RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008151
(576 letters)
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 85.8 bits (211), Expect = 1e-19
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 36/245 (14%)
Query: 311 KNPVELDGLKKA-HIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLT 369
K E++ ++KA I D A + ++EI T
Sbjct: 1 KTKEEIEIIEKACEIADKA--------VMAAIEEI--------------------TEGKR 32
Query: 370 EVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGA 429
E V+ K+E + +F TI + G +A+ H + D + + D GA
Sbjct: 33 EREVAAKVEYLMKMNGAEKP-AFDTIIASGHRSALPHGVASDKRIERGD---LVVIDLGA 88
Query: 430 QYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWK 489
Y +DITRT G P+ ++ Y VL+ A P G LD +AR + +
Sbjct: 89 LYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKP-GMTAKELDSIAREIIKE 147
Query: 490 YGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENV 549
YG G G L +HE P+ + + M T EPG Y G+R+E+
Sbjct: 148 YGYGDYFIHSLGHGVGLEIHEWPRISQYDET--VLKEGMVITIEPGIYIPKLGGVRIEDT 205
Query: 550 LVVTD 554
+++T+
Sbjct: 206 VLITE 210
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 74.9 bits (183), Expect = 1e-15
Identities = 42/264 (15%), Positives = 74/264 (28%), Gaps = 45/264 (17%)
Query: 310 IKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIY-GASGYFLEGEATKEKKHSGTVKL 368
IK P +++ ++ A + + L+ + G S L+
Sbjct: 3 IKTPEDIEKMRVA-----GRLAAEV--LEMIEPYVKPGVSTGELDRICNDYI-------- 47
Query: 369 TEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSG 428
+ A +P + N + H P + I D
Sbjct: 48 --------VNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDD--AKLLKDGDIVNIDVT 97
Query: 429 AQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLW 488
D ++ F GKP+ + + V P G + + +
Sbjct: 98 VIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKP-GINLREIGAAIQKFVE 156
Query: 489 KYGLDY-RHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------- 537
G R GHG+G + + NV + MT T EP
Sbjct: 157 AEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK 216
Query: 538 -------EDGNFGIRLENVLVVTD 554
+D + + E+ +VVTD
Sbjct: 217 DGWTVKTKDRSLSAQYEHTIVVTD 240
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 71.6 bits (174), Expect = 1e-14
Identities = 50/264 (18%), Positives = 82/264 (31%), Gaps = 46/264 (17%)
Query: 310 IKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLT 369
IK P E++ +KKA G A+ + + K + G + + +E
Sbjct: 4 IKTPSEIEKMKKA----GKAVAVALREVRKVIVP--GKTAWDVETL-------------- 43
Query: 370 EVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGA 429
V + + R + + V N ++H P E + D GA
Sbjct: 44 ---VLEIFKKLRVKPAFKGYGGYKYATCVSVNEEVVHGLPLKEKVFKEGDI--VSVDVGA 98
Query: 430 QYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWK 489
YQ D T+ G+ K + + P G +
Sbjct: 99 VYQGLYGDAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESV 158
Query: 490 YGLDYRHGTGHGVGSYLNVHEGPQSISFKPRN--VPIHASMTATDEPGYYE--------- 538
R GHGVG +HE PQ ++ V + MT EP E
Sbjct: 159 GFNVIRDYVGHGVG--RELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKE 216
Query: 539 --------DGNFGIRLENVLVVTD 554
DG+ E+ +++T+
Sbjct: 217 DGWTAVTVDGSRCAHFEHTILITE 240
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 65.5 bits (158), Expect = 2e-12
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 29/211 (13%)
Query: 369 TEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSG 428
E + ++ ++ R S+ TI G N I+HY+ + D + L D+G
Sbjct: 31 FEYHLEGEIHHE-FNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGD---LVLIDAG 86
Query: 429 AQYQDGTTDITRTFHF-GKPSAHEKACYTAVLKGHIALGNAVFPNGTC----GHTLDILA 483
+Y+ DITRTF GK + ++ Y VL+ P + G + I+
Sbjct: 87 CEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMV 146
Query: 484 RLPLWKYGLDY-----------RHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATD 532
+ L R HG+ +L + + + R+ + M T
Sbjct: 147 SGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTV 206
Query: 533 EPGYY---------EDGNFGIRLENVLVVTD 554
PG Y + GIR+E+ +V+T+
Sbjct: 207 APGLYIAPDAEVPEQYRGIGIRIEDDIVITE 237
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 62.0 bits (149), Expect = 2e-11
Identities = 37/252 (14%), Positives = 68/252 (26%), Gaps = 33/252 (13%)
Query: 310 IKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIY-GASGYFLEGEATKEKKHSGTVKL 368
IK+ E ++ A I ++ + Y + AT+ +
Sbjct: 2 IKSAEEHVMIRHG-----ARIADIG--GAAVVEALGDQVPEYEVALHATQAMVRAI---- 50
Query: 369 TEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSG 428
+ E + T G N H + + D I +
Sbjct: 51 ------------ADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGD---ILSLNCF 95
Query: 429 AQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPL- 487
T + RT S + ++ H A + P C L + L
Sbjct: 96 PMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLK 155
Query: 488 WKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRN-VPIHASMTATDEPGYY----EDGNF 542
G GH G+ + + + + + M + EP G
Sbjct: 156 HDVLQYRTFGYGHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGAG 215
Query: 543 GIRLENVLVVTD 554
G R ++L+V +
Sbjct: 216 GYREHDILIVNE 227
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 52.2 bits (124), Expect = 5e-08
Identities = 32/203 (15%), Positives = 54/203 (26%), Gaps = 19/203 (9%)
Query: 369 TEVTVSDKLESF----RASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYL 424
T + + +KLE GL+FPT S+ AA HY+P + + + I
Sbjct: 83 TMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAA--HYTPNAGDTTVLQYDDICK 140
Query: 425 CDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILAR 484
D G D T F I G + +
Sbjct: 141 IDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVME 200
Query: 485 LPLWKYGL------DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY- 537
+ R+ GH +G Y I + E
Sbjct: 201 SYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGST 260
Query: 538 ------EDGNFGIRLENVLVVTD 554
G++ + E+ +++
Sbjct: 261 GKGVVDIKGSYTAQFEHTILLRP 283
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 48.1 bits (113), Expect = 7e-07
Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 10/189 (5%)
Query: 369 TEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSG 428
+ +++ +E E +FP S+ AA T + D G
Sbjct: 29 LLLELAESIEKMI--MELGGKPAFPVNLSINEIAAHYTPYKGDTTV--LKEGDYLKIDVG 84
Query: 429 AQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLW 488
D T G L I++ A G ++ R +
Sbjct: 85 VHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGF 144
Query: 489 KYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRN-VPIHASMTATDEPGYY--EDGNFGIR 545
K + +GH + Y ++P + + EP +
Sbjct: 145 KP---IVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGARNGIVAQ 201
Query: 546 LENVLVVTD 554
E+ ++V
Sbjct: 202 FEHTIIVEK 210
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 45.2 bits (105), Expect = 8e-06
Identities = 36/264 (13%), Positives = 66/264 (25%), Gaps = 45/264 (17%)
Query: 310 IKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLT 369
+K EL LK+ G + + + G + L+ A +
Sbjct: 3 VKTEEELQALKEI----GYICAKVRNTMQAATKP--GITTKELDNIAKEL---------- 46
Query: 370 EVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGA 429
F + + + + + + D A
Sbjct: 47 ----------FEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSA 96
Query: 430 QYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGN-AVFPNGTCGHTLDILARLPLW 488
D +F G+ K V V P + +
Sbjct: 97 LKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQ 156
Query: 489 KYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRN-VPIHASMTATDEPGYYE--------- 538
++ TGHGVG L+ F P++ + M EP
Sbjct: 157 NDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGK 216
Query: 539 --------DGNFGIRLENVLVVTD 554
D +F ++E+ ++VT
Sbjct: 217 NEWAFETSDKSFVAQIEHTVIVTK 240
>d1j23a_ c.52.1.20 (A:) Putative ATP-dependent RNA helicase Hef,
nuclease domain {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 131
Score = 27.9 bits (62), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 225 LYVDKRKVSSEVISFLKESGVEVR-------DYDAVSSDVV 258
+ VD R++ SEV+ LK GV++ DY +S DV
Sbjct: 3 VVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDY-IISEDVA 42
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
303]}
Length = 155
Score = 27.9 bits (61), Expect = 2.5
Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 16/127 (12%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWL--YNIRGTDVPYCPVVHAFAIVTTNAAFLYV 227
+ LR L E I T+ + + + PY VV +++ +A
Sbjct: 25 NRQARLRAHLAAENIDAAIFTSYHNINYYSDFLYCSFGRPYALVVTEDDVISISANIDGG 84
Query: 228 DKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYA 287
+ + + + + A+ + + I + + +
Sbjct: 85 QPWRRTVGTDNIVYTDWQRDNYFAAIQQ--------------ALPKARRIGIEHDHLNLQ 130
Query: 288 LYSKLNS 294
KL +
Sbjct: 131 NRDKLAA 137
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 28.0 bits (62), Expect = 3.0
Identities = 11/117 (9%), Positives = 33/117 (28%), Gaps = 17/117 (14%)
Query: 58 TMNEALLWTDGRYFLQATQELTGEWKLMRMLE--------DPAVDVWMANNLPNDAAIGV 109
+ G ++ + + M++ + N++P D
Sbjct: 41 HIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSS- 99
Query: 110 DPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKN------RPPVETYPVTVQQ 160
+ ++I+ + + + ++ LV + N R P + +
Sbjct: 100 --FSITINHRKTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAE 154
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
[TaxId: 10665]}
Length = 193
Score = 26.8 bits (58), Expect = 6.5
Identities = 9/45 (20%), Positives = 12/45 (26%)
Query: 204 TDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLKESGVEVR 248
T P A A K L+ +G+EV
Sbjct: 128 TLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWDDILRNAGIEVF 172
>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella
pertussis [TaxId: 520]}
Length = 318
Score = 26.7 bits (57), Expect = 8.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 239 FLKESGVEVRDYDAVSSDVVLLQSNQLNPPADV 271
F K+SG++V + +++ PADV
Sbjct: 21 FAKDSGIKVNTVFVKDGLLERVRAEGDKSPADV 53
>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD
{Salmonella enterica [TaxId: 28901]}
Length = 355
Score = 26.7 bits (57), Expect = 8.2
Identities = 6/58 (10%), Positives = 15/58 (25%)
Query: 195 VAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLKESGVEVRDYDA 252
WL + + A +L + + ++ L + +R
Sbjct: 268 WHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRILIRSCAN 325
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.398
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,172,810
Number of extensions: 101603
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 15
Length of query: 576
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 486
Effective length of database: 1,171,896
Effective search space: 569541456
Effective search space used: 569541456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)