BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008150
         (576 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
 pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
          Length = 129

 Score = 32.7 bits (73), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 67  DLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIE--IFEL 124
           D+ V +    F  H+  + + S Y  R +F         NN    +   P  ++   F+ 
Sbjct: 35  DVSVVVKGHAFKAHRAVLAASSSYF-RDLF---------NNSRSAVVELPAAVQPQSFQQ 84

Query: 125 VVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFS 173
           ++ FCY  ++ +   +   L   A FL++ + +++G     TE FL  S
Sbjct: 85  ILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKG-----TEFFLKVS 128


>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
          Length = 130

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 24/134 (17%)

Query: 32  GKPNRCIIFPANVSMVAEALER-RNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEY 90
           G  + CI F  + S V   L R R++D      + +D+++ ++   F  HK  +++ S  
Sbjct: 4   GSADSCIQFTRHASDVLLNLNRLRSRD------ILTDVVIVVSREQFRAHKTVLMACSGL 57

Query: 91  LNRIVFKRRS------NGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAAL 144
              I   +        N + E NP           E F +++ F Y  ++++   NI A+
Sbjct: 58  FYSIFTDQLKCNLSVINLDPEINP-----------EGFCILLDFMYTSRLNLREGNIMAV 106

Query: 145 YSAANFLEMSDDLD 158
            + A +L+M   +D
Sbjct: 107 MATAMYLQMEHVVD 120


>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
          Length = 817

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 446 LYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQV 505
           L  +++ Y+K HP+ TEEE      ++      +E  +  +K + +P   +   +L E+ 
Sbjct: 727 LASSIECYMKDHPECTEEEALDHIYSI-LEPAVKELTREFLKPDDVPFACKK--MLFEET 783

Query: 506 NITKVMTAGGSNFCRTK 522
            +T V+   G  F  +K
Sbjct: 784 RVTMVIFKDGDGFGVSK 800


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,065,804
Number of Sequences: 62578
Number of extensions: 555084
Number of successful extensions: 1293
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 3
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)