Query 008150
Match_columns 576
No_of_seqs 319 out of 968
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 20:06:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1E-84 2.2E-89 657.2 20.2 239 244-482 1-258 (258)
2 KOG4441 Proteins containing BT 100.0 4.1E-28 8.8E-33 271.4 19.1 235 58-359 29-264 (571)
3 PHA02713 hypothetical protein; 99.9 5.2E-27 1.1E-31 262.2 16.6 228 58-355 18-248 (557)
4 PHA02790 Kelch-like protein; P 99.9 2.3E-25 4.9E-30 244.8 13.5 177 59-286 16-195 (480)
5 PHA03098 kelch-like protein; P 99.9 5.4E-24 1.2E-28 235.6 17.2 224 62-356 6-237 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 2E-16 4.4E-21 138.4 9.8 105 59-173 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.5 1.1E-14 2.4E-19 120.2 7.8 90 67-167 1-90 (90)
8 KOG4350 Uncharacterized conser 99.3 7.4E-12 1.6E-16 131.5 10.8 214 58-342 37-254 (620)
9 KOG2075 Topoisomerase TOP1-int 99.2 1.6E-10 3.4E-15 124.2 12.6 187 56-288 105-297 (521)
10 KOG4591 Uncharacterized conser 98.8 2E-08 4.4E-13 97.7 8.7 118 59-200 60-183 (280)
11 KOG4682 Uncharacterized conser 98.5 2.4E-07 5.2E-12 98.2 9.2 124 59-200 63-187 (488)
12 KOG0783 Uncharacterized conser 98.3 8.2E-07 1.8E-11 100.6 6.3 125 65-211 712-846 (1267)
13 KOG0783 Uncharacterized conser 98.2 1.7E-06 3.7E-11 98.1 6.5 69 63-133 556-633 (1267)
14 PF11822 DUF3342: Domain of un 97.6 5.7E-05 1.2E-09 79.1 4.5 94 68-174 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.5 0.0043 9.4E-08 54.8 5.1 81 68-153 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.3 0.0031 6.8E-08 54.3 3.2 84 68-155 1-88 (94)
17 KOG2716 Polymerase delta-inter 95.6 0.057 1.2E-06 54.7 8.9 97 68-174 7-105 (230)
18 PF07707 BACK: BTB And C-termi 95.2 0.0045 9.7E-08 53.4 -0.3 68 248-334 34-101 (103)
19 KOG3473 RNA polymerase II tran 94.6 0.089 1.9E-06 46.4 6.0 75 73-152 25-111 (112)
20 smart00875 BACK BTB And C-term 94.1 0.14 3E-06 43.4 6.1 65 249-333 35-99 (101)
21 KOG2838 Uncharacterized conser 94.1 0.041 9E-07 56.7 3.2 82 62-146 127-211 (401)
22 PF03931 Skp1_POZ: Skp1 family 93.2 0.36 7.9E-06 38.8 6.8 55 68-130 3-58 (62)
23 KOG1724 SCF ubiquitin ligase, 90.3 0.59 1.3E-05 45.2 5.7 91 72-174 12-127 (162)
24 KOG0511 Ankyrin repeat protein 89.5 0.44 9.6E-06 51.3 4.6 79 75-156 301-380 (516)
25 KOG2838 Uncharacterized conser 87.4 0.82 1.8E-05 47.5 4.8 62 76-138 262-330 (401)
26 KOG3840 Uncharaterized conserv 79.8 18 0.0004 38.4 10.8 92 60-156 90-187 (438)
27 PF04508 Pox_A_type_inc: Viral 69.9 6 0.00013 26.1 2.8 18 550-567 2-19 (23)
28 PF01466 Skp1: Skp1 family, di 66.3 4.2 9E-05 34.2 2.1 33 136-174 11-43 (78)
29 PF01166 TSC22: TSC-22/dip/bun 59.0 16 0.00034 29.6 3.9 34 539-572 11-44 (59)
30 KOG0511 Ankyrin repeat protein 58.8 2.5 5.5E-05 45.8 -0.7 89 56-153 138-231 (516)
31 KOG2714 SETA binding protein S 58.6 25 0.00053 39.0 6.6 84 68-155 13-99 (465)
32 PF14077 WD40_alt: Alternative 54.2 7.6 0.00017 29.8 1.4 22 551-572 13-34 (48)
33 PF14363 AAA_assoc: Domain ass 53.6 8 0.00017 34.0 1.7 41 435-476 30-70 (98)
34 COG5201 SKP1 SCF ubiquitin lig 53.5 42 0.0009 31.6 6.3 90 71-174 8-122 (158)
35 PHA01750 hypothetical protein 52.7 35 0.00075 28.3 5.0 34 541-574 41-74 (75)
36 TIGR02894 DNA_bind_RsfA transc 48.1 38 0.00082 32.8 5.4 34 541-574 117-150 (161)
37 KOG2715 Uncharacterized conser 47.4 75 0.0016 31.2 7.2 99 66-172 21-120 (210)
38 PF13815 Dzip-like_N: Iguana/D 47.3 66 0.0014 29.2 6.7 55 493-573 64-118 (118)
39 KOG4571 Activating transcripti 47.0 27 0.00058 36.8 4.5 38 537-574 250-287 (294)
40 PF07407 Seadorna_VP6: Seadorn 45.6 30 0.00066 37.0 4.6 30 537-566 34-63 (420)
41 PF08581 Tup_N: Tup N-terminal 43.1 39 0.00085 28.9 4.2 25 549-573 39-63 (79)
42 PF09789 DUF2353: Uncharacteri 42.2 38 0.00082 36.3 4.8 38 539-576 76-113 (319)
43 KOG1665 AFH1-interacting prote 42.0 1.3E+02 0.0028 31.0 8.2 91 68-168 11-105 (302)
44 TIGR01834 PHA_synth_III_E poly 41.9 31 0.00067 36.9 4.2 27 548-574 288-314 (320)
45 PF07989 Microtub_assoc: Micro 41.8 58 0.0013 27.5 5.0 35 539-573 40-74 (75)
46 PRK13922 rod shape-determining 41.0 43 0.00094 34.5 5.1 36 537-572 71-109 (276)
47 PF10473 CENP-F_leu_zip: Leuci 40.4 54 0.0012 31.1 5.0 37 537-573 75-111 (140)
48 TIGR00219 mreC rod shape-deter 37.5 56 0.0012 34.3 5.2 34 539-572 70-107 (283)
49 smart00338 BRLZ basic region l 37.2 87 0.0019 25.1 5.2 34 540-573 31-64 (65)
50 PF11365 DUF3166: Protein of u 36.2 72 0.0016 28.4 4.9 38 539-576 5-42 (96)
51 PF04977 DivIC: Septum formati 35.7 96 0.0021 25.3 5.4 28 541-568 23-50 (80)
52 COG2433 Uncharacterized conser 35.1 63 0.0014 37.4 5.4 153 402-573 303-467 (652)
53 KOG1987 Speckle-type POZ prote 33.3 39 0.00084 34.8 3.3 90 74-174 109-201 (297)
54 PF10929 DUF2811: Protein of u 32.4 33 0.00071 27.7 1.9 19 444-462 8-26 (57)
55 PF00170 bZIP_1: bZIP transcri 32.3 1.3E+02 0.0028 24.1 5.5 31 541-571 32-62 (64)
56 TIGR02894 DNA_bind_RsfA transc 31.6 88 0.0019 30.4 5.0 34 540-573 102-135 (161)
57 PF15294 Leu_zip: Leucine zipp 29.8 90 0.002 32.9 5.2 33 539-571 129-161 (278)
58 PF08826 DMPK_coil: DMPK coile 29.6 1.2E+02 0.0027 24.7 4.9 34 542-575 25-58 (61)
59 PLN03205 ATR interacting prote 29.3 60 0.0013 36.0 3.8 30 542-571 134-163 (652)
60 COG3510 CmcI Cephalosporin hyd 29.2 40 0.00088 33.9 2.4 35 432-466 183-219 (237)
61 PF10186 Atg14: UV radiation r 26.8 97 0.0021 31.6 4.9 33 480-512 12-44 (302)
62 PRK10884 SH3 domain-containing 26.3 1.3E+02 0.0027 30.3 5.4 33 540-572 137-169 (206)
63 PF09006 Surfac_D-trimer: Lung 26.2 1.9E+02 0.004 22.5 4.9 27 545-571 2-28 (46)
64 PRK00888 ftsB cell division pr 24.9 1.5E+02 0.0033 26.5 5.1 32 539-570 31-62 (105)
65 cd00632 Prefoldin_beta Prefold 24.7 1.7E+02 0.0037 25.8 5.4 36 540-575 68-103 (105)
66 PF08172 CASP_C: CASP C termin 24.0 67 0.0014 33.2 3.0 29 542-570 93-121 (248)
67 PF05377 FlaC_arch: Flagella a 23.8 1.1E+02 0.0023 24.6 3.4 23 539-561 18-40 (55)
68 PRK15322 invasion protein OrgB 23.1 2E+02 0.0044 29.0 6.0 80 379-458 90-204 (210)
69 PF10224 DUF2205: Predicted co 23.0 2E+02 0.0043 24.8 5.2 33 539-571 20-52 (80)
70 KOG3713 Voltage-gated K+ chann 22.9 2.5E+02 0.0053 31.9 7.2 97 63-168 28-134 (477)
71 PF11123 DNA_Packaging_2: DNA 22.7 57 0.0012 27.8 1.8 16 444-459 31-46 (82)
72 KOG3335 Predicted coiled-coil 22.6 1.8E+02 0.0038 28.8 5.3 34 541-574 105-138 (181)
73 PRK14127 cell division protein 22.6 1.2E+02 0.0026 27.5 4.0 30 537-566 39-68 (109)
74 PF07439 DUF1515: Protein of u 22.6 2E+02 0.0043 26.3 5.2 22 552-573 43-64 (112)
75 PF06305 DUF1049: Protein of u 22.6 1.1E+02 0.0024 24.4 3.5 11 542-552 48-58 (68)
76 COG1422 Predicted membrane pro 22.1 2.6E+02 0.0055 28.2 6.5 19 551-569 103-121 (201)
77 PF00808 CBFD_NFYB_HMF: Histon 22.0 1.6E+02 0.0035 23.4 4.3 49 422-490 2-53 (65)
78 COG4026 Uncharacterized protei 21.8 1.8E+02 0.0039 29.8 5.4 35 540-574 154-188 (290)
79 PF09755 DUF2046: Uncharacteri 21.8 1.3E+02 0.0028 32.2 4.6 37 535-571 27-63 (310)
80 PF08700 Vps51: Vps51/Vps67; 21.0 1.6E+02 0.0034 24.6 4.3 33 538-570 54-86 (87)
81 PF06156 DUF972: Protein of un 20.6 1.2E+02 0.0025 27.5 3.5 27 537-563 31-57 (107)
82 smart00340 HALZ homeobox assoc 20.6 99 0.0021 23.6 2.4 18 539-556 16-33 (44)
83 PF06005 DUF904: Protein of un 20.4 2.8E+02 0.006 23.3 5.4 36 540-575 23-58 (72)
84 PF09006 Surfac_D-trimer: Lung 20.3 1.8E+02 0.0039 22.6 3.8 24 551-574 1-24 (46)
85 PRK10803 tol-pal system protei 20.2 1.6E+02 0.0036 30.4 5.0 32 540-571 59-90 (263)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1e-84 Score=657.22 Aligned_cols=239 Identities=41% Similarity=0.710 Sum_probs=215.8
Q ss_pred CcceecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhhhcccccC---CCC-CCcchhhhHHHHHHHHHHHHhc
Q 008150 244 DSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSG---LNN-VTPKQLTHQLRRVTTESLIRIL 319 (576)
Q Consensus 244 ~dWW~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~L~~~~~g---~~~-~~~~~~r~~~~r~LLE~IV~LL 319 (576)
+||||||++.|++++|+|||.+|+++|+++++|+++|++||++|+|..... ... ..........+|.+||+||+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL 80 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL 80 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999943110 010 1111224567899999999999
Q ss_pred CCCCCccchHHHHHHHHhhhhccCCHHHHHHHHHHHHhhhcccccccceeec-CCCCCcccchhHHHHHHHHHHhchh--
Q 008150 320 PEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRN-YGENDTVYHVGIVVRVVECYVSFVL-- 396 (576)
Q Consensus 320 P~~~~~vsc~FLf~LLR~a~~l~aS~~Cr~~LE~rIg~qLd~AtldDLLIps-~~~~~~lyDvd~V~riv~~Fl~~~~-- 396 (576)
|.+++++||+|||+|||+|+++++|..||.+||+|||.|||||||||||||+ ++..+|+||||+|+|||++|+....
T Consensus 81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~ 160 (258)
T PF03000_consen 81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEA 160 (258)
T ss_pred CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999 3344699999999999999998621
Q ss_pred ------------cCCCchhhHHHHhhhhhhhhhcCCCCCChhHHHHHHHHcCCCccccchhhHHHHHHHHHhCCCCCHHH
Q 008150 397 ------------RNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEE 464 (576)
Q Consensus 397 ------------~~~~~~l~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLk~Hp~ls~~E 464 (576)
..+.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~E 240 (258)
T PF03000_consen 161 GEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEEE 240 (258)
T ss_pred ccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHHH
Confidence 12345799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCHHHH
Q 008150 465 RTSVSRAMEFHKLSQEAR 482 (576)
Q Consensus 465 r~~lC~~ldc~KLS~Eac 482 (576)
|++||++|||||||+|||
T Consensus 241 r~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 241 RKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHHHHhhCCcccCCcccC
Confidence 999999999999999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=4.1e-28 Score=271.43 Aligned_cols=235 Identities=17% Similarity=0.271 Sum_probs=194.0
Q ss_pred HHhhcCCceeEEEEECCeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEee
Q 008150 58 WIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDV 136 (576)
Q Consensus 58 w~~~~~~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~i 136 (576)
-+|.++.+|||+|.|++++|++||.||||+|+|||+||++. +|+. ..+|+|++++ +++++++++|+||++++|
T Consensus 29 ~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~----~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i 102 (571)
T KOG4441|consen 29 ELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESK----QKEINLEGVD--PETLELLLDYAYTGKLEI 102 (571)
T ss_pred HHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCccccc----ceEEEEecCC--HHHHHHHHHHhhcceEEe
Confidence 38999999999999999999999999999999999999986 5554 3589999987 789999999999999999
Q ss_pred ccccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhchhhhhhHHHHHHhccCC
Q 008150 137 TATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINK 216 (576)
Q Consensus 137 t~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcidsLa~kA~~~~ 216 (576)
+.+||+.|+.||.+|||++ |+..|+.||.+++.++ ||.++..+|+.+++ ..|..+|-.
T Consensus 103 ~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~---------Nclgi~~~a~~~~~-----~~L~~~a~~-- 160 (571)
T KOG4441|consen 103 SEDNVQELLEAASLLQIPE------VVDACCEFLESQLDPS---------NCLGIRRFAELHSC-----TELLEVADE-- 160 (571)
T ss_pred chHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHH---------HHHHHHHHHHhcCc-----HHHHHHHHH--
Confidence 9999999999999999997 8999999999999655 55555555555554 233332211
Q ss_pred CCccccCCCCcccccccccccccccCCCcceecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhhhcccccCCC
Q 008150 217 KGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLN 296 (576)
Q Consensus 217 ~~f~~~~~~~~~~l~~~~~~~~~~~~~~dWW~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~L~~~~~g~~ 296 (576)
|. .++|...+-.||+..||.+.+..+|.......-+|+.|+++++.|++++.+
T Consensus 161 --~i------------------~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~------- 213 (571)
T KOG4441|consen 161 --YI------------------LQHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFE------- 213 (571)
T ss_pred --HH------------------HHHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHh-------
Confidence 11 012233455789999999998888888887778999999999999998775
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhhhhccCCHHHHHHHHHHHHhhh
Q 008150 297 NVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFML 359 (576)
Q Consensus 297 ~~~~~~~r~~~~r~LLE~IV~LLP~~~~~vsc~FLf~LLR~a~~l~aS~~Cr~~LE~rIg~qL 359 (576)
. |..+..+++++ |++ +.++..||.+.+....++..++.|+..|......+|
T Consensus 214 -----~-R~~~~~~ll~~-vr~-----~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~ 264 (571)
T KOG4441|consen 214 -----E-REEHLPALLEA-VRL-----PLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHL 264 (571)
T ss_pred -----h-HHHHHHHHHHh-cCc-----cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhh
Confidence 1 55667888888 465 589999999999999999999999999999884444
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=5.2e-27 Score=262.18 Aligned_cols=228 Identities=13% Similarity=0.160 Sum_probs=176.7
Q ss_pred HHhhcCCceeEEEEEC-CeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEe
Q 008150 58 WIVRAKVASDLIVQIA-DSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVD 135 (576)
Q Consensus 58 w~~~~~~~~DV~v~V~-~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~ 135 (576)
-+|.++.+|||+|.|+ |++|++||.+|||+|+|||+||+++ +|+.. ..+|+|++++ +++|+.+++|+||++
T Consensus 18 ~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~---~~~v~l~~v~--~~~~~~ll~y~Yt~~-- 90 (557)
T PHA02713 18 NLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDL---VTRVNLQMFD--KDAVKNIVQYLYNRH-- 90 (557)
T ss_pred HHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhcc---CceEEeccCC--HHHHHHHHHHhcCCC--
Confidence 3788999999999998 8999999999999999999999987 44321 2489999998 889999999999997
Q ss_pred eccccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhchhhhhhHHHHHHhccC
Q 008150 136 VTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASIN 215 (576)
Q Consensus 136 it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcidsLa~kA~~~ 215 (576)
||.+||+.|+.||++|||++ |+..|++||.+.+. ..||.++...|+.+++.. ..+....-++.+
T Consensus 91 i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~---------~~NCl~i~~~~~~~~~~~-L~~~a~~~i~~~ 154 (557)
T PHA02713 91 ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTN---------HDTCIYMYHRLYEMSHIP-IVKYIKRMLMSN 154 (557)
T ss_pred CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCC---------ccchHHHHHHHHhccchH-HHHHHHHHHHHH
Confidence 78999999999999999997 99999999999994 567888777777665421 111111112222
Q ss_pred CCCccccCCCCcccccccccccccccCCCcceecccccCChhHHHHHHHHhhh-cCCChhHHHHHHHHHHhhhhcccccC
Q 008150 216 KKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKR-KGITSELVGSCIAKWTSKWLSQITSG 294 (576)
Q Consensus 216 ~~~f~~~~~~~~~~l~~~~~~~~~~~~~~dWW~EDl~~L~~d~f~rvI~am~~-~gl~~e~I~~aL~~Yakk~L~~~~~g 294 (576)
.. ...-.|||..|+.+.+..+|+.... ...+|+.|++++++|++++..
T Consensus 155 f~--------------------------~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~----- 203 (557)
T PHA02713 155 IP--------------------------TLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYI----- 203 (557)
T ss_pred HH--------------------------HHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHH-----
Confidence 11 1111588999999998888877653 445789999999999998754
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhhhhccCCHHHHHHHHHHH
Q 008150 295 LNNVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRI 355 (576)
Q Consensus 295 ~~~~~~~~~r~~~~r~LLE~IV~LLP~~~~~vsc~FLf~LLR~a~~l~aS~~Cr~~LE~rI 355 (576)
. |. ....|++.| ++ +.++.++++ .+.....+..++.|+..|++..
T Consensus 204 -------~-r~-~~~~ll~~V-R~-----~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~ 248 (557)
T PHA02713 204 -------T-EE-QLLCILSCI-DI-----QNLDKKSRL-LLYSNKTINMYPSCIQFLLDNK 248 (557)
T ss_pred -------H-HH-HHhhhHhhh-hH-----hhcchhhhh-hhcchHHHHhhHHHHHHHhhhh
Confidence 1 22 245788884 65 457778887 5667788899999999987754
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=2.3e-25 Score=244.82 Aligned_cols=177 Identities=14% Similarity=0.157 Sum_probs=139.8
Q ss_pred HhhcCCceeEEEEECCeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEe--cCCCCcHHHHHHHHHHHcCceEe
Q 008150 59 IVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFI--SNFPGGIEIFELVVKFCYGWKVD 135 (576)
Q Consensus 59 ~~~~~~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L--~~~pgGae~felv~~FcY~~~i~ 135 (576)
++.++.+|||+. |.|.+|++||.||||+|+|||+||+++ +|+. .+|.+ .+++ +++|+.+++|+|||+|.
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-----~~v~~~~~~v~--~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 16 LSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-----DPVTRVCLDLD--IHSLTSIVIYSYTGKVY 87 (480)
T ss_pred HHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccc-----cceEEEecCcC--HHHHHHHHHhheeeeEE
Confidence 667899999877 556699999999999999999999987 5553 24555 3776 88999999999999999
Q ss_pred eccccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhchhhhhhHHHHHHhccC
Q 008150 136 VTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASIN 215 (576)
Q Consensus 136 it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcidsLa~kA~~~ 215 (576)
||.+||+.|+.||.+|||++ |++.|++||.+.+ ...||.++..+|+.+++ +.|..+|-.
T Consensus 88 it~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l---------~~~NCl~i~~~A~~y~~-----~~L~~~a~~- 146 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEF------IIYTCINFILRDF---------RKEYCVECYMMGIEYGL-----SNLLCHTKD- 146 (480)
T ss_pred EecccHHHHHHHHHHhChHH------HHHHHHHHHHhhC---------CcchHHHHHHHHHHhCH-----HHHHHHHHH-
Confidence 99999999999999999997 8999999999999 45688888888888887 666666532
Q ss_pred CCCccccCCCCcccccccccccccccCCCcceecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 008150 216 KKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSK 286 (576)
Q Consensus 216 ~~~f~~~~~~~~~~l~~~~~~~~~~~~~~dWW~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk 286 (576)
|. + .++.. +.. .-+|||..|++ ..+|+......-+|+.|++++++|+++
T Consensus 147 ---fi---------~-~nF~~-----v~~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 147 ---FI---------A-KHFLE-----LED-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred ---HH---------H-HhHHH-----Hhc-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 21 0 01110 001 01478888986 456666666666899999999999985
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=235.58 Aligned_cols=224 Identities=20% Similarity=0.218 Sum_probs=176.6
Q ss_pred cCCceeEEEEE--CCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEeeccc
Q 008150 62 AKVASDLIVQI--ADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTAT 139 (576)
Q Consensus 62 ~~~~~DV~v~V--~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~it~~ 139 (576)
++.+|||+|.| +|++|++||.+|+++|+||++||+++.. + .+|+|++ + +++|+.+++|+|||++.|+.+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~----~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~ 76 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--E----NEINLNI-D--YDSFNEVIKYIYTGKINITSN 76 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--C----ceEEecC-C--HHHHHHHHHHhcCCceEEcHH
Confidence 78999999998 9999999999999999999999987643 1 3799988 5 789999999999999999999
Q ss_pred cHHHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhchhhhhhHHHHHHhccCCCCc
Q 008150 140 NIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGF 219 (576)
Q Consensus 140 NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcidsLa~kA~~~~~~f 219 (576)
||..|+.||++|||++ |+..|++||.+.+ ...||..++.+|+.+++ +.|...|-. |
T Consensus 77 ~~~~ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~~----~ 132 (534)
T PHA03098 77 NVKDILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAYN----Y 132 (534)
T ss_pred HHHHHHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHHH----H
Confidence 9999999999999996 9999999999988 46788999999988876 333332211 1
Q ss_pred cccCCCCcccccccccccccccCCCcceecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhhhcccccCCCCCC
Q 008150 220 TFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVT 299 (576)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~~~dWW~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~L~~~~~g~~~~~ 299 (576)
. .+| +. .+.. .+||..|+.+.++.+|+.-...--+|+.|+++++.|+++...
T Consensus 133 i---------~~n-f~-----~v~~---~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~---------- 184 (534)
T PHA03098 133 I---------RNN-IE-----LIYN---DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKN---------- 184 (534)
T ss_pred H---------HHH-HH-----HHhc---CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChh----------
Confidence 0 000 00 0111 578999999998888777666666899999999999987653
Q ss_pred cchhhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHH------hhhhccCCHHHHHHHHHHHH
Q 008150 300 PKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLK------LGLMMKINAELLKKLERRIA 356 (576)
Q Consensus 300 ~~~~r~~~~r~LLE~IV~LLP~~~~~vsc~FLf~LLR------~a~~l~aS~~Cr~~LE~rIg 356 (576)
. |..+...|++.| ++ +.++..+|..+.+ ...++ .+..|+..+.....
T Consensus 185 --~-r~~~~~~ll~~v-R~-----~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (534)
T PHA03098 185 --N-KYKDICLILKVL-RI-----TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKY 237 (534)
T ss_pred --h-hHhHHHHHHhhc-cc-----cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHh
Confidence 1 444567889884 65 6889999999876 44445 77889988776553
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.67 E-value=2e-16 Score=138.43 Aligned_cols=105 Identities=21% Similarity=0.390 Sum_probs=89.6
Q ss_pred HhhcCCceeEEEEEC-CeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEeec
Q 008150 59 IVRAKVASDLIVQIA-DSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVT 137 (576)
Q Consensus 59 ~~~~~~~~DV~v~V~-~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~it 137 (576)
+..++..||++|.|+ +.+|++||.+|+++|+||++||.+...... ...+|.+++++ +++|+.+++|+|++.+.++
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~--~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKES--TVPEISLPDVS--PEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTS--SEEEEEETTSC--HHHHHHHHHHHHHSEEEEE
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccc--ccccccccccc--ccccccccccccCCcccCC
Confidence 566789999999999 899999999999999999999987621111 12368889998 8899999999999999999
Q ss_pred -cccHHHHHHHHhhcccccccCcChHHHHHHHHHHHh
Q 008150 138 -ATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFS 173 (576)
Q Consensus 138 -~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~ 173 (576)
.+|+..++..|++|+|++ |...|+.||.+.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999999996 999999999874
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.55 E-value=1.1e-14 Score=120.21 Aligned_cols=90 Identities=21% Similarity=0.412 Sum_probs=78.8
Q ss_pred eEEEEECCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEeeccccHHHHHH
Q 008150 67 DLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYS 146 (576)
Q Consensus 67 DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~it~~NV~~L~c 146 (576)
||++.|+|..|++||.+|+++|+||++||.+..... ....+.+.+++ +++|+.+++|+||+++.++..|+..++.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~---~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~ 75 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKES---KKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLE 75 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccC---CCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHH
Confidence 789999999999999999999999999998753211 13578898877 8899999999999999999999999999
Q ss_pred HHhhcccccccCcChHHHHHH
Q 008150 147 AANFLEMSDDLDQGNLITKTE 167 (576)
Q Consensus 147 AA~~LqMte~~~~~NL~~~ce 167 (576)
+|++++|++ |+..|+
T Consensus 76 ~a~~~~~~~------l~~~c~ 90 (90)
T smart00225 76 LADYLQIPG------LVELCE 90 (90)
T ss_pred HHHHHCcHH------HHhhhC
Confidence 999999986 676663
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.31 E-value=7.4e-12 Score=131.54 Aligned_cols=214 Identities=14% Similarity=0.189 Sum_probs=138.5
Q ss_pred HHhhcCCceeEEEEECCeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEee
Q 008150 58 WIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDV 136 (576)
Q Consensus 58 w~~~~~~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~i 136 (576)
.++.....+||++.|++++|++||.+||++|.|||+|+-.+ .|+.+ ..|.|++-. +++|..+++|+|+|++.+
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q----~~ipLq~t~--~eAF~~lLrYiYtg~~~l 110 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQ----QLIPLQETN--SEAFRALLRYIYTGKIDL 110 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhh----ccccccccc--HHHHHHHHHHHhhcceec
Confidence 47888999999999999999999999999999999999876 56653 467777643 899999999999999998
Q ss_pred ccccH---HHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhchhhhhhHHHHHHhc
Q 008150 137 TATNI---AALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKAS 213 (576)
Q Consensus 137 t~~NV---~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcidsLa~kA~ 213 (576)
+...- ...+.-|...++. -|-....+||.+.+. +.|--.++..|.-+.+ ..|...+|
T Consensus 111 ~~~~ed~lld~LslAh~Ygf~------~Le~aiSeYl~~iL~---------~~NvCmifdaA~ly~l-----~~Lt~~C~ 170 (620)
T KOG4350|consen 111 AGVEEDILLDYLSLAHRYGFI------QLETAISEYLKEILK---------NENVCMIFDAAYLYQL-----TDLTDYCM 170 (620)
T ss_pred ccchHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHc---------ccceeeeeeHHHHhcc-----hHHHHHHH
Confidence 76443 3344445555554 488899999999773 3333333444444443 33333332
Q ss_pred cCCCCccccCCCCcccccccccccccccCCCcceecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhhhccccc
Q 008150 214 INKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITS 293 (576)
Q Consensus 214 ~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~dWW~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~L~~~~~ 293 (576)
. |. +.+. .+-.-.+-|..|+-+..+.++.-.. --..|..|+-|+..|.+..-.
T Consensus 171 m----fm----------DrnA--------~~lL~~~sFn~LSk~sL~e~l~RDs-FfApE~~IFlAv~~W~~~Nsk---- 223 (620)
T KOG4350|consen 171 M----FM----------DRNA--------DQLLEDPSFNRLSKDSLKELLARDS-FFAPELKIFLAVRSWHQNNSK---- 223 (620)
T ss_pred H----HH----------hcCH--------HhhhcCcchhhhhHHHHHHHHhhhc-ccchHHHHHHHHHHHHhcCch----
Confidence 2 11 0000 0000123355677777666553211 112556799999999764321
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhhhhcc
Q 008150 294 GLNNVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMK 342 (576)
Q Consensus 294 g~~~~~~~~~r~~~~r~LLE~IV~LLP~~~~~vsc~FLf~LLR~a~~l~ 342 (576)
...+.++|. |+| +.++-.-|+...|-.-++.
T Consensus 224 ------------e~~k~~~~~-VRL-----PLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 224 ------------EASKVLLEL-VRL-----PLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred ------------hhHHHHHHH-Hhh-----hhccHHHHHhccCcccCcC
Confidence 234677776 575 4666667776666555543
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.18 E-value=1.6e-10 Score=124.16 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=142.6
Q ss_pred hHHHhhcCCceeEEEEECC-----eEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHH
Q 008150 56 KDWIVRAKVASDLIVQIAD-----SCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFC 129 (576)
Q Consensus 56 ~~w~~~~~~~~DV~v~V~~-----~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~Fc 129 (576)
+.-+..+...+|+.+.|++ ++||+||++|+..|.-|.+||.++ .++. ..+|+++|+. +.+|...++|+
T Consensus 105 ~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~----s~ei~lpdve--paaFl~~L~fl 178 (521)
T KOG2075|consen 105 QAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDA----SLEIRLPDVE--PAAFLAFLRFL 178 (521)
T ss_pred hHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCccccc----CceeecCCcC--hhHhHHHHHHH
Confidence 4446778999999999983 799999999999999999999876 3331 3589999998 78999999999
Q ss_pred cCceEeeccccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhchhhhhhHHHH
Q 008150 130 YGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIA 209 (576)
Q Consensus 130 Y~~~i~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcidsLa 209 (576)
|+-.+.+.++||..++.||.-.-.+. |...|.+||+..+.+- ..+.-|-+|- ...++-.++++|++.|.
T Consensus 179 Ysdev~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~~--naf~~L~q~A---~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 179 YSDEVKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMAD--NAFLELFQRA---KLFDEPSLISICLEVID 247 (521)
T ss_pred hcchhhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCCh--HHHHHHHHHH---HhhcCHHHHHHHHHHhh
Confidence 99999999999999999998777774 9999999999988653 4555555553 34556678899999986
Q ss_pred HHhccCCCCccccCCCCcccccccccccccccCCCcceecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhhh
Q 008150 210 LKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWL 288 (576)
Q Consensus 210 ~kA~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~dWW~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~L 288 (576)
...-. .+ ..-||-|+-.+ .++|..|+..-. ..+++-.+++++.+|+.---
T Consensus 248 ~~~~~--------------al-------------~~EGf~did~~-~dt~~evl~r~~-l~~~e~~lfeA~lkw~~~e~ 297 (521)
T KOG2075|consen 248 KSFED--------------AL-------------TPEGFCDIDST-RDTYEEVLRRDT-LEAREFRLFEAALKWAEAEC 297 (521)
T ss_pred hHHHh--------------hh-------------CccceeehhhH-HHHHHHHHhhcc-cchhHHHHHHHHHhhccCcc
Confidence 53311 01 11245555555 788666664432 23467789999999987433
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.78 E-value=2e-08 Score=97.73 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=97.4
Q ss_pred HhhcCCceeEEEEEC---CeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceE
Q 008150 59 IVRAKVASDLIVQIA---DSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKV 134 (576)
Q Consensus 59 ~~~~~~~~DV~v~V~---~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i 134 (576)
+.....++|+++.++ ++.+++||+|||++|++.+ |.++ .|.. .+..+.|.. +|+|..+++++||-.|
T Consensus 60 L~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-----e~~~~dDad--~Ea~~t~iRWIYTDEi 130 (280)
T KOG4591|consen 60 LLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-----EELDLDDAD--FEAFHTAIRWIYTDEI 130 (280)
T ss_pred HhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-----hhhcccccC--HHHHHHhheeeecccc
Confidence 667889999999998 5789999999999999876 4443 2222 356677776 8999999999999999
Q ss_pred eeccccH--HHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhch
Q 008150 135 DVTATNI--AALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHI 200 (576)
Q Consensus 135 ~it~~NV--~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~i 200 (576)
++..+.+ ..|+..|.-+|..- |.++|+.=+...+ ...||..+..+||++..
T Consensus 131 dfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n~ 183 (280)
T KOG4591|consen 131 DFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELNA 183 (280)
T ss_pred ccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhhH
Confidence 9887765 56778899999875 8899999887777 67899999999999864
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.54 E-value=2.4e-07 Score=98.19 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=101.1
Q ss_pred HhhcCCceeEEEEECCeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEeec
Q 008150 59 IVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVT 137 (576)
Q Consensus 59 ~~~~~~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~it 137 (576)
+..+|.-+||+|.+=|...++||.-| ..|+||..||.+. +|+... --.++|+|=.-+..+|..++.=.|...|+|.
T Consensus 63 lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~--iIqleI~Dp~Id~~al~~a~gsLY~dEveI~ 139 (488)
T KOG4682|consen 63 LFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMN--IIQLEIPDPNIDVVALQVAFGSLYRDEVEIK 139 (488)
T ss_pred HHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCc--eEEEEcCCCcccHHHHHHHHhhhhhhheecc
Confidence 55689999999999999999999876 7899999999875 554421 2234555544458999999999999999999
Q ss_pred cccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhch
Q 008150 138 ATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHI 200 (576)
Q Consensus 138 ~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~i 200 (576)
.+-|..++.||.+||.+. |+++|.+-+.+.+.+. +-.+....+..||+
T Consensus 140 l~dv~gvlAaA~~lqldg------l~qrC~evMie~lspk---------ta~~yYea~ckYgl 187 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLDG------LIQRCGEVMIETLSPK---------TACGYYEAACKYGL 187 (488)
T ss_pred HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhcChh---------hhhHhhhhhhhhhh
Confidence 999999999999999995 9999999999999554 44455566666665
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.30 E-value=8.2e-07 Score=100.62 Aligned_cols=125 Identities=19% Similarity=0.277 Sum_probs=97.8
Q ss_pred ceeEEEEECCeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcC-ceEee-----c
Q 008150 65 ASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYG-WKVDV-----T 137 (576)
Q Consensus 65 ~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~-~~i~i-----t 137 (576)
.|||+.. +|+.|++||.+|++++.||..||... .|+. .+...+.|-.+|.++.+++|.|. -+.++ .
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~s------S~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~ 784 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESS------SITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKE 784 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhc------cceeecCcchHHHHHHHHHHHHccchHHHHhccch
Confidence 3455544 78999999999999999999999864 4442 46666777779999999999994 44433 2
Q ss_pred cccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhc---hhhhhhHHHHHH
Q 008150 138 ATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELH---ILKRCSEAIALK 211 (576)
Q Consensus 138 ~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~---iv~rcidsLa~k 211 (576)
.+=+..++..|+.|=+++ |.+.||.-|.+.+ .|++|..|+.+|..|+ +-.+|+|-|-..
T Consensus 785 ~dF~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N 846 (1267)
T KOG0783|consen 785 SDFMFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHN 846 (1267)
T ss_pred hhhhHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 233567778888888887 8999999999888 7899999999998775 566888877543
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.22 E-value=1.7e-06 Score=98.14 Aligned_cols=69 Identities=19% Similarity=0.487 Sum_probs=56.1
Q ss_pred CCceeEEEEECCeEeeeccchhcccCHHHHHhhcccccCC---------CCCCCCeEEecCCCCcHHHHHHHHHHHcCce
Q 008150 63 KVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNG---------EKENNPMIFISNFPGGIEIFELVVKFCYGWK 133 (576)
Q Consensus 63 ~~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~---------~~~~~~~v~L~~~pgGae~felv~~FcY~~~ 133 (576)
+-..|||++||+.-||+||++|+++|++||+||.....+. .....++|.+.++| |.+||+++.|+||..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 4567999999999999999999999999999997542110 01134677789999 679999999999975
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.59 E-value=5.7e-05 Score=79.09 Aligned_cols=94 Identities=18% Similarity=0.355 Sum_probs=75.6
Q ss_pred EEEEECC------eEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEe--c-CCCCcHHHHHHHHHHHcCceEeec
Q 008150 68 LIVQIAD------SCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFI--S-NFPGGIEIFELVVKFCYGWKVDVT 137 (576)
Q Consensus 68 V~v~V~~------~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L--~-~~pgGae~felv~~FcY~~~i~it 137 (576)
|+|+|-| +.|.+.+.+|.+.=+||+..+... .++.. ..+|.| + |+ .+|+-+++|+++....||
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~---~~~idisVhCDv----~iF~WLm~yv~~~~p~l~ 73 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQR---WEEIDISVHCDV----HIFEWLMRYVKGEPPSLT 73 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCc---CCCcceEEecCh----hHHHHHHHHhhcCCCcCC
Confidence 4566632 689999999999999999999541 11111 124444 3 55 499999999999999999
Q ss_pred cccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhh
Q 008150 138 ATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSI 174 (576)
Q Consensus 138 ~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 174 (576)
++||++++-.|+||||++ |++.|-.|....+
T Consensus 74 ~~NvvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 74 PSNVVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred cCcEEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999999997 9999999997766
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.48 E-value=0.0043 Score=54.81 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=60.3
Q ss_pred EEEEE-CCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCce-----------E-
Q 008150 68 LIVQI-ADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWK-----------V- 134 (576)
Q Consensus 68 V~v~V-~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~-----------i- 134 (576)
|+++- +|..|.+.+.+. ..|+-++.|+.+.....+ +...|.|++++ +.+++.+++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~--~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~ 78 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDE--NNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIP 78 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccC--CCCCccCCCcC--HHHHHHHHHHHHHcccCCCCcccccccc
Confidence 45543 689999999865 689999999976421111 12478999998 579999999998421 1
Q ss_pred -------eeccccHHHHHHHHhhccc
Q 008150 135 -------DVTATNIAALYSAANFLEM 153 (576)
Q Consensus 135 -------~it~~NV~~L~cAA~~LqM 153 (576)
.+..+++..|+.||.||++
T Consensus 79 ~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 79 TWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1566789999999999986
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.32 E-value=0.0031 Score=54.31 Aligned_cols=84 Identities=14% Similarity=0.320 Sum_probs=60.4
Q ss_pred EEEEECCeEeeeccchhc-ccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcC-ceEeec-cccHHH
Q 008150 68 LIVQIADSCFHLHKLAMV-SKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYG-WKVDVT-ATNIAA 143 (576)
Q Consensus 68 V~v~V~~~~F~lHK~vLa-s~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~-~~i~it-~~NV~~ 143 (576)
|++.|||+.|.+-+..|. -...+|.+|+... ..... .+...+-| |= .|+.|+.|++|.-+ +.+... ...+..
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~-~~~~~~fi-DR--dp~~F~~IL~ylr~~~~l~~~~~~~~~~ 76 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYD-DDDGEYFI-DR--DPELFEYILNYLRTGGKLPIPDEICLEE 76 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEE-TTTTEEEE-SS---HHHHHHHHHHHHHTSSB---TTS-HHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccC-CccceEEe-cc--ChhhhhHHHHHHhhcCccCCCCchhHHH
Confidence 689999999999999998 5567999999853 10000 01235655 33 48899999999999 777764 678899
Q ss_pred HHHHHhhccccc
Q 008150 144 LYSAANFLEMSD 155 (576)
Q Consensus 144 L~cAA~~LqMte 155 (576)
++..|+|.++.+
T Consensus 77 l~~Ea~fy~l~~ 88 (94)
T PF02214_consen 77 LLEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHHT-HH
T ss_pred HHHHHHHcCCCc
Confidence 999999999986
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.057 Score=54.75 Aligned_cols=97 Identities=14% Similarity=0.290 Sum_probs=75.6
Q ss_pred EEEEECCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEee--ccccHHHHH
Q 008150 68 LIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDV--TATNIAALY 145 (576)
Q Consensus 68 V~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~i--t~~NV~~L~ 145 (576)
|-+.|||..|..+|.-|.-..|||+.|+.....-.. +....|-|.- .|.=|+++++|+=.|.+.| +..++..|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~-d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEK-DESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCcccc-CCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHH
Confidence 457899999999999999999999999976531111 0122455432 3689999999999877766 557788999
Q ss_pred HHHhhcccccccCcChHHHHHHHHHHHhh
Q 008150 146 SAANFLEMSDDLDQGNLITKTEAFLSFSI 174 (576)
Q Consensus 146 cAA~~LqMte~~~~~NL~~~ce~FL~~~v 174 (576)
.=|+|..+++ |++.|+.=+....
T Consensus 83 ~EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 83 REAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHHhhHHH------HHHHHHHHhhhcc
Confidence 9999999996 9999998776653
No 18
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=95.24 E-value=0.0045 Score=53.36 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=47.7
Q ss_pred ecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhhhcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCCCccc
Q 008150 248 FEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTHQLRRVTTESLIRILPEEENAVS 327 (576)
Q Consensus 248 ~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~L~~~~~g~~~~~~~~~r~~~~r~LLE~IV~LLP~~~~~vs 327 (576)
.++|..||.+.+..+++.-.-...+|..|+++++.|+++..+ . |......|++.| ++ +.+|
T Consensus 34 ~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~------------~-r~~~~~~Ll~~i-R~-----~~l~ 94 (103)
T PF07707_consen 34 SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE------------N-REEHLKELLSCI-RF-----PLLS 94 (103)
T ss_dssp SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH------------H-HTTTHHHHHCCC-HH-----HCT-
T ss_pred chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH------------H-HHHHHHHHHHhC-Cc-----ccCC
Confidence 568999999998888886655555788999999999988765 1 333456777774 54 5788
Q ss_pred hHHHHHH
Q 008150 328 CNFLLHL 334 (576)
Q Consensus 328 c~FLf~L 334 (576)
.++|...
T Consensus 95 ~~~L~~~ 101 (103)
T PF07707_consen 95 PEELQNV 101 (103)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8888654
No 19
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=94.62 E-value=0.089 Score=46.45 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=57.9
Q ss_pred CCeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHH-----cCc------eEeecccc
Q 008150 73 ADSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFC-----YGW------KVDVTATN 140 (576)
Q Consensus 73 ~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~Fc-----Y~~------~i~it~~N 140 (576)
+|.+|-+-|. .|.-||-+|+|+.+. ..+.. ...+|.+.+|| +-.++.+..|. |++ +++|-++-
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~--~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippem 99 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEA--EKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEM 99 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCcccccc--ccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHH
Confidence 6789988665 677899999999864 22221 13489999999 77999998865 443 35778899
Q ss_pred HHHHHHHHhhcc
Q 008150 141 IAALYSAANFLE 152 (576)
Q Consensus 141 V~~L~cAA~~Lq 152 (576)
+..|+.||+||+
T Consensus 100 aleLL~aAn~Le 111 (112)
T KOG3473|consen 100 ALELLMAANYLE 111 (112)
T ss_pred HHHHHHHhhhhc
Confidence 999999999997
No 20
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=94.08 E-value=0.14 Score=43.39 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=47.3
Q ss_pred cccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhhhcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCCCccch
Q 008150 249 EDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTHQLRRVTTESLIRILPEEENAVSC 328 (576)
Q Consensus 249 EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~L~~~~~g~~~~~~~~~r~~~~r~LLE~IV~LLP~~~~~vsc 328 (576)
++|..||.+.+..++..-.-....|..++++++.|+++... .+. ....+++.| ++ +.+|.
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~-------------~~~-~~~~ll~~i-r~-----~~~~~ 94 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPE-------------RRR-HLPELLSHV-RF-----PLLSP 94 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHH-------------HHH-HHHHHHHhC-CC-----CCCCH
Confidence 78899999998888877666656788999999999986542 122 445677774 43 56777
Q ss_pred HHHHH
Q 008150 329 NFLLH 333 (576)
Q Consensus 329 ~FLf~ 333 (576)
.+|.+
T Consensus 95 ~~l~~ 99 (101)
T smart00875 95 EYLLE 99 (101)
T ss_pred HHHHh
Confidence 77654
No 21
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.05 E-value=0.041 Score=56.69 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=60.7
Q ss_pred cCCceeEEEEECCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEee---cc
Q 008150 62 AKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDV---TA 138 (576)
Q Consensus 62 ~~~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~i---t~ 138 (576)
...-.||-|......|++||..|+++|++|+-+...+.+.+ .+..+.++.-+|. -++|+..+.+.|+|..-. .-
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~-ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~f 203 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPE-AEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGF 203 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcc-hhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCC
Confidence 44667999999999999999999999999998876553322 2234567777777 569999999999987643 33
Q ss_pred ccHHHHHH
Q 008150 139 TNIAALYS 146 (576)
Q Consensus 139 ~NV~~L~c 146 (576)
.|+..|-.
T Consensus 204 qn~diL~Q 211 (401)
T KOG2838|consen 204 QNSDILEQ 211 (401)
T ss_pred chHHHHHH
Confidence 44544433
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.21 E-value=0.36 Score=38.81 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=41.9
Q ss_pred EEEEE-CCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHc
Q 008150 68 LIVQI-ADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCY 130 (576)
Q Consensus 68 V~v~V-~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY 130 (576)
|+++- +|+.|.+.+.+. -.|+.++.|+.+..... ..|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~-----~~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDED-----EPIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCG-----TEEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccc-----cccccCccC--HHHHHHHHHHHH
Confidence 44544 689999988754 58999999997643221 169999998 679999999997
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=0.59 Score=45.16 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=68.3
Q ss_pred ECCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceE-----------------
Q 008150 72 IADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKV----------------- 134 (576)
Q Consensus 72 V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i----------------- 134 (576)
-+|+.|.+-.. .|.+|.-++.++.+..-... ...|-|+++. +.+|..|++|||--+-
T Consensus 12 sDG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~---~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i 85 (162)
T KOG1724|consen 12 SDGEIFEVEEE-VARQSQTISAHMIEDGCADE---NDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDI 85 (162)
T ss_pred cCCceeehhHH-HHHHhHHHHHHHHHcCCCcc---CCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCc
Confidence 37889998776 45779999998876421110 1258888888 5799999999997331
Q ss_pred --------eeccccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhh
Q 008150 135 --------DVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSI 174 (576)
Q Consensus 135 --------~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 174 (576)
.+...++..|.-||.||+|.. |+..|+......+
T Consensus 86 ~~WD~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mi 127 (162)
T KOG1724|consen 86 PEWDAEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMI 127 (162)
T ss_pred cHHHHHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHH
Confidence 134458899999999999994 9999998887766
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=89.47 E-value=0.44 Score=51.35 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=59.6
Q ss_pred eEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEeeccccHHHHHHHHhhccc
Q 008150 75 SCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEM 153 (576)
Q Consensus 75 ~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~it~~NV~~L~cAA~~LqM 153 (576)
..+|+|..++ +++.||+.||++. .|+..+...+...|+++. ....|.+++|.|+-+-+|-++-...++--|..|-.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999987 6788999999986 442211112344555554 57899999999999999999888888888888877
Q ss_pred ccc
Q 008150 154 SDD 156 (576)
Q Consensus 154 te~ 156 (576)
..+
T Consensus 378 ~~d 380 (516)
T KOG0511|consen 378 ADD 380 (516)
T ss_pred hhh
Confidence 643
No 25
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.40 E-value=0.82 Score=47.47 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=40.0
Q ss_pred EeeeccchhcccCHHHHHhhccc-ccCCCC-----CCCCeEEecCCCCcHHHHHHH-HHHHcCceEeecc
Q 008150 76 CFHLHKLAMVSKSEYLNRIVFKR-RSNGEK-----ENNPMIFISNFPGGIEIFELV-VKFCYGWKVDVTA 138 (576)
Q Consensus 76 ~F~lHK~vLas~S~yfr~lf~~~-~e~~~~-----~~~~~v~L~~~pgGae~felv-~~FcY~~~i~it~ 138 (576)
++.+||.+.+++|++||.++... ++.+++ .....|.+...- -|.+|.-+ +.|+||-+++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I-~PkafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELI-FPKAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhh-cchhhhhhhhhhheecccchhh
Confidence 57799999999999999997532 222111 113466664321 14577654 5789998887643
No 26
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=79.77 E-value=18 Score=38.37 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=67.8
Q ss_pred hhcCCceeEEEEECCeEeeeccchhcccCH-HHHHhhcccc---cCCCCCCCCeEEe-cCCCCcHHHHHHHHHHHcCceE
Q 008150 60 VRAKVASDLIVQIADSCFHLHKLAMVSKSE-YLNRIVFKRR---SNGEKENNPMIFI-SNFPGGIEIFELVVKFCYGWKV 134 (576)
Q Consensus 60 ~~~~~~~DV~v~V~~~~F~lHK~vLas~S~-yfr~lf~~~~---e~~~~~~~~~v~L-~~~pgGae~felv~~FcY~~~i 134 (576)
+..|-.--++..|++..|-.-+++|-+.-. -+-.||..+. ..++ ..+.+. .|+. +..|..+++|--+|.|
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNE---rgEyeVAdGi~--s~vFRAILdYYksG~i 164 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNE---RDEFEVADGMT--SSCFRAILDYYQSGTM 164 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCc---CCceehhcchh--HHHHHHHHHHHhcCce
Confidence 567777788999999999999999877643 3446665431 1222 236666 4664 7899999999989988
Q ss_pred eecc-ccHHHHHHHHhhcccccc
Q 008150 135 DVTA-TNIAALYSAANFLEMSDD 156 (576)
Q Consensus 135 ~it~-~NV~~L~cAA~~LqMte~ 156 (576)
.--+ -.|..|+.|-+||-++-+
T Consensus 165 RCP~~vSvpELrEACDYLlipF~ 187 (438)
T KOG3840|consen 165 RCPSSVSVSELREACDYLLVPFN 187 (438)
T ss_pred eCCCCCchHHHHhhcceEEeecc
Confidence 7533 568899999999998754
No 27
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=69.91 E-value=6 Score=26.15 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008150 550 EVETMKMQLNQLQMCKTQ 567 (576)
Q Consensus 550 e~~~m~~r~~ele~~~~~ 567 (576)
||++.|.|+++||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999999998764
No 28
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=66.32 E-value=4.2 Score=34.22 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=27.4
Q ss_pred eccccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhh
Q 008150 136 VTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSI 174 (576)
Q Consensus 136 it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 174 (576)
++...+..|+.||.||+|.. |+..|+.++...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 46678999999999999995 9999999998766
No 29
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=58.97 E-value=16 Score=29.57 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008150 539 SSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQV 572 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~ 572 (576)
+++.|.+.||..+..+..|.++||.|..-+|+..
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4577899999999999999999999999888753
No 30
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=58.82 E-value=2.5 Score=45.77 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=54.1
Q ss_pred hHHHhhcCCce--eEEEEE-CCeEeeeccchhcccCHHHHHhhcc-cccCCCCCCCCeE-EecCCCCcHHHHHHHHHHHc
Q 008150 56 KDWIVRAKVAS--DLIVQI-ADSCFHLHKLAMVSKSEYLNRIVFK-RRSNGEKENNPMI-FISNFPGGIEIFELVVKFCY 130 (576)
Q Consensus 56 ~~w~~~~~~~~--DV~v~V-~~~~F~lHK~vLas~S~yfr~lf~~-~~e~~~~~~~~~v-~L~~~pgGae~felv~~FcY 130 (576)
++-++.+++.| |++..+ +|..|-+||+.|+++|.||..-+.. .... .+| .+.-+ +.+|+..++|.|
T Consensus 138 ~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~------heI~~~~v~---~~~f~~flk~ly 208 (516)
T KOG0511|consen 138 QSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG------HEIEAHRVI---LSAFSPFLKQLY 208 (516)
T ss_pred HHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc------Cchhhhhhh---HhhhhHHHHHHH
Confidence 44466777633 887766 5789999999999998877643322 2111 133 33344 579999999999
Q ss_pred CceEeeccccHHHHHHHHhhccc
Q 008150 131 GWKVDVTATNIAALYSAANFLEM 153 (576)
Q Consensus 131 ~~~i~it~~NV~~L~cAA~~LqM 153 (576)
-..=.+-+.--.+|+.-..-++.
T Consensus 209 l~~na~~~~qynallsi~~kF~~ 231 (516)
T KOG0511|consen 209 LNTNAEWKDQYNALLSIEVKFSK 231 (516)
T ss_pred HhhhhhhhhHHHHHHhhhhhccH
Confidence 75222222333444444444443
No 31
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=58.59 E-value=25 Score=39.03 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=60.4
Q ss_pred EEEEECCeEeeeccchhcccC--HHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEeeccccHHHHH
Q 008150 68 LIVQIADSCFHLHKLAMVSKS--EYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALY 145 (576)
Q Consensus 68 V~v~V~~~~F~lHK~vLas~S--~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~it~~NV~~L~ 145 (576)
|.+.|||+.|.--+.-|+... .+|.+|+++...+...+ ..-|-| +-.|+.|..+++|.-|+++.+..--...++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~-~~~iFI---DRDPdlFaviLn~LRTg~L~~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDE-SGAIFI---DRDPDLFAVILNLLRTGDLDASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCC-CCceEe---cCCchHHHHHHHHHhcCCCCCccCchhhhh
Confidence 567899999999999887765 69999997542111100 112444 234789999999999999999554444444
Q ss_pred H-HHhhccccc
Q 008150 146 S-AANFLEMSD 155 (576)
Q Consensus 146 c-AA~~LqMte 155 (576)
- =|.|.+++.
T Consensus 89 hdEA~fYGl~~ 99 (465)
T KOG2714|consen 89 HDEAMFYGLTP 99 (465)
T ss_pred hhhhhhcCcHH
Confidence 4 899999996
No 32
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=54.20 E-value=7.6 Score=29.82 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008150 551 VETMKMQLNQLQMCKTQLQNQV 572 (576)
Q Consensus 551 ~~~m~~r~~ele~~~~~m~~~~ 572 (576)
-+++|.||+|||.|.+.+++.=
T Consensus 13 ~e~l~vrv~eLEeEV~~LrKIN 34 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRKIN 34 (48)
T ss_pred cchheeeHHHHHHHHHHHHHHh
Confidence 4678999999999999888753
No 33
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=53.61 E-value=8 Score=34.01 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=31.2
Q ss_pred cCCCccccchhhHHHHHHHHHhCCCCCHHHHhhccccccccc
Q 008150 435 LPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHK 476 (576)
Q Consensus 435 lP~~aR~~~DgLYrAIDiYLk~Hp~ls~~Er~~lC~~ldc~K 476 (576)
+|++..-....+|+|+.+||.+.+..+. .|-++++.-|.+.
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~ 70 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKN 70 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCc
Confidence 3344446678999999999999987775 7888887766655
No 34
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=53.52 E-value=42 Score=31.55 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=62.5
Q ss_pred EECCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEee--------------
Q 008150 71 QIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDV-------------- 136 (576)
Q Consensus 71 ~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~i-------------- 136 (576)
..+|+.|.+.+. .|-+|=.++.|+....+.+ -.+.++++. +..|..+.+||---+=.+
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~n-----~p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTACN-----YPIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhccccccC-----CCCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 457899999886 6788999999887654332 123445555 679999999996432222
Q ss_pred -----------ccccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhh
Q 008150 137 -----------TATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSI 174 (576)
Q Consensus 137 -----------t~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 174 (576)
.......+.-||.||++.. |++.||.-..+.+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 1223456677889999886 8888888776655
No 35
>PHA01750 hypothetical protein
Probab=52.71 E-value=35 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008150 541 HKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKS 574 (576)
Q Consensus 541 ~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~ 574 (576)
..|...||.|++..+.|.-+||++..++|+.+.|
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 6788888888888888888999999998887765
No 36
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.13 E-value=38 Score=32.82 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008150 541 HKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKS 574 (576)
Q Consensus 541 ~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~ 574 (576)
..+|+.|..+++.++.+...+|.++..|-+.|.+
T Consensus 117 ~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 117 QKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555543
No 37
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=47.36 E-value=75 Score=31.23 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=67.3
Q ss_pred eeEEEEECCeEeeeccchhcccC-HHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEeeccccHHHH
Q 008150 66 SDLIVQIADSCFHLHKLAMVSKS-EYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAAL 144 (576)
Q Consensus 66 ~DV~v~V~~~~F~lHK~vLas~S-~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~it~~NV~~L 144 (576)
.=|-+.|||..|.--|.-|.--+ .++.++.....+.....+...--|-|= +|.-|.-+++|.-.|++-++.--=..+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGv 98 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGV 98 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhhhhhhcc
Confidence 34556799999999999998887 566666654321110000122334333 367999999999999999998666778
Q ss_pred HHHHhhcccccccCcChHHHHHHHHHHH
Q 008150 145 YSAANFLEMSDDLDQGNLITKTEAFLSF 172 (576)
Q Consensus 145 ~cAA~~LqMte~~~~~NL~~~ce~FL~~ 172 (576)
+.-|+|...+. |++...+-+.+
T Consensus 99 L~EAefyn~~~------li~likd~i~d 120 (210)
T KOG2715|consen 99 LEEAEFYNDPS------LIQLIKDRIQD 120 (210)
T ss_pred chhhhccCChH------HHHHHHHHHHH
Confidence 88899998885 66555554444
No 38
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=47.35 E-value=66 Score=29.19 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHhhhchhhhccCCCCcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008150 493 LKMRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVSKGLEKGRMSSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQV 572 (576)
Q Consensus 493 lr~vvqvLf~eQ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~ 572 (576)
++..+|-|++-|-.+-..+. .+..+++.+..+.++++..+.+++.+...+|++.
T Consensus 64 aQl~ieYLl~~q~~L~~~~~--------------------------~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLE--------------------------QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999888877654432 2345677788888888888888888888888875
Q ss_pred h
Q 008150 573 K 573 (576)
Q Consensus 573 ~ 573 (576)
+
T Consensus 118 k 118 (118)
T PF13815_consen 118 K 118 (118)
T ss_pred C
Confidence 4
No 39
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=47.01 E-value=27 Score=36.82 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=31.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008150 537 RMSSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKS 574 (576)
Q Consensus 537 ~~~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~ 574 (576)
|-++..|.+.|-..-+++|.|+++||||.+.||+.|-.
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888899999999999999999998754
No 40
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=45.64 E-value=30 Score=37.01 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=24.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 537 RMSSHKEIKVMKKEVETMKMQLNQLQMCKT 566 (576)
Q Consensus 537 ~~~~~~e~~~lr~e~~~m~~r~~ele~~~~ 566 (576)
-..+++||..||.|.+.+|.+|..||.+..
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999999999999987743
No 41
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.13 E-value=39 Score=28.91 Aligned_cols=25 Identities=12% Similarity=0.416 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008150 549 KEVETMKMQLNQLQMCKTQLQNQVK 573 (576)
Q Consensus 549 ~e~~~m~~r~~ele~~~~~m~~~~~ 573 (576)
.||+.||..|.+||....+||....
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998754
No 42
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.17 E-value=38 Score=36.32 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008150 539 SSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKSWR 576 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~~~ 576 (576)
.++.+|+.|+.|++.+|.++.|++.++.-++..+.+.|
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 34788999999999999999999999999998887754
No 43
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=42.04 E-value=1.3e+02 Score=31.05 Aligned_cols=91 Identities=13% Similarity=0.193 Sum_probs=64.9
Q ss_pred EEEEECCeEeeeccchhcccC--HHHHHhhccc-ccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceE-eeccccHHH
Q 008150 68 LIVQIADSCFHLHKLAMVSKS--EYLNRIVFKR-RSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKV-DVTATNIAA 143 (576)
Q Consensus 68 V~v~V~~~~F~lHK~vLas~S--~yfr~lf~~~-~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i-~it~~NV~~ 143 (576)
|.+.++|+.|.--..-|.-+= ..+-+||... .-+++ +.....|-|=+ |.-||-++.|.-.|.| ..+.-|+..
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~--d~kGa~lIDRs--p~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQE--DKKGAVLIDRS--PKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCcccc--ccCceEEEccC--chhhHHHHHHHhcCceeecCCccHHH
Confidence 557899999998887777763 4678899763 21111 11233343333 5799999999999886 466789999
Q ss_pred HHHHHhhcccccccCcChHHHHHHH
Q 008150 144 LYSAANFLEMSDDLDQGNLITKTEA 168 (576)
Q Consensus 144 L~cAA~~LqMte~~~~~NL~~~ce~ 168 (576)
++.+|.|+|+-. |+..-|.
T Consensus 87 vLeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHHhhHHhhHh------HHhHHhh
Confidence 999999999975 6665555
No 44
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=41.93 E-value=31 Score=36.95 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008150 548 KKEVETMKMQLNQLQMCKTQLQNQVKS 574 (576)
Q Consensus 548 r~e~~~m~~r~~ele~~~~~m~~~~~~ 574 (576)
|.||+.+..|+.||||+...|++++..
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777888888888877777764
No 45
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=41.76 E-value=58 Score=27.54 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008150 539 SSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVK 573 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~ 573 (576)
.+..||-+||.+++.|+..+.++++......+.++
T Consensus 40 ~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 40 ELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999888888765
No 46
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.04 E-value=43 Score=34.50 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=27.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 008150 537 RMSSHKEIKVMKKEVETMKMQLN---QLQMCKTQLQNQV 572 (576)
Q Consensus 537 ~~~~~~e~~~lr~e~~~m~~r~~---ele~~~~~m~~~~ 572 (576)
...+..||++||.|++.++.+.. ++++|-.++++.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568999999999999998888 5566666666654
No 47
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=40.41 E-value=54 Score=31.10 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=30.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008150 537 RMSSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVK 573 (576)
Q Consensus 537 ~~~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~ 573 (576)
-.+++.|+..|-.++..|+.||++||.-.+...+.|+
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4466788888888899999999999998888777665
No 48
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.46 E-value=56 Score=34.27 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 008150 539 SSHKEIKVMKKEVETMKMQLN----QLQMCKTQLQNQV 572 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~----ele~~~~~m~~~~ 572 (576)
.+..||++||.+++.++.++. +|++|-.++|+.+
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999877755555 4777777777654
No 49
>smart00338 BRLZ basic region leucin zipper.
Probab=37.20 E-value=87 Score=25.13 Aligned_cols=34 Identities=15% Similarity=0.355 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008150 540 SHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVK 573 (576)
Q Consensus 540 ~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~ 573 (576)
+..+.+.|..+.+.|+.++..|+.+...++..+.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777788888888888888888777653
No 50
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=36.16 E-value=72 Score=28.39 Aligned_cols=38 Identities=16% Similarity=0.429 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008150 539 SSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKSWR 576 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~~~ 576 (576)
-+++..+=-+.|-+-||..+++||.+-..|..+|.|++
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888999999999999999999999998864
No 51
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.69 E-value=96 Score=25.26 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 541 HKEIKVMKKEVETMKMQLNQLQMCKTQL 568 (576)
Q Consensus 541 ~~e~~~lr~e~~~m~~r~~ele~~~~~m 568 (576)
.+++..|+.+++.++.+..+|+++...+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555554444444
No 52
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.08 E-value=63 Score=37.38 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=86.8
Q ss_pred hhhHHHHhhhhhhhhhcCCCCCChhHHHHHHHHcCCCccccc--hhhHHHHHHHHHhCCCCCHHHHhhcccc--ccc---
Q 008150 402 RIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCD--DNLYRAMDIYLKAHPDLTEEERTSVSRA--MEF--- 474 (576)
Q Consensus 402 ~l~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~--DgLYrAIDiYLk~Hp~ls~~Er~~lC~~--ldc--- 474 (576)
...|+|.-++.-|. -||..|++++=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+-==-. +|-
T Consensus 303 ~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~ri 380 (652)
T COG2433 303 TVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERI 380 (652)
T ss_pred HHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 35666666666553 78999999988888888888888877 8899999999987777777776521111 110
Q ss_pred -----ccCCHHHHHHHHhCCCCchhHHHHHHHHHhhhchhhhccCCCCcccCCccccccccccccccccchHHHHHHHHH
Q 008150 475 -----HKLSQEARQHMMKNERLPLKMRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVSKGLEKGRMSSHKEIKVMKK 549 (576)
Q Consensus 475 -----~KLS~Eac~HAaQNerlPlr~vvqvLf~eQ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~ 549 (576)
.-.|..+|.--+.-++.|= --.++ |-+.+.-+ .+..-.. ...+.....+.+||+.|+.
T Consensus 381 ka~VIrG~~l~eal~~~~e~~~p~-e~~~~----~~~e~~ei-----------~~~~~~i-~~~~~~ve~l~~e~~~L~~ 443 (652)
T COG2433 381 KALVIRGYPLAEALSKVKEEERPR-EKEGT----EEEERREI-----------TVYEKRI-KKLEETVERLEEENSELKR 443 (652)
T ss_pred HHHeecCCcHHHHHHHHHhhhccc-ccccc----ccccccch-----------hHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 0112222211111111110 00000 00000000 0000000 0011122356789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 008150 550 EVETMKMQLNQLQMCKTQLQNQVK 573 (576)
Q Consensus 550 e~~~m~~r~~ele~~~~~m~~~~~ 573 (576)
+++.||..+..||.++..|++.+.
T Consensus 444 ~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 444 ELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 53
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.29 E-value=39 Score=34.83 Aligned_cols=90 Identities=18% Similarity=0.070 Sum_probs=62.6
Q ss_pred CeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHHHHHHHHcCceEeeccccHH---HHHHHHhh
Q 008150 74 DSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIA---ALYSAANF 150 (576)
Q Consensus 74 ~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~felv~~FcY~~~i~it~~NV~---~L~cAA~~ 150 (576)
+..+..|+.+++++|+-|+.|+........ ...+.+.+.. ++.|+.+..|.|...-.-+..++- .+.++|.-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~---~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~ 183 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKES---SKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFK 183 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhc---cccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhccc
Confidence 455999999999999999999875421110 1234555554 678888899999865444455554 66667666
Q ss_pred cccccccCcChHHHHHHHHHHHhh
Q 008150 151 LEMSDDLDQGNLITKTEAFLSFSI 174 (576)
Q Consensus 151 LqMte~~~~~NL~~~ce~FL~~~v 174 (576)
.+-. .|...|+..|.+.+
T Consensus 184 ~~~~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 184 YKNR------HLKLACMPVLLSLI 201 (297)
T ss_pred cccH------HHHHHHHHHHHHHH
Confidence 6665 48888888887765
No 54
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.43 E-value=33 Score=27.69 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHhCCCCCH
Q 008150 444 DNLYRAMDIYLKAHPDLTE 462 (576)
Q Consensus 444 DgLYrAIDiYLk~Hp~ls~ 462 (576)
--||.|+.-||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3599999999999998654
No 55
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.30 E-value=1.3e+02 Score=24.08 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 541 HKEIKVMKKEVETMKMQLNQLQMCKTQLQNQ 571 (576)
Q Consensus 541 ~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~ 571 (576)
..+...|..+.+.|+.++..|+.++..|+.+
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666666666666666666654
No 56
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.64 E-value=88 Score=30.37 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008150 540 SHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVK 573 (576)
Q Consensus 540 ~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~ 573 (576)
+..||+.|+.++..++.++.+||++..++++.+.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999888877654
No 57
>PF15294 Leu_zip: Leucine zipper
Probab=29.82 E-value=90 Score=32.88 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 539 SSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQ 571 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~ 571 (576)
-+..|+..|+.|.+++|.|+..+|++|..+-++
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~E 161 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDE 161 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999997765443
No 58
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.62 E-value=1.2e+02 Score=24.69 Aligned_cols=34 Identities=6% Similarity=0.136 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008150 542 KEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKSW 575 (576)
Q Consensus 542 ~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~~ 575 (576)
..|..+...+.....|-.+|+.+...|+++|+.+
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555556666666677777777777777654
No 59
>PLN03205 ATR interacting protein; Provisional
Probab=29.26 E-value=60 Score=36.01 Aligned_cols=30 Identities=33% Similarity=0.369 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 542 KEIKVMKKEVETMKMQLNQLQMCKTQLQNQ 571 (576)
Q Consensus 542 ~e~~~lr~e~~~m~~r~~ele~~~~~m~~~ 571 (576)
-|+..||.|++++-.++-+.|.+|+.+|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (652)
T PLN03205 134 LEIDRLKKELERVSKQLLDVEQECSQLKKG 163 (652)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 489999999999999999999999999874
No 60
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=29.16 E-value=40 Score=33.90 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=26.7
Q ss_pred HHHcC--CCccccchhhHHHHHHHHHhCCCCCHHHHh
Q 008150 432 AEALP--KSARVCDDNLYRAMDIYLKAHPDLTEEERT 466 (576)
Q Consensus 432 ae~lP--~~aR~~~DgLYrAIDiYLk~Hp~ls~~Er~ 466 (576)
.+-+| +..+..-+|=|+||.-|||.||+==|.++.
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 34456 556667899999999999999975555554
No 61
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.82 E-value=97 Score=31.65 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhhchhhhc
Q 008150 480 EARQHMMKNERLPLKMRARYILLEQVNITKVMT 512 (576)
Q Consensus 480 Eac~HAaQNerlPlr~vvqvLf~eQ~~lr~~~~ 512 (576)
=-|.|.++|.-..++.-++-+..+.-+++..+.
T Consensus 12 ~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 12 FYCANCVNNRLLELRSELQQLKEENEELRRRIE 44 (302)
T ss_pred eECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888777888888888888777776554
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.28 E-value=1.3e+02 Score=30.33 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008150 540 SHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQV 572 (576)
Q Consensus 540 ~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~ 572 (576)
+..||+.|+.+++..+.++.+||.+...+++.+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999988887654
No 63
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.24 E-value=1.9e+02 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 545 KVMKKEVETMKMQLNQLQMCKTQLQNQ 571 (576)
Q Consensus 545 ~~lr~e~~~m~~r~~ele~~~~~m~~~ 571 (576)
..||..++.|+.+|.-||...+.-|+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777766654
No 64
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.92 E-value=1.5e+02 Score=26.50 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 539 SSHKEIKVMKKEVETMKMQLNQLQMCKTQLQN 570 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~ 570 (576)
...++.+.++.+++.++.+-.+|+++...++.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34566666666666666666666666666554
No 65
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.68 E-value=1.7e+02 Score=25.80 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008150 540 SHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKSW 575 (576)
Q Consensus 540 ~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~~ 575 (576)
+....+.+..++.++..++.+++++..+++..|.++
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777888888888888888888888887765
No 66
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.95 E-value=67 Score=33.22 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 542 KEIKVMKKEVETMKMQLNQLQMCKTQLQN 570 (576)
Q Consensus 542 ~e~~~lr~e~~~m~~r~~ele~~~~~m~~ 570 (576)
+-|.+|..|+.+.+..+.+|+.|..++|+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 67
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.82 E-value=1.1e+02 Score=24.61 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 008150 539 SSHKEIKVMKKEVETMKMQLNQL 561 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~el 561 (576)
++++||+.++.++++|...+.+|
T Consensus 18 tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 68
>PRK15322 invasion protein OrgB; Provisional
Probab=23.12 E-value=2e+02 Score=28.98 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=54.1
Q ss_pred cchhHHHHHHHHHHhchhcCCC-------chhhHHHHhhhhhhhhhcCCC--------------------CCChhHHHHH
Q 008150 379 YHVGIVVRVVECYVSFVLRNPA-------PRIFVVGRLVDGYLTLIARDK--------------------NLAAKRFQLL 431 (576)
Q Consensus 379 yDvd~V~riv~~Fl~~~~~~~~-------~~l~~VakLvD~YLaEiA~D~--------------------~L~~~kF~~L 431 (576)
=|+|...++++.|+......+. ......+.=+-.||.|..+++ ..+|..|++.
T Consensus 90 d~pd~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFsPq~~v~~ 169 (210)
T PRK15322 90 DHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFSPEQFVET 169 (210)
T ss_pred cCHHHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccCHHHHHHH
Confidence 4678899999999875543322 234556666677777766544 4689999999
Q ss_pred HHH--------cCCCccccchhhHHHHHHHHHhCC
Q 008150 432 AEA--------LPKSARVCDDNLYRAMDIYLKAHP 458 (576)
Q Consensus 432 ae~--------lP~~aR~~~DgLYrAIDiYLk~Hp 458 (576)
|+. +|..+|...||=--|.=-|||.|-
T Consensus 170 a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~~ 204 (210)
T PRK15322 170 AVGVIKHHLDELPQDCRTISDNAINALIDEWKTKT 204 (210)
T ss_pred HHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHhc
Confidence 986 555667666666666655666663
No 69
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.97 E-value=2e+02 Score=24.76 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 539 SSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQ 571 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~ 571 (576)
.+.+++..|+..|+.|-.|+.+.+.+|.+++++
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999999888764
No 70
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=22.88 E-value=2.5e+02 Score=31.88 Aligned_cols=97 Identities=10% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCceeEEEEECCeEeeeccchhccc-CHHHHHhhccc-ccCC----C--CCCCCeEEecCCCCcHHHHHHHHHHHcCceE
Q 008150 63 KVASDLIVQIADSCFHLHKLAMVSK-SEYLNRIVFKR-RSNG----E--KENNPMIFISNFPGGIEIFELVVKFCYGWKV 134 (576)
Q Consensus 63 ~~~~DV~v~V~~~~F~lHK~vLas~-S~yfr~lf~~~-~e~~----~--~~~~~~v~L~~~pgGae~felv~~FcY~~~i 134 (576)
....-|+|.|||.++.+-+..|... =.++.++.... .+.. . .....+.-+.-- |.+|..+++|-+||++
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~---P~~F~~Vl~fYrtGkL 104 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRH---PGAFAYVLNFYRTGKL 104 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccC---hHHHHHHHHHHhcCee
Confidence 4455688999999999988777652 12344444311 0000 0 001235555433 5699999999999999
Q ss_pred eeccccHHHHHH--HHhhcccccccCcChHHHHHHH
Q 008150 135 DVTATNIAALYS--AANFLEMSDDLDQGNLITKTEA 168 (576)
Q Consensus 135 ~it~~NV~~L~c--AA~~LqMte~~~~~NL~~~ce~ 168 (576)
.. +.+|..+.- =-+|-++.+ +-++.||.
T Consensus 105 H~-p~~vC~~~F~eEL~yWgI~~-----~~le~CC~ 134 (477)
T KOG3713|consen 105 HV-PADVCPLSFEEELDYWGIDE-----AHLESCCW 134 (477)
T ss_pred cc-ccccchHHHHHHHHHhCCCh-----hhhhHHhH
Confidence 97 455544433 336777776 34555554
No 71
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.69 E-value=57 Score=27.83 Aligned_cols=16 Identities=31% Similarity=0.413 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhCCC
Q 008150 444 DNLYRAMDIYLKAHPD 459 (576)
Q Consensus 444 DgLYrAIDiYLk~Hp~ 459 (576)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999974
No 72
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.62 E-value=1.8e+02 Score=28.79 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008150 541 HKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKS 574 (576)
Q Consensus 541 ~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~ 574 (576)
.+|+.+||..++.|...+.++++.+..+...+.+
T Consensus 105 ~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~ 138 (181)
T KOG3335|consen 105 KQEIMELRLKVEKLENAIAELTKFFSQLHSKLNK 138 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5666777777777777777777777776555443
No 73
>PRK14127 cell division protein GpsB; Provisional
Probab=22.62 E-value=1.2e+02 Score=27.54 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 537 RMSSHKEIKVMKKEVETMKMQLNQLQMCKT 566 (576)
Q Consensus 537 ~~~~~~e~~~lr~e~~~m~~r~~ele~~~~ 566 (576)
+..+.+||..|+.++.+++.++.+++....
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445577888888888888888888887654
No 74
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=22.60 E-value=2e+02 Score=26.27 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008150 552 ETMKMQLNQLQMCKTQLQNQVK 573 (576)
Q Consensus 552 ~~m~~r~~ele~~~~~m~~~~~ 573 (576)
+.+-.|+..||.....+|..+.
T Consensus 43 DElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 43 DELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH
Confidence 4444444455544444444443
No 75
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.60 E-value=1.1e+02 Score=24.37 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 008150 542 KEIKVMKKEVE 552 (576)
Q Consensus 542 ~e~~~lr~e~~ 552 (576)
++++.++.+++
T Consensus 48 ~~~~~~~k~l~ 58 (68)
T PF06305_consen 48 RRIRRLRKELK 58 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 76
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.12 E-value=2.6e+02 Score=28.20 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008150 551 VETMKMQLNQLQMCKTQLQ 569 (576)
Q Consensus 551 ~~~m~~r~~ele~~~~~m~ 569 (576)
++.+|++..+.|.|..+|+
T Consensus 103 Lq~~qmem~~~Q~elmk~q 121 (201)
T COG1422 103 LQEKQMEMMDDQRELMKMQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666666777766665554
No 77
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=21.99 E-value=1.6e+02 Score=23.43 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHcCCCccccchh---hHHHHHHHHHhCCCCCHHHHhhcccccccccCCHHHHHHHHhCCC
Q 008150 422 NLAAKRFQLLAEALPKSARVCDDN---LYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNER 490 (576)
Q Consensus 422 ~L~~~kF~~Lae~lP~~aR~~~Dg---LYrAIDiYLk~Hp~ls~~Er~~lC~~ldc~KLS~Eac~HAaQNer 490 (576)
.||.++...+...-|+..|.+-|. +++|..+|+.. |+.+|..+|.++.|
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~--------------------l~~~A~~~a~~~~r 53 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQY--------------------LAKEANEIAQRDKR 53 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHTTS
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHcCC
Confidence 588999999999999998877776 56788888874 67778888777766
No 78
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.80 E-value=1.8e+02 Score=29.82 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008150 540 SHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKS 574 (576)
Q Consensus 540 ~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~ 574 (576)
+..|+.+|..+++..+.|+.+||.+.+.+...+++
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777788888888888887766655544
No 79
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.76 E-value=1.3e+02 Score=32.20 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=32.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 535 KGRMSSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQ 571 (576)
Q Consensus 535 ~~~~~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~ 571 (576)
..+.++.++|+.||.+++.-|.|+..|+.+...++..
T Consensus 27 ~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 27 KRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999998877764
No 80
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.02 E-value=1.6e+02 Score=24.59 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 538 MSSHKEIKVMKKEVETMKMQLNQLQMCKTQLQN 570 (576)
Q Consensus 538 ~~~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~ 570 (576)
..+..|+..|+.++..++..+.+|...+..+..
T Consensus 54 I~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~ 86 (87)
T PF08700_consen 54 IEASDEISSMENDLSELRNLLSELQQSIQSLQE 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355788999999999999999999998887753
No 81
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.65 E-value=1.2e+02 Score=27.50 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 537 RMSSHKEIKVMKKEVETMKMQLNQLQM 563 (576)
Q Consensus 537 ~~~~~~e~~~lr~e~~~m~~r~~ele~ 563 (576)
...+..||..||.|.+.+|.|+.+++.
T Consensus 31 ~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 31 LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446689999999999999999999987
No 82
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.58 E-value=99 Score=23.55 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHH
Q 008150 539 SSHKEIKVMKKEVETMKM 556 (576)
Q Consensus 539 ~~~~e~~~lr~e~~~m~~ 556 (576)
++..||+.|+.|++.+|.
T Consensus 16 ~LteeNrRL~ke~~eLra 33 (44)
T smart00340 16 SLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 567889999888887774
No 83
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.40 E-value=2.8e+02 Score=23.32 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008150 540 SHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKSW 575 (576)
Q Consensus 540 ~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~~~~~ 575 (576)
+.+||++||.+-..++..-.+|+.+-..+++.-..|
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444555555555555444443
No 84
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=20.26 E-value=1.8e+02 Score=22.56 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 008150 551 VETMKMQLNQLQMCKTQLQNQVKS 574 (576)
Q Consensus 551 ~~~m~~r~~ele~~~~~m~~~~~~ 574 (576)
++.+|.||..||.+.+.++..+.+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888876654
No 85
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.16 E-value=1.6e+02 Score=30.43 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008150 540 SHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQ 571 (576)
Q Consensus 540 ~~~e~~~lr~e~~~m~~r~~ele~~~~~m~~~ 571 (576)
+.+.++.|+.|+.+||-++.++..+...|++.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777666654
Done!