Query 008149
Match_columns 576
No_of_seqs 220 out of 1018
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 19:18:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ubt_Y Modification methylase 99.9 7.5E-27 2.6E-31 236.5 7.9 105 444-575 1-105 (331)
2 2qrv_A DNA (cytosine-5)-methyl 99.9 3.4E-25 1.2E-29 226.2 12.1 116 439-574 12-127 (295)
3 4h0n_A DNMT2; SAH binding, tra 99.9 4.4E-24 1.5E-28 221.1 9.8 110 443-574 3-113 (333)
4 3qv2_A 5-cytosine DNA methyltr 99.9 3.3E-24 1.1E-28 221.6 8.8 117 435-574 2-124 (327)
5 3me5_A Cytosine-specific methy 99.9 5.4E-24 1.9E-28 230.5 9.1 125 443-575 88-222 (482)
6 3g7u_A Cytosine-specific methy 99.9 2.8E-23 9.6E-28 218.1 9.8 113 443-575 2-114 (376)
7 2c7p_A Modification methylase 99.9 6.5E-23 2.2E-27 211.6 11.3 105 442-574 10-114 (327)
8 4ft4_B DNA (cytosine-5)-methyl 99.9 2.5E-23 8.7E-28 234.6 7.1 122 441-575 210-427 (784)
9 1g55_A DNA cytosine methyltran 99.9 6.9E-23 2.4E-27 212.0 8.8 110 443-574 2-113 (343)
10 4dkj_A Cytosine-specific methy 99.9 3.2E-22 1.1E-26 212.4 7.5 110 443-570 10-167 (403)
11 3swr_A DNA (cytosine-5)-methyl 99.8 3.8E-20 1.3E-24 214.6 5.9 119 441-575 538-664 (1002)
12 3av4_A DNA (cytosine-5)-methyl 99.8 4.8E-20 1.7E-24 218.4 4.2 118 442-575 850-975 (1330)
13 2qrv_B DNA (cytosine-5)-methyl 99.8 1.4E-19 4.7E-24 179.4 5.9 86 442-574 32-117 (230)
14 2pv0_B DNA (cytosine-5)-methyl 99.7 1.7E-18 5.9E-23 182.3 7.6 87 441-574 187-273 (386)
15 2qrv_A DNA (cytosine-5)-methyl 99.6 5.5E-15 1.9E-19 150.9 10.6 160 249-441 132-293 (295)
16 4h0n_A DNMT2; SAH binding, tra 99.5 7.3E-15 2.5E-19 152.2 2.8 177 248-437 111-332 (333)
17 3qv2_A 5-cytosine DNA methyltr 99.4 2.1E-14 7.1E-19 148.5 0.5 178 248-440 122-325 (327)
18 4ae4_A Ubiquitin-associated pr 99.2 1.2E-11 4E-16 111.5 4.3 107 17-129 9-115 (118)
19 3ubt_Y Modification methylase 98.9 9E-11 3.1E-15 118.7 0.1 192 246-438 100-322 (331)
20 4dkj_A Cytosine-specific methy 98.9 2.6E-10 8.8E-15 121.2 2.9 185 247-442 176-394 (403)
21 2c7p_A Modification methylase 98.8 2.6E-09 8.9E-14 110.2 6.4 181 247-439 111-321 (327)
22 3me5_A Cytosine-specific methy 98.8 3.4E-09 1.2E-13 115.1 7.4 177 246-440 217-456 (482)
23 1g55_A DNA cytosine methyltran 98.7 1.1E-08 3.9E-13 105.7 7.1 54 383-436 288-341 (343)
24 2qrv_B DNA (cytosine-5)-methyl 98.6 4.9E-09 1.7E-13 104.1 1.3 60 243-303 116-176 (230)
25 2lbc_A Ubiquitin carboxyl-term 98.5 6.3E-07 2.2E-11 80.8 11.5 109 18-129 5-117 (126)
26 4ft4_B DNA (cytosine-5)-methyl 98.3 5.1E-07 1.8E-11 102.1 7.1 56 375-432 678-733 (784)
27 3g7u_A Cytosine-specific methy 98.1 9.2E-07 3.2E-11 92.9 3.8 53 384-438 313-365 (376)
28 3c0k_A UPF0064 protein YCCW; P 97.8 4.9E-05 1.7E-09 79.2 9.6 86 442-533 220-307 (396)
29 2igt_A SAM dependent methyltra 97.8 6E-05 2.1E-09 77.5 9.2 85 442-533 153-239 (332)
30 2pv0_B DNA (cytosine-5)-methyl 97.7 2E-05 7E-10 83.4 4.5 55 249-304 279-333 (386)
31 3k6r_A Putative transferase PH 97.7 4.7E-05 1.6E-09 77.1 6.8 83 438-531 121-204 (278)
32 1wy7_A Hypothetical protein PH 97.6 0.00014 4.7E-09 67.5 8.6 78 442-533 49-126 (207)
33 2frn_A Hypothetical protein PH 97.6 0.00011 3.8E-09 72.9 7.4 81 440-531 123-204 (278)
34 3gdh_A Trimethylguanosine synt 97.5 0.00013 4.3E-09 69.5 7.2 81 442-534 78-159 (241)
35 3swr_A DNA (cytosine-5)-methyl 97.5 0.00015 5.2E-09 84.9 8.1 49 385-435 945-993 (1002)
36 2b78_A Hypothetical protein SM 97.4 0.00044 1.5E-08 72.2 9.2 86 442-533 212-299 (385)
37 4dmg_A Putative uncharacterize 97.4 0.00018 6E-09 76.0 6.1 77 442-529 214-290 (393)
38 3p9n_A Possible methyltransfer 97.3 0.00021 7.2E-09 65.7 5.5 82 442-531 44-125 (189)
39 1ws6_A Methyltransferase; stru 97.3 0.00041 1.4E-08 61.6 6.9 86 437-530 36-121 (171)
40 2fpo_A Methylase YHHF; structu 97.3 0.00028 9.5E-09 66.4 5.8 77 443-528 55-131 (202)
41 2ift_A Putative methylase HI07 97.3 0.00042 1.5E-08 65.1 6.9 80 442-529 53-135 (201)
42 3a27_A TYW2, uncharacterized p 97.2 0.00054 1.8E-08 67.9 7.9 80 440-529 117-196 (272)
43 3ajd_A Putative methyltransfer 97.2 0.00043 1.5E-08 68.5 6.3 87 442-534 83-171 (274)
44 2as0_A Hypothetical protein PH 97.2 0.00071 2.4E-08 70.4 8.2 86 442-533 217-303 (396)
45 1wxx_A TT1595, hypothetical pr 97.1 0.0012 4.1E-08 68.5 9.1 85 442-533 209-293 (382)
46 2yx1_A Hypothetical protein MJ 97.1 0.00074 2.5E-08 69.1 7.1 76 441-531 194-270 (336)
47 3bt7_A TRNA (uracil-5-)-methyl 97.1 0.00053 1.8E-08 71.0 5.8 84 443-533 214-309 (369)
48 1ne2_A Hypothetical protein TA 97.0 0.001 3.5E-08 61.6 7.1 74 442-533 51-124 (200)
49 3v97_A Ribosomal RNA large sub 97.0 0.0011 3.6E-08 75.0 7.7 83 442-533 539-623 (703)
50 3lpm_A Putative methyltransfer 96.9 0.0019 6.5E-08 62.8 8.2 84 442-533 49-133 (259)
51 3evz_A Methyltransferase; NYSG 96.9 0.0022 7.5E-08 60.3 8.1 83 440-533 53-137 (230)
52 3grz_A L11 mtase, ribosomal pr 96.9 0.0015 5E-08 60.6 6.8 87 433-531 51-137 (205)
53 2fhp_A Methylase, putative; al 96.8 0.0027 9.2E-08 57.2 7.4 81 442-528 44-125 (187)
54 1ixk_A Methyltransferase; open 96.8 0.0028 9.5E-08 64.2 8.2 86 442-535 118-203 (315)
55 3tma_A Methyltransferase; thum 96.7 0.0057 1.9E-07 62.4 10.3 80 442-530 203-283 (354)
56 1oqy_A HHR23A, UV excision rep 96.7 0.0025 8.7E-08 67.1 7.9 38 16-55 168-205 (368)
57 1wgn_A UBAP1, ubiquitin associ 96.7 0.0013 4.4E-08 53.0 4.2 39 89-129 20-58 (63)
58 3av4_A DNA (cytosine-5)-methyl 96.7 0.0024 8E-08 76.9 8.3 50 247-296 971-1029(1330)
59 2jjq_A Uncharacterized RNA met 96.7 0.0028 9.4E-08 67.5 8.0 78 441-532 289-366 (425)
60 3tm4_A TRNA (guanine N2-)-meth 96.7 0.0048 1.6E-07 64.0 9.5 80 441-529 216-296 (373)
61 3axs_A Probable N(2),N(2)-dime 96.7 0.002 6.7E-08 68.3 6.4 80 442-531 52-137 (392)
62 2h1r_A Dimethyladenosine trans 96.6 0.0021 7E-08 64.8 6.1 100 418-532 18-119 (299)
63 2b3t_A Protein methyltransfera 96.6 0.0035 1.2E-07 61.4 7.5 82 442-533 109-190 (276)
64 1whc_A RSGI RUH-027, UBA/UBX 3 96.6 0.0022 7.6E-08 51.6 4.9 38 18-56 11-48 (64)
65 3mti_A RRNA methylase; SAM-dep 96.6 0.0033 1.1E-07 57.1 6.7 84 436-529 16-99 (185)
66 2b9e_A NOL1/NOP2/SUN domain fa 96.6 0.004 1.4E-07 63.5 8.0 88 442-535 102-190 (309)
67 1vg5_A RSGI RUH-014, rhomboid 96.6 0.0024 8.1E-08 53.0 5.1 40 88-129 29-68 (73)
68 2h00_A Methyltransferase 10 do 96.6 0.0041 1.4E-07 59.7 7.7 86 442-533 65-154 (254)
69 4dzr_A Protein-(glutamine-N5) 96.6 0.002 6.9E-08 58.9 5.0 87 441-533 29-115 (215)
70 1nv8_A HEMK protein; class I a 96.5 0.0051 1.8E-07 61.5 8.2 83 442-534 123-207 (284)
71 1ify_A HHR23A, UV excision rep 96.5 0.0023 8E-08 48.9 4.3 39 88-128 8-46 (49)
72 2cos_A Serine/threonine protei 96.5 0.0021 7.2E-08 50.4 4.0 40 17-57 10-49 (54)
73 2g3q_A Protein YBL047C; endocy 96.5 0.0036 1.2E-07 46.1 5.0 37 89-127 5-41 (43)
74 2esr_A Methyltransferase; stru 96.4 0.0055 1.9E-07 55.2 7.1 79 442-529 31-110 (177)
75 2ekk_A UBA domain from E3 ubiq 96.4 0.0021 7.3E-08 48.4 3.5 37 16-55 9-45 (47)
76 2ekk_A UBA domain from E3 ubiq 96.4 0.0026 8.8E-08 47.9 3.8 36 89-127 10-45 (47)
77 2crn_A Ubash3A protein; compac 96.4 0.0031 1E-07 50.9 4.5 37 19-56 12-48 (64)
78 3m4x_A NOL1/NOP2/SUN family pr 96.4 0.0031 1E-07 68.0 5.9 86 442-535 105-191 (456)
79 1ify_A HHR23A, UV excision rep 96.4 0.0034 1.2E-07 47.9 4.4 38 16-55 8-45 (49)
80 2g3q_A Protein YBL047C; endocy 96.4 0.0048 1.6E-07 45.5 5.0 37 17-55 5-41 (43)
81 1dus_A MJ0882; hypothetical pr 96.3 0.0079 2.7E-07 53.9 7.1 77 442-530 52-130 (194)
82 1ve3_A Hypothetical protein PH 96.3 0.008 2.8E-07 55.8 7.4 77 440-528 36-112 (227)
83 2dul_A N(2),N(2)-dimethylguano 96.3 0.004 1.4E-07 65.3 5.8 80 442-531 47-143 (378)
84 3ll7_A Putative methyltransfer 96.3 0.0057 1.9E-07 65.2 7.0 80 443-531 94-175 (410)
85 2ozv_A Hypothetical protein AT 96.3 0.006 2.1E-07 59.8 6.7 89 442-532 36-128 (260)
86 1zq9_A Probable dimethyladenos 96.3 0.0043 1.5E-07 62.0 5.7 100 418-532 4-106 (285)
87 1uwv_A 23S rRNA (uracil-5-)-me 96.2 0.0077 2.6E-07 63.7 7.9 85 442-533 286-370 (433)
88 2dak_A Ubiquitin carboxyl-term 96.2 0.0045 1.5E-07 49.5 4.6 39 89-129 10-48 (63)
89 3m6w_A RRNA methylase; rRNA me 96.2 0.0055 1.9E-07 66.3 6.7 86 442-535 101-186 (464)
90 1wgn_A UBAP1, ubiquitin associ 96.2 0.0036 1.2E-07 50.5 3.8 37 18-56 21-57 (63)
91 1vek_A UBP14, ubiquitin-specif 96.2 0.0086 2.9E-07 50.8 6.4 40 16-56 29-68 (84)
92 2dag_A Ubiquitin carboxyl-term 96.2 0.0052 1.8E-07 50.9 4.8 40 16-56 9-48 (74)
93 1wji_A Tudor domain containing 96.2 0.0058 2E-07 49.2 4.9 39 90-130 11-49 (63)
94 3lbf_A Protein-L-isoaspartate 96.1 0.015 5.1E-07 53.8 8.4 81 442-533 77-157 (210)
95 2frx_A Hypothetical protein YE 96.1 0.0071 2.4E-07 65.4 7.1 85 442-534 117-202 (479)
96 2vdv_E TRNA (guanine-N(7)-)-me 96.1 0.0083 2.8E-07 57.8 6.7 85 442-532 49-141 (246)
97 1vg5_A RSGI RUH-014, rhomboid 96.1 0.0061 2.1E-07 50.5 4.8 39 16-56 29-67 (73)
98 2pxx_A Uncharacterized protein 96.1 0.0091 3.1E-07 54.7 6.5 82 436-529 36-117 (215)
99 3dmg_A Probable ribosomal RNA 96.1 0.011 3.6E-07 62.1 7.8 78 442-531 233-310 (381)
100 1z96_A DNA-damage, UBA-domain 96.1 0.0076 2.6E-07 43.2 4.7 35 89-125 5-39 (40)
101 1veg_A NEDD8 ultimate buster-1 96.0 0.006 2.1E-07 51.8 4.7 39 89-129 30-68 (83)
102 2dak_A Ubiquitin carboxyl-term 96.0 0.0057 2E-07 48.9 4.3 39 16-56 9-47 (63)
103 3k0b_A Predicted N6-adenine-sp 96.0 0.012 4.1E-07 62.0 7.8 79 442-529 201-317 (393)
104 2f8l_A Hypothetical protein LM 96.0 0.0069 2.4E-07 61.6 5.6 80 442-531 130-213 (344)
105 3gru_A Dimethyladenosine trans 95.9 0.009 3.1E-07 60.8 6.3 97 419-530 27-125 (295)
106 3eey_A Putative rRNA methylase 95.9 0.0063 2.1E-07 55.8 4.7 82 440-529 20-103 (197)
107 2pbf_A Protein-L-isoaspartate 95.9 0.02 6.8E-07 53.7 8.2 97 432-532 70-175 (227)
108 2nxc_A L11 mtase, ribosomal pr 95.9 0.0092 3.1E-07 58.2 6.0 75 441-528 119-193 (254)
109 3ldu_A Putative methylase; str 95.9 0.0093 3.2E-07 62.5 6.3 78 442-528 195-310 (385)
110 2yxl_A PH0851 protein, 450AA l 95.9 0.017 5.9E-07 61.4 8.4 88 442-535 259-346 (450)
111 2cpw_A CBL-interacting protein 95.9 0.0061 2.1E-07 49.1 3.8 38 18-56 21-58 (64)
112 3fut_A Dimethyladenosine trans 95.9 0.0077 2.6E-07 60.5 5.4 96 419-530 24-121 (271)
113 1wiv_A UBP14, ubiquitin-specif 95.8 0.0092 3.1E-07 49.3 4.9 39 89-129 30-68 (73)
114 3tqs_A Ribosomal RNA small sub 95.8 0.0084 2.9E-07 59.5 5.5 99 418-528 5-105 (255)
115 3m70_A Tellurite resistance pr 95.8 0.017 5.9E-07 56.2 7.6 76 442-530 120-195 (286)
116 1wji_A Tudor domain containing 95.8 0.012 4E-07 47.3 5.2 40 16-57 9-48 (63)
117 2ih2_A Modification methylase 95.8 0.0075 2.6E-07 62.1 5.1 96 418-534 16-113 (421)
118 1veg_A NEDD8 ultimate buster-1 95.8 0.0094 3.2E-07 50.6 4.7 41 16-58 29-69 (83)
119 3e05_A Precorrin-6Y C5,15-meth 95.7 0.024 8.2E-07 52.4 7.9 80 442-530 40-119 (204)
120 2yxd_A Probable cobalt-precorr 95.7 0.018 6.2E-07 51.1 6.8 75 442-528 35-109 (183)
121 3ldg_A Putative uncharacterize 95.7 0.017 5.7E-07 60.8 7.5 79 442-529 194-310 (384)
122 3cgg_A SAM-dependent methyltra 95.7 0.013 4.5E-07 52.5 5.9 77 439-531 43-119 (195)
123 1i1n_A Protein-L-isoaspartate 95.7 0.019 6.5E-07 53.8 7.2 91 433-532 68-164 (226)
124 3q87_B N6 adenine specific DNA 95.7 0.0086 3E-07 54.6 4.5 69 443-533 24-92 (170)
125 1wiv_A UBP14, ubiquitin-specif 95.7 0.01 3.6E-07 49.0 4.5 40 15-56 28-67 (73)
126 3sm3_A SAM-dependent methyltra 95.7 0.017 5.7E-07 53.6 6.5 87 434-531 22-113 (235)
127 1whc_A RSGI RUH-027, UBA/UBX 3 95.6 0.012 4.1E-07 47.3 4.7 39 90-129 11-49 (64)
128 3l8d_A Methyltransferase; stru 95.6 0.014 5E-07 54.7 6.0 83 431-527 42-124 (242)
129 1sqg_A SUN protein, FMU protei 95.6 0.02 6.9E-07 60.3 7.6 86 442-535 246-331 (429)
130 3ihp_A Ubiquitin carboxyl-term 95.6 0.032 1.1E-06 64.5 9.8 104 17-128 653-758 (854)
131 2knz_A Ubiquilin-4; cytoplasm, 95.5 0.017 5.9E-07 44.7 5.0 40 16-57 11-51 (53)
132 2xvm_A Tellurite resistance pr 95.5 0.031 1.1E-06 50.6 7.6 75 443-529 33-107 (199)
133 1yzh_A TRNA (guanine-N(7)-)-me 95.5 0.024 8.3E-07 53.0 7.0 82 442-530 41-122 (214)
134 1z96_A DNA-damage, UBA-domain 95.5 0.015 5.2E-07 41.6 4.3 37 16-54 4-40 (40)
135 2knz_A Ubiquilin-4; cytoplasm, 95.5 0.021 7.1E-07 44.2 5.3 39 89-129 12-51 (53)
136 2dag_A Ubiquitin carboxyl-term 95.4 0.016 5.6E-07 47.9 4.9 40 89-129 10-49 (74)
137 3njr_A Precorrin-6Y methylase; 95.4 0.033 1.1E-06 52.4 7.7 75 442-527 55-130 (204)
138 2qm3_A Predicted methyltransfe 95.4 0.023 7.9E-07 58.7 7.2 80 443-531 173-253 (373)
139 4ae4_A Ubiquitin-associated pr 95.4 0.015 5.2E-07 52.2 5.0 37 91-129 11-47 (118)
140 2kw5_A SLR1183 protein; struct 95.4 0.022 7.6E-07 52.2 6.3 73 441-526 29-101 (202)
141 1qam_A ERMC' methyltransferase 95.4 0.027 9.2E-07 54.8 7.2 96 419-529 7-104 (244)
142 2cpw_A CBL-interacting protein 95.4 0.015 5.2E-07 46.8 4.3 39 90-129 21-59 (64)
143 2jy5_A Ubiquilin-1; UBA, alter 95.3 0.019 6.4E-07 44.4 4.6 38 16-55 12-50 (52)
144 3e23_A Uncharacterized protein 95.3 0.04 1.4E-06 51.0 7.6 70 440-527 41-110 (211)
145 1l3i_A Precorrin-6Y methyltran 95.2 0.029 1E-06 50.0 6.4 79 442-531 33-112 (192)
146 3kkz_A Uncharacterized protein 95.2 0.035 1.2E-06 53.5 7.3 82 441-532 45-127 (267)
147 3pfg_A N-methyltransferase; N, 95.2 0.019 6.5E-07 55.1 5.4 78 433-527 41-118 (263)
148 3mb5_A SAM-dependent methyltra 95.2 0.039 1.3E-06 52.7 7.4 79 442-530 93-173 (255)
149 3g5l_A Putative S-adenosylmeth 95.2 0.024 8.3E-07 53.9 5.9 73 442-527 44-116 (253)
150 1y8c_A S-adenosylmethionine-de 95.2 0.038 1.3E-06 51.6 7.1 74 441-527 36-109 (246)
151 1vbf_A 231AA long hypothetical 95.1 0.048 1.6E-06 51.1 7.8 79 442-533 70-148 (231)
152 2crn_A Ubash3A protein; compac 95.1 0.019 6.4E-07 46.3 4.2 38 91-129 12-49 (64)
153 1m6y_A S-adenosyl-methyltransf 95.1 0.04 1.4E-06 56.1 7.7 85 442-531 26-110 (301)
154 2dai_A Ubadc1, ubiquitin assoc 95.1 0.032 1.1E-06 47.2 5.7 39 16-56 29-67 (83)
155 3s1s_A Restriction endonucleas 95.1 0.023 7.8E-07 65.6 6.3 104 420-530 294-410 (878)
156 3f4k_A Putative methyltransfer 95.0 0.067 2.3E-06 50.7 8.5 81 441-531 45-126 (257)
157 1dv0_A DNA repair protein HHR2 95.0 0.0087 3E-07 45.4 1.8 37 89-127 5-41 (47)
158 3ggd_A SAM-dependent methyltra 95.0 0.052 1.8E-06 51.4 7.6 87 438-533 52-138 (245)
159 4dcm_A Ribosomal RNA large sub 94.9 0.031 1.1E-06 58.2 6.4 78 443-530 223-303 (375)
160 1dl5_A Protein-L-isoaspartate 94.9 0.05 1.7E-06 54.6 7.6 84 442-533 75-158 (317)
161 2oyr_A UPF0341 protein YHIQ; a 94.9 0.027 9.3E-07 56.3 5.5 77 444-531 90-176 (258)
162 3dh0_A SAM dependent methyltra 94.8 0.043 1.5E-06 50.8 6.5 80 441-528 36-115 (219)
163 3dou_A Ribosomal RNA large sub 94.8 0.037 1.3E-06 51.9 6.1 78 440-531 23-103 (191)
164 3bgv_A MRNA CAP guanine-N7 met 94.8 0.035 1.2E-06 55.1 6.2 95 429-527 21-122 (313)
165 1wzn_A SAM-dependent methyltra 94.8 0.06 2.1E-06 51.0 7.5 71 442-525 41-111 (252)
166 3vc1_A Geranyl diphosphate 2-C 94.7 0.051 1.7E-06 54.0 7.0 85 430-526 106-192 (312)
167 4htf_A S-adenosylmethionine-de 94.7 0.039 1.3E-06 53.7 6.0 80 440-529 66-146 (285)
168 2jy5_A Ubiquilin-1; UBA, alter 94.7 0.042 1.4E-06 42.4 4.9 37 89-127 13-50 (52)
169 3ou2_A SAM-dependent methyltra 94.7 0.048 1.7E-06 50.0 6.3 81 429-526 34-114 (218)
170 1o54_A SAM-dependent O-methylt 94.6 0.059 2E-06 52.6 7.2 79 442-530 112-192 (277)
171 4azs_A Methyltransferase WBDD; 94.6 0.015 5.3E-07 63.5 3.2 77 441-526 65-141 (569)
172 2dai_A Ubadc1, ubiquitin assoc 94.6 0.038 1.3E-06 46.8 4.9 39 89-129 30-68 (83)
173 2r6z_A UPF0341 protein in RSP 94.6 0.027 9.1E-07 55.9 4.6 81 442-529 83-171 (258)
174 1jsx_A Glucose-inhibited divis 94.6 0.059 2E-06 49.5 6.6 71 443-525 66-138 (207)
175 3lcc_A Putative methyl chlorid 94.6 0.042 1.4E-06 51.7 5.8 77 444-532 68-145 (235)
176 1o9g_A RRNA methyltransferase; 94.5 0.026 8.9E-07 54.2 4.3 46 442-487 51-97 (250)
177 3mgg_A Methyltransferase; NYSG 94.4 0.084 2.9E-06 50.8 7.7 83 440-531 35-117 (276)
178 2dkl_A Trinucleotide repeat co 94.4 0.036 1.2E-06 47.1 4.4 38 17-56 22-59 (85)
179 2yvl_A TRMI protein, hypotheti 94.4 0.089 3E-06 49.6 7.7 76 442-528 91-167 (248)
180 3duw_A OMT, O-methyltransferas 94.4 0.077 2.6E-06 49.5 7.2 83 442-531 58-145 (223)
181 1xxl_A YCGJ protein; structura 94.4 0.07 2.4E-06 50.7 7.0 79 441-530 20-98 (239)
182 2zig_A TTHA0409, putative modi 94.4 0.039 1.3E-06 55.3 5.3 45 442-489 235-279 (297)
183 2pwy_A TRNA (adenine-N(1)-)-me 94.3 0.088 3E-06 49.9 7.5 80 442-530 96-177 (258)
184 1yb2_A Hypothetical protein TA 94.3 0.086 2.9E-06 51.6 7.6 76 441-528 109-188 (275)
185 3bzb_A Uncharacterized protein 94.3 0.12 4.1E-06 51.1 8.6 44 442-487 79-123 (281)
186 2okc_A Type I restriction enzy 94.3 0.053 1.8E-06 57.3 6.4 83 442-533 171-267 (445)
187 1pjz_A Thiopurine S-methyltran 94.3 0.061 2.1E-06 50.3 6.1 75 441-525 21-107 (203)
188 3h2b_A SAM-dependent methyltra 94.2 0.065 2.2E-06 49.0 6.1 69 443-527 42-110 (203)
189 3kr9_A SAM-dependent methyltra 94.2 0.099 3.4E-06 51.3 7.7 54 436-490 9-62 (225)
190 3dtn_A Putative methyltransfer 94.2 0.068 2.3E-06 50.0 6.3 78 441-532 43-122 (234)
191 2yqz_A Hypothetical protein TT 94.2 0.086 2.9E-06 49.9 7.0 77 440-528 37-113 (263)
192 3v97_A Ribosomal RNA large sub 94.2 0.063 2.2E-06 60.6 7.0 82 442-529 190-313 (703)
193 3hm2_A Precorrin-6Y C5,15-meth 94.1 0.081 2.8E-06 47.0 6.3 82 442-531 25-106 (178)
194 1xdz_A Methyltransferase GIDB; 94.1 0.046 1.6E-06 52.2 5.0 80 442-527 70-149 (240)
195 2ar0_A M.ecoki, type I restric 94.1 0.044 1.5E-06 60.0 5.4 106 419-533 147-275 (541)
196 2dkl_A Trinucleotide repeat co 94.1 0.055 1.9E-06 46.0 4.8 39 89-129 22-60 (85)
197 1mjf_A Spermidine synthase; sp 94.1 0.043 1.5E-06 54.5 4.9 78 441-529 74-162 (281)
198 3jwh_A HEN1; methyltransferase 94.1 0.14 4.8E-06 47.5 8.1 79 442-529 29-112 (217)
199 3r0q_C Probable protein argini 94.0 0.089 3E-06 54.5 7.4 74 442-527 63-137 (376)
200 2ooa_A E3 ubiquitin-protein li 94.0 0.079 2.7E-06 41.3 5.2 37 17-55 12-48 (52)
201 2p7i_A Hypothetical protein; p 94.0 0.065 2.2E-06 49.9 5.7 81 430-527 31-111 (250)
202 2gb4_A Thiopurine S-methyltran 94.0 0.076 2.6E-06 52.1 6.5 74 442-525 68-158 (252)
203 2ex4_A Adrenal gland protein A 94.0 0.045 1.5E-06 51.9 4.7 76 442-527 79-154 (241)
204 1ri5_A MRNA capping enzyme; me 94.0 0.065 2.2E-06 51.7 5.8 79 440-527 62-141 (298)
205 3ftd_A Dimethyladenosine trans 93.9 0.031 1.1E-06 55.0 3.5 98 418-530 7-106 (249)
206 3ofk_A Nodulation protein S; N 93.9 0.053 1.8E-06 50.1 4.9 72 442-527 51-122 (216)
207 1vl5_A Unknown conserved prote 93.9 0.11 3.7E-06 49.7 7.1 93 425-530 22-114 (260)
208 3dxy_A TRNA (guanine-N(7)-)-me 93.9 0.068 2.3E-06 51.1 5.7 85 442-532 34-118 (218)
209 3g89_A Ribosomal RNA small sub 93.9 0.065 2.2E-06 52.4 5.7 79 441-525 79-157 (249)
210 3jwg_A HEN1, methyltransferase 93.9 0.13 4.3E-06 47.8 7.4 46 442-488 29-74 (219)
211 2yxe_A Protein-L-isoaspartate 93.8 0.12 4.2E-06 47.7 7.3 84 442-533 77-160 (215)
212 3iv6_A Putative Zn-dependent a 93.8 0.071 2.4E-06 53.3 5.9 81 441-533 44-124 (261)
213 3m33_A Uncharacterized protein 93.8 0.1 3.5E-06 49.2 6.7 72 441-527 47-119 (226)
214 3d2l_A SAM-dependent methyltra 93.8 0.079 2.7E-06 49.6 5.8 75 438-526 29-103 (243)
215 1inl_A Spermidine synthase; be 93.8 0.055 1.9E-06 54.3 5.0 81 441-530 89-174 (296)
216 1g8a_A Fibrillarin-like PRE-rR 93.7 0.17 6E-06 47.3 8.1 79 442-528 73-152 (227)
217 2dah_A Ubiquilin-3; UBA domain 93.6 0.071 2.4E-06 41.6 4.3 39 89-129 10-49 (54)
218 1jg1_A PIMT;, protein-L-isoasp 93.6 0.13 4.6E-06 48.7 7.2 81 442-532 91-171 (235)
219 3adn_A Spermidine synthase; am 93.6 0.08 2.7E-06 53.4 5.9 81 441-529 82-167 (294)
220 3ntv_A MW1564 protein; rossman 93.6 0.12 4E-06 49.3 6.8 84 442-532 71-155 (232)
221 3hem_A Cyclopropane-fatty-acyl 93.6 0.15 5.3E-06 50.0 7.8 73 441-527 71-145 (302)
222 2fca_A TRNA (guanine-N(7)-)-me 93.5 0.13 4.4E-06 48.6 6.8 82 442-530 38-119 (213)
223 2ooa_A E3 ubiquitin-protein li 93.5 0.068 2.3E-06 41.7 3.9 29 89-117 12-40 (52)
224 3tr6_A O-methyltransferase; ce 93.5 0.16 5.4E-06 47.3 7.3 81 443-530 65-151 (225)
225 1r18_A Protein-L-isoaspartate( 93.4 0.069 2.4E-06 50.3 4.9 94 430-532 72-176 (227)
226 3lec_A NADB-rossmann superfami 93.4 0.15 5.3E-06 50.2 7.4 53 437-490 16-68 (230)
227 1i9g_A Hypothetical protein RV 93.4 0.15 5E-06 49.3 7.2 79 442-529 99-181 (280)
228 1zx0_A Guanidinoacetate N-meth 93.4 0.081 2.8E-06 50.1 5.3 75 442-525 60-134 (236)
229 2bwb_A Ubiquitin-like protein 93.4 0.12 4E-06 39.0 5.0 37 89-127 8-45 (46)
230 3g2m_A PCZA361.24; SAM-depende 93.4 0.11 3.6E-06 51.1 6.2 71 443-525 83-156 (299)
231 2pjd_A Ribosomal RNA small sub 93.3 0.17 5.7E-06 51.4 7.8 76 443-530 197-272 (343)
232 3hnr_A Probable methyltransfer 93.3 0.16 5.6E-06 46.8 7.1 73 442-530 45-117 (220)
233 1vek_A UBP14, ubiquitin-specif 93.3 0.091 3.1E-06 44.4 4.8 40 89-129 30-69 (84)
234 1iy9_A Spermidine synthase; ro 93.3 0.078 2.7E-06 52.6 5.1 80 441-529 74-158 (275)
235 1fbn_A MJ fibrillarin homologu 93.3 0.17 5.8E-06 47.9 7.3 77 442-527 74-151 (230)
236 2bwb_A Ubiquitin-like protein 93.2 0.11 3.8E-06 39.1 4.7 38 16-55 7-45 (46)
237 3bxo_A N,N-dimethyltransferase 93.2 0.072 2.5E-06 49.7 4.5 75 434-525 32-106 (239)
238 3q7e_A Protein arginine N-meth 93.1 0.14 4.9E-06 52.3 7.0 76 442-528 66-142 (349)
239 2avn_A Ubiquinone/menaquinone 93.1 0.11 3.7E-06 50.0 5.8 73 439-528 51-123 (260)
240 2gpy_A O-methyltransferase; st 93.1 0.12 4.1E-06 48.7 6.0 85 442-532 54-139 (233)
241 3ujc_A Phosphoethanolamine N-m 93.1 0.13 4.4E-06 48.6 6.1 75 441-528 54-129 (266)
242 1dv0_A DNA repair protein HHR2 93.0 0.041 1.4E-06 41.6 2.1 36 18-55 6-41 (47)
243 3gnl_A Uncharacterized protein 93.0 0.19 6.6E-06 50.0 7.4 53 437-490 16-68 (244)
244 2qfm_A Spermine synthase; sper 93.0 0.12 4.2E-06 54.3 6.3 83 441-529 187-277 (364)
245 2y1w_A Histone-arginine methyl 92.9 0.17 5.7E-06 51.7 7.1 76 442-529 50-126 (348)
246 3lkd_A Type I restriction-modi 92.9 0.066 2.2E-06 58.9 4.3 84 442-530 221-308 (542)
247 3bkw_A MLL3908 protein, S-aden 92.9 0.19 6.4E-06 47.0 6.9 74 442-528 43-116 (243)
248 2d9s_A CBL E3 ubiquitin protei 92.9 0.13 4.4E-06 40.3 4.7 39 16-56 9-47 (53)
249 2ipx_A RRNA 2'-O-methyltransfe 92.8 0.19 6.4E-06 47.5 6.9 79 442-528 77-156 (233)
250 2gs9_A Hypothetical protein TT 92.8 0.15 5.2E-06 46.8 6.1 77 436-530 30-106 (211)
251 2d9s_A CBL E3 ubiquitin protei 92.8 0.087 3E-06 41.2 3.6 27 89-115 10-36 (53)
252 2fyt_A Protein arginine N-meth 92.8 0.17 5.9E-06 51.6 7.0 75 442-527 64-139 (340)
253 1xtp_A LMAJ004091AAA; SGPP, st 92.6 0.11 3.7E-06 49.0 4.9 74 442-527 93-166 (254)
254 1wj7_A Hypothetical protein (R 92.6 0.13 4.3E-06 45.5 4.8 40 88-129 39-79 (104)
255 3u81_A Catechol O-methyltransf 92.5 0.14 4.8E-06 48.1 5.5 84 442-532 58-147 (221)
256 3dlc_A Putative S-adenosyl-L-m 92.5 0.27 9.1E-06 44.8 7.3 75 445-530 46-122 (219)
257 4gek_A TRNA (CMO5U34)-methyltr 92.4 0.22 7.7E-06 49.0 7.1 78 440-527 68-147 (261)
258 2avd_A Catechol-O-methyltransf 92.3 0.29 9.9E-06 45.7 7.4 85 442-530 69-156 (229)
259 1wr1_B Ubiquitin-like protein 92.3 0.16 5.3E-06 40.3 4.6 39 16-56 17-56 (58)
260 1g60_A Adenine-specific methyl 92.3 0.12 4E-06 50.8 4.8 45 441-488 211-255 (260)
261 1g6q_1 HnRNP arginine N-methyl 92.2 0.24 8.3E-06 50.1 7.2 76 442-528 38-114 (328)
262 1wr1_B Ubiquitin-like protein 92.2 0.19 6.4E-06 39.8 4.9 38 89-128 18-56 (58)
263 2juj_A E3 ubiquitin-protein li 92.1 0.21 7E-06 39.4 4.9 39 16-56 7-45 (56)
264 2p8j_A S-adenosylmethionine-de 92.1 0.36 1.2E-05 44.0 7.6 74 442-527 23-97 (209)
265 3tfw_A Putative O-methyltransf 92.1 0.28 9.7E-06 47.3 7.2 82 442-531 63-148 (248)
266 3ocj_A Putative exported prote 92.1 0.095 3.3E-06 51.8 3.9 80 439-527 115-195 (305)
267 1nkv_A Hypothetical protein YJ 92.0 0.31 1.1E-05 46.0 7.3 74 441-526 35-110 (256)
268 3khk_A Type I restriction-modi 92.0 0.12 4.2E-06 56.6 5.1 80 444-530 246-340 (544)
269 3e8s_A Putative SAM dependent 92.0 0.15 5E-06 46.8 4.8 76 442-530 52-127 (227)
270 2fk8_A Methoxy mycolic acid sy 92.0 0.32 1.1E-05 48.0 7.6 73 441-527 89-163 (318)
271 3dli_A Methyltransferase; PSI- 91.8 0.19 6.3E-06 47.6 5.4 44 438-484 37-80 (240)
272 2lbc_A Ubiquitin carboxyl-term 91.8 0.15 5.2E-06 45.5 4.5 39 90-129 5-43 (126)
273 3cc8_A Putative methyltransfer 91.7 0.25 8.7E-06 45.3 6.1 73 441-529 31-103 (230)
274 3gu3_A Methyltransferase; alph 91.6 0.2 6.8E-06 49.0 5.6 75 441-528 21-98 (284)
275 1kpg_A CFA synthase;, cyclopro 91.6 0.4 1.4E-05 46.4 7.7 73 441-527 63-137 (287)
276 1ej0_A FTSJ; methyltransferase 91.5 0.16 5.5E-06 44.2 4.3 80 441-533 21-102 (180)
277 2p35_A Trans-aconitate 2-methy 91.5 0.34 1.2E-05 45.8 6.9 74 442-532 33-108 (259)
278 1vej_A Riken cDNA 4931431F19; 91.5 0.19 6.5E-06 41.7 4.4 39 16-56 29-68 (74)
279 3g5t_A Trans-aconitate 3-methy 91.4 0.38 1.3E-05 47.1 7.4 83 442-528 36-122 (299)
280 3dr5_A Putative O-methyltransf 91.4 0.17 5.9E-06 48.4 4.8 82 443-531 57-141 (221)
281 4hc4_A Protein arginine N-meth 91.3 0.25 8.5E-06 52.0 6.3 71 443-525 84-155 (376)
282 3b3j_A Histone-arginine methyl 91.3 0.26 8.8E-06 53.1 6.5 75 442-528 158-233 (480)
283 1yub_A Ermam, rRNA methyltrans 91.2 0.021 7.2E-07 55.2 -1.9 77 442-531 29-105 (245)
284 2o07_A Spermidine synthase; st 91.2 0.14 4.9E-06 51.7 4.1 81 441-529 94-178 (304)
285 3g07_A 7SK snRNA methylphospha 91.1 0.4 1.4E-05 47.3 7.2 52 432-486 36-89 (292)
286 2b25_A Hypothetical protein; s 91.0 0.35 1.2E-05 48.5 6.8 83 442-531 105-199 (336)
287 3uzu_A Ribosomal RNA small sub 90.9 0.3 1E-05 49.0 6.1 81 442-528 42-123 (279)
288 2i7c_A Spermidine synthase; tr 90.8 0.2 6.8E-06 49.8 4.7 81 441-529 77-161 (283)
289 2cp8_A NEXT to BRCA1 gene 1 pr 90.8 0.27 9.1E-06 38.6 4.4 37 18-56 11-48 (54)
290 1vej_A Riken cDNA 4931431F19; 90.7 0.3 1E-05 40.5 4.9 39 89-129 30-69 (74)
291 2juj_A E3 ubiquitin-protein li 90.6 0.23 7.9E-06 39.1 3.8 31 88-118 7-37 (56)
292 4hg2_A Methyltransferase type 90.5 0.15 5E-06 50.4 3.4 77 433-526 30-106 (257)
293 2o57_A Putative sarcosine dime 90.4 0.54 1.8E-05 45.7 7.3 76 441-527 81-158 (297)
294 2dah_A Ubiquilin-3; UBA domain 90.3 0.37 1.3E-05 37.5 4.8 38 17-56 10-48 (54)
295 1uir_A Polyamine aminopropyltr 90.1 0.23 8E-06 50.1 4.6 81 441-529 76-161 (314)
296 3bus_A REBM, methyltransferase 90.1 0.8 2.7E-05 43.7 8.2 80 442-532 61-142 (273)
297 2pt6_A Spermidine synthase; tr 90.1 0.22 7.5E-06 50.7 4.4 80 441-528 115-198 (321)
298 3k9o_A Ubiquitin-conjugating e 89.7 0.34 1.2E-05 46.5 5.1 37 89-127 164-200 (201)
299 3bwc_A Spermidine synthase; SA 89.7 0.33 1.1E-05 48.7 5.2 82 441-529 94-179 (304)
300 2cos_A Serine/threonine protei 89.4 0.31 1.1E-05 38.3 3.7 34 92-126 13-46 (54)
301 1p91_A Ribosomal RNA large sub 89.4 0.64 2.2E-05 44.5 6.9 71 441-527 84-156 (269)
302 2oo9_A E3 ubiquitin-protein li 89.4 0.32 1.1E-05 37.0 3.6 27 89-115 5-31 (46)
303 2oo9_A E3 ubiquitin-protein li 89.3 0.59 2E-05 35.5 5.0 38 17-56 5-42 (46)
304 4fzv_A Putative methyltransfer 89.3 1 3.6E-05 47.0 8.8 88 442-532 148-236 (359)
305 3ccf_A Cyclopropane-fatty-acyl 89.2 0.7 2.4E-05 44.7 7.1 71 442-529 57-127 (279)
306 2hnk_A SAM-dependent O-methylt 89.2 0.69 2.3E-05 43.9 6.9 49 442-490 60-108 (239)
307 3i9f_A Putative type 11 methyl 89.2 0.83 2.9E-05 40.3 7.0 70 441-529 16-85 (170)
308 3thr_A Glycine N-methyltransfe 89.1 0.83 2.8E-05 44.2 7.5 76 442-525 57-136 (293)
309 2nyu_A Putative ribosomal RNA 89.1 0.49 1.7E-05 42.8 5.5 77 441-529 21-107 (196)
310 1ixs_A Holliday junction DNA h 88.9 0.52 1.8E-05 37.6 4.8 37 89-125 18-57 (62)
311 3c3y_A Pfomt, O-methyltransfer 88.7 0.75 2.6E-05 44.0 6.7 83 442-531 70-159 (237)
312 2dna_A Unnamed protein product 88.6 0.44 1.5E-05 38.9 4.3 44 82-129 15-59 (67)
313 3c3p_A Methyltransferase; NP_9 88.5 0.72 2.5E-05 42.6 6.3 78 443-531 57-138 (210)
314 2b2c_A Spermidine synthase; be 88.4 0.41 1.4E-05 48.7 4.9 80 441-528 107-190 (314)
315 2i62_A Nicotinamide N-methyltr 88.1 0.28 9.5E-06 46.4 3.3 45 442-488 56-100 (265)
316 2plw_A Ribosomal RNA methyltra 87.8 1 3.5E-05 40.9 6.8 55 441-506 21-76 (201)
317 3fzg_A 16S rRNA methylase; met 87.8 0.44 1.5E-05 46.4 4.4 49 441-490 48-96 (200)
318 2oo3_A Protein involved in cat 87.7 0.25 8.4E-06 50.4 2.7 91 429-530 80-170 (283)
319 1qyr_A KSGA, high level kasuga 87.5 0.76 2.6E-05 45.3 6.1 82 442-531 21-102 (252)
320 2vdw_A Vaccinia virus capping 87.4 1.4 4.7E-05 44.3 8.0 47 441-489 47-93 (302)
321 1xj5_A Spermidine synthase 1; 87.3 0.44 1.5E-05 49.0 4.4 81 441-528 119-203 (334)
322 3ege_A Putative methyltransfer 87.0 0.4 1.4E-05 46.1 3.7 73 441-530 33-105 (261)
323 1vlm_A SAM-dependent methyltra 87.0 0.52 1.8E-05 43.9 4.3 71 434-527 40-110 (219)
324 3cbg_A O-methyltransferase; cy 86.9 1.2 4.2E-05 42.2 7.0 84 443-530 73-159 (232)
325 2dna_A Unnamed protein product 86.6 0.74 2.5E-05 37.6 4.5 40 16-57 19-59 (67)
326 3gjy_A Spermidine synthase; AP 86.6 0.46 1.6E-05 48.9 4.1 77 443-528 90-168 (317)
327 3uwp_A Histone-lysine N-methyl 86.1 1.4 4.8E-05 47.5 7.6 80 442-529 173-262 (438)
328 2cmg_A Spermidine synthase; tr 86.0 0.47 1.6E-05 46.9 3.6 73 441-527 71-147 (262)
329 3mq2_A 16S rRNA methyltransfer 85.9 0.52 1.8E-05 43.7 3.7 40 442-482 27-66 (218)
330 3htx_A HEN1; HEN1, small RNA m 85.6 0.74 2.5E-05 53.7 5.5 44 442-485 721-764 (950)
331 3fpf_A Mtnas, putative unchara 85.6 1.5 5.1E-05 44.9 7.2 72 441-525 121-194 (298)
332 2cwb_A Chimera of immunoglobul 85.0 1.1 3.9E-05 39.6 5.2 39 16-56 66-105 (108)
333 3r3h_A O-methyltransferase, SA 85.0 0.44 1.5E-05 46.1 2.8 85 443-531 61-148 (242)
334 1sui_A Caffeoyl-COA O-methyltr 84.9 1.4 4.9E-05 42.6 6.5 83 442-531 79-168 (247)
335 2cwb_A Chimera of immunoglobul 84.6 1.2 4E-05 39.5 5.1 38 89-128 67-105 (108)
336 3ufb_A Type I restriction-modi 83.3 0.94 3.2E-05 49.4 4.9 83 443-529 218-312 (530)
337 3ckk_A TRNA (guanine-N(7)-)-me 83.0 1.6 5.3E-05 42.1 5.8 85 442-532 46-136 (235)
338 4fsd_A Arsenic methyltransfera 83.0 1.1 3.8E-05 46.0 5.0 81 442-528 83-175 (383)
339 3orh_A Guanidinoacetate N-meth 82.6 0.99 3.4E-05 43.2 4.2 76 441-525 59-134 (236)
340 1boo_A Protein (N-4 cytosine-s 81.1 0.76 2.6E-05 46.7 2.9 44 442-488 252-295 (323)
341 1ixs_A Holliday junction DNA h 81.0 2.3 8E-05 33.8 5.1 40 15-54 16-58 (62)
342 3id6_C Fibrillarin-like rRNA/T 81.0 2.4 8.1E-05 41.5 6.3 80 441-528 75-155 (232)
343 1u2z_A Histone-lysine N-methyl 80.4 3.9 0.00013 43.7 8.3 41 441-483 241-282 (433)
344 3hp7_A Hemolysin, putative; st 80.2 1 3.5E-05 45.8 3.5 71 442-525 85-157 (291)
345 3e46_A Ubiquitin-conjugating e 79.3 2 6.7E-05 43.0 5.1 36 89-126 216-251 (253)
346 1qzz_A RDMB, aclacinomycin-10- 79.2 5.9 0.0002 39.8 8.7 81 441-533 181-262 (374)
347 2r3s_A Uncharacterized protein 79.1 2.8 9.7E-05 41.3 6.3 79 441-532 164-245 (335)
348 2zfu_A Nucleomethylin, cerebra 78.7 1.5 5.1E-05 40.4 3.8 74 424-527 50-123 (215)
349 2a14_A Indolethylamine N-methy 78.5 0.63 2.2E-05 45.0 1.3 45 442-488 55-99 (263)
350 4df3_A Fibrillarin-like rRNA/T 78.4 4.7 0.00016 39.6 7.5 82 441-530 76-158 (233)
351 2oxt_A Nucleoside-2'-O-methylt 77.8 1 3.5E-05 44.6 2.6 35 440-478 72-106 (265)
352 3bkx_A SAM-dependent methyltra 77.7 2.5 8.5E-05 40.3 5.2 83 441-530 42-133 (275)
353 1tte_A Ubiquitin-conjugating e 77.0 1.5 5.1E-05 42.9 3.4 28 89-116 170-197 (215)
354 1oqy_A HHR23A, UV excision rep 76.6 1.6 5.6E-05 45.9 3.8 39 88-128 168-206 (368)
355 1wj7_A Hypothetical protein (R 76.5 2.7 9.2E-05 37.0 4.6 37 17-55 40-77 (104)
356 2qsf_X RAD23, UV excision repa 76.4 2 6.7E-05 40.9 3.9 37 88-126 130-166 (171)
357 1x19_A CRTF-related protein; m 76.3 6 0.00021 39.8 7.8 81 440-532 188-269 (359)
358 1nt2_A Fibrillarin-like PRE-rR 75.9 4.6 0.00016 38.0 6.4 78 441-526 56-133 (210)
359 2wa2_A Non-structural protein 75.7 1.4 4.7E-05 44.0 2.8 35 440-478 80-114 (276)
360 3opn_A Putative hemolysin; str 75.5 1.6 5.4E-05 42.2 3.2 40 441-482 36-75 (232)
361 1tw3_A COMT, carminomycin 4-O- 74.1 8.6 0.00029 38.4 8.3 80 441-532 182-262 (360)
362 2kna_A Baculoviral IAP repeat- 72.8 4.5 0.00015 35.2 5.0 43 16-58 27-74 (104)
363 1i4w_A Mitochondrial replicati 72.2 4.3 0.00015 42.3 5.6 85 418-506 28-118 (353)
364 4fp9_B Mterf domain-containing 71.6 9.1 0.00031 39.6 7.9 87 17-114 47-139 (335)
365 1eg2_A Modification methylase 71.0 3 0.0001 42.5 4.0 43 442-487 242-287 (319)
366 1cuk_A RUVA protein; DNA repai 69.8 3.8 0.00013 39.6 4.3 36 89-124 161-197 (203)
367 3p2e_A 16S rRNA methylase; met 68.4 6.3 0.00021 37.5 5.5 64 442-506 24-91 (225)
368 3sso_A Methyltransferase; macr 68.0 4.6 0.00016 43.3 4.8 38 92-129 32-70 (419)
369 2p41_A Type II methyltransfera 67.2 1.9 6.6E-05 43.5 1.7 32 440-475 80-111 (305)
370 4e2x_A TCAB9; kijanose, tetron 66.2 9.1 0.00031 39.2 6.6 40 442-484 107-146 (416)
371 1wg8_A Predicted S-adenosylmet 65.1 13 0.00045 37.9 7.3 78 443-530 23-100 (285)
372 2ztd_A Holliday junction ATP-d 64.3 6.7 0.00023 38.3 4.8 38 89-126 165-205 (212)
373 2xyq_A Putative 2'-O-methyl tr 63.3 17 0.0006 36.6 7.8 65 441-529 62-133 (290)
374 2cp8_A NEXT to BRCA1 gene 1 pr 61.1 7.3 0.00025 30.5 3.5 37 90-128 11-48 (54)
375 2w84_A Peroxisomal membrane pr 59.8 9.7 0.00033 31.3 4.2 30 88-117 35-64 (70)
376 4auk_A Ribosomal RNA large sub 59.0 8.5 0.00029 40.7 4.8 74 440-531 209-282 (375)
377 4fp9_B Mterf domain-containing 56.6 32 0.0011 35.5 8.6 89 17-113 79-174 (335)
378 3lcv_B Sisomicin-gentamicin re 56.3 8.6 0.0003 39.2 4.1 49 441-490 131-179 (281)
379 3ua3_A Protein arginine N-meth 55.5 5.7 0.00019 45.4 2.9 89 434-527 398-503 (745)
380 2dpm_A M.dpnii 1, protein (ade 54.8 7.5 0.00026 39.0 3.4 47 434-485 26-73 (284)
381 2g1p_A DNA adenine methylase; 54.1 6.1 0.00021 39.5 2.6 48 433-485 18-65 (278)
382 3frh_A 16S rRNA methylase; met 53.8 15 0.00053 36.8 5.4 44 441-488 104-147 (253)
383 3dfg_A Xcrecx, regulatory prot 52.6 50 0.0017 30.2 8.4 73 16-113 34-109 (162)
384 2qsf_X RAD23, UV excision repa 51.3 14 0.00047 35.1 4.4 36 18-55 132-167 (171)
385 3cvo_A Methyltransferase-like 48.2 42 0.0014 32.2 7.3 58 443-505 31-92 (202)
386 4fs3_A Enoyl-[acyl-carrier-pro 46.7 26 0.00089 33.7 5.7 65 456-525 24-92 (256)
387 3m66_A Mterf3, mterf domain-co 46.4 60 0.0021 31.5 8.4 37 90-126 149-191 (270)
388 2kna_A Baculoviral IAP repeat- 46.3 23 0.0008 30.7 4.8 40 91-130 30-74 (104)
389 1yf3_A DNA adenine methylase; 46.2 6.7 0.00023 38.7 1.5 48 433-486 15-62 (259)
390 3ff5_A PEX14P, peroxisomal bio 45.6 17 0.00059 28.4 3.3 25 88-112 30-54 (54)
391 1ixr_A Holliday junction DNA h 43.9 4.8 0.00017 38.5 0.0 34 89-122 147-183 (191)
392 4gqb_A Protein arginine N-meth 43.7 24 0.00081 39.7 5.5 71 443-524 358-433 (637)
393 3mcz_A O-methyltransferase; ad 43.4 36 0.0012 33.8 6.3 83 442-533 179-262 (352)
394 2ip2_A Probable phenazine-spec 41.9 24 0.00081 34.8 4.7 78 444-533 169-247 (334)
395 2g72_A Phenylethanolamine N-me 41.7 13 0.00045 35.9 2.7 44 442-487 71-114 (289)
396 2qe6_A Uncharacterized protein 41.7 32 0.0011 33.6 5.6 85 444-532 79-170 (274)
397 2pwq_A Ubiquitin conjugating e 41.3 5.6 0.00019 38.8 0.0 28 89-116 178-205 (216)
398 3m66_A Mterf3, mterf domain-co 39.8 49 0.0017 32.2 6.5 88 16-114 5-102 (270)
399 2ztd_A Holliday junction ATP-d 39.4 36 0.0012 33.1 5.4 40 16-55 164-206 (212)
400 2k4m_A TR8_protein, UPF0146 pr 38.0 19 0.00066 33.6 3.1 42 437-481 30-73 (153)
401 3e3v_A Regulatory protein RECX 37.1 40 0.0014 31.4 5.2 78 18-115 88-166 (177)
402 3c6k_A Spermine synthase; sper 36.2 68 0.0023 33.9 7.2 83 443-531 206-296 (381)
403 4fn4_A Short chain dehydrogena 34.9 38 0.0013 33.3 4.8 63 457-525 24-90 (254)
404 3d5l_A Regulatory protein RECX 34.8 29 0.001 33.4 3.9 82 18-119 131-213 (221)
405 3dfg_A Xcrecx, regulatory prot 33.7 57 0.0019 29.9 5.5 73 18-112 86-159 (162)
406 2bm8_A Cephalosporin hydroxyla 33.4 24 0.00082 33.6 3.0 73 443-525 82-158 (236)
407 3t6p_A Baculoviral IAP repeat- 33.1 45 0.0015 34.6 5.2 42 17-58 120-166 (345)
408 3ged_A Short-chain dehydrogena 33.0 35 0.0012 33.4 4.2 59 457-525 19-81 (247)
409 1tte_A Ubiquitin-conjugating e 32.4 23 0.0008 34.3 2.8 30 15-44 168-197 (215)
410 2aot_A HMT, histamine N-methyl 32.1 91 0.0031 30.0 7.1 46 442-487 52-102 (292)
411 3mva_O Transcription terminati 31.9 34 0.0012 34.8 4.0 32 95-127 247-284 (343)
412 1xu9_A Corticosteroid 11-beta- 31.5 1.1E+02 0.0038 29.2 7.5 97 422-524 3-111 (286)
413 3gwz_A MMCR; methyltransferase 31.1 96 0.0033 31.3 7.3 81 441-533 201-282 (369)
414 3mva_O Transcription terminati 30.4 65 0.0022 32.7 5.8 87 16-114 19-112 (343)
415 4g81_D Putative hexonate dehyd 27.2 64 0.0022 31.6 5.0 64 457-526 26-93 (255)
416 4b79_A PA4098, probable short- 26.7 38 0.0013 33.2 3.2 57 457-525 28-84 (242)
417 3o4f_A Spermidine synthase; am 26.3 1.1E+02 0.0036 31.1 6.5 80 441-528 82-166 (294)
418 3dp7_A SAM-dependent methyltra 25.6 1.5E+02 0.0052 29.7 7.6 82 442-533 179-262 (363)
419 2dhy_A CUE domain-containing p 24.3 92 0.0031 25.1 4.5 40 16-58 18-60 (67)
420 2w84_A Peroxisomal membrane pr 23.4 95 0.0033 25.5 4.4 38 6-44 26-63 (70)
421 3oig_A Enoyl-[acyl-carrier-pro 23.2 1.2E+02 0.004 28.6 5.9 66 457-527 26-95 (266)
422 3d5l_A Regulatory protein RECX 23.1 1E+02 0.0035 29.6 5.5 72 16-112 78-153 (221)
423 3i53_A O-methyltransferase; CO 21.9 2.4E+02 0.0081 27.6 8.0 80 441-532 168-248 (332)
424 3c1d_A Protein ORAA, regulator 21.4 3.3E+02 0.011 24.5 8.2 24 91-114 84-108 (159)
425 3c1d_A Protein ORAA, regulator 20.6 1.3E+02 0.0045 27.2 5.4 72 19-112 85-157 (159)
426 4dbg_B Ring finger protein 31; 20.5 98 0.0033 29.2 4.4 32 98-129 27-65 (162)
No 1
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.93 E-value=7.5e-27 Score=236.52 Aligned_cols=105 Identities=17% Similarity=0.347 Sum_probs=93.2
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 523 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV 523 (576)
|+||||||||||+++||+++|| ++++|+|+|+.|++||+.+|. ..++.+||++++.+++ +++|||
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l 65 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI 65 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence 6899999999999999999998 569999999999999998753 2356899999998765 579999
Q ss_pred EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149 524 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 524 IGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
+||||||+||.+ |+++|++|+|+.||++|+|+|+++||..
T Consensus 66 ~ggpPCQ~fS~a------------g~~~g~~d~R~~L~~~~~r~i~~~~Pk~ 105 (331)
T 3ubt_Y 66 IGGPPSQSWSEG------------GSLRGIDDPRGKLFYEYIRILKQKKPIF 105 (331)
T ss_dssp ECCCCGGGTEET------------TEECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred EecCCCCCcCCC------------CCccCCCCchhHHHHHHHHHHhccCCeE
Confidence 999999999976 4567899999999999999999999853
No 2
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.92 E-value=3.4e-25 Score=226.17 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=101.6
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
..+.+++||||||||||+++||+++||++++|+++|+|+.|+++|+.+|. +..++.+||++++.+++.+ .+
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~----~~ 82 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQE----WG 82 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHH----TC
T ss_pred ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcc----cC
Confidence 35678999999999999999999999988779999999999999987653 4446789999999988764 36
Q ss_pred CccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149 519 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574 (576)
Q Consensus 519 ~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~ 574 (576)
++|||+||||||+||.+|+ +|.|++|+|+.||++|+|+|+++||.
T Consensus 83 ~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~ 127 (295)
T 2qrv_A 83 PFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK 127 (295)
T ss_dssp CCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred CcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence 8999999999999998753 45688999999999999999999985
No 3
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.90 E-value=4.4e-24 Score=221.07 Aligned_cols=110 Identities=14% Similarity=0.233 Sum_probs=97.2
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+++|+||||||||+++||+++|+..++|+++|+|+.|+++|+.||.. ..+..+||++++.+++.. .++||
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----~~~~~~DI~~~~~~~~~~-----~~~D~ 72 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----TNLLNRNIQQLTPQVIKK-----WNVDT 72 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----CceeccccccCCHHHhcc-----CCCCE
Confidence 57899999999999999999999888999999999999999987643 335679999999988764 37999
Q ss_pred EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh-cc
Q 008149 523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SM 574 (576)
Q Consensus 523 VIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK-~~ 574 (576)
|+||||||+||.+| ++.|++|+|+.||++|+|+|+++| |.
T Consensus 73 l~ggpPCQ~fS~ag------------~~~~~~d~r~~L~~~~~r~i~~~~~P~ 113 (333)
T 4h0n_A 73 ILMSPPCQPFTRNG------------KYLDDNDPRTNSFLYLIGILDQLDNVD 113 (333)
T ss_dssp EEECCCCCCSEETT------------EECCTTCTTSCCHHHHHHHGGGCTTCC
T ss_pred EEecCCCcchhhhh------------hccCCcCcccccHHHHHHHHHHhcCCC
Confidence 99999999999764 456789999999999999999997 74
No 4
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.90 E-value=3.3e-24 Score=221.60 Aligned_cols=117 Identities=18% Similarity=0.320 Sum_probs=98.1
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCceeeE-EEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149 435 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 435 vLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~v-vavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l 513 (576)
+|.++...+++||||||||||+++||+++||+++++ +++|+|+.|+++|+.||..+ ++.+||++++.+++..
T Consensus 2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~- 74 (327)
T 3qv2_A 2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIES- 74 (327)
T ss_dssp ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHH-
T ss_pred CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhcc-
Confidence 456677778999999999999999999999877889 99999999999999887432 5679999999988764
Q ss_pred hhccCCccEEEecCCCCCc--cccCCCCCCCCccccccCCCCCCCCcchHHHHHH-HHHHh--hcc
Q 008149 514 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSM 574 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPCQ~F--S~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvR-IV~~v--K~~ 574 (576)
.++|+|+||||||+| |.+ |+++|++|+|+.||++|+| +|+++ ||.
T Consensus 75 ----~~~Dil~ggpPCQ~fs~S~a------------g~~~~~~d~r~~L~~~~~r~~i~~~~~~P~ 124 (327)
T 3qv2_A 75 ----LNCNTWFMSPPCQPYNNSIM------------SKHKDINDPRAKSVLHLYRDILPYLINKPK 124 (327)
T ss_dssp ----TCCCEEEECCCCTTCSHHHH------------TTTCTTTCGGGHHHHHHHHTTGGGCSSCCS
T ss_pred ----CCCCEEEecCCccCcccccC------------CCCCCCccccchhHHHHHHHHHHHhccCCC
Confidence 279999999999999 755 4567889999999999999 99998 664
No 5
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.89 E-value=5.4e-24 Score=230.48 Aligned_cols=125 Identities=17% Similarity=0.262 Sum_probs=88.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh--------H-HHh
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK--------F-ESL 513 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~--------I-e~l 513 (576)
.++||||||||||+++||+++|+ ++|+++|+|+.|+++|+.||.. .++..++.+||++++... + ..+
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence 58999999999999999999998 5799999999999999988732 234456679999987432 1 111
Q ss_pred hhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 008149 514 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~-D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
....+++|||+||||||+||.+|+..+. -.|.+.|+. |+|+.||++|+|+|+.+||.+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~----~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~ 222 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFACDTQGTLFFDVVRIIDARRPAM 222 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred hhcCCCCCEEEecCCCcchhhhCccccc----ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence 2345789999999999999999854211 013345775 899999999999999999853
No 6
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.88 E-value=2.8e-23 Score=218.13 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=92.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
.++||||||||||+++||+++|+ ++|++||+|+.|+++|+.||. ...++.+||++++.+++.......+++||
T Consensus 2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 48999999999999999999998 569999999999999998754 34467899999998887543223468999
Q ss_pred EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149 523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 523 VIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
|+||||||+||.+|+ | |.+|+|+.||++|+|+|+++||.+
T Consensus 75 i~ggpPCQ~fS~ag~------------~-~~~d~r~~L~~~~~~~v~~~~P~~ 114 (376)
T 3g7u_A 75 IIGGPPCQGFSSIGK------------G-NPDDSRNQLYMHFYRLVSELQPLF 114 (376)
T ss_dssp EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred EEecCCCCCcccccC------------C-CCCCchHHHHHHHHHHHHHhCCCE
Confidence 999999999998743 3 678999999999999999999863
No 7
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.88 E-value=6.5e-23 Score=211.60 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=92.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+++||||||||||+++||+++|+ ++|+++|+|+.|+++|+.+|... . .+||++++.+.+ +++|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D 73 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD 73 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence 458999999999999999999998 56999999999999999987533 1 689999987654 4799
Q ss_pred EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149 522 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574 (576)
Q Consensus 522 LVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~ 574 (576)
||+||||||+||.+| ++.|++|+|+.||++|+|+|+++||.
T Consensus 74 ~l~~gpPCQ~fS~ag------------~~~g~~d~r~~L~~~~~r~i~~~~P~ 114 (327)
T 2c7p_A 74 ILCAGFPCQAFSISG------------KQKGFEDSRGTLFFDIARIVREKKPK 114 (327)
T ss_dssp EEEEECCCTTTCTTS------------CCCGGGSTTSCHHHHHHHHHHHHCCS
T ss_pred EEEECCCCCCcchhc------------ccCCCcchhhHHHHHHHHHHHhccCc
Confidence 999999999999764 45678899999999999999999985
No 8
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.87 E-value=2.5e-23 Score=234.65 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=95.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES---- 512 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi----~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~---- 512 (576)
...+||||||||||||++||+++|. .+++++|||+|+.|++||+.|| +.+.+.+.||.++....++.
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~~~~~~~di~~i~~~~~~~~~~~ 284 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQTEVRNEKADEFLALLKEWAVLC 284 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TTSEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CCCceecCcHHHhhhhhhhccccc
Confidence 3569999999999999999999982 2478999999999999998764 44556778887664432221
Q ss_pred --------------------------------------------------------------------------------
Q 008149 513 -------------------------------------------------------------------------------- 512 (576)
Q Consensus 513 -------------------------------------------------------------------------------- 512 (576)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~ 364 (784)
T 4ft4_B 285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364 (784)
T ss_dssp HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence
Q ss_pred --------hhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149 513 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 513 --------l~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
.....|++|||+||||||+||.+|+.. |...+++|+|+.||++|+|+|+++||..
T Consensus 365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~ 427 (784)
T 4ft4_B 365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY 427 (784)
T ss_dssp HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence 011236899999999999999987652 2345688999999999999999999853
No 9
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.87 E-value=6.9e-23 Score=212.00 Aligned_cols=110 Identities=16% Similarity=0.327 Sum_probs=80.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+++||||||||||+++||+++|+++++|+++|+|+.|+++|+.+|.. ..++.+||++++.+.+.. ..+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----~~~~~~Di~~~~~~~~~~-----~~~D~ 71 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----TQLLAKTIEGITLEEFDR-----LSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----cccccCCHHHccHhHcCc-----CCcCE
Confidence 47899999999999999999998778999999999999999987643 235679999999877653 26999
Q ss_pred EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh--cc
Q 008149 523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SM 574 (576)
Q Consensus 523 VIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK--~~ 574 (576)
|+||||||+||.+| ++.|++|+|+.||++|+|+|++++ |.
T Consensus 72 l~~gpPCq~fS~ag------------~~~g~~d~r~~l~~~~~~~i~~~~~~P~ 113 (343)
T 1g55_A 72 ILMSPPCQPFTRIG------------RQGDMTDSRTNSFLHILDILPRLQKLPK 113 (343)
T ss_dssp EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred EEEcCCCcchhhcC------------CcCCccCccchHHHHHHHHHHHhcCCCC
Confidence 99999999999764 456789999999999999999998 64
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.85 E-value=3.2e-22 Score=212.38 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=89.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceee----EEEeeCCHHHHHHHHHHhhhcCCC---------------C-Cc------
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------G-EL------ 496 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~----vvavEid~~a~~t~k~~~~~tn~~---------------g-~l------ 496 (576)
.++|+||||||||+++||+++|+++++ |++||+|+.|+++|+++|...... + ..
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i 89 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGI 89 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHH
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhcccccccccccccc
Confidence 589999999999999999999976666 999999999999999998643100 0 00
Q ss_pred -------------------cccccccccChhhHHHhhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCC--
Q 008149 497 -------------------VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD-- 555 (576)
Q Consensus 497 -------------------~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D-- 555 (576)
...+||++++.++++ +.+|||+||||||+||.+| +|.|++|
T Consensus 90 ~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag------------~~~g~~d~~ 151 (403)
T 4dkj_A 90 KKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQG------------LQKGIDKEL 151 (403)
T ss_dssp HHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTS------------CCCCCCGGG
T ss_pred ccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhC------------CCCCCCccc
Confidence 024888888876653 3589999999999999764 4567776
Q ss_pred -CCcchHHHHHHHHHH
Q 008149 556 -FDFSLYYEFVRVVQR 570 (576)
Q Consensus 556 -~Rs~Lf~EyvRIV~~ 570 (576)
+|+.||++|+|+|++
T Consensus 152 ~~r~~L~~~~~rii~~ 167 (403)
T 4dkj_A 152 NTRSGLLWEIERILEE 167 (403)
T ss_dssp CCSGGGHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHH
Confidence 999999999999998
No 11
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.79 E-value=3.8e-20 Score=214.64 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=92.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh----HHHhh--
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK----FESLI-- 514 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~----Ie~l~-- 514 (576)
...+++|||||||||+++||++|||. ++++|+|+|+.|+.+|+.|| ++..++.+||.++.... +....
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence 45799999999999999999999982 57999999999999998765 34456678887764221 11110
Q ss_pred --hccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149 515 --HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 515 --~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
...+++|||+||||||+||.+|+. +..+..|+|+.||++|+|+|++++|..
T Consensus 612 ~lp~~~~vDll~GGpPCQ~FS~ag~~----------~~~~~~d~R~~L~~~~~riv~~~rPk~ 664 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGFSGMNRF----------NSRTYSKFKNSLVVSFLSYCDYYRPRF 664 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTCCSSSCC----------CHHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred hcccCCCeeEEEEcCCCcchhhhCCC----------CCCcccchhhHHHHHHHHHHHHhCCCE
Confidence 112589999999999999988753 112356899999999999999999853
No 12
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.78 E-value=4.8e-20 Score=218.39 Aligned_cols=118 Identities=21% Similarity=0.278 Sum_probs=91.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhH----HH----h
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF----ES----L 513 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~I----e~----l 513 (576)
..+++|||||||||+++||++||+ .++++|+|+|+.|+++|+.+|. +..++.+||.++....+ .. .
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 468999999999999999999998 3679999999999999988653 33455677776542211 00 0
Q ss_pred hhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149 514 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 575 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~ 575 (576)
+...+++|||+||||||+||.+|+. +..+.+|+|+.||++|+|+|+++||..
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~agr~----------~~~~~~d~R~~L~~~~lriv~~~rPk~ 975 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMNRF----------NSRTYSKFKNSLVVSFLSYCDYYRPRF 975 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSSCC----------CHHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred ccccCccceEEecCCCccccccccc----------ccccccchhhHHHHHHHHHHHHhcCcE
Confidence 0112579999999999999988753 112356899999999999999999853
No 13
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.77 E-value=1.4e-19 Score=179.45 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=70.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+++|||||||||| ||+++||++ + .|+++..++.+||++|+.++|++ ++++|
T Consensus 32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D 83 (230)
T 2qrv_B 32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD 83 (230)
T ss_dssp CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence 46899999999998 899999963 1 23455556789999999988764 47899
Q ss_pred EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149 522 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574 (576)
Q Consensus 522 LVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~ 574 (576)
||+||||||+||.+ ++|++||+||+|||+++||.
T Consensus 84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk 117 (230)
T 2qrv_B 84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 117 (230)
T ss_dssp EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence 99999999999965 35889999999999999985
No 14
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.73 E-value=1.7e-18 Score=182.30 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=73.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
..+++|||||||||| ||++|||++ ..|+++..++.+||++|+.++|++ ++++
T Consensus 187 ~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~~ 238 (386)
T 2pv0_B 187 RQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGPF 238 (386)
T ss_dssp CCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCCC
T ss_pred hcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCCC
Confidence 456999999999997 999999964 135666666789999999988764 4789
Q ss_pred cEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149 521 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574 (576)
Q Consensus 521 DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~ 574 (576)
|||+||||||+||.+ |+|++||+||+|||+++||.
T Consensus 239 DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk 273 (386)
T 2pv0_B 239 DLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 273 (386)
T ss_dssp SEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred CEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence 999999999999964 36899999999999999985
No 15
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=150.92 Aligned_cols=160 Identities=20% Similarity=0.313 Sum_probs=117.6
Q ss_pred CC-ccccccccccchhhhHhhhhhhccCCceeecccccCcccccccccccCCCCCCCCCCC-CCCCcccccccCCCccCC
Q 008149 249 PP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWWP 326 (576)
Q Consensus 249 pp-fF~~eNV~~~~~~~w~~Is~fL~~i~Pe~vds~~fsaa~R~R~y~hNLP~~nR~~~~p-~~p~ti~d~lp~~~~~wp 326 (576)
+| ||++|||..+-...+.+|.++|. ..+.++||..|.||+|+|.||.++|...++...+ .+.+|++|+|...+.+
T Consensus 132 ~P~~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~~-- 208 (295)
T 2qrv_A 132 RPFFWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIA-- 208 (295)
T ss_dssp CCCEEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCEE--
T ss_pred CccEEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCccc--
Confidence 44 78999999998887888999996 5999999999999999999999999876522111 1368999999865432
Q ss_pred CcCcCcccceeeccCcchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCc
Q 008149 327 SWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHT 406 (576)
Q Consensus 327 ~wd~r~klnci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T 406 (576)
...++++|++.+..+. ..++ +.+.. ..+++.+.|++.|+.||+|||++|+
T Consensus 209 ---~~~~~~~i~~~~~~~~-----------~g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~~ 258 (295)
T 2qrv_A 209 ---KFSKVRTITTRSNSIK-----------QGKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHYT 258 (295)
T ss_dssp ---SSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTTT
T ss_pred ---ccCccccccCCCceec-----------CCCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHHe
Confidence 2344555554321110 0000 01111 2356789999999999999999999
Q ss_pred ccCCCChHHHHHHhhhhhccccchhhhccccccCC
Q 008149 407 QAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFP 441 (576)
Q Consensus 407 ~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~ 441 (576)
-.++++.++++|.+||+..++.+.++...|++++.
T Consensus 259 ~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~ 293 (295)
T 2qrv_A 259 DVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA 293 (295)
T ss_dssp CCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred eCCCcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence 98889999999999999999999999988887663
No 16
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.48 E-value=7.3e-15 Score=152.15 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=114.0
Q ss_pred CCCccccccccccch-hhhHhhhhhh----ccCCceeeccccc-Cccccccccc----ccCCCC--------CCCCCCCC
Q 008149 248 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE 309 (576)
Q Consensus 248 ~ppfF~~eNV~~~~~-~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~----hNLP~~--------nR~~~~p~ 309 (576)
+|.||++|||..+-. ..|..|.+.| |.++..++||..| .||+|+|.|+ ..++.. ..+|..+.
T Consensus 111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~ 190 (333)
T 4h0n_A 111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG 190 (333)
T ss_dssp TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence 399999999998864 3577777777 7788999999999 9999999997 222221 11122222
Q ss_pred CCCcccccccC-----------CCccCCCcCcCcc--cc--eeeccCc------ch------hHHHHHHHHHHhhccCCC
Q 008149 310 PPMTIQDAIPH-----------TKKWWPSWDTRKH--LS--CINSGTS------GI------SQLCERFEKLLRDSRGVL 362 (576)
Q Consensus 310 ~p~ti~d~lp~-----------~~~~wp~wd~r~k--ln--ci~t~~~------~~------~~l~~~i~~~~~~~~~~~ 362 (576)
.+.+|.|+|+. +.+||..+|-.+. .+ |.+..+. ++ ....+++-+.+....+
T Consensus 191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-- 268 (333)
T 4h0n_A 191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-- 268 (333)
T ss_dssp SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT--
T ss_pred ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC--
Confidence 36889999952 1145555553221 11 1111110 00 0011122221111100
Q ss_pred chhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcccc
Q 008149 363 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 437 (576)
Q Consensus 363 ~~~~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK 437 (576)
..+.| +.+..+.++++|+|.|++||+|||++||-..++|.++|||.+||+..|++++++.+.|.
T Consensus 269 G~~~~-----------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~ 332 (333)
T 4h0n_A 269 GGEKF-----------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF 332 (333)
T ss_dssp TCHHH-----------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred Ccccc-----------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 01111 12234678999999999999999999998778999999999999999999999987763
No 17
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.41 E-value=2.1e-14 Score=148.48 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=118.2
Q ss_pred CCCccccccccccch-hhhHhhhhhh----ccCCceeeccccc-Cccccccccc-ccCCCCCCCCCC--CCCCCcccccc
Q 008149 248 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI 318 (576)
Q Consensus 248 ~ppfF~~eNV~~~~~-~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~-hNLP~~nR~~~~--p~~p~ti~d~l 318 (576)
+|.||++|||..+-. ..|..|.+.| |.++..++||..| .||+|+|.|+ +.... -.+|-. +.+..+|+|+|
T Consensus 122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~-f~fP~~~~~~~~~~l~d~L 200 (327)
T 3qv2_A 122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP-FKNEIQLHQEKESMISNYL 200 (327)
T ss_dssp CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC-CCSCCCCCCCSCCCGGGGC
T ss_pred CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC-CCCCCcccccccccHHHHh
Confidence 799999999998765 4677777777 6788999999999 9999999994 44333 122221 11358899999
Q ss_pred cC--------CCccCCCcCcC--------cccceeeccCcchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeee
Q 008149 319 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV 382 (576)
Q Consensus 319 p~--------~~~~wp~wd~r--------~klnci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~ 382 (576)
+. ..+||..|... ++-.|+|..+ ++. ....++.+.... -......++++.
T Consensus 201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y---~~y-------~~~~gs~l~~~~----~~~~~~~~~~~~ 266 (327)
T 3qv2_A 201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSY---TKI-------VEGTGSIYCPIE----PHFIPVKKAEDL 266 (327)
T ss_dssp CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTT---TTS-------STTSCCEEESSC----SSCCCCSSGGGG
T ss_pred cccccccccCCHHHHHhhhcccccccccccccccccccc---eEE-------ecCCCceeeccc----ccccccCCceee
Confidence 72 22344333211 1112222211 000 001111110000 000112356677
Q ss_pred cccccCCCChhhHHHHhcCCCCCccc-CCCChHHHHHHhhhhhccccchhhhccccccC
Q 008149 383 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 440 (576)
Q Consensus 383 g~~~~~ple~~E~E~i~GfP~~~T~~-~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f 440 (576)
.+++++.|+|.|+.||+|||++|+-. .++|.+++||.+|||..++++.++...|++..
T Consensus 267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l 325 (327)
T 3qv2_A 267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL 325 (327)
T ss_dssp TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999976 67999999999999999999999988887653
No 18
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.17 E-value=1.2e-11 Score=111.49 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=75.8
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHHHHH
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLL 96 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~~L~ 96 (576)
.+...+|++||||.+.|.||++.+|. + +++++|+|++++.+...+.++.+.+..... .+. +...--..-+++..|.
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~-~-~e~amewL~~h~~L~d~~~d~~~~e~~l~~-~~~-~~~~~~~~~~~v~~L~ 84 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGA-N-IEQILDYLFAHGQLCEKGFDPLLVEEALEM-HQC-SEEKMMEFLQLMSKFK 84 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCS-C-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-CSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCc-C-HHHHHHHHHHhchhcccCCChhhhHHHHHh-ccC-CccccccCHHHHHHHH
Confidence 45678999999999999999999998 7 999999999998886654322110000000 000 0000111234688999
Q ss_pred hcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 97 EMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 97 ~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.|||++++|..|+.+++.| ++-=+|.+++..
T Consensus 85 eMGF~~~~a~~AL~~~~nd--~erAlewL~~~~ 115 (118)
T 4ae4_A 85 EMGFELKDIKEVLLLHNND--QDNALEDLMARA 115 (118)
T ss_dssp HTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHcCCC--HHHHHHHHHHhc
Confidence 9999999999999999987 666777777654
No 19
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=98.94 E-value=9e-11 Score=118.67 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=101.5
Q ss_pred cCCCCccccccccccch----hhhHhhhhhh----ccCCceeeccccc-Cccccccccc----ccCCCCCCCCCCCCCCC
Q 008149 246 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM 312 (576)
Q Consensus 246 ~~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~----hNLP~~nR~~~~p~~p~ 312 (576)
..+|.||++|||..+-. ..+..|.+.| |.+.+.++||.+| .||+|+|.|+ .+++..--+|.......
T Consensus 100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~ 179 (331)
T 3ubt_Y 100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP 179 (331)
T ss_dssp HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence 35899999999987743 3566666666 6799999999999 9999999997 33333322222112356
Q ss_pred cccccccCCC-ccCCCcCcCcc--cceeecc----Cc--chhHHH-HHHHHH------HhhccCCCc-hhhhHHHHHhhc
Q 008149 313 TIQDAIPHTK-KWWPSWDTRKH--LSCINSG----TS--GISQLC-ERFEKL------LRDSRGVLS-SQQQRDILHRSE 375 (576)
Q Consensus 313 ti~d~lp~~~-~~wp~wd~r~k--lnci~t~----~~--~~~~l~-~~i~~~------~~~~~~~~~-~~~q~~vl~~c~ 375 (576)
|+.|++.... .-+|.+++... ..++... .. ...... .+.+.. +...+.... ......+...++
T Consensus 180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (331)
T 3ubt_Y 180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK 259 (331)
T ss_dssp CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence 7777762110 01111111000 0000000 00 000000 000000 000000000 000000000011
Q ss_pred ccceee-ecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccc
Q 008149 376 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 438 (576)
Q Consensus 376 k~nlvW-~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~ 438 (576)
..+-.+ ..++..+.||+.|+.||+|||++|+= .+.+.++++|.+||+..+....++...++.
T Consensus 260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f-~~~s~~~~ykqiGNAVpp~la~~I~~~I~~ 322 (331)
T 3ubt_Y 260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS 322 (331)
T ss_dssp TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEe-CCCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence 111111 13456799999999999999999973 245899999999999998887777665543
No 20
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=98.92 E-value=2.6e-10 Score=121.23 Aligned_cols=185 Identities=13% Similarity=0.153 Sum_probs=111.1
Q ss_pred CCCCccccccccccchh----hhHhhhhhh----ccCCceeeccccc-Ccccccccccc------cCCCCCCC---CCCC
Q 008149 247 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIPP 308 (576)
Q Consensus 247 ~~ppfF~~eNV~~~~~~----~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~h------NLP~~nR~---~~~p 308 (576)
.+|.||++|||..+-.. .|..|.+.| |.+.+.++||..| .||+|.|.|+= ..|..... .++.
T Consensus 176 ~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~~ 255 (403)
T 4dkj_A 176 EMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVK 255 (403)
T ss_dssp GSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGCC
T ss_pred cCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCccccccccccc
Confidence 68999999999998653 466676666 6689999999999 99999999962 12221111 1111
Q ss_pred CCCCcccccccCC--CccC-------CCc-CcCcccceeec-cCcchhHHHHHHHHHHhhccC-CCchhhhHHHHHhhcc
Q 008149 309 EPPMTIQDAIPHT--KKWW-------PSW-DTRKHLSCINS-GTSGISQLCERFEKLLRDSRG-VLSSQQQRDILHRSEK 376 (576)
Q Consensus 309 ~~p~ti~d~lp~~--~~~w-------p~w-d~r~klnci~t-~~~~~~~l~~~i~~~~~~~~~-~~~~~~q~~vl~~c~k 376 (576)
.++.+|.|+|+.. .+|- |.. .++.++.+..+ ......+ + +++.. ..+ .++... .+..
T Consensus 256 ~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~-~~~~~~Tlt~------~~~~ 324 (403)
T 4dkj_A 256 NPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNS--E--NYVYN-INGIGPTLTA------SGAN 324 (403)
T ss_dssp CCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGG--G--SEEEE-TTSBBCCCCS------SSGG
T ss_pred cccccHHHHhccccccccchhhhhccccccccccchhcccccccccccc--C--cceec-CCCcccceec------CCCC
Confidence 2367999999743 1211 110 01111111100 0000000 0 00000 000 000000 0111
Q ss_pred cceeeecccccCCCChhhHHHHhcCCC-CCcccC--C-CChHHHHHHhhhhhccccchhhhccccccCCC
Q 008149 377 LNLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPG 442 (576)
Q Consensus 377 ~nlvW~g~~~~~ple~~E~E~i~GfP~-~~T~~~--~-~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~~ 442 (576)
.-++....++++.|+|.|+.||+|||+ +|.... + ++.+++||.+|||..|+++.+++.-|+..+..
T Consensus 325 ~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~ 394 (403)
T 4dkj_A 325 SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE 394 (403)
T ss_dssp GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence 222233557899999999999999999 677653 3 79999999999999999999999888877654
No 21
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=98.83 E-value=2.6e-09 Score=110.19 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=103.8
Q ss_pred CCCCccccccccccch----hhhHhhhhhh----ccCCceeeccccc-CcccccccccccCCC-CCC-CCCCCC---CCC
Q 008149 247 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLPT-TNR-FHIPPE---PPM 312 (576)
Q Consensus 247 ~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~hNLP~-~nR-~~~~p~---~p~ 312 (576)
.+|.||++|||..+-. ..|..|.+.| |.+...++||..| .||+|+|.|+=..-. .+. ....|. ...
T Consensus 111 ~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~~ 190 (327)
T 2c7p_A 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNT 190 (327)
T ss_dssp HCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCCC
T ss_pred ccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCCC
Confidence 4899999999998854 3566676666 6788999999999 999999999843211 110 011233 257
Q ss_pred cccccccCC---CccCCC-----cCcCcccceeeccCcchhHHHHHHHHHH--hhc-cCCCchhhhHHHHHh----hcc-
Q 008149 313 TIQDAIPHT---KKWWPS-----WDTRKHLSCINSGTSGISQLCERFEKLL--RDS-RGVLSSQQQRDILHR----SEK- 376 (576)
Q Consensus 313 ti~d~lp~~---~~~wp~-----wd~r~klnci~t~~~~~~~l~~~i~~~~--~~~-~~~~~~~~q~~vl~~----c~k- 376 (576)
|+.|+|... .+|..+ |.-..+... ........+.. .+.. .+. -+.+... |... +.+
T Consensus 191 tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~T----i~~~~~~~~~~~ 262 (327)
T 2c7p_A 191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQT--TPKTVRLGIVG--KGGQGERIYSTRGIAIT----LSAYGGGIFAKT 262 (327)
T ss_dssp CGGGTCCCGGGTGGGEECCTTCEECSCCCSSC--CSSCCEEEEST--TCCTTCEEEETTSCBCC----CCSSCCSTTTTT
T ss_pred cHHHHhcccCCcccccccCCcceeEeeccccC--ccchhhhhhcc--CCccccccccCCCCcCc----eecCCCCccCCC
Confidence 899998421 111101 000000000 00000000000 0000 000 0000000 0000 111
Q ss_pred cceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcccccc
Q 008149 377 LNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM 439 (576)
Q Consensus 377 ~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~ 439 (576)
.+.+. +.+.+.|++.|+.||+|||++|+- ..+.++++|.+||+..+....++...|+..
T Consensus 263 ~~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~ 321 (327)
T 2c7p_A 263 GGYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGSS 321 (327)
T ss_dssp CEEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHHH
Confidence 12222 677899999999999999999984 589999999999999999888776666543
No 22
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=98.83 E-value=3.4e-09 Score=115.06 Aligned_cols=177 Identities=13% Similarity=0.239 Sum_probs=104.6
Q ss_pred cCCCCccccccccccch----hhhHhhhhhh----ccCC---------ceeecccccCccccccccc----ccCCCCCCC
Q 008149 246 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF 304 (576)
Q Consensus 246 ~~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~---------Pe~vds~~fsaa~R~R~y~----hNLP~~nR~ 304 (576)
..+|.||++|||..+-. ..|..|.+.| |.|. +.++||.+|.||+|+|.|+ .+++....|
T Consensus 217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F 296 (482)
T 3me5_A 217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF 296 (482)
T ss_dssp HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence 35899999999998854 3566666666 4443 7799999999999999997 234332222
Q ss_pred C------CCCCCCCcccccccCCCccCCCcCcCcccceeeccCcchhHHHHHHHHHH----hhccCC----CchhhhHHH
Q 008149 305 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLL----RDSRGV----LSSQQQRDI 370 (576)
Q Consensus 305 ~------~~p~~p~ti~d~lp~~~~~wp~wd~r~klnci~t~~~~~~~l~~~i~~~~----~~~~~~----~~~~~q~~v 370 (576)
. ..|.++.||.|+|.... + .|. ..+ .++-+.+.+.- .+.+++ ...+...
T Consensus 297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~-- 359 (482)
T 3me5_A 297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQ-- 359 (482)
T ss_dssp CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGG--
T ss_pred CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccc--
Confidence 2 23555678999996321 0 000 000 01111111100 000010 0000000
Q ss_pred HHhhcc---------ccee----e-------------ecccccCCCChhhHHHHhcCCCCCcc--cCCCChHHHHHHhhh
Q 008149 371 LHRSEK---------LNLV----W-------------VGAYKLGPVDPEHIELILGYPSNHTQ--AAGNSLTARLESLRH 422 (576)
Q Consensus 371 l~~c~k---------~nlv----W-------------~g~~~~~ple~~E~E~i~GfP~~~T~--~~~~~~teR~k~Lg~ 422 (576)
..|+. .+++ | ...++++.|||.|++||+|||...++ .+.++.+++||.+||
T Consensus 360 -~~~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GN 438 (482)
T 3me5_A 360 -SVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGN 438 (482)
T ss_dssp -GGTCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHT
T ss_pred -ccceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCC
Confidence 00100 0111 1 01357899999999999999953322 247899999999999
Q ss_pred hhccccchhhhccccccC
Q 008149 423 CFQTDTLGYHLSVLKSMF 440 (576)
Q Consensus 423 sf~vdtv~~~lsvLK~~f 440 (576)
+..++++..+...|+.++
T Consensus 439 sV~v~v~~~i~~~l~~~l 456 (482)
T 3me5_A 439 SVVVPVFAAVAKLLEPKI 456 (482)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHH
Confidence 999999999887776644
No 23
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=98.73 E-value=1.1e-08 Score=105.69 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=47.5
Q ss_pred cccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccc
Q 008149 383 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 436 (576)
Q Consensus 383 g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvL 436 (576)
.+.+.+.|++.|+.||+|||++|+=.++++.+++||.+||+..++.+..++..|
T Consensus 288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l 341 (343)
T 1g55_A 288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 341 (343)
T ss_dssp HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence 466789999999999999999999655689999999999999999888776544
No 24
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=98.64 E-value=4.9e-09 Score=104.07 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=47.3
Q ss_pred ccccCCCC-ccccccccccchhhhHhhhhhhccCCceeecccccCcccccccccccCCCCCC
Q 008149 243 NKVVAQPP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR 303 (576)
Q Consensus 243 ~~~~~~pp-fF~~eNV~~~~~~~w~~Is~fL~~i~Pe~vds~~fsaa~R~R~y~hNLP~~nR 303 (576)
|+...++| ||++|||..|.......|.+||. +.+.+|||.+|.+++|+|.||+|+|..++
T Consensus 116 Pk~~~~~P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~ 176 (230)
T 2qrv_B 116 PKPGSPRPFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS 176 (230)
T ss_dssp CCSSCCSCCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred cCcccCCCcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence 33333344 67899999998888899999994 89999999999999999999999998865
No 25
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.52 E-value=6.3e-07 Score=80.77 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=71.8
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCC-CCC---CchhhhhhhhHHHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGT-NED---KSDETLYGTMEITL 93 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~-ne~---~~~e~~~~~~~k~~ 93 (576)
+...+|++||||.+.+.+|+...|..+ ++.-+++|+..+.-......-.-........ .++ +....+.-..+++.
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~v~ 83 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGNMG-AEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVA 83 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTSCC-HHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHHHH
Confidence 467899999999999999999999877 9999999998754221100000000000000 000 00001111345778
Q ss_pred HHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 94 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 94 ~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.|+.|||++++|..|+..+|.+ ++.=++.++...
T Consensus 84 ~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~~ 117 (126)
T 2lbc_A 84 IITSMGFQRNQAIQALRATNNN--LERALDWIFSHP 117 (126)
T ss_dssp HHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTCC
T ss_pred HHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 9999999999999999999874 777788887644
No 26
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=98.32 E-value=5.1e-07 Score=102.07 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=44.9
Q ss_pred cccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhh
Q 008149 375 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH 432 (576)
Q Consensus 375 ~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~ 432 (576)
...+..|+-+.+.+.|||.|+.||||||++|+= ..+.+++||.+||+.-+.....+
T Consensus 678 ~~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f--~Gs~~~~ykQIGNAVpp~lA~aI 733 (784)
T 4ft4_B 678 EPHNQVIIHPTQARVLTIRENARLQGFPDYYRL--FGPIKEKYIQVGNAVAVPVARAL 733 (784)
T ss_dssp CSSSSEEECSSSSSBCCHHHHHHHTTCCTTCCC--CSCHHHHHHHHHHSCCHHHHHHH
T ss_pred cCCCCeecCCCCCcCCcHHHHHHHCCCCCCCEe--CCCHHHHHhhccCCCCHHHHHHH
Confidence 334445566778899999999999999999984 55999999999999877655444
No 27
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=98.14 E-value=9.2e-07 Score=92.91 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=41.8
Q ss_pred ccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccc
Q 008149 384 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 438 (576)
Q Consensus 384 ~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~ 438 (576)
+.+-++|++-|+-||||||++|.= ..+.++.+|.+||+.-+.....+-..++.
T Consensus 313 P~~~R~lTvRE~ARlQsFPD~f~f--~g~~~~~~~qIGNAVPp~la~aia~~I~~ 365 (376)
T 3g7u_A 313 PYHPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIVAEYILKGLYN 365 (376)
T ss_dssp SSSSSBCCHHHHHHHHTCCTTCCC--CSSHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CccCcCCCHHHHHHhCCCCcceEE--CCChHHhheeeecCCCHHHHHHHHHHHHH
Confidence 456799999999999999999974 56889999999999877655444444443
No 28
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.81 E-value=4.9e-05 Score=79.20 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=63.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-C-CCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~-g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+|||||||+|++++.+.+.|. ..|+++|+++.+.+..+.+...++. . ...++.+|+.++.. .+....+.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~ 293 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK 293 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence 467899999999999999999885 4589999999999999888754432 2 22345567655421 11112257
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
||+|+..||+...|
T Consensus 294 fD~Ii~dpP~~~~~ 307 (396)
T 3c0k_A 294 FDVIVMDPPKFVEN 307 (396)
T ss_dssp EEEEEECCSSTTTC
T ss_pred CCEEEECCCCCCCC
Confidence 99999999987765
No 29
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.77 E-value=6e-05 Score=77.53 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=62.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||||||.|++++.+.+.|. .|++||+++.+.+..+.+....+... ..++.+|+.++... +....+.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~~~~~ 225 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EERRGST 225 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHHHTCC
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHhcCCC
Confidence 357899999999999999999986 37899999999999988775443222 23456777654221 1111357
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
||+|+..|||.+.+
T Consensus 226 fD~Ii~dPP~~~~~ 239 (332)
T 2igt_A 226 YDIILTDPPKFGRG 239 (332)
T ss_dssp BSEEEECCCSEEEC
T ss_pred ceEEEECCccccCC
Confidence 99999999997665
No 30
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=97.70 E-value=2e-05 Score=83.39 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCccccccccccchhhhHhhhhhhccCCceeecccccCcccccccccccCCCCCCC
Q 008149 249 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRF 304 (576)
Q Consensus 249 ppfF~~eNV~~~~~~~w~~Is~fL~~i~Pe~vds~~fsaa~R~R~y~hNLP~~nR~ 304 (576)
|.||++|||..|..+...+|.+||. +++.+|||.+|.+++|+|-||+|+|+.++.
T Consensus 279 P~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~ 333 (386)
T 2pv0_B 279 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSR 333 (386)
T ss_dssp CCEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTT
T ss_pred CcEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCc
Confidence 3378999999998888889999995 899999999997766666699999999873
No 31
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.68 E-value=4.7e-05 Score=77.13 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=62.3
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhc
Q 008149 438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+++..+-+|||+|||+|++++.+.+.|- .-|+++|+|+.+.+.++.+-..++-.+. .++.+|.+++..
T Consensus 121 ~~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------- 189 (278)
T 3k6r_A 121 KVAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------- 189 (278)
T ss_dssp HHCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------
T ss_pred HhcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------
Confidence 3345678999999999999998888775 2488999999999999987654433222 245678776643
Q ss_pred cCCccEEEecCCCCC
Q 008149 517 LGSIDFVICQNSVPQ 531 (576)
Q Consensus 517 ~g~~DLVIGGpPCQ~ 531 (576)
.+.+|.|+-++|+-.
T Consensus 190 ~~~~D~Vi~~~p~~~ 204 (278)
T 3k6r_A 190 ENIADRILMGYVVRT 204 (278)
T ss_dssp CSCEEEEEECCCSSG
T ss_pred ccCCCEEEECCCCcH
Confidence 257999999999754
No 32
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.63 E-value=0.00014 Score=67.49 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||++||.|++...+.+.|.. .|+++|+++.+.+..+.+....+. ...+..+|+.++. +.+|
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D 114 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD 114 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence 4578999999999999999998863 588999999999888876654322 2234567777653 3699
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+..||+...+
T Consensus 115 ~v~~~~p~~~~~ 126 (207)
T 1wy7_A 115 IVIMNPPFGSQR 126 (207)
T ss_dssp EEEECCCCSSSS
T ss_pred EEEEcCCCcccc
Confidence 999999976654
No 33
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.56 E-value=0.00011 Score=72.93 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=62.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
...+-+|||+|||.|++++.+.+.|.. .|+++|+++.+.+..+.+...++... ..+..+|+.++.. .+
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~ 191 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------EN 191 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CS
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cC
Confidence 344788999999999999999998874 48999999999998888765443322 2256788877653 24
Q ss_pred CccEEEecCCCCC
Q 008149 519 SIDFVICQNSVPQ 531 (576)
Q Consensus 519 ~~DLVIGGpPCQ~ 531 (576)
.||+|+..+|+..
T Consensus 192 ~fD~Vi~~~p~~~ 204 (278)
T 2frn_A 192 IADRILMGYVVRT 204 (278)
T ss_dssp CEEEEEECCCSSG
T ss_pred CccEEEECCchhH
Confidence 7999999999654
No 34
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.54 E-value=0.00013 Score=69.49 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||.|++.+.|.+.|. .|+++|+++.+.+..+.+....+. ....++.+|+.++.. .+.|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~ 145 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---------FLKA 145 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---------GCCC
T ss_pred CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---------cCCC
Confidence 467899999999999999999984 378999999999888877654322 112245567665431 2579
Q ss_pred cEEEecCCCCCccc
Q 008149 521 DFVICQNSVPQIPN 534 (576)
Q Consensus 521 DLVIGGpPCQ~FS~ 534 (576)
|+|+..+||..+..
T Consensus 146 D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 146 DVVFLSPPWGGPDY 159 (241)
T ss_dssp SEEEECCCCSSGGG
T ss_pred CEEEECCCcCCcch
Confidence 99999999998764
No 35
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=97.47 E-value=0.00015 Score=84.91 Aligned_cols=49 Identities=6% Similarity=-0.061 Sum_probs=39.3
Q ss_pred cccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcc
Q 008149 385 YKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSV 435 (576)
Q Consensus 385 ~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsv 435 (576)
.+.+.|++-|+.||||||++|.= ..+.+++++.+||+.-+.....+...
T Consensus 945 ~~~R~lt~rE~arlQ~fPd~~~f--~g~~~~~~~qiGNaVp~~~~~~i~~~ 993 (1002)
T 3swr_A 945 EQHRVVSVRECARSQGFPDTYRL--FGNILDKHRQVGNAVPPPLAKAIGLE 993 (1002)
T ss_dssp SSSSBCCHHHHHHHTTCCTTCCC--CSSHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred ccccCCCHHHHHHhCCCCcceEE--cCChHHHheeeeccCCHHHHHHHHHH
Confidence 35688999999999999999974 55889999999999877654444333
No 36
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.36 E-value=0.00044 Score=72.25 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=60.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+|||||||.|++++.+.+.|. ..|++||+++.+.+..+.+...++.. ...++.+|+.++- ..+...-..
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l----~~~~~~~~~ 285 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF----KYARRHHLT 285 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH----HHHHHTTCC
T ss_pred CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH----HHHHHhCCC
Confidence 457899999999999999988875 35899999999999988877654332 2234566765432 222112247
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
||+|+.-||+-+.+
T Consensus 286 fD~Ii~DPP~~~~~ 299 (385)
T 2b78_A 286 YDIIIIDPPSFARN 299 (385)
T ss_dssp EEEEEECCCCC---
T ss_pred ccEEEECCCCCCCC
Confidence 99999999986443
No 37
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.35 E-value=0.00018 Score=75.99 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||+|||.|++++.+.+.|. . |++||+++.+.+..+.+...++... .+..+|+.++- . ...+.||
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~---~~~~~fD 282 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----R---GLEGPFH 282 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----H---TCCCCEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----H---HhcCCCC
Confidence 478999999999999999999886 4 8999999999998888765443222 23345554321 1 1124599
Q ss_pred EEEecCCC
Q 008149 522 FVICQNSV 529 (576)
Q Consensus 522 LVIGGpPC 529 (576)
+|+.-|||
T Consensus 283 ~Ii~dpP~ 290 (393)
T 4dmg_A 283 HVLLDPPT 290 (393)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999999
No 38
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.32 E-value=0.00021 Score=65.73 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=58.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+||||+||.|++.+.+...|. ..|+++|+++.+.+..+.+....+.....++.+|+.++... + ..+.||
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD 115 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD 115 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence 467899999999999997777775 35899999999999888877654322223456676554210 0 125899
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|+..+|...
T Consensus 116 ~i~~~~p~~~ 125 (189)
T 3p9n_A 116 LVLADPPYNV 125 (189)
T ss_dssp EEEECCCTTS
T ss_pred EEEECCCCCc
Confidence 9999988543
No 39
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.29 E-value=0.00041 Score=61.63 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=59.6
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 008149 437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+..++.+-+|||+.||.|.+...+.+.|.. |+++|+++.+.+..+.+....+. ...+..+|+.+.. ..+...
T Consensus 36 ~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~ 107 (171)
T 1ws6_A 36 RLRYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQ 107 (171)
T ss_dssp HHHCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHT
T ss_pred HhhccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----Hhhhcc
Confidence 333435678999999999999999999864 89999999998888877654432 2234556665421 111111
Q ss_pred cCCccEEEecCCCC
Q 008149 517 LGSIDFVICQNSVP 530 (576)
Q Consensus 517 ~g~~DLVIGGpPCQ 530 (576)
.+.+|+|+..+|..
T Consensus 108 ~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 108 GERFTVAFMAPPYA 121 (171)
T ss_dssp TCCEEEEEECCCTT
T ss_pred CCceEEEEECCCCc
Confidence 23699999988864
No 40
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.27 E-value=0.00028 Score=66.39 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=55.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+||||+||.|.+++.+...|. ..|+++|+++.+.+..+.+....+.....++.+|+.++.. ...+.||+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD~ 125 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHNI 125 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEEE
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCCE
Confidence 57899999999999998777776 3589999999999999887755432222244566554211 11257999
Q ss_pred EEecCC
Q 008149 523 VICQNS 528 (576)
Q Consensus 523 VIGGpP 528 (576)
|+..+|
T Consensus 126 V~~~~p 131 (202)
T 2fpo_A 126 VFVDPP 131 (202)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999888
No 41
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.26 E-value=0.00042 Score=65.09 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC--CCCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~--~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||++||.|++++.+...|. ..|+++|+|+.+.+..+.+....+. ....+..+|+.++... + ..+.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~ 124 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--QNQP 124 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--CSSC
T ss_pred CCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--ccCC
Confidence 356899999999999998777775 3589999999999988887654432 1223445666543210 0 1246
Q ss_pred -ccEEEecCCC
Q 008149 520 -IDFVICQNSV 529 (576)
Q Consensus 520 -~DLVIGGpPC 529 (576)
||+|+..+|.
T Consensus 125 ~fD~I~~~~~~ 135 (201)
T 2ift_A 125 HFDVVFLDPPF 135 (201)
T ss_dssp CEEEEEECCCS
T ss_pred CCCEEEECCCC
Confidence 9999999883
No 42
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.25 E-value=0.00054 Score=67.89 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=60.2
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+..+-+|||+|||+|++++.+.+.+-. ..|+++|+++.+.+..+.+...++.....++.+|+.++ .. .+.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~ 186 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV 186 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence 345678999999999999988876421 24889999999999888877554333334667888776 32 247
Q ss_pred ccEEEecCCC
Q 008149 520 IDFVICQNSV 529 (576)
Q Consensus 520 ~DLVIGGpPC 529 (576)
+|+|+-.+|.
T Consensus 187 ~D~Vi~d~p~ 196 (272)
T 3a27_A 187 ADRVIMGYVH 196 (272)
T ss_dssp EEEEEECCCS
T ss_pred ceEEEECCcc
Confidence 9999999996
No 43
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.18 E-value=0.00043 Score=68.45 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=57.9
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||++||.||.+..+..+ |- ..|+++|+++...+.++.+....+.....+..+|+.++... +....+.
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~ 156 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF 156 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence 4678999999999999887763 31 24889999999988888776544332233445666544211 0011357
Q ss_pred ccEEEecCCCCCccc
Q 008149 520 IDFVICQNSVPQIPN 534 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS~ 534 (576)
||+|+..+||.++..
T Consensus 157 fD~Vl~d~Pcs~~g~ 171 (274)
T 3ajd_A 157 FDKILLDAPCSGNII 171 (274)
T ss_dssp EEEEEEEECCC----
T ss_pred CCEEEEcCCCCCCcc
Confidence 999999999998764
No 44
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.18 E-value=0.00071 Score=70.38 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=61.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||||||+|++++.+...|. .-|+++|+++.+.+..+.+...++.. ...++.+|+.++.. .+....+.|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence 567899999999999999998875 35899999999999888877544322 12244566654321 111123579
Q ss_pred cEEEecCCCCCcc
Q 008149 521 DFVICQNSVPQIP 533 (576)
Q Consensus 521 DLVIGGpPCQ~FS 533 (576)
|+|+.-||+-..+
T Consensus 291 D~Vi~dpP~~~~~ 303 (396)
T 2as0_A 291 DIVVLDPPAFVQH 303 (396)
T ss_dssp EEEEECCCCSCSS
T ss_pred CEEEECCCCCCCC
Confidence 9999999985544
No 45
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=97.11 E-value=0.0012 Score=68.54 Aligned_cols=85 Identities=20% Similarity=0.129 Sum_probs=60.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||+|||.|++++.+...+ .-|+++|+++.+.+..+.+...++.....++.+|+.++.. .+....+.+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence 46789999999999999988763 4589999999999988887654432223345566655422 1111235799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+.-||+-..+
T Consensus 282 ~Ii~dpP~~~~~ 293 (382)
T 1wxx_A 282 LVVLDPPAFAKG 293 (382)
T ss_dssp EEEECCCCSCCS
T ss_pred EEEECCCCCCCC
Confidence 999999985544
No 46
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.07 E-value=0.00074 Score=69.08 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
..+-+|||||||+|++++. .+ |. ..|+++|+++.+.+..+.+...++.. ...++.+|+.++. +.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~ 258 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK 258 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence 4567899999999999988 55 43 45899999999999998877544321 2235567776553 47
Q ss_pred ccEEEecCCCCC
Q 008149 520 IDFVICQNSVPQ 531 (576)
Q Consensus 520 ~DLVIGGpPCQ~ 531 (576)
+|+|+..+|...
T Consensus 259 fD~Vi~dpP~~~ 270 (336)
T 2yx1_A 259 GNRVIMNLPKFA 270 (336)
T ss_dssp EEEEEECCTTTG
T ss_pred CcEEEECCcHhH
Confidence 999999988654
No 47
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.06 E-value=0.00053 Score=70.97 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=58.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc------
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------ 516 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~------ 516 (576)
+-+|||||||+|++++.+.+.+ .-|+++|+++.+.+..+.+...++.....++.+|+.++.. .+...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence 4679999999999999988744 3589999999999998887754433223345667654421 11110
Q ss_pred ------cCCccEEEecCCCCCcc
Q 008149 517 ------LGSIDFVICQNSVPQIP 533 (576)
Q Consensus 517 ------~g~~DLVIGGpPCQ~FS 533 (576)
.+.||+|+--||+.+..
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~g~~ 309 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRSGLD 309 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTTCCC
T ss_pred cccccccCCCCEEEECcCccccH
Confidence 02699999999987543
No 48
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.04 E-value=0.001 Score=61.56 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||++||.|++...+.+.|. ..|+++|+++.+.+..+.+.. ...++.+|+.++. +.+|
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D 112 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD 112 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence 457899999999999999998875 348999999999888876542 2235667877653 3799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+..+|-..+.
T Consensus 113 ~v~~~~p~~~~~ 124 (200)
T 1ne2_A 113 TWIMNPPFGSVV 124 (200)
T ss_dssp EEEECCCC----
T ss_pred EEEECCCchhcc
Confidence 999998866554
No 49
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.97 E-value=0.0011 Score=74.98 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=59.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+-+|||||||.|++++.+.+.|.. -|++||+++.+....+.+...++.. ...++.+|+.++- . ...+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l----~---~~~~~ 609 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL----R---EANEQ 609 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH----H---HCCCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----H---hcCCC
Confidence 4678999999999999999888863 4899999999999998887654322 1224456665421 1 12257
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
||+|+.-|||-.-|
T Consensus 610 fD~Ii~DPP~f~~~ 623 (703)
T 3v97_A 610 FDLIFIDPPTFSNS 623 (703)
T ss_dssp EEEEEECCCSBC--
T ss_pred ccEEEECCccccCC
Confidence 99999999984433
No 50
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.93 E-value=0.0019 Score=62.76 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=60.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||.|++.+.+.+.+-. .|+++|+++.+....+.+....+... ..+..+|+.++... + ..+.|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f 120 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA 120 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence 4678999999999999999888742 58899999999988888765443322 23566788765421 1 12589
Q ss_pred cEEEecCCCCCcc
Q 008149 521 DFVICQNSVPQIP 533 (576)
Q Consensus 521 DLVIGGpPCQ~FS 533 (576)
|+|+.-||+-..+
T Consensus 121 D~Ii~npPy~~~~ 133 (259)
T 3lpm_A 121 DIVTCNPPYFATP 133 (259)
T ss_dssp EEEEECCCC----
T ss_pred cEEEECCCCCCCc
Confidence 9999999987663
No 51
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=96.90 E-value=0.0022 Score=60.32 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=58.9
Q ss_pred CCCCCcccccCCC-CChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149 440 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 440 f~~~l~VLsLFSG-iGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+.+|||+.|| .|.+.+.+.+. +. .|+++|+++.+.+..+.+....+. ...+..+|+..+.. + . -
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~---~--~ 121 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--V---V--E 121 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--T---C--C
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--c---c--c
Confidence 3467899999999 99999998887 54 478999999998888877654432 23345677654332 1 1 1
Q ss_pred CCccEEEecCCCCCcc
Q 008149 518 GSIDFVICQNSVPQIP 533 (576)
Q Consensus 518 g~~DLVIGGpPCQ~FS 533 (576)
+.||+|+.-+|+-...
T Consensus 122 ~~fD~I~~npp~~~~~ 137 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKP 137 (230)
T ss_dssp SCEEEEEECCCCC---
T ss_pred CceeEEEECCCCcCCc
Confidence 5799999999986654
No 52
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.89 E-value=0.0015 Score=60.55 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=62.1
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES 512 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~ 512 (576)
+..|..+.+.+.+|||+.||.|.+...+.+.|. ..++++|+++...+..+.+....+.....+..+|+.+..
T Consensus 51 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------ 122 (205)
T 3grz_A 51 MLGIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV------ 122 (205)
T ss_dssp HHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC------
T ss_pred HHHHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC------
Confidence 333444445678999999999999999998875 358899999999888877665443222334566765432
Q ss_pred hhhccCCccEEEecCCCCC
Q 008149 513 LIHKLGSIDFVICQNSVPQ 531 (576)
Q Consensus 513 l~~~~g~~DLVIGGpPCQ~ 531 (576)
.+.+|+|+..+|.+.
T Consensus 123 ----~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 123 ----DGKFDLIVANILAEI 137 (205)
T ss_dssp ----CSCEEEEEEESCHHH
T ss_pred ----CCCceEEEECCcHHH
Confidence 157999999887654
No 53
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.78 E-value=0.0027 Score=57.25 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||+.||.|++.+.+.+.|. ..|+++|+++.+.+..+.+....+.. ...++.+|+.+... .+....+.|
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f 117 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF 117 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence 356899999999999998777764 35889999999988888776543221 12245566654321 111113579
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+..+|
T Consensus 118 D~i~~~~~ 125 (187)
T 2fhp_A 118 DLVLLDPP 125 (187)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99998877
No 54
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.76 E-value=0.0028 Score=64.24 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=61.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.||.+..+....-.-..|+++|+++...+..+.+....+.....+..+|+.++.. ..+.||
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 189 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD 189 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence 467899999999999988876521112478999999998888877654433233355677766542 125799
Q ss_pred EEEecCCCCCcccc
Q 008149 522 FVICQNSVPQIPNS 535 (576)
Q Consensus 522 LVIGGpPCQ~FS~a 535 (576)
+|+.-+||.+....
T Consensus 190 ~Il~d~Pcsg~g~~ 203 (315)
T 1ixk_A 190 KILLDAPCTGSGTI 203 (315)
T ss_dssp EEEEECCTTSTTTC
T ss_pred EEEEeCCCCCcccc
Confidence 99999999887643
No 55
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.74 E-value=0.0057 Score=62.40 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=58.2
Q ss_pred CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+|||.|++.+-+...+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++.. ..+.+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~--------~~~~~ 273 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--------FFPEV 273 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG--------TCCCC
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc--------ccCCC
Confidence 46789999999999988777654 11 2378999999999998888765543223356678776542 12468
Q ss_pred cEEEecCCCC
Q 008149 521 DFVICQNSVP 530 (576)
Q Consensus 521 DLVIGGpPCQ 530 (576)
|+|+.-|||-
T Consensus 274 D~Ii~npPyg 283 (354)
T 3tma_A 274 DRILANPPHG 283 (354)
T ss_dssp SEEEECCCSC
T ss_pred CEEEECCCCc
Confidence 9999999983
No 56
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=96.74 E-value=0.0025 Score=67.11 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=32.9
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
..+....|++|||+++.|.+||...+. | .+.=+|||++
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~n-n-~~~A~e~L~~ 205 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYN-N-PHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCS-S-TTHHHHTTTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHh
Confidence 566789999999999999999999887 5 6777888874
No 57
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.73 E-value=0.0013 Score=53.01 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=34.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+.+..|+.|||++++|..||..+|.+ |+.-+|-||+-.
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 356779999999999999999999987 999999999743
No 58
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=96.71 E-value=0.0024 Score=76.93 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCCCccccccccccchh----hhHhhhhhh----ccCCceeeccccc-Ccccccccccc
Q 008149 247 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH 296 (576)
Q Consensus 247 ~~ppfF~~eNV~~~~~~----~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~h 296 (576)
.+|.||++|||..+-.. .+..|.+.| |.+...++||..| .||+|.|.|+=
T Consensus 971 ~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A 971 YRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp HCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred hcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence 47999999999988532 455555544 6788899999999 99999999963
No 59
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.70 E-value=0.0028 Score=67.47 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=59.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
..+-+|||||||.|.+++.|.+.|. -|+++|+++.+.+..+.+...++.. ..+..+|+.++..+ .|
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f 354 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF 354 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence 4567899999999999999988764 4789999999998888776544333 34566787765421 58
Q ss_pred cEEEecCCCCCc
Q 008149 521 DFVICQNSVPQI 532 (576)
Q Consensus 521 DLVIGGpPCQ~F 532 (576)
|+|+.-||..+.
T Consensus 355 D~Vv~dPPr~g~ 366 (425)
T 2jjq_A 355 DTVIVDPPRAGL 366 (425)
T ss_dssp SEEEECCCTTCS
T ss_pred CEEEEcCCccch
Confidence 999999986543
No 60
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=96.69 E-value=0.0048 Score=63.98 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+.+.+|||++||.|++.+.+...|.. ..++++|+|+.+.+..+.+....+.. ...+..+|+.++... .+.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~--------~~~ 286 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY--------VDS 286 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT--------CSC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc--------cCC
Confidence 45678999999999999998888752 14789999999998888876544321 123456777765421 257
Q ss_pred ccEEEecCCC
Q 008149 520 IDFVICQNSV 529 (576)
Q Consensus 520 ~DLVIGGpPC 529 (576)
+|+|+.-||.
T Consensus 287 fD~Ii~npPy 296 (373)
T 3tm4_A 287 VDFAISNLPY 296 (373)
T ss_dssp EEEEEEECCC
T ss_pred cCEEEECCCC
Confidence 9999998885
No 61
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=96.66 E-value=0.002 Score=68.28 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhh-c
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K 516 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~-~ 516 (576)
.+.+|||||||+|++++-+... |. .-|++||+++.+.+..+.|-..++... ..++.+|+.++ .. .
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~ 121 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE 121 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence 3678999999999998866552 43 458999999999999998876443221 22344554432 22 1
Q ss_pred -cCCccEEEecCCCCC
Q 008149 517 -LGSIDFVICQNSVPQ 531 (576)
Q Consensus 517 -~g~~DLVIGGpPCQ~ 531 (576)
.+.||+|+--|||..
T Consensus 122 ~~~~fD~V~lDP~g~~ 137 (392)
T 3axs_A 122 WGFGFDYVDLDPFGTP 137 (392)
T ss_dssp CSSCEEEEEECCSSCC
T ss_pred hCCCCcEEEECCCcCH
Confidence 247999999988763
No 62
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=96.63 E-value=0.0021 Score=64.84 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=62.9
Q ss_pred HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149 418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 495 (576)
Q Consensus 418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~ 495 (576)
|.+|..|-++ .+...+..+.. ..+-+|||+.||.|.++..|.+.|. -|+++|+|+......+.+....+....
T Consensus 18 k~~Gq~fl~~~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v 92 (299)
T 2h1r_A 18 YFQGQHLLKNPGILDKIIYAAKI--KSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNL 92 (299)
T ss_dssp -----CEECCHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred hccccceecCHHHHHHHHHhcCC--CCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 4456666433 33444444321 3467899999999999999988774 478999999998888876543322223
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149 496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 532 (576)
.++.+|+.++. ++.+|+|++-+|++..
T Consensus 93 ~~~~~D~~~~~----------~~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 93 EVYEGDAIKTV----------FPKFDVCTANIPYKIS 119 (299)
T ss_dssp EC----CCSSC----------CCCCSEEEEECCGGGH
T ss_pred EEEECchhhCC----------cccCCEEEEcCCcccc
Confidence 35667877654 2468999999997753
No 63
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.62 E-value=0.0035 Score=61.44 Aligned_cols=82 Identities=9% Similarity=0.029 Sum_probs=58.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|++.+.+...- +-..|+++|+++.+.+..+.+....+.....+..+|+.+.- ..+.||
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~fD 178 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQFA 178 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCCEE
T ss_pred CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCCcc
Confidence 45789999999999999887541 11247899999999998887765433222334556665421 025799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+.-|||.+.+
T Consensus 179 ~Iv~npPy~~~~ 190 (276)
T 2b3t_A 179 MIVSNPPYIDEQ 190 (276)
T ss_dssp EEEECCCCBCTT
T ss_pred EEEECCCCCCcc
Confidence 999999998764
No 64
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.60 E-value=0.0022 Score=51.64 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.7
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
+...+|++|||+.+.+.+|+...|..+ ++.-+++|+..
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewLl~~ 48 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEH 48 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCC-HHHHHHHHHhC
Confidence 477999999999999999999998777 99999999975
No 65
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=96.60 E-value=0.0033 Score=57.10 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=56.9
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 008149 436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
++...+.+.+|||+.||.|.++..|.+.|. .|+++|+++.+.+..+.+....+.....++.+|+..+.. +.
T Consensus 16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~~- 86 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----YV- 86 (185)
T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----TC-
T ss_pred HHHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----hc-
Confidence 445556678999999999999999988865 378999999998888877654332212233355544321 11
Q ss_pred ccCCccEEEecCCC
Q 008149 516 KLGSIDFVICQNSV 529 (576)
Q Consensus 516 ~~g~~DLVIGGpPC 529 (576)
.+.||+|+..++.
T Consensus 87 -~~~fD~v~~~~~~ 99 (185)
T 3mti_A 87 -REPIRAAIFNLGY 99 (185)
T ss_dssp -CSCEEEEEEEEC-
T ss_pred -cCCcCEEEEeCCC
Confidence 2579999876543
No 66
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.60 E-value=0.004 Score=63.52 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||++||.||.++.+..+ +=. ..|+++|+++...+.++.+....+.....+..+|..++.... ..++.|
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f 175 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV 175 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence 4678999999999999887653 211 248999999999999988776543323335567877765321 112579
Q ss_pred cEEEecCCCCCcccc
Q 008149 521 DFVICQNSVPQIPNS 535 (576)
Q Consensus 521 DLVIGGpPCQ~FS~a 535 (576)
|.|+--+||.++...
T Consensus 176 D~Vl~D~PcSg~G~~ 190 (309)
T 2b9e_A 176 HYILLDPSCSGSGMP 190 (309)
T ss_dssp EEEEECCCCCC----
T ss_pred CEEEEcCCcCCCCCC
Confidence 999999999987753
No 67
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.60 E-value=0.0024 Score=53.04 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=35.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
..+++..|+.|||++++|..||.+|+.| ++.-+++|+..+
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~ 68 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQS 68 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence 3468899999999999999999999975 888899999876
No 68
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.60 E-value=0.0041 Score=59.74 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-c
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~-~ 517 (576)
.+.+|||+.||.|++.+.+... +. .|+++|+++.+.+..+.+....+... ..++.+|+.+.-.+.+. .. -
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence 4678999999999988776654 43 47899999999888887765443222 23456776652111111 00 1
Q ss_pred CCccEEEecCCCCCcc
Q 008149 518 GSIDFVICQNSVPQIP 533 (576)
Q Consensus 518 g~~DLVIGGpPCQ~FS 533 (576)
+.||+|+..||+-...
T Consensus 139 ~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 139 IIYDFCMCNPPFFANQ 154 (254)
T ss_dssp CCBSEEEECCCCC---
T ss_pred CcccEEEECCCCccCc
Confidence 3699999999987554
No 69
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.56 E-value=0.002 Score=58.92 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+|||+.||.|.+...+.+.+-. ..++++|+++.+.+..+.+....+. ...+..+|+.+ .+.......+.|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f 102 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW 102 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence 45789999999999999999888532 2478999999988777665432211 12234556554 111111123689
Q ss_pred cEEEecCCCCCcc
Q 008149 521 DFVICQNSVPQIP 533 (576)
Q Consensus 521 DLVIGGpPCQ~FS 533 (576)
|+|+..+|+-...
T Consensus 103 D~i~~npp~~~~~ 115 (215)
T 4dzr_A 103 HAIVSNPPYIPTG 115 (215)
T ss_dssp SEEEECCCCCC--
T ss_pred cEEEECCCCCCCc
Confidence 9999999986544
No 70
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.53 E-value=0.0051 Score=61.47 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||+.||.|.+.+.+... +. .|+++|+++.+.+..+.+....+... ..++.+|+.+.-. ..++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-------~~f~~ 192 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-------EKFAS 192 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-------GGTTT
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-------cccCC
Confidence 3468999999999999998887 43 47899999999998888765443222 2345677765211 12344
Q ss_pred ccEEEecCCCCCccc
Q 008149 520 IDFVICQNSVPQIPN 534 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS~ 534 (576)
+|+|+.-|||-+.+.
T Consensus 193 ~D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 193 IEMILSNPPYVKSSA 207 (284)
T ss_dssp CCEEEECCCCBCGGG
T ss_pred CCEEEEcCCCCCccc
Confidence 499999999988763
No 71
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.53 E-value=0.0023 Score=48.85 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=33.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 128 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aa 128 (576)
..+++..|+.|||++++|..|+.+|+.+ ++.-+++++..
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 3468889999999999999999999975 77778888764
No 72
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.52 E-value=0.0021 Score=50.41 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=35.4
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 57 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q 57 (576)
+.-...|+.|||++++|.+|+++.|... ++.-+|+|+.++
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~Tg~~G-le~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHHHhc
Confidence 3446789999999999999999999988 999999999763
No 73
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.48 E-value=0.0036 Score=46.13 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=31.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 127 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A 127 (576)
.+++..|+.|||++++|..|+..|+. +++.-+++++.
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~--n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNW--DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTS--CHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCc--CHHHHHHHHHc
Confidence 35788999999999999999999976 47777777764
No 74
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.45 E-value=0.0055 Score=55.23 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||+.||.|++...+.+.|. ..|+++|+++.+.+..+.+....+... ..+..+|+.+.. . ...+.|
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~---~~~~~f 101 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI----D---CLTGRF 101 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH----H---HBCSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH----H---hhcCCC
Confidence 467899999999999998888874 358899999999988887765432211 123445554321 1 112569
Q ss_pred cEEEecCCC
Q 008149 521 DFVICQNSV 529 (576)
Q Consensus 521 DLVIGGpPC 529 (576)
|+|+..+|.
T Consensus 102 D~i~~~~~~ 110 (177)
T 2esr_A 102 DLVFLDPPY 110 (177)
T ss_dssp EEEEECCSS
T ss_pred CEEEECCCC
Confidence 999988774
No 75
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.0021 Score=48.37 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=33.0
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
..+...+|++|||+++.+.+|+...| + ++.-+++|+.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~--n-~e~A~~~L~~ 45 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS--T-MEQATEYLLT 45 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC--S-HHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC--C-HHHHHHHHHc
Confidence 34578999999999999999999996 5 8999999985
No 76
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.40 E-value=0.0026 Score=47.92 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=31.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 127 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A 127 (576)
.+++..|+.|||++++|..|+..+| .++.-++.|+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~---n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNTS---TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHSC---SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC---CHHHHHHHHHc
Confidence 3578899999999999999999997 58888888874
No 77
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.40 E-value=0.0031 Score=50.93 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=34.0
Q ss_pred hhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 19 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 19 ~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
...+|++|||+.+.+.||+...|..+ ++.=+++|++.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~h 48 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDH 48 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhC
Confidence 56899999999999999999999877 99999999975
No 78
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.40 E-value=0.0031 Score=68.04 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=59.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||.||.++.+..+ +=. -.|+++|+++...+.++.+....+.....+..+|..++. .. ..+.|
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F 176 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF 176 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence 4689999999999999887654 211 147899999999999888765543322223345554432 11 12579
Q ss_pred cEEEecCCCCCcccc
Q 008149 521 DFVICQNSVPQIPNS 535 (576)
Q Consensus 521 DLVIGGpPCQ~FS~a 535 (576)
|+|+--+||.+....
T Consensus 177 D~Il~DaPCSg~G~~ 191 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMF 191 (456)
T ss_dssp EEEEEECCCCCGGGT
T ss_pred CEEEECCCCCCcccc
Confidence 999999999987653
No 79
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.38 E-value=0.0034 Score=47.91 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=33.8
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
..+...+|++|||+++.+.+|++..|. | ++.-+|+|++
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~-n-~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYN-N-PHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTS-C-SHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHh
Confidence 456889999999999999999999876 5 7888999996
No 80
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.36 E-value=0.0048 Score=45.49 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=32.4
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
.+...+|++|||+++.+.+|++..+. + ++.=+++|+.
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~-n-~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNW-D-LEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTS-C-HHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCc-C-HHHHHHHHHc
Confidence 45778999999999999999999965 5 8888999984
No 81
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=96.29 E-value=0.0079 Score=53.88 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||+.||.|.+...+.+.|. .+.++|+++.+....+.+....+... ..+..+|+.+... .+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~ 119 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK 119 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence 467899999999999999888864 47899999999888887665433222 2345566654321 247
Q ss_pred ccEEEecCCCC
Q 008149 520 IDFVICQNSVP 530 (576)
Q Consensus 520 ~DLVIGGpPCQ 530 (576)
+|+|+..+|..
T Consensus 120 ~D~v~~~~~~~ 130 (194)
T 1dus_A 120 YNKIITNPPIR 130 (194)
T ss_dssp EEEEEECCCST
T ss_pred ceEEEECCCcc
Confidence 99999876643
No 82
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.28 E-value=0.008 Score=55.78 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=56.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+.+|||+-||.|.+...+.+.|. .+.++|+++......+.+....+ ....+..+|+.++.. ..+.
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~ 103 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKT 103 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTC
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCc
Confidence 33468999999999999999999986 47899999998888777654332 233356678776541 1147
Q ss_pred ccEEEecCC
Q 008149 520 IDFVICQNS 528 (576)
Q Consensus 520 ~DLVIGGpP 528 (576)
+|+|+..++
T Consensus 104 ~D~v~~~~~ 112 (227)
T 1ve3_A 104 FDYVIFIDS 112 (227)
T ss_dssp EEEEEEESC
T ss_pred EEEEEEcCc
Confidence 999998766
No 83
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.27 E-value=0.004 Score=65.28 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc---------------CCCCCcccccccccc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL 505 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t---------------n~~g~l~~~~DI~~l 505 (576)
.+.+|||||||+|++++.+... |- .-|+++|+++.+.+..+.+...+ +.....+..+|+.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence 4678999999999999887765 53 23899999999999999887543 111112233444332
Q ss_pred ChhhHHHhhhc-cCCccEEEecCCCCC
Q 008149 506 TTKKFESLIHK-LGSIDFVICQNSVPQ 531 (576)
Q Consensus 506 t~~~Ie~l~~~-~g~~DLVIGGpPCQ~ 531 (576)
... .+.||+|+--|||..
T Consensus 125 --------~~~~~~~fD~I~lDP~~~~ 143 (378)
T 2dul_A 125 --------MAERHRYFHFIDLDPFGSP 143 (378)
T ss_dssp --------HHHSTTCEEEEEECCSSCC
T ss_pred --------HHhccCCCCEEEeCCCCCH
Confidence 211 247999999998863
No 84
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.27 E-value=0.0057 Score=65.24 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhccCCc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t--n~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+-+||||+||+|+.++.|.+.|. .|++||+|+.+....+.+.... +.....++.+|+.+.-.. +. .+.|
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~-----~~~f 164 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IK-----TFHP 164 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HH-----HHCC
T ss_pred CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-cc-----CCCc
Confidence 68899999999999999998885 3789999999999998887643 221223566787764211 11 1379
Q ss_pred cEEEecCCCCC
Q 008149 521 DFVICQNSVPQ 531 (576)
Q Consensus 521 DLVIGGpPCQ~ 531 (576)
|+|+--||=.+
T Consensus 165 DvV~lDPPrr~ 175 (410)
T 3ll7_A 165 DYIYVDPARRS 175 (410)
T ss_dssp SEEEECCEEC-
T ss_pred eEEEECCCCcC
Confidence 99998887543
No 85
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=96.27 E-value=0.006 Score=59.76 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=58.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh---cCCCC-CccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~---tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+||||.||.|.+.+.+.+.+-. ..|+++|+++.+....+.+... .+... ..++.+|+.++....+.... ..
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~-~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL-PD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC-CT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc-CC
Confidence 4568999999999999988776422 3578999999999888877643 22111 23566888776322111000 12
Q ss_pred CCccEEEecCCCCCc
Q 008149 518 GSIDFVICQNSVPQI 532 (576)
Q Consensus 518 g~~DLVIGGpPCQ~F 532 (576)
+.||+|+..||....
T Consensus 114 ~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDA 128 (260)
T ss_dssp TCEEEEEECCCC---
T ss_pred CCcCEEEECCCCcCC
Confidence 579999999998765
No 86
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=96.25 E-value=0.0043 Score=62.00 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=65.3
Q ss_pred HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CC
Q 008149 418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TG 494 (576)
Q Consensus 418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g 494 (576)
|.+|..|-++ .+..++..+.. ..+-+|||+-||.|.++..|.+.|. -|+++|+|+......+......+. ..
T Consensus 4 k~~gq~fl~d~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ 78 (285)
T 1zq9_A 4 TGIGQHILKNPLIINSIIDKAAL--RPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASK 78 (285)
T ss_dssp ----CCEECCHHHHHHHHHHTCC--CTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGG
T ss_pred CCCCcCccCCHHHHHHHHHhcCC--CCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 4456555322 33444444321 3467899999999999999998875 378999999998888776532211 11
Q ss_pred CccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149 495 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 495 ~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 532 (576)
..++.+|+.++. ++.+|+|++..|++-.
T Consensus 79 v~~~~~D~~~~~----------~~~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 79 LQVLVGDVLKTD----------LPFFDTCVANLPYQIS 106 (285)
T ss_dssp EEEEESCTTTSC----------CCCCSEEEEECCGGGH
T ss_pred eEEEEcceeccc----------chhhcEEEEecCcccc
Confidence 235567877653 2368999999998753
No 87
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=96.24 E-value=0.0077 Score=63.70 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=60.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+||||+||.|.+++.|.+.+. .|+++|+++.+.+..+.+....+.....++.+|+.+.-.. + ....+.||
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-~---~~~~~~fD 358 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-Q---PWAKNGFD 358 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-S---GGGTTCCS
T ss_pred CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-h---hhhcCCCC
Confidence 456899999999999999988754 4789999999998888776544322334566787663211 0 00124799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+.-||..+..
T Consensus 359 ~Vv~dPPr~g~~ 370 (433)
T 1uwv_A 359 KVLLDPARAGAA 370 (433)
T ss_dssp EEEECCCTTCCH
T ss_pred EEEECCCCccHH
Confidence 999999987654
No 88
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.23 E-value=0.0045 Score=49.50 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=34.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|+.|||++++|..|+..|+.+ ++.-++.|+...
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 357889999999999999999999874 889999999865
No 89
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.22 E-value=0.0055 Score=66.25 Aligned_cols=86 Identities=16% Similarity=-0.016 Sum_probs=60.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.||.+..+..+--.--.|+++|+++...+..+.+....+.. ..+..+|..++. .. ..+.||
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~FD 172 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYFH 172 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccCC
Confidence 4689999999999999888754111114889999999999998876654433 334456655432 11 125799
Q ss_pred EEEecCCCCCcccc
Q 008149 522 FVICQNSVPQIPNS 535 (576)
Q Consensus 522 LVIGGpPCQ~FS~a 535 (576)
+|+--+||.+....
T Consensus 173 ~Il~D~PcSg~G~~ 186 (464)
T 3m6w_A 173 RVLLDAPCSGEGMF 186 (464)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEECCCcCCcccc
Confidence 99999999987753
No 90
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.21 E-value=0.0036 Score=50.46 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=33.4
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
+....|++|||+.+.+.|||+..|. | +|..+|.|++.
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~~-N-vErAaDWLFSH 57 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKGE-N-IEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCS-C-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHhC
Confidence 4578899999999999999999988 5 89999999975
No 91
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.20 E-value=0.0086 Score=50.75 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=36.3
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
..+...+|++|||+.+.+.+|+...|..+ ++.=+++|++.
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n-~e~A~ewL~~h 68 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSH 68 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHhC
Confidence 56788999999999999999999998777 89999999975
No 92
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.0052 Score=50.89 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=35.8
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
..+...+|++|||+++.+.+|+...|..+ ++.=+++|+..
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~ewL~~~ 48 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSH 48 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhC
Confidence 45578999999999999999999999766 89999999975
No 93
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.15 E-value=0.0058 Score=49.15 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhccc
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI 130 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq~ 130 (576)
+++..|+.|||++++|..|+..|+.+ ++.-+++|+..+.
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~ 49 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence 57889999999999999999999974 8889999998774
No 94
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=96.14 E-value=0.015 Score=53.81 Aligned_cols=81 Identities=19% Similarity=0.115 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...+.+.|. .|+++|+++......+.+....+.....+..+|+.+.... .+.||
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~D 145 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA--------RAPFD 145 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--------GCCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc--------CCCcc
Confidence 467899999999999999988864 4789999999988888776544333233556777654321 25799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+....+..+.
T Consensus 146 ~i~~~~~~~~~~ 157 (210)
T 3lbf_A 146 AIIVTAAPPEIP 157 (210)
T ss_dssp EEEESSBCSSCC
T ss_pred EEEEccchhhhh
Confidence 999876665443
No 95
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.14 E-value=0.0071 Score=65.41 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=60.5
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||++||.||.+..+..+ +-. -.|+++|+++...+.++.+....+.....+..+|..++.. . ..+.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-----~--~~~~f 188 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-----A--VPEMF 188 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-----H--STTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-----h--ccccC
Confidence 4679999999999999887764 211 2488999999999988887654432223345566665421 0 12579
Q ss_pred cEEEecCCCCCccc
Q 008149 521 DFVICQNSVPQIPN 534 (576)
Q Consensus 521 DLVIGGpPCQ~FS~ 534 (576)
|+|+--+||.+...
T Consensus 189 D~Il~D~PcSg~G~ 202 (479)
T 2frx_A 189 DAILLDAPCSGEGV 202 (479)
T ss_dssp EEEEEECCCCCGGG
T ss_pred CEEEECCCcCCccc
Confidence 99999999998764
No 96
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=96.10 E-value=0.0083 Score=57.76 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCccccccccccChhhHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t--------n~~g~l~~~~DI~~lt~~~Ie~l 513 (576)
.+.+|||++||.|++.+.+.+.+-. ..|++||+++.+....+.+.... +.....++.+|+.+.-...+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~--- 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF--- 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence 4678999999999999999887632 24789999999887776654322 22222345677765221111
Q ss_pred hhccCCccEEEecCCCCCc
Q 008149 514 IHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPCQ~F 532 (576)
..+.+|.|+--+|..-+
T Consensus 125 --~~~~~d~v~~~~p~p~~ 141 (246)
T 2vdv_E 125 --EKGQLSKMFFCFPDPHF 141 (246)
T ss_dssp --CTTCEEEEEEESCCCC-
T ss_pred --cccccCEEEEECCCccc
Confidence 12578998877776443
No 97
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.08 E-value=0.0061 Score=50.54 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=34.9
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
..+...+|++|||+++.|.+|++..+. | ++.-+|+|+..
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~-n-ve~Ave~Ll~~ 67 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAADD-D-LTVAVEILMSQ 67 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHTS-C-HHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHHC
Confidence 456889999999999999999999986 5 88999999964
No 98
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.08 E-value=0.0091 Score=54.67 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 008149 436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
|..+.+.+.+|||+-||.|.+...+.+.|.. .++++|+++.+....+..... .....+...|+.++..
T Consensus 36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~-------- 103 (215)
T 2pxx_A 36 LEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF-------- 103 (215)
T ss_dssp HGGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------
T ss_pred HHHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------
Confidence 3444466789999999999999999999873 578999999998888765432 1223345677776531
Q ss_pred ccCCccEEEecCCC
Q 008149 516 KLGSIDFVICQNSV 529 (576)
Q Consensus 516 ~~g~~DLVIGGpPC 529 (576)
..+.||+|+...+.
T Consensus 104 ~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 104 PSASFDVVLEKGTL 117 (215)
T ss_dssp CSSCEEEEEEESHH
T ss_pred CCCcccEEEECcch
Confidence 12579999976654
No 99
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=96.07 E-value=0.011 Score=62.06 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=59.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+||||.||.|.+.+.+.+.|.+ |+++|+++.+....+.+....+.. ..++..|+.+.... .+.||
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~---V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~--------~~~fD 300 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAE---VVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTE--------EARFD 300 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCE---EEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCT--------TCCEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcccc--------CCCeE
Confidence 4678999999999999999998863 789999999999888877544322 33566787765431 25799
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|+..+|...
T Consensus 301 ~Ii~npp~~~ 310 (381)
T 3dmg_A 301 IIVTNPPFHV 310 (381)
T ss_dssp EEEECCCCCT
T ss_pred EEEECCchhh
Confidence 9999888653
No 100
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=96.06 E-value=0.0076 Score=43.25 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=28.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhH
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI 125 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I 125 (576)
.+++..|+.|||++++|..|+..|+-| ++.=++.+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n--~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGD--LDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence 457889999999999999999999764 55545544
No 101
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.05 E-value=0.006 Score=51.83 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=35.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|+.|||++++|..||..++.+ ++.-+++|+..+
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~ 68 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 468999999999999999999999987 888899999865
No 102
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.03 E-value=0.0057 Score=48.86 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=34.5
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
..+...+|++|||+++.+.+|++..+. + ++.-+++|+..
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~-n-ve~A~e~L~~~ 47 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNN-S-LERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTS-C-SHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHhC
Confidence 356789999999999999999999976 5 89999999974
No 103
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=95.99 E-value=0.012 Score=61.95 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=56.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 484 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k 484 (576)
.+.+|||+|||.|++.+.+...+.++ ..|+++|+|+.+.+.-+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 46789999999999976655444321 13889999999999988
Q ss_pred HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149 485 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 485 ~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC 529 (576)
.+....+... ..+..+|+.++... +.+|+|+.-||-
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~~---------~~fD~Iv~NPPY 317 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQTE---------DEYGVVVANPPY 317 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred HHHHHcCCCCceEEEECChHhCCCC---------CCCCEEEECCCC
Confidence 8776544322 23566888776531 479999998883
No 104
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=95.95 E-value=0.0069 Score=61.62 Aligned_cols=80 Identities=13% Similarity=-0.030 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCc----eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIK----LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~----~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+|||+.||.|++.+.+.+..-. -..++++|+++.+.++.+.+....+. ...+..+|..... ..
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence 4589999999999999887654311 13589999999999888876543322 2234456653311 12
Q ss_pred CCccEEEecCCCCC
Q 008149 518 GSIDFVICQNSVPQ 531 (576)
Q Consensus 518 g~~DLVIGGpPCQ~ 531 (576)
+.||+|++-||..-
T Consensus 200 ~~fD~Ii~NPPfg~ 213 (344)
T 2f8l_A 200 DPVDVVISDLPVGY 213 (344)
T ss_dssp CCEEEEEEECCCSE
T ss_pred CCccEEEECCCCCC
Confidence 57999999999743
No 105
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=95.92 E-value=0.009 Score=60.79 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=66.4
Q ss_pred Hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc
Q 008149 419 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 496 (576)
Q Consensus 419 ~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l 496 (576)
.+|-.|-+| ++..++..+.. ..+-+|||+-||.|.++..|.+.|- -|+++|+|+.....++..... .....
T Consensus 27 ~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v~ 99 (295)
T 3gru_A 27 KLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNIE 99 (295)
T ss_dssp ---CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSEE
T ss_pred ccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCeE
Confidence 346655443 44555554432 2457899999999999999988874 478999999999888876642 12234
Q ss_pred cccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149 497 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
++.+|+.+++-.. ..+|+|++..|-+
T Consensus 100 vi~gD~l~~~~~~--------~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 100 IIWGDALKVDLNK--------LDFNKVVANLPYQ 125 (295)
T ss_dssp EEESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred EEECchhhCCccc--------CCccEEEEeCccc
Confidence 6778998876322 2589999888743
No 106
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=95.92 E-value=0.0063 Score=55.79 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=56.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhcc
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+.+|||+.||.|++...+.+. |-. ..++++|+++.+.+..+.+....+. ....+..+|+.++.. . ..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~ 91 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID 91 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence 345679999999999999887765 211 2478999999998888877654322 122345677665532 1 11
Q ss_pred CCccEEEecCCC
Q 008149 518 GSIDFVICQNSV 529 (576)
Q Consensus 518 g~~DLVIGGpPC 529 (576)
+.||+|+..+|-
T Consensus 92 ~~fD~v~~~~~~ 103 (197)
T 3eey_A 92 CPVKAVMFNLGY 103 (197)
T ss_dssp SCEEEEEEEESB
T ss_pred CCceEEEEcCCc
Confidence 579999988766
No 107
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=95.91 E-value=0.02 Score=53.74 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=62.5
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccc
Q 008149 432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDI 502 (576)
Q Consensus 432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi----~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~~~DI 502 (576)
.+..|......+.+|||+-||.|.+...+.+.+- +-..|+++|+++...+..+.+....+ .....+..+|+
T Consensus 70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 149 (227)
T 2pbf_A 70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI 149 (227)
T ss_dssp HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence 3444443344568999999999999988887652 11247899999998888777654432 12223456777
Q ss_pred cccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149 503 QALTTKKFESLIHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 503 ~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 532 (576)
.+...+... ..+.||+|+...++..+
T Consensus 150 ~~~~~~~~~----~~~~fD~I~~~~~~~~~ 175 (227)
T 2pbf_A 150 YQVNEEEKK----ELGLFDAIHVGASASEL 175 (227)
T ss_dssp GGCCHHHHH----HHCCEEEEEECSBBSSC
T ss_pred HhcccccCc----cCCCcCEEEECCchHHH
Confidence 664311101 12579999988887654
No 108
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=95.90 E-value=0.0092 Score=58.24 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=54.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+|||+-||.|.+.+.+.+.|. .|+++|+++.+....+.+....+.. ..+..+|+.+. + ..+.+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f 185 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF 185 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence 4567999999999999999999986 4789999999998888776543222 22334554431 1 12579
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+...+
T Consensus 186 D~Vv~n~~ 193 (254)
T 2nxc_A 186 DLLVANLY 193 (254)
T ss_dssp EEEEEECC
T ss_pred CEEEECCc
Confidence 99997554
No 109
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=95.88 E-value=0.0093 Score=62.48 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 484 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k 484 (576)
.+.+|||+|||.|++.+.+.+.|.++ ..|+++|+|+.+.++-+
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 46789999999999987765544221 24789999999999888
Q ss_pred HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCC
Q 008149 485 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 528 (576)
Q Consensus 485 ~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP 528 (576)
.+....+... ..+..+|+.++.. .+.+|+|+.-||
T Consensus 275 ~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP 310 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP 310 (385)
T ss_dssp HHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred HHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence 8765443221 2245677776643 146899999888
No 110
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.017 Score=61.36 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.||.+..+...--.-..|+++|+++...+..+.+....+.....+..+|+.++... + .-+.||
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD 332 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD 332 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence 4678999999999999888764211024789999999988888776544332333456777665421 1 014699
Q ss_pred EEEecCCCCCcccc
Q 008149 522 FVICQNSVPQIPNS 535 (576)
Q Consensus 522 LVIGGpPCQ~FS~a 535 (576)
+|+--+||.++...
T Consensus 333 ~Vl~D~Pcsg~g~~ 346 (450)
T 2yxl_A 333 KVLLDAPCTSSGTI 346 (450)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEEcCCCCCCeee
Confidence 99999999988754
No 111
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.87 E-value=0.0061 Score=49.11 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=33.9
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
+...+|++|||+++.+.+|+...|..+ ++.=+++|+..
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHhC
Confidence 477999999999999999999998756 89999999953
No 112
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=95.86 E-value=0.0077 Score=60.53 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=66.0
Q ss_pred Hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc
Q 008149 419 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 496 (576)
Q Consensus 419 ~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l 496 (576)
.+|..|-+| .+..++..+. . ..+ +|||+-||.|.++..|.+.|. -|+++|+|+.....++..... ....
T Consensus 24 ~~GQnfL~d~~i~~~Iv~~~~-~-~~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~ 94 (271)
T 3fut_A 24 RFGQNFLVSEAHLRRIVEAAR-P-FTG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVR 94 (271)
T ss_dssp TSSCCEECCHHHHHHHHHHHC-C-CCS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEE
T ss_pred cCCccccCCHHHHHHHHHhcC-C-CCC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEE
Confidence 345555333 3333343332 2 235 999999999999999999884 378999999999988876542 1233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149 497 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
++.+|+.+++-..+ ..+|+|+|-.|=+
T Consensus 95 vi~~D~l~~~~~~~-------~~~~~iv~NlPy~ 121 (271)
T 3fut_A 95 LVFQDALLYPWEEV-------PQGSLLVANLPYH 121 (271)
T ss_dssp EEESCGGGSCGGGS-------CTTEEEEEEECSS
T ss_pred EEECChhhCChhhc-------cCccEEEecCccc
Confidence 67799988875332 2579999988743
No 113
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.85 E-value=0.0092 Score=49.28 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=34.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|+.|||++++|..|+..||. .++.=++.|+..+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~--nve~Ave~L~~~~ 68 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHhCC
Confidence 46788999999999999999999997 6888899999765
No 114
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=95.83 E-value=0.0084 Score=59.54 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=64.6
Q ss_pred HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149 418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 495 (576)
Q Consensus 418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~ 495 (576)
|.+|-.|-+| .+..++..+.. ..+-+|||+-||.|.++..|.+.|- -|+++|+|+.....++..+.. ....
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v 77 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIHP--QKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI 77 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred CcCCcccccCHHHHHHHHHhcCC--CCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence 4456666444 34444444431 2467899999999999999998884 478999999999988876643 1223
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCC
Q 008149 496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 528 (576)
Q Consensus 496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP 528 (576)
.++.+|+.+++-..+. ..+.+| |+|-+|
T Consensus 78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP 105 (255)
T 3tqs_A 78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP 105 (255)
T ss_dssp EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence 3677999888743321 013567 777776
No 115
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=95.81 E-value=0.017 Score=56.19 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+...|.+.|.+ |+++|+++.+....+.+....+. ...+..+|+.++.. .+.+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD 186 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD 186 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence 4678999999999999999999874 68999999998888776554322 23345677776543 25799
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
+|+...+..
T Consensus 187 ~i~~~~~~~ 195 (286)
T 3m70_A 187 FIVSTVVFM 195 (286)
T ss_dssp EEEECSSGG
T ss_pred EEEEccchh
Confidence 999876544
No 116
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.80 E-value=0.012 Score=47.34 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=34.8
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 57 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q 57 (576)
..+...+|++|||+.+.+.+|++..+. + ++.=+++|++.+
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~-n-ve~A~e~L~~~~ 48 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGN-N-LEAALNVLLTSN 48 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTS-C-HHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHHCC
Confidence 456788999999999999999999876 5 899999999753
No 117
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=95.78 E-value=0.0075 Score=62.09 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=59.5
Q ss_pred HHhhhhhccccchhh-hccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149 418 ESLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE 495 (576)
Q Consensus 418 k~Lg~sf~vdtv~~~-lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~ 495 (576)
+.+|.-|+.+.+... +..+.. +.+.+|||+.||.|++.+.+.+. +-. ..+.++|+++.+.+.. ...
T Consensus 16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~ 83 (421)
T 2ih2_A 16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWA 83 (421)
T ss_dssp -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTE
T ss_pred ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCC
Confidence 455666655544443 333332 23569999999999999988753 211 3578999999875322 112
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCCCCCccc
Q 008149 496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 534 (576)
Q Consensus 496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ 534 (576)
.+..+|+.+... .+.||+|++-||.-....
T Consensus 84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence 255677765532 157999999999987653
No 118
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.76 E-value=0.0094 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=36.1
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 58 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~ 58 (576)
..++..+|++|||+++.|.+|++..|. + ++.=+|+|++.+.
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~g-d-ve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGG-N-VQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTT-C-HHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHhCCC
Confidence 467899999999999999999999986 4 8899999997643
No 119
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=95.75 E-value=0.024 Score=52.38 Aligned_cols=80 Identities=11% Similarity=0.009 Sum_probs=56.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+.+.+.+.|-. ..|+++|+++...+..+.+....+.....+..+|+.+.-. ..+.+|
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D 110 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD 110 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence 4678999999999999999988722 3478999999998888877654432222244566643321 125799
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
+|+.+.+..
T Consensus 111 ~i~~~~~~~ 119 (204)
T 3e05_A 111 RVFIGGSGG 119 (204)
T ss_dssp EEEESCCTT
T ss_pred EEEECCCCc
Confidence 999887654
No 120
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=95.74 E-value=0.018 Score=51.14 Aligned_cols=75 Identities=12% Similarity=0.056 Sum_probs=53.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+...+.+.+ ..++++|+++.+.+..+.+....+.....+..+|+.+ .++ .+.+|
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D 102 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN 102 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred CCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence 45789999999999999988844 3478999999998888877654332222244556543 111 15799
Q ss_pred EEEecCC
Q 008149 522 FVICQNS 528 (576)
Q Consensus 522 LVIGGpP 528 (576)
+|+..+|
T Consensus 103 ~i~~~~~ 109 (183)
T 2yxd_A 103 KAFIGGT 109 (183)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9999887
No 121
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=95.72 E-value=0.017 Score=60.80 Aligned_cols=79 Identities=10% Similarity=0.104 Sum_probs=56.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 484 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k 484 (576)
.+-+++|.|||.|++.+.+...+.++ ..++++|+|+.+.+..+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 45789999999999976655443321 13889999999999998
Q ss_pred HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149 485 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 485 ~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC 529 (576)
.+....+... ..+..+|+.++... +.+|+|+.-||-
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l~~~---------~~fD~Iv~NPPY 310 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDFKTN---------KINGVLISNPPY 310 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred HHHHHcCCCCceEEEECChHHCCcc---------CCcCEEEECCch
Confidence 8876554322 23556788776531 379999988884
No 122
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.72 E-value=0.013 Score=52.47 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=56.2
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+.+|||+-||.|.+...+.+.|.+ +.++|+++.+....+.... ...+...|+.++.. ..+
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~ 106 (195)
T 3cgg_A 43 MAPRGAKILDAGCGQGRIGGYLSKQGHD---VLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SET 106 (195)
T ss_dssp HSCTTCEEEEETCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCC
T ss_pred hccCCCeEEEECCCCCHHHHHHHHCCCc---EEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCC
Confidence 3456789999999999999999998863 7889999998887776432 22345677766531 125
Q ss_pred CccEEEecCCCCC
Q 008149 519 SIDFVICQNSVPQ 531 (576)
Q Consensus 519 ~~DLVIGGpPCQ~ 531 (576)
.+|+|+..+++-.
T Consensus 107 ~~D~i~~~~~~~~ 119 (195)
T 3cgg_A 107 DFDLIVSAGNVMG 119 (195)
T ss_dssp CEEEEEECCCCGG
T ss_pred ceeEEEECCcHHh
Confidence 7999998655543
No 123
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=95.72 E-value=0.019 Score=53.81 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=60.7
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-----CCCccccccccccC
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-----TGELVQIEDIQALT 506 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~-----~g~l~~~~DI~~lt 506 (576)
+..|......+.+|||+-||.|++...+.+. |-. ..|+++|+++...+..+.+....+. ....+...|+....
T Consensus 68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (226)
T 1i1n_A 68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY 146 (226)
T ss_dssp HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence 4444433455789999999999999888765 422 2478999999988877766543211 11223456665432
Q ss_pred hhhHHHhhhccCCccEEEecCCCCCc
Q 008149 507 TKKFESLIHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 507 ~~~Ie~l~~~~g~~DLVIGGpPCQ~F 532 (576)
. ..+.||+|+...||..+
T Consensus 147 ~--------~~~~fD~i~~~~~~~~~ 164 (226)
T 1i1n_A 147 A--------EEAPYDAIHVGAAAPVV 164 (226)
T ss_dssp G--------GGCCEEEEEECSBBSSC
T ss_pred c--------cCCCcCEEEECCchHHH
Confidence 1 12579999999999765
No 124
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.67 E-value=0.0086 Score=54.61 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=51.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+|||+.||.|.+...+.+.| .|+++|+++.+.+. . ....+..+|+.+.-.+ +.||+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~--~~~~~~~~d~~~~~~~---------~~fD~ 81 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------H--RGGNLVRADLLCSINQ---------ESVDV 81 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------C--SSSCEEECSTTTTBCG---------GGCSE
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------c--cCCeEEECChhhhccc---------CCCCE
Confidence 4589999999999999999988 47899999998654 1 1223566787652211 46999
Q ss_pred EEecCCCCCcc
Q 008149 523 VICQNSVPQIP 533 (576)
Q Consensus 523 VIGGpPCQ~FS 533 (576)
|+..+|-...+
T Consensus 82 i~~n~~~~~~~ 92 (170)
T 3q87_B 82 VVFNPPYVPDT 92 (170)
T ss_dssp EEECCCCBTTC
T ss_pred EEECCCCccCC
Confidence 99988765543
No 125
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.66 E-value=0.01 Score=48.95 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=35.4
Q ss_pred chhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 15 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 15 ~~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
...++..+|++|||+++.+.+|++..|. + ++.=+++|++.
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~-n-ve~Ave~L~~~ 67 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGG-D-IEKATDWVFNN 67 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTS-C-HHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHhC
Confidence 3567889999999999999999999986 6 88999999964
No 126
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=95.66 E-value=0.017 Score=53.62 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=59.7
Q ss_pred ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCccccccccccChh
Q 008149 434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTK 508 (576)
Q Consensus 434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-----g~l~~~~DI~~lt~~ 508 (576)
..++.+.+.+.+|||+-||.|.+...+...|.. |+++|+++.+....+.+....+.. ...+...|+.++..
T Consensus 22 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 97 (235)
T 3sm3_A 22 PIIHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF- 97 (235)
T ss_dssp TTHHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-
T ss_pred HHHHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-
Confidence 344555667889999999999999999999873 789999999988887765432211 01234566665531
Q ss_pred hHHHhhhccCCccEEEecCCCCC
Q 008149 509 KFESLIHKLGSIDFVICQNSVPQ 531 (576)
Q Consensus 509 ~Ie~l~~~~g~~DLVIGGpPCQ~ 531 (576)
..+.+|+|+.......
T Consensus 98 -------~~~~~D~v~~~~~l~~ 113 (235)
T 3sm3_A 98 -------HDSSFDFAVMQAFLTS 113 (235)
T ss_dssp -------CTTCEEEEEEESCGGG
T ss_pred -------CCCceeEEEEcchhhc
Confidence 1257999997654443
No 127
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.64 E-value=0.012 Score=47.32 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
+++..|+.|||++++|..|+..||.. .++.-+++|+..+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewLl~~~ 49 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQ-GIEAAMDWLMEHE 49 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCC-CHHHHHHHHHhCC
Confidence 37889999999999999999999743 6999999999876
No 128
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=95.62 E-value=0.014 Score=54.71 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=58.5
Q ss_pred hhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhH
Q 008149 431 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 510 (576)
Q Consensus 431 ~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~I 510 (576)
..+..+..+.+.+.+|||+-||.|.+...+.+.|.+ |+++|+++.+....+... ......+..+|+.++...
T Consensus 42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~-- 113 (242)
T 3l8d_A 42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFE-- 113 (242)
T ss_dssp THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSC--
T ss_pred HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCC--
Confidence 344555566667889999999999999999999874 689999999887776432 112233556777765421
Q ss_pred HHhhhccCCccEEEecC
Q 008149 511 ESLIHKLGSIDFVICQN 527 (576)
Q Consensus 511 e~l~~~~g~~DLVIGGp 527 (576)
-+.||+|+...
T Consensus 114 ------~~~fD~v~~~~ 124 (242)
T 3l8d_A 114 ------NEQFEAIMAIN 124 (242)
T ss_dssp ------TTCEEEEEEES
T ss_pred ------CCCccEEEEcC
Confidence 24788888643
No 129
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=95.60 E-value=0.02 Score=60.29 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=62.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.||.+..+...+-. ..|+++|+++...+..+.+....+.. ..+..+|..++.. .+ ..+.||
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~-~~-----~~~~fD 317 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQ-WC-----GEQQFD 317 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHH-HH-----TTCCEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchh-hc-----ccCCCC
Confidence 4678999999999999998877532 35889999999888888776544322 2345677766531 11 114799
Q ss_pred EEEecCCCCCcccc
Q 008149 522 FVICQNSVPQIPNS 535 (576)
Q Consensus 522 LVIGGpPCQ~FS~a 535 (576)
+|+.-+||.++...
T Consensus 318 ~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 318 RILLDAPCSATGVI 331 (429)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEEeCCCCccccc
Confidence 99999999988654
No 130
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=95.59 E-value=0.032 Score=64.47 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=69.6
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhh--hhhhhHHHHH
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDET--LYGTMEITLQ 94 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~--~~~~~~k~~~ 94 (576)
.+..++|++|||+.....||+...|..+ ++.-.+.|++...-.. ..+.. ........++... .....+.+..
T Consensus 653 ~~~l~~L~~mGf~~~~~~kal~~t~n~~-~e~a~~wl~~hmdd~d--i~~p~---~~~~~~~~~s~~~~~~~~~~e~i~~ 726 (854)
T 3ihp_A 653 ESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHMDDPD--FANPL---ILPGSSGPGSTSAAADPPPEDCVTT 726 (854)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHTTSCC-HHHHHHHHHHHTTSCG--GGSCC---CCC--------------CCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHhhcCCCc-hHHHhHHHhhccCccc--ccccc---cccccccccccccccCCCCHHHHHH
Confidence 4578999999999999999999999988 8888999986421110 00000 0000000000000 0113457788
Q ss_pred HHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149 95 LLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 128 (576)
Q Consensus 95 L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aa 128 (576)
|..|||+++++..|+...+. .++.-+|.|+.-
T Consensus 727 l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs~ 758 (854)
T 3ihp_A 727 IVSMGFSRDQALKALRATNN--SLERAVDWIFSH 758 (854)
T ss_dssp HHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhcC
Confidence 99999999999999999986 588888888873
No 131
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.53 E-value=0.017 Score=44.69 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=34.9
Q ss_pred hhhhhHHHhcCCC-ChHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149 16 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ 57 (576)
Q Consensus 16 ~s~~r~~li~MGF-s~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q 57 (576)
..++..+|++||| +.+.+.+|++..|. | ++.=+|+|+..+
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n-ve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIATGG-D-INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHTS-C-HHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCC-C-HHHHHHHHHHcC
Confidence 4557899999999 99999999999987 5 889999999743
No 132
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=95.52 E-value=0.031 Score=50.58 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=54.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+|||+-||.|.+...+.+.|.+ ++++|+++.+.+..+......+.....+...|+.++.. .+.+|+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D~ 100 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYD---VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYDF 100 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCceE
Confidence 469999999999999999988863 78999999998888776644332233345677776542 257899
Q ss_pred EEecCCC
Q 008149 523 VICQNSV 529 (576)
Q Consensus 523 VIGGpPC 529 (576)
|+....-
T Consensus 101 v~~~~~l 107 (199)
T 2xvm_A 101 ILSTVVL 107 (199)
T ss_dssp EEEESCG
T ss_pred EEEcchh
Confidence 9876543
No 133
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=95.49 E-value=0.024 Score=52.98 Aligned_cols=82 Identities=20% Similarity=0.083 Sum_probs=56.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+||||.||.|.+.+.+.+..-. ..++++|+++.+....+.+....+.....++.+|+.++.. .+ ..+.+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence 3578999999999999988776321 2478999999998888776544332223356678776431 01 124799
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
+|+..+|..
T Consensus 114 ~i~~~~~~~ 122 (214)
T 1yzh_A 114 RLYLNFSDP 122 (214)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 999887754
No 134
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=95.46 E-value=0.015 Score=41.61 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=30.4
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 54 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll 54 (576)
..+...+|++|||+.+.+.+|++..+. | ++.=+++|+
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~-n-~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANG-D-LDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTT-C-HHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHC
Confidence 355789999999999999999999865 5 777777763
No 135
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.46 E-value=0.021 Score=44.22 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=34.1
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGF-seeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|+.||| +++.+..|+..||-| ++.-++.++..+
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence 468889999999 999999999999985 888889888765
No 136
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.45 E-value=0.016 Score=47.89 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=35.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|+.|||++++|..|+..||.. .++.=+++|+..+
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~-~ve~A~ewL~~~~ 49 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGNS-GAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-CHHHHHHHHHhCC
Confidence 357789999999999999999999973 6888899999876
No 137
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=95.44 E-value=0.033 Score=52.43 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=53.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||.|.+.+.+.+.|. .|+++|+++.+.+..+.+....+.. ...+..+|+.+.- ...+.|
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~ 123 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP 123 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence 457899999999999998888865 3789999999988888766544333 2234566765521 112579
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+-+.
T Consensus 124 D~v~~~~ 130 (204)
T 3njr_A 124 EAVFIGG 130 (204)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 9998654
No 138
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=95.44 E-value=0.023 Score=58.65 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=58.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~-lt~~~Ie~l~~~~g~~D 521 (576)
+.+|||+. |.|.+.+.+.+.|.. ..|+++|+++.+.+..+.+....+.....++.+|+.+ +... ..+.||
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~fD 243 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKFD 243 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCBS
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCcc
Confidence 57899999 999999999888752 3488999999999888887654432223356788876 4321 014799
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|+..+||..
T Consensus 244 ~Vi~~~p~~~ 253 (373)
T 2qm3_A 244 TFITDPPETL 253 (373)
T ss_dssp EEEECCCSSH
T ss_pred EEEECCCCch
Confidence 9999999853
No 139
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=95.42 E-value=0.015 Score=52.17 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 91 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 91 k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
-+.+|+.||||++.|.+|+..+|. +++..+++|++-+
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~g~--~~e~amewL~~h~ 47 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAAGA--NIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHCc--CHHHHHHHHHHhc
Confidence 345899999999999999999998 7999999999975
No 140
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=95.41 E-value=0.022 Score=52.16 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=52.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+ +|||+-||.|.+...|.+.|.+ ++++|+++.+....+......+. ...+...|+.++.. ..+.+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f 95 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGYE---VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW 95 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTCE---EEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence 345 9999999999999999998873 78999999988877766543321 22345567766531 12478
Q ss_pred cEEEec
Q 008149 521 DFVICQ 526 (576)
Q Consensus 521 DLVIGG 526 (576)
|+|+..
T Consensus 96 D~v~~~ 101 (202)
T 2kw5_A 96 EGIVSI 101 (202)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 999974
No 141
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=95.39 E-value=0.027 Score=54.84 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=60.8
Q ss_pred Hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc
Q 008149 419 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 496 (576)
Q Consensus 419 ~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l 496 (576)
.+|..|-++ .+...+..+. ...+-+|||+.||.|.++..|.+.|. .|+++|+|+......+.+... .....
T Consensus 7 ~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~ 79 (244)
T 1qam_A 7 KHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQ 79 (244)
T ss_dssp ---CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEE
T ss_pred cCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeE
Confidence 345555333 3334444442 13467899999999999999998884 478999999999888876532 12233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149 497 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC 529 (576)
++.+|+.++.... ...+ .|++.+|=
T Consensus 80 ~~~~D~~~~~~~~-------~~~~-~vv~nlPy 104 (244)
T 1qam_A 80 VLNKDILQFKFPK-------NQSY-KIFGNIPY 104 (244)
T ss_dssp EECCCGGGCCCCS-------SCCC-EEEEECCG
T ss_pred EEEChHHhCCccc-------CCCe-EEEEeCCc
Confidence 5678887765311 1234 57777764
No 142
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.36 E-value=0.015 Score=46.75 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
+++..|+.|||++++|..|+..||.. .++.=+++|+..+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGR-SVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTS-CHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC-CHHHHHHHHHhCC
Confidence 47889999999999999999999973 5888899998755
No 143
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=95.33 E-value=0.019 Score=44.37 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=33.4
Q ss_pred hhhhhHHHhcCCC-ChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 16 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 16 ~s~~r~~li~MGF-s~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
..+...+|++||| +.+.+.+|++..|. | ++.=+|+|++
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n-~e~A~e~L~~ 50 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGG-D-INAAIERLLG 50 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-C-HHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCC-C-HHHHHHHHHh
Confidence 4558899999999 99999999999987 5 8899999985
No 144
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=95.29 E-value=0.04 Score=50.95 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=52.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+.+|||+-||.|.+...|.+.|.. ++++|+++......+... +..+...|+.++.. .+.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~ 102 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA 102 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence 345789999999999999999999874 678999999887776643 12245677776651 257
Q ss_pred ccEEEecC
Q 008149 520 IDFVICQN 527 (576)
Q Consensus 520 ~DLVIGGp 527 (576)
||+|+...
T Consensus 103 fD~v~~~~ 110 (211)
T 3e23_A 103 YDAVWAHA 110 (211)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 89998654
No 145
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=95.24 E-value=0.029 Score=50.02 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||.|.+...+.+.+ ..++++|+++.+.+..+.+....+. ....+..+|+.+ .....+.+
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~ 101 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI 101 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence 46789999999999999998888 3578999999998888776644322 111233444433 11112579
Q ss_pred cEEEecCCCCC
Q 008149 521 DFVICQNSVPQ 531 (576)
Q Consensus 521 DLVIGGpPCQ~ 531 (576)
|+|+...+...
T Consensus 102 D~v~~~~~~~~ 112 (192)
T 1l3i_A 102 DIAVVGGSGGE 112 (192)
T ss_dssp EEEEESCCTTC
T ss_pred CEEEECCchHH
Confidence 99998876544
No 146
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=95.23 E-value=0.035 Score=53.49 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+.+.+|||+-||.|.+...+.+.+. ..|+++|+++......+......+..+ ..+..+|+.++... .+.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~ 114 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR--------NEE 114 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC--------TTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC--------CCC
Confidence 4578999999999999999988853 247899999998888777654433222 33566788776421 257
Q ss_pred ccEEEecCCCCCc
Q 008149 520 IDFVICQNSVPQI 532 (576)
Q Consensus 520 ~DLVIGGpPCQ~F 532 (576)
||+|+.......+
T Consensus 115 fD~i~~~~~~~~~ 127 (267)
T 3kkz_A 115 LDLIWSEGAIYNI 127 (267)
T ss_dssp EEEEEESSCGGGT
T ss_pred EEEEEEcCCceec
Confidence 9999977665443
No 147
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=95.22 E-value=0.019 Score=55.08 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=57.0
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES 512 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~ 512 (576)
...|....+.+.+|||+-||.|.+...|.+.|.+ |+++|+++......+.... ...+..+|+.++..
T Consensus 41 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~----- 107 (263)
T 3pfg_A 41 AALVRRHSPKAASLLDVACGTGMHLRHLADSFGT---VEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL----- 107 (263)
T ss_dssp HHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-----
T ss_pred HHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-----
Confidence 3444555567789999999999999999999863 7899999998887765432 23355678776542
Q ss_pred hhhccCCccEEEecC
Q 008149 513 LIHKLGSIDFVICQN 527 (576)
Q Consensus 513 l~~~~g~~DLVIGGp 527 (576)
.+.||+|+...
T Consensus 108 ----~~~fD~v~~~~ 118 (263)
T 3pfg_A 108 ----GRRFSAVTCMF 118 (263)
T ss_dssp ----SCCEEEEEECT
T ss_pred ----cCCcCEEEEcC
Confidence 14788888654
No 148
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=95.19 E-value=0.039 Score=52.67 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||+.||.|++...+.+. |=. ..++++|+++...+..+.+....+... ..+..+|+.+.-. .+.
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~ 162 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE---------EEN 162 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC---------CCS
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC---------CCC
Confidence 4678999999999999999887 411 347899999998888877665443222 2345667764311 146
Q ss_pred ccEEEecCCCC
Q 008149 520 IDFVICQNSVP 530 (576)
Q Consensus 520 ~DLVIGGpPCQ 530 (576)
+|+|+..+|+.
T Consensus 163 ~D~v~~~~~~~ 173 (255)
T 3mb5_A 163 VDHVILDLPQP 173 (255)
T ss_dssp EEEEEECSSCG
T ss_pred cCEEEECCCCH
Confidence 99999987765
No 149
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=95.16 E-value=0.024 Score=53.90 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...+.+.|.. .|+++|+++......+.... .....+..+|+.++.. .-+.||
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD 110 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN 110 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence 4689999999999999999999873 47899999998887766432 1222355677776542 115789
Q ss_pred EEEecC
Q 008149 522 FVICQN 527 (576)
Q Consensus 522 LVIGGp 527 (576)
+|+...
T Consensus 111 ~v~~~~ 116 (253)
T 3g5l_A 111 VVLSSL 116 (253)
T ss_dssp EEEEES
T ss_pred EEEEch
Confidence 998755
No 150
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=95.16 E-value=0.038 Score=51.58 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=54.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+|||+-||.|.+...+.+.|.+ +.++|+++......+......+. ...+..+|+.++.. .+.+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~f 102 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI---------NRKF 102 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC---------SCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc---------cCCc
Confidence 45689999999999999999998863 78899999988887776543321 22345677766542 1579
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+...
T Consensus 103 D~v~~~~ 109 (246)
T 1y8c_A 103 DLITCCL 109 (246)
T ss_dssp EEEEECT
T ss_pred eEEEEcC
Confidence 9999644
No 151
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=95.15 E-value=0.048 Score=51.11 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=56.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...+...|. .|+++|+++......+......+ ...+..+|+.+.-. ..+.||
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~fD 136 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPYD 136 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCcc
Confidence 467899999999999999998883 47899999999888877654321 22345567655211 125799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+...++..+.
T Consensus 137 ~v~~~~~~~~~~ 148 (231)
T 1vbf_A 137 RVVVWATAPTLL 148 (231)
T ss_dssp EEEESSBBSSCC
T ss_pred EEEECCcHHHHH
Confidence 999888776553
No 152
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.13 E-value=0.019 Score=46.29 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 91 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 91 k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+..|+.|||+++.|..|+-.+|.. .++.=++.|+..+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~-~~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRK-TAEEALAWLHDHC 49 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSC-CHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCC-CHHHHHHHHHhCC
Confidence 6789999999999999999999983 7999999999877
No 153
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=95.13 E-value=0.04 Score=56.13 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=57.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||++||.||.+..+-+.+=. ..|+++|+|+.+....+.+....+ ....++.+|..++.. .+..+ ..+.||
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D 100 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD 100 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence 3568999999999999988775211 247899999999988877654332 122345677765531 11110 124799
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
.|+--+||..
T Consensus 101 ~Vl~D~gvSs 110 (301)
T 1m6y_A 101 GILMDLGVST 110 (301)
T ss_dssp EEEEECSCCH
T ss_pred EEEEcCccch
Confidence 9999888853
No 154
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.08 E-value=0.032 Score=47.21 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=33.9
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
..+...+|++|||+.+.+.+|+...+ .+ ++.=+++|+..
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~-~n-ve~A~ewL~~~ 67 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNH-MS-VPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT-SC-HHHHHHHHHHG
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC-CC-HHHHHHHHHHC
Confidence 45678999999999999999999984 35 89999999975
No 155
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=95.06 E-value=0.023 Score=65.62 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=61.0
Q ss_pred hhhhhccccchhhhcc-----ccccCCCCCcccccCCCCChhHHHHHHc-C-CceeeEEEeeCCHHHHHHH--HHHhhhc
Q 008149 420 LRHCFQTDTLGYHLSV-----LKSMFPGGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRIL--KRWWESS 490 (576)
Q Consensus 420 Lg~sf~vdtv~~~lsv-----LK~~f~~~l~VLsLFSGiGG~slGL~~a-G-i~~k~vvavEid~~a~~t~--k~~~~~t 490 (576)
.|..+....++..+.- +.+..+.+.+|+|.+||.|++-+++.+. + ..-..++++||++.+.++. +.+...+
T Consensus 294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 3444555555544322 2333456789999999999999887653 2 2123578999999988776 4332110
Q ss_pred ----CCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149 491 ----GQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 491 ----n~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
+.....+..+|....+.. ..+.||+|||=||=-
T Consensus 374 ~LlhGi~~~~I~~dD~L~~~~~-------~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 374 QLVSSNNAPTITGEDVCSLNPE-------DFANVSVVVMNPPYV 410 (878)
T ss_dssp TTCBTTBCCEEECCCGGGCCGG-------GGTTEEEEEECCBCC
T ss_pred hhhcCCCcceEEecchhccccc-------ccCCCCEEEECCCcc
Confidence 000112233444333211 236899999999974
No 156
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=95.02 E-value=0.067 Score=50.73 Aligned_cols=81 Identities=10% Similarity=0.078 Sum_probs=58.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+.+.+|||+-||.|.+...+.+.+-. .|+++|+++......+......+... ..+..+|+.++... .+.
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~ 114 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ--------NEE 114 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC--------TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC--------CCC
Confidence 34679999999999999999888642 57899999998888877655443222 23566788766421 257
Q ss_pred ccEEEecCCCCC
Q 008149 520 IDFVICQNSVPQ 531 (576)
Q Consensus 520 ~DLVIGGpPCQ~ 531 (576)
||+|+.......
T Consensus 115 fD~v~~~~~l~~ 126 (257)
T 3f4k_A 115 LDLIWSEGAIYN 126 (257)
T ss_dssp EEEEEEESCSCC
T ss_pred EEEEEecChHhh
Confidence 999997755444
No 157
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=95.00 E-value=0.0087 Score=45.41 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=31.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 127 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A 127 (576)
.+++..|+.|||++..|..|+..||. +++.=++.++.
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~~--n~e~A~~~Lf~ 41 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACEK--NENLAANFLLS 41 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTTS--CHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC--CHHHHHHHHHh
Confidence 45788999999999999999999994 46666777775
No 158
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=95.00 E-value=0.052 Score=51.36 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=59.2
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149 438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
...+.+.+|||+-||.|.+...|.+.|. .|+++|+++.+....+.... .....+..+|+.++....- + ...
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~--~-~~~ 122 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQ--I-HSE 122 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHH--H-HHH
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccc--c-ccc
Confidence 3345678899999999999999999886 37899999998887776532 1223356678877643211 1 001
Q ss_pred CCccEEEecCCCCCcc
Q 008149 518 GSIDFVICQNSVPQIP 533 (576)
Q Consensus 518 g~~DLVIGGpPCQ~FS 533 (576)
..+|+|+...-..-+.
T Consensus 123 ~~~d~v~~~~~~~~~~ 138 (245)
T 3ggd_A 123 IGDANIYMRTGFHHIP 138 (245)
T ss_dssp HCSCEEEEESSSTTSC
T ss_pred cCccEEEEcchhhcCC
Confidence 2489999876555444
No 159
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=94.92 E-value=0.031 Score=58.22 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=53.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC---CccccccccccChhhHHHhhhccCC
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g---~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+.+||||+||.|.+.+.+.+.+-. ..|+++|+++.+.+..+.+....+... ..+..+|+.+.- ..+.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~ 292 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFR 292 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCC
Confidence 378999999999999999888411 247899999999988887765432110 112445554311 1247
Q ss_pred ccEEEecCCCC
Q 008149 520 IDFVICQNSVP 530 (576)
Q Consensus 520 ~DLVIGGpPCQ 530 (576)
||+|+..||..
T Consensus 293 fD~Ii~nppfh 303 (375)
T 4dcm_A 293 FNAVLCNPPFH 303 (375)
T ss_dssp EEEEEECCCC-
T ss_pred eeEEEECCCcc
Confidence 99999999864
No 160
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=94.88 E-value=0.05 Score=54.63 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=59.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|++...+.+.|-+-..|+++|+++...+..+.+....+.....+..+|+.+... ..+.||
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 146 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD 146 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence 467999999999999988887764212378999999988887776654332223345677765422 125799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+...++..+.
T Consensus 147 ~Iv~~~~~~~~~ 158 (317)
T 1dl5_A 147 VIFVTVGVDEVP 158 (317)
T ss_dssp EEEECSBBSCCC
T ss_pred EEEEcCCHHHHH
Confidence 999988877653
No 161
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=94.88 E-value=0.027 Score=56.26 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=50.5
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC---------CccccccccccChhhHHHhh
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---------ELVQIEDIQALTTKKFESLI 514 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g---------~l~~~~DI~~lt~~~Ie~l~ 514 (576)
.+|||+|||.|..++-|-..|.. |++||+++....+++.+........ ..++.+|..++ .
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~--------L 158 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--------L 158 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH--------S
T ss_pred CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH--------H
Confidence 78999999999999988888863 7899999987666665443221000 11233444332 1
Q ss_pred hc-cCCccEEEecCCCCC
Q 008149 515 HK-LGSIDFVICQNSVPQ 531 (576)
Q Consensus 515 ~~-~g~~DLVIGGpPCQ~ 531 (576)
.. ...||+|+--||=..
T Consensus 159 ~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 159 TDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp TTCSSCCSEEEECCCCCC
T ss_pred HhCcccCCEEEEcCCCCC
Confidence 11 136999999887643
No 162
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=94.85 E-value=0.043 Score=50.75 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+..+|+.++.. .-+.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f 107 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV 107 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence 3467999999999999999988762212478999999988888776654432333355677776541 12469
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+....
T Consensus 108 D~v~~~~~ 115 (219)
T 3dh0_A 108 DFIFMAFT 115 (219)
T ss_dssp EEEEEESC
T ss_pred eEEEeehh
Confidence 99996543
No 163
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=94.84 E-value=0.037 Score=51.86 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=53.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh-hHHHhhh--c
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-KFESLIH--K 516 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~-~Ie~l~~--~ 516 (576)
++.+.+||||-||.||++..+.+.+- .|+++|+++.. ..++..++.+|+++.... .+..... .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 34578999999999999999887754 47899999863 122344677999886532 2222221 0
Q ss_pred cCCccEEEecCCCCC
Q 008149 517 LGSIDFVICQNSVPQ 531 (576)
Q Consensus 517 ~g~~DLVIGGpPCQ~ 531 (576)
.+.||+|+.-.|++.
T Consensus 89 ~~~~D~Vlsd~~~~~ 103 (191)
T 3dou_A 89 IEKVDDVVSDAMAKV 103 (191)
T ss_dssp CSSEEEEEECCCCCC
T ss_pred CCcceEEecCCCcCC
Confidence 148999998776543
No 164
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=94.84 E-value=0.035 Score=55.09 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=58.0
Q ss_pred chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc-------CCCCCcccccc
Q 008149 429 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIED 501 (576)
Q Consensus 429 v~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t-------n~~g~l~~~~D 501 (576)
+...+..|....+.+.+|||+-||.|++...+.+.+. ..++++|+++...+..+...... +.....+..+|
T Consensus 21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D 98 (313)
T 3bgv_A 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98 (313)
T ss_dssp HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence 3334444555445678999999999999998887654 35889999999887777655322 11112345677
Q ss_pred ccccChhhHHHhhhccCCccEEEecC
Q 008149 502 IQALTTKKFESLIHKLGSIDFVICQN 527 (576)
Q Consensus 502 I~~lt~~~Ie~l~~~~g~~DLVIGGp 527 (576)
+.++.... .+....+.||+|+...
T Consensus 99 ~~~~~~~~--~~~~~~~~fD~V~~~~ 122 (313)
T 3bgv_A 99 SSKELLID--KFRDPQMCFDICSCQF 122 (313)
T ss_dssp TTTSCSTT--TCSSTTCCEEEEEEET
T ss_pred ccccchhh--hcccCCCCEEEEEEec
Confidence 77654100 0000124689998654
No 165
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=94.77 E-value=0.06 Score=51.00 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...|.+.|.+ |+++|+++......+......+. ...+..+|+.++.. .+.+|
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---------~~~fD 107 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---------KNEFD 107 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC---------CSCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc---------CCCcc
Confidence 4578999999999999999999874 78999999998888776543321 22345677766532 13577
Q ss_pred EEEe
Q 008149 522 FVIC 525 (576)
Q Consensus 522 LVIG 525 (576)
+|+.
T Consensus 108 ~v~~ 111 (252)
T 1wzn_A 108 AVTM 111 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 166
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=94.70 E-value=0.051 Score=53.98 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=57.9
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccCh
Q 008149 430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT 507 (576)
Q Consensus 430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~ 507 (576)
...+..|... +.+.+|||+.||.|++...+.+. |.+ |+++|+++......+.+....+.. ...+..+|+.++.-
T Consensus 106 ~~l~~~l~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 181 (312)
T 3vc1_A 106 EFLMDHLGQA-GPDDTLVDAGCGRGGSMVMAHRRFGSR---VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF 181 (312)
T ss_dssp HHHHTTSCCC-CTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred HHHHHHhccC-CCCCEEEEecCCCCHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC
Confidence 3344444322 35688999999999999998876 753 789999999888777765543322 12356678876541
Q ss_pred hhHHHhhhccCCccEEEec
Q 008149 508 KKFESLIHKLGSIDFVICQ 526 (576)
Q Consensus 508 ~~Ie~l~~~~g~~DLVIGG 526 (576)
..+.||+|+..
T Consensus 182 --------~~~~fD~V~~~ 192 (312)
T 3vc1_A 182 --------DKGAVTASWNN 192 (312)
T ss_dssp --------CTTCEEEEEEE
T ss_pred --------CCCCEeEEEEC
Confidence 11578999853
No 167
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=94.67 E-value=0.039 Score=53.69 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
-+.+.+|||+-||.|.+...|.+.|.+ |+++|+++......+......+. ....+..+|+.++.. + ..+
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~ 135 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-----H--LET 135 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-----G--CSS
T ss_pred CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-----h--cCC
Confidence 345789999999999999999999874 68999999988887766543221 112245677766542 0 125
Q ss_pred CccEEEecCCC
Q 008149 519 SIDFVICQNSV 529 (576)
Q Consensus 519 ~~DLVIGGpPC 529 (576)
.||+|+.....
T Consensus 136 ~fD~v~~~~~l 146 (285)
T 4htf_A 136 PVDLILFHAVL 146 (285)
T ss_dssp CEEEEEEESCG
T ss_pred CceEEEECchh
Confidence 79999975443
No 168
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.66 E-value=0.042 Score=42.36 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=31.5
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149 89 MEITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFS 127 (576)
Q Consensus 89 ~~k~~~L~~MGF-seeEas~AI~r~G~da~i~eLvD~I~A 127 (576)
.+++..|+.||| +++.+..|+..+|-| ++.-++.++.
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 358889999999 999999999999975 7777787765
No 169
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=94.66 E-value=0.048 Score=50.01 Aligned_cols=81 Identities=20% Similarity=0.079 Sum_probs=54.1
Q ss_pred chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 008149 429 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 508 (576)
Q Consensus 429 v~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~ 508 (576)
+...+..|... +.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+. .+.....+..+|+.++..
T Consensus 34 ~~~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~- 104 (218)
T 3ou2_A 34 APAALERLRAG-NIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTP- 104 (218)
T ss_dssp HHHHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCC-
T ss_pred HHHHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCC-
Confidence 33444444443 34569999999999999999998864 6789999998777654 111223345677765511
Q ss_pred hHHHhhhccCCccEEEec
Q 008149 509 KFESLIHKLGSIDFVICQ 526 (576)
Q Consensus 509 ~Ie~l~~~~g~~DLVIGG 526 (576)
.+.+|+|+..
T Consensus 105 --------~~~~D~v~~~ 114 (218)
T 3ou2_A 105 --------DRQWDAVFFA 114 (218)
T ss_dssp --------SSCEEEEEEE
T ss_pred --------CCceeEEEEe
Confidence 2468888864
No 170
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=94.64 E-value=0.059 Score=52.59 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||+.||.|.+.+.+.+. |-. ..|+++|+++.+.+..+.+....+. ....+..+|+.+.-. .+.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~ 181 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD---------EKD 181 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS---------CCS
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc---------CCc
Confidence 4678999999999999988876 421 2478999999998888876644321 111234566654311 146
Q ss_pred ccEEEecCCCC
Q 008149 520 IDFVICQNSVP 530 (576)
Q Consensus 520 ~DLVIGGpPCQ 530 (576)
+|+|+..+|+.
T Consensus 182 ~D~V~~~~~~~ 192 (277)
T 1o54_A 182 VDALFLDVPDP 192 (277)
T ss_dssp EEEEEECCSCG
T ss_pred cCEEEECCcCH
Confidence 99999988765
No 171
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=94.60 E-value=0.015 Score=63.55 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=51.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
..+++|||+=||.|-++..|.++|.. |.+||.++.+..+-+.+-...+.....+..+|+. ++... ..-+.|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~-----~~~~~-~~~~~f 135 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEENPDFAAEFRVGRIE-----EVIAA-LEEGEF 135 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHH-----HHHHH-CCTTSC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHH-----HHhhh-ccCCCc
Confidence 35689999999999999999999984 7899999999888776543322111112233333 33110 112579
Q ss_pred cEEEec
Q 008149 521 DFVICQ 526 (576)
Q Consensus 521 DLVIGG 526 (576)
|+|++-
T Consensus 136 D~v~~~ 141 (569)
T 4azs_A 136 DLAIGL 141 (569)
T ss_dssp SEEEEE
T ss_pred cEEEEC
Confidence 999863
No 172
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.59 E-value=0.038 Score=46.77 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=34.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|+.|||++++|..|+..|+. .++.=+++|+..+
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~ 68 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence 35788999999999999999999954 6888899999876
No 173
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=94.57 E-value=0.027 Score=55.88 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCH-------HHHHHHHHHhhhcCCCC-CccccccccccChhhHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~-------~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l 513 (576)
.+.+|||++||.|.+++.|.+.|.+ |+++|+++ .+.+..+.+....+... ..++.+|+.++. ..+
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~ 155 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL 155 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence 3578999999999999999888853 78999999 66655544322111001 123445554431 111
Q ss_pred hhccCCccEEEecCCC
Q 008149 514 IHKLGSIDFVICQNSV 529 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPC 529 (576)
....+.||+|+--||=
T Consensus 156 ~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHHCCCSEEEECCCC
T ss_pred hccCCCccEEEECCCC
Confidence 1101479999987653
No 174
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=94.56 E-value=0.059 Score=49.53 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=51.3
Q ss_pred CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+|||+-||.|.+...+... +. .++++|+++.+....+.+....+.....+..+|+.++.. .+.+
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 133 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPF 133 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCE
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCc
Confidence 568999999999999888875 43 478999999998888876654432223345677765542 1479
Q ss_pred cEEEe
Q 008149 521 DFVIC 525 (576)
Q Consensus 521 DLVIG 525 (576)
|+|+.
T Consensus 134 D~i~~ 138 (207)
T 1jsx_A 134 DGVIS 138 (207)
T ss_dssp EEEEC
T ss_pred CEEEE
Confidence 99984
No 175
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=94.55 E-value=0.042 Score=51.74 Aligned_cols=77 Identities=17% Similarity=0.031 Sum_probs=53.7
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
.+|||+-||.|.+...|.+.|.. |+++|+++.+....+......+.. ...+..+|+.++..+ +.||+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~ 135 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL 135 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence 49999999999999999887753 789999999988887765321111 122456777765421 36899
Q ss_pred EEecCCCCCc
Q 008149 523 VICQNSVPQI 532 (576)
Q Consensus 523 VIGGpPCQ~F 532 (576)
|+.......+
T Consensus 136 v~~~~~l~~~ 145 (235)
T 3lcc_A 136 IFDYVFFCAI 145 (235)
T ss_dssp EEEESSTTTS
T ss_pred EEEChhhhcC
Confidence 9876544433
No 176
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=94.55 E-value=0.026 Score=54.18 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aG-i~~k~vvavEid~~a~~t~k~~~ 487 (576)
.+.+|||+.||.|.+.+.+.+.. ..-..|+++|+|+.+.+..+.+.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~ 97 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL 97 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence 45789999999999998887650 11235789999999988777544
No 177
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=94.45 E-value=0.084 Score=50.82 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=57.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
++.+.+|||+-||.|.+...+.+.+-. ..++++|+++......+......+.....+...|+.++... .+.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~ 105 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFE--------DSS 105 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSC--------TTC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCC--------CCC
Confidence 356789999999999999999887421 24789999999888777765443322333456777765421 257
Q ss_pred ccEEEecCCCCC
Q 008149 520 IDFVICQNSVPQ 531 (576)
Q Consensus 520 ~DLVIGGpPCQ~ 531 (576)
||+|+.....+.
T Consensus 106 fD~v~~~~~l~~ 117 (276)
T 3mgg_A 106 FDHIFVCFVLEH 117 (276)
T ss_dssp EEEEEEESCGGG
T ss_pred eeEEEEechhhh
Confidence 999997654443
No 178
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.44 E-value=0.036 Score=47.13 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=32.7
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
.+...+|+.|||+++.+.+|+.. +..+ ++.=+++|+..
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~-~n~n-~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKS-NNMN-LDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH-TTSC-HHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH-cCCC-HHHHHHHHHHC
Confidence 66889999999999999999955 5556 89999999963
No 179
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=94.44 E-value=0.089 Score=49.58 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||.|.+...+.+.+. .++++|+++...+..+.+....+. ....+..+|+.+... ..+.+
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 159 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF 159 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence 467899999999999998888754 478999999998888776644321 112234566655330 11479
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+..+|
T Consensus 160 D~v~~~~~ 167 (248)
T 2yvl_A 160 HAAFVDVR 167 (248)
T ss_dssp SEEEECSS
T ss_pred cEEEECCc
Confidence 99998666
No 180
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=94.43 E-value=0.077 Score=49.53 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=57.6
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+|||+-||.|+....+.++ |. .|+++|+++......+.++...+... ..++.+|+.+. +..+....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~ 130 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK 130 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence 3578999999999999998876 54 47899999999888888776543322 22455666542 22222211
Q ss_pred -CCccEEEecCCCCC
Q 008149 518 -GSIDFVICQNSVPQ 531 (576)
Q Consensus 518 -g~~DLVIGGpPCQ~ 531 (576)
+.||+|+-..+|..
T Consensus 131 ~~~fD~v~~d~~~~~ 145 (223)
T 3duw_A 131 YEPFDFIFIDADKQN 145 (223)
T ss_dssp CCCCSEEEECSCGGG
T ss_pred CCCcCEEEEcCCcHH
Confidence 56999998877664
No 181
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=94.42 E-value=0.07 Score=50.71 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=56.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+|||+-||.|.+...+...|. .++++|+++......+......+.....+..+|+.++.. .-+.|
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 88 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSF 88 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcE
Confidence 3467899999999999999988874 478999999988877766544332223345677766541 11479
Q ss_pred cEEEecCCCC
Q 008149 521 DFVICQNSVP 530 (576)
Q Consensus 521 DLVIGGpPCQ 530 (576)
|+|+......
T Consensus 89 D~v~~~~~l~ 98 (239)
T 1xxl_A 89 DIITCRYAAH 98 (239)
T ss_dssp EEEEEESCGG
T ss_pred EEEEECCchh
Confidence 9999765443
No 182
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.36 E-value=0.039 Score=55.28 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
.+-+|||+|||.|...+++.++|.+ ++++|+++.+..+.+.....
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence 4567999999999999999999964 78999999998887766543
No 183
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=94.34 E-value=0.088 Score=49.91 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t-n~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||+.||.|.+...+.+. |-. ..++++|+++...+..+.+.... +.....+..+|+.+.. +. .+.
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~~-----~~~ 166 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---LE-----EAA 166 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---CC-----TTC
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---CC-----CCC
Confidence 4678999999999999998887 411 24789999999988888766443 2122234567776552 11 147
Q ss_pred ccEEEecCCCC
Q 008149 520 IDFVICQNSVP 530 (576)
Q Consensus 520 ~DLVIGGpPCQ 530 (576)
+|+|+..+|+.
T Consensus 167 ~D~v~~~~~~~ 177 (258)
T 2pwy_A 167 YDGVALDLMEP 177 (258)
T ss_dssp EEEEEEESSCG
T ss_pred cCEEEECCcCH
Confidence 99999877654
No 184
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=94.33 E-value=0.086 Score=51.56 Aligned_cols=76 Identities=17% Similarity=0.081 Sum_probs=52.9
Q ss_pred CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~t-n~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
..+.+|||+.||.|++...+.+. +. .|+++|+++...+..+.+.... +.....+..+|+.+.-.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--------- 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--------- 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---------
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc---------
Confidence 34678999999999999988876 44 4789999999988887766433 21122244566654211
Q ss_pred cCCccEEEecCC
Q 008149 517 LGSIDFVICQNS 528 (576)
Q Consensus 517 ~g~~DLVIGGpP 528 (576)
.+.||+|+...|
T Consensus 177 ~~~fD~Vi~~~~ 188 (275)
T 1yb2_A 177 DQMYDAVIADIP 188 (275)
T ss_dssp SCCEEEEEECCS
T ss_pred CCCccEEEEcCc
Confidence 146999998655
No 185
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=94.29 E-value=0.12 Score=51.06 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeC-CHHHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEi-d~~a~~t~k~~~ 487 (576)
.+.+||||.||.|.+++.+.+.|. ..|+++|+ ++.+....+.+.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI 123 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence 456899999999999999999885 35899999 899988888765
No 186
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=94.28 E-value=0.053 Score=57.33 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChhHHHHHHcC------------CceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT 507 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aG------------i~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~ 507 (576)
.+.+|+|..||.||+.+.+.+.- +....++++|+++.+.++.+.+...++.. ...+..+|......
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 35789999999999988775420 01134789999999988877654333221 22345566543321
Q ss_pred hhHHHhhhccCCccEEEecCCCCCcc
Q 008149 508 KKFESLIHKLGSIDFVICQNSVPQIP 533 (576)
Q Consensus 508 ~~Ie~l~~~~g~~DLVIGGpPCQ~FS 533 (576)
.+.||+|++-||.....
T Consensus 251 ---------~~~fD~Iv~NPPf~~~~ 267 (445)
T 2okc_A 251 ---------STLVDVILANPPFGTRP 267 (445)
T ss_dssp ---------SSCEEEEEECCCSSCCC
T ss_pred ---------cCCcCEEEECCCCCCcc
Confidence 24799999999987654
No 187
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=94.27 E-value=0.061 Score=50.34 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=54.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc------------CCCCCccccccccccChh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK 508 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t------------n~~g~l~~~~DI~~lt~~ 508 (576)
+.+.+|||+=||.|....-|.+.|.+ |+++|+++.+.+..+...... ......+..+|+.++...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 45689999999999999999999974 789999999988776542210 012233567899888743
Q ss_pred hHHHhhhccCCccEEEe
Q 008149 509 KFESLIHKLGSIDFVIC 525 (576)
Q Consensus 509 ~Ie~l~~~~g~~DLVIG 525 (576)
.. +.||+|+.
T Consensus 98 ~~-------~~fD~v~~ 107 (203)
T 1pjz_A 98 DI-------GHCAAFYD 107 (203)
T ss_dssp HH-------HSEEEEEE
T ss_pred cC-------CCEEEEEE
Confidence 21 36899985
No 188
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=94.22 E-value=0.065 Score=49.04 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=51.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+.+|||+-||.|.+...|.+.|.+ ++++|+++......+... +...+..+|+.++.. .-+.||+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~ 105 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG 105 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence 678999999999999999999874 688999999887776542 223356677776531 1257999
Q ss_pred EEecC
Q 008149 523 VICQN 527 (576)
Q Consensus 523 VIGGp 527 (576)
|+...
T Consensus 106 v~~~~ 110 (203)
T 3h2b_A 106 LLAWY 110 (203)
T ss_dssp EEEES
T ss_pred EEehh
Confidence 99754
No 189
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=94.20 E-value=0.099 Score=51.33 Aligned_cols=54 Identities=22% Similarity=0.127 Sum_probs=43.9
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149 436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 490 (576)
Q Consensus 436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t 490 (576)
+.++.+.+-+|+|+=||.|-+.+.+.+.|-. ..|+|+|+++.+...-+.+-..+
T Consensus 9 l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~ 62 (225)
T 3kr9_A 9 VASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAH 62 (225)
T ss_dssp HHTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence 3445566789999999999999999998843 45899999999998888776544
No 190
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=94.18 E-value=0.068 Score=50.03 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=56.8
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+-||.|.+...+.+. |. .++++|+++......+....... ...+..+|+.++... +
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------~ 108 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------E 108 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------C
Confidence 45689999999999999999887 54 47899999998888776543221 233456777766531 4
Q ss_pred CccEEEecCCCCCc
Q 008149 519 SIDFVICQNSVPQI 532 (576)
Q Consensus 519 ~~DLVIGGpPCQ~F 532 (576)
.+|+|+......-+
T Consensus 109 ~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 109 KYDMVVSALSIHHL 122 (234)
T ss_dssp CEEEEEEESCGGGS
T ss_pred CceEEEEeCccccC
Confidence 79999987654444
No 191
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=94.18 E-value=0.086 Score=49.89 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=54.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+.+|||+-||.|.+...+.+.|. .|+++|+++......+... ........+..+|+.++.. .-+.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~ 104 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES 104 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence 34568999999999999999988875 3789999999888777654 1112223345677766541 1146
Q ss_pred ccEEEecCC
Q 008149 520 IDFVICQNS 528 (576)
Q Consensus 520 ~DLVIGGpP 528 (576)
||+|+....
T Consensus 105 fD~v~~~~~ 113 (263)
T 2yqz_A 105 VHGVIVVHL 113 (263)
T ss_dssp EEEEEEESC
T ss_pred eeEEEECCc
Confidence 999997654
No 192
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=94.15 E-value=0.063 Score=60.62 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChhHHHHHHcC------Cc-----------------------------------eeeEEEeeCCHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR 480 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aG------i~-----------------------------------~k~vvavEid~~a~ 480 (576)
.+.+++|.|||.|++.+.+...+ +. -..++++|+|+.+.
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45789999999999976554432 10 02488999999999
Q ss_pred HHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149 481 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 481 ~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC 529 (576)
++-+.+....+... ..+..+|+.++.... ..+.+|+|+.-||=
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence 98888776553322 124567777664211 11379999999884
No 193
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=94.11 E-value=0.081 Score=47.01 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=52.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+...+.+.. +-..|+++|+++...+..+.+....+....+...+|..+ .+. ...+.+|
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D 96 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD 96 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence 45789999999999999887762 113478999999988888776544332212233445432 111 1116799
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|+.+.+...
T Consensus 97 ~i~~~~~~~~ 106 (178)
T 3hm2_A 97 VIFIGGGLTA 106 (178)
T ss_dssp EEEECC-TTC
T ss_pred EEEECCcccH
Confidence 9997766544
No 194
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=94.09 E-value=0.046 Score=52.18 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+.+.+..+.-. ..|+++|+++.+....+.+....+.....++.+|+.++... ....+.||
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~fD 143 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRESYD 143 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccCCcc
Confidence 4678999999999888877743211 23789999999888888766544332233456676554310 00125799
Q ss_pred EEEecC
Q 008149 522 FVICQN 527 (576)
Q Consensus 522 LVIGGp 527 (576)
+|+...
T Consensus 144 ~V~~~~ 149 (240)
T 1xdz_A 144 IVTARA 149 (240)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999654
No 195
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=94.08 E-value=0.044 Score=60.03 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=62.1
Q ss_pred Hhhhhhccccchhh-hccccccCCCCCcccccCCCCChhHHHHHHc----CC-------------ceeeEEEeeCCHHHH
Q 008149 419 SLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNR 480 (576)
Q Consensus 419 ~Lg~sf~vdtv~~~-lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a----Gi-------------~~k~vvavEid~~a~ 480 (576)
..|..|+...+... ...+.+ ..+.+|+|..||.|||-+.+.+. +- ....++++|+++.+.
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~ 224 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 224 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence 34555555544333 333332 23689999999999998776432 10 112589999999998
Q ss_pred HHHHHHhhhcCCCC-----CccccccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 008149 481 RILKRWWESSGQTG-----ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 533 (576)
Q Consensus 481 ~t~k~~~~~tn~~g-----~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 533 (576)
++.+.+..-++... ..+.++|.-... ....+.||+|++-||.....
T Consensus 225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~ 275 (541)
T 2ar0_A 225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-------GENLPKAHIVATNPPFGSAA 275 (541)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-------HHTSCCEEEEEECCCCTTCS
T ss_pred HHHHHHHHHhCCCccccccCCeEeCCCcccc-------cccccCCeEEEECCCccccc
Confidence 88776543222221 223445532211 11236899999999987655
No 196
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.08 E-value=0.055 Score=45.97 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|+.|||+++.|..||..++.+ ++.-+++|+.-.
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCc
Confidence 568889999999999999999766654 888899999866
No 197
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=94.07 E-value=0.043 Score=54.49 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=54.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----------CCCCccccccccccChhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK 509 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn-----------~~g~l~~~~DI~~lt~~~ 509 (576)
+.+.+||+|.||.|++...+.+.|. ..|.+||+|+...+..+.++ ..+ .+...++.+|..+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~---- 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF---- 146 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence 4567899999999999998887754 45889999999999888876 221 11122344555332
Q ss_pred HHHhhhccCCccEEEecCCC
Q 008149 510 FESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 510 Ie~l~~~~g~~DLVIGGpPC 529 (576)
+. . .+.+|+|+.-+|+
T Consensus 147 l~---~-~~~fD~Ii~d~~~ 162 (281)
T 1mjf_A 147 IK---N-NRGFDVIIADSTD 162 (281)
T ss_dssp HH---H-CCCEEEEEEECCC
T ss_pred hc---c-cCCeeEEEECCCC
Confidence 11 1 3579999998876
No 198
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=94.06 E-value=0.14 Score=47.54 Aligned_cols=79 Identities=8% Similarity=0.039 Sum_probs=53.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCccccccccccChhhHHHhhhc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-----g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
.+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+......+.. ...+..+|+..+.. .
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~ 99 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R 99 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence 3568999999999999999987632 35789999999988888765432211 12244566644332 1
Q ss_pred cCCccEEEecCCC
Q 008149 517 LGSIDFVICQNSV 529 (576)
Q Consensus 517 ~g~~DLVIGGpPC 529 (576)
.+.||+|+.....
T Consensus 100 ~~~fD~v~~~~~l 112 (217)
T 3jwh_A 100 FHGYDAATVIEVI 112 (217)
T ss_dssp GCSCSEEEEESCG
T ss_pred CCCcCEEeeHHHH
Confidence 2578988865443
No 199
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=94.05 E-value=0.089 Score=54.47 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=53.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+||||.||.|.+++.+.++|. +-|+++|++ ......+.+....+... ..++.+|+.++... +.+
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~ 130 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV 130 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence 467899999999999999999987 358899999 55555555544333222 23567888776521 579
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+..+
T Consensus 131 D~Iv~~~ 137 (376)
T 3r0q_C 131 DVIISEW 137 (376)
T ss_dssp EEEEECC
T ss_pred eEEEEcC
Confidence 9999744
No 200
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=94.04 E-value=0.079 Score=41.29 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=29.4
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
++...+|++|||+.+.|.+|++.-.. | ++.-..+|+.
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~n-n-ve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQN-N-VEVARSILRE 48 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-C-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHH
Confidence 36889999999999999999999655 4 6665555554
No 201
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=94.02 E-value=0.065 Score=49.86 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=55.3
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh
Q 008149 430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK 509 (576)
Q Consensus 430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~ 509 (576)
.+.+..+.... .+.+|||+=||.|.+...|.+.|.+ |.++|+++......+..+.. ...++.+|+.++..
T Consensus 31 ~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~-- 100 (250)
T 2p7i_A 31 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL-- 100 (250)
T ss_dssp HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC--
T ss_pred HHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc--
Confidence 34445555444 4568999999999999999988863 78899999988877765431 22345567765521
Q ss_pred HHHhhhccCCccEEEecC
Q 008149 510 FESLIHKLGSIDFVICQN 527 (576)
Q Consensus 510 Ie~l~~~~g~~DLVIGGp 527 (576)
-+.||+|+...
T Consensus 101 -------~~~fD~v~~~~ 111 (250)
T 2p7i_A 101 -------PRRYDNIVLTH 111 (250)
T ss_dssp -------SSCEEEEEEES
T ss_pred -------CCcccEEEEhh
Confidence 14678887543
No 202
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=94.02 E-value=0.076 Score=52.12 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh-----------------cCCCCCccccccccc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA 504 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~-----------------tn~~g~l~~~~DI~~ 504 (576)
.+.+|||+=||.|....-|.+.|++ |++||+++.+.+..+..... .......+..+|+.+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4679999999999999999999984 78999999998877543210 001122345678877
Q ss_pred cChhhHHHhhhccCCccEEEe
Q 008149 505 LTTKKFESLIHKLGSIDFVIC 525 (576)
Q Consensus 505 lt~~~Ie~l~~~~g~~DLVIG 525 (576)
+.... .+.||+|+.
T Consensus 145 l~~~~-------~~~FD~V~~ 158 (252)
T 2gb4_A 145 LPRAN-------IGKFDRIWD 158 (252)
T ss_dssp GGGGC-------CCCEEEEEE
T ss_pred CCccc-------CCCEEEEEE
Confidence 65321 257999984
No 203
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=93.99 E-value=0.045 Score=51.88 Aligned_cols=76 Identities=20% Similarity=0.111 Sum_probs=52.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...|.+.+. ..++++|+++...+..+......+.....+...|+.++.. ..+.||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD 148 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD 148 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence 468999999999999998877763 3578999999998888776543211111234566655542 124699
Q ss_pred EEEecC
Q 008149 522 FVICQN 527 (576)
Q Consensus 522 LVIGGp 527 (576)
+|+...
T Consensus 149 ~v~~~~ 154 (241)
T 2ex4_A 149 VIWIQW 154 (241)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 998653
No 204
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=93.95 E-value=0.065 Score=51.70 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=54.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
.+.+.+|||+-||.|++...+.+.|. ..++++|+++......+......+.. ...+..+|+.++... ..+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~ 132 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGK 132 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSS
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCC
Confidence 34678999999999999999988885 34789999999988887765433211 122456777665310 124
Q ss_pred CccEEEecC
Q 008149 519 SIDFVICQN 527 (576)
Q Consensus 519 ~~DLVIGGp 527 (576)
.||+|+...
T Consensus 133 ~fD~v~~~~ 141 (298)
T 1ri5_A 133 EFDVISSQF 141 (298)
T ss_dssp CEEEEEEES
T ss_pred CcCEEEECc
Confidence 688888654
No 205
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=93.91 E-value=0.031 Score=55.03 Aligned_cols=98 Identities=19% Similarity=0.080 Sum_probs=62.5
Q ss_pred HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149 418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 495 (576)
Q Consensus 418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~ 495 (576)
|.+|-.|-+| .+..++..+.. ..+-+|||+.||.|.++..|.+.|- .-|+++|+|+.....++.. .....
T Consensus 7 k~~GQnfl~d~~i~~~iv~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v 78 (249)
T 3ftd_A 7 KSFGQHLLVSEGVLKKIAEELNI--EEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERL 78 (249)
T ss_dssp -CCCSSCEECHHHHHHHHHHTTC--CTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTE
T ss_pred CcccccccCCHHHHHHHHHhcCC--CCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCe
Confidence 3445555333 33333333321 2356899999999999999988863 3478999999998877643 11222
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149 496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
.++.+|+.+++-.++ .+ ..+|+|-+|=+
T Consensus 79 ~~i~~D~~~~~~~~~------~~-~~~vv~NlPy~ 106 (249)
T 3ftd_A 79 EVINEDASKFPFCSL------GK-ELKVVGNLPYN 106 (249)
T ss_dssp EEECSCTTTCCGGGS------CS-SEEEEEECCTT
T ss_pred EEEEcchhhCChhHc------cC-CcEEEEECchh
Confidence 366789988875432 12 34788877754
No 206
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=93.89 E-value=0.053 Score=50.13 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=53.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...|.+.|. .|+++|+++.+....+...... ....+..+|+.++.. .+.||
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD 116 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD 116 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence 357899999999999999998874 4789999999988887654322 122356678877652 25799
Q ss_pred EEEecC
Q 008149 522 FVICQN 527 (576)
Q Consensus 522 LVIGGp 527 (576)
+|+...
T Consensus 117 ~v~~~~ 122 (216)
T 3ofk_A 117 LIVVAE 122 (216)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999753
No 207
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=93.89 E-value=0.11 Score=49.72 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=61.7
Q ss_pred ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 008149 425 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 504 (576)
Q Consensus 425 ~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~ 504 (576)
+...+..++..+.. ..+.+|||+-||.|.+...|.+.+. .|+++|+++......+......+.+...+..+|+.+
T Consensus 22 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 22 KGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp -CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred CHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 44445555555432 2467999999999999999988874 478999999988777766543322223356678876
Q ss_pred cChhhHHHhhhccCCccEEEecCCCC
Q 008149 505 LTTKKFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 505 lt~~~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
+.-. -+.||+|+...-.+
T Consensus 97 l~~~--------~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 97 MPFT--------DERFHIVTCRIAAH 114 (260)
T ss_dssp CCSC--------TTCEEEEEEESCGG
T ss_pred CCCC--------CCCEEEEEEhhhhH
Confidence 5411 14799999765443
No 208
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=93.87 E-value=0.068 Score=51.13 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=56.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+.+.+.+.+-. ..|++||+++......+.+....+.....++.+|+.++-...+ ..+.+|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-----~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-----PDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-----CTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-----CCCChh
Confidence 3568999999999999988876533 2478999999988777765543332223345566655311111 126799
Q ss_pred EEEecCCCCCc
Q 008149 522 FVICQNSVPQI 532 (576)
Q Consensus 522 LVIGGpPCQ~F 532 (576)
+|+--+|+.-.
T Consensus 108 ~v~~~~~~p~~ 118 (218)
T 3dxy_A 108 MVQLFFPDPWH 118 (218)
T ss_dssp EEEEESCCCCC
T ss_pred eEEEeCCCCcc
Confidence 99988776533
No 209
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=93.86 E-value=0.065 Score=52.36 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+|||+-||.|...+.+..+.=. ..|+++|+++.+....+.+....+.....++.+|+.++.... ...+.|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence 45789999999999888887765211 247899999999998887765443322334556665543210 012579
Q ss_pred cEEEe
Q 008149 521 DFVIC 525 (576)
Q Consensus 521 DLVIG 525 (576)
|+|+.
T Consensus 153 D~I~s 157 (249)
T 3g89_A 153 ARAVA 157 (249)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99995
No 210
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=93.86 E-value=0.13 Score=47.82 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=38.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
.+.+|||+-||.|.+...+.+.|-. ..++++|+++.+....+....
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence 3578999999999999999987732 357899999999888877654
No 211
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=93.83 E-value=0.12 Score=47.72 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...+.+.+-+-..|+++|+++......+.+....+.....+..+|+...-. ..+.+|
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPYD 148 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCee
Confidence 467999999999999988877652112478999999988877776544322222244566532211 125799
Q ss_pred EEEecCCCCCcc
Q 008149 522 FVICQNSVPQIP 533 (576)
Q Consensus 522 LVIGGpPCQ~FS 533 (576)
+|+...++..+.
T Consensus 149 ~v~~~~~~~~~~ 160 (215)
T 2yxe_A 149 RIYTTAAGPKIP 160 (215)
T ss_dssp EEEESSBBSSCC
T ss_pred EEEECCchHHHH
Confidence 999887776543
No 212
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=93.83 E-value=0.071 Score=53.28 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=55.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+||||-||.|.+++.|.+.|.+ |.++|+++...+..+...... ....|+.+++.+.... ..+.|
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~---~~~~f 111 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKE---LAGHF 111 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGG---GTTCC
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccc---cCCCc
Confidence 34679999999999999999999864 789999999988887653211 2345665554310000 12579
Q ss_pred cEEEecCCCCCcc
Q 008149 521 DFVICQNSVPQIP 533 (576)
Q Consensus 521 DLVIGGpPCQ~FS 533 (576)
|+|+.....+.|.
T Consensus 112 D~Vv~~~~l~~~~ 124 (261)
T 3iv6_A 112 DFVLNDRLINRFT 124 (261)
T ss_dssp SEEEEESCGGGSC
T ss_pred cEEEEhhhhHhCC
Confidence 9999876555443
No 213
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=93.82 E-value=0.1 Score=49.25 Aligned_cols=72 Identities=8% Similarity=-0.012 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccccccc-ccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~-~lt~~~Ie~l~~~~g~ 519 (576)
+.+.+|||+-||.|.+...+.+.|. .|+++|+++......+.. .+...+..+|+. .+... .-+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~-------~~~~ 111 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAG-------LGAP 111 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTT-------CCCC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCc-------CCCC
Confidence 4578999999999999999999886 378999999988877654 222335677874 33210 0257
Q ss_pred ccEEEecC
Q 008149 520 IDFVICQN 527 (576)
Q Consensus 520 ~DLVIGGp 527 (576)
||+|+...
T Consensus 112 fD~v~~~~ 119 (226)
T 3m33_A 112 FGLIVSRR 119 (226)
T ss_dssp EEEEEEES
T ss_pred EEEEEeCC
Confidence 99999774
No 214
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=93.76 E-value=0.079 Score=49.55 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=52.4
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149 438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
..++.+.+|||+-||.|.+...+.+. . .++++|+++...+..+......+ ....+...|+.++.. .
T Consensus 29 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~ 94 (243)
T 3d2l_A 29 EQVEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------P 94 (243)
T ss_dssp HHSCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------S
T ss_pred HHcCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------C
Confidence 33445689999999999999888777 3 47899999998888777654332 222345677766532 1
Q ss_pred CCccEEEec
Q 008149 518 GSIDFVICQ 526 (576)
Q Consensus 518 g~~DLVIGG 526 (576)
+.+|+|+..
T Consensus 95 ~~fD~v~~~ 103 (243)
T 3d2l_A 95 EPVDAITIL 103 (243)
T ss_dssp SCEEEEEEC
T ss_pred CCcCEEEEe
Confidence 468888854
No 215
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=93.76 E-value=0.055 Score=54.33 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t----n~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
+.+.+||+|.||.|++...+.+. +. ..|.+||+|+...+..+.++... +.+...++.+|..+.-. .
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~ 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence 35679999999999999888776 33 45889999999999888876421 11222345566544211 1
Q ss_pred ccCCccEEEecCCCC
Q 008149 516 KLGSIDFVICQNSVP 530 (576)
Q Consensus 516 ~~g~~DLVIGGpPCQ 530 (576)
..+.+|+|+..+||.
T Consensus 160 ~~~~fD~Ii~d~~~~ 174 (296)
T 1inl_A 160 FKNEFDVIIIDSTDP 174 (296)
T ss_dssp CSSCEEEEEEEC---
T ss_pred CCCCceEEEEcCCCc
Confidence 125799999888774
No 216
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=93.70 E-value=0.17 Score=47.33 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=51.2
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||.|.+...+.+. |-. ..|+++|+++.+.+..+.+-... ....+..+|+.+... +. ...+.+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~--~~---~~~~~~ 144 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEE--YR---ALVPKV 144 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGG--GT---TTCCCE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcch--hh---cccCCc
Confidence 4678999999999999988765 421 24789999998766655543221 223345677765321 10 012479
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+...|
T Consensus 145 D~v~~~~~ 152 (227)
T 1g8a_A 145 DVIFEDVA 152 (227)
T ss_dssp EEEEECCC
T ss_pred eEEEECCC
Confidence 99997766
No 217
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.63 E-value=0.071 Score=41.57 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=32.1
Q ss_pred hHHHHHHHhcCCCHHH-HHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQ-VSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeE-as~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|..|||++++ +..||.+++-| |+.-+|.++...
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~ 49 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 4588899999998877 59999999976 777788888654
No 218
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=93.61 E-value=0.13 Score=48.68 Aligned_cols=81 Identities=23% Similarity=0.271 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+.||.|.+...+.+.+- ..|+++|+++...+..+.+....+.....+..+|+. .. +. ..+.+|
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~~----~~~~fD 160 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---FP----PKAPYD 160 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---CG----GGCCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---CC----CCCCcc
Confidence 457899999999999988877652 247899999998888777654432222223455651 11 11 123599
Q ss_pred EEEecCCCCCc
Q 008149 522 FVICQNSVPQI 532 (576)
Q Consensus 522 LVIGGpPCQ~F 532 (576)
+|+...++..+
T Consensus 161 ~Ii~~~~~~~~ 171 (235)
T 1jg1_A 161 VIIVTAGAPKI 171 (235)
T ss_dssp EEEECSBBSSC
T ss_pred EEEECCcHHHH
Confidence 99988776654
No 219
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=93.61 E-value=0.08 Score=53.43 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
+++-+||+|-||.|++...+.+.. ...-|.+||||+...++.+.++...+ .+...++.+|..+.-..
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~------- 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------- 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C-------
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhh-------
Confidence 456799999999999998887752 23568899999999999888765321 12233566777654211
Q ss_pred ccCCccEEEecCCC
Q 008149 516 KLGSIDFVICQNSV 529 (576)
Q Consensus 516 ~~g~~DLVIGGpPC 529 (576)
..+.+|+||.-+|.
T Consensus 154 ~~~~fDvIi~D~~~ 167 (294)
T 3adn_A 154 TSQTFDVIISDCTD 167 (294)
T ss_dssp CCCCEEEEEECC--
T ss_pred cCCCccEEEECCCC
Confidence 12579999986553
No 220
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=93.57 E-value=0.12 Score=49.27 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|...+.|.+++- -..|+++|+++...+..+.++...+.. ...++.+|+.+.-.+ .+ .+.|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence 357899999999999999988432 235789999999998888887655432 223556777654220 11 2579
Q ss_pred cEEEecCCCCCc
Q 008149 521 DFVICQNSVPQI 532 (576)
Q Consensus 521 DLVIGGpPCQ~F 532 (576)
|+|+-..++...
T Consensus 144 D~V~~~~~~~~~ 155 (232)
T 3ntv_A 144 DMIFIDAAKAQS 155 (232)
T ss_dssp EEEEEETTSSSH
T ss_pred cEEEEcCcHHHH
Confidence 999987776653
No 221
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=93.56 E-value=0.15 Score=50.04 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+-||.|++...+.+. |. .|+++|+++......+......+.. ...+..+|+.++ .+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~ 136 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE 136 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence 34679999999999999988876 85 3789999999888887766544322 122556777665 15
Q ss_pred CccEEEecC
Q 008149 519 SIDFVICQN 527 (576)
Q Consensus 519 ~~DLVIGGp 527 (576)
.||+|+...
T Consensus 137 ~fD~v~~~~ 145 (302)
T 3hem_A 137 PVDRIVSLG 145 (302)
T ss_dssp CCSEEEEES
T ss_pred CccEEEEcc
Confidence 789998654
No 222
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=93.48 E-value=0.13 Score=48.57 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+.+.+.+..=. ..++++|+++.+....+.+....+.....++.+|+.++. ..+ ..+.+|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~~d 110 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGEVK 110 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTSCC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCCcC
Confidence 3578999999999999998876211 247899999999887776654433222335567777642 111 125689
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
.|+-.+|+.
T Consensus 111 ~v~~~~~~p 119 (213)
T 2fca_A 111 RVYLNFSDP 119 (213)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 998777654
No 223
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=93.48 E-value=0.068 Score=41.68 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=26.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCC
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTP 117 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~ 117 (576)
++++..|+.|||+.++|..|+..++.|..
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve 40 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVE 40 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHH
Confidence 46899999999999999999999999843
No 224
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=93.46 E-value=0.16 Score=47.33 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 008149 443 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL- 517 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~- 517 (576)
+.+|||+-||.|+..+.+.+. +. .|+++|+++......+.++...+... ..+..+|+.+. +..+....
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~ 137 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAGQ 137 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTTC
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhccC
Confidence 468999999999999988875 43 47899999999888888876543322 22445665432 21111111
Q ss_pred -CCccEEEecCCCC
Q 008149 518 -GSIDFVICQNSVP 530 (576)
Q Consensus 518 -g~~DLVIGGpPCQ 530 (576)
+.||+|+--.+..
T Consensus 138 ~~~fD~v~~~~~~~ 151 (225)
T 3tr6_A 138 AWQYDLIYIDADKA 151 (225)
T ss_dssp TTCEEEEEECSCGG
T ss_pred CCCccEEEECCCHH
Confidence 5899999665543
No 225
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=93.45 E-value=0.069 Score=50.34 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=59.4
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHH-cCC-----ceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccc
Q 008149 430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQ 498 (576)
Q Consensus 430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-aGi-----~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~ 498 (576)
+..+..|......+.+|||+-||.|.+...+.+ .|. . ..|+++|+++...+..+.+....+ .....+.
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 150 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 333444543344578999999999999888766 341 0 147899999998877766543221 1112244
Q ss_pred cccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149 499 IEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 532 (576)
Q Consensus 499 ~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 532 (576)
.+|+.+--. ..+.||+|+...++..+
T Consensus 151 ~~d~~~~~~--------~~~~fD~I~~~~~~~~~ 176 (227)
T 1r18_A 151 EGDGRKGYP--------PNAPYNAIHVGAAAPDT 176 (227)
T ss_dssp ESCGGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred ECCcccCCC--------cCCCccEEEECCchHHH
Confidence 566654111 12579999998888765
No 226
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=93.40 E-value=0.15 Score=50.19 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=43.4
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149 437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 490 (576)
Q Consensus 437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t 490 (576)
.++.+.+-+|+|+=||.|-+.+.+.+.|. ...|+|+|+++.+...-+.+-...
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~ 68 (230)
T 3lec_A 16 ANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEH 68 (230)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 34455678999999999999999999884 346899999999998888776544
No 227
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=93.40 E-value=0.15 Score=49.33 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=53.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-C--CCCCccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t-n--~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+|||+.||.|.+...+.+. |-. ..|+++|+++...+..+.+.... + .....+..+|+.++.. ..
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~ 169 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD 169 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence 4678999999999999988874 311 24789999999888877765432 1 1122345677766531 12
Q ss_pred CCccEEEecCCC
Q 008149 518 GSIDFVICQNSV 529 (576)
Q Consensus 518 g~~DLVIGGpPC 529 (576)
+.+|+|+...|.
T Consensus 170 ~~~D~v~~~~~~ 181 (280)
T 1i9g_A 170 GSVDRAVLDMLA 181 (280)
T ss_dssp TCEEEEEEESSC
T ss_pred CceeEEEECCcC
Confidence 479999987663
No 228
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=93.39 E-value=0.081 Score=50.13 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...|.+.+. ..|+++|+++...+..+.+....+ ....+..+|+.++.. .+ .-+.||
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~----~~--~~~~fD 130 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP----TL--PDGHFD 130 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----GS--CTTCEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc----cc--CCCceE
Confidence 467899999999999999977765 358899999999888877654321 122234566654311 00 115799
Q ss_pred EEEe
Q 008149 522 FVIC 525 (576)
Q Consensus 522 LVIG 525 (576)
+|+.
T Consensus 131 ~V~~ 134 (236)
T 1zx0_A 131 GILY 134 (236)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 229
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=93.37 E-value=0.12 Score=38.99 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=29.0
Q ss_pred hHHHHHHHhcCCCH-HHHHHHHHHhCCCCChhhhhHhHhh
Q 008149 89 MEITLQLLEMGFSE-NQVSLAIEKFGSKTPISELADKIFS 127 (576)
Q Consensus 89 ~~k~~~L~~MGFse-eEas~AI~r~G~da~i~eLvD~I~A 127 (576)
.+++..|++|||++ +.+..|+..++-| ++--||.++.
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence 36888999999975 5569999999976 6666777764
No 230
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=93.35 E-value=0.11 Score=51.14 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC---CCCccccccccccChhhHHHhhhccCC
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~---~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+-+||||-||.|.+...|.+.|.+ |+++|+++......+......+. ....++.+|+.++.. .+.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~ 150 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKR 150 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCC
T ss_pred CCcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCC
Confidence 348999999999999999999864 68999999998888776543210 122356788877642 257
Q ss_pred ccEEEe
Q 008149 520 IDFVIC 525 (576)
Q Consensus 520 ~DLVIG 525 (576)
||+|+.
T Consensus 151 fD~v~~ 156 (299)
T 3g2m_A 151 FGTVVI 156 (299)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 898874
No 231
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=93.33 E-value=0.17 Score=51.45 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=54.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-+||||-||.|.+...+.+.|-.. .|.++|+++.+....+.+....+.. ..+..+|+.+.. .+.||+
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~ 264 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM 264 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence 3589999999999999998887432 4789999999888887776543322 223455654321 257999
Q ss_pred EEecCCCC
Q 008149 523 VICQNSVP 530 (576)
Q Consensus 523 VIGGpPCQ 530 (576)
|+..+|..
T Consensus 265 Iv~~~~~~ 272 (343)
T 2pjd_A 265 IISNPPFH 272 (343)
T ss_dssp EEECCCCC
T ss_pred EEECCCcc
Confidence 99988865
No 232
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=93.33 E-value=0.16 Score=46.84 Aligned_cols=73 Identities=22% Similarity=0.145 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+.... ....+..+|+.++... +.||
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD 108 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID 108 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence 4678999999999999999998864 6899999998877766432 1233566788776421 5799
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
+|+......
T Consensus 109 ~v~~~~~l~ 117 (220)
T 3hnr_A 109 TIVSTYAFH 117 (220)
T ss_dssp EEEEESCGG
T ss_pred EEEECcchh
Confidence 999775443
No 233
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.30 E-value=0.091 Score=44.42 Aligned_cols=40 Identities=28% Similarity=0.304 Sum_probs=34.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|+.|||+++.|..|+-..|.. .++.=++.|+.-+
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~n~-n~e~A~ewL~~h~ 69 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTSNA-GVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence 457789999999999999999999864 6888899999865
No 234
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=93.28 E-value=0.078 Score=52.65 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=55.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t----n~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
+++.+||+|.||.|++...+.+. |. .-|.+||+|+...+..+.++... +.+...++.+|..+. +. .
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~---~ 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IA---K 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HH---T
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hh---h
Confidence 45689999999999999888766 43 45889999999999988876431 112223455665432 11 1
Q ss_pred ccCCccEEEecCCC
Q 008149 516 KLGSIDFVICQNSV 529 (576)
Q Consensus 516 ~~g~~DLVIGGpPC 529 (576)
..+.+|+|+..+|.
T Consensus 145 ~~~~fD~Ii~d~~~ 158 (275)
T 1iy9_A 145 SENQYDVIMVDSTE 158 (275)
T ss_dssp CCSCEEEEEESCSS
T ss_pred CCCCeeEEEECCCC
Confidence 12579999997765
No 235
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=93.25 E-value=0.17 Score=47.90 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=50.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.+...|.+. | . ..|+++|+++.+.+..+.+.... ....++.+|+.+... .....+.|
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-----~~~~~~~~ 144 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQE-----YANIVEKV 144 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGG-----GTTTSCCE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccc-----ccccCccE
Confidence 4678999999999999888765 5 2 35889999999887776653221 222344577765211 00001579
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+...
T Consensus 145 D~v~~~~ 151 (230)
T 1fbn_A 145 DVIYEDV 151 (230)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9999443
No 236
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=93.22 E-value=0.11 Score=39.14 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=31.5
Q ss_pred hhhhhHHHhcCCCC-hHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 16 ~s~~r~~li~MGFs-~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
..+...+|.+|||+ .+.+.+|++..+. | ++.=+|+|++
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~g-n-v~~Ave~L~~ 45 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGG-S-VQGALDSLLN 45 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-C-HHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-C-HHHHHHHHHc
Confidence 34577999999996 6778999999875 4 8888999984
No 237
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=93.21 E-value=0.072 Score=49.70 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=52.7
Q ss_pred ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149 434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l 513 (576)
..|+.+.+.+.+|||+-||.|.+...|.+.|. .+.++|+++......+.... ...+..+|+.++..
T Consensus 32 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~------ 97 (239)
T 3bxo_A 32 DLVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLP-----DATLHQGDMRDFRL------ 97 (239)
T ss_dssp HHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCT-----TCEEEECCTTTCCC------
T ss_pred HHHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCC-----CCEEEECCHHHccc------
Confidence 33444445678999999999999999988875 37889999998887765431 22345667765532
Q ss_pred hhccCCccEEEe
Q 008149 514 IHKLGSIDFVIC 525 (576)
Q Consensus 514 ~~~~g~~DLVIG 525 (576)
.+.+|+|+.
T Consensus 98 ---~~~~D~v~~ 106 (239)
T 3bxo_A 98 ---GRKFSAVVS 106 (239)
T ss_dssp ---SSCEEEEEE
T ss_pred ---CCCCcEEEE
Confidence 146788873
No 238
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=93.15 E-value=0.14 Score=52.29 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=52.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.++..+.++|. .-|+++|+++ .....+......+... ..++.+|+.++... .+.+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f 134 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELP--------VEKV 134 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS--------SSCE
T ss_pred CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCC--------CCce
Confidence 357899999999999999999986 3588999996 4444444443332222 23567888776321 2579
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+.-++
T Consensus 135 D~Iis~~~ 142 (349)
T 3q7e_A 135 DIIISEWM 142 (349)
T ss_dssp EEEEECCC
T ss_pred EEEEEccc
Confidence 99997543
No 239
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=93.12 E-value=0.11 Score=49.97 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=53.3
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+.... .. +...|+.++.. ..+
T Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~~-~~~~d~~~~~~--------~~~ 113 (260)
T 2avn_A 51 YLKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----KN-VVEAKAEDLPF--------PSG 113 (260)
T ss_dssp HCCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----SC-EEECCTTSCCS--------CTT
T ss_pred hcCCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----CC-EEECcHHHCCC--------CCC
Confidence 3345689999999999999999988863 7889999998877765421 12 56678776542 125
Q ss_pred CccEEEecCC
Q 008149 519 SIDFVICQNS 528 (576)
Q Consensus 519 ~~DLVIGGpP 528 (576)
.||+|+....
T Consensus 114 ~fD~v~~~~~ 123 (260)
T 2avn_A 114 AFEAVLALGD 123 (260)
T ss_dssp CEEEEEECSS
T ss_pred CEEEEEEcch
Confidence 7999996543
No 240
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=93.12 E-value=0.12 Score=48.75 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=57.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|++...+.+.. +-..|+++|+++...+..+.++...+... ..+..+|+.+.- .... ..+.|
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~~f 127 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYPLF 127 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSCCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCCCc
Confidence 35689999999999999888762 11247899999999888888775443221 223456665431 1110 12579
Q ss_pred cEEEecCCCCCc
Q 008149 521 DFVICQNSVPQI 532 (576)
Q Consensus 521 DLVIGGpPCQ~F 532 (576)
|+|+...||...
T Consensus 128 D~I~~~~~~~~~ 139 (233)
T 2gpy_A 128 DVLFIDAAKGQY 139 (233)
T ss_dssp EEEEEEGGGSCH
T ss_pred cEEEECCCHHHH
Confidence 999998888643
No 241
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=93.05 E-value=0.13 Score=48.62 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++......+...... ....+..+|+.++... -+.
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~ 120 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFP--------ENN 120 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCC--------TTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCC--------CCc
Confidence 34679999999999999998876 65 3789999999887776543211 2223456777765311 257
Q ss_pred ccEEEecCC
Q 008149 520 IDFVICQNS 528 (576)
Q Consensus 520 ~DLVIGGpP 528 (576)
||+|+....
T Consensus 121 fD~v~~~~~ 129 (266)
T 3ujc_A 121 FDLIYSRDA 129 (266)
T ss_dssp EEEEEEESC
T ss_pred EEEEeHHHH
Confidence 899987543
No 242
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.01 E-value=0.041 Score=41.64 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=31.1
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
+....|++|||++..|.+|+...| .| .+.=+++|++
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~-~n-~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACE-KN-ENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTT-SC-HHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-CC-HHHHHHHHHh
Confidence 467889999999999999999999 45 7788888884
No 243
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=92.96 E-value=0.19 Score=49.97 Aligned_cols=53 Identities=11% Similarity=-0.104 Sum_probs=43.2
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149 437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 490 (576)
Q Consensus 437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t 490 (576)
.++.+.+-+|+|+=||.|-+.+.+.+.|- ...|+|+|+++.+...-+.+-...
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~ 68 (244)
T 3gnl_A 16 ASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSS 68 (244)
T ss_dssp HTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 34455678999999999999999999884 346899999999998888776544
No 244
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=92.96 E-value=0.12 Score=54.35 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=56.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-----C---CCccccccccccChhhHHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-----T---GELVQIEDIQALTTKKFES 512 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-----~---g~l~~~~DI~~lt~~~Ie~ 512 (576)
|++-+||+|++|.||+..-+.+.+. .-|..||||+...+..+.|+...+. + ...++.+|..+.- +.
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L----~~ 260 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVL----KR 260 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHH----HH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHH----Hh
Confidence 5678999999999999887777764 5688999999999999988753221 0 1224455555421 11
Q ss_pred hhhccCCccEEEecCCC
Q 008149 513 LIHKLGSIDFVICQNSV 529 (576)
Q Consensus 513 l~~~~g~~DLVIGGpPC 529 (576)
+....+.+|+||--+|=
T Consensus 261 ~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 261 YAKEGREFDYVINDLTA 277 (364)
T ss_dssp HHHHTCCEEEEEEECCS
T ss_pred hhccCCCceEEEECCCC
Confidence 11123579999998764
No 245
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=92.93 E-value=0.17 Score=51.71 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.++..+.++|. ..|+++|+++.+ ...+......+. ....++.+|+.++.. .+.+
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~ 117 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 117 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence 357899999999999999998886 358899999743 444444332222 122345677776542 1469
Q ss_pred cEEEecCCC
Q 008149 521 DFVICQNSV 529 (576)
Q Consensus 521 DLVIGGpPC 529 (576)
|+|+...+.
T Consensus 118 D~Ivs~~~~ 126 (348)
T 2y1w_A 118 DIIISEPMG 126 (348)
T ss_dssp EEEEECCCB
T ss_pred eEEEEeCch
Confidence 999987663
No 246
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=92.89 E-value=0.066 Score=58.86 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=52.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-C-CceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-G-i~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++.. ...+..+|.-..+-.. ...
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~-----~~~ 295 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT-----QEP 295 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC-----SSC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc-----ccc
Confidence 4689999999999998776543 1 01135899999999988887654322211 1123445543221000 112
Q ss_pred CCccEEEecCCCC
Q 008149 518 GSIDFVICQNSVP 530 (576)
Q Consensus 518 g~~DLVIGGpPCQ 530 (576)
+.||+|+|-||-.
T Consensus 296 ~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 296 TNFDGVLMNPPYS 308 (542)
T ss_dssp CCBSEEEECCCTT
T ss_pred ccccEEEecCCcC
Confidence 5799999999976
No 247
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=92.89 E-value=0.19 Score=46.95 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...+.+.|.. .++++|+++......+..... ....+..+|+.++.. ..+.+|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD 109 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD 109 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence 4678999999999999999998862 478999999988777654321 122245567665531 124688
Q ss_pred EEEecCC
Q 008149 522 FVICQNS 528 (576)
Q Consensus 522 LVIGGpP 528 (576)
+|+....
T Consensus 110 ~v~~~~~ 116 (243)
T 3bkw_A 110 LAYSSLA 116 (243)
T ss_dssp EEEEESC
T ss_pred EEEEecc
Confidence 8887554
No 248
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.89 E-value=0.13 Score=40.27 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=31.1
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
.+....+|++|||+.+.|.+|++.-.. | ++.-..+|+..
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a~n-n-ve~Aa~iL~ef 47 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIAHN-N-IEMAKNILREF 47 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHTTT-C-HHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhcC-C-HHHHHHHHHHh
Confidence 345689999999999999999999655 4 77766677654
No 249
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=92.84 E-value=0.19 Score=47.51 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||.|++...|.+. |-. ..|+++|+++.+.......-... ....+..+|+.+... +. ...+.|
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~--~~---~~~~~~ 148 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHK--YR---MLIAMV 148 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGG--GG---GGCCCE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhh--hc---ccCCcE
Confidence 4678999999999999888765 311 24789999987544333322221 223345677765321 11 012579
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+..+|
T Consensus 149 D~V~~~~~ 156 (233)
T 2ipx_A 149 DVIFADVA 156 (233)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99998655
No 250
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=92.84 E-value=0.15 Score=46.83 Aligned_cols=77 Identities=23% Similarity=0.160 Sum_probs=52.1
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 008149 436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
|+.+.+.+.+|||+-||.|.+...+ |. ..+.++|+++...+..+... ....+..+|+.++..
T Consensus 30 l~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------- 91 (211)
T 2gs9_A 30 LKGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF-------- 91 (211)
T ss_dssp HHTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------
T ss_pred HHHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------
Confidence 3444446789999999999988766 65 24789999999887776543 222345677766541
Q ss_pred ccCCccEEEecCCCC
Q 008149 516 KLGSIDFVICQNSVP 530 (576)
Q Consensus 516 ~~g~~DLVIGGpPCQ 530 (576)
..+.+|+|+....-.
T Consensus 92 ~~~~fD~v~~~~~l~ 106 (211)
T 2gs9_A 92 PGESFDVVLLFTTLE 106 (211)
T ss_dssp CSSCEEEEEEESCTT
T ss_pred CCCcEEEEEEcChhh
Confidence 124799999765433
No 251
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.81 E-value=0.087 Score=41.24 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=25.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~d 115 (576)
+.++..|+.|||+.++|..|+..++.+
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~a~nn 36 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNN 36 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 357999999999999999999999988
No 252
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=92.77 E-value=0.17 Score=51.60 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.+++.+.++|. ..|+++|+++ .....+......+. ....++.+|+.++... .+.+
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~ 132 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKV 132 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCE
T ss_pred CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC--------CCcE
Confidence 356899999999999999999985 3589999997 55555555443322 1223456787766321 1479
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+...
T Consensus 133 D~Ivs~~ 139 (340)
T 2fyt_A 133 DVIISEW 139 (340)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999653
No 253
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=92.63 E-value=0.11 Score=49.05 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=52.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...|...|. ..|.++|+++......+...... ....+..+|+.++.. ..+.||
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD 160 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD 160 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence 468999999999999999888874 35889999999988877654321 122245567766531 124789
Q ss_pred EEEecC
Q 008149 522 FVICQN 527 (576)
Q Consensus 522 LVIGGp 527 (576)
+|+...
T Consensus 161 ~v~~~~ 166 (254)
T 1xtp_A 161 LIVIQW 166 (254)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 998644
No 254
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.59 E-value=0.13 Score=45.47 Aligned_cols=40 Identities=15% Similarity=0.362 Sum_probs=34.3
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 88 TMEITLQLLEM-GFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 88 ~~~k~~~L~~M-GFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
..+++..|++| ||++++|..||..|+-| |++-+++|+-..
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 35789999999 99999999999999988 677778887654
No 255
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=92.55 E-value=0.14 Score=48.11 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 516 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~- 516 (576)
.+.+|||+.||.|+.++.+.++ |. .|+++|+++...+..+.++...+... ..++.+|..++- +.+...
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~ 130 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKY 130 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhc
Confidence 3568999999999999988774 33 47899999999988888776543221 224456654421 111111
Q ss_pred -cCCccEEEecCCCCCc
Q 008149 517 -LGSIDFVICQNSVPQI 532 (576)
Q Consensus 517 -~g~~DLVIGGpPCQ~F 532 (576)
.+.||+|+-..++..+
T Consensus 131 ~~~~fD~V~~d~~~~~~ 147 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRY 147 (221)
T ss_dssp CCCCCSEEEECSCGGGH
T ss_pred CCCceEEEEEcCCcccc
Confidence 1579999977666554
No 256
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=92.54 E-value=0.27 Score=44.79 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=53.8
Q ss_pred cccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 008149 445 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 445 ~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+|||+-||.|.+...+.+. | ..++++|+++......+......+.. ...+..+|+.++.- ..+.+|+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~ 114 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD---FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL 114 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE---EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHcCC---CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence 8999999999999998887 4 34789999999888887765543322 22345678776541 1257999
Q ss_pred EEecCCCC
Q 008149 523 VICQNSVP 530 (576)
Q Consensus 523 VIGGpPCQ 530 (576)
|+......
T Consensus 115 v~~~~~l~ 122 (219)
T 3dlc_A 115 IVSRGSVF 122 (219)
T ss_dssp EEEESCGG
T ss_pred EEECchHh
Confidence 99765443
No 257
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=92.44 E-value=0.22 Score=49.01 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=52.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+-+||||=||.|.+.+.|.+.. -+---|+++|+++......+......+... ..+..+|+.++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~---------- 137 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---------- 137 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence 3457899999999999998887642 111137899999998777776554332221 2245688877642
Q ss_pred CCccEEEecC
Q 008149 518 GSIDFVICQN 527 (576)
Q Consensus 518 g~~DLVIGGp 527 (576)
+++|+|+...
T Consensus 138 ~~~d~v~~~~ 147 (261)
T 4gek_A 138 ENASMVVLNF 147 (261)
T ss_dssp CSEEEEEEES
T ss_pred cccccceeee
Confidence 4688888654
No 258
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=92.35 E-value=0.29 Score=45.66 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc--C
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G 518 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~--g 518 (576)
.+.+|||+.||.|...+.+.++.-.-..|+++|+++......+.++...+.. ...++.+|+.+. +..+.... +
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~ 144 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG 144 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence 3568999999999999988875110124789999999988888887654321 122345565432 12221111 5
Q ss_pred CccEEEecCCCC
Q 008149 519 SIDFVICQNSVP 530 (576)
Q Consensus 519 ~~DLVIGGpPCQ 530 (576)
.||+|+..+|..
T Consensus 145 ~~D~v~~d~~~~ 156 (229)
T 2avd_A 145 TFDVAVVDADKE 156 (229)
T ss_dssp CEEEEEECSCST
T ss_pred CccEEEECCCHH
Confidence 799999877644
No 259
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=92.33 E-value=0.16 Score=40.28 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=32.7
Q ss_pred hhhhhHHHhcCCCC-hHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs-~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
.++...+|.+|||+ .+.+.+|++..+. | ++.-+|+|+..
T Consensus 17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~g-n-ve~Ave~L~~~ 56 (58)
T 1wr1_B 17 YEHQLRQLNDMGFFDFDRNVAALRRSGG-S-VQGALDSLLNG 56 (58)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHHTS-C-HHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-C-HHHHHHHHHhC
Confidence 45578899999995 7789999999875 5 88999999963
No 260
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=92.26 E-value=0.12 Score=50.79 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=37.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
+.+-.|||+|||.|...++..++|-+ ++++|+++.+..+-+..+.
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHH
Confidence 34567999999999999999999964 6789999998887776553
No 261
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=92.20 E-value=0.24 Score=50.09 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.+++.+.++|. .-|+++|+++ .....+......+... ..++.+|+.++... .+.+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~ 106 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP--------FPKV 106 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------SSCE
T ss_pred CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccCC--------CCcc
Confidence 356899999999999999999886 3588999995 4445555443332222 22456777766421 1479
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+...+
T Consensus 107 D~Ivs~~~ 114 (328)
T 1g6q_1 107 DIIISEWM 114 (328)
T ss_dssp EEEEECCC
T ss_pred cEEEEeCc
Confidence 99997654
No 262
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=92.16 E-value=0.19 Score=39.81 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCCC-HHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149 89 MEITLQLLEMGFS-ENQVSLAIEKFGSKTPISELADKIFSG 128 (576)
Q Consensus 89 ~~k~~~L~~MGFs-eeEas~AI~r~G~da~i~eLvD~I~Aa 128 (576)
.+++..|++|||+ ++.+..||..++-| ++.-+|.++..
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~ 56 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 3688899999997 55669999999976 66778887754
No 263
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=92.13 E-value=0.21 Score=39.39 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=31.1
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
.++..+.|++|||+.+.|.+|+..-.. | ++.--+.|+.+
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~N-d-v~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQN-N-IEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTT-C-SHHHHHHHHHS
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcc-c-HHHHHHHHHHH
Confidence 456789999999999999999998544 4 77766777754
No 264
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=92.09 E-value=0.36 Score=44.03 Aligned_cols=74 Identities=20% Similarity=0.122 Sum_probs=50.2
Q ss_pred CCCcccccCCCCChhH-HHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAE-VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~s-lGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.+. ..+...|.+ ++++|+++.+.+..+......+ ....+...|+.++.. ..+.+
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~f 90 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYK---TYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDESM 90 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCE---EEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCce
Confidence 4678999999988873 445667763 7899999998888776654332 223345677776541 11468
Q ss_pred cEEEecC
Q 008149 521 DFVICQN 527 (576)
Q Consensus 521 DLVIGGp 527 (576)
|+|+...
T Consensus 91 D~v~~~~ 97 (209)
T 2p8j_A 91 SFVYSYG 97 (209)
T ss_dssp EEEEECS
T ss_pred eEEEEcC
Confidence 9998654
No 265
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=92.07 E-value=0.28 Score=47.26 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=56.1
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+|||+-||.|+..+.+.++ +. .|+++|+++......+.++...+... ..+..+|+.+. +..+ ...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~ 134 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC 134 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence 3578999999999999988876 43 47899999999888888876543322 22345565432 1111 112
Q ss_pred CCccEEEecCCCCC
Q 008149 518 GSIDFVICQNSVPQ 531 (576)
Q Consensus 518 g~~DLVIGGpPCQ~ 531 (576)
+.||+|+-..++..
T Consensus 135 ~~fD~V~~d~~~~~ 148 (248)
T 3tfw_A 135 PAFDLIFIDADKPN 148 (248)
T ss_dssp CCCSEEEECSCGGG
T ss_pred CCeEEEEECCchHH
Confidence 47999998777654
No 266
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=92.07 E-value=0.095 Score=51.81 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=53.1
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149 439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
..+.+.+|||+-||.|.+...+..+..+-..|+++|+++......+.+....+... ..++.+|+.++.. .
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~- 185 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R- 185 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-
Confidence 34567899999999999988873222222357899999999888887664332111 2245677776542 1
Q ss_pred CCccEEEecC
Q 008149 518 GSIDFVICQN 527 (576)
Q Consensus 518 g~~DLVIGGp 527 (576)
+.||+|+...
T Consensus 186 ~~fD~v~~~~ 195 (305)
T 3ocj_A 186 EGYDLLTSNG 195 (305)
T ss_dssp SCEEEEECCS
T ss_pred CCeEEEEECC
Confidence 5788888533
No 267
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=92.04 E-value=0.31 Score=46.02 Aligned_cols=74 Identities=24% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+=||.|.+...|.+. |.. |+++|+++......+......+.. ...+..+|+.++.. -+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 102 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NE 102 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CC
Confidence 34679999999999999888765 653 689999999888777665433221 12245677766542 14
Q ss_pred CccEEEec
Q 008149 519 SIDFVICQ 526 (576)
Q Consensus 519 ~~DLVIGG 526 (576)
.||+|+..
T Consensus 103 ~fD~V~~~ 110 (256)
T 1nkv_A 103 KCDVAACV 110 (256)
T ss_dssp CEEEEEEE
T ss_pred CCCEEEEC
Confidence 67888763
No 268
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=92.03 E-value=0.12 Score=56.63 Aligned_cols=80 Identities=18% Similarity=0.062 Sum_probs=49.7
Q ss_pred CcccccCCCCChhHHHHHH--------cCC------ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChh
Q 008149 444 LTMLSVFSGIGGAEVTLHR--------LGI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK 508 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~--------aGi------~~k~vvavEid~~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~ 508 (576)
.+|+|.+||.|||-+.+.+ .+. .-..++++|+++.+.++.+.+..-++....+ +..+|.-....
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~- 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ- 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence 4899999999999877532 110 0135899999999988887654333222221 13444322110
Q ss_pred hHHHhhhccCCccEEEecCCCC
Q 008149 509 KFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 509 ~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
.....||+|++-||=.
T Consensus 325 ------~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 325 ------HPDLRADFVMTNPPFN 340 (544)
T ss_dssp ------CTTCCEEEEEECCCSS
T ss_pred ------cccccccEEEECCCcC
Confidence 0125799999999964
No 269
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=92.01 E-value=0.15 Score=46.80 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=50.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+.. ....+...|+.++..... ..-+.||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----PVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS----CCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc----ccCCCcc
Confidence 3488999999999999999998873 68999999987776643 112234455554421100 0113489
Q ss_pred EEEecCCCC
Q 008149 522 FVICQNSVP 530 (576)
Q Consensus 522 LVIGGpPCQ 530 (576)
+|+......
T Consensus 119 ~v~~~~~l~ 127 (227)
T 3e8s_A 119 LICANFALL 127 (227)
T ss_dssp EEEEESCCC
T ss_pred EEEECchhh
Confidence 888765544
No 270
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=91.97 E-value=0.32 Score=48.00 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+-||.|++...+.+. |. .|+++|+++......+......+... ..+..+|+.+++ +
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 154 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E 154 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence 34679999999999999888776 86 37889999998888776654332111 224456665542 4
Q ss_pred CccEEEecC
Q 008149 519 SIDFVICQN 527 (576)
Q Consensus 519 ~~DLVIGGp 527 (576)
.||+|+...
T Consensus 155 ~fD~v~~~~ 163 (318)
T 2fk8_A 155 PVDRIVSIE 163 (318)
T ss_dssp CCSEEEEES
T ss_pred CcCEEEEeC
Confidence 688888654
No 271
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=91.79 E-value=0.19 Score=47.56 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.7
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 008149 438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 484 (576)
Q Consensus 438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k 484 (576)
+.++.+.+|||+-||.|.+...+.+.|.+ |+++|+++......+
T Consensus 37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~ 80 (240)
T 3dli_A 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE 80 (240)
T ss_dssp GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence 34456789999999999999999998874 689999999876654
No 272
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=91.78 E-value=0.15 Score=45.49 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
+++..|+.|||++..|..|+-.||.. .++.-+++|+.-+
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n~-~~e~A~~wL~~~~ 43 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGNM-GAEVAFNWIIVHM 43 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTSC-CHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC-CHHHHHHHHHHhc
Confidence 36678999999999999999999884 7999999998876
No 273
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=91.73 E-value=0.25 Score=45.30 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=49.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
..+.+|||+-||.|.+...+.+.|. .++++|+++......+... ..+...|+.++... + .-+.+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~-----~~~~f 94 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-Y-----EEEQF 94 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-S-----CTTCE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-C-----CCCcc
Confidence 4568999999999999999988874 3789999999877665321 12445666543210 0 11467
Q ss_pred cEEEecCCC
Q 008149 521 DFVICQNSV 529 (576)
Q Consensus 521 DLVIGGpPC 529 (576)
|+|+.....
T Consensus 95 D~v~~~~~l 103 (230)
T 3cc8_A 95 DCVIFGDVL 103 (230)
T ss_dssp EEEEEESCG
T ss_pred CEEEECChh
Confidence 888865443
No 274
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=91.64 E-value=0.2 Score=48.99 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=53.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
..+.+|||+-||.|.+...|... |. .|+++|+++......+......+ ....+..+|+.++.. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~ 87 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N 87 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence 35689999999999999988776 44 37899999998887776654321 122345678876542 1
Q ss_pred CCccEEEecCC
Q 008149 518 GSIDFVICQNS 528 (576)
Q Consensus 518 g~~DLVIGGpP 528 (576)
+.||+|+....
T Consensus 88 ~~fD~v~~~~~ 98 (284)
T 3gu3_A 88 DKYDIAICHAF 98 (284)
T ss_dssp SCEEEEEEESC
T ss_pred CCeeEEEECCh
Confidence 47999997653
No 275
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=91.59 E-value=0.4 Score=46.39 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=50.6
Q ss_pred CCCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+-||.|++...+. ..|. .|.++|+++......+......+.. ...+..+|+.++. +
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 128 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E 128 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence 346799999999999998877 6676 4789999999888777665432211 2224456665443 4
Q ss_pred CccEEEecC
Q 008149 519 SIDFVICQN 527 (576)
Q Consensus 519 ~~DLVIGGp 527 (576)
.||+|+...
T Consensus 129 ~fD~v~~~~ 137 (287)
T 1kpg_A 129 PVDRIVSIG 137 (287)
T ss_dssp CCSEEEEES
T ss_pred CeeEEEEeC
Confidence 688888653
No 276
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=91.54 E-value=0.16 Score=44.17 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=51.0
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~-~~Ie~l~~~~g 518 (576)
..+.+|||+-||.|++...+.+. |-. ..++++|+++ .... ....+...|+.+... +.+.... .-+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence 34678999999999999988776 432 2478899998 4221 112245567765431 1111111 125
Q ss_pred CccEEEecCCCCCcc
Q 008149 519 SIDFVICQNSVPQIP 533 (576)
Q Consensus 519 ~~DLVIGGpPCQ~FS 533 (576)
.+|+|+..+|+..+.
T Consensus 88 ~~D~i~~~~~~~~~~ 102 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSG 102 (180)
T ss_dssp CEEEEEECCCCCCCS
T ss_pred ceeEEEECCCccccC
Confidence 799999999987654
No 277
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=91.49 E-value=0.34 Score=45.76 Aligned_cols=74 Identities=9% Similarity=0.027 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||+-||.|.+...+.+. |. .++++|+++......+... +...+..+|+.++.. .+.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~ 95 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRL-----PNTNFGKADLATWKP---------AQK 95 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCCC---------SSC
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcCc---------cCC
Confidence 4678999999999999988877 55 3789999999887776541 223355677776541 146
Q ss_pred ccEEEecCCCCCc
Q 008149 520 IDFVICQNSVPQI 532 (576)
Q Consensus 520 ~DLVIGGpPCQ~F 532 (576)
||+|+.....+-+
T Consensus 96 fD~v~~~~~l~~~ 108 (259)
T 2p35_A 96 ADLLYANAVFQWV 108 (259)
T ss_dssp EEEEEEESCGGGS
T ss_pred cCEEEEeCchhhC
Confidence 8999986654433
No 278
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.48 E-value=0.19 Score=41.74 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=33.2
Q ss_pred hhhhhHHHhcCCC-ChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGF-s~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
..+...+|++||| ..+.+.+|++..+. | ++.-+|+|+..
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~G-n-ve~Ave~L~~~ 68 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDG-D-IHAAIEMLLGA 68 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTS-C-HHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-C-HHHHHHHHHhC
Confidence 4568899999999 57999999999875 5 88999999963
No 279
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.38 Score=47.13 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~t--n~~g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+|||+-||.|.+...|.+. +. ..|+++|+++......+...... ......++.+|+.++....-..+ ..
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~ 111 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV--DK 111 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT--TS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccc--cC
Confidence 5789999999999999988852 22 34789999999888777665432 12233356788877652210000 11
Q ss_pred CCccEEEecCC
Q 008149 518 GSIDFVICQNS 528 (576)
Q Consensus 518 g~~DLVIGGpP 528 (576)
+.||+|+....
T Consensus 112 ~~fD~V~~~~~ 122 (299)
T 3g5t_A 112 QKIDMITAVEC 122 (299)
T ss_dssp SCEEEEEEESC
T ss_pred CCeeEEeHhhH
Confidence 57999997654
No 280
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=91.42 E-value=0.17 Score=48.40 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=53.9
Q ss_pred CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-C-CccccccccccChhhHHHhhhccCC
Q 008149 443 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+.+|||+-||+|..++.|.++ +-. ..|+++|+++...+..+.++...+.. . ..++.+|..++-. .+ ..+.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence 358999999999999988764 211 24789999999999999888765332 1 1234455543211 11 0268
Q ss_pred ccEEEecCCCCC
Q 008149 520 IDFVICQNSVPQ 531 (576)
Q Consensus 520 ~DLVIGGpPCQ~ 531 (576)
||+|+-..+...
T Consensus 130 fD~V~~d~~~~~ 141 (221)
T 3dr5_A 130 YQLVFGQVSPMD 141 (221)
T ss_dssp EEEEEECCCTTT
T ss_pred cCeEEEcCcHHH
Confidence 999987665544
No 281
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=91.33 E-value=0.25 Score=51.97 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
+-+|||+=||.|-+++-..++|-. -|+|||.++.+..+ +..-..++... ..++.+|+.++.. ...+|
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~D 151 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQA-REVVRFNGLEDRVHVLPGPVETVEL---------PEQVD 151 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCCC---------SSCEE
T ss_pred CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHH-HHHHHHcCCCceEEEEeeeeeeecC---------Ccccc
Confidence 457999999999999999999984 58999999754322 32222222222 2245678877642 14799
Q ss_pred EEEe
Q 008149 522 FVIC 525 (576)
Q Consensus 522 LVIG 525 (576)
+||.
T Consensus 152 vivs 155 (376)
T 4hc4_A 152 AIVS 155 (376)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9994
No 282
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=91.27 E-value=0.26 Score=53.15 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+-||.|.+.+.+.+.|. .-|+++|+++ .....+......+. ....++.+|+.++.. .+.|
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f 225 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 225 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence 357899999999999999988875 3588999998 54555544433322 122345677776531 1479
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+|+..+|
T Consensus 226 D~Ivs~~~ 233 (480)
T 3b3j_A 226 DIIISEPM 233 (480)
T ss_dssp EEEECCCC
T ss_pred EEEEEeCc
Confidence 99997554
No 283
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=91.21 E-value=0.021 Score=55.19 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=51.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||+.||.|++...+.+.|. -|+++|+|+......+.+.. ......++.+|+.++... ..+.+
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f- 95 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY- 95 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence 467899999999999999988884 37899999887655443221 111223556788766421 01356
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|++-+|...
T Consensus 96 ~vv~n~Py~~ 105 (245)
T 1yub_A 96 KIVGNIPYHL 105 (245)
T ss_dssp EEEEECCSSS
T ss_pred EEEEeCCccc
Confidence 7888887654
No 284
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=91.17 E-value=0.14 Score=51.68 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=54.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--C--CCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--G--QTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t--n--~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+++-+||+|.||.|++...+.+.+ ....|.+||+|+...+..+.++... + .+...++.+|..+. +. ..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~ 165 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence 456789999999999999887764 2345889999999999888876531 1 11222445665432 11 11
Q ss_pred cCCccEEEecCCC
Q 008149 517 LGSIDFVICQNSV 529 (576)
Q Consensus 517 ~g~~DLVIGGpPC 529 (576)
.+.+|+|+..+|.
T Consensus 166 ~~~fD~Ii~d~~~ 178 (304)
T 2o07_A 166 QDAFDVIITDSSD 178 (304)
T ss_dssp SSCEEEEEEECC-
T ss_pred CCCceEEEECCCC
Confidence 2579999987664
No 285
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=91.09 E-value=0.4 Score=47.32 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=39.4
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHH
Q 008149 432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW 486 (576)
Q Consensus 432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~ 486 (576)
.++.|......+.+|||+-||.|.+.+.+.+. +. .|+++|+++......+.+
T Consensus 36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~ 89 (292)
T 3g07_A 36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN 89 (292)
T ss_dssp GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence 34555554345789999999999999988876 43 478999999987776654
No 286
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=90.99 E-value=0.35 Score=48.54 Aligned_cols=83 Identities=24% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc------CC-----CCCccccccccccChhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK 509 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t------n~-----~g~l~~~~DI~~lt~~~ 509 (576)
.+.+|||+.||.|.+...+.++ |-. ..|+++|+++.+....+.+.... |+ ....+..+|+.++.. .
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~ 182 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D 182 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence 4678999999999999998886 532 24789999999888887765431 11 112245677766531 1
Q ss_pred HHHhhhccCCccEEEecCCCCC
Q 008149 510 FESLIHKLGSIDFVICQNSVPQ 531 (576)
Q Consensus 510 Ie~l~~~~g~~DLVIGGpPCQ~ 531 (576)
+. .+.||+|+...|+..
T Consensus 183 ~~-----~~~fD~V~~~~~~~~ 199 (336)
T 2b25_A 183 IK-----SLTFDAVALDMLNPH 199 (336)
T ss_dssp ----------EEEEEECSSSTT
T ss_pred cC-----CCCeeEEEECCCCHH
Confidence 11 146999998766543
No 287
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=90.87 E-value=0.3 Score=49.05 Aligned_cols=81 Identities=10% Similarity=-0.023 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~-~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+-+|||+=||.|.++..|.+.|-+ -..|+++|+|+.....++..+ . ....++.+|+.+++-.++.. ......
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---~~v~~i~~D~~~~~~~~~~~--~~~~~~ 115 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---ELLELHAGDALTFDFGSIAR--PGDEPS 115 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---GGEEEEESCGGGCCGGGGSC--SSSSCC
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---CCcEEEECChhcCChhHhcc--cccCCc
Confidence 4678999999999999999887642 011789999999998887763 1 12236779999887544310 000134
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
+.|||-.|
T Consensus 116 ~~vv~NlP 123 (279)
T 3uzu_A 116 LRIIGNLP 123 (279)
T ss_dssp EEEEEECC
T ss_pred eEEEEccC
Confidence 67777776
No 288
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=90.82 E-value=0.2 Score=49.82 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=54.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn----~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+++.+||+|-||.|++...+.+.. +...+.+||+|+...+..+.++...+ .+...++.+|+.+. +. ..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 148 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 148 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HH---hC
Confidence 456799999999999998887663 23458899999999998888764321 11122345555432 11 11
Q ss_pred cCCccEEEecCCC
Q 008149 517 LGSIDFVICQNSV 529 (576)
Q Consensus 517 ~g~~DLVIGGpPC 529 (576)
.+.+|+|+..++.
T Consensus 149 ~~~fD~Ii~d~~~ 161 (283)
T 2i7c_A 149 TNTYDVIIVDSSD 161 (283)
T ss_dssp CSCEEEEEEECCC
T ss_pred CCCceEEEEcCCC
Confidence 3579999986653
No 289
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.81 E-value=0.27 Score=38.65 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=32.3
Q ss_pred hhhHHHhcCCC-ChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 18 EKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 18 ~~r~~li~MGF-s~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
.+-.+|.+||| ..++-.+|++++|. + ++..++.||..
T Consensus 11 ~~L~~L~eMGF~D~~~N~~aL~~~~g-n-v~~aI~~Ll~~ 48 (54)
T 2cp8_A 11 ALMAHLFEMGFCDRQLNLRLLKKHNY-N-ILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHTTTTT-C-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCC-C-HHHHHHHHHhc
Confidence 35678999999 99999999999877 4 88999999975
No 290
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.66 E-value=0.3 Score=40.52 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=32.4
Q ss_pred hHHHHHHHhcCCC-HHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 89 MEITLQLLEMGFS-ENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 89 ~~k~~~L~~MGFs-eeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
.+++..|++|||+ ++.+..||..++-| ++.-||.++...
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~ 69 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS 69 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence 4688899999995 67779999999876 777789988765
No 291
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=90.60 E-value=0.23 Score=39.09 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=27.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCCh
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPI 118 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i 118 (576)
.++++..|+.|||+.+.|..|+....+|..+
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~ 37 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEM 37 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHH
Confidence 3468899999999999999999999998443
No 292
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=90.47 E-value=0.15 Score=50.35 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=53.4
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES 512 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~ 512 (576)
+..|..+.+.+-+|||+=||.|.+...|...|.+ |+++|+++...+..+ .+++..+..+|+.++.-
T Consensus 30 ~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~----- 95 (257)
T 4hg2_A 30 FRWLGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL----- 95 (257)
T ss_dssp HHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC-----
T ss_pred HHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc-----
Confidence 3344555566778999999999999999999864 689999998654322 12333355677666542
Q ss_pred hhhccCCccEEEec
Q 008149 513 LIHKLGSIDFVICQ 526 (576)
Q Consensus 513 l~~~~g~~DLVIGG 526 (576)
.-+.||+|+.+
T Consensus 96 ---~~~sfD~v~~~ 106 (257)
T 4hg2_A 96 ---PPASVDVAIAA 106 (257)
T ss_dssp ---CSSCEEEEEEC
T ss_pred ---cCCcccEEEEe
Confidence 12579999974
No 293
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=90.41 E-value=0.54 Score=45.72 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=51.3
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++......+......+.. ...+..+|+.++.-. -+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~ 149 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE--------DN 149 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--------TT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCC--------CC
Confidence 45679999999999999988876 76 3789999999877776654332221 122456677665311 14
Q ss_pred CccEEEecC
Q 008149 519 SIDFVICQN 527 (576)
Q Consensus 519 ~~DLVIGGp 527 (576)
.||+|+...
T Consensus 150 ~fD~v~~~~ 158 (297)
T 2o57_A 150 SYDFIWSQD 158 (297)
T ss_dssp CEEEEEEES
T ss_pred CEeEEEecc
Confidence 678887653
No 294
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.26 E-value=0.37 Score=37.49 Aligned_cols=38 Identities=21% Similarity=0.062 Sum_probs=31.8
Q ss_pred hhhhHHHhcCCCChH-HHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 17 IEKRASLLMMNFSVN-EVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 17 s~~r~~li~MGFs~e-~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
.+...+|.+|||+.+ .+.+|++..+. | ++.-+|+|+..
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~G-d-v~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGG-D-VDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-C-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCC-C-HHHHHHHHHhC
Confidence 457899999999665 57999999875 5 88999999975
No 295
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=90.14 E-value=0.23 Score=50.11 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=55.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
+++.+||+|-||.|++...+.+.. ...-+.+||+|+...+..+.++...+ .+...++.+|+.+. +..
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~--- 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LER--- 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HHH---
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HHh---
Confidence 456799999999999998887652 22458899999999988888764311 12223455666542 111
Q ss_pred ccCCccEEEecCCC
Q 008149 516 KLGSIDFVICQNSV 529 (576)
Q Consensus 516 ~~g~~DLVIGGpPC 529 (576)
..+.+|+|+..+|.
T Consensus 148 ~~~~fD~Ii~d~~~ 161 (314)
T 1uir_A 148 TEERYDVVIIDLTD 161 (314)
T ss_dssp CCCCEEEEEEECCC
T ss_pred cCCCccEEEECCCC
Confidence 13579999987664
No 296
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=90.11 E-value=0.8 Score=43.70 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||+-||.|++...+.+. |. .|+++|+++......+......+... ..+..+|+.++... -+.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~ 129 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE--------DAS 129 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC--------TTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC--------CCC
Confidence 4679999999999999888764 54 47899999998877776654432221 23456777665411 147
Q ss_pred ccEEEecCCCCCc
Q 008149 520 IDFVICQNSVPQI 532 (576)
Q Consensus 520 ~DLVIGGpPCQ~F 532 (576)
||+|+....-+.+
T Consensus 130 fD~v~~~~~l~~~ 142 (273)
T 3bus_A 130 FDAVWALESLHHM 142 (273)
T ss_dssp EEEEEEESCTTTS
T ss_pred ccEEEEechhhhC
Confidence 9999976554433
No 297
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=90.10 E-value=0.22 Score=50.69 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--C--CCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--G--QTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t--n--~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+.+.+|||+-||.|++...+.+.. +...|.+||+|+.+.+..+.+.... . .+...++.+|+.+. ++ ..
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 186 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 186 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence 356789999999999998887652 1245889999999999888876431 0 11122345555432 11 11
Q ss_pred cCCccEEEecCC
Q 008149 517 LGSIDFVICQNS 528 (576)
Q Consensus 517 ~g~~DLVIGGpP 528 (576)
.+.||+|+..++
T Consensus 187 ~~~fDvIi~d~~ 198 (321)
T 2pt6_A 187 TNTYDVIIVDSS 198 (321)
T ss_dssp CSCEEEEEEECC
T ss_pred CCCceEEEECCc
Confidence 257999998764
No 298
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=89.66 E-value=0.34 Score=46.54 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 127 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A 127 (576)
++|+..|++|||++++|..|+.+++-| ++.-++.++.
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd--~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWD--VETATELLLS 200 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence 578999999999999999999999886 5555555543
No 299
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=89.65 E-value=0.33 Score=48.72 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh---c-CCCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---S-GQTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~---t-n~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+++.+||++-||.|++...+.+.. ....|.+||+|+...+..+.++.. . ..+...++.+|+.++... . .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~--~ 166 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ----T--P 166 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS----S--C
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh----c--c
Confidence 456899999999999999887762 234588999999998888876531 1 011222445665433110 0 1
Q ss_pred cCCccEEEecCCC
Q 008149 517 LGSIDFVICQNSV 529 (576)
Q Consensus 517 ~g~~DLVIGGpPC 529 (576)
.+.||+|+...|.
T Consensus 167 ~~~fDvIi~d~~~ 179 (304)
T 3bwc_A 167 DNTYDVVIIDTTD 179 (304)
T ss_dssp TTCEEEEEEECC-
T ss_pred CCceeEEEECCCC
Confidence 2579999986543
No 300
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.45 E-value=0.31 Score=38.27 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=29.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149 92 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 126 (576)
Q Consensus 92 ~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~ 126 (576)
+..|++|||+++-|..|+.+-|.. .|+.-.|.|.
T Consensus 13 lq~L~eMGFd~erae~Alk~Tg~~-Gle~AmewL~ 46 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQTGSR-SIEAALEYIS 46 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTSC-CHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 458999999999999999999986 7887777764
No 301
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=89.44 E-value=0.64 Score=44.49 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=49.3
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++...+..+... ....+...|+.++.. ..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence 35678999999999999888876 54 3789999999877766532 122345567665531 114
Q ss_pred CccEEEecC
Q 008149 519 SIDFVICQN 527 (576)
Q Consensus 519 ~~DLVIGGp 527 (576)
.||+|+...
T Consensus 148 ~fD~v~~~~ 156 (269)
T 1p91_A 148 SMDAIIRIY 156 (269)
T ss_dssp CEEEEEEES
T ss_pred ceeEEEEeC
Confidence 688888644
No 302
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=89.39 E-value=0.32 Score=36.96 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=24.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~d 115 (576)
++.+..|+.|||+.+.|..|+..+..|
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nn 31 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNN 31 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcc
Confidence 457889999999999999999999988
No 303
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=89.27 E-value=0.59 Score=35.53 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=29.5
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
+.....|++|||+.+.|.+|+..-.. | ++.--+.|+..
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~N-n-ie~A~nIL~ef 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQN-N-IEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTT-C-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhc-c-HHHHHHHHHHh
Confidence 34568899999999999999999554 5 77766666643
No 304
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=89.26 E-value=1 Score=46.98 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+.||-||=+..+-.++-. ..|+|+|+++.-.+.++.+-........ ....-.|...+...+..+ ..+.|
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~--~~~~f 224 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL--EGDTY 224 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--STTCE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--ccccC
Confidence 3678999999999999888887743 4588999999988888776543311100 000112333444333322 23579
Q ss_pred cEEEecCCCCCc
Q 008149 521 DFVICQNSVPQI 532 (576)
Q Consensus 521 DLVIGGpPCQ~F 532 (576)
|.|+-=+||.+-
T Consensus 225 D~VLlDaPCSg~ 236 (359)
T 4fzv_A 225 DRVLVDVPCTTD 236 (359)
T ss_dssp EEEEEECCCCCH
T ss_pred CEEEECCccCCC
Confidence 999999999873
No 305
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=89.25 E-value=0.7 Score=44.68 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=52.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+.+|||+=||.|.+...+...|. .|+++|+++......+..+ +...+..+|+.++.. .+.||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD 119 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD 119 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence 457899999999999999988775 3789999999887776543 122355677776542 14689
Q ss_pred EEEecCCC
Q 008149 522 FVICQNSV 529 (576)
Q Consensus 522 LVIGGpPC 529 (576)
+|+....-
T Consensus 120 ~v~~~~~l 127 (279)
T 3ccf_A 120 AVFSNAML 127 (279)
T ss_dssp EEEEESCG
T ss_pred EEEEcchh
Confidence 99876543
No 306
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=89.24 E-value=0.69 Score=43.85 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 490 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t 490 (576)
.+.+|||+-||.|.....+.+..-.-..|+++|+++...+..+.++...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 108 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN 108 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3568999999999999988776210124789999999988888877544
No 307
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=89.21 E-value=0.83 Score=40.34 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=48.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
..+.+|||+-||.|.+...+.+.+. .+.++|+++......+... +...+..+| ..+ ..+.+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-----~~v~~~~~d-~~~----------~~~~~ 76 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKF-----DSVITLSDP-KEI----------PDNSV 76 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHC-----TTSEEESSG-GGS----------CTTCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhC-----CCcEEEeCC-CCC----------CCCce
Confidence 3467899999999999999998873 5889999999887776541 122233445 111 12579
Q ss_pred cEEEecCCC
Q 008149 521 DFVICQNSV 529 (576)
Q Consensus 521 DLVIGGpPC 529 (576)
|+|+.....
T Consensus 77 D~v~~~~~l 85 (170)
T 3i9f_A 77 DFILFANSF 85 (170)
T ss_dssp EEEEEESCS
T ss_pred EEEEEccch
Confidence 999965443
No 308
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=89.14 E-value=0.83 Score=44.17 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=49.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC----CCccccccccccChhhHHHhhhcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT----GELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~----g~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
.+.+|||+-||.|.+...|...|. .|+++|+++......+......... ...+..+|+.++..+ + ...
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~-~~~ 128 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD----V-PAG 128 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH----S-CCT
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc----c-ccC
Confidence 457899999999999999999987 3789999999887776543111110 111234555543311 0 112
Q ss_pred CCccEEEe
Q 008149 518 GSIDFVIC 525 (576)
Q Consensus 518 g~~DLVIG 525 (576)
+.||+|+.
T Consensus 129 ~~fD~V~~ 136 (293)
T 3thr_A 129 DGFDAVIC 136 (293)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEE
Confidence 58999995
No 309
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=89.12 E-value=0.49 Score=42.75 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=46.4
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCc-------eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccc-cccccccChh-hH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF 510 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~-------~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~-~~DI~~lt~~-~I 510 (576)
+.+.+||||-||.|++...+.+. |-. -..|+++|+++... .....+. .+|+.+.... .+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence 34689999999999999988776 421 02478999998530 1122244 5677654321 11
Q ss_pred HHhhhccCCccEEEecCCC
Q 008149 511 ESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 511 e~l~~~~g~~DLVIGGpPC 529 (576)
.... .-+.||+|+...++
T Consensus 90 ~~~~-~~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 90 LEVL-PGRRADVILSDMAP 107 (196)
T ss_dssp HHHS-GGGCEEEEEECCCC
T ss_pred HHhc-CCCCCcEEEeCCCC
Confidence 1111 11379999976543
No 310
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=88.89 E-value=0.52 Score=37.61 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=30.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHh---CCCCChhhhhHhH
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKF---GSKTPISELADKI 125 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~---G~da~i~eLvD~I 125 (576)
.|-+..|+.+||++.||..|+.++ ..+.++++++-..
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~A 57 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEA 57 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 356778999999999999999998 4567888876543
No 311
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=88.65 E-value=0.75 Score=44.05 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 516 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~- 516 (576)
.+-+||++-||.|+..+.+.++ +. .++++|+++......+.++...+... ..++.+|..++ ++.+...
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 142 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQ 142 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHST
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcc
Confidence 3468999999999999888775 43 47899999999999998887653221 12344555432 1222111
Q ss_pred --cCCccEEEecCCCCC
Q 008149 517 --LGSIDFVICQNSVPQ 531 (576)
Q Consensus 517 --~g~~DLVIGGpPCQ~ 531 (576)
.+.||+|+-..+|..
T Consensus 143 ~~~~~fD~I~~d~~~~~ 159 (237)
T 3c3y_A 143 ESEGSYDFGFVDADKPN 159 (237)
T ss_dssp TCTTCEEEEEECSCGGG
T ss_pred CCCCCcCEEEECCchHH
Confidence 257999998776654
No 312
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.61 E-value=0.44 Score=38.89 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=35.9
Q ss_pred hhhhhhhhHHHHHHHhcCCCHHHH-HHHHHHhCCCCChhhhhHhHhhcc
Q 008149 82 DETLYGTMEITLQLLEMGFSENQV-SLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 82 ~e~~~~~~~k~~~L~~MGFseeEa-s~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
+|..|+ .++.+|..|||.++++ ..||..++-| |+--||.++...
T Consensus 15 pe~~y~--~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~ 59 (67)
T 2dna_A 15 PEVRFS--KEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQ 59 (67)
T ss_dssp HHHHTH--HHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCC
T ss_pred hHHHHH--HHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 555554 5788999999988877 8999999965 888899998876
No 313
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=88.50 E-value=0.72 Score=42.63 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=51.8
Q ss_pred CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 008149 443 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+|||+-||.|.....+.++ |. .|+++|+++...+..+.++...+... ..++.+|..++ +. ...+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~~ 126 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQRD 126 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCCS
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCCC
Confidence 468999999999999988765 43 47899999999988888776442211 11334444321 11 1124
Q ss_pred CccEEEecCCCCC
Q 008149 519 SIDFVICQNSVPQ 531 (576)
Q Consensus 519 ~~DLVIGGpPCQ~ 531 (576)
||+|+...++..
T Consensus 127 -fD~v~~~~~~~~ 138 (210)
T 3c3p_A 127 -IDILFMDCDVFN 138 (210)
T ss_dssp -EEEEEEETTTSC
T ss_pred -CCEEEEcCChhh
Confidence 999998766544
No 314
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=88.43 E-value=0.41 Score=48.74 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn----~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+++.+||+|-||.|++...+.+.. +...|.+||+|+...+..+.++...+ .+...++.+|+.+. +. ..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~ 178 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH 178 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence 456789999999999998887652 23458899999999998888775321 11122344555432 11 12
Q ss_pred cCCccEEEecCC
Q 008149 517 LGSIDFVICQNS 528 (576)
Q Consensus 517 ~g~~DLVIGGpP 528 (576)
.+.+|+|+..++
T Consensus 179 ~~~fD~Ii~d~~ 190 (314)
T 2b2c_A 179 KNEFDVIITDSS 190 (314)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCceEEEEcCC
Confidence 357999997664
No 315
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=88.10 E-value=0.28 Score=46.39 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
.+.+|||+-||.|.+...+.+.|. ..|+++|+++.+....+.+..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~ 100 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK 100 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence 457899999999999988888886 458899999999888877654
No 316
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=87.84 E-value=1 Score=40.91 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=36.6
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT 506 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt 506 (576)
+.+.+||||=||.|+++..+.+. +-.-..|+++|+++.+. .++..+..+|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~ 76 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDN 76 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchh
Confidence 45678999999999999888764 20012478999998531 122234567776654
No 317
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=87.79 E-value=0.44 Score=46.42 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=40.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 490 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t 490 (576)
+..-+||||=||.|.+++.+..+.=.. .++++|+|+.+..+.+++....
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~ 96 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKL 96 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHS
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhc
Confidence 557899999999999999998774333 6899999999999999887543
No 318
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=87.67 E-value=0.25 Score=50.45 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=58.0
Q ss_pred chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 008149 429 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 508 (576)
Q Consensus 429 v~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~ 508 (576)
+...|++++. | ++-.+||||+|.|.+.+-+-+ |. .-++.||.++.+.++++.+.... ....++..|...
T Consensus 80 l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~---- 148 (283)
T 2oo3_A 80 FLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVS---- 148 (283)
T ss_dssp GHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHH----
T ss_pred HHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHH----
Confidence 4566777777 3 456799999999997666555 43 45889999999999998765321 112233344321
Q ss_pred hHHHhhhccCCccEEEecCCCC
Q 008149 509 KFESLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 509 ~Ie~l~~~~g~~DLVIGGpPCQ 530 (576)
-+..+......+|||.-=||=.
T Consensus 149 ~L~~l~~~~~~fdLVfiDPPYe 170 (283)
T 2oo3_A 149 KLNALLPPPEKRGLIFIDPSYE 170 (283)
T ss_dssp HHHHHCSCTTSCEEEEECCCCC
T ss_pred HHHHhcCCCCCccEEEECCCCC
Confidence 1222212223599999999843
No 319
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=87.49 E-value=0.76 Score=45.28 Aligned_cols=82 Identities=12% Similarity=0.009 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 521 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D 521 (576)
.+-+|||+=||.|.++. +.+ |-+ .-|+++|+|+.....++...... ....++.+|+.+++-.++.. ..+..|
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-~~~-~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~---~~~~~~ 92 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-ERL-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAE---KMGQPL 92 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-TTC-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHH---HHTSCE
T ss_pred CcCEEEEECCCCcHHHH-hhh-CCC-CeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhc---ccCCce
Confidence 45689999999999999 876 322 12789999999988887543211 12335679998887543310 013468
Q ss_pred EEEecCCCCC
Q 008149 522 FVICQNSVPQ 531 (576)
Q Consensus 522 LVIGGpPCQ~ 531 (576)
+|+|..|=+-
T Consensus 93 ~vvsNlPY~i 102 (252)
T 1qyr_A 93 RVFGNLPYNI 102 (252)
T ss_dssp EEEEECCTTT
T ss_pred EEEECCCCCc
Confidence 9999998543
No 320
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=87.39 E-value=1.4 Score=44.28 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=36.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 489 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 489 (576)
+.+.+||||=||.|+....+...|. ..|+++|+++.+.+.-+..+..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~ 93 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK 93 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence 5578999999999987666666664 3488999999998888776543
No 321
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=87.29 E-value=0.44 Score=49.00 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t----n~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+.+.+||+|-||.|++...+.+.. ....|.+||+|+...+..+.++... ..+...++.+|+.+. +..+ .
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~ 191 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A 191 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence 456789999999999999887762 2345889999999999888876431 011222445665432 1110 1
Q ss_pred cCCccEEEecCC
Q 008149 517 LGSIDFVICQNS 528 (576)
Q Consensus 517 ~g~~DLVIGGpP 528 (576)
.+.||+|+..++
T Consensus 192 ~~~fDlIi~d~~ 203 (334)
T 1xj5_A 192 EGSYDAVIVDSS 203 (334)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCccEEEECCC
Confidence 257999997543
No 322
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=87.01 E-value=0.4 Score=46.14 Aligned_cols=73 Identities=23% Similarity=0.199 Sum_probs=50.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+|||+=||.|.+...|.+.|.+ |+++|+++......+. .....+..+|+.++... .+.|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~~--------~~~f 95 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGLF---VYAVEPSIVMRQQAVV------HPQVEWFTGYAENLALP--------DKSV 95 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTCE---EEEECSCHHHHHSSCC------CTTEEEECCCTTSCCSC--------TTCB
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCCE---EEEEeCCHHHHHHHHh------ccCCEEEECchhhCCCC--------CCCE
Confidence 35689999999999999999888763 6899999976543221 11223456777765421 2579
Q ss_pred cEEEecCCCC
Q 008149 521 DFVICQNSVP 530 (576)
Q Consensus 521 DLVIGGpPCQ 530 (576)
|+|+......
T Consensus 96 D~v~~~~~l~ 105 (261)
T 3ege_A 96 DGVISILAIH 105 (261)
T ss_dssp SEEEEESCGG
T ss_pred eEEEEcchHh
Confidence 9999766543
No 323
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=86.96 E-value=0.52 Score=43.91 Aligned_cols=71 Identities=25% Similarity=0.307 Sum_probs=48.0
Q ss_pred ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149 434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 513 (576)
Q Consensus 434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l 513 (576)
..|..+.| +.+|||+-||.|.+...+... +++|+++...+..+.. +..+...|+.++..
T Consensus 40 ~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~------ 98 (219)
T 1vlm_A 40 QAVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL------ 98 (219)
T ss_dssp HHHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS------
T ss_pred HHHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC------
Confidence 34444455 789999999999998877554 6899999987776542 22245567765531
Q ss_pred hhccCCccEEEecC
Q 008149 514 IHKLGSIDFVICQN 527 (576)
Q Consensus 514 ~~~~g~~DLVIGGp 527 (576)
..+.+|+|+...
T Consensus 99 --~~~~fD~v~~~~ 110 (219)
T 1vlm_A 99 --KDESFDFALMVT 110 (219)
T ss_dssp --CTTCEEEEEEES
T ss_pred --CCCCeeEEEEcc
Confidence 114688888654
No 324
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=86.89 E-value=1.2 Score=42.24 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc--CC
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL--GS 519 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~--g~ 519 (576)
+-+|||+-||.|...+.+.++--+-..++++|+++...+..+.++...+... ..+..+|..+. +..+.... +.
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~~~~~ 148 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGKPLPE 148 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSSSCCC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcCCCCC
Confidence 4689999999999998887751101247899999999888888876543211 11334554321 22221111 67
Q ss_pred ccEEEecCCCC
Q 008149 520 IDFVICQNSVP 530 (576)
Q Consensus 520 ~DLVIGGpPCQ 530 (576)
||+|+-..++.
T Consensus 149 fD~V~~d~~~~ 159 (232)
T 3cbg_A 149 FDLIFIDADKR 159 (232)
T ss_dssp EEEEEECSCGG
T ss_pred cCEEEECCCHH
Confidence 99999766543
No 325
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.65 E-value=0.74 Score=37.58 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=32.6
Q ss_pred hhhhhHHHhcCCCC-hHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149 16 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAAQ 57 (576)
Q Consensus 16 ~s~~r~~li~MGFs-~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q 57 (576)
......+|.+|||. .+.+.+|++..+. | ++.-+|+|+..+
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at~G-n-ve~Ave~L~~~~ 59 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIATDG-D-TNAAIYKLKSSQ 59 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHTTS-C-HHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCC-C-HHHHHHHHHhCC
Confidence 45578899999995 5566999999875 5 899999999753
No 326
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=86.62 E-value=0.46 Score=48.91 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=51.9
Q ss_pred CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.++||+|=||.|++...+.+. +.+ +.+||||+...+..+.|+.....+...++.+|..++- ..+ .-+.|
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~---v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~f 160 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSR---NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPASR 160 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCE---EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTCE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcE---EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCCC
Confidence 469999999999999888773 542 6789999999999888874321122234566665431 110 12579
Q ss_pred cEEEecCC
Q 008149 521 DFVICQNS 528 (576)
Q Consensus 521 DLVIGGpP 528 (576)
|+||...+
T Consensus 161 DvIi~D~~ 168 (317)
T 3gjy_A 161 DVIIRDVF 168 (317)
T ss_dssp EEEEECCS
T ss_pred CEEEECCC
Confidence 99997543
No 327
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=86.06 E-value=1.4 Score=47.51 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHh-------hhcC--CCCCccccccccccChhhHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKFE 511 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~-~aGi~~k~vvavEid~~a~~t~k~~~-------~~tn--~~g~l~~~~DI~~lt~~~Ie 511 (576)
.+-+||||=||.|.+.+.+. ..|. .-|++||+++.+..+-+.+. ...+ .....++.+|+.++.-..
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d-- 248 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE-- 248 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH--
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc--
Confidence 46789999999999998776 4565 34889999987665554421 1111 112335678998764321
Q ss_pred HhhhccCCccEEEecCCC
Q 008149 512 SLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 512 ~l~~~~g~~DLVIGGpPC 529 (576)
.++.+|+|+..++|
T Consensus 249 ----~~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 249 ----RIANTSVIFVNNFA 262 (438)
T ss_dssp ----HHHTCSEEEECCTT
T ss_pred ----ccCCccEEEEcccc
Confidence 12468999988776
No 328
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=85.96 E-value=0.47 Score=46.93 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=48.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 516 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t----n~~g~l~~~~DI~~lt~~~Ie~l~~~ 516 (576)
+++-+||++-||.|++...+.+.| ..|.+||+|+...+..+.++... ..+...++.+|..+.-
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence 456789999999999988777665 45889999999877766554320 0111223445554321
Q ss_pred cCCccEEEecC
Q 008149 517 LGSIDFVICQN 527 (576)
Q Consensus 517 ~g~~DLVIGGp 527 (576)
+.+|+|+...
T Consensus 138 -~~fD~Ii~d~ 147 (262)
T 2cmg_A 138 -KKYDLIFCLQ 147 (262)
T ss_dssp -CCEEEEEESS
T ss_pred -hhCCEEEECC
Confidence 4689999764
No 329
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=85.88 E-value=0.52 Score=43.68 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=31.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 482 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t 482 (576)
.+.+|||+-||.|.+...|.+.+= -..|+++|+++.....
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~ 66 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEK 66 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHH
Confidence 467899999999999999988731 1347899999985553
No 330
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=85.58 E-value=0.74 Score=53.67 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=36.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 485 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~ 485 (576)
.+.+|||+-||.|.+...|.+.|-+..-|+++|+++.+.+..+.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~ARe 764 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK 764 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence 46799999999999999999887222347899999998877765
No 331
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=85.58 E-value=1.5 Score=44.85 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=49.3
Q ss_pred CCCCcccccCCCCChhH-HHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 441 PGGLTMLSVFSGIGGAE-VTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~s-lGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+.+.+|||+=||.||++ +-+.+ .|. .|+++|+++.....-+.+....+.....++.+|+.++. .+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~ 187 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL 187 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence 45789999999999876 33333 465 37899999998887777665433322234567776643 15
Q ss_pred CccEEEe
Q 008149 519 SIDFVIC 525 (576)
Q Consensus 519 ~~DLVIG 525 (576)
.||+|+-
T Consensus 188 ~FDvV~~ 194 (298)
T 3fpf_A 188 EFDVLMV 194 (298)
T ss_dssp CCSEEEE
T ss_pred CcCEEEE
Confidence 7999974
No 332
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=84.99 E-value=1.1 Score=39.59 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=32.7
Q ss_pred hhhhhHHHhcCCCCh-HHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149 16 HIEKRASLLMMNFSV-NEVDFALDKLGKDAPVYELVDFITAA 56 (576)
Q Consensus 16 ~s~~r~~li~MGFs~-e~V~kAIqe~Ge~~~~~~Ile~Ll~~ 56 (576)
.++...+|.+|||+. +.+.+|+...+. | ++.=||+|+..
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~G-d-ve~AVe~L~~~ 105 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGG-D-IQAALELIFAG 105 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTS-C-HHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCC-C-HHHHHHHHHhc
Confidence 356789999999964 799999999875 5 89999999963
No 333
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=84.96 E-value=0.44 Score=46.11 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=53.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc--cCC
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--LGS 519 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~--~g~ 519 (576)
+-+|||+-||.|+.++.+.++-=+-..|+++|+++......+.++...+... ..++.+|..++- ..+... .+.
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~~~~~ 136 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEGGEHQ 136 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHHCSSC
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhccCCCC
Confidence 4689999999999999888741001247899999887766676665543321 224456665432 111111 368
Q ss_pred ccEEEecCCCCC
Q 008149 520 IDFVICQNSVPQ 531 (576)
Q Consensus 520 ~DLVIGGpPCQ~ 531 (576)
||+|+-..++..
T Consensus 137 fD~V~~d~~~~~ 148 (242)
T 3r3h_A 137 FDFIFIDADKTN 148 (242)
T ss_dssp EEEEEEESCGGG
T ss_pred EeEEEEcCChHH
Confidence 999998776543
No 334
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=84.92 E-value=1.4 Score=42.58 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=55.8
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 516 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~- 516 (576)
.+-+|||+-||.|...+.+.++ |. .|+++|+++......+.++...+... ..++.+|..++ +..+...
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 151 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE 151 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence 3468999999999999888775 43 47899999999998888886543211 11344555432 1222110
Q ss_pred --cCCccEEEecCCCCC
Q 008149 517 --LGSIDFVICQNSVPQ 531 (576)
Q Consensus 517 --~g~~DLVIGGpPCQ~ 531 (576)
.+.||+|+-..++..
T Consensus 152 ~~~~~fD~V~~d~~~~~ 168 (247)
T 1sui_A 152 KNHGSYDFIFVDADKDN 168 (247)
T ss_dssp GGTTCBSEEEECSCSTT
T ss_pred CCCCCEEEEEEcCchHH
Confidence 257999998777654
No 335
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=84.64 E-value=1.2 Score=39.54 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=31.6
Q ss_pred hHHHHHHHhcCCCH-HHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149 89 MEITLQLLEMGFSE-NQVSLAIEKFGSKTPISELADKIFSG 128 (576)
Q Consensus 89 ~~k~~~L~~MGFse-eEas~AI~r~G~da~i~eLvD~I~Aa 128 (576)
.+++..|.+|||++ +.+..||.+++-| |+--+|.++..
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~ 105 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence 46888999999965 6899999999965 77778888764
No 336
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=83.34 E-value=0.94 Score=49.42 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=48.5
Q ss_pred CCcccccCCCCChhHHHHHH-c---C--------CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhH
Q 008149 443 GLTMLSVFSGIGGAEVTLHR-L---G--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 510 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~-a---G--------i~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~I 510 (576)
+-+|+|-.||.|||-++... + + +.-..++++|+++.+.++.+.+.--++.....+..+|--.....+
T Consensus 218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~- 296 (530)
T 3ufb_A 218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE- 296 (530)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG-
T ss_pred CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh-
Confidence 46899999999999776532 1 1 011247899999998887776432222211223344422111100
Q ss_pred HHhhhccCCccEEEecCCC
Q 008149 511 ESLIHKLGSIDFVICQNSV 529 (576)
Q Consensus 511 e~l~~~~g~~DLVIGGpPC 529 (576)
......||+|+|=||=
T Consensus 297 ---~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 297 ---MGDKDRVDVILTNPPF 312 (530)
T ss_dssp ---CCGGGCBSEEEECCCS
T ss_pred ---hcccccceEEEecCCC
Confidence 0112479999999995
No 337
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=83.00 E-value=1.6 Score=42.15 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh------cCCCCCccccccccccChhhHHHhhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~------tn~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
.+.+|||+=||.|.+.+.|.+..=. ..++++|+++......+..... .......++.+|+.+. +...+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~- 119 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF- 119 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC-
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC-
Confidence 4578999999999999988776311 2478999999877655543221 1112223456777652 11111
Q ss_pred ccCCccEEEecCCCCCc
Q 008149 516 KLGSIDFVICQNSVPQI 532 (576)
Q Consensus 516 ~~g~~DLVIGGpPCQ~F 532 (576)
..+.+|+|+-.+|..-+
T Consensus 120 ~~~~~D~v~~~~~dp~~ 136 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHF 136 (235)
T ss_dssp CTTCEEEEEEESCC---
T ss_pred CCcCeeEEEEeCCCchh
Confidence 12579999877775444
No 338
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=82.96 E-value=1.1 Score=46.03 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-----C---CCCCccccccccccChh---h
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-----G---QTGELVQIEDIQALTTK---K 509 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t-----n---~~g~l~~~~DI~~lt~~---~ 509 (576)
.+.+|||+-||.|.+...|.+. |-. ..|+++|+++......+.+.... + .....+..+|+.++... .
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 4679999999999998888764 211 24789999999888777643211 0 02233566788766321 1
Q ss_pred HHHhhhccCCccEEEecCC
Q 008149 510 FESLIHKLGSIDFVICQNS 528 (576)
Q Consensus 510 Ie~l~~~~g~~DLVIGGpP 528 (576)
+ .-+.||+|+....
T Consensus 162 ~-----~~~~fD~V~~~~~ 175 (383)
T 4fsd_A 162 V-----PDSSVDIVISNCV 175 (383)
T ss_dssp C-----CTTCEEEEEEESC
T ss_pred C-----CCCCEEEEEEccc
Confidence 1 1257999997643
No 339
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=82.56 E-value=0.99 Score=43.19 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+-+|||+=||.|.....+.+.+. ..+.+||+++...+..+.+....+ ....++.+|...+... + .-+.|
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~----~--~~~~F 129 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT----L--PDGHF 129 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG----S--CTTCE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc----c--cccCC
Confidence 4688999999999999888877653 457899999998888877654332 1222334554433211 0 12568
Q ss_pred cEEEe
Q 008149 521 DFVIC 525 (576)
Q Consensus 521 DLVIG 525 (576)
|.|+.
T Consensus 130 D~i~~ 134 (236)
T 3orh_A 130 DGILY 134 (236)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 99874
No 340
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=81.11 E-value=0.76 Score=46.66 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=37.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
.+-.|||.|||.|...++..++|-+ .+++|+++....+-+..+.
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~~gr~---~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGGS
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHHH
Confidence 4556999999999999999999964 5789999999887776543
No 341
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=81.01 E-value=2.3 Score=33.77 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=32.0
Q ss_pred chhhhhHHHhcCCCChHHHHHHHHHh---CCCCcHHHHHHHHH
Q 008149 15 LHIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT 54 (576)
Q Consensus 15 ~~s~~r~~li~MGFs~e~V~kAIqe~---Ge~~~~~~Ile~Ll 54 (576)
..++..+-|+.+||++.++.+|+++. .++.++++++-.-|
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL 58 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL 58 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 46788999999999999999999987 33445777776555
No 342
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=80.95 E-value=2.4 Score=41.50 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=47.3
Q ss_pred CCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
..+.+||||=||.|+++.-+.. .|=. -.|+++|+++...+.+...-.. .+....+.+|++..... . ...+.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~--~---~~~~~ 146 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSY--K---SVVEN 146 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGT--T---TTCCC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhh--h---ccccc
Confidence 3478999999999998877754 3322 2489999999764333221111 12223456787754311 0 01257
Q ss_pred ccEEEecCC
Q 008149 520 IDFVICQNS 528 (576)
Q Consensus 520 ~DLVIGGpP 528 (576)
||+|+-..|
T Consensus 147 ~D~I~~d~a 155 (232)
T 3id6_C 147 VDVLYVDIA 155 (232)
T ss_dssp EEEEEECCC
T ss_pred eEEEEecCC
Confidence 899876543
No 343
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=80.43 E-value=3.9 Score=43.71 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRIL 483 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~ 483 (576)
..+.+||||-||.|.+.+.+.+. |. ..|++||+++.+...-
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLT 282 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHH
Confidence 35678999999999999888774 53 3489999999876655
No 344
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=80.23 E-value=1 Score=45.76 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=45.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH-HHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI-LKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t-~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
.+.+|||+=||.|+++..|.+.|. .-|++||+++..... ++. .+.. .....||+.++.+.+. ...
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l~-----~~~ 151 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDFT-----EGL 151 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGCT-----TCC
T ss_pred cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhCC-----CCC
Confidence 567899999999999998888886 358999999864332 221 1111 1223566666654432 123
Q ss_pred ccEEEe
Q 008149 520 IDFVIC 525 (576)
Q Consensus 520 ~DLVIG 525 (576)
||+|+.
T Consensus 152 fD~v~~ 157 (291)
T 3hp7_A 152 PSFASI 157 (291)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 345
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=79.31 E-value=2 Score=43.05 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 126 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~ 126 (576)
++|+..|++|||++++|..|+.++|=| ++.-++.++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd--~~~A~e~L~ 251 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWD--VETATELLL 251 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHh
Confidence 578899999999999999999999886 555555554
No 346
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=79.22 E-value=5.9 Score=39.81 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
..+.+|||+-||.|.+...+.+.+-.. .++++|+ +......+......+.. ...+..+|+.+- +. .+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~------~~ 248 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----LP------VT 248 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS------CC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC-EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----CC------CC
Confidence 456899999999999999988874222 3678999 88777777665443222 122445666431 11 24
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
+|+|+.......++
T Consensus 249 ~D~v~~~~vl~~~~ 262 (374)
T 1qzz_A 249 ADVVLLSFVLLNWS 262 (374)
T ss_dssp EEEEEEESCGGGSC
T ss_pred CCEEEEeccccCCC
Confidence 89998766544443
No 347
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=79.13 E-value=2.8 Score=41.29 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=51.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
..+.+|||+-||.|.+...+.+. +. -++++|++ ......+......+..+ ..+..+|+.+... .
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~ 230 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---------G 230 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC---------C
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC---------C
Confidence 55789999999999999988876 44 36789999 66666665543322111 2234566654321 1
Q ss_pred CCccEEEecCCCCCc
Q 008149 518 GSIDFVICQNSVPQI 532 (576)
Q Consensus 518 g~~DLVIGGpPCQ~F 532 (576)
+++|+|+....-..+
T Consensus 231 ~~~D~v~~~~~l~~~ 245 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHF 245 (335)
T ss_dssp SCEEEEEEESCGGGS
T ss_pred CCCcEEEEcchhccC
Confidence 248999876655554
No 348
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=78.68 E-value=1.5 Score=40.36 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=46.0
Q ss_pred hccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccccccc
Q 008149 424 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 503 (576)
Q Consensus 424 f~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~ 503 (576)
|....+...+..|... +.+.+|||+-||.|.+...+ +. .+.++|+++.. ..+..+|+.
T Consensus 50 ~~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l---~~---~v~~~D~s~~~---------------~~~~~~d~~ 107 (215)
T 2zfu_A 50 WPLQPVDRIARDLRQR-PASLVVADFGCGDCRLASSI---RN---PVHCFDLASLD---------------PRVTVCDMA 107 (215)
T ss_dssp SSSCHHHHHHHHHHTS-CTTSCEEEETCTTCHHHHHC---CS---CEEEEESSCSS---------------TTEEESCTT
T ss_pred cchhHHHHHHHHHhcc-CCCCeEEEECCcCCHHHHHh---hc---cEEEEeCCCCC---------------ceEEEeccc
Confidence 3333333344444433 45678999999999987765 33 37889999871 114456776
Q ss_pred ccChhhHHHhhhccCCccEEEecC
Q 008149 504 ALTTKKFESLIHKLGSIDFVICQN 527 (576)
Q Consensus 504 ~lt~~~Ie~l~~~~g~~DLVIGGp 527 (576)
++.. ..+.||+|+...
T Consensus 108 ~~~~--------~~~~fD~v~~~~ 123 (215)
T 2zfu_A 108 QVPL--------EDESVDVAVFCL 123 (215)
T ss_dssp SCSC--------CTTCEEEEEEES
T ss_pred cCCC--------CCCCEeEEEEeh
Confidence 6531 124699999754
No 349
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=78.51 E-value=0.63 Score=45.05 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
.+.+||||=||.|.+...+...|+ ..|+++|+++.+.+..+.|..
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~ 99 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLK 99 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHh
Confidence 467899999999888877777886 458999999999998887653
No 350
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=78.42 E-value=4.7 Score=39.56 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
..|.+||||-||.|.+..-+.+. |=. -.|+++|+++...+.++..-.. .++...+..|..+... .....+.
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~-G~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~~-----~~~~~~~ 147 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPR-GRIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPEK-----YRHLVEG 147 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGGG-----GTTTCCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCccc-----cccccce
Confidence 45899999999999999888753 533 2488999999988877654321 1222234556654332 1112357
Q ss_pred ccEEEecCCCC
Q 008149 520 IDFVICQNSVP 530 (576)
Q Consensus 520 ~DLVIGGpPCQ 530 (576)
+|+|+.-.+.-
T Consensus 148 vDvVf~d~~~~ 158 (233)
T 4df3_A 148 VDGLYADVAQP 158 (233)
T ss_dssp EEEEEECCCCT
T ss_pred EEEEEEeccCC
Confidence 99998655543
No 351
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=77.81 E-value=1 Score=44.61 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=28.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHH
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 478 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~ 478 (576)
++.+.+||||=||.||++..+.+.| .|++||+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gvD~s~m 106 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRP----HVMDVRAYTL 106 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcC----cEEEEECchh
Confidence 3457899999999999998887763 3789999984
No 352
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=77.69 E-value=2.5 Score=40.30 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=48.7
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHH------HHHHHHHHhhhcCC-CCCcccccc-ccccChhhHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSET------NRRILKRWWESSGQ-TGELVQIED-IQALTTKKFE 511 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~------a~~t~k~~~~~tn~-~g~l~~~~D-I~~lt~~~Ie 511 (576)
+.+.+|||+-||.|.+...+.+. |-. ..|+++|+++. .....+......+. ....+...| +... .+.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~ 117 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGP 117 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGG
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCC
Confidence 34679999999999999888776 422 24789999985 45555554432211 111233444 2211 111
Q ss_pred HhhhccCCccEEEecCCCC
Q 008149 512 SLIHKLGSIDFVICQNSVP 530 (576)
Q Consensus 512 ~l~~~~g~~DLVIGGpPCQ 530 (576)
-..+.||+|+......
T Consensus 118 ---~~~~~fD~v~~~~~l~ 133 (275)
T 3bkx_A 118 ---IADQHFDRVVLAHSLW 133 (275)
T ss_dssp ---GTTCCCSEEEEESCGG
T ss_pred ---CCCCCEEEEEEccchh
Confidence 0125799999765543
No 353
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=77.00 E-value=1.5 Score=42.86 Aligned_cols=28 Identities=14% Similarity=0.430 Sum_probs=25.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCC
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKT 116 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da 116 (576)
.+|+..|++|||+++.|..|+.+||-|.
T Consensus 170 ~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 170 HDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 3588899999999999999999999985
No 354
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=76.56 E-value=1.6 Score=45.86 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=33.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 128 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aa 128 (576)
..+++..|+.|||++++|..||..++.+ ++.=++.++..
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn--~~~A~e~L~~g 206 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSS--TTHHHHTTTTS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 4567889999999999999999999985 56668888765
No 355
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.54 E-value=2.7 Score=37.04 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=31.6
Q ss_pred hhhhHHHhcC-CCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 17 IEKRASLLMM-NFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 17 s~~r~~li~M-GFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
.++...|+.| ||+++.+.+|+.+.+- | ++.-+++|+.
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ng-D-l~~AI~~Lle 77 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNG-D-VNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-C-HHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCC-C-HHHHHHHHHh
Confidence 5678889999 9999999999999876 3 6777888884
No 356
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=76.40 E-value=2 Score=40.92 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=29.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 126 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~ 126 (576)
..+++..|+.|||+++.|..|+..|+.+..+ =+++++
T Consensus 130 e~eaI~rL~~mGF~r~~viqA~~ac~knee~--Aan~L~ 166 (171)
T 2qsf_X 130 DDQAISRLCELGFERDLVIQVYFACDKNEEA--AANILF 166 (171)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHH--HHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHH--HHHHHH
Confidence 4578889999999999999999999988332 244444
No 357
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=76.31 E-value=6 Score=39.79 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=50.5
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
++.+.+|||+-||.|.+...+.+..=.. -++++|+ +......+......+..+ ..+..+|+.+.. ++
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 255 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES----------YP 255 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC----------CC
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCC-eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC----------CC
Confidence 4567899999999999999988773222 3678999 887777776654432222 223456665432 12
Q ss_pred CccEEEecCCCCCc
Q 008149 519 SIDFVICQNSVPQI 532 (576)
Q Consensus 519 ~~DLVIGGpPCQ~F 532 (576)
+.|+|+.......+
T Consensus 256 ~~D~v~~~~vlh~~ 269 (359)
T 1x19_A 256 EADAVLFCRILYSA 269 (359)
T ss_dssp CCSEEEEESCGGGS
T ss_pred CCCEEEEechhccC
Confidence 33777765544433
No 358
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=75.87 E-value=4.6 Score=37.96 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=46.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
+.+.+||||=||.|....-|.+.+=. ..|+++|+++.+.+.+...-... .......+|+.+... . ....+.|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~--~---~~~~~~f 127 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWK--Y---SGIVEKV 127 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGG--T---TTTCCCE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchh--h---cccccce
Confidence 35679999999999998877654212 24899999997644333221111 112234567665321 0 0012579
Q ss_pred cEEEec
Q 008149 521 DFVICQ 526 (576)
Q Consensus 521 DLVIGG 526 (576)
|+|+..
T Consensus 128 D~V~~~ 133 (210)
T 1nt2_A 128 DLIYQD 133 (210)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999865
No 359
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=75.74 E-value=1.4 Score=44.03 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=28.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHH
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 478 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~ 478 (576)
++.+.+||||=||.||++..+.+.| .|++||+++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~m 114 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQP----NVREVKAYTL 114 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHcC----CEEEEECchh
Confidence 3457899999999999998887773 3789999984
No 360
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=75.46 E-value=1.6 Score=42.20 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 482 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t 482 (576)
+.+.+|||+-||.|++...|.+.|.. .|+++|+++.....
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~ 75 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAW 75 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCH
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHH
Confidence 35678999999999999999988863 58899999876543
No 361
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=74.14 E-value=8.6 Score=38.45 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=50.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
..+.+|||+-||.|.+...+.+.+-.+ .++.+|+ +......+.+....+.. ...+..+|+.+- ++ .+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~------~~ 249 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----LP------RK 249 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS------SC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----CC------CC
Confidence 456799999999999999998876443 3667898 77666666655433222 122445666431 11 24
Q ss_pred ccEEEecCCCCCc
Q 008149 520 IDFVICQNSVPQI 532 (576)
Q Consensus 520 ~DLVIGGpPCQ~F 532 (576)
+|+|+.......+
T Consensus 250 ~D~v~~~~vl~~~ 262 (360)
T 1tw3_A 250 ADAIILSFVLLNW 262 (360)
T ss_dssp EEEEEEESCGGGS
T ss_pred ccEEEEcccccCC
Confidence 8888876554433
No 362
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=72.76 E-value=4.5 Score=35.24 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=35.6
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHH----hCCC-CcHHHHHHHHHHhhh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDK----LGKD-APVYELVDFITAAQI 58 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe----~Ge~-~~~~~Ile~Ll~~q~ 58 (576)
.+.+....+.|||+...|.++|+. +|.. ..++.||..||..+.
T Consensus 27 ~s~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 27 QNPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp HCTHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 556788889999999999999987 4554 568999999997765
No 363
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=72.16 E-value=4.3 Score=42.32 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=55.1
Q ss_pred HHhhhhhccc--cchhhhcccc--ccCC--CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC
Q 008149 418 ESLRHCFQTD--TLGYHLSVLK--SMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG 491 (576)
Q Consensus 418 k~Lg~sf~vd--tv~~~lsvLK--~~f~--~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn 491 (576)
|.||-.|=+| ++..+...+. +.+. .+.+||++-.|.|.++..|...+- .+-|+++|+|+.....++....
T Consensus 28 k~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~~--- 103 (353)
T 1i4w_A 28 FFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE--- 103 (353)
T ss_dssp CGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT---
T ss_pred CCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhcc---
Confidence 4557666332 3444444432 2222 257899999999999999997521 1348899999999988876441
Q ss_pred CCCCccccccccccC
Q 008149 492 QTGELVQIEDIQALT 506 (576)
Q Consensus 492 ~~g~l~~~~DI~~lt 506 (576)
...-.++.+|+-+++
T Consensus 104 ~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 104 GSPLQILKRDPYDWS 118 (353)
T ss_dssp TSSCEEECSCTTCHH
T ss_pred CCCEEEEECCccchh
Confidence 222336779996554
No 364
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=71.64 E-value=9.1 Score=39.60 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=48.0
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCCC--cHHHHHHHHHHhhhcccccccC----CCCCCCCCCCCCCCchhhhhhhhH
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKDA--PVYELVDFITAAQISENFEKET----DDAPHDNDGTNEDKSDETLYGTME 90 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~--~~~~Ile~Ll~~q~l~~~~~e~----~ds~~~~~~~ne~~~~e~~~~~~~ 90 (576)
......|.+|||+++.|.++|..+-.-- .+..++.+|.. ++-+...= --...-+. .+.+. -..
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~---LGls~e~V~kiL~k~P~lL~-----~s~e~---L~~ 115 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFIL---LGLNPEPVCVVLKKSPQLLK-----LPIMQ---MRK 115 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHH---TTCCHHHHHHHHHHCGGGGG-----SCHHH---HHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHH---cCCCHHHHHHHHHhChhhcc-----CCHHH---HHH
Confidence 3456678899999999999999975432 12334444442 32111000 00000000 00111 123
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCC
Q 008149 91 ITLQLLEMGFSENQVSLAIEKFGS 114 (576)
Q Consensus 91 k~~~L~~MGFseeEas~AI~r~G~ 114 (576)
++..|.++||+++++...|.+|..
T Consensus 116 ~l~fL~~lGl~~~~i~~ll~~~P~ 139 (335)
T 4fp9_B 116 RSSYLQKLGLGEGKLKRVLYCCPE 139 (335)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHCGG
T ss_pred HHHHHHHcCCCHHHHHHHHHhCch
Confidence 445788999999999988888743
No 365
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=70.98 E-value=3 Score=42.54 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=34.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCH---HHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE---TNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~---~a~~t~k~~~ 487 (576)
.+-.|||.|||.|..-++..++|-+ .+++|+++ ..+.+-+..+
T Consensus 242 ~~~~vlDpF~GsGtt~~aa~~~~r~---~ig~e~~~~~~~~~~~~~~Rl 287 (319)
T 1eg2_A 242 PGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQLTFL 287 (319)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHHHHHC
T ss_pred CCCEEEecCCCCCHHHHHHHHcCCc---EEEEECCccHHHHHHHHHHHH
Confidence 4567999999999999999999964 57899999 6666555444
No 366
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=69.77 E-value=3.8 Score=39.61 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=30.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHh-CCCCChhhhhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKF-GSKTPISELADK 124 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~-G~da~i~eLvD~ 124 (576)
.|-+..|+.+||++.||..|+.++ .++.++++|+-.
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lir~ 197 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKIARPDASSETLIRE 197 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHHHH
Confidence 467779999999999999999998 556778887654
No 367
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=68.37 E-value=6.3 Score=37.53 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=38.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHH-HH---HHHHhhhcCCCCCccccccccccC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR-RI---LKRWWESSGQTGELVQIEDIQALT 506 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~-~t---~k~~~~~tn~~g~l~~~~DI~~lt 506 (576)
.+-+|||+=||.|.+...+.+..-. ..|+++|+++.+. +. -+......+.+...+..+|+.++.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~ 91 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP 91 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh
Confidence 4568999999999999888744322 3478999994432 21 122111122222334567777774
No 368
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=68.00 E-value=4.6 Score=43.31 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=32.6
Q ss_pred HHHHH-hcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149 92 TLQLL-EMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 129 (576)
Q Consensus 92 ~~~L~-~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq 129 (576)
+..|+ .-|=+++|+..+++++|.++-.+.|||=|+..-
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~e~~~r~ 70 (419)
T 3sso_A 32 VQDVVRLAGGHDSELRELTQKYDPAMISRLLVAEILSRC 70 (419)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHhhCHHHHHHHHHHHHHhcc
Confidence 33444 789999999999999999999999999998776
No 369
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=67.16 E-value=1.9 Score=43.51 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=26.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET 475 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEi 475 (576)
++.+.+||||=||.||++.-+.+.| .|++||+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~ 111 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLK----NVREVKG 111 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST----TEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcC----CEEEEec
Confidence 4456899999999999999888775 2678888
No 370
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=66.16 E-value=9.1 Score=39.22 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=34.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 484 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k 484 (576)
.+.+|||+=||.|.+...|.+.|.+ |+++|+++...+..+
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~~---v~gvD~s~~~~~~a~ 146 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGVR---HLGFEPSSGVAAKAR 146 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTCE---EEEECCCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCc---EEEECCCHHHHHHHH
Confidence 5689999999999999999999973 689999998776654
No 371
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=65.12 E-value=13 Score=37.85 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=51.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
+-.+||.-+|.||-+.++-+.+. .|+++|.|+.+....+. ... ....++.++-.++.. .+.++ ..+.||.
T Consensus 23 gg~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~-~L~~~--g~~~vDg 92 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKR-HLAAL--GVERVDG 92 (285)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHH-HHHHT--TCSCEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHH-HHHHc--CCCCcCE
Confidence 44699999999999999988753 37899999999887765 422 112234555554432 12111 2357999
Q ss_pred EEecCCCC
Q 008149 523 VICQNSVP 530 (576)
Q Consensus 523 VIGGpPCQ 530 (576)
|+...++.
T Consensus 93 IL~DLGvS 100 (285)
T 1wg8_A 93 ILADLGVS 100 (285)
T ss_dssp EEEECSCC
T ss_pred EEeCCccc
Confidence 99865543
No 372
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=64.28 E-value=6.7 Score=38.29 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHh---CCCCChhhhhHhHh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKF---GSKTPISELADKIF 126 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~---G~da~i~eLvD~I~ 126 (576)
.|-+..|+.+||++.||..|+.++ .++.++++|+-...
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~AL 205 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSAL 205 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 467779999999999999999998 45678888765543
No 373
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=63.27 E-value=17 Score=36.55 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=44.1
Q ss_pred CCCCcccccCC------CCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc-ccccccccChhhHHHh
Q 008149 441 PGGLTMLSVFS------GIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV-QIEDIQALTTKKFESL 513 (576)
Q Consensus 441 ~~~l~VLsLFS------GiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~-~~~DI~~lt~~~Ie~l 513 (576)
+.+.+||||=| |.|+ .+..+.+|-. ..|+++|+++. + . +..+ +.+|+.++...
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~-~~V~gvDis~~----v------~---~v~~~i~gD~~~~~~~----- 121 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTG-TLLVDSDLNDF----V------S---DADSTLIGDCATVHTA----- 121 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH-HHHHHHSCTT-CEEEEEESSCC----B------C---SSSEEEESCGGGCCCS-----
T ss_pred CCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCC-CEEEEEECCCC----C------C---CCEEEEECccccCCcc-----
Confidence 45789999999 4477 6666776522 24789999988 1 1 2335 67898876421
Q ss_pred hhccCCccEEEecCCC
Q 008149 514 IHKLGSIDFVICQNSV 529 (576)
Q Consensus 514 ~~~~g~~DLVIGGpPC 529 (576)
+.||+|+.-.++
T Consensus 122 ----~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 122 ----NKWDLIISDMYD 133 (290)
T ss_dssp ----SCEEEEEECCCC
T ss_pred ----CcccEEEEcCCc
Confidence 479999975443
No 374
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.11 E-value=7.3 Score=30.51 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149 90 EITLQLLEMGFS-ENQVSLAIEKFGSKTPISELADKIFSG 128 (576)
Q Consensus 90 ~k~~~L~~MGFs-eeEas~AI~r~G~da~i~eLvD~I~Aa 128 (576)
.++..|.+|||. ++.-..|+.++|-+ |+-.|+-++..
T Consensus 11 ~~L~~L~eMGF~D~~~N~~aL~~~~gn--v~~aI~~Ll~~ 48 (54)
T 2cp8_A 11 ALMAHLFEMGFCDRQLNLRLLKKHNYN--ILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHTTTTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhc
Confidence 366789999995 55555777777764 55555655543
No 375
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=59.82 E-value=9.7 Score=31.32 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=26.2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCC
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKFGSKTP 117 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~ 117 (576)
..+|+.+|..-|-+++||..|+.|.|..++
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 346888999999999999999999998654
No 376
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=59.01 E-value=8.5 Score=40.66 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=50.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149 440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+..|++||||=|.-||.+.-+-+.|.. |+|||+.+..-... ..++...+.+|..++... .+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~---V~aVD~~~l~~~l~-------~~~~V~~~~~d~~~~~~~--------~~~ 270 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMW---VYSVDNGPMAQSLM-------DTGQVTWLREDGFKFRPT--------RSN 270 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCE---EEEECSSCCCHHHH-------TTTCEEEECSCTTTCCCC--------SSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCE---EEEEEhhhcChhhc-------cCCCeEEEeCccccccCC--------CCC
Confidence 456899999999999999999888863 78999877653222 122333455666655432 257
Q ss_pred ccEEEecCCCCC
Q 008149 520 IDFVICQNSVPQ 531 (576)
Q Consensus 520 ~DLVIGGpPCQ~ 531 (576)
+|+|+.==-|++
T Consensus 271 ~D~vvsDm~~~p 282 (375)
T 4auk_A 271 ISWMVCDMVEKP 282 (375)
T ss_dssp EEEEEECCSSCH
T ss_pred cCEEEEcCCCCh
Confidence 999987555543
No 377
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=56.62 E-value=32 Score=35.52 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=49.1
Q ss_pred hhhhHHHhcCCCChHHHHHHHHHhCCC--CcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhh----hhH
Q 008149 17 IEKRASLLMMNFSVNEVDFALDKLGKD--APVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG----TME 90 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe~Ge~--~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~----~~~ 90 (576)
..+.++|...||+.+.|.++|..+-.= -+++.|-..|-..+.++-.+.+-.. -. . - .+..+.- ...
T Consensus 79 ~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~---ll-~--~--~P~lL~~s~e~i~~ 150 (335)
T 4fp9_B 79 LDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKR---VL-Y--C--CPEIFTMRQQDIND 150 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHH---HH-H--H--CGGGGTSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHH---HH-H--h--CchhhccChHHHHH
Confidence 346788889999999999999984221 1245554444444444322100000 00 0 0 0011100 123
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHhC
Q 008149 91 ITLQLL-EMGFSENQVSLAIEKFG 113 (576)
Q Consensus 91 k~~~L~-~MGFseeEas~AI~r~G 113 (576)
++..|. .|||+++||..++-+|-
T Consensus 151 ~v~~L~~~lGfS~~ev~~mv~r~P 174 (335)
T 4fp9_B 151 TVRLLKEKCLFTVQQVTKILHSCP 174 (335)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCC
Confidence 445564 89999999998888764
No 378
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=56.29 E-value=8.6 Score=39.19 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=40.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 490 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t 490 (576)
+..-+||||=||.|=+++.+..+.- -..++++|||+.+..+.+.+....
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~ 179 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRL 179 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHT
T ss_pred CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhc
Confidence 4467999999999999999988743 256899999999999999887543
No 379
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=55.51 E-value=5.7 Score=45.44 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=53.2
Q ss_pred ccccccCCC---CCcccccCCCCChhHH----HHHHcC---------CceeeEEEeeCCHHHHHHHHHHhhhcCCCC-Cc
Q 008149 434 SVLKSMFPG---GLTMLSVFSGIGGAEV----TLHRLG---------IKLKGVISIETSETNRRILKRWWESSGQTG-EL 496 (576)
Q Consensus 434 svLK~~f~~---~l~VLsLFSGiGG~sl----GL~~aG---------i~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l 496 (576)
..+++.++. ...|+++=||-|-++. |.+.+| -. .-|+|||.++.|..+++..-. ++..+ ..
T Consensus 398 ~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~-~kVyAVEknp~A~~~l~~~~~-Ng~~d~Vt 475 (745)
T 3ua3_A 398 GALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLK-VKLYIVEKNPNAIVTLKYMNV-RTWKRRVT 475 (745)
T ss_dssp HHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCE-EEEEEEECCHHHHHHHHHHHH-HTTTTCSE
T ss_pred HHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccc-cEEEEEeCChHHHHHHHHHHh-cCCCCeEE
Confidence 344555542 4679999999999974 223344 22 258999999988766665322 11212 33
Q ss_pred cccccccccChhhHHHhhhccCCccEEEecC
Q 008149 497 VQIEDIQALTTKKFESLIHKLGSIDFVICQN 527 (576)
Q Consensus 497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGp 527 (576)
++.+|++++..-. . ....+.+||||.--
T Consensus 476 VI~gd~eev~lp~-~--~~~~ekVDIIVSEl 503 (745)
T 3ua3_A 476 IIESDMRSLPGIA-K--DRGFEQPDIIVSEL 503 (745)
T ss_dssp EEESCGGGHHHHH-H--HTTCCCCSEEEECC
T ss_pred EEeCchhhccccc-c--cCCCCcccEEEEec
Confidence 5678888875310 0 01235799998543
No 380
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=54.83 E-value=7.5 Score=39.04 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=32.8
Q ss_pred ccccccCCC-CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149 434 SVLKSMFPG-GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 485 (576)
Q Consensus 434 svLK~~f~~-~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~ 485 (576)
..+.+++|. .-+.++.|+|.|+....+. - +.++.+|+|+...+.|+.
T Consensus 26 ~~i~~~lp~~~~~yvEpF~GggaV~~~~~--~---~~~i~ND~n~~Lin~y~~ 73 (284)
T 2dpm_A 26 PVIRELIPKTYNRYFEPFVGGGALFFDLA--P---KDAVINDFNAELINCYQQ 73 (284)
T ss_dssp HHHHHHSCSSCSCEEETTCTTCHHHHHHC--C---SEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhccccCEEEeecCCccHHHHhhh--c---cceeeeecchHHHHHHHH
Confidence 334455554 3579999999888766552 2 457889999988877753
No 381
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=54.10 E-value=6.1 Score=39.50 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=33.4
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 485 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~ 485 (576)
+..+.+++|..-+.++.|+|.|+....+ . .+.++.+|+|+...+.|+.
T Consensus 18 ~~~i~~~~p~~~~yvEpF~Ggg~V~~~~--~---~~~~i~ND~n~~lin~y~~ 65 (278)
T 2g1p_A 18 LDDIKRHLPKGECLVEPFVGAGSVFLNT--D---FSRYILADINSDLISLYNI 65 (278)
T ss_dssp HHHHHHHCCCCSEEEETTCTTCHHHHTC--C---CSEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhccccCeEEeeccCccHHHHhh--c---ccceEEEeccHHHHHHHHH
Confidence 3344555665568999999988765433 2 2457889999998876664
No 382
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=53.80 E-value=15 Score=36.79 Aligned_cols=44 Identities=7% Similarity=0.016 Sum_probs=36.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 488 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 488 (576)
+.+-+||||=||.|=+++++. .+ ..++++|||+....+.+++..
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~---~~y~a~DId~~~i~~ar~~~~ 147 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GI---ASVWGCDIHQGLGDVITPFAR 147 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TC---SEEEEEESBHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cC---CeEEEEeCCHHHHHHHHHHHH
Confidence 446799999999999999988 33 358999999999999998754
No 383
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=52.57 E-value=50 Score=30.21 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=45.4
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCc--HHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAP--VYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL 93 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~--~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~ 93 (576)
..+++..|...||+++.|+.||+.+=+.+- .....+..+....... ++. .++.
T Consensus 34 ~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~------------------------~G~-~~I~ 88 (162)
T 3dfg_A 34 KKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSG------------------------YGP-LHIR 88 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT------------------------CCH-HHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc------------------------ccH-HHHH
Confidence 456777788888888887777777633221 2333344432211100 111 2444
Q ss_pred -HHHhcCCCHHHHHHHHHHhC
Q 008149 94 -QLLEMGFSENQVSLAIEKFG 113 (576)
Q Consensus 94 -~L~~MGFseeEas~AI~r~G 113 (576)
.|..-|++++-|..|++.+.
T Consensus 89 ~eL~~KGI~~~~I~~al~~~~ 109 (162)
T 3dfg_A 89 AELGTHGLDSDAVSAAMATFE 109 (162)
T ss_dssp HHHHHTTCCHHHHHHHHTTCC
T ss_pred HHHHHcCCCHHHHHHHHHhCc
Confidence 79999999999999999885
No 384
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=51.33 E-value=14 Score=35.10 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=29.7
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 55 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~ 55 (576)
+....|..|||++..|.+|...++.+ .+.=+++||.
T Consensus 132 eaI~rL~~mGF~r~~viqA~~ac~kn--ee~Aan~L~~ 167 (171)
T 2qsf_X 132 QAISRLCELGFERDLVIQVYFACDKN--EEAAANILFS 167 (171)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence 45677899999999999999998774 5666888874
No 385
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=48.15 E-value=42 Score=32.19 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=38.9
Q ss_pred CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC--CCC-cccccccccc
Q 008149 443 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ--TGE-LVQIEDIQAL 505 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~--~g~-l~~~~DI~~l 505 (576)
.-+||++=| |.-++-+.++ | ..|++||+|+.-.+..+.||...+. ... .++.+|+.+.
T Consensus 31 a~~VLEiGt--GySTl~lA~~~~---g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~ 92 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAELPG---KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT 92 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTSTT---CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred CCEEEEECc--hHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence 457888755 5555555454 3 3489999999999999999987653 222 2556786554
No 386
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=46.71 E-value=26 Score=33.66 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=38.5
Q ss_pred hHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEe
Q 008149 456 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVIC 525 (576)
Q Consensus 456 ~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~----l~~~~g~~DLVIG 525 (576)
....|.+.|.+ |+.++.++...+.+..-....+.........||++- +.++. ....+|.+|+++-
T Consensus 24 iA~~la~~Ga~---Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~--~~v~~~~~~~~~~~G~iD~lvn 92 (256)
T 4fs3_A 24 VAKVLDQLGAK---LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSD--EEVINGFEQIGKDVGNIDGVYH 92 (256)
T ss_dssp HHHHHHHTTCE---EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCH--HHHHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCH--HHHHHHHHHHHHHhCCCCEEEe
Confidence 35567789986 345677766555444433333333344556788754 33433 3346799999984
No 387
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=46.44 E-value=60 Score=31.51 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=25.1
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHhCC-----CCChhhhhHhHh
Q 008149 90 EITLQL-LEMGFSENQVSLAIEKFGS-----KTPISELADKIF 126 (576)
Q Consensus 90 ~k~~~L-~~MGFseeEas~AI~r~G~-----da~i~eLvD~I~ 126 (576)
.++..| .+|||+++|+..++.+|-. ...+..-.||+.
T Consensus 149 ~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~ 191 (270)
T 3m66_A 149 ENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVH 191 (270)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHH
Confidence 355544 6999999999999999742 124455555554
No 388
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=46.31 E-value=23 Score=30.67 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHh-----CCCCChhhhhHhHhhccc
Q 008149 91 ITLQLLEMGFSENQVSLAIEKF-----GSKTPISELADKIFSGQI 130 (576)
Q Consensus 91 k~~~L~~MGFseeEas~AI~r~-----G~da~i~eLvD~I~Aaq~ 130 (576)
.....+.|||....|..++.+= ..=.++++||+.++.++-
T Consensus 30 vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 30 MVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 4457889999999999999882 334489999999999984
No 389
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=46.16 E-value=6.7 Score=38.72 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=34.5
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 008149 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 486 (576)
Q Consensus 433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~ 486 (576)
+..+.+++|..-+.++.|+|.|+....+. .+ ++.+|+|+...+.|+.-
T Consensus 15 ~~~i~~~lP~~~~yvEpF~GggaV~~~~~-----~~-~viNDin~~li~~~~~i 62 (259)
T 1yf3_A 15 LPELKSHFPKYNRFVDLFCGGLSVSLNVN-----GP-VLANDIQEPIIEMYKRL 62 (259)
T ss_dssp HHHHHHTCCCCSEEEETTCTTCTTGGGSC-----SS-EEEECSCHHHHHHHHHH
T ss_pred HHHHHHhCcccCeEEEecCCccHHHHhcc-----cc-EEEecCChHHHHHHHHH
Confidence 34445556665689999999888755432 24 77899999988877653
No 390
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=45.59 E-value=17 Score=28.43 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.1
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHh
Q 008149 88 TMEITLQLLEMGFSENQVSLAIEKF 112 (576)
Q Consensus 88 ~~~k~~~L~~MGFseeEas~AI~r~ 112 (576)
...|+.+|..-|-+++||..||.|+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3468889999999999999999884
No 391
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=43.85 E-value=4.8 Score=38.55 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHh---CCCCChhhhh
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKF---GSKTPISELA 122 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~---G~da~i~eLv 122 (576)
.+-...|+.+||++.||..|+.++ .++.++++++
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~li 183 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 183 (191)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 356678999999999999999998 3355566554
No 392
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=43.67 E-value=24 Score=39.68 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=45.7
Q ss_pred CCcccccCCCCChhHHH----HHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149 443 GLTMLSVFSGIGGAEVT----LHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 517 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slG----L~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~ 517 (576)
...|+++=||-|-+... ..+.|-+++ |+|||.++.|..+.+..- .++..+ ..++.+|+++++.-
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp~A~~a~~~v~-~N~~~dkVtVI~gd~eev~LP--------- 426 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNPNAVVTLENWQ-FEEWGSQVTVVSSDMREWVAP--------- 426 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCHHHHHHHHHHH-HHTTGGGEEEEESCTTTCCCS---------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHHHH-hccCCCeEEEEeCcceeccCC---------
Confidence 35689999999987433 334454443 799999999877766431 111111 22567899888632
Q ss_pred CCccEEE
Q 008149 518 GSIDFVI 524 (576)
Q Consensus 518 g~~DLVI 524 (576)
..+||||
T Consensus 427 EKVDIIV 433 (637)
T 4gqb_A 427 EKADIIV 433 (637)
T ss_dssp SCEEEEE
T ss_pred cccCEEE
Confidence 3689888
No 393
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=43.36 E-value=36 Score=33.75 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 520 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~ 520 (576)
.+.+|||+=||.|.+...+.+..-.. .++.+|+ +......+.+....+... ..+..+|+.+... . ..+++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~~~ 249 (352)
T 3mcz_A 179 RARTVIDLAGGHGTYLAQVLRRHPQL-TGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN-----F--EGGAA 249 (352)
T ss_dssp TCCEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG-----G--TTCCE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-eEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc-----c--CCCCc
Confidence 36899999999999999998764332 3567899 555555555443322111 2234566654321 0 01358
Q ss_pred cEEEecCCCCCcc
Q 008149 521 DFVICQNSVPQIP 533 (576)
Q Consensus 521 DLVIGGpPCQ~FS 533 (576)
|+|+...-...++
T Consensus 250 D~v~~~~vlh~~~ 262 (352)
T 3mcz_A 250 DVVMLNDCLHYFD 262 (352)
T ss_dssp EEEEEESCGGGSC
T ss_pred cEEEEecccccCC
Confidence 9998766544443
No 394
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=41.95 E-value=24 Score=34.79 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=46.8
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCccE
Q 008149 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF 522 (576)
Q Consensus 444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL 522 (576)
.+|||+-||.|.+...+.+..-.. .++++|+ +......+..+...+. ....+..+|+.+ . + .+++|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~------~~~~D~ 236 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA-RGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E---V------PSNGDI 236 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C---C------CSSCSE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC-EEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C---C------CCCCCE
Confidence 799999999999999988763122 3678999 7666655554432110 111234455543 1 1 135888
Q ss_pred EEecCCCCCcc
Q 008149 523 VICQNSVPQIP 533 (576)
Q Consensus 523 VIGGpPCQ~FS 533 (576)
|+.......++
T Consensus 237 v~~~~vl~~~~ 247 (334)
T 2ip2_A 237 YLLSRIIGDLD 247 (334)
T ss_dssp EEEESCGGGCC
T ss_pred EEEchhccCCC
Confidence 88666554443
No 395
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=41.70 E-value=13 Score=35.90 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~ 487 (576)
.+.+|||+=||.|.+..-+...+. .-|+++|+++.+....+.+.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~ 114 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWL 114 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHH
Confidence 467899999999995543333222 24789999999988877654
No 396
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=41.67 E-value=32 Score=33.59 Aligned_cols=85 Identities=8% Similarity=0.084 Sum_probs=50.3
Q ss_pred CcccccCCCC---ChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh----hhHHHhhhc
Q 008149 444 LTMLSVFSGI---GGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT----KKFESLIHK 516 (576)
Q Consensus 444 l~VLsLFSGi---GG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~----~~Ie~l~~~ 516 (576)
-+||||=||. |-+...+.+..=. .-|+++|+++.....-+..... .....++.+|+.+... ..+...+ .
T Consensus 79 ~~vLDlGcG~pt~G~~~~~~~~~~p~-~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~-d 154 (274)
T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQSVNPD-ARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMI-D 154 (274)
T ss_dssp CEEEEETCCSCCSSCHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHC-C
T ss_pred CEEEEECCCCCCCChHHHHHHHhCCC-CEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccC-C
Confidence 5899999999 8777666554211 2378999999887766655422 1223356788876421 0000111 1
Q ss_pred cCCccEEEecCCCCCc
Q 008149 517 LGSIDFVICQNSVPQI 532 (576)
Q Consensus 517 ~g~~DLVIGGpPCQ~F 532 (576)
++.+|+|+...=.+-+
T Consensus 155 ~~~~d~v~~~~vlh~~ 170 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYL 170 (274)
T ss_dssp TTSCCEEEETTTGGGS
T ss_pred CCCCEEEEEechhhhC
Confidence 3478999866544433
No 397
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=41.33 E-value=5.6 Score=38.78 Aligned_cols=28 Identities=36% Similarity=0.370 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCC
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGSKT 116 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~da 116 (576)
.+++..|++|||+++.|..|+.++|-|.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~ 205 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNE 205 (216)
T ss_dssp ----------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCch
Confidence 4678899999999999999999999873
No 398
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=39.83 E-value=49 Score=32.17 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=52.4
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHH----hCCC--CcHHHHHHHHHHhhhcccccccCC----CCCCCCCCCCCCCchhhh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDK----LGKD--APVYELVDFITAAQISENFEKETD----DAPHDNDGTNEDKSDETL 85 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe----~Ge~--~~~~~Ile~Ll~~q~l~~~~~e~~----ds~~~~~~~ne~~~~e~~ 85 (576)
.|+..++|.+||++...|.|...- ++-+ ......+++|.. ++-+..+=. -...-+. .+.+.
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~---lG~~~~~i~~il~~~P~lL~-----~~~e~- 75 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKD---VGIEDNQLGAFLTKNHAIFS-----EDLEN- 75 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHH---HTCCGGGHHHHHHHCTTGGG-----SCHHH-
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHH---cCCCHHHHHHHHHhCChhhh-----CCHHH-
Confidence 467889999999999999988777 6654 124556666653 322211000 0000000 00111
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHhCC
Q 008149 86 YGTMEITLQLLEMGFSENQVSLAIEKFGS 114 (576)
Q Consensus 86 ~~~~~k~~~L~~MGFseeEas~AI~r~G~ 114 (576)
-..++..|.++|++++++..+|.+|-.
T Consensus 76 --l~p~v~~L~~~Gls~~~i~~~l~~~P~ 102 (270)
T 3m66_A 76 --LKTRVAYLHSKNFSKADVAQMVRKAPF 102 (270)
T ss_dssp --HHHHHHHHHHTTCCHHHHHHHHHHSTT
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHhCCH
Confidence 113556788999999999999887753
No 399
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=39.37 E-value=36 Score=33.09 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=31.5
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHh---CCCCcHHHHHHHHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFITA 55 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~---Ge~~~~~~Ile~Ll~ 55 (576)
.++..+.|+.+||++..+.+|+++. .++.++++++..-|.
T Consensus 164 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk 206 (212)
T 2ztd_A 164 RSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALS 206 (212)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4689999999999999999999987 334457777766553
No 400
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=37.99 E-value=19 Score=33.61 Aligned_cols=42 Identities=7% Similarity=0.006 Sum_probs=30.8
Q ss_pred cccCCCCCcccccCCCCC-hhHHHHHH-cCCceeeEEEeeCCHHHHH
Q 008149 437 KSMFPGGLTMLSVFSGIG-GAEVTLHR-LGIKLKGVISIETSETNRR 481 (576)
Q Consensus 437 K~~f~~~l~VLsLFSGiG-G~slGL~~-aGi~~k~vvavEid~~a~~ 481 (576)
...+..+-+||++=+|-| -.+.-|.. .|++ |.++||++.+..
T Consensus 30 ~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~---V~atDInp~Av~ 73 (153)
T 2k4m_A 30 IRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVD---LVLTDIKPSHGG 73 (153)
T ss_dssp HHHSCSSSEEEEETCTTCCHHHHHHHHHSCCE---EEEECSSCSSTT
T ss_pred HhcCCCCCcEEEEccCCChHHHHHHHHhCCCe---EEEEECCccccc
Confidence 333445679999977777 46667775 9986 678999998743
No 401
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=37.13 E-value=40 Score=31.39 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=43.8
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHH-HHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QLL 96 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~-~L~ 96 (576)
..+..|..-|.+.+.|+.|+++..+++..+.+...+-. -....... .. ...-.|+. +|.
T Consensus 88 ~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a~~l~~K--k~~~~~~~---------------~~---~~~~~K~~~~L~ 147 (177)
T 3e3v_A 88 VIKLNLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEK--LANRYSHD---------------SY---RNKQNKIKQSLL 147 (177)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHHHHHHHH--HHHHTTTS---------------CH---HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCchhHHHHHHHHHHH--HHhhccCC---------------Ch---HHHHHHHHHHHH
Confidence 35667778888888888888775433312222221111 00011000 01 11223554 899
Q ss_pred hcCCCHHHHHHHHHHhCCC
Q 008149 97 EMGFSENQVSLAIEKFGSK 115 (576)
Q Consensus 97 ~MGFseeEas~AI~r~G~d 115 (576)
.=||+-+.|..||..+..+
T Consensus 148 rrGF~~~~I~~vl~~l~~~ 166 (177)
T 3e3v_A 148 TKGFSYDIIDTIIQELDLI 166 (177)
T ss_dssp HTTCCHHHHHHHHHHHHHC
T ss_pred HCCCCHHHHHHHHHHCcCC
Confidence 9999999999999886544
No 402
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=36.20 E-value=68 Score=33.87 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=48.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-----C---CCccccccccccChhhHHHhh
Q 008149 443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-----T---GELVQIEDIQALTTKKFESLI 514 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-----~---g~l~~~~DI~~lt~~~Ie~l~ 514 (576)
+-+||=+=.|.||.-..+.+... +.|..||||+...+..+.|+...+. + ...++++|-.+. +++..
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f----l~~~~ 279 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV----LKRYA 279 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH----HHHHH
T ss_pred CCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH----HHhhh
Confidence 34677666677777665555543 5688899999999999988653211 0 011233443321 22111
Q ss_pred hccCCccEEEecCCCCC
Q 008149 515 HKLGSIDFVICQNSVPQ 531 (576)
Q Consensus 515 ~~~g~~DLVIGGpPCQ~ 531 (576)
...+.+|+||.=.+-.+
T Consensus 280 ~~~~~yDvIIvDl~D~~ 296 (381)
T 3c6k_A 280 KEGREFDYVINDLTAVP 296 (381)
T ss_dssp HHTCCEEEEEEECCSSC
T ss_pred hccCceeEEEECCCCCc
Confidence 22357999998755333
No 403
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=34.89 E-value=38 Score=33.29 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh----hccCCccEEEe
Q 008149 457 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSIDFVIC 525 (576)
Q Consensus 457 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~----~~~g~~DLVIG 525 (576)
...|.+.|.+ |+.++.++...+....-....+ .....+..||++- +.++.++ .++|.+|++|-
T Consensus 24 A~~la~~Ga~---Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~--~~v~~~~~~~~~~~G~iDiLVN 90 (254)
T 4fn4_A 24 AKKFALNDSI---VVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKK--KDVEEFVRRTFETYSRIDVLCN 90 (254)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSH--HHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCH--HHHHHHHHHHHHHcCCCCEEEE
Confidence 4567789985 4568888776554433332222 1223456888754 3444433 46799999994
No 404
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=34.83 E-value=29 Score=33.42 Aligned_cols=82 Identities=13% Similarity=0.200 Sum_probs=42.5
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHH-HHHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT-LQLL 96 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~-~~L~ 96 (576)
..+..|..-|++.+.|+.|+++.-+++.. +++..++. .-...... . +. ...-.|+ .+|.
T Consensus 131 ~I~~eL~~KGI~~~~I~~al~~~~~~~e~-e~a~~l~~-Kk~~~~~~--~-------------~~---~~~k~K~~~~L~ 190 (221)
T 3d5l_A 131 IIRQHLRQKGIGESDIDDALTQFTPEVQA-ELAKKLAL-KLFRRYRN--Q-------------PE---RRREQKVQQGLT 190 (221)
T ss_dssp HHHHHHHHTTCCHHHHHHHGGGCCHHHHH-HHHHHHHH-HHHHHTTT--S-------------CH---HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCHHHHH-HHHHHHHH-HHHhhccC--C-------------Ch---HHHHHHHHHHHH
Confidence 35667778899999999999887332211 12222221 00111100 0 00 1112344 4899
Q ss_pred hcCCCHHHHHHHHHHhCCCCChh
Q 008149 97 EMGFSENQVSLAIEKFGSKTPIS 119 (576)
Q Consensus 97 ~MGFseeEas~AI~r~G~da~i~ 119 (576)
.=||+-+.|..||..+..+..++
T Consensus 191 rrGFs~~~I~~vl~~~~~~~~~~ 213 (221)
T 3d5l_A 191 TKGFSSSVYEMIKDEVVPQPDLE 213 (221)
T ss_dssp HTTCCHHHHHHHTTC--------
T ss_pred hCCCCHHHHHHHHHhccchhhhh
Confidence 99999999999998776664444
No 405
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=33.74 E-value=57 Score=29.85 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=43.2
Q ss_pred hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHH-HHHH
Q 008149 18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT-LQLL 96 (576)
Q Consensus 18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~-~~L~ 96 (576)
..+..|..-|++.+.|+.|+++..+ +..+.+...+-. +.+.... . .. ..-.|+ .+|.
T Consensus 86 ~I~~eL~~KGI~~~~I~~al~~~~~-de~e~a~~l~~K-----k~~~~~~-----------~-~~----~~k~K~~~~L~ 143 (162)
T 3dfg_A 86 HIRAELGTHGLDSDAVSAAMATFEG-DWTENALDLIRR-----RFGEDGP-----------V-DL----AQRRKAADLLA 143 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTCCS-CHHHHHHHHHHH-----HHCTTCC-----------C-SH----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCcH-hHHHHHHHHHHH-----hcCCCCC-----------C-CH----HHHHHHHHHHH
Confidence 4567788889999999999988743 423333332221 1111000 0 00 112344 4899
Q ss_pred hcCCCHHHHHHHHHHh
Q 008149 97 EMGFSENQVSLAIEKF 112 (576)
Q Consensus 97 ~MGFseeEas~AI~r~ 112 (576)
.=||+-+.|..||...
T Consensus 144 rrGF~~~~I~~~l~~~ 159 (162)
T 3dfg_A 144 RRGFDGNSIRLATRFD 159 (162)
T ss_dssp HTTCCHHHHHHHTTC-
T ss_pred HCCCCHHHHHHHHhcC
Confidence 9999999999988643
No 406
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=33.42 E-value=24 Score=33.62 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=44.8
Q ss_pred CCcccccCCCCChhHHHHHHc----CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149 443 GLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 518 (576)
Q Consensus 443 ~l~VLsLFSGiGG~slGL~~a----Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g 518 (576)
+-+|||+=||.|+.+..|.+. +-. ..|++||+++...+..+. . .....++.+|+.++.. +..+ ...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~-~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~--l~~~--~~~ 151 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTT--FEHL--REM 151 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGG--GGGG--SSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCC-CEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHH--HHhh--ccC
Confidence 468999999999999988775 211 247899999886433321 1 1122356688876421 1111 112
Q ss_pred CccEEEe
Q 008149 519 SIDFVIC 525 (576)
Q Consensus 519 ~~DLVIG 525 (576)
.+|+|+-
T Consensus 152 ~fD~I~~ 158 (236)
T 2bm8_A 152 AHPLIFI 158 (236)
T ss_dssp CSSEEEE
T ss_pred CCCEEEE
Confidence 5898884
No 407
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=33.12 E-value=45 Score=34.56 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=32.8
Q ss_pred hhhhHHHhcCCCChHHHHHHHHH----hCCC-CcHHHHHHHHHHhhh
Q 008149 17 IEKRASLLMMNFSVNEVDFALDK----LGKD-APVYELVDFITAAQI 58 (576)
Q Consensus 17 s~~r~~li~MGFs~e~V~kAIqe----~Ge~-~~~~~Ile~Ll~~q~ 58 (576)
+.....-+.|||+.+.|.++|++ .|.. ..++.||+.||..+.
T Consensus 120 ~~~v~~~l~mGf~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~~~~ 166 (345)
T 3t6p_A 120 TPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLNAED 166 (345)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHhccc
Confidence 34556667999999999999874 4665 458999999997755
No 408
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=32.99 E-value=35 Score=33.37 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=36.7
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh----hhccCCccEEEe
Q 008149 457 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVIC 525 (576)
Q Consensus 457 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l----~~~~g~~DLVIG 525 (576)
...|.+.|.+ |+.++.++.....+.. ..........||++- +.++.+ ..++|.+|++|-
T Consensus 19 a~~la~~Ga~---V~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~--~~v~~~v~~~~~~~g~iDiLVN 81 (247)
T 3ged_A 19 CLDFLEAGDK---VCFIDIDEKRSADFAK-----ERPNLFYFHGDVADP--LTLKKFVEYAMEKLQRIDVLVN 81 (247)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHT-----TCTTEEEEECCTTSH--HHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHH-----hcCCEEEEEecCCCH--HHHHHHHHHHHHHcCCCCEEEE
Confidence 5667889985 4567888776544432 122233456788754 334433 346799999994
No 409
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=32.44 E-value=23 Score=34.34 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.6
Q ss_pred chhhhhHHHhcCCCChHHHHHHHHHhCCCC
Q 008149 15 LHIEKRASLLMMNFSVNEVDFALDKLGKDA 44 (576)
Q Consensus 15 ~~s~~r~~li~MGFs~e~V~kAIqe~Ge~~ 44 (576)
+-.++...|+.|||+.+.|..|+..+|=+-
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 346788999999999999999999987753
No 410
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=32.14 E-value=91 Score=30.01 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCCcccccCCCCChhHHHH----HHcCCcee-eEEEeeCCHHHHHHHHHHh
Q 008149 442 GGLTMLSVFSGIGGAEVTL----HRLGIKLK-GVISIETSETNRRILKRWW 487 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL----~~aGi~~k-~vvavEid~~a~~t~k~~~ 487 (576)
.+.+|||+=||.|.++..+ ...+-.+. .+.++|+++...+..+...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~ 102 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELV 102 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHH
Confidence 4579999999999776432 12111222 2489999999887776654
No 411
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=31.92 E-value=34 Score=34.76 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=22.8
Q ss_pred HHhcCCCHHHHHHHHHHhC------CCCChhhhhHhHhh
Q 008149 95 LLEMGFSENQVSLAIEKFG------SKTPISELADKIFS 127 (576)
Q Consensus 95 L~~MGFseeEas~AI~r~G------~da~i~eLvD~I~A 127 (576)
|..+||+++|+..++.+|- .+ .|..-.||+..
T Consensus 247 ~~~lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~ 284 (343)
T 3mva_O 247 LFSLGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLME 284 (343)
T ss_dssp HHTTTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHH
Confidence 3479999999988888763 24 36666777665
No 412
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=31.51 E-value=1.1e+02 Score=29.24 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=40.6
Q ss_pred hhhccccchhhhccccccCC----CCCcccccCCCCChhHH----HHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC
Q 008149 422 HCFQTDTLGYHLSVLKSMFP----GGLTMLSVFSGIGGAEV----TLHRLGIKLKGVISIETSETNRRILKRWWESSGQT 493 (576)
Q Consensus 422 ~sf~vdtv~~~lsvLK~~f~----~~l~VLsLFSGiGG~sl----GL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~ 493 (576)
+.|+.+-..+|.+.+++.+. .+.+|| +.-|.||+-. .|.+.|.+ |+.++.++.....+.......+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vl-ITGasggIG~~la~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~ 78 (286)
T 1xu9_A 3 HQHQHQHQHQHQQPLNEEFRPEMLQGKKVI-VTGASKGIGREMAYHLAKMGAH---VVVTARSKETLQKVVSHCLELGAA 78 (286)
T ss_dssp ------------CCCSSCCCGGGGTTCEEE-ESSCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCS
T ss_pred chhhccchhhhccccccCCChhhcCCCEEE-EeCCCcHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHhCCC
Confidence 34544444555555544332 122332 3344455432 35567875 455677765443332211111111
Q ss_pred CCccccccccccChhhHHHhh----hccCCccEEE
Q 008149 494 GELVQIEDIQALTTKKFESLI----HKLGSIDFVI 524 (576)
Q Consensus 494 g~l~~~~DI~~lt~~~Ie~l~----~~~g~~DLVI 524 (576)
...++..|+++. +.+..++ ..+|++|+||
T Consensus 79 ~~~~~~~Dl~d~--~~v~~~~~~~~~~~g~iD~li 111 (286)
T 1xu9_A 79 SAHYIAGTMEDM--TFAEQFVAQAGKLMGGLDMLI 111 (286)
T ss_dssp EEEEEECCTTCH--HHHHHHHHHHHHHHTSCSEEE
T ss_pred ceEEEeCCCCCH--HHHHHHHHHHHHHcCCCCEEE
Confidence 122455788753 2333332 3468999999
No 413
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=31.10 E-value=96 Score=31.28 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=51.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
+...+|||+=||.|.+...+.+..-.. .++.+|+ +......+.+....+..+ ..+..+|+.+ .+ ..+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~----~~------p~~ 268 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE----TI------PDG 268 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT----CC------CSS
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCC-eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC----CC------CCC
Confidence 456899999999999999998874333 3578999 777666666554332111 2234456541 11 126
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
+|+|+...-...++
T Consensus 269 ~D~v~~~~vlh~~~ 282 (369)
T 3gwz_A 269 ADVYLIKHVLHDWD 282 (369)
T ss_dssp CSEEEEESCGGGSC
T ss_pred ceEEEhhhhhccCC
Confidence 89998777665554
No 414
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=30.42 E-value=65 Score=32.65 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=49.2
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHh---CCCCcHHHHHHHHHHhhhcccccccCC----CCCCCCCCCCCCCchhhhhhh
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFITAAQISENFEKETD----DAPHDNDGTNEDKSDETLYGT 88 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~---Ge~~~~~~Ile~Ll~~q~l~~~~~e~~----ds~~~~~~~ne~~~~e~~~~~ 88 (576)
.+.+.++|..+||+.+.+.++-..+ -.++ .+.++++|..+ +-+..+-. ....-+.. +.+.+
T Consensus 19 ~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~-~~~vl~fL~~~---G~s~~~i~~iv~~~P~lL~~-----~~~~l--- 86 (343)
T 3mva_O 19 NEDLLKNLLTMGVDIDMARKRQPGVFHRMITN-EQDLKMFLLSK---GASKEVIASIISRYPRAITR-----TPENL--- 86 (343)
T ss_dssp -CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCC-HHHHHHHHHHT---TCCHHHHHHHHHHCGGGGGC-----CHHHH---
T ss_pred cHHHHHHHHHcCCCHHHHHHhCchhhccCccc-HHHHHHHHHHc---CCCHHHHHHHHHhCcHHHhC-----CHHHH---
Confidence 3458889999999988776653333 2234 67888888743 11110000 00000000 01111
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCC
Q 008149 89 MEITLQLLEMGFSENQVSLAIEKFGS 114 (576)
Q Consensus 89 ~~k~~~L~~MGFseeEas~AI~r~G~ 114 (576)
..+...|..+|++.+++..+|.++-.
T Consensus 87 ~p~l~fL~~lG~s~~~i~~il~~~P~ 112 (343)
T 3mva_O 87 SKRWDLWRKIVTSDLEIVNILERSPE 112 (343)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHCSH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCCH
Confidence 23556788999999999999888754
No 415
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=27.17 E-value=64 Score=31.65 Aligned_cols=64 Identities=17% Similarity=0.019 Sum_probs=36.7
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEec
Q 008149 457 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQ 526 (576)
Q Consensus 457 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~----l~~~~g~~DLVIGG 526 (576)
...|-+.|.+ |+.++.++........-....+ .....+..||++- +.++. ...++|.+|++|-.
T Consensus 26 a~~la~~Ga~---Vvi~~~~~~~~~~~~~~l~~~g-~~~~~~~~Dv~~~--~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 26 AEGLAAAGAR---VILNDIRATLLAESVDTLTRKG-YDAHGVAFDVTDE--LAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp HHHHHHTTCE---EEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCH--HHHHHHHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCH--HHHHHHHHHHHHHCCCCcEEEEC
Confidence 4667789985 4557888765433222222221 1223456788764 34433 33468999999953
No 416
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=26.65 E-value=38 Score=33.17 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=36.9
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 008149 457 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 525 (576)
Q Consensus 457 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIG 525 (576)
...|.+.|.+ |+.++.++.... ............||++ .+.+++++..+|.+|+++-
T Consensus 28 a~~la~~Ga~---Vv~~~~~~~~~~-------~~~~~~~~~~~~Dv~~--~~~v~~~~~~~g~iDiLVN 84 (242)
T 4b79_A 28 AMQFAELGAE---VVALGLDADGVH-------APRHPRIRREELDITD--SQRLQRLFEALPRLDVLVN 84 (242)
T ss_dssp HHHHHHTTCE---EEEEESSTTSTT-------SCCCTTEEEEECCTTC--HHHHHHHHHHCSCCSEEEE
T ss_pred HHHHHHCCCE---EEEEeCCHHHHh-------hhhcCCeEEEEecCCC--HHHHHHHHHhcCCCCEEEE
Confidence 4667889986 455677765321 1111222345678875 4668888888999999994
No 417
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=26.32 E-value=1.1e+02 Score=31.14 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc-----CCCCCccccccccccChhhHHHhhh
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-----GQTGELVQIEDIQALTTKKFESLIH 515 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t-----n~~g~l~~~~DI~~lt~~~Ie~l~~ 515 (576)
|+.-+||=+=.|.||....+.+.- .++-|..||||+...+..+.|+... +.+...++++|-.+.-. .
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~-------~ 153 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN-------Q 153 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS-------C
T ss_pred CCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh-------h
Confidence 556678777667777665554431 2356788999999999999887532 12233356677654421 1
Q ss_pred ccCCccEEEecCC
Q 008149 516 KLGSIDFVICQNS 528 (576)
Q Consensus 516 ~~g~~DLVIGGpP 528 (576)
....+|+||--.+
T Consensus 154 ~~~~yDvIi~D~~ 166 (294)
T 3o4f_A 154 TSQTFDVIISDCT 166 (294)
T ss_dssp SSCCEEEEEESCC
T ss_pred ccccCCEEEEeCC
Confidence 2357999997655
No 418
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=25.64 E-value=1.5e+02 Score=29.67 Aligned_cols=82 Identities=7% Similarity=0.016 Sum_probs=50.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccC-hhhHHHhhhccCC
Q 008149 442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALT-TKKFESLIHKLGS 519 (576)
Q Consensus 442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt-~~~Ie~l~~~~g~ 519 (576)
..-+|||+=||.|.+...+.+..-.. .++.+|+ +......+......+..+ ..+..+|+.+.. + + .+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~------p~~ 248 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP--F------PTG 248 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC-EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC--C------CCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC--C------CCC
Confidence 45789999999999999998753222 3678999 776666665543221111 123456665431 0 1 136
Q ss_pred ccEEEecCCCCCcc
Q 008149 520 IDFVICQNSVPQIP 533 (576)
Q Consensus 520 ~DLVIGGpPCQ~FS 533 (576)
+|+|+...-...++
T Consensus 249 ~D~v~~~~vlh~~~ 262 (363)
T 3dp7_A 249 FDAVWMSQFLDCFS 262 (363)
T ss_dssp CSEEEEESCSTTSC
T ss_pred cCEEEEechhhhCC
Confidence 78888766555443
No 419
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.34 E-value=92 Score=25.10 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=31.8
Q ss_pred hhhhhHHHhcCCCC---hHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 008149 16 HIEKRASLLMMNFS---VNEVDFALDKLGKDAPVYELVDFITAAQI 58 (576)
Q Consensus 16 ~s~~r~~li~MGFs---~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~ 58 (576)
......+|..| || .+.|..+++.+|. + ++.-++.||.++.
T Consensus 18 ~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G-~-vd~aId~LL~ms~ 60 (67)
T 2dhy_A 18 FNQAMDDFKTM-FPNMDYDIIECVLRANSG-A-VDATIDQLLQMNL 60 (67)
T ss_dssp SHHHHHHHHHH-CSSSCHHHHHHHHHHHTS-C-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-C-HHHHHHHHHhcCC
Confidence 44567888899 85 7889999999987 4 7888999997643
No 420
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=23.40 E-value=95 Score=25.48 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=29.2
Q ss_pred CCCCcccccchhhhhHHHhcCCCChHHHHHHHHHhCCCC
Q 008149 6 EEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDA 44 (576)
Q Consensus 6 ~~~~~~~~~~~s~~r~~li~MGFs~e~V~kAIqe~Ge~~ 44 (576)
++|+|-.-. -+.++++|..-|-+.++|+.|+++-|...
T Consensus 26 qdp~V~~sp-~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 26 QNSRVRQSP-LATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp CSTTGGGSC-HHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred CChhhhhCC-HHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 355555544 56677788899999999999999987753
No 421
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=23.17 E-value=1.2e+02 Score=28.60 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh----hccCCccEEEecC
Q 008149 457 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSIDFVICQN 527 (576)
Q Consensus 457 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~----~~~g~~DLVIGGp 527 (576)
...|.+.|.++ +.++.++.....++..-...+......+..|+++.. .++.++ ..+|.+|+||-..
T Consensus 26 a~~l~~~G~~V---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~v~~~~~~~~~~~g~id~li~~A 95 (266)
T 3oig_A 26 ARSLHEAGARL---IFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDA--EIETCFASIKEQVGVIHGIAHCI 95 (266)
T ss_dssp HHHHHHTTCEE---EEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHCCCEE---EEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHH--HHHHHHHHHHHHhCCeeEEEEcc
Confidence 45567889864 344555543333333222221112334567888653 343333 3568999999644
No 422
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=23.13 E-value=1e+02 Score=29.56 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=43.6
Q ss_pred hhhhhHHHhcCCCChHHHHHHHHHhCCCCc--HHHHHHHHHHhhhc-ccccccCCCCCCCCCCCCCCCchhhhhhhhHHH
Q 008149 16 HIEKRASLLMMNFSVNEVDFALDKLGKDAP--VYELVDFITAAQIS-ENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT 92 (576)
Q Consensus 16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~--~~~Ile~Ll~~q~l-~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~ 92 (576)
..++|..|...||+++.|+.||+.+=+.+- ...-.+..+..... ... +. .++
T Consensus 78 ~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~------------------------G~-~~I 132 (221)
T 3d5l_A 78 ESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK------------------------GP-GII 132 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC------------------------CH-HHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc------------------------cH-HHH
Confidence 456777777778877777777766533321 23344444432111 011 11 134
Q ss_pred H-HHHhcCCCHHHHHHHHHHh
Q 008149 93 L-QLLEMGFSENQVSLAIEKF 112 (576)
Q Consensus 93 ~-~L~~MGFseeEas~AI~r~ 112 (576)
. .|..-|++.+-|..|++.+
T Consensus 133 ~~eL~~KGI~~~~I~~al~~~ 153 (221)
T 3d5l_A 133 RQHLRQKGIGESDIDDALTQF 153 (221)
T ss_dssp HHHHHHTTCCHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 3 7999999999999999887
No 423
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=21.89 E-value=2.4e+02 Score=27.57 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=47.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149 441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 519 (576)
Q Consensus 441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~ 519 (576)
....+|||+=||.|.+...+.+..-.. .++.+|+ +......+.+....+..+ ..+..+|+.+ .++ .+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~p------~~ 235 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDL-SGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD----PLP------AG 235 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS----CCC------CS
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCC-eEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC----CCC------CC
Confidence 345799999999999999887754233 3567899 777666666554332111 2234455531 010 15
Q ss_pred ccEEEecCCCCCc
Q 008149 520 IDFVICQNSVPQI 532 (576)
Q Consensus 520 ~DLVIGGpPCQ~F 532 (576)
+|+|+...-...+
T Consensus 236 ~D~v~~~~vlh~~ 248 (332)
T 3i53_A 236 AGGYVLSAVLHDW 248 (332)
T ss_dssp CSEEEEESCGGGS
T ss_pred CcEEEEehhhccC
Confidence 7888765544333
No 424
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.37 E-value=3.3e+02 Score=24.51 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHH-HHHhcCCCHHHHHHHHHHhCC
Q 008149 91 ITL-QLLEMGFSENQVSLAIEKFGS 114 (576)
Q Consensus 91 k~~-~L~~MGFseeEas~AI~r~G~ 114 (576)
++. .|..-|.+++-|..||+.+..
T Consensus 84 ~I~~eL~~KGI~~~~i~~al~~~~~ 108 (159)
T 3c1d_A 84 RIRQELNQKGISREATEKAMREADI 108 (159)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCH
Confidence 443 799999999999999999865
No 425
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.62 E-value=1.3e+02 Score=27.20 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=39.1
Q ss_pred hhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHH-HHHHh
Q 008149 19 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT-LQLLE 97 (576)
Q Consensus 19 ~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~-~~L~~ 97 (576)
.+..|..-|.+.+.|+.|+++.-+ +..+.+.+ ++. -+.+.... .. ...-.|+ .+|..
T Consensus 85 I~~eL~~KGI~~~~i~~al~~~~~-d~~~~a~~-l~~----kk~~~~~~-------------~~---~~~~~K~~~~L~r 142 (159)
T 3c1d_A 85 IRQELNQKGISREATEKAMREADI-DWAALARD-QAT----RKYGEPLP-------------TV---FSEKVKIQRFLLY 142 (159)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHCC-CHHHHHHH-HHH----HHHCSSCC-------------CS---HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCH-hHHHHHHH-HHH----HHcCCCCC-------------CC---HHHHHHHHHHHHH
Confidence 456677778888888888888754 32322222 221 01111000 00 0112244 48999
Q ss_pred cCCCHHHHHHHHHHh
Q 008149 98 MGFSENQVSLAIEKF 112 (576)
Q Consensus 98 MGFseeEas~AI~r~ 112 (576)
=||+-+.|..+|..+
T Consensus 143 rGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 143 RGYLMEDIQDIWRNF 157 (159)
T ss_dssp TTCCHHHHTTCC---
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999998777654
No 426
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=20.47 E-value=98 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=25.1
Q ss_pred cCCCHHHHHHHHHHhCCCCChh-------hhhHhHhhcc
Q 008149 98 MGFSENQVSLAIEKFGSKTPIS-------ELADKIFSGQ 129 (576)
Q Consensus 98 MGFseeEas~AI~r~G~da~i~-------eLvD~I~Aaq 129 (576)
-||+.|||-.||.-||...|++ .|+|.|++..
T Consensus 27 ~GfspEEV~aAl~~~g~~~P~~WLk~ewp~ll~~V~~la 65 (162)
T 4dbg_B 27 AGACPEEIFSALQYSGTEVPLQWLRSELPYVLEMVAELA 65 (162)
T ss_dssp SCCCHHHHHHHHHHHTCCCCHHHHHHHSCSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3999999999997778888876 4566766543
Done!