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=31.5
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
+|||+=||.|++...+.+..-.. .+.++|+++......+....
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~-~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL-QLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHH
Confidence 58999999999887776543122 36789999988776666543
No 198
>PRK14135 recX recombination regulator RecX; Provisional
Probab=64.09 E-value=29 Score=35.33 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=49.0
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh--hhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHH-HH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA--QISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT-LQ 94 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~--q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~-~~ 94 (576)
..+.+|..-||+.+.|..||+++..+...+.-.+.|... ......+. . .. ...-.|+ .+
T Consensus 180 Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~~e~e~l~~~~~k~~~k~~~--~-------------~~---~k~k~K~~~~ 241 (263)
T PRK14135 180 KIIQSLLTKGFSYEVIKAALEELDLEQDEEEEQELLQKELEKAYRKYSK--Y-------------DG---YELKQKLKQA 241 (263)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHHhc--C-------------CH---HHHHHHHHHH
Confidence 356788899999999999999986432122333333211 01111110 0 00 0112344 47
Q ss_pred HHhcCCCHHHHHHHHHHhCCC
Q 008149 95 LLEMGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 95 L~~MGFseeEas~AI~r~G~d 115 (576)
|..=||+-+.+..||..+..|
T Consensus 242 L~rrGF~~~~I~~~l~~~~~~ 262 (263)
T PRK14135 242 LYRKGFSYDDIDSFLREYGIE 262 (263)
T ss_pred HHHCCCCHHHHHHHHHHhccC
Confidence 999999999999999988654
No 199
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=64.03 E-value=14 Score=33.14 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=37.9
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 490 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t 490 (576)
+++|+-||.|-.++.+.+.|-. ..++++|.++.+...++.++...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~n 45 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLN 45 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHHc
Confidence 5899999999999999988754 25899999999999888877543
No 200
>PTZ00146 fibrillarin; Provisional
Probab=63.52 E-value=18 Score=38.51 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+..+.+||||-||.|+++.-+... |-. -.|+|||+++...+-+...-.. .+....+..|++.- ..+.. ..+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~-G~VyAVD~s~r~~~dLl~~ak~--r~NI~~I~~Da~~p--~~y~~---~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPE-GVVYAVEFSHRSGRDLTNMAKK--RPNIVPIIEDARYP--QKYRM---LVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCCEEEECCccCh--hhhhc---ccC
Confidence 345689999999999998777654 321 2589999997543222211111 12223456777642 11111 124
Q ss_pred CccEEEecC
Q 008149 519 SIDFVICQN 527 (576)
Q Consensus 519 ~~DLVIGGp 527 (576)
.||+|+.-.
T Consensus 202 ~vDvV~~Dv 210 (293)
T PTZ00146 202 MVDVIFADV 210 (293)
T ss_pred CCCEEEEeC
Confidence 689997766
No 201
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=63.24 E-value=11 Score=37.89 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=30.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHh---CCCCChhhhhHhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKF---GSKTPISELADKIF 126 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~---G~da~i~eLvD~I~ 126 (576)
+|-+..|+.+||++.||..|+.++ .++.++++|+-...
T Consensus 156 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~AL 196 (203)
T PRK14602 156 RDALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALRAAL 196 (203)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 456778999999999999999999 34567777765443
No 202
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=61.81 E-value=16 Score=38.73 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=49.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-++||.=+|.||.+..+-+..=+--.|+++|+|+.+....+..... .....++.+|..++.. .+.+ ..+.+|.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~-~l~~---~~~~vDg 93 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE-VLAE---GLGKVDG 93 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH-HHHc---CCCccCE
Confidence 45799999999999999887641112489999999998877654321 1112245566666531 1111 1236888
Q ss_pred EEecC
Q 008149 523 VICQN 527 (576)
Q Consensus 523 VIGGp 527 (576)
|+.=.
T Consensus 94 Il~DL 98 (296)
T PRK00050 94 ILLDL 98 (296)
T ss_pred EEECC
Confidence 87543
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=61.53 E-value=22 Score=37.94 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=59.6
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhh
Q 008149 437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~~Ie~l~~ 515 (576)
|.-.+.+-.||+.=-|.|-+++.|-.+|- .|+|||+|+.-..-+.+-...+...+-+ ++.+|+-+.+
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------- 120 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------- 120 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---------
Confidence 33333456799999999999999999994 5899999999887777655444322222 4567776554
Q ss_pred ccCCccEEEecCCCCCcc
Q 008149 516 KLGSIDFVICQNSVPQIP 533 (576)
Q Consensus 516 ~~g~~DLVIGGpPCQ~FS 533 (576)
+.-+|++|.--|-|=-|
T Consensus 121 -~P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 121 -LPRFDGCVSNLPYQISS 137 (315)
T ss_pred -CcccceeeccCCccccC
Confidence 24689999887877544
No 204
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=60.63 E-value=28 Score=33.47 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=43.8
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChh-hHHHhhhccC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTK-KFESLIHKLG 518 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~-~Ie~l~~~~g 518 (576)
.+.+||+|=||+|=..+.+..+ |- ..|+.-|+++ +...++.+-+.++. .... -.+..++=. .+.......+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~---v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNE-VLELLRRNIELNGSLLDGR---VSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred CCceEEEECCccchhHHHHHhccCC--ceEEEeccch-hhHHHHHHHHhcccccccc---ccCcEEEecCcccccccccc
Confidence 5689999999999888888887 43 4578899999 77788776543320 1111 123333211 1111111235
Q ss_pred CccEEEecCCC
Q 008149 519 SIDFVICQNSV 529 (576)
Q Consensus 519 ~~DLVIGGpPC 529 (576)
.||+|+|.==.
T Consensus 119 ~~D~IlasDv~ 129 (173)
T PF10294_consen 119 SFDVILASDVL 129 (173)
T ss_dssp SBSEEEEES--
T ss_pred cCCEEEEeccc
Confidence 79999987543
No 205
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=60.10 E-value=30 Score=38.05 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKR 485 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~ 485 (576)
..+.+|||+=||.|++...+... |. .|+++|+++.+...-+.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALE 307 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHH
Confidence 35678999999999988777653 54 37899999988766554
No 206
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=60.03 E-value=32 Score=36.75 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=30.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 481 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~ 481 (576)
+-+|||+=||.|.+...+...|.. .|+++|.++....
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~ 158 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLC 158 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHH
Confidence 468999999999999998888863 5889999986543
No 207
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=59.83 E-value=18 Score=37.80 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC------CCChhhhhHhHhh
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGS------KTPISELADKIFS 127 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~------da~i~eLvD~I~A 127 (576)
.++..|.++||+++|+..++.+|=. +. +..-+||...
T Consensus 245 ~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~ 287 (345)
T PF02536_consen 245 PKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVK 287 (345)
T ss_dssp HHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHH
Confidence 5667899999999999999999854 32 5556666654
No 208
>PRK04457 spermidine synthase; Provisional
Probab=59.63 E-value=14 Score=38.10 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=48.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+||+|=+|.|.+...+.+.- +-..+.+||+|+...+..+.|+..... +...++.+|..+.- .. ..+.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l----~~---~~~~y 137 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI----AV---HRHST 137 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH----Hh---CCCCC
Confidence 34579999888888777675542 223478999999999998888753221 22234556665431 11 12478
Q ss_pred cEEEe
Q 008149 521 DFVIC 525 (576)
Q Consensus 521 DLVIG 525 (576)
|+|+-
T Consensus 138 D~I~~ 142 (262)
T PRK04457 138 DVILV 142 (262)
T ss_pred CEEEE
Confidence 99985
No 209
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=59.30 E-value=21 Score=38.61 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=45.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+||||=||.|.+.+.+.+. +- ..+.++|+++...+..+...... ...++.+|+.++.- .-+.|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~---~i~~i~gD~e~lp~--------~~~sF 179 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLK---ECKIIEGDAEDLPF--------PTDYA 179 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhcc---CCeEEeccHHhCCC--------CCCce
Confidence 4679999999999988777543 21 34788999988766665543211 11234566654431 11468
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+...
T Consensus 180 DvVIs~~ 186 (340)
T PLN02490 180 DRYVSAG 186 (340)
T ss_pred eEEEEcC
Confidence 9888643
No 210
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=59.29 E-value=12 Score=37.05 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=28.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADK 124 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~ 124 (576)
++-+..|+++||++.||..|+.+.. +.++++++-.
T Consensus 143 ~ea~~AL~~LGy~~~ea~~a~~~~~-~~~~eelir~ 177 (183)
T PRK14601 143 SEALAALLTLGFKQEKIIKVLASCQ-STGTSELIKE 177 (183)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhcc-cCCHHHHHHH
Confidence 4567899999999999999999994 5677777543
No 211
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=58.97 E-value=25 Score=36.76 Aligned_cols=87 Identities=10% Similarity=-0.052 Sum_probs=53.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc--cccccccccChhhHHHhhhcc-
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL--VQIEDIQALTTKKFESLIHKL- 517 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l--~~~~DI~~lt~~~Ie~l~~~~- 517 (576)
+.+.+||||=||.|-....|-+++.+...++++|+++......+..-... .++.. .+++|+.+.. . +....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-~p~~~v~~i~gD~~~~~--~---~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPL--A---LPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-CCCceEEEEEEcccchh--h---hhcccc
Confidence 34578999999999999988877431134789999998755444322211 22221 2467776431 1 11111
Q ss_pred -CCccEEEecCCCCCcc
Q 008149 518 -GSIDFVICQNSVPQIP 533 (576)
Q Consensus 518 -g~~DLVIGGpPCQ~FS 533 (576)
+...+++-|+++..|+
T Consensus 136 ~~~~~~~~~gs~~~~~~ 152 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFT 152 (301)
T ss_pred cCCeEEEEecccccCCC
Confidence 2456777888888776
No 212
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=58.74 E-value=13 Score=36.89 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCC--CCChhhhhHhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGS--KTPISELADKIF 126 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~--da~i~eLvD~I~ 126 (576)
.+-+..|..+||+..||..|+.+++. +.++++++-...
T Consensus 149 ~e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~aL 188 (194)
T PRK14605 149 SDILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKLAL 188 (194)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 45667899999999999999999984 667888765443
No 213
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=56.69 E-value=18 Score=35.98 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=30.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCC--CCChhhhhHhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGS--KTPISELADKIF 126 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~--da~i~eLvD~I~ 126 (576)
++-...|+.+||+..||..||.+.-. +.++++++....
T Consensus 148 ~e~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~aL 187 (191)
T TIGR00084 148 DELFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEEAL 187 (191)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 45667899999999999999999853 568888876544
No 214
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=56.36 E-value=24 Score=38.43 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=32.9
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRW 486 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~ 486 (576)
.+.+|||+=||.|++..-+.+ .|.+ |.++|+++......+..
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~---V~giDlS~~~l~~A~~~ 209 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVS---VVGVTISAEQQKLAQER 209 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHH
Confidence 467899999999999876665 4653 78899999987766543
No 215
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=55.43 E-value=28 Score=36.28 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALT 506 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt 506 (576)
..|.+|||+=||-||+..-+.+. |.+ |.++.+++.-..-.+..-...+... ..+...|.++++
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 35889999999999999877766 874 6788999887666555443332221 123445554443
No 216
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=55.16 E-value=24 Score=38.98 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=52.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+..+||+=||.|.+.+.+.+.. +-..++++|+++.........-...+-....++.+|+..+.. .+ .-+.+|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC-----CCCcee
Confidence 35679999999999998888764 224689999998776555443322221222244566654321 11 126799
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
.|.--+|+.
T Consensus 195 ~I~lnFPdP 203 (390)
T PRK14121 195 KIFVHFPVP 203 (390)
T ss_pred EEEEeCCCC
Confidence 999878764
No 217
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=54.05 E-value=27 Score=35.34 Aligned_cols=71 Identities=24% Similarity=0.414 Sum_probs=50.6
Q ss_pred CCCCCcccccCCCCChhHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 440 FPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~sl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
|..+.+|+||=|--||-+- +.+.+|-..+ |++||+.|.. ..++...+.+||+.-+. ++.+....+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~-----------~~~~V~~iq~d~~~~~~--~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMK-----------PIPGVIFLQGDITDEDT--LEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECcccc-----------cCCCceEEeeeccCccH--HHHHHHHcC
Confidence 4568999999999999985 6677775443 7899999985 24566677899986543 333333333
Q ss_pred --CccEEE
Q 008149 519 --SIDFVI 524 (576)
Q Consensus 519 --~~DLVI 524 (576)
.+|+|+
T Consensus 109 ~~~~DvV~ 116 (205)
T COG0293 109 GAPVDVVL 116 (205)
T ss_pred CCCcceEE
Confidence 369998
No 218
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=53.63 E-value=20 Score=36.33 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=49.4
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCCcc
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
-+||||=||-|-+-..|++-||+-+ +..||+++.|...-+ +-...+... .-+...||.+= +. ..+++|
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~--~~------~~~qfd 138 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDP--DF------LSGQFD 138 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCC--cc------ccccee
Confidence 4899999999999999999999754 789999999886543 222222222 12455677542 11 126788
Q ss_pred EEEec
Q 008149 522 FVICQ 526 (576)
Q Consensus 522 LVIGG 526 (576)
||.-=
T Consensus 139 lvlDK 143 (227)
T KOG1271|consen 139 LVLDK 143 (227)
T ss_pred EEeec
Confidence 88643
No 219
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=52.13 E-value=30 Score=38.12 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCcccccCCCCC--hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 443 GLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 443 ~l~VLsLFSGiG--G~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
..+|+|-|||.| |..++.+- |.. .|+.+||++.|.++.+.|-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~--~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVV--KVVLNDISPKAVELIKENVR 97 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-Ccc--EEEEccCCHHHHHHHHHHHH
Confidence 588999999888 88887654 332 58899999999999998754
No 220
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=51.51 E-value=6.3 Score=44.76 Aligned_cols=59 Identities=32% Similarity=0.389 Sum_probs=40.9
Q ss_pred hhhhccccchh--hhccccccC--CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 008149 421 RHCFQTDTLGY--HLSVLKSMF--PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 482 (576)
Q Consensus 421 g~sf~vdtv~~--~lsvLK~~f--~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t 482 (576)
+.-||++|.+. +.++..++- +.+-.++|++||.|-+++++.+ | ++-|+.||+++.+..-
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~--~~~ViGvEi~~~aV~d 420 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-G--VKRVIGVEISPDAVED 420 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-c--ccceeeeecChhhcch
Confidence 34567776443 234444332 3456699999999999999876 3 3558999999998643
No 221
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=49.97 E-value=22 Score=35.52 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=29.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCC--CCChhhhhHhH
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGS--KTPISELADKI 125 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~--da~i~eLvD~I 125 (576)
++-...|+.+||+..||..||.++-. +.++++++-..
T Consensus 150 ~e~~~aL~~LGy~~~ea~~ai~~i~~~~~~~~~~~ir~a 188 (195)
T PRK14604 150 RELSEILISLGYSAAEAAAAIAALPSDAPPDLEERLRLA 188 (195)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 45667899999999999999999843 45777766543
No 222
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=49.93 E-value=51 Score=29.66 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.4
Q ss_pred HHH-HHHhcCCCHHHHHHHHHH
Q 008149 91 ITL-QLLEMGFSENQVSLAIEK 111 (576)
Q Consensus 91 k~~-~L~~MGFseeEas~AI~r 111 (576)
|+. +|+.-||+.+.|..||.+
T Consensus 97 K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 97 KLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHHHCCCCHHHHHHHHhh
Confidence 444 799999999999999987
No 223
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.30 E-value=46 Score=34.57 Aligned_cols=74 Identities=24% Similarity=0.305 Sum_probs=47.4
Q ss_pred CcccccCCCCChhHHHHHH--cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc--cCC
Q 008149 444 LTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LGS 519 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~--aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~--~g~ 519 (576)
.-.|-.|+|.+-+..|+.- -| .|+++|||+.+-++....+... |+...+.=|..-..+.|.+++.+ .+.
T Consensus 77 ~lelGvfTGySaL~~Alalp~dG----rv~a~eid~~~~~~~~~~~k~a---gv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 77 TLELGVFTGYSALAVALALPEDG----RVVAIEIDADAYEIGLELVKLA---GVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred EEEEecccCHHHHHHHHhcCCCc----eEEEEecChHHHHHhHHHHHhc---cccceeeeeecchhhhHHHHHhcCCCCc
Confidence 3345669999998888763 44 3789999999988887777644 33222222344444566666643 456
Q ss_pred ccEEE
Q 008149 520 IDFVI 524 (576)
Q Consensus 520 ~DLVI 524 (576)
||+++
T Consensus 150 fDfaF 154 (237)
T KOG1663|consen 150 FDFAF 154 (237)
T ss_pred eeEEE
Confidence 66654
No 224
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=47.05 E-value=22 Score=35.92 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=28.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCC---CCChhhhhHhH
Q 008149 92 TLQLLEMGFSENQVSLAIEKFGS---KTPISELADKI 125 (576)
Q Consensus 92 ~~~L~~MGFseeEas~AI~r~G~---da~i~eLvD~I 125 (576)
...|+.|||++.|+..|+...-. +.+++++.-..
T Consensus 160 v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~Ik~a 196 (201)
T COG0632 160 VEALVALGYKEKEIKKAVKKVLKENPDADVEELIKEA 196 (201)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 67999999999999999998875 67777776544
No 225
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=46.57 E-value=54 Score=36.16 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=80.3
Q ss_pred hHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCce-e--eE
Q 008149 394 HIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKL-K--GV 470 (576)
Q Consensus 394 E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~-k--~v 470 (576)
-++++.+|=..-|-++++.+.+-..+| ++++= +. ..+-+|||+.|--||=++.|.++...- . .|
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSml------PvL~L------~v-~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~v 186 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSML------PVLAL------GV-KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYV 186 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhcc------chhhc------cc-CCCCeeeeeccCCCccHHHHHHHHhcCCCCCee
Confidence 567777887888888888777766332 22110 11 236789999999999999998887631 1 48
Q ss_pred EEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh-hccCCccEEEecCCCCCccc
Q 008149 471 ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI-HKLGSIDFVICQNSVPQIPN 534 (576)
Q Consensus 471 vavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~-~~~g~~DLVIGGpPCQ~FS~ 534 (576)
++.|+|..=.+.+.+--...+.+...+...|++......+...- ..+-.||=|..--||.+=+.
T Consensus 187 vaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt 251 (375)
T KOG2198|consen 187 VANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGT 251 (375)
T ss_pred EecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcc
Confidence 89999988666665422222333333445565555443221000 01236899999999998753
No 226
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=46.14 E-value=30 Score=36.12 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=42.2
Q ss_pred CCCChh----HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh----hccCCccE
Q 008149 451 SGIGGA----EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSIDF 522 (576)
Q Consensus 451 SGiGG~----slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~----~~~g~~DL 522 (576)
.|+||. +.+|-..|+.+-++...+-++.+..-|++ ........++..||++ ..+++... ..+|.+|+
T Consensus 12 ggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~a---i~p~~~v~F~~~DVt~--~~~~~~~f~ki~~~fg~iDI 86 (261)
T KOG4169|consen 12 GGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQA---INPSVSVIFIKCDVTN--RGDLEAAFDKILATFGTIDI 86 (261)
T ss_pred cCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhc---cCCCceEEEEEecccc--HHHHHHHHHHHHHHhCceEE
Confidence 445554 56677889864333333333444444433 3334455677889987 44555444 34799999
Q ss_pred EEecC
Q 008149 523 VICQN 527 (576)
Q Consensus 523 VIGGp 527 (576)
+|-|.
T Consensus 87 lINgA 91 (261)
T KOG4169|consen 87 LINGA 91 (261)
T ss_pred EEccc
Confidence 99765
No 227
>PRK14136 recX recombination regulator RecX; Provisional
Probab=45.95 E-value=70 Score=34.47 Aligned_cols=76 Identities=11% Similarity=0.012 Sum_probs=47.0
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHHHHHh
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLE 97 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~~L~~ 97 (576)
..+..|..-|.+.+.|+.||+++. ++..+ ++..|+. .+...... .. .+..+.+.+|..
T Consensus 230 rIrqELrQKGId~eLIEqALeeie-EDE~E-~A~~L~e----KK~~~~~~-------------d~---kek~K~iRfL~r 287 (309)
T PRK14136 230 RIVSELKRHAVGDALVESVGAQLR-ETEFE-RAQAVWR----KKFGALPQ-------------TP---AERAKQARFLAA 287 (309)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcc-HhHHH-HHHHHHH----HHhcccCc-------------CH---HHHHHHHHHHHH
Confidence 356778888999999999999883 33233 2223331 11111000 00 112233458999
Q ss_pred cCCCHHHHHHHHHHhCCC
Q 008149 98 MGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 98 MGFseeEas~AI~r~G~d 115 (576)
=||+-+.|..+|..+..+
T Consensus 288 RGFS~D~I~~vLk~~~de 305 (309)
T PRK14136 288 RGFSSATIVKLLKVGDDE 305 (309)
T ss_pred CCCCHHHHHHHHHhchhc
Confidence 999999999999887654
No 228
>PLN03075 nicotianamine synthase; Provisional
Probab=45.68 E-value=1.2e+02 Score=32.40 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=46.9
Q ss_pred CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhh-cCC-CCCccccccccccChhhHHHhhhccC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWES-SGQ-TGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~-tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
.+-+|+++=||-||++.-+-.++ ++--.+..+|+|+.+...-+++... ... ....+..+|+.++.. ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~--------~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE--------SLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc--------ccC
Confidence 34679999888887765433322 2222477999999998877776632 211 112345567665432 125
Q ss_pred CccEEEec
Q 008149 519 SIDFVICQ 526 (576)
Q Consensus 519 ~~DLVIGG 526 (576)
+||+|+-=
T Consensus 195 ~FDlVF~~ 202 (296)
T PLN03075 195 EYDVVFLA 202 (296)
T ss_pred CcCEEEEe
Confidence 79999844
No 229
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=44.58 E-value=18 Score=40.58 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=39.8
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149 437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~ 487 (576)
-.+|.-|-.|-|+|||+|=+++-+-.-| ..|+|.|.++...+.++.+-
T Consensus 244 sg~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni 291 (495)
T KOG2078|consen 244 SGLFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANI 291 (495)
T ss_pred hhccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhc
Confidence 3467778889999999999988776666 46899999999999988754
No 230
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=43.98 E-value=26 Score=38.18 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=31.7
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHH
Q 008149 439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 480 (576)
Q Consensus 439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~ 480 (576)
+|. +-+|||.=||.|=+++=-.+||- +.|+|||.+..+-
T Consensus 58 lf~-dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~ 96 (346)
T KOG1499|consen 58 LFK-DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIAD 96 (346)
T ss_pred hcC-CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHH
Confidence 454 45699999999999998889996 5689999887763
No 231
>PRK14137 recX recombination regulator RecX; Provisional
Probab=43.35 E-value=1e+02 Score=30.91 Aligned_cols=77 Identities=13% Similarity=0.080 Sum_probs=47.6
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHHHHHh
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLE 97 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~~L~~ 97 (576)
-.+..|..-|.+.+.|+.||.+...++..+.+.+.+-. +...... .. . ...+.+.+|..
T Consensus 106 rI~~eL~qKGI~~~lI~~al~~~d~ede~e~a~~l~~K-----K~~~~~~-------------~~-~--~k~K~~~~L~r 164 (195)
T PRK14137 106 RVRQTLRRRGVEETLIEETLAARDPQEEQQEARNLLER-----RWSSFAR-------------KR-D--PRASAYAFLAR 164 (195)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcCchhHHHHHHHHHHH-----hccccCc-------------ch-h--HHHHHHHHHHH
Confidence 35677888999999999999987444423333333332 1111000 00 0 01123348999
Q ss_pred cCCCHHHHHHHHHHhCCC
Q 008149 98 MGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 98 MGFseeEas~AI~r~G~d 115 (576)
=||+-+.|..||..+-..
T Consensus 165 RGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 165 RGFSGAVIWPAIREVAAL 182 (195)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987554
No 232
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.53 E-value=21 Score=35.85 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~d 115 (576)
+|+..|.+|||+++|+-.|+.+-+-+
T Consensus 164 ~~v~~l~~mGf~~~~~i~~L~~~~w~ 189 (200)
T KOG0418|consen 164 KKVDSLIEMGFSELEAILVLSGSDWN 189 (200)
T ss_pred HHHHHHHHhcccHHHHHHHhhccccc
Confidence 57889999999999999888766654
No 233
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=42.25 E-value=65 Score=34.23 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=40.1
Q ss_pred CCCCcccccCCCCChhHHH-HHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccCh
Q 008149 441 PGGLTMLSVFSGIGGAEVT-LHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT 507 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slG-L~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~ 507 (576)
..|++|||+=||-||+.+= .++-|.+ |+++.+|+.-..-.+.-....+-. ...++..|.++++.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 4689999999999998753 4444653 789999988766655432222211 12234556555543
No 234
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=41.61 E-value=44 Score=33.89 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=42.1
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 523 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV 523 (576)
-++|++=||+|-++..|.... .-+.++|+++.|...-+.--. ..+..-++..||....+ -+.||||
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~P---------~~~FDLI 110 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFWP---------EGRFDLI 110 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT------------SS-EEEE
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCCC---------CCCeeEE
Confidence 358999999999999887654 568899999999877765332 22333345667655432 2578888
Q ss_pred Eec
Q 008149 524 ICQ 526 (576)
Q Consensus 524 IGG 526 (576)
+-.
T Consensus 111 V~S 113 (201)
T PF05401_consen 111 VLS 113 (201)
T ss_dssp EEE
T ss_pred EEe
Confidence 854
No 235
>PRK14134 recX recombination regulator RecX; Provisional
Probab=41.56 E-value=1.1e+02 Score=32.24 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=47.7
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHH-HHHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT-LQLL 96 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~-~~L~ 96 (576)
..+..|..-|.+.+.|+.||++..+++.. +++..|+. -....... .+. +....-.|+ .+|.
T Consensus 129 ~I~~eL~qKGI~~~iIe~al~~~~~e~e~-e~a~~l~~----Kk~~~~~~---------~~~----~~~k~k~Kl~~~L~ 190 (283)
T PRK14134 129 KIKYTLLNKGIKENIIIEKINNIDEEKEK-KVAYKLAE----KKYKILIL---------SEK----NKFKIYKKLGPYLI 190 (283)
T ss_pred HHHHHHHHCCCCHHHHHHHHHhCChhhHH-HHHHHHHH----Hhhccccc---------ccc----cHHHHHHHHHHHHH
Confidence 45678889999999999999987655422 33323321 01110000 000 001112345 4899
Q ss_pred hcCCCHHHHHHHHHHhCC
Q 008149 97 EMGFSENQVSLAIEKFGS 114 (576)
Q Consensus 97 ~MGFseeEas~AI~r~G~ 114 (576)
.=||+-+.|..||.++-.
T Consensus 191 rrGFs~~~I~~vl~~~~~ 208 (283)
T PRK14134 191 SRGYSSNIAEWILNELIK 208 (283)
T ss_pred HCCCCHHHHHHHHHHHHh
Confidence 999999999999998853
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=40.96 E-value=50 Score=36.18 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 481 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~ 481 (576)
+..+.++|||=|+-||++.-|.+.|.. |+|||..+.+-.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~l~~~ 247 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGPMAQS 247 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCE---EEEEechhcCHh
Confidence 456889999999999999999999983 789998887643
No 237
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=40.90 E-value=45 Score=33.17 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=31.2
Q ss_pred chhhhhHHHhcCCCChHHHHHHHHHhCC-CCcHHHHHHHHH
Q 008149 15 LHIEKRASLLMMNFSVNEVDFALDKLGK-DAPVYELVDFIT 54 (576)
Q Consensus 15 ~~s~~r~~li~MGFs~e~V~kAIqe~Ge-~~~~~~Ile~Ll 54 (576)
..++..+.|+.+||++..+.+|+++.-. +.++++|+..-|
T Consensus 142 ~~~e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lik~AL 182 (188)
T PRK14606 142 IYHESLEALVSLGYPEKQAREAVKHVYREGMKTSELIKEAL 182 (188)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3467889999999999999999999854 444666665544
No 238
>PRK01581 speE spermidine synthase; Validated
Probab=39.53 E-value=67 Score=35.44 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=47.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh-----hhc--CCCCCccccccccccChhhHHHh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW-----ESS--GQTGELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~-----~~t--n~~g~l~~~~DI~~lt~~~Ie~l 513 (576)
+++-+||.+=+|.|++...+.+.+ .++.|..||||+...++.+.+. .+. ..+...++++|..+.- .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL----~-- 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL----S-- 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH----H--
Confidence 455689999888777655444432 3456889999999888777531 111 0122223455554321 1
Q ss_pred hhccCCccEEEecCC
Q 008149 514 IHKLGSIDFVICQNS 528 (576)
Q Consensus 514 ~~~~g~~DLVIGGpP 528 (576)
...+.+|+|+.-.|
T Consensus 222 -~~~~~YDVIIvDl~ 235 (374)
T PRK01581 222 -SPSSLYDVIIIDFP 235 (374)
T ss_pred -hcCCCccEEEEcCC
Confidence 12357999998754
No 239
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.94 E-value=1.5e+02 Score=32.80 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHhCCCCcHHHHHHHHHHhhh-----ccccccc---CCCCC---CCCCCCCCCC-chhhh-hhhhHHHHHH
Q 008149 29 SVNEVDFALDKLGKDAPVYELVDFITAAQI-----SENFEKE---TDDAP---HDNDGTNEDK-SDETL-YGTMEITLQL 95 (576)
Q Consensus 29 s~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~-----l~~~~~e---~~ds~---~~~~~~ne~~-~~e~~-~~~~~k~~~L 95 (576)
-++++.-.||++|..+ -+|++.|-.-|+ +.....+ +++-. +......... ..-.+ -+.++.+..|
T Consensus 267 NP~~L~~lLqql~~~n--P~l~q~I~~n~e~Fl~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lT~eE~~AIeRL 344 (378)
T TIGR00601 267 NPQLLPPLLQQIGQEN--PQLLQQISQHPEQFLQMLNEPVGELAGESDMEGGVGAIAEAGLPQMNQIQVTPEEKEAIERL 344 (378)
T ss_pred CHHHHHHHHHHHHhhC--HHHHHHHHHCHHHHHHHhcCcccccccccccccccccccccCcccccccccCHHHHHHHHHH
Confidence 4677778899999987 367777764322 2222111 01100 0000000000 00122 2246788899
Q ss_pred HhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149 96 LEMGFSENQVSLAIEKFGSKTPISELADKIF 126 (576)
Q Consensus 96 ~~MGFseeEas~AI~r~G~da~i~eLvD~I~ 126 (576)
..|||++..|..|---|+.+ .+.=++++|
T Consensus 345 ~~LGF~r~~viqaY~ACdKN--EelAAn~Lf 373 (378)
T TIGR00601 345 CALGFDRGLVIQAYFACDKN--EELAANYLL 373 (378)
T ss_pred HHcCCCHHHHHHHHHhcCCc--HHHHHHHHH
Confidence 99999999999999999877 333345554
No 240
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.12 E-value=1.1e+02 Score=33.47 Aligned_cols=128 Identities=13% Similarity=0.196 Sum_probs=63.8
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHHhhhhhcccc--------c-------hhhhccccccCCCCCcccccCCCC--
Q 008149 392 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTDT--------L-------GYHLSVLKSMFPGGLTMLSVFSGI-- 453 (576)
Q Consensus 392 ~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lg~sf~vdt--------v-------~~~lsvLK~~f~~~l~VLsLFSGi-- 453 (576)
...||+-||-|.-+....|+..| +.++.|...+..+. + ..-+...+..+. +.+|. ++.+.
T Consensus 221 a~~L~~~fGip~~~~~p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~-gkrv~-i~~~~~~ 298 (410)
T cd01968 221 ARKMEEKYGIPYIEVSFYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARLE-GKKAA-LYTGGVK 298 (410)
T ss_pred HHHHHHHhCCCeEecCcCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEE-EEcCCch
Confidence 67788888888766554566555 44555555554321 1 111112222232 44442 34332
Q ss_pred -ChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149 454 -GGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 454 -GG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
-|+...|+.+|+++..+..-..++...+-++.. .+...++ +.+.+..++.+.+.. ..+||++|++=..
T Consensus 299 ~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~-----~~~~~~v---~~~~~~~e~~~~i~~-~~pDl~ig~s~~~ 367 (410)
T cd01968 299 SWSLVSALQDLGMEVVATGTQKGTKEDYERIKEL-----LGEGTVI---VDDANPRELKKLLKE-KKADLLVAGGKER 367 (410)
T ss_pred HHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHH-----hCCCcEE---EeCCCHHHHHHHHhh-cCCCEEEECCcch
Confidence 356667889999875554334444332222221 1111122 223444455544433 3699999985443
No 241
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=36.34 E-value=40 Score=31.62 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=22.7
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCC
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKFGSKTP 117 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~ 117 (576)
.++|+.+|.+-|-+++||..||.+.|.+..
T Consensus 23 ~~~k~~FL~sKGLt~~EI~~al~~a~~~~~ 52 (136)
T PF04695_consen 23 LEKKIAFLESKGLTEEEIDEALGRAGSPPA 52 (136)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHT--S-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCccc
Confidence 456889999999999999999999999865
No 242
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=35.98 E-value=66 Score=32.31 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=31.5
Q ss_pred cchhhhhHHHhcCCCChHHHHHHHHHhCC---CCcHHHHHHHHHH
Q 008149 14 GLHIEKRASLLMMNFSVNEVDFALDKLGK---DAPVYELVDFITA 55 (576)
Q Consensus 14 ~~~s~~r~~li~MGFs~e~V~kAIqe~Ge---~~~~~~Ile~Ll~ 55 (576)
+..++..+.|+.+||++..+.+|+.+.-. +.++++|+..-|.
T Consensus 153 ~~~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk 197 (203)
T PRK14602 153 SVFRDALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALRAALK 197 (203)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 34567789999999999999999999832 3346666665553
No 243
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=35.31 E-value=48 Score=34.96 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=56.5
Q ss_pred hhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC----CCCccc
Q 008149 423 CFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQ 498 (576)
Q Consensus 423 sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~----~g~l~~ 498 (576)
.|.-..+..|.-.+.- |+.-+||=+=-|.||+..-+.+..- ++-++.||||+.-...-+.|+....+ +-..++
T Consensus 59 e~~yhEml~h~~~~ah--~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~ 135 (282)
T COG0421 59 EFIYHEMLAHVPLLAH--PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEII 135 (282)
T ss_pred hHHHHHHHHhchhhhC--CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE
Confidence 3444445555544433 2223677777788888777776662 57789999999999999988765421 111234
Q ss_pred cccccccChhhHHHhhhcc-CCccEEEe
Q 008149 499 IEDIQALTTKKFESLIHKL-GSIDFVIC 525 (576)
Q Consensus 499 ~~DI~~lt~~~Ie~l~~~~-g~~DLVIG 525 (576)
++|..+ ++... ..+|+||-
T Consensus 136 i~Dg~~--------~v~~~~~~fDvIi~ 155 (282)
T COG0421 136 IDDGVE--------FLRDCEEKFDVIIV 155 (282)
T ss_pred eccHHH--------HHHhCCCcCCEEEE
Confidence 444433 33333 36999884
No 244
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=35.29 E-value=81 Score=31.68 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=42.0
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG 491 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn 491 (576)
||.|... .+-+++|+=||+|+.++-+-.+|=. --|+|+|-|+.+.++.+.|....+
T Consensus 27 ls~L~~~--~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPR--PGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCC--CCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC
Confidence 5556532 3457999988888877766666743 458999999999999999876554
No 245
>PLN03196 MOC1-like protein; Provisional
Probab=34.79 E-value=1.2e+02 Score=34.40 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC-----CCChhhhhHhHh
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGS-----KTPISELADKIF 126 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~-----da~i~eLvD~I~ 126 (576)
.|+..|.+|||+++++..+|.+|-. ...|..-+||..
T Consensus 342 ~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlv 383 (487)
T PLN03196 342 KHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFK 383 (487)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHH
Confidence 5677899999999999999998744 124444455544
No 246
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=34.32 E-value=69 Score=31.92 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=30.4
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCC--CCcHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 54 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge--~~~~~~Ile~Ll 54 (576)
.++..+.|+..||+...+.+|+++.+. +.++++++-.-|
T Consensus 148 ~~e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~aL 188 (194)
T PRK14605 148 NSDILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKLAL 188 (194)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 467889999999999999999999974 334566555444
No 247
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=34.31 E-value=11 Score=42.18 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=51.6
Q ss_pred CCccc-cccccccchhhhHhhhhhhcc-CCceeecccccC-----cccccccccccCCCCCCCCCCCCCCCcccccccCC
Q 008149 249 PPYFF-YGNVVDVSIDCWVKMSHFLYS-LEPEFVNSQYFS-----ALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHT 321 (576)
Q Consensus 249 ppfF~-~eNV~~~~~~~w~~Is~fL~~-i~Pe~vds~~fs-----aa~R~R~y~hNLP~~nR~~~~p~~p~ti~d~lp~~ 321 (576)
|-|++ =||=.-.|...=-.+.+-|-+ +.=.+++|.|+. ++.+++.||.|||.+-. -=|.+|=.|-
T Consensus 332 pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~~sGHIa~vVN~p~~~k~~~w~n~~~~~~--------~Wl~~a~~~~ 403 (445)
T COG3243 332 PVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLSRSGHIAGVVNPPGNAKYQYWTNLPADAE--------AWLSGAKEHP 403 (445)
T ss_pred ceEEEeecccccCCHHHHHHHHHhcCCceEEEEecCceEEEEeCCcchhhhhcCCCCcchHH--------HHHHhhccCC
Confidence 44444 455555666666777777776 455667888874 68999999999776632 1145566788
Q ss_pred CccCCCcCc
Q 008149 322 KKWWPSWDT 330 (576)
Q Consensus 322 ~~~wp~wd~ 330 (576)
-+|||.|+.
T Consensus 404 gsww~~w~~ 412 (445)
T COG3243 404 GSWWPHWQQ 412 (445)
T ss_pred CccccchHH
Confidence 899999986
No 248
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=34.31 E-value=24 Score=38.51 Aligned_cols=95 Identities=21% Similarity=0.273 Sum_probs=56.8
Q ss_pred ccccccC-CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc-C----C-CCCccccccccccC
Q 008149 434 SVLKSMF-PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-G----Q-TGELVQIEDIQALT 506 (576)
Q Consensus 434 svLK~~f-~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t-n----~-~g~l~~~~DI~~lt 506 (576)
|+|=+.| +.+--+++|=||=||=-+=..+|||. -++.+||.++..+-.+.-+.+- + + ....++.+|-....
T Consensus 108 s~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 108 SVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHHhccccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 4444433 34455788999999998889999995 4889999987665444322211 1 1 12235567766544
Q ss_pred hhhHHHhhh-ccCCccEEEecCCCC-Ccc
Q 008149 507 TKKFESLIH-KLGSIDFVICQNSVP-QIP 533 (576)
Q Consensus 507 ~~~Ie~l~~-~~g~~DLVIGGpPCQ-~FS 533 (576)
-.+ ++. .-..||||...+-|- +|.
T Consensus 186 l~d---~~e~~dp~fDivScQF~~HYaFe 211 (389)
T KOG1975|consen 186 LMD---LLEFKDPRFDIVSCQFAFHYAFE 211 (389)
T ss_pred HHH---hccCCCCCcceeeeeeeEeeeec
Confidence 322 221 113399997666443 344
No 249
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.16 E-value=36 Score=36.06 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=30.1
Q ss_pred HHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHH
Q 008149 21 ASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 54 (576)
Q Consensus 21 ~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll 54 (576)
.+|++||||...+.+|+.-+|.-+ ++.+++.|-
T Consensus 5 ~~l~~mgfps~k~e~al~~~~n~~-~e~al~wl~ 37 (290)
T KOG2689|consen 5 QSLEEMGFPSGKAEKALAVYGNRG-IEQALDWLE 37 (290)
T ss_pred HHHHHhcCchhhhhhHhhhhcccc-HHHHHHHHH
Confidence 678999999999999999998888 899999883
No 250
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=34.07 E-value=75 Score=35.10 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=35.8
Q ss_pred cchhhhccccc--cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHH
Q 008149 428 TLGYHLSVLKS--MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 480 (576)
Q Consensus 428 tv~~~lsvLK~--~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~ 480 (576)
|-.|+-.+|.+ -|..+ .|||.=||.|=++.=..+||.+ -|+|||-++-|.
T Consensus 162 TgTY~~Ail~N~sDF~~k-iVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAq 213 (517)
T KOG1500|consen 162 TGTYQRAILENHSDFQDK-IVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQ 213 (517)
T ss_pred hhHHHHHHHhcccccCCc-EEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHH
Confidence 33444445544 34444 4999999999999988899984 589999886653
No 251
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=33.75 E-value=1.8e+02 Score=32.30 Aligned_cols=131 Identities=14% Similarity=0.183 Sum_probs=66.8
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHHhhhhhcccc--------c----hhhhcccc---ccCCCCCcccccCCCCC-
Q 008149 392 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTDT--------L----GYHLSVLK---SMFPGGLTMLSVFSGIG- 454 (576)
Q Consensus 392 ~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lg~sf~vdt--------v----~~~lsvLK---~~f~~~l~VLsLFSGiG- 454 (576)
...||+-||-|.-.....|+..| +.++.|+..+..+. + +.....|. ..+ .+.+| -+|.|..
T Consensus 260 a~~L~e~~GiP~~~~~~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L-~Gkrv-~i~~g~~~ 337 (456)
T TIGR01283 260 ARKMEEKYGIPYFEGSFYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERL-KGKKA-AIYTGGVK 337 (456)
T ss_pred HHHHHHHcCCCEEecCCCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEE-EEEcCCch
Confidence 67788888988766555566665 45666666664321 0 11122222 222 24555 2444421
Q ss_pred --hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149 455 --GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 455 --G~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 532 (576)
++...|..+|+++..+..-...+....-++.. .....++.. +-+..++++.+.. ..+||++||+....+
T Consensus 338 ~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~-----~~~~~~v~~---~~d~~e~~~~i~~-~~pDl~ig~~~~~~~ 408 (456)
T TIGR01283 338 SWSLVSALQDLGMEVVATGTQKGTEEDYARIREL-----MGEGTVMLD---DANPRELLKLLLE-YKADLLIAGGKERYT 408 (456)
T ss_pred HHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHH-----cCCCeEEEe---CCCHHHHHHHHhh-cCCCEEEEccchHHH
Confidence 33445678999875443334444333333221 111122222 2344555554433 369999999776555
Q ss_pred c
Q 008149 533 P 533 (576)
Q Consensus 533 S 533 (576)
+
T Consensus 409 a 409 (456)
T TIGR01283 409 A 409 (456)
T ss_pred H
Confidence 4
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=33.42 E-value=59 Score=33.92 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=42.9
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHH
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFE 511 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie 511 (576)
...+-++||+=|-+|||+.-+-+.|.. -|+|+|..-. .-+|.=.+.+. ..+...+++.++++++.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~-----Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~ 142 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYG-----QLHWKLRNDPRVIVLERTNVRYLTPEDFT 142 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCC-----ccCHhHhcCCcEEEEecCChhhCCHHHcc
Confidence 356788999999999999988888885 4889997642 11232111111 22345677777776664
No 253
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=31.42 E-value=76 Score=31.36 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=29.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCC-CChhhhhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSK-TPISELADK 124 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~d-a~i~eLvD~ 124 (576)
.+-...|..+||+..+|..|+.+.+.+ .++++++-.
T Consensus 150 ~ev~~aL~~LG~~~~~a~~~~~~~~~~~~~~~~~i~~ 186 (192)
T PRK00116 150 EEAVSALVALGYKPKEASKAVAKILKEAASVEELIRE 186 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 355678999999999999999999974 467766543
No 254
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=31.08 E-value=91 Score=31.57 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=37.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
-..+-.|+|-|+|.|-..++..++|-. .+.+|+++........-+.
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~---~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRR---FIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCc---eEEEecCHHHHHHHHHHHH
Confidence 345677999999999999999999964 4669999988777665543
No 255
>PLN02823 spermine synthase
Probab=30.61 E-value=1.3e+02 Score=32.51 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=45.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn----~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
++-+||-|=.|.|++..-+.+.. .++.+..||||+...++.+.|+.... .+...++.+|..+.- + ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L----~---~~~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL----E---KRD 174 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH----h---hCC
Confidence 44567666555555544333322 23568899999999999998875321 122224455554321 1 123
Q ss_pred CCccEEEecC
Q 008149 518 GSIDFVICQN 527 (576)
Q Consensus 518 g~~DLVIGGp 527 (576)
+.+|+|+.-.
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 5799999863
No 256
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.54 E-value=1.4e+02 Score=30.51 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=53.2
Q ss_pred ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149 434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l 513 (576)
.-|+.+++ .-++++=||.|-.+--|.+.=.+....++.|||+.|++.-+..-. .|.-.-..+..|.. ..
T Consensus 37 ~eL~~~~~--~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~-~n~~~~~~V~tdl~-------~~- 105 (209)
T KOG3191|consen 37 AELKGHNP--EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR-CNRVHIDVVRTDLL-------SG- 105 (209)
T ss_pred HHHhhcCc--eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH-hcCCccceeehhHH-------hh-
Confidence 44566553 558999999999887776543355678999999998875332111 11111112223322 11
Q ss_pred hhccCCccEEEecCCCCCcc
Q 008149 514 IHKLGSIDFVICQNSVPQIP 533 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPCQ~FS 533 (576)
+ +.+.+|+++--||=-+-+
T Consensus 106 l-~~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 106 L-RNESVDVLVFNPPYVPTS 124 (209)
T ss_pred h-ccCCccEEEECCCcCcCC
Confidence 1 227999999999865544
No 257
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=30.21 E-value=2.2e+02 Score=32.06 Aligned_cols=128 Identities=14% Similarity=0.225 Sum_probs=67.3
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHHhhhhh---cccc----------------chhhhccccccCCCCCcccccCC
Q 008149 392 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCF---QTDT----------------LGYHLSVLKSMFPGGLTMLSVFS 451 (576)
Q Consensus 392 ~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lg~sf---~vdt----------------v~~~lsvLK~~f~~~l~VLsLFS 451 (576)
...||.-||-|--+....|+..| ..++.|...+ ..+. +...+...+.++. +.+| -+|.
T Consensus 254 A~~L~erfGiP~~~~~p~G~~~T~~~l~~la~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~-Gk~v-aI~~ 331 (475)
T PRK14478 254 ARKMEERYGIPFFEGSFYGIEDTSDSLRQIARLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRLE-GKRV-LLYT 331 (475)
T ss_pred HHHHHHHhCCCEEecCCCcHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEE-EEEc
Confidence 77788899999766554566666 4455666655 2221 1111222333343 3344 2233
Q ss_pred CCC---hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCC
Q 008149 452 GIG---GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 528 (576)
Q Consensus 452 GiG---G~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP 528 (576)
|.. ++...|..+|+++..++.-...+...+.++... .+. .++..| .+..++.+.+.+ .++||++|++-
T Consensus 332 ~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~----~~~-~~v~~d---~~~~e~~~~i~~-~~pDliig~s~ 402 (475)
T PRK14478 332 GGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM----GPD-AHMIDD---ANPRELYKMLKE-AKADIMLSGGR 402 (475)
T ss_pred CCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc----CCC-cEEEeC---CCHHHHHHHHhh-cCCCEEEecCc
Confidence 321 344456889999876666555555433443221 112 223333 344555554433 46999999854
Q ss_pred CC
Q 008149 529 VP 530 (576)
Q Consensus 529 CQ 530 (576)
-.
T Consensus 403 ~~ 404 (475)
T PRK14478 403 SQ 404 (475)
T ss_pred hh
Confidence 43
No 258
>PHA01634 hypothetical protein
Probab=30.16 E-value=1.2e+02 Score=29.32 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=36.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~ 487 (576)
+-+|+|+=++||--++=|-..|.+ -|+++|.++..+++++.+.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~ 71 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVC 71 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHh
Confidence 467999999999999999999984 5999999999888776543
No 259
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=29.04 E-value=1.1e+02 Score=34.67 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=64.6
Q ss_pred CCCcccccCCCCChhHHH----HHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVT----LHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slG----L~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+-++||+.|--||=..- ++.-|+ ++|.|.+..-.++++.+.......++++.+.|..++..+.+ .
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~------~ 310 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF------P 310 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc------C
Confidence 479999999999996533 344564 89999999999999988777677788888888887765443 1
Q ss_pred CCccEEEecCCCCCccc
Q 008149 518 GSIDFVICQNSVPQIPN 534 (576)
Q Consensus 518 g~~DLVIGGpPCQ~FS~ 534 (576)
+.||=|.=-.||.+...
T Consensus 311 ~~fDRVLLDAPCSGtgv 327 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGV 327 (460)
T ss_pred cccceeeecCCCCCCcc
Confidence 36999999999998543
No 260
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=28.43 E-value=51 Score=36.15 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhC
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKFG 113 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~G 113 (576)
.+|-++.++.|||+.|.|...|.|+=
T Consensus 321 ~ddvidKv~~MGf~rDqV~a~v~rl~ 346 (358)
T PF07223_consen 321 YDDVIDKVASMGFRRDQVRATVRRLT 346 (358)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 35778899999999999987777663
No 261
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=27.87 E-value=1e+02 Score=30.79 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=30.1
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCC--CCcHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 54 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge--~~~~~~Ile~Ll 54 (576)
.++....|+.+||++.++.+||.+.-. +.++++++-.-|
T Consensus 149 ~~e~~~aL~~LGy~~~ea~~ai~~i~~~~~~~~~~~ir~aL 189 (195)
T PRK14604 149 DRELSEILISLGYSAAEAAAAIAALPSDAPPDLEERLRLAL 189 (195)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 478889999999999999999999832 234666665544
No 262
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=26.24 E-value=1.6e+02 Score=32.70 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=68.2
Q ss_pred ChhhHHHHhcCCCCCc-ccCCCChHHH-HHHhhhhhccccc-------hhhhcccccc--CCCCCcccccCCCC---Chh
Q 008149 391 DPEHIELILGYPSNHT-QAAGNSLTAR-LESLRHCFQTDTL-------GYHLSVLKSM--FPGGLTMLSVFSGI---GGA 456 (576)
Q Consensus 391 e~~E~E~i~GfP~~~T-~~~~~~~teR-~k~Lg~sf~vdtv-------~~~lsvLK~~--f~~~l~VLsLFSGi---GG~ 456 (576)
....||+-||-|-.+. ...|+..|++ ++.|...+..+.- +.....+.++ +-.+.+| -++.|. -|+
T Consensus 248 ~a~~Lee~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~l~~~~~~l~Gkrv-ai~~~~~~~~~l 326 (432)
T TIGR01285 248 AASLLADRCGVPYIVFPSLMGLEAVDAFLHVLMKISGRAVPERFERQRRQLQDAMLDTHFFLGGKKV-AIAAEPDLLAAW 326 (432)
T ss_pred HHHHHHHHHCCCeEecCCCcChHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhCCCEE-EEEcCHHHHHHH
Confidence 4778899999998776 3557777765 5666555533211 1122222221 1124444 344332 234
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 008149 457 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 533 (576)
Q Consensus 457 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 533 (576)
...|..+|+.+..+++-..++.. +. . ..+ .+..+|. .++++++.+ .++|+|+|++-....+
T Consensus 327 ~~~l~elGm~v~~~~~~~~~~~~----~~----~-~~~-~~~~~D~-----~~l~~~i~~-~~~dliig~s~~k~~A 387 (432)
T TIGR01285 327 ATFFTSMGAQIVAAVTTTGSPLL----QK----L-PVE-TVVIGDL-----EDLEDLACA-AGADLLITNSHGRALA 387 (432)
T ss_pred HHHHHHCCCEEEEEEeCCCCHHH----Hh----C-CcC-cEEeCCH-----HHHHHHHhh-cCCCEEEECcchHHHH
Confidence 44577899998777665555532 11 1 112 2333554 345554433 4699999988665444
No 263
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=26.19 E-value=53 Score=37.76 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149 91 ITLQLLEMGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 91 k~~~L~~MGFseeEas~AI~r~G~d 115 (576)
.+..|++||||++.+..|+--.|+-
T Consensus 561 ~I~qL~~mGfp~~~~~rAL~~tgNq 585 (749)
T COG5207 561 LIRQLVDMGFPEEDAARALGITGNQ 585 (749)
T ss_pred HHHHHHHcCCCHHHHHHHHhhccCc
Confidence 4668999999999999999999984
No 264
>PTZ00357 methyltransferase; Provisional
Probab=25.94 E-value=91 Score=37.43 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=44.4
Q ss_pred HHHHHcCCceeeEEEeeCCHHH-HHHHHH-----HhhhcC---CCCCccccccccccChhhHH---HhhhccCCccEEE-
Q 008149 458 VTLHRLGIKLKGVISIETSETN-RRILKR-----WWESSG---QTGELVQIEDIQALTTKKFE---SLIHKLGSIDFVI- 524 (576)
Q Consensus 458 lGL~~aGi~~k~vvavEid~~a-~~t~k~-----~~~~tn---~~g~l~~~~DI~~lt~~~Ie---~l~~~~g~~DLVI- 524 (576)
.+++.+|++++ ++|||.|+-| .-++.. .|.+.+ ..-..++..|++++...... .+-..+|.+||||
T Consensus 720 rAak~~gvkVr-IyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 720 HAVSALGVRLR-IFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHcCCcEE-EEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 45678999874 7899999554 334443 243210 01123678999999653210 0111246789884
Q ss_pred ---ecCCCCCcc
Q 008149 525 ---CQNSVPQIP 533 (576)
Q Consensus 525 ---GGpPCQ~FS 533 (576)
|.|=|+-+|
T Consensus 799 ELLGSFGDNELS 810 (1072)
T PTZ00357 799 ELLGSLGDNELS 810 (1072)
T ss_pred hhhcccccccCC
Confidence 788888776
No 265
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=25.71 E-value=1.1e+02 Score=32.42 Aligned_cols=117 Identities=21% Similarity=0.063 Sum_probs=65.9
Q ss_pred HHHHHHHhhccCCCchhhhHHHHHhhcccceeeec------ccccCC-CChhhHHHHhcCCCCCcccCCCChHHHHHHhh
Q 008149 349 ERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVG------AYKLGP-VDPEHIELILGYPSNHTQAAGNSLTARLESLR 421 (576)
Q Consensus 349 ~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g------~~~~~p-le~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg 421 (576)
+.++.....+ .+..+.+..+..-.++++-+|.+ ...|++ ++.|.+--++|...= |-+|..+=+++|+
T Consensus 10 ~~l~~~Fvql--~~D~ET~~FL~~S~e~S~~~~~ql~~~l~~~~L~~f~S~T~iNG~LgRG~M----FvfS~~Q~~~LL~ 83 (265)
T PF05219_consen 10 EELQSKFVQL--SPDEETQEFLDRSYEKSDWFFTQLWHSLASSILSWFMSKTDINGILGRGSM----FVFSEEQFRKLLR 83 (265)
T ss_pred HHHHHHHhhc--CCCHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhcCCcE----EEecHHHHHHHhh
Confidence 3344444433 24455555555545555544421 111222 235555555554432 3456666667776
Q ss_pred hhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 008149 422 HCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 484 (576)
Q Consensus 422 ~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k 484 (576)
..-...+ + .-+..++|||=||.|+.+.-+..+ ++-|.+-|+++.-+..++
T Consensus 84 ~~~~~~~---------~-~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~ 133 (265)
T PF05219_consen 84 ISGFSWN---------P-DWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLS 133 (265)
T ss_pred hhccCCC---------C-cccCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHH
Confidence 5421110 1 013468999999999998877553 467999999999887775
No 266
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.83 E-value=97 Score=29.08 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=25.7
Q ss_pred CCCcccccchhhhhHHHhcCCCChHHHHHHHHHhCCCC
Q 008149 7 EPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDA 44 (576)
Q Consensus 7 ~~~~~~~~~~s~~r~~li~MGFs~e~V~kAIqe~Ge~~ 44 (576)
+++|-.-. .+.++++|-.-|.+.++|+.|+++.|...
T Consensus 15 ~p~V~~sp-~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 15 DPKVRNSP-LEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp TTTCCCS--HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred CcccccCC-HHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 45555444 66777777799999999999999999876
No 267
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=24.79 E-value=85 Score=37.83 Aligned_cols=92 Identities=24% Similarity=0.356 Sum_probs=56.8
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 008149 437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+.+| .+.+++|=|+|-|.+-+=..++|.. |+|||.+|++--++|+-.+-....| .....|+......-.++|...
T Consensus 86 ~~~~-~~~~~lDPfAG~GSIPlEAlRLG~~---v~AvelnPvAylfLKavlEyPkkfg-~~liedv~~~~~wI~e~Lk~~ 160 (875)
T COG1743 86 ETPF-EGPKLLDPFAGGGSIPLEALRLGLE---VVAVELNPVAYLFLKAVLEYPKKFG-PELIEDVERWGAWITEQLKND 160 (875)
T ss_pred cCcc-cCCcccccccCCCccchHHHhcCce---eEEEecccHHHHHHHHHHhcchhhh-HHHHHHHHHHHHHHHHHHhhc
Confidence 4445 3567999999999988888899964 7899999999998887654211111 123456665544333333222
Q ss_pred -cCCc---c-------EEEecCCCCCcc
Q 008149 517 -LGSI---D-------FVICQNSVPQIP 533 (576)
Q Consensus 517 -~g~~---D-------LVIGGpPCQ~FS 533 (576)
++++ | =.|-||=|-=+.
T Consensus 161 ~i~e~y~~dvaaYiw~w~VkCP~CG~~t 188 (875)
T COG1743 161 PIGELYDEDVAAYIWTWEVKCPRCGRLT 188 (875)
T ss_pred cchhhccccceeeEEEEEEecCCcCccc
Confidence 1111 1 246688886544
No 268
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=24.32 E-value=3.1e+02 Score=30.04 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc----cccccCCCCCCCCCCC-CCCC--chhhhhhhhHHHHHHHhcCCCH
Q 008149 30 VNEVDFALDKLGKDAPVYELVDFITAAQISE----NFEKETDDAPHDNDGT-NEDK--SDETLYGTMEITLQLLEMGFSE 102 (576)
Q Consensus 30 ~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~----~~~~e~~ds~~~~~~~-ne~~--~~e~~~~~~~k~~~L~~MGFse 102 (576)
+++....+|++|..+| +|++.|-.-|+.= +-+.+.++ .+..+.. .+.. .-..--+..+.|..|..|||++
T Consensus 236 P~ll~~~Lqqlg~~nP--~L~q~Iq~nqe~Fl~mlnep~~~~~-~~~~~~~~~~~~~~~I~vtpee~eAIeRL~alGF~r 312 (340)
T KOG0011|consen 236 PELLHPLLQQLGKQNP--QLLQLIQENQEAFLQLLNEPVEGGD-GGGTGAPAAEGPGHQIQVTPEEKEAIERLEALGFPR 312 (340)
T ss_pred HHHHHHHHHHHhhhCH--HHHHHHHHHHHHHHHHhhccccccc-ccccccccccCCcceEecCHHHHHHHHHHHHhCCcH
Confidence 6788889999999983 7888887655421 11112111 1111111 1110 0111122456788999999999
Q ss_pred HHHHHHHHHhCCCCChhhhhHhHh
Q 008149 103 NQVSLAIEKFGSKTPISELADKIF 126 (576)
Q Consensus 103 eEas~AI~r~G~da~i~eLvD~I~ 126 (576)
.-|..|.=-|..+ .+.-++|++
T Consensus 313 alViqayfACdKN--EelAAN~Ll 334 (340)
T KOG0011|consen 313 ALVIQAYFACDKN--EELAANYLL 334 (340)
T ss_pred HHHHHHHHhcCcc--HHHHHHHHH
Confidence 9999999888766 333344444
No 269
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.23 E-value=1.1e+02 Score=32.24 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=58.4
Q ss_pred HHHHhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHH-cC-------CceeeEEEeeCCHHHHHHHHHHh
Q 008149 416 RLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LG-------IKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 416 R~k~Lg~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-aG-------i~~k~vvavEid~~a~~t~k~~~ 487 (576)
|-++--+-.|.|....+|. .--+|+||.+--|.-+--|.+ +. -.-+.++|||+-+.+
T Consensus 22 RARSAFKLlqideef~i~~-------gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------- 86 (294)
T KOG1099|consen 22 RARSAFKLLQIDEEFQIFE-------GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------- 86 (294)
T ss_pred hHHhHHHHhhhhhhhhHHh-------hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------
Confidence 4444444557776554442 235799999999998866643 22 111237889988775
Q ss_pred hhcCCCCCccccccccccChhhHHHhhhccC--CccEEEe-cCC
Q 008149 488 ESSGQTGELVQIEDIQALTTKKFESLIHKLG--SIDFVIC-QNS 528 (576)
Q Consensus 488 ~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g--~~DLVIG-GpP 528 (576)
.-+|...+.+||++.+.. +..+..|| ..||||. |.|
T Consensus 87 ---PI~GV~qlq~DIT~~sta--e~Ii~hfggekAdlVvcDGAP 125 (294)
T KOG1099|consen 87 ---PIEGVIQLQGDITSASTA--EAIIEHFGGEKADLVVCDGAP 125 (294)
T ss_pred ---ccCceEEeecccCCHhHH--HHHHHHhCCCCccEEEeCCCC
Confidence 345777778999988653 33444453 6888873 444
No 270
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=24.13 E-value=80 Score=33.23 Aligned_cols=77 Identities=21% Similarity=0.177 Sum_probs=50.3
Q ss_pred cccccCCCCChhHHHHHHcCCc--eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIK--LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~--~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
++|++=||+|-...-+-+--=+ + .|++||.++.|...++.+= .........++.+|+.+.+..-. .-|.+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l-~v~acDfsp~Ai~~vk~~~----~~~e~~~~afv~Dlt~~~~~~~~-~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRL-KVYACDFSPRAIELVKKSS----GYDESRVEAFVWDLTSPSLKEPP-EEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCe-EEEEcCCChHHHHHHHhcc----ccchhhhcccceeccchhccCCC-CcCccce
Confidence 7888889999877666542211 2 4799999999999998631 22223446788888887743211 2367887
Q ss_pred EEecC
Q 008149 523 VICQN 527 (576)
Q Consensus 523 VIGGp 527 (576)
++.=+
T Consensus 148 it~IF 152 (264)
T KOG2361|consen 148 ITLIF 152 (264)
T ss_pred EEEEE
Confidence 76543
No 271
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.95 E-value=79 Score=31.87 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCC
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGS 114 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~ 114 (576)
++-+..|+++||++.||..|+..+-.
T Consensus 145 ~ea~~AL~~LGy~~~ea~~al~~v~~ 170 (196)
T PRK13901 145 KELEQSIVNMGFDRKLVNSAIKEIML 170 (196)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45778999999999999999987643
No 272
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=23.93 E-value=17 Score=30.69 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=23.8
Q ss_pred cccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH
Q 008149 447 LSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 481 (576)
Q Consensus 447 LsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~ 481 (576)
||+=||.|.+...+.... +..-+.++|+++.+..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~ 34 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLE 34 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTS
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHH
Confidence 466789999888887763 3345779999999863
No 273
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=23.70 E-value=92 Score=31.92 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=27.6
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 008149 445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 486 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~ 486 (576)
++.||=+|.|=+++-...+. +-|+|+|.|+.-.+..+.+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN 73 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEEN 73 (252)
T ss_pred ceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhc
Confidence 47788888888885443332 5689999999866555543
No 274
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=23.57 E-value=1.5e+02 Score=30.78 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=45.6
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccc
Q 008149 430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQA 504 (576)
Q Consensus 430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~ 504 (576)
++++..| +.. .|.+||+-=.|.|.++++|-++=-+-=-|++.|+.+.-.+.-+.++........ .+...||.+
T Consensus 30 ~~I~~~l-~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 30 SYILMRL-DIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHT-T---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred HHHHHHc-CCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 4444443 333 388899999999999999986411212489999999988888888876544332 245678753
No 275
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=22.37 E-value=95 Score=27.08 Aligned_cols=28 Identities=29% Similarity=0.103 Sum_probs=21.2
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCC
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDA 44 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~ 44 (576)
.+....|..+|+|..++.|..+.+|++.
T Consensus 9 ~~~~~~L~~~gl~~~~a~kl~~~yg~~a 36 (94)
T PF14490_consen 9 RELMAFLQEYGLSPKLAMKLYKKYGDDA 36 (94)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHH-TTH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhHHH
Confidence 4456778899999999999999999854
No 276
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.65 E-value=3.3e+02 Score=30.10 Aligned_cols=130 Identities=13% Similarity=0.145 Sum_probs=65.4
Q ss_pred ChhhHHHHhcCCCCCcccCCCChH-HHHHHhhhhhcccc-------ch----hh---hccccccCCCCCcccccCCCCC-
Q 008149 391 DPEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTDT-------LG----YH---LSVLKSMFPGGLTMLSVFSGIG- 454 (576)
Q Consensus 391 e~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lg~sf~vdt-------v~----~~---lsvLK~~f~~~l~VLsLFSGiG- 454 (576)
....||+-||-|...+...|+..| +.++.|+..+..+. +. .. +...+.++ .+.+|+ +|.|..
T Consensus 234 ~a~~Le~~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L-~Gkrv~-i~~g~~~ 311 (421)
T cd01976 234 IARMMEEKYGIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRL-EGKTVM-LYVGGLR 311 (421)
T ss_pred HHHHHHHHhCCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEE-EECCCCc
Confidence 367899999999888776677666 44555555553321 01 11 11122333 345555 554432
Q ss_pred --hhHHHHHHcCCceeeEEEeeC--CHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149 455 --GAEVTLHRLGIKLKGVISIET--SETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 455 --G~slGL~~aGi~~k~vvavEi--d~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
.+...+..+|+++. +.+... ++...+..+. . ..+. ++. .+-+..++++.+.+ -++||++|++...
T Consensus 312 ~~~~~~~l~elGmevv-~~g~~~~~~~~~~~~~~~----~-~~~~-~i~---~~~d~~e~~~~i~~-~~pDliig~~~~~ 380 (421)
T cd01976 312 PRHYIGAYEDLGMEVV-GTGYEFAHRDDYERTEVI----P-KEGT-LLY---DDVTHYELEEFVKR-LKPDLIGSGIKEK 380 (421)
T ss_pred HHHHHHHHHHCCCEEE-EEEeecCCHHHHhhHHhh----c-CCce-EEE---cCCCHHHHHHHHHH-hCCCEEEecCcch
Confidence 33345678999764 233432 1221112111 0 0111 111 22233445444432 4899999999866
Q ss_pred Ccc
Q 008149 531 QIP 533 (576)
Q Consensus 531 ~FS 533 (576)
..+
T Consensus 381 ~~a 383 (421)
T cd01976 381 YVF 383 (421)
T ss_pred hhh
Confidence 655
No 277
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=21.34 E-value=34 Score=39.22 Aligned_cols=38 Identities=26% Similarity=0.674 Sum_probs=25.9
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCc-ccccccCCCccCCCcCc
Q 008149 286 SALSRREGYLHNLPTTNRFHIPPEPPMT-IQDAIPHTKKWWPSWDT 330 (576)
Q Consensus 286 saa~R~R~y~hNLP~~nR~~~~p~~p~t-i~d~lp~~~~~wp~wd~ 330 (576)
.+.+-||+||.| .. +|..|-+ +..|=++.-+|||.|..
T Consensus 461 Pp~~~k~~y~~~---~~----~~~~~~~w~~~a~~~~gSWW~~w~~ 499 (532)
T TIGR01838 461 PPSKNKYGHWTN---AA----LPADPEVWLAGATEHPGSWWPDWAA 499 (532)
T ss_pred CCCCCCCceeeC---CC----CCCCHHHHHhcCCcCCCCchHhHHH
Confidence 357899999999 11 2233333 55566788899998864
No 278
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=21.33 E-value=1.4e+02 Score=25.31 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHh----CC------CCChhhhhHhHhhcc
Q 008149 91 ITLQLLEMGFSENQVSLAIEKF----GS------KTPISELADKIFSGQ 129 (576)
Q Consensus 91 k~~~L~~MGFseeEas~AI~r~----G~------da~i~eLvD~I~Aaq 129 (576)
-+.++..|||++++|.-.|.++ |. +.+-..|+|.|+..|
T Consensus 14 A~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~ 62 (65)
T PF10440_consen 14 ALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQ 62 (65)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHh
Confidence 4458999999999999777664 43 345667999999877
No 279
>PRK10904 DNA adenine methylase; Provisional
Probab=21.33 E-value=53 Score=34.06 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=34.6
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149 432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 485 (576)
Q Consensus 432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~ 485 (576)
++..|.+++|..-+.++-|+|.|+..+.+.. +.++-+|+|+.-.+.|+.
T Consensus 17 l~~~i~~~~P~~~~yvEPF~GggaV~l~~~~-----~~~ilND~n~~Lin~y~~ 65 (271)
T PRK10904 17 LLDDIKRHLPKGECLIEPFVGAGSVFLNTDF-----SRYILADINSDLISLYNI 65 (271)
T ss_pred HHHHHHHhCCCCCcEEeccCCcceeeEecCC-----CeEEEEeCCHHHHHHHHH
Confidence 3445566677656799999998887775422 235668999998777764
No 280
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=21.29 E-value=1.7e+02 Score=29.88 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=46.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn----~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
|++-+||-|=.|.||....+.+.. .++-+..||||+...++.++|+.... .+...++.+|-.. ++..
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--------~l~~ 145 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--------FLKE 145 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--------HHHT
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--------HHHh
Confidence 355677777667777766665554 24568899999999999999876421 1112234444332 2222
Q ss_pred -cC-CccEEEecCC
Q 008149 517 -LG-SIDFVICQNS 528 (576)
Q Consensus 517 -~g-~~DLVIGGpP 528 (576)
.. .+|+||--.+
T Consensus 146 ~~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 146 TQEEKYDVIIVDLT 159 (246)
T ss_dssp SSST-EEEEEEESS
T ss_pred ccCCcccEEEEeCC
Confidence 23 6999997554
No 281
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=21.22 E-value=1.7e+02 Score=30.82 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=59.6
Q ss_pred hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccCh--hhHHHhhhccCCccEEEecCCCCC
Q 008149 455 GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT--KKFESLIHKLGSIDFVICQNSVPQ 531 (576)
Q Consensus 455 G~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~--~~Ie~l~~~~g~~DLVIGGpPCQ~ 531 (576)
|....++++|-++-.-+..| ..-.+ .+ +-.... ..++...||++-.. ..++++...||.+|.|+- |-+
T Consensus 23 GIAk~l~~~GAeL~fTy~~e--~l~kr-v~---~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~lD~lVH---sIa 93 (259)
T COG0623 23 GIAKALAEQGAELAFTYQGE--RLEKR-VE---ELAEELGSDLVLPCDVTNDESIDALFATIKKKWGKLDGLVH---SIA 93 (259)
T ss_pred HHHHHHHHcCCEEEEEeccH--HHHHH-HH---HHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhCcccEEEE---Eec
Confidence 67778999999765444444 22222 22 211111 34567789986432 112333356899999984 666
Q ss_pred ccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcccC
Q 008149 532 IPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 576 (576)
Q Consensus 532 FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~~ 576 (576)
|+...-... .++.-.|.|+.-...-=-|.|+.+.++.+++|.
T Consensus 94 Fa~k~el~G---~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~ 135 (259)
T COG0623 94 FAPKEELKG---DYLDTSREGFLIAMDISAYSFTALAKAARPLMN 135 (259)
T ss_pred cCChHHhCC---cccccCHHHHHhHhhhhHhhHHHHHHHHHHhcC
Confidence 763110000 011113444332233345789999999999883
No 282
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=20.77 E-value=2e+02 Score=28.18 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHHHHHhcCCCHHHHHH
Q 008149 28 FSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSL 107 (576)
Q Consensus 28 Fs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~~L~~MGFseeEas~ 107 (576)
-++|.|.||++.+|=+.=+++..+.|..|..- -.....|...|-+-|.||||+..
T Consensus 67 Ia~EHV~KALe~LgF~eYiee~~~vl~~~K~~-------------------------~~~~~~kssk~e~~Gi~eEEL~~ 121 (156)
T KOG0871|consen 67 IAPEHVIKALENLGFGEYIEEAEEVLENCKEE-------------------------AKKRRRKSSKFEKSGIPEEELLR 121 (156)
T ss_pred CCHHHHHHHHHHcchHHHHHHHHHHHHHHHHH-------------------------HHHhhhhhhhHHhcCCCHHHHHH
Confidence 46899999999999876455555555543211 01112244467789999999864
No 283
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=20.75 E-value=55 Score=33.74 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=32.2
Q ss_pred ccccccCCC-CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149 434 SVLKSMFPG-GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 485 (576)
Q Consensus 434 svLK~~f~~-~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~ 485 (576)
..+.+++|. .-+.++-|+|.|+..+.+.. . .++.+|+|+.-...|+.
T Consensus 16 ~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~---~--~~~lND~n~~Li~~~~~ 63 (266)
T TIGR00571 16 PEIKKHLPKNFNCLVEPFVGGGAVFFNLNP---K--RYLLNDINEDLINLYKA 63 (266)
T ss_pred HHHHHhcCcccCEEEEecCCcchhheeecC---c--EEEEecCCHHHHHHHHH
Confidence 334555664 34799999988887665432 2 26678999998877764
No 284
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=20.60 E-value=1e+02 Score=33.61 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=30.8
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
...-...+++||+..+.|.+|+.-- =++ -|--||||++
T Consensus 135 ~e~~V~~Im~MGy~re~V~~AlRAa-fNN-PeRAVEYLl~ 172 (340)
T KOG0011|consen 135 YEQTVQQIMEMGYDREEVERALRAA-FNN-PERAVEYLLN 172 (340)
T ss_pred hHHHHHHHHHhCccHHHHHHHHHHh-hCC-hhhhHHHHhc
Confidence 3456678899999999999999983 335 6788999995
No 285
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=20.48 E-value=1.1e+02 Score=24.25 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.0
Q ss_pred HHHHHHhc---CCCHHHHHHHHHH
Q 008149 91 ITLQLLEM---GFSENQVSLAIEK 111 (576)
Q Consensus 91 k~~~L~~M---GFseeEas~AI~r 111 (576)
-+..|+.= ||++|||.-||+.
T Consensus 24 l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 24 LYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHc
Confidence 34478865 9999999999985
No 286
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.38 E-value=3.3e+02 Score=29.38 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=63.5
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHHhhhhhccc------------cchhhhccccccCCCCCcccccCCCCC---h
Q 008149 392 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTD------------TLGYHLSVLKSMFPGGLTMLSVFSGIG---G 455 (576)
Q Consensus 392 ~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lg~sf~vd------------tv~~~lsvLK~~f~~~l~VLsLFSGiG---G 455 (576)
...|++-+|-|.-+....++..+ +.++.|+..+... .+...+..++.++ .+.+| -++.|.+ +
T Consensus 223 a~~L~~r~GiP~~~~~p~G~~~t~~~l~~l~~~lg~~~~~~~~i~~~~~~~~~~l~~~~~~l-~gkrv-~I~~~~~~~~~ 300 (406)
T cd01967 223 AREMEERYGIPYMEVNFYGFEDTSESLRKIAKFFGDEEKAEEVIAEEEARIKPELEKYRERL-KGKKV-IIYTGGARSWH 300 (406)
T ss_pred HHHHHHhhCCCEEEecCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCEE-EEEccCcchHH
Confidence 56788888888876655566666 4455566555431 1122222233333 24444 2344433 4
Q ss_pred hHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 008149 456 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 533 (576)
Q Consensus 456 ~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 533 (576)
+...+..+|+++. .+........ .++..+.. ....... |.+.+..++.+.+.+ -.+|||+|++-....+
T Consensus 301 ~~~~l~elG~~v~-~~~~~~~~~~--~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~-~~pdl~ig~~~~~~~a 369 (406)
T cd01967 301 VIAALRELGMEVV-AAGYEFGHDD--DYERIRKI--LDEGTLL---VDDYNDLELEELVEK-LKPDLILSGIKEKYVA 369 (406)
T ss_pred HHHHHHHcCCEEE-EEEEecCCHH--HHHHHHhc--CCCCcEE---EeCCCHHHHHHHHHh-cCCCEEEeCCcchHHH
Confidence 4566778999763 3333333221 22222111 1111111 223333344433332 3689999987654443
No 287
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=20.30 E-value=3.7e+02 Score=30.14 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=63.2
Q ss_pred hhhHHHHhcCCCCCc-ccCCCChHHH-HHHhhhhhccccch-------hhhcccccc---CCCCCcccccCCCCChhHHH
Q 008149 392 PEHIELILGYPSNHT-QAAGNSLTAR-LESLRHCFQTDTLG-------YHLSVLKSM---FPGGLTMLSVFSGIGGAEVT 459 (576)
Q Consensus 392 ~~E~E~i~GfP~~~T-~~~~~~~teR-~k~Lg~sf~vdtv~-------~~lsvLK~~---f~~~l~VLsLFSGiGG~slG 459 (576)
...||+-||-|.-+. ...|+..|++ ++.|+..+..+.-. ..+..+.++ +-.+.+|. ++ |--..-+|
T Consensus 242 A~~Le~~fGiPyi~~~~P~G~~~T~~~l~~ia~~~g~~~~e~i~~er~~~~~~~~~~~~~~l~Gkrv~-i~-g~~~~~~~ 319 (454)
T cd01973 242 AEFLQKKFDVPAILGPTPIGIKNTDAFLQNIKELTGKPIPESLVRERGIAIDALADLAHMFFANKKVA-IF-GHPDLVIG 319 (454)
T ss_pred HHHHHHHHCCCeeccCCCcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EE-cCHHHHHH
Confidence 566777888876543 3556666643 34444433211111 011111111 11356663 55 33355666
Q ss_pred HHH----cCCceeeEEEeeCCHHH--HHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc-CCccEEEecCCCCCc
Q 008149 460 LHR----LGIKLKGVISIETSETN--RRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL-GSIDFVICQNSVPQI 532 (576)
Q Consensus 460 L~~----aGi~~k~vvavEid~~a--~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~-g~~DLVIGGpPCQ~F 532 (576)
+.+ +|+.+.+++..+-+..- ...++..-...+....++... +..++++.+.+. .++||++|++-+...
T Consensus 320 l~~fl~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~-----d~~e~~~~i~~~~~~~dliig~s~~~~~ 394 (454)
T cd01973 320 LAEFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNA-----DLWELEKRIKNKGLELDLILGHSKGRYI 394 (454)
T ss_pred HHHHHHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECC-----CHHHHHHHHHhcCCCCCEEEECCccHHH
Confidence 666 89987655554422221 112222111111111122222 334555555443 469999999877554
Q ss_pred c
Q 008149 533 P 533 (576)
Q Consensus 533 S 533 (576)
+
T Consensus 395 A 395 (454)
T cd01973 395 A 395 (454)
T ss_pred H
Confidence 4
Done!