Query 008152
Match_columns 576
No_of_seqs 394 out of 2720
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 20:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02908 threonyl-tRNA synthet 100.0 5E-115 1E-119 987.8 58.0 521 39-564 11-649 (686)
2 PRK12444 threonyl-tRNA synthet 100.0 2.1E-98 5E-103 849.0 55.5 478 82-564 4-602 (639)
3 KOG1637 Threonyl-tRNA syntheta 100.0 2E-101 4E-106 794.1 21.5 404 84-565 2-520 (560)
4 PRK00413 thrS threonyl-tRNA sy 100.0 2.2E-90 4.7E-95 785.4 53.3 477 83-564 1-599 (638)
5 COG0441 ThrS Threonyl-tRNA syn 100.0 6.9E-91 1.5E-95 761.2 39.4 429 118-566 2-549 (589)
6 PLN02837 threonine-tRNA ligase 100.0 2.1E-86 4.5E-91 744.4 45.2 421 137-564 29-575 (614)
7 PRK12305 thrS threonyl-tRNA sy 100.0 1.6E-82 3.4E-87 712.6 45.5 414 146-564 1-536 (575)
8 TIGR00418 thrS threonyl-tRNA s 100.0 5.8E-76 1.3E-80 658.2 42.4 406 155-564 1-530 (563)
9 PRK14799 thrS threonyl-tRNA sy 100.0 2.4E-70 5.2E-75 602.2 31.6 333 222-564 46-498 (545)
10 PRK03991 threonyl-tRNA synthet 100.0 1.1E-48 2.3E-53 436.6 24.9 247 311-565 302-560 (613)
11 cd00771 ThrRS_core Threonyl-tR 100.0 4.3E-44 9.4E-49 370.5 18.5 277 184-504 20-298 (298)
12 PRK12325 prolyl-tRNA synthetas 100.0 9.7E-39 2.1E-43 346.7 21.6 328 184-566 37-410 (439)
13 PRK04173 glycyl-tRNA synthetas 100.0 1.6E-35 3.5E-40 321.9 21.5 255 270-565 136-424 (456)
14 TIGR00408 proS_fam_I prolyl-tR 100.0 2.6E-34 5.5E-39 314.2 19.3 220 311-567 119-351 (472)
15 PRK08661 prolyl-tRNA synthetas 100.0 4.1E-33 8.9E-38 305.3 20.5 219 310-566 124-356 (477)
16 PRK09194 prolyl-tRNA synthetas 100.0 5.3E-29 1.2E-33 278.6 25.0 335 184-564 37-531 (565)
17 TIGR00409 proS_fam_II prolyl-t 100.0 1.6E-28 3.5E-33 273.3 24.2 337 184-566 37-538 (568)
18 PRK14894 glycyl-tRNA synthetas 99.9 5.7E-25 1.2E-29 234.5 17.6 238 304-561 151-494 (539)
19 TIGR00389 glyS_dimeric glycyl- 99.9 5.9E-25 1.3E-29 240.7 18.1 262 292-566 161-520 (551)
20 PLN02734 glycyl-tRNA synthetas 99.9 1.4E-24 3E-29 241.0 17.3 264 292-563 253-631 (684)
21 KOG2324 Prolyl-tRNA synthetase 99.9 7.4E-24 1.6E-28 214.1 14.5 235 312-562 130-394 (457)
22 CHL00201 syh histidine-tRNA sy 99.9 9.3E-23 2E-27 221.4 20.5 306 199-563 18-384 (430)
23 COG0124 HisS Histidyl-tRNA syn 99.9 1.1E-21 2.3E-26 209.9 22.3 307 198-564 17-395 (429)
24 COG0423 GRS1 Glycyl-tRNA synth 99.9 4.5E-22 9.7E-27 211.5 15.6 97 467-566 411-520 (558)
25 COG0442 ProS Prolyl-tRNA synth 99.8 3.6E-20 7.8E-25 200.8 14.7 248 309-564 121-470 (500)
26 KOG4163 Prolyl-tRNA synthetase 99.8 1.2E-20 2.6E-25 194.5 5.8 224 307-572 175-416 (551)
27 PLN02530 histidine-tRNA ligase 99.8 4.3E-18 9.3E-23 187.7 24.4 303 199-563 84-460 (487)
28 cd00778 ProRS_core_arch_euk Pr 99.8 1.3E-19 2.7E-24 184.5 10.2 145 311-492 113-260 (261)
29 PRK00037 hisS histidyl-tRNA sy 99.8 3.9E-18 8.3E-23 184.6 19.7 300 198-563 17-377 (412)
30 cd00670 Gly_His_Pro_Ser_Thr_tR 99.8 3.2E-18 7E-23 170.8 12.6 152 312-491 83-235 (235)
31 TIGR00442 hisS histidyl-tRNA s 99.7 1.5E-16 3.3E-21 171.4 21.7 306 198-563 13-381 (397)
32 PRK01584 alanyl-tRNA synthetas 99.7 1.5E-16 3.3E-21 175.9 15.3 135 151-300 452-590 (594)
33 cd00772 ProRS_core Prolyl-tRNA 99.6 8E-15 1.7E-19 149.5 17.1 236 184-493 22-264 (264)
34 TIGR00344 alaS alanine--tRNA l 99.6 6.3E-15 1.4E-19 170.9 16.9 181 94-283 493-683 (851)
35 cd00770 SerRS_core Seryl-tRNA 99.6 2.2E-15 4.7E-20 156.2 11.4 162 312-505 126-296 (297)
36 PRK00252 alaS alanyl-tRNA synt 99.6 8.3E-15 1.8E-19 170.5 16.6 179 95-283 487-676 (865)
37 PRK12420 histidyl-tRNA synthet 99.6 3E-14 6.6E-19 154.8 18.9 300 200-563 19-396 (423)
38 TIGR03683 A-tRNA_syn_arch alan 99.6 1.9E-14 4.2E-19 167.3 16.1 181 95-283 533-722 (902)
39 PLN02900 alanyl-tRNA synthetas 99.6 3.3E-14 7.1E-19 165.6 17.1 183 93-283 529-723 (936)
40 PRK13902 alaS alanyl-tRNA synt 99.6 2.8E-14 6E-19 166.0 15.8 179 96-283 530-718 (900)
41 TIGR00414 serS seryl-tRNA synt 99.6 8.1E-15 1.8E-19 158.4 10.1 162 312-505 247-417 (418)
42 cd00779 ProRS_core_prok Prolyl 99.6 9.7E-15 2.1E-19 148.2 9.5 232 184-493 21-255 (255)
43 PLN02972 Histidyl-tRNA synthet 99.5 4.1E-13 8.9E-18 151.9 20.8 225 316-563 416-726 (763)
44 PRK05431 seryl-tRNA synthetase 99.5 3.4E-14 7.3E-19 154.0 11.1 163 312-506 245-416 (425)
45 COG0013 AlaS Alanyl-tRNA synth 99.5 9.6E-14 2.1E-18 157.8 14.1 124 153-283 564-690 (879)
46 KOG2298 Glycyl-tRNA synthetase 99.5 3E-14 6.6E-19 149.1 9.1 94 471-566 456-561 (599)
47 PLN02961 alanine-tRNA ligase 99.5 6.4E-13 1.4E-17 132.3 15.9 186 84-282 3-211 (223)
48 cd00862 ProRS_anticodon_zinc P 99.4 5.7E-13 1.2E-17 130.6 9.3 68 497-564 3-77 (202)
49 PRK00960 seryl-tRNA synthetase 99.4 1.4E-12 3.1E-17 142.7 10.4 158 312-502 330-500 (517)
50 PLN02320 seryl-tRNA synthetase 99.4 3E-12 6.5E-17 139.4 12.0 158 312-505 308-490 (502)
51 COG2872 Predicted metal-depend 99.4 8.6E-12 1.9E-16 124.1 13.6 191 93-299 32-231 (241)
52 cd00858 GlyRS_anticodon GlyRS 99.4 2.1E-12 4.5E-17 116.4 8.4 68 497-565 19-88 (121)
53 cd02426 Pol_gamma_b_Cterm C-te 99.4 1.8E-12 4E-17 117.9 8.1 71 497-567 20-96 (128)
54 PRK14938 Ser-tRNA(Thr) hydrola 99.3 5.1E-12 1.1E-16 132.3 9.9 82 483-564 249-334 (387)
55 PF02824 TGS: TGS domain; Int 99.3 6.2E-12 1.3E-16 99.1 6.6 60 84-144 1-60 (60)
56 PRK12292 hisZ ATP phosphoribos 99.3 1.9E-10 4.2E-15 123.9 19.0 288 199-555 17-378 (391)
57 PF00587 tRNA-synt_2b: tRNA sy 99.2 8.1E-12 1.8E-16 119.3 5.1 76 313-389 79-155 (173)
58 PLN02678 seryl-tRNA synthetase 99.2 4.3E-11 9.4E-16 129.6 11.2 162 312-505 250-423 (448)
59 PF03129 HGTP_anticodon: Antic 99.2 5.9E-11 1.3E-15 101.7 7.3 58 506-563 1-61 (94)
60 cd00861 ProRS_anticodon_short 99.1 9.8E-11 2.1E-15 100.0 7.1 61 504-564 1-64 (94)
61 cd00774 GlyRS-like_core Glycyl 99.1 7.4E-11 1.6E-15 119.8 7.4 107 308-415 97-207 (254)
62 PRK12421 ATP phosphoribosyltra 99.1 1.2E-08 2.6E-13 109.9 22.0 154 184-387 11-166 (392)
63 TIGR00415 serS_MJ seryl-tRNA s 99.1 9.7E-10 2.1E-14 119.2 12.3 157 312-500 330-498 (520)
64 KOG1936 Histidyl-tRNA syntheta 99.0 5.9E-09 1.3E-13 109.1 14.3 237 317-564 150-482 (518)
65 cd00860 ThrRS_anticodon ThrRS 99.0 1.7E-09 3.8E-14 91.5 8.6 61 504-564 1-61 (91)
66 cd00738 HGTP_anticodon HGTP an 98.8 9E-09 2E-13 87.5 8.1 61 504-564 1-64 (94)
67 cd00768 class_II_aaRS-like_cor 98.8 1.7E-08 3.8E-13 98.2 9.3 137 314-486 72-211 (211)
68 PF07973 tRNA_SAD: Threonyl an 98.8 4.5E-09 9.8E-14 77.5 3.6 43 250-299 1-44 (44)
69 cd01667 TGS_ThrRS_N TGS _ThrRS 98.7 4E-08 8.8E-13 76.0 6.7 61 84-145 1-61 (61)
70 KOG0188 Alanyl-tRNA synthetase 98.7 9.2E-08 2E-12 105.6 11.2 132 153-299 568-706 (895)
71 smart00863 tRNA_SAD Threonyl a 98.6 4.9E-08 1.1E-12 71.8 4.1 38 250-287 1-39 (44)
72 cd00859 HisRS_anticodon HisRS 98.4 1.4E-06 3E-11 72.8 7.8 58 506-563 3-60 (91)
73 COG0172 SerS Seryl-tRNA synthe 98.3 2.2E-06 4.7E-11 92.0 8.6 143 314-495 250-403 (429)
74 cd01616 TGS The TGS domain, na 98.3 2.2E-06 4.7E-11 65.7 6.0 59 85-144 2-60 (60)
75 cd00773 HisRS-like_core Class 98.2 3.6E-06 7.9E-11 85.8 7.2 68 315-388 80-148 (261)
76 cd01668 TGS_RelA_SpoT TGS_RelA 98.0 1.1E-05 2.4E-10 62.8 6.2 60 84-144 1-60 (60)
77 KOG2509 Seryl-tRNA synthetase 98.0 1.1E-05 2.5E-10 85.3 7.5 159 314-504 263-431 (455)
78 TIGR00443 hisZ_biosyn_reg ATP 98.0 1.6E-05 3.5E-10 83.3 8.8 68 314-387 84-152 (314)
79 PRK07080 hypothetical protein; 97.9 6.7E-05 1.4E-09 77.3 11.3 150 318-500 153-308 (317)
80 KOG2105 Predicted metal-depend 97.9 5.6E-05 1.2E-09 75.9 10.1 142 129-284 85-234 (415)
81 PRK12295 hisZ ATP phosphoribos 97.6 0.00014 3.1E-09 77.9 7.6 64 315-387 80-145 (373)
82 COG0442 ProS Prolyl-tRNA synth 97.5 0.00025 5.4E-09 78.2 8.4 156 406-564 182-353 (500)
83 PF13393 tRNA-synt_His: Histid 97.1 0.00084 1.8E-08 70.0 6.6 68 314-387 85-154 (311)
84 PRK12293 hisZ ATP phosphoribos 97.1 0.0007 1.5E-08 69.9 5.7 141 184-387 9-150 (281)
85 PRK11092 bifunctional (p)ppGpp 96.6 0.0029 6.3E-08 73.0 6.4 65 82-147 386-450 (702)
86 COG0317 SpoT Guanosine polypho 96.1 0.011 2.4E-07 67.4 7.3 65 82-147 387-451 (701)
87 TIGR02367 PylS pyrrolysyl-tRNA 96.1 0.0079 1.7E-07 65.1 5.6 61 315-383 316-376 (453)
88 COG3705 HisZ ATP phosphoribosy 96.1 0.0048 1E-07 66.1 3.5 107 264-386 48-159 (390)
89 PRK07440 hypothetical protein; 95.9 0.042 9.1E-07 44.6 7.7 60 82-145 3-66 (70)
90 PRK05659 sulfur carrier protei 95.8 0.039 8.5E-07 43.9 6.9 58 84-145 1-62 (66)
91 PRK10872 relA (p)ppGpp synthet 95.8 0.015 3.3E-07 67.3 6.2 65 82-147 404-468 (743)
92 TIGR00691 spoT_relA (p)ppGpp s 95.6 0.02 4.3E-07 66.3 6.6 66 82-148 360-425 (683)
93 COG2104 ThiS Sulfur transfer p 95.6 0.06 1.3E-06 43.5 7.2 59 83-145 2-64 (68)
94 PRK09537 pylS pyrolysyl-tRNA s 95.3 0.027 5.9E-07 61.0 5.7 63 313-383 278-340 (417)
95 PRK08364 sulfur carrier protei 95.0 0.079 1.7E-06 42.9 6.3 59 83-145 4-66 (70)
96 PRK07696 sulfur carrier protei 94.5 0.14 3E-06 41.2 6.5 59 84-145 1-63 (67)
97 cd00565 ThiS ThiaminS ubiquiti 94.4 0.11 2.5E-06 41.2 5.9 57 86-146 2-62 (65)
98 PRK06944 sulfur carrier protei 94.3 0.15 3.2E-06 40.4 6.3 57 84-145 1-61 (65)
99 PRK08053 sulfur carrier protei 94.3 0.18 4E-06 40.2 6.8 58 84-145 1-62 (66)
100 PRK06488 sulfur carrier protei 94.1 0.18 4E-06 40.0 6.5 57 84-145 1-61 (65)
101 PRK06437 hypothetical protein; 93.1 0.33 7.1E-06 39.0 6.3 52 92-146 13-64 (67)
102 PRK06083 sulfur carrier protei 92.9 0.56 1.2E-05 39.5 7.7 61 81-145 16-80 (84)
103 PTZ00326 phenylalanyl-tRNA syn 92.7 0.15 3.3E-06 56.3 5.2 56 316-379 356-411 (494)
104 PF12745 HGTP_anticodon2: Anti 92.2 0.55 1.2E-05 48.4 8.2 61 503-563 4-66 (273)
105 PRK05863 sulfur carrier protei 91.6 0.47 1E-05 37.8 5.5 58 84-145 1-61 (65)
106 TIGR01683 thiS thiamine biosyn 91.4 0.64 1.4E-05 36.8 6.1 53 90-145 4-60 (64)
107 PRK11840 bifunctional sulfur c 88.0 1.2 2.7E-05 46.7 6.6 58 84-145 1-62 (326)
108 COG0173 AspS Aspartyl-tRNA syn 88.0 0.75 1.6E-05 51.1 5.2 77 290-375 182-261 (585)
109 PRK01777 hypothetical protein; 87.9 1.9 4.2E-05 37.2 6.7 57 93-150 20-84 (95)
110 PRK04172 pheS phenylalanyl-tRN 86.2 1.2 2.6E-05 49.8 5.8 61 314-382 347-408 (489)
111 cd01666 TGS_DRG_C TGS_DRG_C: 85.2 1.3 2.8E-05 36.5 4.0 50 93-143 18-74 (75)
112 cd00754 MoaD Ubiquitin domain 82.8 2.6 5.6E-05 34.4 5.0 46 100-145 25-76 (80)
113 cd01669 TGS_Ygr210_C TGS_Ygr21 81.7 3 6.4E-05 34.5 4.8 49 94-144 25-76 (76)
114 PF02597 ThiS: ThiS family; I 79.3 4.3 9.4E-05 32.7 5.1 50 95-145 17-73 (77)
115 PRK12294 hisZ ATP phosphoribos 79.1 3.3 7.1E-05 42.7 5.3 57 316-386 83-141 (272)
116 PF14453 ThiS-like: ThiS-like 77.5 8 0.00017 30.2 5.7 54 85-144 2-55 (57)
117 PLN02799 Molybdopterin synthas 76.9 4.7 0.0001 33.3 4.7 51 94-145 23-78 (82)
118 cd00777 AspRS_core Asp tRNA sy 75.4 3.2 7E-05 42.9 4.1 44 319-366 71-115 (280)
119 TIGR00559 pdxJ pyridoxine 5'-p 73.6 17 0.00036 36.6 8.4 74 471-558 63-148 (237)
120 PF01409 tRNA-synt_2d: tRNA sy 73.6 6.9 0.00015 39.7 5.8 65 312-384 97-162 (247)
121 PRK09350 poxB regulator PoxA; 71.8 2.9 6.3E-05 43.8 2.7 42 319-364 80-122 (306)
122 TIGR00470 sepS O-phosphoseryl- 71.1 7.6 0.00017 42.8 5.7 65 314-385 204-269 (533)
123 cd00003 PNPsynthase Pyridoxine 70.4 20 0.00043 36.1 8.0 74 471-558 63-148 (234)
124 PF03740 PdxJ: Pyridoxal phosp 69.9 27 0.00058 35.3 8.9 74 471-558 64-149 (239)
125 cd00669 Asp_Lys_Asn_RS_core As 69.3 7 0.00015 40.2 4.8 41 319-363 71-112 (269)
126 PRK05265 pyridoxine 5'-phospha 69.3 22 0.00047 35.9 8.0 73 472-558 67-151 (239)
127 TIGR00459 aspS_bact aspartyl-t 66.7 6.4 0.00014 44.9 4.2 44 319-366 208-252 (583)
128 COG1854 LuxS LuxS protein invo 65.3 25 0.00054 32.9 7.0 56 155-213 53-111 (161)
129 TIGR00462 genX lysyl-tRNA synt 63.3 4.1 9E-05 42.6 1.8 51 318-375 74-125 (304)
130 TIGR00458 aspS_arch aspartyl-t 63.1 9.1 0.0002 42.1 4.5 46 318-366 200-246 (428)
131 PLN02903 aminoacyl-tRNA ligase 62.3 7.6 0.00016 44.8 3.8 45 318-366 273-318 (652)
132 cd00776 AsxRS_core Asx tRNA sy 62.0 11 0.00024 39.8 4.7 46 318-366 90-137 (322)
133 PRK00476 aspS aspartyl-tRNA sy 59.8 9.6 0.00021 43.6 4.1 45 318-366 210-255 (588)
134 PLN02853 Probable phenylalanyl 59.6 16 0.00035 40.6 5.6 56 316-379 341-396 (492)
135 PF00152 tRNA-synt_2: tRNA syn 59.3 14 0.00031 39.0 5.0 49 318-370 94-144 (335)
136 TIGR01682 moaD molybdopterin c 58.2 24 0.00053 28.9 5.3 45 100-144 26-75 (80)
137 PRK12820 bifunctional aspartyl 57.1 12 0.00025 43.7 4.1 45 318-366 225-270 (706)
138 cd00775 LysRS_core Lys_tRNA sy 56.8 15 0.00033 38.8 4.7 45 318-366 77-122 (329)
139 TIGR00457 asnS asparaginyl-tRN 53.5 16 0.00035 40.5 4.4 46 318-366 211-257 (453)
140 PRK00484 lysS lysyl-tRNA synth 51.7 20 0.00044 40.1 4.9 45 318-366 241-286 (491)
141 PRK06462 asparagine synthetase 51.3 19 0.00042 38.2 4.4 48 318-366 103-151 (335)
142 PRK11130 moaD molybdopterin sy 51.0 71 0.0015 26.3 6.9 45 100-144 25-76 (81)
143 PRK05159 aspC aspartyl-tRNA sy 50.1 22 0.00047 39.2 4.8 46 318-366 203-250 (437)
144 PRK00488 pheS phenylalanyl-tRN 49.8 32 0.0007 36.6 5.7 63 314-384 182-245 (339)
145 KOG2411 Aspartyl-tRNA syntheta 49.4 16 0.00036 40.3 3.5 62 296-363 226-290 (628)
146 PLN02850 aspartate-tRNA ligase 48.3 17 0.00038 41.0 3.7 44 319-366 293-339 (530)
147 PLN03194 putative disease resi 48.2 74 0.0016 31.0 7.4 51 502-552 24-79 (187)
148 cd04938 TGS_Obg-like TGS_Obg-l 47.6 32 0.00069 28.3 4.2 47 96-143 28-75 (76)
149 PTZ00385 lysyl-tRNA synthetase 46.2 25 0.00054 40.7 4.5 44 318-365 302-346 (659)
150 PLN02221 asparaginyl-tRNA synt 45.3 32 0.00068 39.3 5.1 40 318-360 327-367 (572)
151 PTZ00425 asparagine-tRNA ligas 45.3 26 0.00056 40.1 4.4 41 318-361 344-385 (586)
152 PRK00103 rRNA large subunit me 44.3 1.6E+02 0.0034 27.8 8.9 79 484-563 13-106 (157)
153 PRK12445 lysyl-tRNA synthetase 43.1 29 0.00063 39.0 4.4 45 318-366 253-298 (505)
154 PTZ00417 lysine-tRNA ligase; P 41.8 29 0.00062 39.8 4.1 44 319-366 323-367 (585)
155 PTZ00305 NADH:ubiquinone oxido 41.7 1.2E+02 0.0026 31.6 8.3 74 84-162 69-159 (297)
156 PRK03932 asnC asparaginyl-tRNA 41.0 38 0.00082 37.5 4.9 45 318-366 208-254 (450)
157 TIGR00499 lysS_bact lysyl-tRNA 40.4 28 0.0006 39.1 3.7 44 319-366 242-286 (496)
158 COG0854 PdxJ Pyridoxal phospha 40.3 73 0.0016 31.8 6.1 57 502-560 83-151 (243)
159 PTZ00401 aspartyl-tRNA synthet 39.4 28 0.00061 39.6 3.6 46 319-367 281-328 (550)
160 PLN02502 lysyl-tRNA synthetase 39.1 28 0.00061 39.6 3.6 45 318-366 298-343 (553)
161 PRK02260 S-ribosylhomocysteina 39.0 1.1E+02 0.0024 28.9 6.9 55 155-213 53-111 (158)
162 PF02664 LuxS: S-Ribosylhomocy 38.0 1.4E+02 0.0029 28.3 7.2 57 153-213 50-111 (157)
163 PLN02532 asparagine-tRNA synth 37.9 42 0.00091 38.7 4.7 43 318-363 390-433 (633)
164 TIGR01687 moaD_arch MoaD famil 37.6 58 0.0013 27.0 4.5 45 100-144 24-83 (88)
165 PF01520 Amidase_3: N-acetylmu 35.3 1.2E+02 0.0026 28.3 6.8 45 517-561 27-74 (175)
166 COG0017 AsnS Aspartyl/asparagi 35.1 50 0.0011 36.3 4.5 34 319-355 201-234 (435)
167 PLN02603 asparaginyl-tRNA synt 33.1 57 0.0012 37.2 4.7 39 319-360 323-362 (565)
168 PF14451 Ub-Mut7C: Mut7-C ubiq 32.6 87 0.0019 26.2 4.6 44 100-144 32-75 (81)
169 COG2185 Sbm Methylmalonyl-CoA 31.7 2E+02 0.0043 26.8 7.2 52 504-555 12-64 (143)
170 cd04724 Tryptophan_synthase_al 31.2 2.8E+02 0.006 27.9 9.0 69 482-562 92-160 (242)
171 PF02590 SPOUT_MTase: Predicte 30.3 45 0.00098 31.4 2.9 78 484-562 13-105 (155)
172 PRK02983 lysS lysyl-tRNA synth 29.0 49 0.0011 40.8 3.6 44 319-366 840-884 (1094)
173 PF13510 Fer2_4: 2Fe-2S iron-s 29.0 53 0.0012 27.2 2.8 29 82-112 2-30 (82)
174 TIGR00262 trpA tryptophan synt 28.1 4.3E+02 0.0094 26.8 9.8 69 482-562 103-171 (256)
175 PRK00301 aat leucyl/phenylalan 27.0 67 0.0015 32.3 3.5 52 482-538 31-90 (233)
176 TIGR00468 pheS phenylalanyl-tR 25.7 1.1E+02 0.0024 31.9 5.0 56 316-379 149-204 (294)
177 COG0016 PheS Phenylalanyl-tRNA 25.2 1.1E+02 0.0023 32.6 4.8 60 317-384 192-252 (335)
178 TIGR00640 acid_CoA_mut_C methy 24.9 4E+02 0.0087 24.2 8.0 55 506-560 4-59 (132)
179 CHL00200 trpA tryptophan synth 24.4 4.1E+02 0.009 27.2 8.9 69 482-562 107-175 (263)
180 KOG0554 Asparaginyl-tRNA synth 24.1 46 0.00099 36.0 1.8 60 318-380 206-268 (446)
181 cd02696 MurNAc-LAA N-acetylmur 24.1 2.5E+02 0.0054 26.1 6.8 46 516-561 27-75 (172)
182 PRK07569 bidirectional hydroge 23.8 3.4E+02 0.0074 27.0 8.1 55 82-138 2-72 (234)
183 cd04882 ACT_Bt0572_2 C-termina 23.4 2.8E+02 0.006 20.7 5.9 50 480-534 10-64 (65)
184 PRK07860 NADH dehydrogenase su 22.6 2.9E+02 0.0063 33.0 8.4 79 82-163 3-97 (797)
185 COG2269 Truncated, possibly in 22.4 62 0.0013 33.6 2.3 47 318-368 90-137 (322)
186 TIGR00106 uncharacterized prot 22.3 1.5E+02 0.0032 25.6 4.4 19 518-536 19-37 (97)
187 PF08357 SEFIR: SEFIR domain; 22.0 2.1E+02 0.0045 26.0 5.7 34 506-539 2-38 (150)
188 PRK09130 NADH dehydrogenase su 22.0 2.6E+02 0.0057 32.8 7.7 77 83-164 1-94 (687)
189 PRK09129 NADH dehydrogenase su 22.0 2.7E+02 0.0058 33.0 8.0 75 83-162 1-91 (776)
190 PF10752 DUF2533: Protein of u 21.9 1.5E+02 0.0032 24.8 4.0 37 194-230 42-80 (84)
191 TIGR00246 tRNA_RlmH_YbeA rRNA 20.9 4.2E+02 0.0091 24.8 7.4 78 484-563 12-103 (153)
192 PRK13718 conjugal transfer pro 20.4 43 0.00093 27.7 0.6 13 564-576 20-32 (84)
193 smart00255 TIR Toll - interleu 20.3 3E+02 0.0064 24.3 6.2 20 519-538 18-37 (140)
194 COG4635 HemG Flavodoxin [Energ 20.2 1.3E+02 0.0028 28.6 3.8 25 515-539 13-37 (175)
No 1
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=4.6e-115 Score=987.80 Aligned_cols=521 Identities=76% Similarity=1.242 Sum_probs=500.7
Q ss_pred ccccCCCCCCCChhhhhcchhhHHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccce
Q 008152 39 ICAMPSPNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANA 118 (576)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~~~~~~~~~~~~~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~ 118 (576)
..+..+....++|+|++ +|++||++++++|++++++++.++|+|++|||+++++++|+|||+|||+++++++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~----~r~~~f~~~~~~~~~~~~~~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~ 86 (686)
T PLN02908 11 AAPSHPSDEEYLSAVIK----KRIELFEKIQARQLARLESAGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSA 86 (686)
T ss_pred hcccCCCCcCCCchhHH----HHHHHHHHHHHHHHHHhhhccCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhc
Confidence 34566777889999999 99999999999999999988888999999999999999999999999999999999999
Q ss_pred EEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCCC
Q 008152 119 LISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLN 198 (576)
Q Consensus 119 v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t 198 (576)
|+|+|||++|||++||++||+|+|++|+|++|+++||||++|||++|++++||+++++||+++.++|||||+.+++.++|
T Consensus 87 v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t 166 (686)
T PLN02908 87 LIAQVDGVLWDMTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLN 166 (686)
T ss_pred EEEEECCEEeecCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999755899999986556799
Q ss_pred HhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccE
Q 008152 199 PDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGF 276 (576)
Q Consensus 199 ~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f 276 (576)
++|+++|+++|+++| |+||++.+||++||++||+++++|++|++++++++.|++|+||+|+|+|+||||||||+||.|
T Consensus 167 ~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~~D~c~Gphv~sTg~ik~f 246 (686)
T PLN02908 167 EEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCGPLVDLCRGPHIPNTSFVKAF 246 (686)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCEEEecCCCCCCCCCcccee
Confidence 999999999999999 999999999999999999999999999998865678999999999999999999999999999
Q ss_pred EEEeecceeecCCCCCCCceeEeccccCChhhhhh---------------------------------------------
Q 008152 277 GCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH--------------------------------------------- 311 (576)
Q Consensus 277 ~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~--------------------------------------------- 311 (576)
+|+++++|||+++.+++++|||||++||++++|++
T Consensus 247 ~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~ 326 (686)
T PLN02908 247 ACLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNK 326 (686)
T ss_pred EEEEecceEEcCCCcchhhEEEeeeccCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHH
Confidence 99999999999999999999999999999999966
Q ss_pred ----------------------------------------------------------------------hhhcCCeeee
Q 008152 312 ----------------------------------------------------------------------AFAELPLRLA 321 (576)
Q Consensus 312 ----------------------------------------------------------------------s~relpl~l~ 321 (576)
||+++|++++
T Consensus 327 l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~ 406 (686)
T PLN02908 327 LMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLA 406 (686)
T ss_pred HHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHE
Confidence 7889999999
Q ss_pred eeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCccCCChHHHHHH
Q 008152 322 DFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKA 401 (576)
Q Consensus 322 ~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~~~G~~~~~~~a 401 (576)
++|.+||+|.+|.+.||+|+|+|+|+|+|+||+++|+.+|+.++++++.++|+.||++|++.+|+||++++|+.+.|+.|
T Consensus 407 ~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~a 486 (686)
T PLN02908 407 DFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKA 486 (686)
T ss_pred EeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCc-ccccEEEEeccc
Q 008152 402 EAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAK-TERPVMIHRAIL 480 (576)
Q Consensus 402 ~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~-~~~P~ii~~a~~ 480 (576)
+..|.++|+++|..|++++|+++|||||||+.+.|+++|.|||+|+|+||++|.+||+.|.+++ +. ..+|++||+|++
T Consensus 487 e~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~-~~~~~~pv~ihrai~ 565 (686)
T PLN02908 487 EAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAED-EAKIERPVMIHRAIL 565 (686)
T ss_pred HHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCHhhcCCEEECCC-CCcCCCCEEEEeCce
Confidence 9999999999999999999999999999999999999999999999999999999999998866 44 579999999999
Q ss_pred ccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEE
Q 008152 481 GSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYF 560 (576)
Q Consensus 481 GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iI 560 (576)
||+||++++|.|+++|+||+|++|.||+|+|++++..++|.+|++.||++|++|++|.++.+++||+++|++.|+||++|
T Consensus 566 GsiERli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~~vii 645 (686)
T PLN02908 566 GSVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILV 645 (686)
T ss_pred EhHHHHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecce
Q 008152 561 YCPM 564 (576)
Q Consensus 561 iGp~ 564 (576)
+|+-
T Consensus 646 vG~~ 649 (686)
T PLN02908 646 VGEA 649 (686)
T ss_pred ECch
Confidence 9963
No 2
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-98 Score=848.98 Aligned_cols=478 Identities=44% Similarity=0.813 Sum_probs=458.5
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHH
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHI 161 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahl 161 (576)
.+|+|+++||+++++++ |||++|||+.+++.+...+|+|+|||++|||+++++.||+|+|+++++++|.++||||++||
T Consensus 4 ~mi~i~~~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~~~g~~iy~hS~~hl 82 (639)
T PRK12444 4 QMIEIKFPDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDSNEGVEIARHSAAHI 82 (639)
T ss_pred CCeEEEeCCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCCChHHHHHHHHHHHHH
Confidence 56999999999999998 89999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhcc--Ccc
Q 008152 162 LGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNF 236 (576)
Q Consensus 162 L~~A~~~~fg-~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~--~~~ 236 (576)
|+.|++++|+ ..+.++|+++ +|||||+.. +.++|++|+.+||++|+++| |+||++.+++++||+++|++ +.+
T Consensus 83 L~~A~~~~~~~~~~~i~~~~~--~g~y~d~~~-~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~ 159 (639)
T PRK12444 83 LAQAVKRLYGDVNLGVGPVIE--NGFYYDMDL-PSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRL 159 (639)
T ss_pred HHHHHHHHcCCcEEEeCCcCC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCch
Confidence 9999999996 4689999998 999999986 56799999999999999999 99999999999999999997 457
Q ss_pred hhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhh-----
Q 008152 237 KVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH----- 311 (576)
Q Consensus 237 K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~----- 311 (576)
|++|++..+..+.|++|+||+++|+|+||||||||+|+.|+|+++++|||++++++..+|||||++||++++|.+
T Consensus 160 K~~ll~~~~~~~~v~iy~~~~~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~~~~l~~~~~~~ 239 (639)
T PRK12444 160 KLELLEAIPSGESITLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFV 239 (639)
T ss_pred HHHHHhcCCCCCeEEEEEECCEEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEecCCHHHHHHHHHHH
Confidence 999999876556799999999999999999999999999999999999999999999999999999999999955
Q ss_pred --------------------------------------------------------------------------------
Q 008152 312 -------------------------------------------------------------------------------- 311 (576)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (576)
T Consensus 240 ~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~e 319 (639)
T PRK12444 240 EEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDN 319 (639)
T ss_pred HHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhh
Confidence
Q ss_pred ------------------------------hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHH
Q 008152 312 ------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDE 361 (576)
Q Consensus 312 ------------------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e 361 (576)
||+++|++++++|.+||+|++|.+.||+|+|||+|+|+|+||+++++.+|
T Consensus 320 my~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e 399 (639)
T PRK12444 320 MYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDE 399 (639)
T ss_pred cCeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHH
Confidence 78899999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCc
Q 008152 362 VRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRK 441 (576)
Q Consensus 362 ~~~~l~~~~~i~~~lG~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~ 441 (576)
+.++++++.++|+.||+++.+.+++||++++|++++|+.++..|.++|+..|++|.+|+|+|+||||++|+.+.|..|+.
T Consensus 400 ~~~~~~~~~~i~~~lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~ 479 (639)
T PRK12444 400 IKSVMAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRS 479 (639)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC-ChHHHH
Q 008152 442 FQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE-KSQPYA 520 (576)
Q Consensus 442 ~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~-~~~~~a 520 (576)
|+|+|.|+||++|.+||++|++.+ |++.+|+|+|++++||+||++++|+|+++|.||+|++|.||+|+|+++ +..++|
T Consensus 480 ~~~~t~~~d~~~~~~f~l~~~~~~-g~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~a 558 (639)
T PRK12444 480 HQCGTIQLDFQMPEKFDLNYIDEK-NEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQYA 558 (639)
T ss_pred hcccceeeecccccccceEEECCC-CCccccEEEEECCCCCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHHH
Confidence 999999999999999999999887 788899999999999999999999999889999999999999999998 689999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 521 LQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 521 ~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
.+|++.||++|++|++|.++.++|||+++|++.|+||++|||+-
T Consensus 559 ~~la~~LR~~Gi~veid~~~~sl~kq~k~A~k~g~~~~iiiG~~ 602 (639)
T PRK12444 559 DEVADKLAQAGIRVERDERDEKLGYKIREAQMQKIPYVLVIGDK 602 (639)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcch
Confidence 99999999999999999999999999999999999999999974
No 3
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-101 Score=794.15 Aligned_cols=404 Identities=63% Similarity=1.110 Sum_probs=387.3
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHHHH
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILG 163 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahlL~ 163 (576)
+.| ||||+++++.+|+|||+|||.+ |+++++.+++|+|||++|||++|+++|| +|+++|+|++|+.+||||++|+||
T Consensus 2 ~~~-Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~k~vfwhssahvlg 78 (560)
T KOG1637|consen 2 IIV-LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEGKDVFWHSSAHVLG 78 (560)
T ss_pred eee-cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCcccceeeeehhhhHhh
Confidence 445 9999999999999999999999 9999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhCCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHhcCCEEEEEeCHHHHHHhhccCcchhhhccc
Q 008152 164 QAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND 243 (576)
Q Consensus 164 ~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~ 243 (576)
+|+++.||++||+||+++ +|||||+ + +. ++.+|+..||.
T Consensus 79 ~a~e~~~g~~lc~Gpp~~--~gf~yd~-~-~~-i~~~d~~~~e~------------------------------------ 117 (560)
T KOG1637|consen 79 EALEQEYGAHLCIGPPIE--EGFYYDM-L-DE-ISSNDFPSIEA------------------------------------ 117 (560)
T ss_pred HHHHHhcCeeEeeCCCCc--Cceehhh-h-cc-ccccccccccc------------------------------------
Confidence 999999999999999999 9999999 5 32 77776655442
Q ss_pred CCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhh------------
Q 008152 244 LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------------ 311 (576)
Q Consensus 244 ~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~------------ 311 (576)
|||++||.||+|+++++++.||++. +||++++|++
T Consensus 118 ---------------------phi~~tg~ika~k~~~nss~yw~~~------------sfp~~k~~k~~~~~~~Ea~~rd 164 (560)
T KOG1637|consen 118 ---------------------PHIRHTGKIKAFKILKNSSAYWEGD------------SFPDPKQLKEWEKFQEEAKKRD 164 (560)
T ss_pred ---------------------ccccccceeeeeeeeccchhhhccc------------cCCCHHHHHHHHhhchhhhhhh
Confidence 9999999999999999999999986 7888888755
Q ss_pred --------------------------------------------------------------------------------
Q 008152 312 -------------------------------------------------------------------------------- 311 (576)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (576)
T Consensus 165 HRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~e 244 (560)
T KOG1637|consen 165 HRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVE 244 (560)
T ss_pred hhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeec
Confidence
Q ss_pred -----------------------hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHH
Q 008152 312 -----------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEF 368 (576)
Q Consensus 312 -----------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~ 368 (576)
|||++|+|++++|.+||+|.||.++||+|+|+|+|+|+||||+++|+.+||..+++|
T Consensus 245 ke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~f 324 (560)
T KOG1637|consen 245 KEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDF 324 (560)
T ss_pred hhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceee
Q 008152 369 IDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ 448 (576)
Q Consensus 369 ~~~i~~~lG~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq 448 (576)
+..+|..||++|++.+||||++++|+.++|++|+..|+++|+.+|.+|.+|+|||||||||||+.+.|++||.|||+|+|
T Consensus 325 l~~vY~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQ 404 (560)
T KOG1637|consen 325 LDYVYGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQ 404 (560)
T ss_pred HHHHHHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 008152 449 LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIY 528 (576)
Q Consensus 449 ld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr 528 (576)
|||++|.||||+|.+++ |..++|+|||++++||+|||+|+|+|+++|+||+|+||+|+.||||++....||.+|.++|+
T Consensus 405 LDFqLP~rFdL~y~~~~-g~~erPVmIHRAIlGSvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~ql~ 483 (560)
T KOG1637|consen 405 LDFQLPIRFDLEYETED-GDLERPVMIHRAILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLE 483 (560)
T ss_pred ecccChhhcCceeeccc-ccccchhhHHHHHhhhHHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHHHH
Confidence 99999999999999887 77899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecceE
Q 008152 529 RAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPML 565 (576)
Q Consensus 529 ~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~~ 565 (576)
++|+.+++|.++.+++||+|+|++.+|+|+++||-.-
T Consensus 484 ~a~f~~Dld~t~~tl~kkir~Aqla~yn~i~VVGdkE 520 (560)
T KOG1637|consen 484 EAGFYVDLDPTDSTLRKKIRNAQLAHYNFIFVVGDKE 520 (560)
T ss_pred hhhceeecCCccchHHHHHhhhhhcceeEEEEEchhh
Confidence 9999999999999999999999999999999999643
No 4
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-90 Score=785.36 Aligned_cols=477 Identities=48% Similarity=0.851 Sum_probs=454.3
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHHH
Q 008152 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHIL 162 (576)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahlL 162 (576)
+|+|+++||+.++++. ||||.|+|+.++......+|+|+|||+++||++++++||+|+|+++++++|+++||||++|||
T Consensus 1 ~~~i~~~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll 79 (638)
T PRK00413 1 MIKITLPDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLL 79 (638)
T ss_pred CcEEEeCCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccchhhHHHHhhhHHHHH
Confidence 3889999999999998 999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhcc--Ccch
Q 008152 163 GQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFK 237 (576)
Q Consensus 163 ~~A~~~~f-g~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~--~~~K 237 (576)
+.|++++| ++.+.++|+++ +|||||+.. +.++|++|+++||++|+++| |+||++.+++++||.++|++ +.+|
T Consensus 80 ~~A~~~~~~~~~~~~~~~~~--~g~y~d~~~-~~~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k 156 (638)
T PRK00413 80 AQAVKRLYPDAKLTIGPVIE--NGFYYDFDR-ERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYK 156 (638)
T ss_pred HHHHHHHcCCceEEECCccC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccH
Confidence 99999999 57899999998 999999986 56799999999999999999 99999999999999999998 4579
Q ss_pred hhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhh------
Q 008152 238 VEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------ 311 (576)
Q Consensus 238 ~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~------ 311 (576)
++|+++++.+..|++|+||+|+|+|+||||||||+|+.|+|.++++|||+++.+++.++||||++||++++|.+
T Consensus 157 ~~ll~~~~~~~~v~iy~~~~~~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~ 236 (638)
T PRK00413 157 VELIEEIPEDEEISLYRQGEFVDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLE 236 (638)
T ss_pred HHHhhcCCCCCeEEEEEECCEEEECCCCCCCcccCCceeEEEEEcceEEcCCCcchheEEEEeeecCCHHHHHHHHHHHH
Confidence 99999876555899999999999999999999999999999999999999999999999999999999998855
Q ss_pred --------------------------------------------------------------------------------
Q 008152 312 -------------------------------------------------------------------------------- 311 (576)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (576)
T Consensus 237 e~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~m 316 (638)
T PRK00413 237 EAKKRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENM 316 (638)
T ss_pred HhccccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcc
Confidence
Q ss_pred ------------------------------hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHH
Q 008152 312 ------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDE 361 (576)
Q Consensus 312 ------------------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e 361 (576)
+|+++|+|++++|.+||+|+++.+.|+.|+|||+|+|+|+||+++++.+|
T Consensus 317 y~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e 396 (638)
T PRK00413 317 FPTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEE 396 (638)
T ss_pred ceeecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHH
Confidence 46788999999999999999988899999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhCCe-EEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccC
Q 008152 362 VRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKR 440 (576)
Q Consensus 362 ~~~~l~~~~~i~~~lG~~-~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr 440 (576)
++++++++.++|+.||++ +.+.+|+||.+++|+++.|+++++.|+++|+..|++++.++++++||||++++.+.|++|+
T Consensus 397 ~~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (638)
T PRK00413 397 VKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGR 476 (638)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCC
Confidence 999999999999999996 9999999998999999999999999999999999999999999999999999999999999
Q ss_pred ceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHH
Q 008152 441 KFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYA 520 (576)
Q Consensus 441 ~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a 520 (576)
.|+++|+|+||+++.+||+.|++.+ |+..+|+|||++++||+||++++|.|+++|.||+|++|.||+|+|++++..++|
T Consensus 477 ~~~l~~~~~d~~~~~~~dl~Yt~~~-~~~~~p~~i~~~~~g~~eRli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a 555 (638)
T PRK00413 477 EWQCGTIQLDFNLPERFDLTYVGED-GEKHRPVMIHRAILGSMERFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYA 555 (638)
T ss_pred eEEeccEeecccChhhcCCEEECCC-CCccCcEEEEecceehHHHHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHH
Confidence 9999999999999999999998876 667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 521 LQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 521 ~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
.+|++.||++|++|++|+++.++|||+++|++.|+||++|+|+-
T Consensus 556 ~~i~~~Lr~~gi~v~~d~~~~~l~kki~~A~~~g~~~~iiiG~~ 599 (638)
T PRK00413 556 KEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVPYMLVVGDK 599 (638)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHhHHHHHhhccCCCEEEEEcch
Confidence 99999999999999999999999999999999999999999974
No 5
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-91 Score=761.16 Aligned_cols=429 Identities=47% Similarity=0.800 Sum_probs=410.3
Q ss_pred eEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCC
Q 008152 118 ALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGL 197 (576)
Q Consensus 118 ~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~ 197 (576)
++++++|| .||+.. ..++..++ +|..+.|||+||||+.|++++|.. +++||.++ +|||||++. +.++
T Consensus 2 ~~~~~~~~-~~~~~~-------~~~~~~~~-~~~~~~rhs~ah~l~~av~~l~p~-~~~gp~ie--~gfyyd~~~-~~~~ 68 (589)
T COG0441 2 ALAIHVDG-ELDLKD-------EIITAEDE-EGLEIIRHSCAHVLAQAVKRLYPD-VTIGPVIE--EGFYYDFDV-KEPI 68 (589)
T ss_pred ceEEEccc-ceeccc-------cccCccCc-cchhhhhhHHHHHHHHHHHHhCCC-ccccCccc--ceeEEeecc-CCCC
Confidence 57889999 999887 33344455 999999999999999999999966 99999999 999999987 5569
Q ss_pred CHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCccc
Q 008152 198 NPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG 275 (576)
Q Consensus 198 t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~ 275 (576)
|++|+.+||++|++++ ++||++..+|+++|++.|+ +||+.+|+.++ ..+++|+.|+|.|+|.|||+||||.| +
T Consensus 69 ~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~--~yK~~~i~~~~--~~~s~y~~~~~~dlc~gph~~~t~~i-~ 143 (589)
T COG0441 69 TPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPSTGKI-A 143 (589)
T ss_pred CHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHhh--hhHHHHHhcCC--CCceeEecCccccccCCCCCCccceE-E
Confidence 9999999999999999 9999999999999999999 89999999985 78999999999999999999999999 9
Q ss_pred EEEEeecceeecCCCCCCCceeEeccccCChhhhhh--------------------------------------------
Q 008152 276 FGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH-------------------------------------------- 311 (576)
Q Consensus 276 f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~-------------------------------------------- 311 (576)
|++++.+++||+++++++++||+||++|++++.|++
T Consensus 144 fkl~~~~~ayw~g~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir 223 (589)
T COG0441 144 FKLLKLAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIR 223 (589)
T ss_pred EEEEEecchhhccCCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHH
Confidence 999999999999999999999999999999999955
Q ss_pred ------------------------------------------------------------------------hhhcCCee
Q 008152 312 ------------------------------------------------------------------------AFAELPLR 319 (576)
Q Consensus 312 ------------------------------------------------------------------------s~relpl~ 319 (576)
|||++|++
T Consensus 224 ~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r 303 (589)
T COG0441 224 NLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLR 303 (589)
T ss_pred HHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchh
Confidence 89999999
Q ss_pred eeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCccCCChHHH
Q 008152 320 LADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATW 398 (576)
Q Consensus 320 l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~~~~G~~~~~ 398 (576)
++++|.+||+|.+|.+.||+|+|+|+|+|+||||+++|+.+|+.++++++..+|+.||++ |++.+|+|| +++|+++.|
T Consensus 304 ~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~-k~ig~d~~W 382 (589)
T COG0441 304 LAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KFIGSDEMW 382 (589)
T ss_pred hhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCC-cccCChhhh
Confidence 999999999999999999999999999999999999999999999999999999999998 999999999 999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEec
Q 008152 399 EKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRA 478 (576)
Q Consensus 399 ~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a 478 (576)
+++++.|.++|+..+++|..+||+|||||||+|+.+.|++||.|||+|+|+||++|.||+++|++.+ |..++|+||||+
T Consensus 383 ~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d-~~~~~PvmiHra 461 (589)
T COG0441 383 DKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDED-GEKKRPVIIHRA 461 (589)
T ss_pred HHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCC-CCccCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 788999999999
Q ss_pred ccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceE
Q 008152 479 ILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 479 ~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~ 558 (576)
++|++||++++|+||++|.||.||||.||+|+|++++..+||.++++.|+++|+||++|+++.++|+|||+|+..++||+
T Consensus 462 i~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kipyi 541 (589)
T COG0441 462 ILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIPYV 541 (589)
T ss_pred cchhHHHHHHHHHHhccCCCcccCCccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecceEE
Q 008152 559 YFYCPMLL 566 (576)
Q Consensus 559 iIiGp~~~ 566 (576)
+|+|-.-+
T Consensus 542 iVvG~kE~ 549 (589)
T COG0441 542 IVVGDKEV 549 (589)
T ss_pred EEEchhhh
Confidence 99886543
No 6
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=2.1e-86 Score=744.42 Aligned_cols=421 Identities=41% Similarity=0.754 Sum_probs=402.9
Q ss_pred CCcEEEeecCChhhhHHHHHHHHHHHHHHHHHHh-CCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--
Q 008152 137 DCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA-- 213 (576)
Q Consensus 137 d~~ve~l~~~~~eG~~vy~hS~ahlL~~A~~~~f-g~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-- 213 (576)
..+|++++.++.+|..++|||++|||+.|++++| +..+.+||+++ +||||||.. .++|++|+++||++|+++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~--~g~y~D~~~--~~lt~edl~~IEk~m~~iI~~ 104 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIE--NGFYYDFDM--EPLTDKDLKRIKKEMDRIISR 104 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccC--CCEEEEecC--CCCCHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999 57899999999 999999975 4799999999999999999
Q ss_pred cCCEEEEEeCHHHHHHhhcc--CcchhhhcccCCCCCcEEEEEeCC-eecccCCCCCCCCCCc--ccEEEEeecceeecC
Q 008152 214 KQPFERIEVTRDQALEMFSD--NNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHIPNTSFV--KGFGCLKASSAYWRG 288 (576)
Q Consensus 214 ~~pi~r~~vs~eeA~~lF~~--~~~K~~Ll~~~~~~~~v~vy~~g~-~~D~c~Gphvp~Tg~I--k~f~l~~~~~g~~L~ 288 (576)
|+||++.+++++||+++|.. +++|.+|+++. +.+.|++|+||| ++|+|+||||||||+| ++|+|++.++.||++
T Consensus 105 n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~-~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg 183 (614)
T PLN02837 105 NLPLVREEVSREEAQKRIMAINEPYKLEILEGI-KEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELESVAGAYWRG 183 (614)
T ss_pred CCCEEEEEecHHHHHHHHHHcCCchhHHHhccC-CCCeEEEEEECCeEEEecCCCCcccccccccceEEEEEeehhhhcc
Confidence 99999999999999999985 46799999876 356799999997 8999999999999999 899999999999999
Q ss_pred CCCCCCceeEeccccCChhhhhh---------------------------------------------------------
Q 008152 289 NKDRESLQRVYGISYPDKKRLKH--------------------------------------------------------- 311 (576)
Q Consensus 289 ~p~~~~lqRiyg~~fp~~~~L~~--------------------------------------------------------- 311 (576)
+.++..+|||||++||++++|++
T Consensus 184 ~~~~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~ 263 (614)
T PLN02837 184 DEKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFE 263 (614)
T ss_pred cccCcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999966
Q ss_pred ------------------------------------------------------------hhhcCCeeeeeeccceeccc
Q 008152 312 ------------------------------------------------------------AFAELPLRLADFGVLHRNEA 331 (576)
Q Consensus 312 ------------------------------------------------------------s~relpl~l~~vg~l~R~e~ 331 (576)
||++||++++++|.+||+|.
T Consensus 264 ~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~ 343 (614)
T PLN02837 264 HGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYEL 343 (614)
T ss_pred CCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCC
Confidence 89999999999999999999
Q ss_pred cCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCccCCChHHHHHHHHHHHHHHH
Q 008152 332 SGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALN 410 (576)
Q Consensus 332 ~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~ 410 (576)
+|.+.||+|+|+|+|+|+|+||+++|+.+|+.++++++.++|+.||++ +.+.++++|++++|+++.|++++..|+++|+
T Consensus 344 ~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~ 423 (614)
T PLN02837 344 SGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALD 423 (614)
T ss_pred CCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHH
Confidence 998899999999999999999999999999999999999999999999 8899999999999999999999999999999
Q ss_pred HcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHH
Q 008152 411 EFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAIL 490 (576)
Q Consensus 411 ~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L 490 (576)
..|+.|..++|+|||||||+|+.+.|++||.|||+|+||||++|.+||++|.+++ |..++|+|||++++||+||++++|
T Consensus 424 ~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~~~f~l~y~~~d-~~~~~pv~ih~~~~G~~eRlia~L 502 (614)
T PLN02837 424 DKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSN-SEKKRPIMIHRAILGSLERFFGVL 502 (614)
T ss_pred HcCCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecchhhcCcEEECCC-CCccCCEEEEcCCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888 778899999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 491 ~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
+|+++|.||+|+||.||+|+|++++..++|.+|+++||++|++|++| .+.++|+|+++|++.|+||++|||+-
T Consensus 503 ie~~~g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev~-~~~slgkkir~A~~~gip~~IiIG~~ 575 (614)
T PLN02837 503 IEHYAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVC-HGERLPKLIRNAETQKIPLMAVVGPK 575 (614)
T ss_pred HHHcCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEe-CCCCHHHHHHHHHHcCCCEEEEEcch
Confidence 99999999999999999999999999999999999999999999995 57899999999999999999999974
No 7
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-82 Score=712.65 Aligned_cols=414 Identities=47% Similarity=0.848 Sum_probs=396.2
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHh-CCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEe
Q 008152 146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEV 222 (576)
Q Consensus 146 ~~~eG~~vy~hS~ahlL~~A~~~~f-g~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~v 222 (576)
++.+|.++||||++|||+.|++++| +..+.++|+++ +||||||.. +.++|++|+.+||++|+++| |+||++.++
T Consensus 1 ~~~~g~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~--~g~~~d~~~-~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v 77 (575)
T PRK12305 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIE--DGFYYDFDV-PEPFTPEDLKKIEKKMKKIIKRGLPFEREEV 77 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCceEEeCCCcC--CeEEEEeeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 5789999999999999999999999 57899999998 999999986 46799999999999999999 999999999
Q ss_pred CHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccc
Q 008152 223 TRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGIS 302 (576)
Q Consensus 223 s~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~ 302 (576)
+++||.++|+++++|.+|++..++ +.|++|+||+++|+|+||||||||+|+.|+|+++++|||+++++++.+|||||++
T Consensus 78 ~~eeA~~~f~~~~~k~~l~~~~~~-~~vri~~ig~~~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~ 156 (575)
T PRK12305 78 SREEAREEFANEPYKLELIDDIPE-EGITIYDNGDFEDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTA 156 (575)
T ss_pred cHHHHHHhCCcChhHHHhhhhcCC-CeEEEEEECCEEEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEe
Confidence 999999999998899999998754 5899999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhhhh-----------------------------------------------------------------------
Q 008152 303 YPDKKRLKH----------------------------------------------------------------------- 311 (576)
Q Consensus 303 fp~~~~L~~----------------------------------------------------------------------- 311 (576)
||++++|.+
T Consensus 157 ~~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~ 236 (575)
T PRK12305 157 WETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKS 236 (575)
T ss_pred cCCHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 999999955
Q ss_pred ----------------------------------------------hhhcCCeeeeeeccceeccccCCCccceeccccc
Q 008152 312 ----------------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ 345 (576)
Q Consensus 312 ----------------------------------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~ 345 (576)
+|+++|+|++++|.+||+|.+|.+.|+.|+|||+
T Consensus 237 ~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~ 316 (575)
T PRK12305 237 DLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFT 316 (575)
T ss_pred HHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeE
Confidence 5678999999999999999998889999999999
Q ss_pred ccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC-CccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCC
Q 008152 346 QDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP-EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDG 423 (576)
Q Consensus 346 q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~-~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~ 423 (576)
|+|+|+||+++++.+|+.++++++.++|+.||++ +.+.+++|+ ++++|+.+.|+++++.++++|+..|++|+.+++++
T Consensus 317 q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~ 396 (575)
T PRK12305 317 QDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGA 396 (575)
T ss_pred EcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCc
Confidence 9999999999999999999999999999999998 999999998 88999999999999999999999999999999999
Q ss_pred cccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCC
Q 008152 424 AFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLS 503 (576)
Q Consensus 424 afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~la 503 (576)
+||||++|+.+.|++|+.|||+|+|+||++|.+||++|++.+ |+..+|+|||++++||+||++++|.|+++|+||.|++
T Consensus 397 ~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~-~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p~~~~ 475 (575)
T PRK12305 397 AFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAED-GKRQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLA 475 (575)
T ss_pred ccccccEEEEeeccCCCceeccceeeecccHhhCCCEEECCC-CCccCceEEEccccccHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999999999999877 7788999999999999999999999999999999999
Q ss_pred CceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 504 PRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 504 P~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|.||+|+|++++..++|.+|++.||++|++|++|+++.++||||++|++.|+||++|+|+-
T Consensus 476 p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~p~~iivG~~ 536 (575)
T PRK12305 476 PVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPYMLVVGDK 536 (575)
T ss_pred CccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEech
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 8
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=5.8e-76 Score=658.23 Aligned_cols=406 Identities=47% Similarity=0.857 Sum_probs=384.7
Q ss_pred HHHHHHHHHHHHHHHhC-CeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhh
Q 008152 155 WHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMF 231 (576)
Q Consensus 155 ~hS~ahlL~~A~~~~fg-~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF 231 (576)
|||++|||+.|++++|+ ..+.++|+++ +|+||||.. +.++|++|+.+||++|+++| |+||++..+++++|.++|
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~--~g~~~df~~-~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f 77 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVVE--DGFYYDFEL-DRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAF 77 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCcC--CCceecccC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHH
Confidence 79999999999999994 6799999998 999999975 56799999999999999999 999999999999999999
Q ss_pred c-cCcchhhhcccCCCCCcEEEEEeCC-eecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhh
Q 008152 232 S-DNNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRL 309 (576)
Q Consensus 232 ~-~~~~K~~Ll~~~~~~~~v~vy~~g~-~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L 309 (576)
+ .+++|.+|+++++..+.|++|+||+ |+|+|+||||||||+|+.|+|.++++|||++++++..+|||||++||+++.|
T Consensus 78 ~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l 157 (563)
T TIGR00418 78 KVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADKKQL 157 (563)
T ss_pred hccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCCHHHH
Confidence 8 4567999999864457899999999 9999999999999999999999999999999999999999999999999998
Q ss_pred hh------------------------------------------------------------------------------
Q 008152 310 KH------------------------------------------------------------------------------ 311 (576)
Q Consensus 310 ~~------------------------------------------------------------------------------ 311 (576)
.+
T Consensus 158 ~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg 237 (563)
T TIGR00418 158 AAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISG 237 (563)
T ss_pred HHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcC
Confidence 55
Q ss_pred ---------------------------------------hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEE
Q 008152 312 ---------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF 352 (576)
Q Consensus 312 ---------------------------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF 352 (576)
+|+++|++++++|.+||+|.+|++.||+|+|||+|.|+|+|
T Consensus 238 ~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~ 317 (563)
T TIGR00418 238 HWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIF 317 (563)
T ss_pred CcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEE
Confidence 56789999999999999999998899999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccC-CCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccce
Q 008152 353 CRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKI 430 (576)
Q Consensus 353 ~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr-~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpki 430 (576)
|.+++++.|+.++++++.++|+.||++ +.+.++++ |++++|++..|+++...++++|+.+|++|+++++.|++|+|++
T Consensus 318 ~~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~ 397 (563)
T TIGR00418 318 CTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKI 397 (563)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceE
Confidence 999999999999999999999999998 78999988 6678999999999999999999999999999999999999999
Q ss_pred eEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEE
Q 008152 431 DISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVC 510 (576)
Q Consensus 431 d~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vi 510 (576)
++.+.|++|+.|||+|+|+|+.+++|||+.|...+ |++.+|+|||++..||+||++++|.|++++.||.|++|.||+|+
T Consensus 398 ~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~-g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~~p~~v~vi 476 (563)
T TIGR00418 398 DFAFKDALGREWQCATVQLDFELPERFDLTYVDED-NEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVI 476 (563)
T ss_pred EEEeecCCCCceeeceeeeccCCHhhcCCEEECCC-CCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcCCCceEEEE
Confidence 99999999999999999999999999999998877 77889999999999999999999999888899999999999999
Q ss_pred eCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 511 PVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 511 pv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|++++..++|.+|++.||++|++|++|+++.++|+|+++|++.|+||++|+|+-
T Consensus 477 ~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~~~sl~~q~k~A~~~g~~~~iiiG~~ 530 (563)
T TIGR00418 477 PVNERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVVGDK 530 (563)
T ss_pred EccchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEchh
Confidence 999999999999999999999999999999999999999999999999999974
No 9
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-70 Score=602.18 Aligned_cols=333 Identities=36% Similarity=0.604 Sum_probs=318.2
Q ss_pred eCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeecccCC-CCCCCCCCcccEEEEeecceeecCCCCCCCceeEec
Q 008152 222 VTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRG-PHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYG 300 (576)
Q Consensus 222 vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~G-phvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg 300 (576)
++++||+++|++|+||.++|+. ..++ | ||+++|+|+| |||||||.||+|+|++.++. ++.+++.||||||
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~---g~~~~~~l~Riyg 116 (545)
T PRK14799 46 ITLDEVKKAINENVLANVSIEN----NQIV-Y-KGNKVSIIEDKVSISTNLNPKYFEILNISTH---HPNPNEQYVRIRG 116 (545)
T ss_pred ccHHHHHHHHhcCcceeeEeec----CcEE-E-ccCceeecCCCCCCCCCCCcceEEEEEeccC---CCccCceeEEEEE
Confidence 5788999999999999999973 3444 4 9999999999 99999999999999999987 8999999999999
Q ss_pred cccCChhhhhh---------------------------------------------------------------------
Q 008152 301 ISYPDKKRLKH--------------------------------------------------------------------- 311 (576)
Q Consensus 301 ~~fp~~~~L~~--------------------------------------------------------------------- 311 (576)
++||++++|++
T Consensus 117 ~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~ 196 (545)
T PRK14799 117 VAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVF 196 (545)
T ss_pred eecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccc
Confidence 99999999966
Q ss_pred -----------------------------------------------hhhcCCeeeeeeccceeccccCCCccceecccc
Q 008152 312 -----------------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRF 344 (576)
Q Consensus 312 -----------------------------------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF 344 (576)
|||++|++++++|.+||+|.+|++.||+|+|||
T Consensus 197 ~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF 276 (545)
T PRK14799 197 KTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGF 276 (545)
T ss_pred hHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeE
Confidence 799999999999999999999999999999999
Q ss_pred cccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe---EEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCC
Q 008152 345 QQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT---YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421 (576)
Q Consensus 345 ~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~---~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g 421 (576)
+|+|+||||+++|+.+|+.++++++.++|+.||++ +.+.+|+||++++|.++.|++++..|+++|+..|++|+++++
T Consensus 277 ~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g 356 (545)
T PRK14799 277 VQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEK 356 (545)
T ss_pred EEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecc
Confidence 99999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred CCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCC
Q 008152 422 DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFW 501 (576)
Q Consensus 422 ~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~ 501 (576)
+|+||||++|+.+.|++||.|||+|+|+||++|.||+++|.+++ |...+|+|||++++||+||++++|+||+.|.||+|
T Consensus 357 ~gafygpkiD~~v~dalgr~~q~~Tiqldf~lp~rf~Ley~~~~-~~~~~pv~ihr~~~GgiERli~iL~e~~~G~~P~w 435 (545)
T PRK14799 357 EGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKD-GIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW 435 (545)
T ss_pred eeccccCccceEehhhcCchhhhhhhhhhcCcccccceEEEcCC-CCCcccEEEEccCCCCHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999998876 67789999999999999999999999988999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 502 LSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 502 laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
++|.||+|+|++++..++|.+|++.||++|++|++|+++.++|+|+++|++.|+||++|||+-
T Consensus 436 laP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip~viIIG~~ 498 (545)
T PRK14799 436 LSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKK 498 (545)
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEChh
Confidence 999999999999999999999999999999999999999999999999999999999999974
No 10
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-48 Score=436.58 Aligned_cols=247 Identities=29% Similarity=0.457 Sum_probs=233.9
Q ss_pred hhhhcCCeeeeeecc-ceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 008152 311 HAFAELPLRLADFGV-LHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (576)
Q Consensus 311 ~s~relpl~l~~vg~-l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~ 388 (576)
.||++||++++++|. +||+|.+|++.||+|+|+|+|+|+|+||++ +|+.+|+..+++++.++|+.||+++.+.+++.
T Consensus 302 ~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t- 380 (613)
T PRK03991 302 ISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRFT- 380 (613)
T ss_pred CchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCH-
Confidence 489999999999999 999999999999999999999999999997 99999999999999999999999999888752
Q ss_pred CccCCChHHHHHHHHHHHHHHHHcCCCcEE--cCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCC
Q 008152 389 EKYLGDLATWEKAEAALTEALNEFGKPWQI--NEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDE 466 (576)
Q Consensus 389 ~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~--~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~ 466 (576)
.+.|+.++..|+++++..|.+|.+ .+|+++|||||+|+.+.|++||.|||+|+|+|++++.+||++|.+++
T Consensus 381 ------~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~~- 453 (613)
T PRK03991 381 ------EDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDEN- 453 (613)
T ss_pred ------HHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECCC-
Confidence 467999999999999999999877 57889999999999999999999999999999999999999999887
Q ss_pred CcccccEEEEecccccHHHHHHHHHHhcCCC--------CCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 467 AKTERPVMIHRAILGSVERMFAILLEHYKGK--------WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 467 g~~~~P~ii~~a~~GgiERlia~L~E~~~g~--------~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
|..++|++|||+++||+||++++|+|+++|. ||+||||.||+|+|++++..++|.+|++.|+++|++|++|+
T Consensus 454 g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lDd 533 (613)
T PRK03991 454 GEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVDD 533 (613)
T ss_pred CCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7777899999999999999999999998876 99999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhHhcCCceEEEecceE
Q 008152 539 TDRKIQKKVTTSNFEIKNPHYFYCPML 565 (576)
Q Consensus 539 ~~~slgkkir~A~~~g~p~~iIiGp~~ 565 (576)
++.++|+||++|++.|+||++|||+--
T Consensus 534 r~~slgkKir~A~~~GiP~iIVIG~kE 560 (613)
T PRK03991 534 RDESLGKKIRDAGKEWIPYVVVIGDKE 560 (613)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECcch
Confidence 999999999999999999999999753
No 11
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=4.3e-44 Score=370.45 Aligned_cols=277 Identities=47% Similarity=0.815 Sum_probs=225.8
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|++ ++.. -...-...|++.|.+.. +.-++....|.=+-.++|+..+. ++.. .=.+|++.+
T Consensus 20 ~G~~-~~~p----~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~----~~~~----~~~my~~~~----- 81 (298)
T cd00771 20 PGLP-FWLP----KGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGH----WDHY----RENMFPFEE----- 81 (298)
T ss_pred Ccce-EEcc----cHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCC----cccc----ccCceEecc-----
Confidence 6875 4431 23455678888888877 77777777765444444433111 0000 002444311
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
+| .-+.|+..+.....++| ..-..+|+++|+|++++|.+||+|.+|.+.||.|+|
T Consensus 82 -------~~-----------~~l~LRP~~~~~~~~~~-------~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~r 136 (298)
T cd00771 82 -------ED-----------EEYGLKPMNCPGHCLIF-------KSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVR 136 (298)
T ss_pred -------CC-----------ceEEEcccCCHHHHHHH-------HhhccchhhCCeEEEEecCcccCCCCCCCCCccccc
Confidence 11 23445543322333432 111226889999999999999999998889999999
Q ss_pred cccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCC
Q 008152 343 RFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421 (576)
Q Consensus 343 eF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g 421 (576)
||+|.|+|+||+++++.+|+.++++++.++|+.||++ +.+.++++++++.|+.+.|+.+++.+++++...|++|+++||
T Consensus 137 eF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g 216 (298)
T cd00771 137 GFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEG 216 (298)
T ss_pred cEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCC
Confidence 9999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred CCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCC
Q 008152 422 DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFW 501 (576)
Q Consensus 422 ~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~ 501 (576)
+|||||||||+.+.|++||.|||+|+||||++|.+||++|++++ |..++|+|||++++|++||+||+|+|+++|+||+|
T Consensus 217 ~~afygpkid~~~~d~~gr~~q~~t~qld~~~~~~f~l~y~~~~-~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~g~~P~w 295 (298)
T cd00771 217 EGAFYGPKIDFHVKDALGREWQCSTIQLDFNLPERFDLTYIGED-GEKKRPVMIHRAILGSIERFIGILIEHYAGKFPLW 295 (298)
T ss_pred CcccccceEEEEEEeCCCCeeecceeEeeccChhhcCCEEEccC-CCccCCEEEEeCCCCcHHHHHHHHHHhhCCCCCCc
Confidence 99999999999999999999999999999999999999999887 77889999999999999999999999999999999
Q ss_pred CCC
Q 008152 502 LSP 504 (576)
Q Consensus 502 laP 504 (576)
|||
T Consensus 296 laP 298 (298)
T cd00771 296 LAP 298 (298)
T ss_pred cCc
Confidence 998
No 12
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.7e-39 Score=346.67 Aligned_cols=328 Identities=18% Similarity=0.226 Sum_probs=248.2
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+| ++. +.-..-+++|++.+++.. ..-++...+|.=.-.++++..+. ++.. .=.+|++.+--
T Consensus 37 ~G~~-~~l----P~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~----~~~~----~~emf~~~d~~--- 100 (439)
T PRK12325 37 AGIY-SWL----PLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGR----YDAY----GKEMLRIKDRH--- 100 (439)
T ss_pred CceE-EEC----CcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCC----cccc----chhheEEecCC---
Confidence 7875 442 344566788888888888 88888888877655566644321 0000 01233331100
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCC-CceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceec
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRE-SLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRV 341 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~-~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRv 341 (576)
..-|.|+ |+++ ...-++ +....||++||++++++|.+||+|.+|+ .||+|+
T Consensus 101 -------------------~~~~~L~-Pt~e~~~~~~~-------~~~~~syrdLPlrl~q~~~~fR~E~~~~-~GL~R~ 152 (439)
T PRK12325 101 -------------------DREMLYG-PTNEEMITDIF-------RSYVKSYKDLPLNLYHIQWKFRDEIRPR-FGVMRG 152 (439)
T ss_pred -------------------CCEEEEc-CCCcHHHHHHH-------HHHhhhchhhchHheEecCEecCCCCCC-CCcccc
Confidence 1123333 2222 111111 1223479999999999999999998885 899999
Q ss_pred ccccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCc-----------cCCC--------------
Q 008152 342 RRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEK-----------YLGD-------------- 394 (576)
Q Consensus 342 reF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~~-----------~~G~-------------- 394 (576)
|||+|+|+|+||.+ +++.+|+.++++++.++|+.||++ +.+.+++++.+ .+|+
T Consensus 153 reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~ 232 (439)
T PRK12325 153 REFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLV 232 (439)
T ss_pred ceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhcc
Confidence 99999999999887 789999999999999999999999 67778877621 1233
Q ss_pred ---hHHHHHHHHHHHHHHHHcCCCc---EEcCCCCccc-ccceeEEEec--cccCceecceeeecccCCceeeeEEeecC
Q 008152 395 ---LATWEKAEAALTEALNEFGKPW---QINEGDGAFY-GPKIDISVSD--ALKRKFQCATLQLDFQLPDRFNLGYSAED 465 (576)
Q Consensus 395 ---~~~~~~a~~~L~~~l~~~~~~~---~~~~g~~afy-gpkid~~~~d--~~gr~~~~~tiqld~~~~~rf~l~y~~~~ 465 (576)
...|+. ..|+++|+..+..| ...+++++|| +|++++...+ +.|+.|+++|. ++.+||++|.+++
T Consensus 233 ~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~-----ys~~f~~~y~d~~ 305 (439)
T PRK12325 233 PGEDIDFDV--ADLQPIVDEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTK-----YSEPMNAKVQGPD 305 (439)
T ss_pred CCCcccCCH--HHHHHHHhhhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCccc-----ccHhcCCEEECCC
Confidence 334665 77888888776554 2345667899 9999988777 46888888774 5899999998876
Q ss_pred CCcccccEEEEecccc-cHHHHHHHHHHhc----CCCCCCCCCCceEEEEeC---CCChHHHHHHHHHHHHhCCcEEEEe
Q 008152 466 EAKTERPVMIHRAILG-SVERMFAILLEHY----KGKWPFWLSPRQAIVCPV---SEKSQPYALQVRDHIYRAGYYVDVD 537 (576)
Q Consensus 466 ~g~~~~P~ii~~a~~G-giERlia~L~E~~----~g~~P~~laP~qV~Vipv---~~~~~~~a~~i~~~Lr~~Gi~v~vD 537 (576)
|. +++||++++| |+||++++|+|++ ++.||.|+||.||+|+|+ +++..++|.+|++.|+++|++|++|
T Consensus 306 -g~---~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D 381 (439)
T PRK12325 306 -GK---EVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYD 381 (439)
T ss_pred -CC---EEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 43 3457889888 6999999999997 459999999999999999 5667899999999999999999999
Q ss_pred CCCCcHHHHHHHhHhcCCceEEEecceEE
Q 008152 538 TTDRKIQKKVTTSNFEIKNPHYFYCPMLL 566 (576)
Q Consensus 538 ~~~~slgkkir~A~~~g~p~~iIiGp~~~ 566 (576)
+++.++|+||++|++.|+||++|||+--+
T Consensus 382 ~~~~~lg~ki~~a~~~giP~~iiVG~~e~ 410 (439)
T PRK12325 382 DTDERPGAKFATMDLIGLPWQIIVGPKGL 410 (439)
T ss_pred CCCCCHhHHHHHHHHcCCCEEEEECCccc
Confidence 99999999999999999999999998644
No 13
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-35 Score=321.93 Aligned_cols=255 Identities=21% Similarity=0.247 Sum_probs=199.8
Q ss_pred CCCcccEEEEee---------cceeecCCCCCCCceeEeccccCChhhhhhhhh-cCCeeeeeeccceeccccCCCccce
Q 008152 270 TSFVKGFGCLKA---------SSAYWRGNKDRESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLT 339 (576)
Q Consensus 270 Tg~Ik~f~l~~~---------~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~r-elpl~l~~vg~l~R~e~~g~l~gLi 339 (576)
-+.++.|.++.- .+-.+|++ ++-|-+ |+.=+...+||| +||++++++|.+||+|.+| +.||+
T Consensus 136 ~~~~~~f~l~f~~~~g~~~~~~~~~~lRp---etaqg~----~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~-~~gL~ 207 (456)
T PRK04173 136 WTEVRQFNLMFKTFIGPVEDSKSLGYLRP---ETAQGI----FVNFKNVLRTARKKLPFGIAQIGKSFRNEITP-RNFIF 207 (456)
T ss_pred CcCccchhhceeecccCccCCCcceeecc---ccchhH----HHHHHHHHHhccccCCeeeeEEchhHhCccCC-CCCce
Confidence 566777777622 22333443 334433 344467778999 9999999999999999998 69999
Q ss_pred ecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC--ccCCChHHHHHHHHHHHHHHHHcCCCc
Q 008152 340 RVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE--KYLGDLATWEKAEAALTEALNEFGKPW 416 (576)
Q Consensus 340 RvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~--~~~G~~~~~~~a~~~L~~~l~~~~~~~ 416 (576)
|+|||+|+|+|+||+++|+.+|+..+++++..+|..||++ +++++++++. .+.|..++|+.. ++...|..|
T Consensus 208 RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~e------~~~~~g~~~ 281 (456)
T PRK04173 208 RTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREHLPEELAHYSKATWDIE------YKFPFGRFW 281 (456)
T ss_pred eeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEecCcchhhccHHHHHhHH------HhCCCCCcE
Confidence 9999999999999999999999999999999999999998 8899998852 567888888873 222233334
Q ss_pred EEcCCCCcccccceeEEEeccccCceecceeeecccCC-----ceeeeEEee-cCCCcccccEEEEecccccHHH-HHHH
Q 008152 417 QINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLP-----DRFNLGYSA-EDEAKTERPVMIHRAILGSVER-MFAI 489 (576)
Q Consensus 417 ~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~-----~rf~l~y~~-~~~g~~~~P~ii~~a~~GgiER-lia~ 489 (576)
...+|. +.+.||.++ .+||+.|.+ ..+|.+.+|+|||+|+ | +|| ++|+
T Consensus 282 ~e~~g~-----------------------~~~~dydL~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~si-G-ieRl~~ai 336 (456)
T PRK04173 282 GELEGI-----------------------ANRTDYDLSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSA-G-LDRLLLAF 336 (456)
T ss_pred EEEeee-----------------------eccchhhcccchhhcCCCeEEEecCCCCceeeeEEEEecc-c-HHHHHHHH
Confidence 333221 112233332 479999983 2226788999999995 5 999 5656
Q ss_pred HHHhcCC------------CCCCCCCCceEEEEeCCC--ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCC
Q 008152 490 LLEHYKG------------KWPFWLSPRQAIVCPVSE--KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIK 555 (576)
Q Consensus 490 L~E~~~g------------~~P~~laP~qV~Vipv~~--~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~ 555 (576)
|.+++.| +||+|+||.||+|+|+++ +..++|.+|++.||++ ++|++|++ .++|+||++|++.|+
T Consensus 337 l~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~~-~slgkkir~A~~~Gi 414 (456)
T PRK04173 337 LEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDDS-GSIGKRYRRQDEIGT 414 (456)
T ss_pred HHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeCC-CCHHHHHHHHHHcCC
Confidence 6676666 799999999999999987 3789999999999999 99999975 699999999999999
Q ss_pred ceEEEecceE
Q 008152 556 NPHYFYCPML 565 (576)
Q Consensus 556 p~~iIiGp~~ 565 (576)
||++|||+--
T Consensus 415 p~~IIIG~~E 424 (456)
T PRK04173 415 PFCITVDFDT 424 (456)
T ss_pred CEEEEECCch
Confidence 9999999643
No 14
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=2.6e-34 Score=314.22 Aligned_cols=220 Identities=20% Similarity=0.292 Sum_probs=185.8
Q ss_pred hhhhcCCeeeeeeccceeccccCCCccceecccccccCee-EEcCchhHHHHHHHHHHHHHHHHH-HhCCeEEEEEccCC
Q 008152 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRESQIKDEVRGVLEFIDYAYR-IFGFTYELKLSTRP 388 (576)
Q Consensus 311 ~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~-iF~~~~~~~~e~~~~l~~~~~i~~-~lG~~~~l~lstr~ 388 (576)
.||++||+++++++.+||+|.++. .||+|+|||+|+|+| +||+++++.+|+..+++++.++|+ .||+++.+...+..
T Consensus 119 ~S~rdLPlr~~q~~~vfR~E~~~~-~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ 197 (472)
T TIGR00408 119 KSYTDLPLKINQWVNVFRYETKHT-RPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEW 197 (472)
T ss_pred cChhhcCHHHhheeeeecCCCCCC-CCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCch
Confidence 478999999999999999999986 999999999999999 588889999999999999999998 99999766554322
Q ss_pred CccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceee-ecccCCceeeeEEeecCCC
Q 008152 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (576)
Q Consensus 389 ~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq-ld~~~~~rf~l~y~~~~~g 467 (576)
+++.| +.+...++..+.| ||.+|++|++ |+++++.+||++|.+++ |
T Consensus 198 ek~~g------------------------------a~~~~~~e~~~~d--gr~~q~~t~~~Lg~~~sk~f~i~y~~~~-g 244 (472)
T TIGR00408 198 EKFAG------------------------------AEYTWAFETIMPD--GRTLQIATSHNLGQNFAKTFEIKFETPT-G 244 (472)
T ss_pred hhcCC------------------------------ccceEEEeEEEcC--CCEEEEeeeecccccccHhcCCEEECCC-C
Confidence 22222 2222234444445 7999999999 99999999999998765 4
Q ss_pred cccccEEEEecccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEeC--C----CChHHHHHHHHHHHHhCCcEEEEe
Q 008152 468 KTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPV--S----EKSQPYALQVRDHIYRAGYYVDVD 537 (576)
Q Consensus 468 ~~~~P~ii~~a~~GgiERlia~L~E~~~----g~~P~~laP~qV~Vipv--~----~~~~~~a~~i~~~Lr~~Gi~v~vD 537 (576)
.+.++|++++|..||+|++|+|+++ ++||+|+||.||+|+|+ + ++..++|.+|++.|+++|++|++|
T Consensus 245 ---~~~~~h~~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD 321 (472)
T TIGR00408 245 ---DKEYAYQTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHID 321 (472)
T ss_pred ---CEEeeEEccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3466788999755999999999865 37999999999999998 3 357899999999999999999999
Q ss_pred CCCCcHHHHHHHhHhcCCceEEEecceEEE
Q 008152 538 TTDRKIQKKVTTSNFEIKNPHYFYCPMLLV 567 (576)
Q Consensus 538 ~~~~slgkkir~A~~~g~p~~iIiGp~~~~ 567 (576)
+++.++|+||++|++.|+||+++|||--+.
T Consensus 322 ~r~~s~gkk~k~Ae~~GvP~~IiIG~~Ele 351 (472)
T TIGR00408 322 DRDNRPGRKFYQWEIKGIPLRIEVGPNDIE 351 (472)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECcchhh
Confidence 998899999999999999999999986443
No 15
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-33 Score=305.32 Aligned_cols=219 Identities=21% Similarity=0.323 Sum_probs=186.3
Q ss_pred hhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHHHHHHHHH-HHhCCeEEEEEccC
Q 008152 310 KHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVLEFIDYAY-RIFGFTYELKLSTR 387 (576)
Q Consensus 310 ~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l~~~~~i~-~~lG~~~~l~lstr 387 (576)
-.||++||+++++++.+||+|.+ ..||+|+|||+|+|+|+ ||+++++.+|+..+++++.++| +.||+++.+...
T Consensus 124 i~SyrdLPlrl~q~~~vfR~E~~--~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~~~-- 199 (477)
T PRK08661 124 IQSYRDLPLLYNQWVNVVRWETK--TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKK-- 199 (477)
T ss_pred hcchhhcCHHHhcccceeeCCCC--CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEec--
Confidence 34899999999999999999998 46999999999999998 5666999999999999999999 999999654432
Q ss_pred CCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceee-ecccCCceeeeEEeecCC
Q 008152 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDE 466 (576)
Q Consensus 388 ~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq-ld~~~~~rf~l~y~~~~~ 466 (576)
+ .|++. .|+.+.+.++..+.| |+.+|++|++ |+++++.+||++|.+++
T Consensus 200 ~--------~~ekf--------------------~ga~~~~~ie~~~~d--gr~~q~gt~~~Lg~~~s~~f~i~y~d~~- 248 (477)
T PRK08661 200 T--------EWEKF--------------------AGADYTYTIEAMMPD--GKALQAGTSHYLGQNFAKAFDIKFQDKD- 248 (477)
T ss_pred C--------hHHhh--------------------CCCcceeEEEEEeCC--CCEEEEEEecccccchhHhcCCEEECCC-
Confidence 2 13221 234555667766655 8999999995 99999999999998776
Q ss_pred CcccccEEEEecccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEeC------CCChHHHHHHHHHHHHhCCcEEEE
Q 008152 467 AKTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPV------SEKSQPYALQVRDHIYRAGYYVDV 536 (576)
Q Consensus 467 g~~~~P~ii~~a~~GgiERlia~L~E~~~----g~~P~~laP~qV~Vipv------~~~~~~~a~~i~~~Lr~~Gi~v~v 536 (576)
|....| |++++|..+|+|++|+|+++ ..||+|+||.||+|+|+ +++..++|.+|++.|+++|++|.+
T Consensus 249 g~~~~v---~~~s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~l 325 (477)
T PRK08661 249 GKLEYV---HQTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKL 325 (477)
T ss_pred CCEeee---EEecccHHHHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 544433 77889877999999999876 37999999999999999 566789999999999999999999
Q ss_pred eC-CCCcHHHHHHHhHhcCCceEEEecceEE
Q 008152 537 DT-TDRKIQKKVTTSNFEIKNPHYFYCPMLL 566 (576)
Q Consensus 537 D~-~~~slgkkir~A~~~g~p~~iIiGp~~~ 566 (576)
|+ ++.++|+||++|++.|+|++|+|||--+
T Consensus 326 D~r~~~s~gkK~~~ae~~GvP~~IiIG~~el 356 (477)
T PRK08661 326 DDRSDKTPGWKFNEWELKGVPLRIEIGPRDL 356 (477)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEECcchh
Confidence 99 6799999999999999999999998643
No 16
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.97 E-value=5.3e-29 Score=278.64 Aligned_cols=335 Identities=19% Similarity=0.274 Sum_probs=218.8
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+| ++. +....-+.+|++.+++.. +.-++...+|.-+-.++|+..+. ++.. . + .+|++.|-
T Consensus 37 ~G~~-~~l----P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~----~~~~-~-~--emf~~~d~---- 99 (565)
T PRK09194 37 SGIY-TYL----PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGR----WEEY-G-P--ELLRLKDR---- 99 (565)
T ss_pred CCee-EEC----ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCC----cccc-c-h--hceEEecC----
Confidence 7875 553 234556788888888888 88899998888777777765331 0100 0 1 25554220
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
...-++|++...+....++ ..--.+|+++|+++++++.+||+|.+++ .||+|+|
T Consensus 100 ------------------~~~~l~LrPt~e~~~~~~~-------~~~~~s~~~LP~r~yqi~~~fR~E~rp~-~Gl~R~r 153 (565)
T PRK09194 100 ------------------HGRDFVLGPTHEEVITDLV-------RNEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGR 153 (565)
T ss_pred ------------------CCCEEEECCCChHHHHHHH-------HhhhhhcccCCeEEEEeeCCccCCCCCC-Ccccccc
Confidence 0123455543333332222 1112378899999999999999997775 8999999
Q ss_pred cccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC------------ccCCChH-----------HH
Q 008152 343 RFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE------------KYLGDLA-----------TW 398 (576)
Q Consensus 343 eF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~------------~~~G~~~-----------~~ 398 (576)
||+|.|+|+||.+ ++++.|+.++++.+.++|++||++|.+..+++.. ...|+++ ..
T Consensus 154 eF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~ 233 (565)
T PRK09194 154 EFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANI 233 (565)
T ss_pred cEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhh
Confidence 9999999999987 5677799999999999999999998887665421 0011111 11
Q ss_pred HHHH---------------------------------------------------------------HHHHHHH------
Q 008152 399 EKAE---------------------------------------------------------------AALTEAL------ 409 (576)
Q Consensus 399 ~~a~---------------------------------------------------------------~~L~~~l------ 409 (576)
++|. ..+++++
T Consensus 234 e~a~~~~~~~~~~~~~~~~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~ 313 (565)
T PRK09194 234 EKAEALPPPRAAAEEALEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLE 313 (565)
T ss_pred hhhcccCCCCccccccceeecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccc
Confidence 1111 0011111
Q ss_pred --------HHcC----------CCc----EEcC----------CC---Cccc---ccceeEE---Ee--------ccc--
Q 008152 410 --------NEFG----------KPW----QINE----------GD---GAFY---GPKIDIS---VS--------DAL-- 438 (576)
Q Consensus 410 --------~~~~----------~~~----~~~~----------g~---~afy---gpkid~~---~~--------d~~-- 438 (576)
+..| ... -.++ |. |-++ .+.-|+. +. |.+
T Consensus 314 ~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~ 393 (565)
T PRK09194 314 LATEEEIRAALGAVPGFLGPVGLPKDVPIIADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPD 393 (565)
T ss_pred cCCHHHHHHhhCCCCCccCcccCCCCceEEEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCC
Confidence 0000 000 0000 00 0000 0000110 00 111
Q ss_pred -c------Cceeccee-eecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcC---C-CCCCCCCCce
Q 008152 439 -K------RKFQCATL-QLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPRQ 506 (576)
Q Consensus 439 -g------r~~~~~ti-qld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~laP~q 506 (576)
| +..+.+++ +|.-+++.+|+++|.+++ |+. .|+.+++..+ |++|++++|+|+++ | .||.++||+|
T Consensus 394 c~~~l~~~~~iEvGh~f~lG~~ys~~~~~~~~~~~-g~~-~~~~m~~~gI-Gv~Rli~al~e~~~d~~gl~~P~~iaP~~ 470 (565)
T PRK09194 394 GGGTLKIARGIEVGHIFQLGTKYSEAMNATVLDEN-GKA-QPLIMGCYGI-GVSRLVAAAIEQNHDEKGIIWPKAIAPFD 470 (565)
T ss_pred CCceeEEeeeEEEEEEecCCcchhhccCCEEECCC-CCE-EeEEEeeEec-hHHHHHHHHHHhhccccCccCCCccCCce
Confidence 0 22222322 344456678899998876 555 4554566666 59999999999864 4 8999999999
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 507 AIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 507 V~Vipv~---~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|+|+|++ ++..++|.+|++.|+++|++|.+|+++.++|+||++|+++|+||+|+||+-
T Consensus 471 v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k~~~ad~~GiP~~iiiG~~ 531 (565)
T PRK09194 471 VHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFADADLIGIPHRIVVGDR 531 (565)
T ss_pred EEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHHHHHHHhcCCCEEEEEcCc
Confidence 9999997 567889999999999999999999999999999999999999999999975
No 17
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.96 E-value=1.6e-28 Score=273.27 Aligned_cols=337 Identities=17% Similarity=0.236 Sum_probs=214.7
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+| ++. +....-+++|++.+++.. ..-++...+|.-+-.++|+..+.- +.-.=.+|++.|-
T Consensus 37 ~G~~-~~l----P~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~--------~~~~~emf~~~dr---- 99 (568)
T TIGR00409 37 SGLY-NWL----PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRW--------DTYGPELLRLKDR---- 99 (568)
T ss_pred CceE-EEC----ChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCC--------CccchhcEEEecC----
Confidence 7876 442 344556788888888888 888999888887777777653310 0000135553220
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
...-+.|+....+.+.-++ ...-.+|+++|+++++++.+||+|.+++ .||+|+|
T Consensus 100 ------------------~~~~l~LrPT~Ee~~t~~~-------~~~i~syr~LPlrlyqi~~~fR~E~rpr-~Gl~R~R 153 (568)
T TIGR00409 100 ------------------KGREFVLGPTHEEVITDLA-------RNEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGR 153 (568)
T ss_pred ------------------CCCEEEEcCCCcHHHHHHH-------HHHHhhccccCeEEEEeeCEeeCCCCCC-CCccccc
Confidence 0112444433222222110 1123378999999999999999997775 8999999
Q ss_pred cccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC------------ccCCChH-----------HH
Q 008152 343 RFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE------------KYLGDLA-----------TW 398 (576)
Q Consensus 343 eF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~------------~~~G~~~-----------~~ 398 (576)
||+|.|+|+||.+ ++++.|+..+++.+.++|++||++|.+..+++.. ...|+++ ..
T Consensus 154 EF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~ 233 (568)
T TIGR00409 154 EFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANI 233 (568)
T ss_pred cEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhh
Confidence 9999999999998 5677789999999999999999997766544310 0112211 11
Q ss_pred HHHHHH----------------------HHHHHHHcCCC---------cE------------------------------
Q 008152 399 EKAEAA----------------------LTEALNEFGKP---------WQ------------------------------ 417 (576)
Q Consensus 399 ~~a~~~----------------------L~~~l~~~~~~---------~~------------------------------ 417 (576)
++|... +.+....++.+ +.
T Consensus 234 e~a~~~~~~~~~~~~~~~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~ 313 (568)
T TIGR00409 234 ELAEALAPGERNAPTAELDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLV 313 (568)
T ss_pred hhhcccCccccccccccceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhcc
Confidence 111100 00000000000 00
Q ss_pred ---EcC----------CC-Ccccccc-----e---------------------eEEEecc-cc-----------------
Q 008152 418 ---INE----------GD-GAFYGPK-----I---------------------DISVSDA-LK----------------- 439 (576)
Q Consensus 418 ---~~~----------g~-~afygpk-----i---------------------d~~~~d~-~g----------------- 439 (576)
+.+ |. ..|-||. + +.++... .|
T Consensus 314 ~~~~~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eG 393 (568)
T TIGR00409 314 AQVLELATEEEIFQKIASGPGSLGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEG 393 (568)
T ss_pred CcccccCCHHHHHHhhCCCCCccCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhcc
Confidence 000 00 0011220 0 0011000 11
Q ss_pred -------------Cceeccee-eecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcC---C-CCCCC
Q 008152 440 -------------RKFQCATL-QLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFW 501 (576)
Q Consensus 440 -------------r~~~~~ti-qld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~ 501 (576)
+..+.+++ +|.-.+++.||++|.+++ |.. .|+.+++..+ |++|++++++|+++ | .||.|
T Consensus 394 d~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~~~~~~d~~-g~~-~~~~mgcyGI-GvsRli~aiie~~~D~~Gl~wP~~ 470 (568)
T TIGR00409 394 DPSPDGQGTLKIARGIEVGHIFQLGTKYSEALKATFLDEN-GKN-QFMTMGCYGI-GVSRLVSAIAEQHHDERGIIWPKA 470 (568)
T ss_pred CCCCCCCCcccccceEEEEEeccchhhhHHhcCCEEECCC-CCE-EEEEEeCCcc-hHHHHHHHHHHHhCccCCCcCChh
Confidence 11222211 222245567899998876 544 4555566555 69999999999875 4 89999
Q ss_pred CCCceEEEEeCCC---ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecceEE
Q 008152 502 LSPRQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLL 566 (576)
Q Consensus 502 laP~qV~Vipv~~---~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~~~ 566 (576)
+||+||.|+|+.. +..++|.+|++.|+++|++|.+|+|+.++|+||++|+++|+||+|+||+--+
T Consensus 471 iAP~qV~Iip~~~~~~~~~~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l 538 (568)
T TIGR00409 471 IAPYDVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNL 538 (568)
T ss_pred hCCeEEEEEEcCCChHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHhhhhcCCCEEEEECCCcc
Confidence 9999999999862 5678999999999999999999999999999999999999999988887643
No 18
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.93 E-value=5.7e-25 Score=234.55 Aligned_cols=238 Identities=19% Similarity=0.137 Sum_probs=164.0
Q ss_pred CChhhhhhhhh-cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EE
Q 008152 304 PDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YE 381 (576)
Q Consensus 304 p~~~~L~~s~r-elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~ 381 (576)
.+=+.+.+..+ .+|++++|+|..||+|.+++ ++|+|+|||+|.+++.||.++...+.+.-.+.....++..+|++ -+
T Consensus 151 vnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr-~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~ 229 (539)
T PRK14894 151 VNFANVLATSARKLPFGIAQVGKAFRNEINPR-NFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSR 229 (539)
T ss_pred HHHHHHHHhcCCCCCeeEEeeeccccCccCCC-CceeecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 33355555555 89999999999999999998 99999999999999999999877777788888889999999997 55
Q ss_pred EEEccCCCccC--CChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceee------ecccC
Q 008152 382 LKLSTRPEKYL--GDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ------LDFQL 453 (576)
Q Consensus 382 l~lstr~~~~~--G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq------ld~~~ 453 (576)
+++...+.+.+ -...+||.- +... ..-|..-.| .-+-...| +++ |+..+-+ ..++.
T Consensus 230 lrfr~h~~~ElAHYa~~~~D~e------~~~p-~~Gw~E~~G--ia~RtdyD------L~~-H~~~s~~~~l~~~~~~~~ 293 (539)
T PRK14894 230 ITIYDVPPDELAHYSKRTFDLM------YDYP-NIGVQEIEG--IANRTDYD------LGS-HSKDQEQLNLTARVNPNE 293 (539)
T ss_pred eeeeecCcHHhhhhhhccEEEE------EECC-CCCeEEEEE--eecccccC------HHH-HhhhcccCCceeeecccc
Confidence 55543321100 001111110 0000 000111001 00000001 111 2211111 12223
Q ss_pred CceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHh----------------------------------------
Q 008152 454 PDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEH---------------------------------------- 493 (576)
Q Consensus 454 ~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~---------------------------------------- 493 (576)
....++.|.+...|.+-.|.+|..+. |++|++.+++++
T Consensus 294 ~s~~~l~~~~~~~~~~~iP~ViEpS~--G~dR~~~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (539)
T PRK14894 294 DSTARLTYFDQASGRHVVPYVIEPSA--GVGRCMLAVMCEGYAEELTKAIPGEKLAAVGDALEAFLKSVGRSEKLAGEAR 371 (539)
T ss_pred CCCceEEEEeccCCcccCCceeecCc--chhHHHHHHHHHHHhhhhhcccccccccccccchhhhccccccccccccccc
Confidence 44556777765546677899999984 699988877654
Q ss_pred --------------------------------------------------cCC--CCCCCCCCceEEEEeCCCC---hHH
Q 008152 494 --------------------------------------------------YKG--KWPFWLSPRQAIVCPVSEK---SQP 518 (576)
Q Consensus 494 --------------------------------------------------~~g--~~P~~laP~qV~Vipv~~~---~~~ 518 (576)
+.| .||+||||+||+|+|+.++ ..+
T Consensus 372 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~rgvLplp~wLAPvQVaVLPLs~~~~~l~e 451 (539)
T PRK14894 372 DAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEHYRTVLRLKPRLAPIKVAVFPLKRNHEGLVA 451 (539)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCcccceecCCCcCCCCceEEEEeccccccchHH
Confidence 223 3669999999999999973 459
Q ss_pred HHHHHHHHHHhCCc-EEEEeCCCCcHHHHHHHhHhcCCceEEEe
Q 008152 519 YALQVRDHIYRAGY-YVDVDTTDRKIQKKVTTSNFEIKNPHYFY 561 (576)
Q Consensus 519 ~a~~i~~~Lr~~Gi-~v~vD~~~~slgkkir~A~~~g~p~~iIi 561 (576)
||++|++.|+++|+ +|.+|+ ++++|||||+||++|+||+|+|
T Consensus 452 yAkeI~~~L~~~Gi~rv~~Dd-sesIGKKyRraDeiGiPy~ITV 494 (539)
T PRK14894 452 TAKAVRRQLQVGGRMRTVYDD-TGAIGKLYRRQDEIGTPFCITV 494 (539)
T ss_pred HHHHHHHHHHHCCCceEEEcC-CCCHhHHHHhhhccCCCEEEEE
Confidence 99999999999998 999999 5699999999999999999999
No 19
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.93 E-value=5.9e-25 Score=240.72 Aligned_cols=262 Identities=21% Similarity=0.244 Sum_probs=169.6
Q ss_pred CCCceeEeccccCChhhhhhhhh-cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchh-HHHHHHHHHHHH
Q 008152 292 RESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFI 369 (576)
Q Consensus 292 ~~~lqRiyg~~fp~~~~L~~s~r-elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~-~~~e~~~~l~~~ 369 (576)
|++-|-+ |.+=+.|.+..+ .+|++++|+|..||||.+++ +||+|+|||+|.++|.||.++. ....+..+.+..
T Consensus 161 PETAQGi----FvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr-~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~ 235 (551)
T TIGR00389 161 PETAQGI----FINFKRLLQFFRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDI 235 (551)
T ss_pred cccchhh----HHhHHHHHHhcCCCCCeeehhhhHhhhcccCcc-cceEEeehhhhchhheecCcccccchhhHHHHHHH
Confidence 4455544 344466777666 89999999999999999998 9999999999999999999943 222233333333
Q ss_pred HHHHHHhCCeEEEEEccCCC-ccCCChHHHHHHHHHHHHHHHHcCCCcE------EcCCCCcccccc-eeEEEeccccCc
Q 008152 370 DYAYRIFGFTYELKLSTRPE-KYLGDLATWEKAEAALTEALNEFGKPWQ------INEGDGAFYGPK-IDISVSDALKRK 441 (576)
Q Consensus 370 ~~i~~~lG~~~~l~lstr~~-~~~G~~~~~~~a~~~L~~~l~~~~~~~~------~~~g~~afygpk-id~~~~d~~gr~ 441 (576)
..+|.+=- -...+.+..+ +.+ .++....+.+....+|.+.|++-+ ..+.+-|+|+-. +|+.+....|
T Consensus 236 ~~l~~~~~--~~~~~~eav~~g~i-~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~G-- 310 (551)
T TIGR00389 236 LPLLPRQM--QESGIGEAVESGMI-ENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYG-- 310 (551)
T ss_pred Hhhccchh--hhccHHHHHHhccc-chHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCCC--
Confidence 22221100 0000111000 122 233455556666667777775321 122334566332 4444433332
Q ss_pred e-ecceee----ecccCCce---eeeEEeecC------------------------------------------------
Q 008152 442 F-QCATLQ----LDFQLPDR---FNLGYSAED------------------------------------------------ 465 (576)
Q Consensus 442 ~-~~~tiq----ld~~~~~r---f~l~y~~~~------------------------------------------------ 465 (576)
| +|..+. -|++.+.. -++.|....
T Consensus 311 w~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (551)
T TIGR00389 311 WIECVGIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKN 390 (551)
T ss_pred cEEEEEeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhcc
Confidence 2 122211 11111111 122222111
Q ss_pred ------------------CCcccccEEEEecccccHHHHHHHHHHhcCC------------CCCCCCCCceEEEEeCCCC
Q 008152 466 ------------------EAKTERPVMIHRAILGSVERMFAILLEHYKG------------KWPFWLSPRQAIVCPVSEK 515 (576)
Q Consensus 466 ------------------~g~~~~P~ii~~a~~GgiERlia~L~E~~~g------------~~P~~laP~qV~Vipv~~~ 515 (576)
.|.+.+|+|||++ + |+||++++|+|+... +||+|+||.||+|+|++++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~P~VIepS-~-GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~ 468 (551)
T TIGR00389 391 EVELDKDLVEIEMVTEVVHGEKYIPHVIEPS-F-GIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNK 468 (551)
T ss_pred ceecchhhhhheeeeeccCCcEecceEEEcc-c-CHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCc
Confidence 1567799999998 4 699999999986432 7999999999999999954
Q ss_pred --hHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecceEE
Q 008152 516 --SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLL 566 (576)
Q Consensus 516 --~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~~~ 566 (576)
...+|.+|++.||++|++|++|+++ ++|||+++|++.|+||+|+||+--+
T Consensus 469 ~el~~~A~eIa~~LR~~GI~VeiD~s~-sIGKq~rrADeiGiPf~IIIG~~El 520 (551)
T TIGR00389 469 EELKEIAKEIFQALRKTGIRIKYDDSG-TIGKRYRRADEIGTPFCVTIDFETL 520 (551)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHcCCCEEEEECCchh
Confidence 7889999999999999999999976 5999999999999999999996443
No 20
>PLN02734 glycyl-tRNA synthetase
Probab=99.92 E-value=1.4e-24 Score=240.99 Aligned_cols=264 Identities=18% Similarity=0.215 Sum_probs=164.3
Q ss_pred CCCceeEeccccCChhhhhhhhh-cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHH-HHHHHHHHHH
Q 008152 292 RESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIK-DEVRGVLEFI 369 (576)
Q Consensus 292 ~~~lqRiyg~~fp~~~~L~~s~r-elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~-~e~~~~l~~~ 369 (576)
+++-|-+ |.+=+.|.+..+ .+|++++|+|..||||.+++ +||+|+|||+|.+++.|+.++.-. ..+.++-+..
T Consensus 253 PETAQGi----FvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR-~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~ 327 (684)
T PLN02734 253 PETAQGI----FVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPR-QGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLE 327 (684)
T ss_pred ccccchh----eeeHHHHHHhcCCCCCeeeeeccHhhhcccCcc-cceeeechhhhhhhheecCcccccccchhhhhhhh
Confidence 4555655 344477777766 89999999999999999998 999999999999999999985321 1111222222
Q ss_pred HHHHHH----hCCe-EEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcE------EcCCCCcccccc-eeEEEecc
Q 008152 370 DYAYRI----FGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQ------INEGDGAFYGPK-IDISVSDA 437 (576)
Q Consensus 370 ~~i~~~----lG~~-~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~------~~~g~~afygpk-id~~~~d~ 437 (576)
..+|.+ -|-+ ..+.+....++-+-+++....+......+|.++|++-+ .-+.+-|+|+-. +|+.+...
T Consensus 328 l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~ 407 (684)
T PLN02734 328 FLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECS 407 (684)
T ss_pred hhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecC
Confidence 222211 0111 12222211111112234445555555666666665311 111223444221 23332222
Q ss_pred ccCceecceee----ecccC------------------------------------------------------------
Q 008152 438 LKRKFQCATLQ----LDFQL------------------------------------------------------------ 453 (576)
Q Consensus 438 ~gr~~~~~tiq----ld~~~------------------------------------------------------------ 453 (576)
.| ..+|..+. -|+..
T Consensus 408 ~G-WiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~ 486 (684)
T PLN02734 408 YG-WIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMK 486 (684)
T ss_pred CC-cEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 21 00111110 00000
Q ss_pred ----------------Cceeee-------EEe-ecCCCcccccEEEEecccccHHHHHHHHHHhcC-----C------CC
Q 008152 454 ----------------PDRFNL-------GYS-AEDEAKTERPVMIHRAILGSVERMFAILLEHYK-----G------KW 498 (576)
Q Consensus 454 ----------------~~rf~l-------~y~-~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~-----g------~~ 498 (576)
+..|.+ ... ....|.+-.|.||..+ + |++|++++++||.. + +|
T Consensus 487 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS-~-GIgRIl~AilE~s~~~~~~De~R~~L~~ 564 (684)
T PLN02734 487 AKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPS-F-GIGRIIYCLFEHSFYTRPGDEQLNVFRF 564 (684)
T ss_pred HhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceEecC-c-cHHHHHHHHHHHHhccccCCCcceEEec
Confidence 001100 000 0001345589999998 4 79999999999854 1 69
Q ss_pred CCCCCCceEEEEeCCC--ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 499 PFWLSPRQAIVCPVSE--KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 499 P~~laP~qV~Vipv~~--~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
|+|+||+||.|+|+.. +..++|.+|++.|+++|++|.+|+++.++|+|+++|+++|+||+|+||.
T Consensus 565 Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~ 631 (684)
T PLN02734 565 PPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDS 631 (684)
T ss_pred CcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECC
Confidence 9999999999999974 4678999999999999999999999899999999999999999999996
No 21
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.4e-24 Score=214.08 Aligned_cols=235 Identities=19% Similarity=0.250 Sum_probs=158.7
Q ss_pred hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC
Q 008152 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE 389 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~ 389 (576)
||+++|+++||+|..||+|.+++ .||+|-|||.|+|+|+|.++ +.+.+.|..+.+.|.++|+.+|++ +++...+.
T Consensus 130 sykqlPi~vYQigrKfRDElrpR-fGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG-- 206 (457)
T KOG2324|consen 130 SYKQLPIRVYQIGRKFRDELRPR-FGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKVWADSG-- 206 (457)
T ss_pred ccccCcEEeeeechhhhhccCcc-ccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeccc--
Confidence 79999999999999999999998 99999999999999999999 568888999999999999999999 45555442
Q ss_pred ccCCChHHHHH------HHHHHHHHHHHcCCCcEEcCCC--Cc--ccccceeE-EEe----ccccCceecceeeecccCC
Q 008152 390 KYLGDLATWEK------AEAALTEALNEFGKPWQINEGD--GA--FYGPKIDI-SVS----DALKRKFQCATLQLDFQLP 454 (576)
Q Consensus 390 ~~~G~~~~~~~------a~~~L~~~l~~~~~~~~~~~g~--~a--fygpkid~-~~~----d~~gr~~~~~tiqld~~~~ 454 (576)
.+|..-..+. .|+.| .....+| |..|..+ +. --+|+-.- .+. -+.|+.|-.++ .++
T Consensus 207 -~iGG~vShEfhl~~~vgED~l-~~C~~C~--~s~n~e~~~~sk~~~Cp~C~~~~L~~~~~IEVgHtF~LG~-----kYS 277 (457)
T KOG2324|consen 207 -DIGGEVSHEFHLIHPVGEDTL-MSCPSCG--YSKNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLLGT-----KYS 277 (457)
T ss_pred -ccCceeeeeEeccCccCccce-eecCcCC--ccCchhhhcCCccccCCcccCCCcccccceEEEEEEEecc-----ccc
Confidence 2332100000 00000 0000011 1111110 00 00111110 000 01245555555 367
Q ss_pred ceeeeEEeecCCCcccccEEEEecccc-cHHHHHHHHHHhcC----CCCCCCCCCceEEEEeCC-CChHHHHHHHHHHHH
Q 008152 455 DRFNLGYSAEDEAKTERPVMIHRAILG-SVERMFAILLEHYK----GKWPFWLSPRQAIVCPVS-EKSQPYALQVRDHIY 528 (576)
Q Consensus 455 ~rf~l~y~~~~~g~~~~P~ii~~a~~G-giERlia~L~E~~~----g~~P~~laP~qV~Vipv~-~~~~~~a~~i~~~Lr 528 (576)
..||++|++.. |+.+ ..|++++| ||+|++++.+|... -+||..+||++|++|+.. ......+.+++.+|-
T Consensus 278 ~~lna~f~~~~-gKpe---~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~~~q~~~ev~~el~ 353 (457)
T KOG2324|consen 278 KPLNAKFVNVE-GKPE---FLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSKSQRAQEVISELL 353 (457)
T ss_pred cccCceeeeec-CCcc---eEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCCcchhhhHHHHHHHhh
Confidence 88999987654 4333 33555555 79999999999754 289999999999666554 555667777877664
Q ss_pred hC------CcEEEEeCC-CCcHHHHHHHhHhcCCceEEEec
Q 008152 529 RA------GYYVDVDTT-DRKIQKKVTTSNFEIKNPHYFYC 562 (576)
Q Consensus 529 ~~------Gi~v~vD~~-~~slgkkir~A~~~g~p~~iIiG 562 (576)
.. -=.+..||| ..++|+||++|++.|+||+||+|
T Consensus 354 ~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg 394 (457)
T KOG2324|consen 354 NDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVG 394 (457)
T ss_pred cchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEc
Confidence 32 125778887 58999999999999999999999
No 22
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.90 E-value=9.3e-23 Score=221.44 Aligned_cols=306 Identities=14% Similarity=0.178 Sum_probs=214.1
Q ss_pred HhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccC-cchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccE
Q 008152 199 PDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDN-NFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGF 276 (576)
Q Consensus 199 ~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~-~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f 276 (576)
....+.|++.++++. ..-++.+..|.-|-.++|... |...... .=.+|++ .|. | |.
T Consensus 18 ~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~-------~~~my~~---~d~--~------g~---- 75 (430)
T CHL00201 18 INYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIV-------NKEMYRF---TDR--S------NR---- 75 (430)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCccccc-------ccceEEE---EcC--C------CC----
Confidence 445777888888877 888888888877777776431 1100000 0135553 331 1 21
Q ss_pred EEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCch
Q 008152 277 GCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (576)
Q Consensus 277 ~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~ 356 (576)
-+-|++....++.|++... ..+++++|+|++++|.+||+|+++ .| |.|||+|.|+|+||.++
T Consensus 76 -------~l~LRpd~T~~iaR~~~~~-------~~~~~~~p~R~~y~g~vfR~e~~q--~G--R~Ref~Q~g~EiiG~~~ 137 (430)
T CHL00201 76 -------DITLRPEGTAGIVRAFIEN-------KMDYHSNLQRLWYSGPMFRYERPQ--SG--RQRQFHQLGIEFIGSID 137 (430)
T ss_pred -------EEEeCCCCcHHHHHHHHHc-------cccccCCCeEEEEEcceecCCCCc--CC--ccceeEEeceEEECCCC
Confidence 1235655555666654110 013457899999999999999865 24 99999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC----------------cc---CC---------------------Ch
Q 008152 357 QIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE----------------KY---LG---------------------DL 395 (576)
Q Consensus 357 ~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~----------------~~---~G---------------------~~ 395 (576)
+..| +|++.++.++|+.+|++ +.+.++++.- +. +. +.
T Consensus 138 ~~aD--~Evi~l~~~~l~~lGl~~~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~ 215 (430)
T CHL00201 138 ARAD--TEVIHLAMQIFNELQVKNLILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQ 215 (430)
T ss_pred hhhH--HHHHHHHHHHHHHcCCCceEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHH
Confidence 8777 78999999999999997 9999987321 00 00 00
Q ss_pred HHHHH-----------HHHH---HHHHHHHcCCCcEEcCC---CCccc-ccceeEEEeccccCceecceeeecccCCcee
Q 008152 396 ATWEK-----------AEAA---LTEALNEFGKPWQINEG---DGAFY-GPKIDISVSDALKRKFQCATLQLDFQLPDRF 457 (576)
Q Consensus 396 ~~~~~-----------a~~~---L~~~l~~~~~~~~~~~g---~~afy-gpkid~~~~d~~gr~~~~~tiqld~~~~~rf 457 (576)
+.++. +.+. +.+.|+..|.++.++++ ..+|| |+.+++++.+..+..+.|+ ++||
T Consensus 216 ~~~~~a~~l~~~~~~~~~~~l~~~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~g--------GGRY 287 (430)
T CHL00201 216 EILDGAPKISDFLSLESTEHFYDVCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICG--------GGRY 287 (430)
T ss_pred HHHhhhHHHHhhhhHHHHHHHHHHHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeee--------ccch
Confidence 11111 1122 22455566778888887 34688 6788887765444455544 3677
Q ss_pred eeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEe
Q 008152 458 NLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVD 537 (576)
Q Consensus 458 ~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD 537 (576)
|- +.... |+..+|.+ +.+ +|+||++.+|.+. .. .+..|.+|+|+|++++...+|.+++++||++|++|++|
T Consensus 288 D~-L~~~f-g~~~~Pav-Gfa--~g~erl~~~l~~~--~~--~~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid 358 (430)
T CHL00201 288 DS-LIHQL-GGPKTPAV-GCA--IGLERLLLIAKDN--II--LPKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELD 358 (430)
T ss_pred HH-HHHHh-CCCCCCee-EEE--ecHHHHHHHHhcc--cc--CCCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 72 33333 45678987 444 4899999877652 22 33467899999999888999999999999999999999
Q ss_pred CCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 538 TTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 538 ~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
..+.+++++++.|++.|++|++|+|+
T Consensus 359 ~~~~~l~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 359 LSSSNFHKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred eCCCCHHHHHHHHHHcCCCEEEEEec
Confidence 98899999999999999999999996
No 23
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-21 Score=209.92 Aligned_cols=307 Identities=22% Similarity=0.287 Sum_probs=209.0
Q ss_pred CHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhcc-CcchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCccc
Q 008152 198 NPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSD-NNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG 275 (576)
Q Consensus 198 t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~-~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~ 275 (576)
.....+.|++.++++. ..-|....+|.-|-.++|.. .|.-..++ .=.+|. |.|- .|- .
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v-------~kemY~---F~Dk-ggr---------~ 76 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVV-------EKEMYT---FKDK-GGR---------S 76 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCccccc-------ccceEE---EEeC-CCC---------E
Confidence 4456788999999999 88999999998777777753 12111100 124665 3342 122 1
Q ss_pred EEEEeecceeecCCCCCCCceeEeccccCChhhhhh-hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcC
Q 008152 276 FGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH-AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR 354 (576)
Q Consensus 276 f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~-s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~ 354 (576)
+. |++.-+.++-|.+ ..+ .....|+|++++|++||+|+.. .| |.|||+|+|+++|++
T Consensus 77 la---------LRpe~Tapv~R~~---------~en~~~~~~p~k~yy~g~vfRyErPQ--~G--R~RqF~Q~g~E~iG~ 134 (429)
T COG0124 77 LA---------LRPELTAPVARAV---------AENKLDLPKPLKLYYFGPVFRYERPQ--KG--RYRQFYQFGVEVIGS 134 (429)
T ss_pred EE---------ecccCcHHHHHHH---------HhccccccCCeeEEEecceecCCCCC--CC--CceeeEEcCeEEeCC
Confidence 22 4555455555553 112 1224789999999999999865 35 999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC-----ccCCCh--H----HHHH----------------------
Q 008152 355 ESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE-----KYLGDL--A----TWEK---------------------- 400 (576)
Q Consensus 355 ~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~-----~~~G~~--~----~~~~---------------------- 400 (576)
+++..| +|++.++.++++.||++ +++++|++.. .++|-. + ..++
T Consensus 135 ~~~~~D--AEvi~l~~~~l~~lGi~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~l 212 (429)
T COG0124 135 DSPDAD--AEVIALAVEILEALGIGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPL 212 (429)
T ss_pred CCcccC--HHHHHHHHHHHHHcCCCcEEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchH
Confidence 998777 78999999999999998 9999998641 121110 0 0000
Q ss_pred ----------------H-----------H---HHHHHHHHHcCCCcEEcCCC--C-ccc-ccceeEEEeccccCceecce
Q 008152 401 ----------------A-----------E---AALTEALNEFGKPWQINEGD--G-AFY-GPKIDISVSDALKRKFQCAT 446 (576)
Q Consensus 401 ----------------a-----------~---~~L~~~l~~~~~~~~~~~g~--~-afy-gpkid~~~~d~~gr~~~~~t 446 (576)
| . ..+.++|+.+|.++.+||+- | .|| |+.+++.. +..|. .+|
T Consensus 213 r~ld~k~~~~~~~~~~ap~i~~~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~-~~~~~---~~s 288 (429)
T COG0124 213 RVLDSKKDSDQELLKNAPELLDYLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVT-DGLGA---QGS 288 (429)
T ss_pred HHHHhccchHHHHHhccHHhhhhccHHHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEE-cCCcc---ccc
Confidence 0 0 22345555566666666652 3 255 55555432 22322 123
Q ss_pred eeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCC-CCCceEEEEeCCCChHHHHHHHHH
Q 008152 447 LQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFW-LSPRQAIVCPVSEKSQPYALQVRD 525 (576)
Q Consensus 447 iqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~-laP~qV~Vipv~~~~~~~a~~i~~ 525 (576)
+ ..++|||-.. ..-|+..+|.+ +.++ |+||++.+|.+. |. +.+ -++.+|+|+|+++....+|.++++
T Consensus 289 I----~gGGRYD~Lv--~~~gG~~~pav-GFai--GveRl~~~l~~~--~~-~~~~~~~~~v~v~~~~~~~~~~a~~la~ 356 (429)
T COG0124 289 V----CGGGRYDGLV--EEFGGKPTPAV-GFAI--GVERLILALEEE--GK-EDPVETRVDVYVVPLGEDAEPEALKLAQ 356 (429)
T ss_pred e----ecCccchHHH--HHhCCCCCCce-eEeh--HHHHHHHHHHHc--CC-CCCcCCCCCEEEEEcCchhHHHHHHHHH
Confidence 2 2456665111 11156778886 5554 799999888774 32 222 478899999999988899999999
Q ss_pred HHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 526 HIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 526 ~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
+||++|+.|++|...++++++++.|++.|++|++|+|.-
T Consensus 357 ~LR~~g~~~~~~~~~r~~k~q~k~A~~~g~~~~viiGe~ 395 (429)
T COG0124 357 KLRAAGISVEVDYSGRKLKKQFKYADKLGARFAVILGED 395 (429)
T ss_pred HHHHcCCcEEEEeccccHHHHHHHHHHCCCCEEEEEcch
Confidence 999999999999998889999999999999999999964
No 24
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.5e-22 Score=211.48 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=85.1
Q ss_pred CcccccEEEEecccccHHHHHHHHHHhcC----C-------CCCCCCCCceEEEEeCCC--ChHHHHHHHHHHHHhCCcE
Q 008152 467 AKTERPVMIHRAILGSVERMFAILLEHYK----G-------KWPFWLSPRQAIVCPVSE--KSQPYALQVRDHIYRAGYY 533 (576)
Q Consensus 467 g~~~~P~ii~~a~~GgiERlia~L~E~~~----g-------~~P~~laP~qV~Vipv~~--~~~~~a~~i~~~Lr~~Gi~ 533 (576)
|.+-.|.+|..+. |++|++.+++++.- + ++|+++||++|+|+|+.. +..+.|.+|.+.|++.|+.
T Consensus 411 ~e~~iP~VIEPSf--GidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~ 488 (558)
T COG0423 411 GEKYIPHVIEPSF--GIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFN 488 (558)
T ss_pred CceecCceeccCC--CchHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecccchhHHHHHHHHHHHhcCce
Confidence 3566899999984 69999999998741 2 699999999999999984 4899999999999999999
Q ss_pred EEEeCCCCcHHHHHHHhHhcCCceEEEecceEE
Q 008152 534 VDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLL 566 (576)
Q Consensus 534 v~vD~~~~slgkkir~A~~~g~p~~iIiGp~~~ 566 (576)
|.+|+++ |+|+|++++|.+|+||+|.+=.-.+
T Consensus 489 v~yDdsG-sIGrRYrR~DEIGtPfcVTvD~eTl 520 (558)
T COG0423 489 VDYDDSG-SIGRRYRRQDEIGTPFCVTVDFETL 520 (558)
T ss_pred EEecCCC-cHhhhhhhccccCCceEEEecCCcc
Confidence 9999985 9999999999999999998865443
No 25
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.6e-20 Score=200.85 Aligned_cols=248 Identities=20% Similarity=0.258 Sum_probs=167.7
Q ss_pred hhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCeEEEEEccC
Q 008152 309 LKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTR 387 (576)
Q Consensus 309 L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr 387 (576)
--.||++||+++||+..+||+|.+++ .||+|.|||+|+|+|+|+.+ +++++++..+++.|.++|.++|+.+..+..+.
T Consensus 121 ~i~SYkdLPl~lYQi~~kfRdE~rpr-~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~ 199 (500)
T COG0442 121 WIRSYKDLPLKLYQIQSKFRDEKRPR-FGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPADE 199 (500)
T ss_pred HhhhhhhCCcceeeeeeEEeccccCC-CCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCceEEeecccC
Confidence 34599999999999999999999987 99999999999999999999 78999999999999999999998866555432
Q ss_pred CCccCCChHHHHH-----------------HHHHHHHHHHHcCCCcEE--------------------------cCCC-C
Q 008152 388 PEKYLGDLATWEK-----------------AEAALTEALNEFGKPWQI--------------------------NEGD-G 423 (576)
Q Consensus 388 ~~~~~G~~~~~~~-----------------a~~~L~~~l~~~~~~~~~--------------------------~~g~-~ 423 (576)
+++|...+++- +-+.+..+. . ...++- -.|| .
T Consensus 200 --g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~-~-~~~~~~~~~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~ 275 (500)
T COG0442 200 --GFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAF-I-DIKFEDEEEGELEYVHTTSYGISTRIIGAAILIHGDNE 275 (500)
T ss_pred --CCCCCccceEEEEEccCCCccEEEEecchHHhHHHhc-c-CCCccccccccceEecccceEEEeeeeeEEEEEecCCC
Confidence 45544321100 111122221 0 111000 0121 1
Q ss_pred ccccccee--EE-------Ee----------------------------c-c--c--cCc---eeccee----eecccCC
Q 008152 424 AFYGPKID--IS-------VS----------------------------D-A--L--KRK---FQCATL----QLDFQLP 454 (576)
Q Consensus 424 afygpkid--~~-------~~----------------------------d-~--~--gr~---~~~~ti----qld~~~~ 454 (576)
.+.+|++. .+ +. | . . |.. |+.--+ +|.-...
T Consensus 276 G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kys 355 (500)
T COG0442 276 GLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYS 355 (500)
T ss_pred CccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEECchhh
Confidence 12233210 00 00 1 0 0 110 000000 1222233
Q ss_pred ceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcC---C-CCCCCCCCceEEEEeCCCC---hHHHHHHHHHHH
Q 008152 455 DRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPRQAIVCPVSEK---SQPYALQVRDHI 527 (576)
Q Consensus 455 ~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~laP~qV~Vipv~~~---~~~~a~~i~~~L 527 (576)
..+++++.+.+ | ...|..+++... |++|++++++|+.+ | .||..++|+++.|++++.. ....|.+++..|
T Consensus 356 e~~~a~v~~r~-g-~~~~~~mg~ygi-gvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l 432 (500)
T COG0442 356 EAMNATVLDRD-G-KEQPKTMGCYGI-GVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVEL 432 (500)
T ss_pred hhCeeEEEecC-C-CccceEEEehhh-hhhhHHHHHHHHhcccccCccccccCcceeEEEEcCchhHHHHHHhhhHHHHH
Confidence 44567777666 4 344565566655 69998889888865 3 7998889999999999852 344567788889
Q ss_pred HhCC-cEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 528 YRAG-YYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 528 r~~G-i~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
...| ..|.+|+++.+.|.|+++|+++|+||.+++|+-
T Consensus 433 ~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~ 470 (500)
T COG0442 433 PWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR 470 (500)
T ss_pred HhCCchhhhhhhhccccCccccCCeEecccceeeeccc
Confidence 9999 999999999999999999999999999998854
No 26
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-20 Score=194.47 Aligned_cols=224 Identities=20% Similarity=0.288 Sum_probs=170.4
Q ss_pred hhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHHHHHHHHHHHh-CCeEEEEE
Q 008152 307 KRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKL 384 (576)
Q Consensus 307 ~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l~~~~~i~~~l-G~~~~l~l 384 (576)
.+--+|||+||+++.|+..+-|.|.++. ..++|.|||.+.+.|+ |.+++.+++|+..+++++..+|..+ .+++.---
T Consensus 175 akWi~ShRDLPlkLNQW~nVvRWEfk~p-~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGr 253 (551)
T KOG4163|consen 175 AKWIQSHRDLPLKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGR 253 (551)
T ss_pred HHHHHhhccCchhhhhhhhheeeeccCC-CcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccccccCc
Confidence 3444599999999999999999999865 7999999999999999 5666999999999999999999765 44421100
Q ss_pred ccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceee-ecccCCceeeeEEee
Q 008152 385 STRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSA 463 (576)
Q Consensus 385 str~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq-ld~~~~~rf~l~y~~ 463 (576)
.+..++|- |+-|-..++.++ ...||..|.+|.+ |..+.+..|++.|.+
T Consensus 254 Kse~EkFa------------------------------Ggd~TttvEa~i-~~~GrgiQgaTSH~LGQNFSkmF~i~~ed 302 (551)
T KOG4163|consen 254 KSEKEKFA------------------------------GGDYTTTVEAFI-PCSGRGIQGATSHHLGQNFSKMFEIVFED 302 (551)
T ss_pred cchhhhcc------------------------------CCcceEEEeeee-ccccccccccchhhhhHHHHHhhceeecC
Confidence 00001111 122223344333 3468889988875 666778889999966
Q ss_pred cCCCcccccEEEEecccccHHHHHHHHHHhcC---C-CCCCCCCCceEEEEeCCC----------ChHHHHHHHHHHHHh
Q 008152 464 EDEAKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPRQAIVCPVSE----------KSQPYALQVRDHIYR 529 (576)
Q Consensus 464 ~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~laP~qV~Vipv~~----------~~~~~a~~i~~~Lr~ 529 (576)
+ +...+-++ ...++|=.+|.|++++..++ | .+|+.+||.||.|||++- ...+++..+...|..
T Consensus 303 ~--~~g~~~fv-~QnSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~ 379 (551)
T KOG4163|consen 303 P--GEGEKEFV-WQNSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLG 379 (551)
T ss_pred C--Cccchhhe-eecccccccceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhc
Confidence 5 22234444 55668878999999888765 2 799999999999999971 246789999999999
Q ss_pred CCcEEEEeCCC-CcHHHHHHHhHhcCCceEEEecceEEEEcCCc
Q 008152 530 AGYYVDVDTTD-RKIQKKVTTSNFEIKNPHYFYCPMLLVILPTV 572 (576)
Q Consensus 530 ~Gi~v~vD~~~-~slgkkir~A~~~g~p~~iIiGp~~~~~g~~~ 572 (576)
+|+|+..|++| .|.|.||...++.|+ |+||.+||+.
T Consensus 380 ~giR~~~D~rDnytpGwKfnhwElkGV-------PlRiEiGPrD 416 (551)
T KOG4163|consen 380 AGIRAEADLRDNYTPGWKFNHWELKGV-------PLRIEIGPRD 416 (551)
T ss_pred cCceEeecccccCCCCccccceeecCc-------eeEEEeccch
Confidence 99999999984 899999999999999 7777777764
No 27
>PLN02530 histidine-tRNA ligase
Probab=99.80 E-value=4.3e-18 Score=187.65 Aligned_cols=303 Identities=18% Similarity=0.138 Sum_probs=197.8
Q ss_pred HhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccC-cchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccE
Q 008152 199 PDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDN-NFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGF 276 (576)
Q Consensus 199 ~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~-~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f 276 (576)
......|++.+.++. ..-++....|.-|-.++|... +.. ..=.+|+ |.|- | |.
T Consensus 84 ~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~----------~~~~~y~---f~D~--~------g~---- 138 (487)
T PLN02530 84 MRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEE----------ITDQLYN---FEDK--G------GR---- 138 (487)
T ss_pred HHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcc----------cccceEE---EECC--C------CC----
Confidence 455778888888888 888999999888878877542 110 0113665 3331 1 11
Q ss_pred EEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCch
Q 008152 277 GCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES 356 (576)
Q Consensus 277 ~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~ 356 (576)
-..|++....++.|++.... ....+|+|++++|++||+++.. .| |.|||+|.|+|+||.++
T Consensus 139 -------~l~LRpD~T~~iaR~~~~~~--------~~~~~P~r~~y~g~vfR~e~~q--~g--r~REf~Q~giEiiG~~~ 199 (487)
T PLN02530 139 -------RVALRPELTPSLARLVLQKG--------KSLSLPLKWFAIGQCWRYERMT--RG--RRREHYQWNMDIIGVPG 199 (487)
T ss_pred -------EEecCCCCcHHHHHHHHhcc--------cccCCCeEEEEEcCEEcCcCCC--CC--CccceEEcCeeEeCCCC
Confidence 12355544555555531100 1125799999999999999754 24 89999999999999997
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCe---EEEEEccCCC-----ccCCC-hHH----------HHH-HHHHHH----------
Q 008152 357 QIKDEVRGVLEFIDYAYRIFGFT---YELKLSTRPE-----KYLGD-LAT----------WEK-AEAALT---------- 406 (576)
Q Consensus 357 ~~~~e~~~~l~~~~~i~~~lG~~---~~l~lstr~~-----~~~G~-~~~----------~~~-a~~~L~---------- 406 (576)
+..| +|++.++.++++.||++ +.+.++++.- ..+|. .+. .++ ....++
T Consensus 200 ~~aD--aEvi~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~ 277 (487)
T PLN02530 200 VEAE--AELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSE 277 (487)
T ss_pred cchh--HHHHHHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCH
Confidence 7555 67999999999999994 8999988620 00110 000 000 001111
Q ss_pred ------------------------------------HHHHHcCCC--cEEcCCC--C-ccc-ccceeEEEeccccCceec
Q 008152 407 ------------------------------------EALNEFGKP--WQINEGD--G-AFY-GPKIDISVSDALKRKFQC 444 (576)
Q Consensus 407 ------------------------------------~~l~~~~~~--~~~~~g~--~-afy-gpkid~~~~d~~gr~~~~ 444 (576)
+.|+.+|.. +.++++. | .|| |..++.+..+ |..
T Consensus 278 ~~~~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~--~~~--- 352 (487)
T PLN02530 278 EAIEGILDVLSLKSLDDLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRA--GKL--- 352 (487)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecC--CCc---
Confidence 222233332 3344432 1 244 4433322211 110
Q ss_pred ceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHH
Q 008152 445 ATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVR 524 (576)
Q Consensus 445 ~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~ 524 (576)
.++ -.++|||-... .- |+...|.+ +.|+ |++|++.++.+ .|.+|.|.+|.||+|+|++++...+|.+++
T Consensus 353 ~~I----~gGGRYD~Li~-~f-gg~~~pAv-GFa~--g~~~l~~~l~~--~g~~p~~~~~~dVlVi~~~~~~~~~A~~ia 421 (487)
T PLN02530 353 RAI----CGGGRYDRLLS-TF-GGEDTPAC-GFGF--GDAVIVELLKE--KGLLPELPHQVDDVVFALDEDLQGAAAGVA 421 (487)
T ss_pred cee----eecccHHHHHH-Hh-CCCCCCee-EEEE--hHHHHHHHHHh--cCCCCCCCCCCcEEEEEcChHHHHHHHHHH
Confidence 111 23456652110 00 33567876 6653 59998876654 467899999999999999999899999999
Q ss_pred HHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 525 DHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 525 ~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
++||++|++|++|..+.+++++++.|++.|++|++|+|.
T Consensus 422 ~~LR~~Gi~vevd~~~~~l~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 422 SRLREKGRSVDLVLEPKKLKWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred HHHHHCCCeEEEecCCCCHHHHHHHHHHCCCCEEEEEch
Confidence 999999999999998889999999999999999999996
No 28
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.80 E-value=1.3e-19 Score=184.52 Aligned_cols=145 Identities=22% Similarity=0.360 Sum_probs=120.4
Q ss_pred hhhhcCCeeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHHHHHHHHHHHh-CCeEEEEEccCC
Q 008152 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKLSTRP 388 (576)
Q Consensus 311 ~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l~~~~~i~~~l-G~~~~l~lstr~ 388 (576)
.||++||+++++++.+||+|.+++ .||+|+|||+|+|+|+ ||+++++.+|+.++++++.++|+.| |+++.+......
T Consensus 113 ~s~r~LPlr~~~~~~~fR~E~~~~-~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~ 191 (261)
T cd00778 113 RSYRDLPLKINQWVNVFRWETKTT-RPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEW 191 (261)
T ss_pred cchhhcCHHHHhhhhhccCCCCCC-CceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcc
Confidence 378999999999999999999988 8999999999999996 7888999999999999999999999 999766653222
Q ss_pred CccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceeccee-eecccCCceeeeEEeecCCC
Q 008152 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATL-QLDFQLPDRFNLGYSAEDEA 467 (576)
Q Consensus 389 ~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~ti-qld~~~~~rf~l~y~~~~~g 467 (576)
+++. ++.+..+++..+. .|+.||++++ |+|+.++.|||++|.+++ |
T Consensus 192 d~~~------------------------------~a~~~~~ie~~~p--~~~~~ev~s~~~l~~~~s~r~~i~y~~~~-g 238 (261)
T cd00778 192 EKFA------------------------------GADYTYTIEAMMP--DGRALQSGTSHNLGQNFSKAFDIKYQDKD-G 238 (261)
T ss_pred ccCC------------------------------CCccceEEEEEee--CCCEEEEEeccccccccchhcCCEEECCC-C
Confidence 2222 2333345666655 6999999999 799999999999998776 5
Q ss_pred cccccEEEEecccccHHHHHHHHHH
Q 008152 468 KTERPVMIHRAILGSVERMFAILLE 492 (576)
Q Consensus 468 ~~~~P~ii~~a~~GgiERlia~L~E 492 (576)
+.+.| |++++|+.+|+|++|+.
T Consensus 239 ~~~~~---h~~~~g~~~R~i~ali~ 260 (261)
T cd00778 239 QKEYV---HQTSWGISTRLIGAIIM 260 (261)
T ss_pred CCcCc---EEecccHHHHHHHHHHh
Confidence 55554 78999988999999874
No 29
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.79 E-value=3.9e-18 Score=184.61 Aligned_cols=300 Identities=19% Similarity=0.265 Sum_probs=198.3
Q ss_pred CHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccC-cchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCccc
Q 008152 198 NPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDN-NFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG 275 (576)
Q Consensus 198 t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~-~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~ 275 (576)
.....+.|++.+.++. ..-++....|.-|-.++|... +.... . ..=.+|+. .|- +|.
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~----~---~~~~~~~~---~d~--------~g~--- 75 (412)
T PRK00037 17 ESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETD----I---VEKEMYTF---QDK--------GGR--- 75 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccc----c---ccceeEEE---EcC--------CCC---
Confidence 3455677777777777 888888888877776766431 11000 0 01124442 221 111
Q ss_pred EEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCc
Q 008152 276 FGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (576)
Q Consensus 276 f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~ 355 (576)
-+.|++....+..|++ ... ..+|+|++++|.+||++.++. | |.|||+|.|+|+||.+
T Consensus 76 --------~l~LRpd~T~~~ar~~----------~~~-~~~p~r~~~~g~vfR~e~~~~--g--r~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 76 --------SLTLRPEGTAPVVRAV----------IEH-KLQPFKLYYIGPMFRYERPQK--G--RYRQFHQFGVEVIGSD 132 (412)
T ss_pred --------EEEecCCCcHHHHHHH----------HhC-CCCCeEEEEEcCccccCCCCC--C--cccceEEcCeeeeCCC
Confidence 1223332222333321 111 128999999999999997663 4 8999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC------------ccC----------------------------CC
Q 008152 356 SQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE------------KYL----------------------------GD 394 (576)
Q Consensus 356 ~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~------------~~~----------------------------G~ 394 (576)
++..+ ++++.++.++++.||++ +.+.++.... +.+ |.
T Consensus 133 ~~~~d--~E~i~~~~~~l~~lg~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 210 (412)
T PRK00037 133 SPLAD--AEVIALAADILKALGLKGLKLLINSLGDFEIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKKDKED 210 (412)
T ss_pred Ccchh--HHHHHHHHHHHHHcCCCceeeeeccCCCHHHhHHHHHHHHHHHHhCchhhchHHHHHHhhCchhhhcccchhh
Confidence 76443 56889999999999997 6665442210 000 11
Q ss_pred hHHHHH--------------HHHHHHHHHHHcCCCcEEcCCC---Cccc-ccceeEEEeccccCceecceeeecccCCce
Q 008152 395 LATWEK--------------AEAALTEALNEFGKPWQINEGD---GAFY-GPKIDISVSDALKRKFQCATLQLDFQLPDR 456 (576)
Q Consensus 395 ~~~~~~--------------a~~~L~~~l~~~~~~~~~~~g~---~afy-gpkid~~~~d~~gr~~~~~tiqld~~~~~r 456 (576)
.+.++. +.+.|.+.|+.++.++.++++. -.|| |+.++.+. +..|.. .++ ..++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~-~~~g~~---~~i----~~GGR 282 (412)
T PRK00037 211 QELLKDAPKLLDYLDEESKEHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVT-DDLGAQ---GTV----CGGGR 282 (412)
T ss_pred HHHHhcchHHHHHhhHHHHHHHHHHHHHHHHcCCCEEECCCcccChhhccceEEEEEE-CCCCcc---cee----eeccc
Confidence 111211 1133556666677778888874 3467 89887765 333431 222 34677
Q ss_pred eeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEE
Q 008152 457 FNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDV 536 (576)
Q Consensus 457 f~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~v 536 (576)
||-.. ..- |+...|.+ +.+ .|+||+++++.++.. +|.||.|+|++++..++|.++++.||++|++|++
T Consensus 283 YD~L~-~~f-~~~~~pav-Gfs--~~le~l~~~l~~~~~-------~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i 350 (412)
T PRK00037 283 YDGLV-EQF-GGPPTPAV-GFA--IGVERLLLLLEELGE-------EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVEL 350 (412)
T ss_pred hhHHH-HHh-CCCCCceE-EEE--EcHHHHHHHHHhcCC-------CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE
Confidence 77321 111 33467876 443 489999999988631 8899999999987788999999999999999999
Q ss_pred eCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 537 DTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 537 D~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
|..+.+++++++.|++.|+|+++++|+
T Consensus 351 ~~~~~~~~~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 351 DYGGRKLKKQFKYADKSGARFVLILGE 377 (412)
T ss_pred eCCCCCHHHHHHHHHHcCCCEEEEECh
Confidence 998789999999999999999999997
No 30
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.76 E-value=3.2e-18 Score=170.84 Aligned_cols=152 Identities=26% Similarity=0.284 Sum_probs=129.8
Q ss_pred hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCcc
Q 008152 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKY 391 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~~ 391 (576)
+|+++|++++++|.+||+|.+++ .|+.|+|||+|.|+|+||.+++..++..++++++.++++.+|+++++.+++++...
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~-~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~~~~~~~~~ 161 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPFFG 161 (235)
T ss_pred cchhcCeeeeeecccccCCCCCC-CCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEccChhhc
Confidence 56789999999999999999887 88999999999999999999888888899999999999999999999998765332
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccc-cCceecceeeecccCCceeeeEEeecCCCccc
Q 008152 392 LGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDAL-KRKFQCATLQLDFQLPDRFNLGYSAEDEAKTE 470 (576)
Q Consensus 392 ~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~-gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~ 470 (576)
.+.. +|.++++++++|+.+.+.. |+.+++++.+.++.++.++...+.+++ |+..
T Consensus 162 ~~~~------------------------~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (235)
T cd00670 162 RGGK------------------------RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDED-GGGR 216 (235)
T ss_pred cCCc------------------------cccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccC-CCce
Confidence 2221 4555677999999999988 899999999999988888777776655 5667
Q ss_pred ccEEEEecccccHHHHHHHHH
Q 008152 471 RPVMIHRAILGSVERMFAILL 491 (576)
Q Consensus 471 ~P~ii~~a~~GgiERlia~L~ 491 (576)
.|++++++ ||+||++++|+
T Consensus 217 ~~~~~~~~--~~~eR~l~all 235 (235)
T cd00670 217 AHTGCGGA--GGEERLVLALL 235 (235)
T ss_pred eeEEEeCc--cHHHHHHHHHC
Confidence 89999888 68999998874
No 31
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.74 E-value=1.5e-16 Score=171.39 Aligned_cols=306 Identities=20% Similarity=0.282 Sum_probs=195.4
Q ss_pred CHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccC-cchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCccc
Q 008152 198 NPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDN-NFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG 275 (576)
Q Consensus 198 t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~-~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~ 275 (576)
.....+.|++.+.++. +.-++....|.-|-.+.|... +...+.+. =.+|+ |.|. . |
T Consensus 13 ~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~-------~~~~~---~~d~-~-------g---- 70 (397)
T TIGR00442 13 EMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVE-------KEMYT---FKDK-G-------G---- 70 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccc-------cceEE---EECC-C-------C----
Confidence 3455677777777777 888888877776666665431 11100000 11333 1221 1 1
Q ss_pred EEEEeecceeecCCCCCCCceeEeccccCChhhhhh--hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEc
Q 008152 276 FGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH--AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFC 353 (576)
Q Consensus 276 f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~--s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~ 353 (576)
.-+.|++....+..|++ .. .++.+|+|++++|.+||++.++. | |.|||+|.|+|+||
T Consensus 71 -------~~l~LRpD~T~~iaR~~----------~~~~~~~~~p~r~~y~g~vfR~e~~~~--g--r~ref~Q~g~eiig 129 (397)
T TIGR00442 71 -------RSLTLRPEGTAPVARAV----------IENKLLLPKPFKLYYIGPMFRYERPQK--G--RYRQFHQFGVEVIG 129 (397)
T ss_pred -------CEEeecCCCcHHHHHHH----------HhcccccCCCeEEEEEcCeecCCCCCC--C--cccceEEcCeeeeC
Confidence 11224433333333332 11 23467999999999999997653 3 89999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC----------------c---cCCChHH--HH------------
Q 008152 354 RESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE----------------K---YLGDLAT--WE------------ 399 (576)
Q Consensus 354 ~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~----------------~---~~G~~~~--~~------------ 399 (576)
.+++..+ ++++.++.++++.+|++ +.+.++++.- + .++.... +.
T Consensus 130 ~~~~~~d--~E~i~l~~e~l~~lg~~~~~i~i~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (397)
T TIGR00442 130 SDSPLAD--AEIIALAAEILKELGIKDFTLEINSLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNE 207 (397)
T ss_pred CCCHHHH--HHHHHHHHHHHHHcCCCceEEEecCcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhH
Confidence 9977655 68999999999999997 9999988631 0 0111000 00
Q ss_pred ------------------HHH---HHHHHHHHHcCCCcEEcCCC---Cccc-ccceeEEEeccccCceecceeeecccCC
Q 008152 400 ------------------KAE---AALTEALNEFGKPWQINEGD---GAFY-GPKIDISVSDALKRKFQCATLQLDFQLP 454 (576)
Q Consensus 400 ------------------~a~---~~L~~~l~~~~~~~~~~~g~---~afy-gpkid~~~~d~~gr~~~~~tiqld~~~~ 454 (576)
.+. +.+.+.|+.+|+.+.++++. -.|| |..+++++. ..|.. ..+ -.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~-~~~~~---~~i----~~G 279 (397)
T TIGR00442 208 KIQELLKEAPKILDFLDEESRAHFEELKELLDALGIPYKIDPSLVRGLDYYTGTVFEFVTD-ELGAQ---GTI----CGG 279 (397)
T ss_pred HHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEECCccccCchhhcceEEEEEEC-CCCcc---cee----eec
Confidence 000 11223333345555555542 2355 554444432 12210 111 234
Q ss_pred ceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEE
Q 008152 455 DRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYV 534 (576)
Q Consensus 455 ~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v 534 (576)
+|||-... .- |+...|.+ +.+ .++||+++++.+. |.+|.|.+|.+|.|++++++...++.+++++||++|++|
T Consensus 280 GRYD~L~~-~f-~~~~~~av-Gfs--~~~~~l~~~l~~~--~~~~~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v 352 (397)
T TIGR00442 280 GRYDGLVE-EL-GGPPTPAV-GFA--IGIERLLLLLEEL--GLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRV 352 (397)
T ss_pred cchHHHHH-Hh-CCCCCceE-Eee--ecHHHHHHHHHhc--CCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeE
Confidence 56652110 00 22456765 444 3799999888773 677878899999999999888889999999999999999
Q ss_pred EEeCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 535 DVDTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 535 ~vD~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
+++....+++++++.|+..|+++++++|+
T Consensus 353 ~~~~~~~~l~k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 353 EVDLGGRKLKKQLKYADKLGARFAVILGE 381 (397)
T ss_pred EEeCCCCCHHHHHHHHHHcCCCEEEEECh
Confidence 99988889999999999999999999996
No 32
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.70 E-value=1.5e-16 Score=175.89 Aligned_cols=135 Identities=19% Similarity=0.309 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeE-EecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHH
Q 008152 151 RDTFWHSSAHILGQAIEQQYGCKL-CIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQA 227 (576)
Q Consensus 151 ~~vy~hS~ahlL~~A~~~~fg~~l-~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA 227 (576)
.-+.|||++|||.+|++++||.++ ..|..+. .+++||||.. ..++|++++++||++|+++| +.||+..+++++||
T Consensus 452 ~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~-~d~~r~DF~~-~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA 529 (594)
T PRK01584 452 ETTKLHTATHLLHKALRLVLGDHVRQKGSNIT-AERLRFDFSH-PEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEA 529 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccceeecCCcC-CCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHH
Confidence 456799999999999999998765 4565553 2899999986 45799999999999999999 99999999999999
Q ss_pred HHhhccCcchhhhcccCCCCCcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEec
Q 008152 228 LEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYG 300 (576)
Q Consensus 228 ~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg 300 (576)
++++.. .++... -++.|+||++|++ +++|+||||+|||+|+.|+|++.++ ......||.+
T Consensus 530 ~~~~~~-----~lf~e~-y~~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~s-------~g~GvrRI~a 590 (594)
T PRK01584 530 REKGAM-----ALFGEK-YEDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQS-------SSSGVRRIRA 590 (594)
T ss_pred Hhcchh-----hhcccc-CCCcEEEEEECCeeeeCCCCCCCCCcccCceEEEEeccc-------ccCCeEEEEE
Confidence 986432 233221 2467999999998 8999999999999999999998764 1345556653
No 33
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.63 E-value=8e-15 Score=149.51 Aligned_cols=236 Identities=14% Similarity=0.150 Sum_probs=148.9
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|++ ++. +....-+++|++.+++.. +.-++...+|.-+-.++|+..+.-.... + + .+|...+-
T Consensus 22 ~G~~-~~l----P~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~----~-~--e~~~~~~~---- 85 (264)
T cd00772 22 RGII-NFL----PLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGF----S-K--ELAVFKDA---- 85 (264)
T ss_pred CCEE-EEC----CcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCccccc----C-c--cceEEEeC----
Confidence 6875 553 345667888999998888 7777777777655555554322110000 0 1 12322110
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
.|- . ....++|++.....+.+++ ..--.+|++||+++++++.+||+|.++. .||+|+|
T Consensus 86 ~~~------~--------~~~~l~LrPt~e~~~~~~~-------~~~i~s~~~LPlrl~~~~~~fR~E~r~~-~Gl~R~r 143 (264)
T cd00772 86 GDE------E--------LEEDFALRPTLEENIGEIA-------AKFIKSWKDLPQHLNQIGNKFRDEIRPR-FGFLRAR 143 (264)
T ss_pred CCC------c--------cCceEEECCCCCHHHHHHH-------HhhhhhhhccCeeEEEEeCeEeCcCCCC-CCcceee
Confidence 000 0 0123556544433333332 1112368899999999999999998775 8999999
Q ss_pred cccccCeeEE-cCchhHHHHHHHHHHHHHHHHHHhC-CeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcC
Q 008152 343 RFQQDDAHIF-CRESQIKDEVRGVLEFIDYAYRIFG-FTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINE 420 (576)
Q Consensus 343 eF~q~da~iF-~~~~~~~~e~~~~l~~~~~i~~~lG-~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~ 420 (576)
||+|.|+|+| ++++++++|+..+++++.++|+.|| +++.+...+++++++|...+
T Consensus 144 eF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~----------------------- 200 (264)
T cd00772 144 EFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKS----------------------- 200 (264)
T ss_pred EEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCC-----------------------
Confidence 9999999999 5668999999999999999999999 89999998887766665422
Q ss_pred CCCcccccceeEEEeccccCceecceee-ecccCCceee--eEEeecCCCcccccEEEEecccc-cHHHHHHHHHHh
Q 008152 421 GDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFN--LGYSAEDEAKTERPVMIHRAILG-SVERMFAILLEH 493 (576)
Q Consensus 421 g~~afygpkid~~~~d~~gr~~~~~tiq-ld~~~~~rf~--l~y~~~~~g~~~~P~ii~~a~~G-giERlia~L~E~ 493 (576)
.|+++....|+.-+..+.. +......+++ ++|.+++ |+...+ |..++| |+.|+|++++|+
T Consensus 201 ---------~d~e~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~---~~n~~gi~~~R~l~aile~ 264 (264)
T cd00772 201 ---------REFEALMEDGKAKQAETGHIFGEGFARAFDLKAKFLDKD-GKEKFF---EMGCWGIGISRFIGAIIEQ 264 (264)
T ss_pred ---------EEEEEECCCCCEeEEEeeeeccCCchhhcCCccEEECCC-CCEEEE---EeccccchHHHHHHHhhcC
Confidence 2333333334433332221 1112344445 9998655 544444 444454 799999999984
No 34
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.62 E-value=6.3e-15 Score=170.88 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=130.5
Q ss_pred EEeecCCCCHHHHHhhhccccccceEEE-EECCEEeec---cc-cccCCCcEEE-eecCChhhhHHHHHHHHHHHHHHHH
Q 008152 94 KEGKRWETSPMDIAQGISKSLAANALIS-MVNGVLWDM---TR-PLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIE 167 (576)
Q Consensus 94 ~~~~~~~ttp~dia~~i~~~~~~~~v~a-~Vng~l~dL---~~-~l~~d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A~~ 167 (576)
..|+.+|..|.|...-......-.++-+ +.+|.++.. .. ++.....|+. ||++... ..+.+||++|||.+|++
T Consensus 493 ~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~-~~m~~HTAtHLL~aAL~ 571 (851)
T TIGR00344 493 PFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGEVEGGSLKVGDKVIAVIDEKRRL-RIMRNHSATHLLHAALQ 571 (851)
T ss_pred CCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEEeccCCCCCCCEEEEEEcHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3455567777776544321111122222 257877755 22 4554555664 6655441 33569999999999999
Q ss_pred HHhCCeEEe-cCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhcccC
Q 008152 168 QQYGCKLCI-GPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDL 244 (576)
Q Consensus 168 ~~fg~~l~i-g~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~ 244 (576)
++||.++.. |..++ .+++|+||.. ..++|++++.+||++||++| ++||+..+++++||.+++.. .++...
T Consensus 572 ~vlg~~v~q~Gs~v~-~d~~r~Df~~-~~~lt~eel~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~-----~~~~e~ 644 (851)
T TIGR00344 572 KVLGNHVWQAGSLVS-VKKLRFDFSH-YRALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAF-----ALFGEK 644 (851)
T ss_pred HHhCCceEeccCccc-CCcEEEEecC-CCCCCHHHHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcchh-----hhcCCC
Confidence 999987754 33333 3899999986 45799999999999999999 99999999999999997643 222221
Q ss_pred CCCCcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecc
Q 008152 245 PADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 245 ~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
-++.|+|+++|++ ++.|+||||+|||+|+.|+|++.++
T Consensus 645 -y~~~VRVV~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~~ 683 (851)
T TIGR00344 645 -YGEKVRVVSVGDVSVELCGGTHVRNTGEIGLFKIVKESG 683 (851)
T ss_pred -CCCeEEEEEECCeeccCCCCCccCChhhCeEEEEEEEeE
Confidence 1367999999995 6899999999999999999998763
No 35
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.61 E-value=2.2e-15 Score=156.21 Aligned_cols=162 Identities=24% Similarity=0.391 Sum_probs=108.7
Q ss_pred hhhcCCeeeeeeccceecccc---CCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEE-ccC
Q 008152 312 AFAELPLRLADFGVLHRNEAS---GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKL-STR 387 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~---g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~l-str 387 (576)
+|+++|++++++|.+||+|.+ +.+.||+|+|||+|.|+|+||+++++.+++.++++++.++|++||+++.+.. +++
T Consensus 126 s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~ 205 (297)
T cd00770 126 EEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTG 205 (297)
T ss_pred CHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCc
Confidence 789999999999999999987 4579999999999999999999999999999999999999999999966554 332
Q ss_pred CCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCC
Q 008152 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (576)
Q Consensus 388 ~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g 467 (576)
.+|..... ++.+.. ..|+.+.+ .++ ..|.. ..||+ +.|+++.|.+.++|
T Consensus 206 ---dl~~~~~~------------~~d~e~-~~p~~~~~------~e~-------~s~s~-~~d~~-s~r~~i~y~~~~~~ 254 (297)
T cd00770 206 ---DLGFAAAK------------KYDIEA-WMPGQGKY------REI-------SSCSN-CTDFQ-ARRLNIRYRDKKDG 254 (297)
T ss_pred ---cccCchhh------------heeehe-ecCCCCCe------EEE-------EEccC-ccChh-hhhcCcEEecCCCC
Confidence 22222110 000000 01111110 000 11111 14554 58999999876324
Q ss_pred cccccEEEEecccccHHHHHHHHHHhcC---C-CCC-CCCCCc
Q 008152 468 KTERPVMIHRAILGSVERMFAILLEHYK---G-KWP-FWLSPR 505 (576)
Q Consensus 468 ~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P-~~laP~ 505 (576)
+...+.++....+ |++|++++|+|++. | .|| ..|+|+
T Consensus 255 ~~~~~~~~~~~~~-~~~R~l~alle~~~~~~g~v~~P~~l~py 296 (297)
T cd00770 255 KKQYVHTLNGTAL-ATPRTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred CeeeeeEecccch-HHHHHHHHHHHhCcCCCCcEeCchhhccc
Confidence 4444444333333 69999999999974 4 466 455664
No 36
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=8.3e-15 Score=170.54 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=129.6
Q ss_pred EeecCCCCHHHHHhhhccccccceEEEE-E-CCEEeecc----ccccCCCcEEE-eecCChhhhHHHHHHHHHHHHHHHH
Q 008152 95 EGKRWETSPMDIAQGISKSLAANALISM-V-NGVLWDMT----RPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIE 167 (576)
Q Consensus 95 ~~~~~~ttp~dia~~i~~~~~~~~v~a~-V-ng~l~dL~----~~l~~d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A~~ 167 (576)
.++.+|..|.|...-.. ...-.++-++ . +|.++..- .++.....|+. ||++.+. ..+.+||++|||.+|++
T Consensus 487 FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i~H~~~~~~~~l~~G~~V~~~ID~~rR~-~~m~~HTa~HLL~~al~ 564 (865)
T PRK00252 487 FYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLIVHRGKVEEGELKVGDEVTAEVDEERRR-AIARNHSATHLLHAALR 564 (865)
T ss_pred CCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEEEEEEEeccCCCCCCCEEEEEEcHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45556666776554322 1112233232 3 77777543 34555555664 7766552 33569999999999999
Q ss_pred HHhCCeEE-ecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhcccC
Q 008152 168 QQYGCKLC-IGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDL 244 (576)
Q Consensus 168 ~~fg~~l~-ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~ 244 (576)
++||.++. .|..++ .+++++||.. ..++|++++.+||++||++| ++||+..+++++||.++.. ..++...
T Consensus 565 ~~lg~~v~q~Gs~~~-~~~~r~Df~~-~~~lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~-----~~~~~~~ 637 (865)
T PRK00252 565 EVLGEHVTQAGSLVA-PDRLRFDFSH-FEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGA-----MALFGEK 637 (865)
T ss_pred HHhhhheEeccCccc-CCeEEEEeec-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhCCc-----hhhcccc
Confidence 99987765 344443 3899999986 46799999999999999999 9999999999999997431 1223222
Q ss_pred CCCCcEEEEEeCC-eecccCCCCCCCCCCcccEEEEeecc
Q 008152 245 PADKTITVYRCGP-LVDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 245 ~~~~~v~vy~~g~-~~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
..+.|+|+.+|+ .++.|+||||+|||+|+.|+|++.++
T Consensus 638 -y~~~VRVV~Ig~~d~~~CgGTHV~nTgeIg~~kI~~~~~ 676 (865)
T PRK00252 638 -YGDEVRVVSIGDFSIELCGGTHVSNTGDIGLFKIVSESG 676 (865)
T ss_pred -CCCeEEEEEECCceeeCCCCCccCCcccCeEEEEEEEee
Confidence 246799999999 56999999999999999999998764
No 37
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.60 E-value=3e-14 Score=154.84 Aligned_cols=300 Identities=15% Similarity=0.174 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccC-cchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEE
Q 008152 200 DHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDN-NFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFG 277 (576)
Q Consensus 200 edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~-~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~ 277 (576)
...+.|++.+.++. ..-+++..+|.-|-.+.|... +. . +...=.+|++ .|- .|-
T Consensus 19 ~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~-~-------~~~~~~~~~~---~D~-~g~------------ 74 (423)
T PRK12420 19 VLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGG-G-------DEILKEIYTL---TDQ-GKR------------ 74 (423)
T ss_pred HHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCC-C-------cccccceEEE---ecC-CCc------------
Confidence 44667777777777 888888888776666666431 10 0 0000135552 231 111
Q ss_pred EEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchh
Q 008152 278 CLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ 357 (576)
Q Consensus 278 l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~ 357 (576)
-..|++.-+.+..|+.. .......|+|++++|.+||++..+ .| |.|||+|.|+|+|+.+++
T Consensus 75 ------~l~LRpD~T~~iaR~va---------~~~~~~~p~r~~y~g~vfR~~~~~--~g--r~rE~~Q~g~EiiG~~~~ 135 (423)
T PRK12420 75 ------DLALRYDLTIPFAKVVA---------MNPNIRLPFKRYEIGKVFRDGPIK--QG--RFREFIQCDVDIVGVESV 135 (423)
T ss_pred ------eecccccccHHHHHHHH---------hCcCCCCCeeEEEEcceECCCCCC--CC--ccceeEECCeeeECCCCC
Confidence 11234333334445421 011124699999999999998754 24 899999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC-----ccCCChH-----------H-----HH-----------------
Q 008152 358 IKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE-----KYLGDLA-----------T-----WE----------------- 399 (576)
Q Consensus 358 ~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~-----~~~G~~~-----------~-----~~----------------- 399 (576)
..| +|++.++.++++.||+++.+.++++.- ..+|.++ . |+
T Consensus 136 ~ad--aEvi~la~~~l~~lg~~~~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~ 213 (423)
T PRK12420 136 MAE--AELMSMAFELFRRLNLEVTIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMAD 213 (423)
T ss_pred ccc--HHHHHHHHHHHHHCCCCEEEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHH
Confidence 666 789999999999999999999987320 0011000 0 00
Q ss_pred ---------------HH------------H---HHHHHHHHHcCCC--cEEcCCC---Cccc-ccceeEEEeccccCcee
Q 008152 400 ---------------KA------------E---AALTEALNEFGKP--WQINEGD---GAFY-GPKIDISVSDALKRKFQ 443 (576)
Q Consensus 400 ---------------~a------------~---~~L~~~l~~~~~~--~~~~~g~---~afy-gpkid~~~~d~~gr~~~ 443 (576)
.+ . ..+.+.|+.+|.. +.++++. -.|| |.-++++..+. +..
T Consensus 214 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~-~~~-- 290 (423)
T PRK12420 214 TICNTVLSCLQLSIADFKEAFNNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDG-SIT-- 290 (423)
T ss_pred HHHHHHhccChhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCC-Ccc--
Confidence 00 0 0111222222322 2344432 1244 44333332210 000
Q ss_pred cceeeecccCCceeeeEEeecCCC-cccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHH
Q 008152 444 CATLQLDFQLPDRFNLGYSAEDEA-KTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQ 522 (576)
Q Consensus 444 ~~tiqld~~~~~rf~l~y~~~~~g-~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~ 522 (576)
.. .-.++|||-... .-.| +...|.+ +.++ |+||++.++... +. +. .|.||.|+|+++. ..|.+
T Consensus 291 -~~----i~~GGRYD~L~~-~f~~~~~~~pAv-Gfa~--~~~~l~~~l~~~--~~-~~--~~~dvlI~~~~~~--~~a~~ 354 (423)
T PRK12420 291 -SS----IGSGGRYDNIIG-AFRGDDMNYPTV-GISF--GLDVIYTALSQK--ET-IS--STADVFIIPLGTE--LQCLQ 354 (423)
T ss_pred -cc----ccCCccHHHHHH-HhCCCCCCCCce-eEEE--cHHHHHHHHHhc--CC-CC--CCceEEEEEcCCH--HHHHH
Confidence 01 123456652110 0001 1245664 5553 799999777653 22 22 6899999998754 46999
Q ss_pred HHHHHHh-CCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 523 VRDHIYR-AGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 523 i~~~Lr~-~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
++++||+ +|++|++|.++.+++++++.|++.|+||++|+|+
T Consensus 355 ia~~Lr~~~Gi~ve~~~~~~~l~~~i~~A~~~g~~~iviig~ 396 (423)
T PRK12420 355 IAQQLRSTTGLKVELELAGRKLKKALNYANKENIPYVLIIGE 396 (423)
T ss_pred HHHHHHhhcCCeEEEecCCcCHHHHHHHHHHcCCCEEEEECh
Confidence 9999999 9999999999999999999999999999999996
No 38
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.58 E-value=1.9e-14 Score=167.35 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=129.9
Q ss_pred EeecCCCCHHHHHhhhccccccceEE-EEECCEEeecc-cc-ccCCCcEEE-eecCChhhhHHHHHHHHHHHHHHHHHHh
Q 008152 95 EGKRWETSPMDIAQGISKSLAANALI-SMVNGVLWDMT-RP-LEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQY 170 (576)
Q Consensus 95 ~~~~~~ttp~dia~~i~~~~~~~~v~-a~Vng~l~dL~-~~-l~~d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A~~~~f 170 (576)
.|+.+|..|.|...-...+..-.++- -+.+|.++..- .+ +.....|+. ||++... .-+-+||++|||.+|+++++
T Consensus 533 FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~l~~G~~V~~~VD~~rR~-~~m~~HTAtHLL~~alr~vl 611 (902)
T TIGR03683 533 FYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVDGEGIKEGDEVKGEIDWERRL-RLMRHHTATHVLLAAARRVL 611 (902)
T ss_pred CCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCCCCCCCCCEEEEEECHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 35556777777654432221112222 22577766432 22 444445553 6665542 33559999999999999999
Q ss_pred CCeEEe-cCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhccc-CCC
Q 008152 171 GCKLCI-GPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIIND-LPA 246 (576)
Q Consensus 171 g~~l~i-g~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~-~~~ 246 (576)
|.++.. |..++ .+.+++||.. ..++|++++.+||+.+|++| ++|++..+++++||.+++.- .+... .+.
T Consensus 612 G~~v~q~Gs~v~-~d~~r~Df~~-~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~-----~l~~~~~~~ 684 (902)
T TIGR03683 612 GRHVWQAGAQKD-TDKARLDITH-YKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGF-----RLYQGGVPP 684 (902)
T ss_pred CCceeecCcccc-CCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCch-----hhhccCCCC
Confidence 988755 44443 3789999975 46799999999999999999 99999999999999986542 22221 223
Q ss_pred CCcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecc
Q 008152 247 DKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 247 ~~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
++.|+|+++|++ +..|+||||.|||+|+.|+|++.++
T Consensus 685 ~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~~~ 722 (902)
T TIGR03683 685 GREIRVVEIEDWDVQACGGTHCRNTGEIGPIKILKTER 722 (902)
T ss_pred CCeEEEEEECCeeeeCCCCCCccchhcCceEEEEEEEE
Confidence 578999999997 6899999999999999999998754
No 39
>PLN02900 alanyl-tRNA synthetase
Probab=99.57 E-value=3.3e-14 Score=165.57 Aligned_cols=183 Identities=15% Similarity=0.215 Sum_probs=130.3
Q ss_pred EEEeecCCCCHHHHHhhhcccc-ccceE-EEEECCEEeec----cccccCCCcEEE-eecCChhhhHHHHHHHHHHHHHH
Q 008152 93 VKEGKRWETSPMDIAQGISKSL-AANAL-ISMVNGVLWDM----TRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQA 165 (576)
Q Consensus 93 ~~~~~~~~ttp~dia~~i~~~~-~~~~v-~a~Vng~l~dL----~~~l~~d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A 165 (576)
+..|+.+|..|.|.-.-..... .-.++ +-+.+|.++.. ..++..+..|+. ||++.+. ..+-+||++|||.+|
T Consensus 529 T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv~k~~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~-~~m~~HTAtHLL~aA 607 (936)
T PLN02900 529 TSFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTEGSVSVGDAVTCKVDYDRRR-RIAPNHTATHLLNSA 607 (936)
T ss_pred CCCCCCCCCCCCCEEEEecCCCCEEEEEEEEEECCEEEEEEEeccCCCCCCCEEEEEECHHHHH-HHHHHHHHHHHHHHH
Confidence 3446666777777654432111 11222 12247877754 235555556664 6666542 335699999999999
Q ss_pred HHHHhCCeEEe-cCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhcc
Q 008152 166 IEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIIN 242 (576)
Q Consensus 166 ~~~~fg~~l~i-g~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~ 242 (576)
++++||.++.. |..++ .+++++||.. ..++|++++.+||++||++| +.||+..+++++||.++... . .++.
T Consensus 608 Lr~vlG~~v~q~Gs~v~-~d~~r~Df~~-~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~---~-~~f~ 681 (936)
T PLN02900 608 LKEVLGDHVDQKGSLVA-FEKLRFDFSH-GKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGL---R-AVFG 681 (936)
T ss_pred HHHHcCCcEEecccccc-CCeEEEEeeC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccCh---H-hhcC
Confidence 99999887754 44343 3799999986 56799999999999999999 99999999999999984321 1 1111
Q ss_pred cCCCCCcEEEEEeCCe--ecccCCCCCCCCCCcccEEEEeecc
Q 008152 243 DLPADKTITVYRCGPL--VDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 243 ~~~~~~~v~vy~~g~~--~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
+. -.+.|+|+.+|++ +++|+||||+|||+|+.|+|++.++
T Consensus 682 e~-y~~~VRVV~Ig~~~d~elCGGTHV~nTgeIG~fkIls~~~ 723 (936)
T PLN02900 682 EK-YPDPVRVVSVGGVYSMELCGGTHVSNTAEAEAFKLLSEEG 723 (936)
T ss_pred CC-CCCcEEEEEECCccceeCCCCCcCCccccCceEEEEEEee
Confidence 11 1257999999996 5889999999999999999998754
No 40
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.56 E-value=2.8e-14 Score=166.04 Aligned_cols=179 Identities=19% Similarity=0.231 Sum_probs=126.2
Q ss_pred eecCCCCHHHHHhhhccccccceEEE-EECCEEeecc-ccc-cCCCcEEE-eecCChhhhH-HHHHHHHHHHHHHHHHHh
Q 008152 96 GKRWETSPMDIAQGISKSLAANALIS-MVNGVLWDMT-RPL-EADCDLKL-FTFDSDEGRD-TFWHSSAHILGQAIEQQY 170 (576)
Q Consensus 96 ~~~~~ttp~dia~~i~~~~~~~~v~a-~Vng~l~dL~-~~l-~~d~~ve~-l~~~~~eG~~-vy~hS~ahlL~~A~~~~f 170 (576)
|+.+|..|.|...-...+..-.++-+ +++|.++..- .+. ..+..|+. ||++.. .+ +-+||++|||.+|++++|
T Consensus 530 YpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~~G~~V~~~VD~~rR--~~~mr~HTAtHLL~~al~~vl 607 (900)
T PRK13902 530 YPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLEGEPPKKGDEVRGEIDWERR--YRLMRHHTATHIILAAARKVL 607 (900)
T ss_pred CCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCCCCCCCCCEEEEEECHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 45556666665433211111122222 2477766432 222 21334553 555544 33 347999999999999999
Q ss_pred CCeEEe-cCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhccc-CCC
Q 008152 171 GCKLCI-GPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIIND-LPA 246 (576)
Q Consensus 171 g~~l~i-g~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~-~~~ 246 (576)
|.++.. |..++ .+.+++||.. ...+|++++.+||+.+|++| +.|++..+++++||.+++.- .+... .+.
T Consensus 608 G~~v~q~Gs~v~-~d~~r~Df~~-~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~-----~l~~~g~~~ 680 (900)
T PRK13902 608 GDHVWQAGAQKT-VDKARLDITH-YKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGF-----RLYQGGVPP 680 (900)
T ss_pred CCceeecCcccc-CCCEEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccch-----hhhccCCCC
Confidence 988754 44443 3789999986 46799999999999999999 99999999999999986532 23221 224
Q ss_pred CCcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecc
Q 008152 247 DKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 247 ~~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
++.|+|+++|++ ++.|+||||.|||+|+.|+|++.++
T Consensus 681 ~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~e~ 718 (900)
T PRK13902 681 GKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKILKTER 718 (900)
T ss_pred CCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEEEEEEE
Confidence 578999999997 6899999999999999999998753
No 41
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.56 E-value=8.1e-15 Score=158.43 Aligned_cols=162 Identities=23% Similarity=0.415 Sum_probs=109.8
Q ss_pred hhhcCCeeeeeeccceeccccC---CCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEE-EccC
Q 008152 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK-LSTR 387 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g---~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~-lstr 387 (576)
+|++||+++++++.+||.|..+ ...||+|++||+|.|+|+||+++++.+++.++++++.++|+.||++|.+. +.++
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~ 326 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRVVNLCSG 326 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCcc
Confidence 7889999999999999999853 36799999999999999999999999999999999999999999997654 5442
Q ss_pred CCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCC
Q 008152 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (576)
Q Consensus 388 ~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g 467 (576)
-+|....... .++. | -|+.+.| + ++ ..|+.+ .||+ +.|+++.|.+.+++
T Consensus 327 ---dlg~~a~~~y---diE~--------w--~p~~~~~-~---ev---------~s~sn~-~d~q-srr~~i~y~~~~~~ 375 (418)
T TIGR00414 327 ---DLGFSAAKKY---DLEV--------W--MPGQNTY-R---EI---------SSCSNC-TDFQ-ARRLNIRYKDKNKG 375 (418)
T ss_pred ---ccccCHhhhh---hHHH--------h--CCCcCce-E---EE---------EEEcCc-chHh-HHhCCcEEECCCCC
Confidence 2332211000 0000 1 1221111 0 11 111211 3554 57999999865423
Q ss_pred cccccEEEEecccccHHHHHHHHHHhcC---C--CCCCCCCCc
Q 008152 468 KTERPVMIHRAILGSVERMFAILLEHYK---G--KWPFWLSPR 505 (576)
Q Consensus 468 ~~~~P~ii~~a~~GgiERlia~L~E~~~---g--~~P~~laP~ 505 (576)
....++++..+. .|++|+|++|+|++. | +||..|.|+
T Consensus 376 ~~~~vh~ln~~~-~ai~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 376 KNKYVHTLNGTA-LAIGRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred ceEEEEeecCcc-hHHHHHHHHHHHHccCCCCCEeCChhcccc
Confidence 223333322222 379999999999874 4 599988885
No 42
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.55 E-value=9.7e-15 Score=148.23 Aligned_cols=232 Identities=16% Similarity=0.228 Sum_probs=142.6
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+| |+. +....-.++|++.+++.. ..-++...+|.-+-.++|+..+. ++.. .=.+|.+.+-
T Consensus 21 ~G~~-~~l----P~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~----~~~~----~~emy~~~d~---- 83 (255)
T cd00779 21 SGLY-SWL----PLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGR----WDAY----GPELLRLKDR---- 83 (255)
T ss_pred CceE-EEC----chHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCC----cccc----CcccEEEecC----
Confidence 7875 553 234456778888888877 77788888877666666644221 0000 1134554221
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
| ...++|++.....+..++ ...-.+|+++|+++++++.+||+|.++. .||+|+|
T Consensus 84 -~-----------------~~~l~LrPt~e~~~t~~~-------~~~i~s~~~LPlr~~~~~~~FR~E~~~~-~Gl~R~r 137 (255)
T cd00779 84 -H-----------------GKEFLLGPTHEEVITDLV-------ANEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGR 137 (255)
T ss_pred -C-----------------CCeEEEecCCcHHHHHHH-------HhccccHhhCCHHHHhCcceecCCCCCC-Cceeeee
Confidence 0 112344432221121111 1111367899999999999999997664 8999999
Q ss_pred cccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCC
Q 008152 343 RFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421 (576)
Q Consensus 343 eF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g 421 (576)
||+|.|+|+||.+ +++++|+.+++.++.++|+.||+++.+..+.+ +.+|....
T Consensus 138 eF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~~~~~~--~~~gg~~s------------------------ 191 (255)
T cd00779 138 EFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLPFVKVEADS--GAIGGSLS------------------------ 191 (255)
T ss_pred eEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecC--CCCCCccc------------------------
Confidence 9999999999997 57889899999999999999999977666432 34443211
Q ss_pred CCcccccceeEEEeccccCceecceee-ecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHh
Q 008152 422 DGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEH 493 (576)
Q Consensus 422 ~~afygpkid~~~~d~~gr~~~~~tiq-ld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~ 493 (576)
-++|+...-..++..|.+++. +.-..+.+||++|.+++ |+.+.+++ .++.+ |++|+|++++|+
T Consensus 192 ------~~~~~e~~~~~~~~~e~~s~~~lg~~~sr~~~i~~~~~~-~~~~~~~~-~~~gi-~~~R~l~ai~e~ 255 (255)
T cd00779 192 ------HEFHVLSPLKITKGIEVGHIFQLGTKYSKALGATFLDEN-GKPKPLEM-GCYGI-GVSRLLAAIIEQ 255 (255)
T ss_pred ------EEEEEEEecCCCCeEEEEeeeecchhHHHhcCcEEECCC-CCEEeeEe-cCccc-hHHHHHHHHHcC
Confidence 111222111112222322221 11134789999998665 55544544 44433 799999999984
No 43
>PLN02972 Histidyl-tRNA synthetase
Probab=99.53 E-value=4.1e-13 Score=151.88 Aligned_cols=225 Identities=15% Similarity=0.192 Sum_probs=141.8
Q ss_pred CCeeeeeeccceeccccCCCccceecccccccCeeEEcCchh-HHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC----
Q 008152 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE---- 389 (576)
Q Consensus 316 lpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~-~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~---- 389 (576)
.|+|.|++|.+||+++.. .| |.|||+|.|+++|+..++ ..| +|++.++.++++.||++ |.+.+|++.-
T Consensus 416 ~p~KrYyiG~VFR~e~pq--kG--R~REF~Q~G~EIIG~~~~~~aD--AEVI~La~E~L~~LGi~df~I~INh~~iL~~I 489 (763)
T PLN02972 416 TSFKRYQIAKVYRRDNPS--KG--RYREFYQCDFDIAGVYEPMGPD--FEIIKVLTELLDELDIGTYEVKLNHRKLLDGM 489 (763)
T ss_pred CcceEEEeccEEecCCCC--CC--CCccceEEeEEEEcCCCcchhh--HHHHHHHHHHHHhCCCCceEEEeCCHHHHHHH
Confidence 478999999999999753 34 899999999999998544 334 67999999999999996 9999998631
Q ss_pred -ccCCCh-HH---------------HHHHHHHH--------------H--------------------------------
Q 008152 390 -KYLGDL-AT---------------WEKAEAAL--------------T-------------------------------- 406 (576)
Q Consensus 390 -~~~G~~-~~---------------~~~a~~~L--------------~-------------------------------- 406 (576)
..+|.+ +. |+...+.| .
T Consensus 490 Le~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~~~~~~l~~~~~~~~a 569 (763)
T PLN02972 490 LEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLRQEGSEFLGNASSRAA 569 (763)
T ss_pred HHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhHhhccChHHHHH
Confidence 111211 11 11000000 0
Q ss_pred --------HHHHHcCC--CcEEcCCC--C-ccc-ccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCccccc
Q 008152 407 --------EALNEFGK--PWQINEGD--G-AFY-GPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERP 472 (576)
Q Consensus 407 --------~~l~~~~~--~~~~~~g~--~-afy-gpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P 472 (576)
+.|+.+|. .+.++++- | .|| |.-++++..+ .+ .+.+ -.++|||-... . -|++..|
T Consensus 570 L~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g-~~----~gsI----agGGRYD~Lv~-~-FgG~~vP 638 (763)
T PLN02972 570 LDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKG-AQ----VGSI----AAGGRYDNLVG-M-FSGKQVP 638 (763)
T ss_pred HHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcC-Cc----ccee----eecCCchhHHH-h-cCCCCCC
Confidence 00011111 12222221 1 122 3322222111 00 0011 13445542110 0 0234567
Q ss_pred EEEEecccccHHHHHHHHHHhcCCCCCC---CCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHH
Q 008152 473 VMIHRAILGSVERMFAILLEHYKGKWPF---WLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTT 549 (576)
Q Consensus 473 ~ii~~a~~GgiERlia~L~E~~~g~~P~---~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~ 549 (576)
.+ +.++ |+||++.++.+. +..+. .-++.+|+|++.+++...++.++++.||++||+|+++. ..+++++++.
T Consensus 639 AV-GFSi--GIERL~~~L~~~--~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~~~-~~kl~kq~~~ 712 (763)
T PLN02972 639 AV-GVSL--GIERVFAIMEQQ--EEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAEYKV-STRKAKHLKR 712 (763)
T ss_pred EE-EEEe--cHHHHHHHHHHc--ccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeC-CCCHHHHHHH
Confidence 65 5553 799999877653 22221 12457999999998888899999999999999999976 5789999999
Q ss_pred hHhcCCceEEEecc
Q 008152 550 SNFEIKNPHYFYCP 563 (576)
Q Consensus 550 A~~~g~p~~iIiGp 563 (576)
|++.|++|++|+|.
T Consensus 713 A~k~gi~~vVIIGe 726 (763)
T PLN02972 713 AKESGIPWMVLVGE 726 (763)
T ss_pred HHHCCCCEEEEECc
Confidence 99999999999996
No 44
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.52 E-value=3.4e-14 Score=153.95 Aligned_cols=163 Identities=26% Similarity=0.386 Sum_probs=114.8
Q ss_pred hhhcCCeeeeeeccceeccccC---CCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEE-EEccC
Q 008152 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTR 387 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g---~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l-~lstr 387 (576)
+|++||+++++++.+||.|..+ ...||+|++||+|.|+|+||+++++.+|+.++++++.++|+.||++|++ .++++
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~ 324 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRVVLLCTG 324 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 6889999999999999999864 4789999999999999999999999999999999999999999999776 45443
Q ss_pred CCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCC
Q 008152 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (576)
Q Consensus 388 ~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g 467 (576)
.+|..+..... ++. | -|+.+.| .++. ....| .|| .+.|+++.|.+..+|
T Consensus 325 ---dlg~~a~~~~D---iE~--------w--~p~~~~~----~ev~------s~snc----~d~-qsrr~~i~~~~~~~~ 373 (425)
T PRK05431 325 ---DLGFSAAKTYD---LEV--------W--LPSQNTY----REIS------SCSNC----TDF-QARRANIRYRDEGDG 373 (425)
T ss_pred ---ccCCchHheec---HHH--------h--CcccCCe----eEEE------EecCc----cch-hhhhcCcEEecCCCC
Confidence 23333211100 000 1 1222221 0111 11112 244 367899999866225
Q ss_pred cccccEEEEecccccHHHHHHHHHHhcC---C--CCCCCCCCce
Q 008152 468 KTERPVMIHRAILGSVERMFAILLEHYK---G--KWPFWLSPRQ 506 (576)
Q Consensus 468 ~~~~P~ii~~a~~GgiERlia~L~E~~~---g--~~P~~laP~q 506 (576)
....++.+.++.+ +++|+|++|+|++. | +||..|+|+-
T Consensus 374 ~~~~~htln~t~~-a~~R~l~ailE~~q~~~g~i~iP~~l~py~ 416 (425)
T PRK05431 374 KPELVHTLNGSGL-AVGRTLVAILENYQQADGSVTIPEVLRPYM 416 (425)
T ss_pred ceeEEEEeCCchh-hHHHHHHHHHHHCCCCCCcEECChhhhccc
Confidence 4555555544544 69999999999874 4 6999999974
No 45
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=9.6e-14 Score=157.83 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHh
Q 008152 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (576)
Q Consensus 153 vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~l 230 (576)
+-.||++|||.+|++++.|.|+....|+...+-..+||.. .+.+|.|++++||+.+|++| +.|++..+|++++|+++
T Consensus 564 ~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH-~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~ 642 (879)
T COG0013 564 MRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSH-YKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK 642 (879)
T ss_pred HhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecC-CCCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh
Confidence 3489999999999999999999998888656889999987 67899999999999999999 99999999999999985
Q ss_pred hccCcchhhhcccCCCCCcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecc
Q 008152 231 FSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 231 F~~~~~K~~Ll~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
|.. .|..+.. .+.|+|+++|+| +++|+|+||.|||.|+.|+|++.++
T Consensus 643 ----Ga~-alfGekY-~~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e~~ 690 (879)
T COG0013 643 ----GAM-ALFGEKY-GDEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISEEG 690 (879)
T ss_pred ----ChH-hhcCCcC-CCeEEEEEECCceeeccCCcccCCccceeeEEEEEecc
Confidence 211 2333332 378999999997 7999999999999999999999864
No 46
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3e-14 Score=149.14 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=83.4
Q ss_pred ccEEEEecccccHHHHHHHHHHhc-C--C-------CCCCCCCCceEEEEeCC--CChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 471 RPVMIHRAILGSVERMFAILLEHY-K--G-------KWPFWLSPRQAIVCPVS--EKSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 471 ~P~ii~~a~~GgiERlia~L~E~~-~--g-------~~P~~laP~qV~Vipv~--~~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
.|-+|..+ + |+-|++..|.||. . | .+|+-+||+++.|.|++ ++..+.+.+|.+.|++.|+.+-+|+
T Consensus 456 ~P~VIEPS-f-GiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdd 533 (599)
T KOG2298|consen 456 NPDVIEPS-F-GIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDD 533 (599)
T ss_pred cCCccccc-c-hhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchhHHHHHHHHHHHHHhCCCeEEecC
Confidence 56676666 4 6999999999984 1 2 69999999999999998 5788999999999999999999999
Q ss_pred CCCcHHHHHHHhHhcCCceEEEecceEE
Q 008152 539 TDRKIQKKVTTSNFEIKNPHYFYCPMLL 566 (576)
Q Consensus 539 ~~~slgkkir~A~~~g~p~~iIiGp~~~ 566 (576)
++.|+|+|+.+-|.+|+||-|.+-+-.+
T Consensus 534 s~~SIGrrYAr~DElgipFgiTvDfdtl 561 (599)
T KOG2298|consen 534 SSSSIGRRYARTDELGIPFGVTVDFDTL 561 (599)
T ss_pred CCCcHhhhhhccccccCceEEEEchhhh
Confidence 9999999999999999999998877655
No 47
>PLN02961 alanine-tRNA ligase
Probab=99.49 E-value=6.4e-13 Score=132.26 Aligned_cols=186 Identities=16% Similarity=0.195 Sum_probs=125.3
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhcccc--ccceEE-EEECCEEeecc----------ccccCCCcEEE-eecCChh
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSL--AANALI-SMVNGVLWDMT----------RPLEADCDLKL-FTFDSDE 149 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~--~~~~v~-a~Vng~l~dL~----------~~l~~d~~ve~-l~~~~~e 149 (576)
+.|.| | ++..|+.+|..|.|.-.-...+. .-.++- -+.+|.+|..- .+|.....|+. ||++-.
T Consensus 3 ~~viL-d-~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR- 79 (223)
T PLN02961 3 IALVL-D-RTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRR- 79 (223)
T ss_pred eEEEe-C-CceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHH-
Confidence 44555 2 35567777888888765432111 112222 23588877642 24544445554 666554
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hCCeE-EecCccccCCceEEEEEcCCCCCCHhH----HHHHHHHHHHHh--cCCEEEEE
Q 008152 150 GRDTFWHSSAHILGQAIEQQ-YGCKL-CIGPCTTRGEGFYYDAFYGDLGLNPDH----FKSIDSEADKAA--KQPFERIE 221 (576)
Q Consensus 150 G~~vy~hS~ahlL~~A~~~~-fg~~l-~ig~si~~~~Gfy~d~~~~~~~~t~ed----l~~Ie~~m~~iI--~~pi~r~~ 221 (576)
-.-+-.||++|||.+|++++ +|... ..|.... ++-|.|+. ..++.++ +.+||+++|++| ++|++..+
T Consensus 80 ~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~--~~~~v~~~---~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~ 154 (223)
T PLN02961 80 KLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHFP--DGPFVEYK---GKIPQGELDSKQDELEAEANELIAEGGKVSAAV 154 (223)
T ss_pred hhhhccCcHHHHHHHHHHHcCCCccccccccccC--Cccceeec---ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEE
Confidence 12344899999999999997 55433 3454455 67777764 2466544 479999999999 99999999
Q ss_pred eCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeecc-cCCCCCCCCCCcccEEEEeec
Q 008152 222 VTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDL-CRGPHIPNTSFVKGFGCLKAS 282 (576)
Q Consensus 222 vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~-c~Gphvp~Tg~Ik~f~l~~~~ 282 (576)
+++++|.++... +.. ...+..+.+++.++|++... |+|+||.|||+|+.|+|++.+
T Consensus 155 ~~~~ea~~~~~~---~~~--~~~~~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~~ 211 (223)
T PLN02961 155 LPYDEAAELCGG---SLP--DYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIR 211 (223)
T ss_pred eCHHHHHHhcCC---cCC--CcCCCCCceEEEEECCCccCccCCcccCchhccccEEEEEEE
Confidence 999999986432 111 11112467999999998756 999999999999999999764
No 48
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.41 E-value=5.7e-13 Score=130.63 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=64.0
Q ss_pred CCCCCCCCceEEEEeCCCC------hHHHHHHHHHHHHhCCcEEEEeCCCC-cHHHHHHHhHhcCCceEEEecce
Q 008152 497 KWPFWLSPRQAIVCPVSEK------SQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 497 ~~P~~laP~qV~Vipv~~~------~~~~a~~i~~~Lr~~Gi~v~vD~~~~-slgkkir~A~~~g~p~~iIiGp~ 564 (576)
+||+|+||.||+|+|+++. ..++|.+|++.|+++|++|++|+++. ++|+||++|++.|+||+++|||-
T Consensus 3 vlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~ 77 (202)
T cd00862 3 VLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPR 77 (202)
T ss_pred cCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcc
Confidence 7999999999999999865 78899999999999999999999887 99999999999999999998885
No 49
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.37 E-value=1.4e-12 Score=142.74 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=109.4
Q ss_pred hhhcCCeeeee-eccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC
Q 008152 312 AFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE 389 (576)
Q Consensus 312 s~relpl~l~~-vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~ 389 (576)
++++||+++++ .|.+||+| +|.+.||+|+++|+|.|+|+||+++|+.+|+.+++++...+++.||++ +++..++ |
T Consensus 330 s~rdLPLrl~e~sG~cFR~E-sGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~D-P- 406 (517)
T PRK00960 330 DVDELPIKFFDRSGWTYRWE-GGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWREVGDD-P- 406 (517)
T ss_pred ChhhCCHHHhhccCCceeCC-CCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEEeccc-c-
Confidence 68899999999 67999999 688899999999999999999999999999999999999999999999 6655443 2
Q ss_pred ccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCccc-ccceeEEEecc----ccC--ceecceeeecccCCceeeeEEe
Q 008152 390 KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFY-GPKIDISVSDA----LKR--KFQCATLQLDFQLPDRFNLGYS 462 (576)
Q Consensus 390 ~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afy-gpkid~~~~d~----~gr--~~~~~tiqld~~~~~rf~l~y~ 462 (576)
|.+... + ...|+..|- ..+.|+.+.-. .|+ ..+..+.+-|+ .+.+||+.|.
T Consensus 407 -Ff~~~~----------------k----~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~-farrfnIk~~ 464 (517)
T PRK00960 407 -FYLEGR----------------G----LEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTH-FVEGFNIKDY 464 (517)
T ss_pred -cccccC----------------c----cccccccCccccceeEEEEecCccCCCCEEEEEeeeeccch-hhHhhCcccC
Confidence 221100 0 001110110 12344443322 233 33444444554 4789999762
Q ss_pred ecCCCcccccEEEEecccc-cHHHHHHHHHHhcC---CCCCCCC
Q 008152 463 AEDEAKTERPVMIHRAILG-SVERMFAILLEHYK---GKWPFWL 502 (576)
Q Consensus 463 ~~~~g~~~~P~ii~~a~~G-giERlia~L~E~~~---g~~P~~l 502 (576)
+ |. + .|.++.| |++|++++|+|+++ |.||..+
T Consensus 465 --~-g~---~--~hTnctG~g~eR~l~AlLe~hG~d~~~wPe~~ 500 (517)
T PRK00960 465 --K-GR---K--LWTGCTGYGLERWVIGFLAQKGFDPENWPEEI 500 (517)
T ss_pred --C-CC---e--EeecceeeHHHHHHHHHHHhcCCCCCcCCHHH
Confidence 2 22 2 3556666 89999999999986 5788643
No 50
>PLN02320 seryl-tRNA synthetase
Probab=99.36 E-value=3e-12 Score=139.36 Aligned_cols=158 Identities=27% Similarity=0.424 Sum_probs=111.6
Q ss_pred hhhcCCeeeeeeccceecccc--C-CCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeE-EEEEccC
Q 008152 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTY-ELKLSTR 387 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~--g-~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~-~l~lstr 387 (576)
+|++||+++..+|.+||.|.. | .+.||+|+++|++.|+|+||+++|..+|+.++++++.++|+.||++| .+.++++
T Consensus 308 s~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tg 387 (502)
T PLN02320 308 LESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMATA 387 (502)
T ss_pred CHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 588999999999999999997 7 88999999999999999999999999999999999999999999995 4666654
Q ss_pred CCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEec-cccCc---eecceeeecccCCceeeeEEee
Q 008152 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSD-ALKRK---FQCATLQLDFQLPDRFNLGYSA 463 (576)
Q Consensus 388 ~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d-~~gr~---~~~~tiqld~~~~~rf~l~y~~ 463 (576)
-+|..+. -++|+++.- +.++. -.|+. ..||| +.|.++.|..
T Consensus 388 ---DLg~~a~------------------------------kkyDiEvW~P~~~~y~EvsS~SN-c~DfQ-aRRl~iryr~ 432 (502)
T PLN02320 388 ---DLGAPAY------------------------------RKFDIEAWMPGLGRYGEISSASN-CTDYQ-SRRLGIRYRP 432 (502)
T ss_pred ---ccchhhh------------------------------heEEEEEEecCCCcEEEEeeecc-hhhHh-hhcccceecc
Confidence 2332211 112222211 11111 11222 25665 6789999975
Q ss_pred cC-------CC-----cccccEEEEecccccHHHHHHHHHHhcC---C--CCCCCCCCc
Q 008152 464 ED-------EA-----KTERPVMIHRAILGSVERMFAILLEHYK---G--KWPFWLSPR 505 (576)
Q Consensus 464 ~~-------~g-----~~~~P~ii~~a~~GgiERlia~L~E~~~---g--~~P~~laP~ 505 (576)
.+ .| ....++.+..+.+ -+.|+|++|+|+|. | .+|..|-|+
T Consensus 433 ~~~~~~~~~~~k~~~~~~~~vHTLNgTal-Av~R~l~AILENyQ~~dGsi~IP~vLrpy 490 (502)
T PLN02320 433 SEPPQTNPKKGKGSLGPTKFVHTLNATAC-AVPRMIVCLLENYQQEDGSVVIPEPLRPF 490 (502)
T ss_pred ccccccccccccccCCCcceeEecccchh-HHHHHHHHHHHhCcCCCCcEECChhhhhh
Confidence 31 12 1344554444433 59999999999973 4 577666654
No 51
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.35 E-value=8.6e-12 Score=124.09 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=137.4
Q ss_pred EEEeecCCCCHHHHHhhhccccccceEEEEECCE-Ee---eccccccCCCcEEE-eecCChhhhHHHHHHHHHHHHHHHH
Q 008152 93 VKEGKRWETSPMDIAQGISKSLAANALISMVNGV-LW---DMTRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIE 167 (576)
Q Consensus 93 ~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~-l~---dL~~~l~~d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A~~ 167 (576)
+..++.+|..|.|-..-+..+....++.+.++|. +| ++...+....+|+. +||+-.. .-+-.||+.|||++++.
T Consensus 32 T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~~~~~vG~~V~~~IDW~rRy-~~mr~HTa~Hlls~~~~ 110 (241)
T COG2872 32 TIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEHAKLKVGDKVKLKIDWERRY-RHMRMHTALHLLSAVLY 110 (241)
T ss_pred ccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCcccCCCCCEEEEEECcHHHH-HHHhhhHHHHHHHHHhh
Confidence 4556667778988887776666666666666765 44 23222333446664 8887662 23448999999999999
Q ss_pred HHhCCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhcccCC
Q 008152 168 QQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLP 245 (576)
Q Consensus 168 ~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~ 245 (576)
+.|+. ++.|..+.. +--+.||+.+ .+++++.++++..|++| +.|+....+++|||.+++.....+... .+
T Consensus 111 ~~~~~-~~~g~~i~~-d~~~iD~~~e---~~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~---~~ 182 (241)
T COG2872 111 KVYGA-LTTGFEIGE-DYARIDFDGE---DTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKV---PP 182 (241)
T ss_pred ccccc-eeecceecc-cccccccccc---cchhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcccC---Cc
Confidence 99984 444555542 4445677642 28999999999999999 999999999999999987654443322 22
Q ss_pred CC-CcEEEEEeCCeecc-cCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEe
Q 008152 246 AD-KTITVYRCGPLVDL-CRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (576)
Q Consensus 246 ~~-~~v~vy~~g~~~D~-c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiy 299 (576)
.. ..+++++|||+..- |+|+||.+||+|+.+++.+.+. ......|+|
T Consensus 183 ~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~k~e~-------k~k~~~Rv~ 231 (241)
T COG2872 183 DVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTEK-------KGKGNRRVY 231 (241)
T ss_pred cccceEEEEEECCeeccCCCCcccCCccceEEEEEEEEEE-------ecCceEEEE
Confidence 33 37999999995433 9999999999999999998743 234566776
No 52
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.35 E-value=2.1e-12 Score=116.42 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=64.8
Q ss_pred CCCCCCCCceEEEEeCC--CChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecceE
Q 008152 497 KWPFWLSPRQAIVCPVS--EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPML 565 (576)
Q Consensus 497 ~~P~~laP~qV~Vipv~--~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~~ 565 (576)
+||+|++|.||+|+|++ ++...+|.++++.||++|++|++|++ .++++++++|++.|+||++|+|+--
T Consensus 19 ~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 19 RLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred EcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 79999999999999999 78889999999999999999999999 9999999999999999999999753
No 53
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.35 E-value=1.8e-12 Score=117.86 Aligned_cols=71 Identities=10% Similarity=-0.003 Sum_probs=64.3
Q ss_pred CCCCCCCCceEEEEeCC---CChHHHHHHHHHHHHhCCcEEEEeCCCC---cHHHHHHHhHhcCCceEEEecceEEE
Q 008152 497 KWPFWLSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDR---KIQKKVTTSNFEIKNPHYFYCPMLLV 567 (576)
Q Consensus 497 ~~P~~laP~qV~Vipv~---~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~---slgkkir~A~~~g~p~~iIiGp~~~~ 567 (576)
+||+.+||+||.|+|++ ++..++|.+|++.|+++|++|.+|+++. ++|+||++|+++|+||+|+|||--+.
T Consensus 20 ~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~IG~~~l~ 96 (128)
T cd02426 20 KLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTLE 96 (128)
T ss_pred ECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEEECCCccc
Confidence 79999999999999994 3577899999999999999999999875 89999999999999999999986543
No 54
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.32 E-value=5.1e-12 Score=132.26 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=74.0
Q ss_pred HHHHHHHHHHh-c---CCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceE
Q 008152 483 VERMFAILLEH-Y---KGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 483 iERlia~L~E~-~---~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~ 558 (576)
++|++.+++++ + -|+||+|+||.||+|+|++++...+|.++++.||++|++|++|+++.++|+|+++|++.|+||+
T Consensus 249 ~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK~GaPfv 328 (387)
T PRK14938 249 VGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIPFV 328 (387)
T ss_pred ecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 67776665554 3 3899999999999999999888899999999999999999999999999999999999999999
Q ss_pred EEecce
Q 008152 559 YFYCPM 564 (576)
Q Consensus 559 iIiGp~ 564 (576)
+|+|+-
T Consensus 329 IIIGed 334 (387)
T PRK14938 329 IIIGER 334 (387)
T ss_pred EEECch
Confidence 999964
No 55
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.29 E-value=6.2e-12 Score=99.12 Aligned_cols=60 Identities=40% Similarity=0.589 Sum_probs=56.9
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEee
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
|+|++|||+.+++++ |+|++|+|+.|+.++++.+++|+|||++|||++||++||.|++++
T Consensus 1 I~v~lpdG~~~~~~~-g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPE-GSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEET-TBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCC-CCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 689999999999999 899999999999999999999999999999999999999999986
No 56
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.27 E-value=1.9e-10 Score=123.89 Aligned_cols=288 Identities=17% Similarity=0.213 Sum_probs=171.1
Q ss_pred HhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEE
Q 008152 199 PDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFG 277 (576)
Q Consensus 199 ~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~ 277 (576)
....+.|++.+.++. ..-++....|.-|-.+.|....- .. ..-.+|+ |.|-- .|.
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g--~~-------~~~~~~~---f~d~~-------~g~----- 72 (391)
T PRK12292 17 ARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGG--AI-------LDLRTFK---LVDQL-------SGR----- 72 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCC--cc-------chhhhEE---EeecC-------CCC-----
Confidence 445667777777777 88888888887776666643110 00 0112454 23310 111
Q ss_pred EEeecceeecCCCCCCCceeEeccccCChhhhhhhh--hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCc
Q 008152 278 CLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAF--AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (576)
Q Consensus 278 l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~--relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~ 355 (576)
-.-|++.-+.++.|++ .... ...|+|++++|.+||++..+ .| |.|||+|.|+|+||.+
T Consensus 73 ------~l~LRpD~T~~iaR~~----------a~~~~~~~~p~r~~y~g~vfR~~~~~--~g--r~ref~Q~g~EiiG~~ 132 (391)
T PRK12292 73 ------TLGLRPDMTAQIARIA----------ATRLANRPGPLRLCYAGNVFRAQERG--LG--RSREFLQSGVELIGDA 132 (391)
T ss_pred ------EEEECCCCcHHHHHHH----------HHhccCCCCCeEEEeeceeeecCCCc--CC--CccchhccceEEeCCC
Confidence 1224444444555543 1111 25689999999999999754 24 8999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC-----ccCCCh-HHHHHHH--------------------------
Q 008152 356 SQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE-----KYLGDL-ATWEKAE-------------------------- 402 (576)
Q Consensus 356 ~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~-----~~~G~~-~~~~~a~-------------------------- 402 (576)
+...| +|++.++.++++.+|++ +.+.++++.- ..+|-+ +.++...
T Consensus 133 ~~~aD--aEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l 210 (391)
T PRK12292 133 GLEAD--AEVILLLLEALKALGLPNFTLDLGHVGLFRALLEAAGLSEELEEVLRRALANKDYVALEELVLDLSEELRDAL 210 (391)
T ss_pred CchHH--HHHHHHHHHHHHHcCCCCeEEEeccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHH
Confidence 87666 78999999999999997 9999987520 011111 0000000
Q ss_pred -----------------------------HHH---HHHHHHcCC--CcEEcCCC--C-ccc-ccceeEEEeccccCceec
Q 008152 403 -----------------------------AAL---TEALNEFGK--PWQINEGD--G-AFY-GPKIDISVSDALKRKFQC 444 (576)
Q Consensus 403 -----------------------------~~L---~~~l~~~~~--~~~~~~g~--~-afy-gpkid~~~~d~~gr~~~~ 444 (576)
+.| .+.|+..|. .+.++++. + .|| |.-++++..+ .|..
T Consensus 211 ~~l~~~~g~~~~l~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~-~~~~--- 286 (391)
T PRK12292 211 LALPRLRGGREVLEEARKLLPSLPIKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDG-VGNP--- 286 (391)
T ss_pred HHHHHhcCCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECC-CCCc---
Confidence 000 011111111 12233321 1 133 3333332211 1110
Q ss_pred ceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHH
Q 008152 445 ATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVR 524 (576)
Q Consensus 445 ~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~ 524 (576)
.-.++|||-... .- +...|.+ +.++ |+||++.+ . ..+ ...|.++.|++.+++....|.+++
T Consensus 287 ------i~~GGRYD~L~~-~f--g~~~pAv-Gfai--~ldrl~~~-~----~~~--~~~~~~~~v~~~~~~~~~~a~~~~ 347 (391)
T PRK12292 287 ------IASGGRYDDLLG-RF--GRARPAT-GFSL--DLDRLLEL-Q----LEL--PVEARKDLVIAPDSEALAAALAAA 347 (391)
T ss_pred ------ccCCcchhhHHH-Hc--CCCCCCc-eEEe--eHHHHHhh-c----ccc--ccccCCcEEEEeCcccHHHHHHHH
Confidence 123445542210 00 1345665 5553 79999863 1 111 224567899999888888899999
Q ss_pred HHHHhCCcEEEEeCCCCcHHHHHHHhHhcCC
Q 008152 525 DHIYRAGYYVDVDTTDRKIQKKVTTSNFEIK 555 (576)
Q Consensus 525 ~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~ 555 (576)
++||++|++|+++....++++.++.|+..|+
T Consensus 348 ~~Lr~~G~~~~~~~~~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 348 QELRKKGEIVVLALPGRNFEDAREYARDRQI 378 (391)
T ss_pred HHHHHcCCEEEEecCCCChHHHHHHHhhcCe
Confidence 9999999999999887889999999999997
No 57
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.22 E-value=8.1e-12 Score=119.33 Aligned_cols=76 Identities=37% Similarity=0.662 Sum_probs=70.2
Q ss_pred hhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCC-eEEEEEccCCC
Q 008152 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPE 389 (576)
Q Consensus 313 ~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~-~~~l~lstr~~ 389 (576)
|+++|++++++|.+||+|. +...|+.|+|||+|.|+|+||+++++.+++.++++.+.++|+.||+ ++++..+++++
T Consensus 79 ~~~LP~~~~~~g~~fR~E~-~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~ 155 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEA-RPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGE 155 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSS-SSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCT
T ss_pred cccCCeEEeeccccccccc-ccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCc
Confidence 8899999999999999998 5568999999999999999999999999999999999999999999 79999988753
No 58
>PLN02678 seryl-tRNA synthetase
Probab=99.22 E-value=4.3e-11 Score=129.64 Aligned_cols=162 Identities=22% Similarity=0.377 Sum_probs=109.8
Q ss_pred hhhcCCeeeeeeccceecccc--C-CCccceecccccccCeeEEcCchh--HHHHHHHHHHHHHHHHHHhCCeEEEEEcc
Q 008152 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELKLST 386 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~--g-~l~gLiRvreF~q~da~iF~~~~~--~~~e~~~~l~~~~~i~~~lG~~~~l~lst 386 (576)
+|++||++++.++.+||.|.+ | ...||+|+++|+|.|+..||.+++ ..+++.++++.+..+|..||++|++..-.
T Consensus 250 s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~ 329 (448)
T PLN02678 250 DPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIV 329 (448)
T ss_pred CHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 578999999999999999996 4 789999999999999999999988 88999999999999999999998865421
Q ss_pred CCCccCCChHHHHHHHHHHHHHHHHcCCCcE-EcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecC
Q 008152 387 RPEKYLGDLATWEKAEAALTEALNEFGKPWQ-INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAED 465 (576)
Q Consensus 387 r~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~-~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~ 465 (576)
. +.+|..... + .+.+ ..|+.+.| .++ ..|+.+ .||| +.|.++.|.+..
T Consensus 330 s--gdlg~~a~~------------~--yDiE~W~P~~~~y------~Ev-------sS~Snc-~D~Q-aRRl~iryr~~~ 378 (448)
T PLN02678 330 S--GALNDAAAK------------K--YDLEAWFPASKTY------REL-------VSCSNC-TDYQ-SRRLEIRYGQKK 378 (448)
T ss_pred c--cccCCchhh------------c--eeeEeeccccCCc------eEE-------eeeccc-ccHh-hhcccceecccc
Confidence 1 334432110 0 0011 12322221 111 112222 4664 678999997542
Q ss_pred --CCcccccEEEEecccccHHHHHHHHHHhcC---C-CCCCCCCCc
Q 008152 466 --EAKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPR 505 (576)
Q Consensus 466 --~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~laP~ 505 (576)
+|....++.+..+.+ -+.|+|++|+|+|. | ..|..|-|+
T Consensus 379 ~~~~~~~~vHTLNgt~l-A~~R~l~AiLEn~Q~~dgi~iP~vL~py 423 (448)
T PLN02678 379 SNEQTKQYVHLLNSTLT-ATERTLCCILENYQTEDGVRVPEVLQPF 423 (448)
T ss_pred cCCCCceeEEecCCchh-HHHHHHHHHHHhCcCCCCeECChhhhhh
Confidence 133445555544444 59999999999973 3 355555443
No 59
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.17 E-value=5.9e-11 Score=101.67 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=56.1
Q ss_pred eEEEEeCCC---ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 506 QAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 506 qV~Vipv~~---~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
||+|+|++. +..++|.++++.|+++|++|++|+++.++|+||++|++.|+||++|+|+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECc
Confidence 799999999 8899999999999999999999999999999999999999999999996
No 60
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.14 E-value=9.8e-11 Score=100.05 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=57.5
Q ss_pred CceEEEEeCCC---ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 504 PRQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 504 P~qV~Vipv~~---~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|+||+|+|++. +..++|.++++.||++|++|++|+++.++++++++|++.|+||++|+|+-
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCc
Confidence 89999999987 67789999999999999999999998999999999999999999999964
No 61
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.14 E-value=7.4e-11 Score=119.81 Aligned_cols=107 Identities=22% Similarity=0.137 Sum_probs=83.1
Q ss_pred hhhhhh-hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEc
Q 008152 308 RLKHAF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (576)
Q Consensus 308 ~L~~s~-relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~ls 385 (576)
....++ +++|++++|+|.+||+|.+|+ .||.|+|||+|+|+|+||+++++.+++..+++++.++|.++|++ -.+++.
T Consensus 97 ~~~~~~~~~lP~~~~qig~~fR~E~~~~-~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~~~~r~~ 175 (254)
T cd00774 97 NLLEFNRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSPENLRLT 175 (254)
T ss_pred HHHHHhCCCCCchhhhhchhhccccCcc-cceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 344455 499999999999999999998 99999999999999999999999999999999999999999986 334444
Q ss_pred cCCC--ccCCChHHHHHHHHHHHHHHHHcCCC
Q 008152 386 TRPE--KYLGDLATWEKAEAALTEALNEFGKP 415 (576)
Q Consensus 386 tr~~--~~~G~~~~~~~a~~~L~~~l~~~~~~ 415 (576)
..+. ..+=..+.|+.+...-...++..|+.
T Consensus 176 ~~~~~e~a~ya~~~~d~~~~~~~~w~e~~Gi~ 207 (254)
T cd00774 176 DHEKEELAHYANETLDYFYAFPHGFLELEGIA 207 (254)
T ss_pred ecccHhhhhhhHHHHHHHHHHhhhHHHHcCCC
Confidence 3332 21223456666655555566666654
No 62
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.08 E-value=1.2e-08 Score=109.93 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=104.0
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+ -|+. +......+.|++.+.++. ..-++....|.-|-.+.|....- ......+|+ |.|-
T Consensus 11 ~G~-rD~l----p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g---------~~~~~~~y~---f~D~- 72 (392)
T PRK12421 11 DGV-ADVL----PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAG---------QDLKLQTFK---LIDQ- 72 (392)
T ss_pred Ccc-cccC----HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCC---------ccchhceEE---EEcC-
Confidence 566 3553 123455677888888888 99999999998877777753100 111223566 3331
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
.+|. . .-|++.-+.+.-|++. .......|+|++++|.+||.+..+ .| |.|
T Consensus 73 ------~~g~--~---------l~LRpD~T~~iaR~~a---------~~~~~~~p~R~~Y~g~VfR~~~~~--~g--r~r 122 (392)
T PRK12421 73 ------LSGR--L---------MGVRADITPQVARIDA---------HLLNREGVARLCYAGSVLHTLPQG--LF--GSR 122 (392)
T ss_pred ------CCCc--E---------EEECCcCCHHHHHHHH---------hhcCCCCceEEEEeeeEEEcCCCc--CC--CcC
Confidence 1121 1 1244444444555421 000125699999999999998754 24 899
Q ss_pred cccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccC
Q 008152 343 RFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (576)
Q Consensus 343 eF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr 387 (576)
||+|.|+++|+.++...| ++++.++.++++.+|++ +.+.++++
T Consensus 123 Ef~Q~GvEiiG~~~~~aD--aEvi~l~~e~l~~lgi~~~~l~ig~~ 166 (392)
T PRK12421 123 TPLQLGAELYGHAGIEAD--LEIIRLMLGLLRNAGVPALHLDLGHV 166 (392)
T ss_pred ccceeceEEeCCCCchhH--HHHHHHHHHHHHHcCCCCeEEEeCCH
Confidence 999999999999877666 78999999999999997 99999875
No 63
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.06 E-value=9.7e-10 Score=119.20 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=109.9
Q ss_pred hhhcCCeeeee-eccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCc
Q 008152 312 AFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK 390 (576)
Q Consensus 312 s~relpl~l~~-vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~ 390 (576)
++++||+++++ .+.+||+|..+ ..|++|++||+|.++|.+|+++++.++..++++.+..+++.||++|++..++-|
T Consensus 330 s~~dLPlk~~~~s~~CFR~EaGs-trGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~adDP-- 406 (520)
T TIGR00415 330 DAEDKPIKFFDRSGWTYRWEAGG-AKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWTEVGDDP-- 406 (520)
T ss_pred ChhhCCeeEEEEecCeEeCCCCC-CCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCc--
Confidence 46789999999 56899999865 489999999999999999999999999999999999999999999988865433
Q ss_pred cCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCccc-ccceeEEEec------cccCceecceeeecccCCceeeeEEee
Q 008152 391 YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFY-GPKIDISVSD------ALKRKFQCATLQLDFQLPDRFNLGYSA 463 (576)
Q Consensus 391 ~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afy-gpkid~~~~d------~~gr~~~~~tiqld~~~~~rf~l~y~~ 463 (576)
|.+.. .+ .+.++..|- ..|.|+.+.- ..|+..|.++.+-| +.+.+||+.
T Consensus 407 Ff~~g------------------~k--~~~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~-hF~k~F~I~--- 462 (520)
T TIGR00415 407 FYLEG------------------RK--KEDRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVHGT-HFIEGFRIK--- 462 (520)
T ss_pred ccccc------------------cC--cccccccCcccceEEEEEEEccccCCCCCcEEEEeechhc-ccccccCcc---
Confidence 11110 00 001111121 2344544321 13556666666633 567888877
Q ss_pred cCCCcccccEEEEecccc-cHHHHHHHHHHhcCC---CCCC
Q 008152 464 EDEAKTERPVMIHRAILG-SVERMFAILLEHYKG---KWPF 500 (576)
Q Consensus 464 ~~~g~~~~P~ii~~a~~G-giERlia~L~E~~~g---~~P~ 500 (576)
+ +.. .+ +|.+++| |+||++++|+.+++. .||.
T Consensus 463 -~-~~~-~~--a~ttC~G~gleR~i~Ali~~HG~d~~~Wp~ 498 (520)
T TIGR00415 463 -D-AKG-LN--IWTGCTGIGISRWIVGFLAQKGFEFDDWHD 498 (520)
T ss_pred -c-CCC-Ce--EEEeeeeccHHHHHHHHHHHhCCChhhCCH
Confidence 1 221 22 3777777 899999999999864 5774
No 64
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=5.9e-09 Score=109.07 Aligned_cols=237 Identities=19% Similarity=0.239 Sum_probs=142.9
Q ss_pred CeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC-------
Q 008152 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP------- 388 (576)
Q Consensus 317 pl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~------- 388 (576)
.++.++++.+||....--..| |+|||+|+|.+|-|.=+|...+ ++|+..+.++++.||+. |.+++|+|.
T Consensus 150 sikRy~iAkVyRRd~P~mtrG--R~REFYQcDFDIAG~~d~M~pd-aE~lkiv~e~L~~l~Igd~~iKvNhRkiLdgmf~ 226 (518)
T KOG1936|consen 150 SIKRYHIAKVYRRDQPAMTRG--RYREFYQCDFDIAGQFDPMIPD-AECLKIVVEILSRLGIGDYGIKVNHRKILDGMFA 226 (518)
T ss_pred cceeeeEEEEEeccCchhhch--hhhhhhccCccccccCCCCCch-HHHHHHHHHHHhhcCccceEEEecHHHHHHHHHH
Confidence 478899999999886433345 9999999999999977774433 67999999999999997 999999872
Q ss_pred -----CccCCC---------hHHHHHHHH---------------------------------------------------
Q 008152 389 -----EKYLGD---------LATWEKAEA--------------------------------------------------- 403 (576)
Q Consensus 389 -----~~~~G~---------~~~~~~a~~--------------------------------------------------- 403 (576)
+..++. ..-|+.-..
T Consensus 227 v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~eal~dl 306 (518)
T KOG1936|consen 227 VCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKEALADL 306 (518)
T ss_pred HhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 111110 001322111
Q ss_pred -HHHHHHHHcCCCc--EEcC--CCC-ccc-ccceeEEEeccccCceeccee---ee------cc---cCCceeeeEEeec
Q 008152 404 -ALTEALNEFGKPW--QINE--GDG-AFY-GPKIDISVSDALKRKFQCATL---QL------DF---QLPDRFNLGYSAE 464 (576)
Q Consensus 404 -~L~~~l~~~~~~~--~~~~--g~~-afy-gpkid~~~~d~~gr~~~~~ti---ql------d~---~~~~rf~l~y~~~ 464 (576)
.|-++++.+|..- ..+. .-| .|| |--++.... |...+|++- |. +. ..++|||-....=
T Consensus 307 k~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~---~~~~~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv~mf 383 (518)
T KOG1936|consen 307 KQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLR---GLRLICPAGRYDQAGSTEPGGVGSVAAGGRYDNLVGMF 383 (518)
T ss_pred HHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeec---cccccCcchhhhccccccCCCccccccCcchhhHHHHh
Confidence 1112222333211 0111 011 133 221121110 000111110 00 00 0123333110000
Q ss_pred CCCcccccEEEEecccccHHHHHHHHHHhcCC---CCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCC-C
Q 008152 465 DEAKTERPVMIHRAILGSVERMFAILLEHYKG---KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-D 540 (576)
Q Consensus 465 ~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g---~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~-~ 540 (576)
+..+...|.+ +.+ + |+||++.+|.+...- ++- -.-.||+|...+........++.+.|+++||..++-.. .
T Consensus 384 ~~k~~~vPcv-G~S-~-GVeRiFsile~r~~~~~~~iR--~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~yk~~ 458 (518)
T KOG1936|consen 384 DKKGDKVPCV-GQS-V-GVERIFSILEQRAATVATKIR--TTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYLYKAN 458 (518)
T ss_pred ccccCcCCcc-cee-e-hHhHHHHHHHHHHHhhhhccc--cCceEEEEEecCCchHHHHHHHHHHHHhcCcchhhhhhcC
Confidence 0012356765 444 3 699999888775431 222 25579999998888888899999999999999997764 5
Q ss_pred CcHHHHHHHhHhcCCceEEEecce
Q 008152 541 RKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 541 ~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
-++-+++..|++.|+|+++|+|--
T Consensus 459 ~~~~~q~~~~e~~~ip~~vi~Ge~ 482 (518)
T KOG1936|consen 459 PKLLKQFQYAEEAGIPLAVILGEE 482 (518)
T ss_pred ccHHHHHHHHHhcCCCeEEEechh
Confidence 788999999999999999999864
No 65
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=98.99 E-value=1.7e-09 Score=91.46 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=58.3
Q ss_pred CceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 504 PRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 504 P~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|+||+|+|.+++..++|.++++.||+.|++|++|++..++++++++|++.|+|+++++|+-
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcc
Confidence 7899999999989999999999999999999999999999999999999999999999964
No 66
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=98.85 E-value=9e-09 Score=87.51 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=57.6
Q ss_pred CceEEEEeCCC---ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 504 PRQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 504 P~qV~Vipv~~---~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|+||+|+|.++ ....+|.++++.||++|++|++|++..+++++++.|++.|+||++++|+-
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCC
Confidence 78999999998 88899999999999999999999988999999999999999999999963
No 67
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=98.80 E-value=1.7e-08 Score=98.16 Aligned_cols=137 Identities=25% Similarity=0.324 Sum_probs=100.5
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe--EEEEEccCCCcc
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT--YELKLSTRPEKY 391 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~--~~l~lstr~~~~ 391 (576)
+.+|++++++|.+||.+.++. ++.|++||+|.++++++.+.+...++.++..++.++++.+|++ +.+...+.+
T Consensus 72 ~~~~~~lfeig~vfr~e~~~~--~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~--- 146 (211)
T cd00768 72 RKLPLRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPG--- 146 (211)
T ss_pred ccCCEEEEEEcceeecCCCcc--ccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEecCch---
Confidence 468999999999999987542 2568899999999999987653345788999999999999973 444322110
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeec-ccCCceeeeEEeecCCCccc
Q 008152 392 LGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLD-FQLPDRFNLGYSAEDEAKTE 470 (576)
Q Consensus 392 ~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld-~~~~~rf~l~y~~~~~g~~~ 470 (576)
..|. ++.|+..++.+.+..++..++++++.. .+...+||+.|..++ ++..
T Consensus 147 ----~~~~------------------------~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~-~~~~ 197 (211)
T cd00768 147 ----EFSP------------------------GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEA-LEYR 197 (211)
T ss_pred ----hhcc------------------------ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheeccc-cccc
Confidence 0000 134677788888888887778877633 344566999997665 6677
Q ss_pred ccEEEEecccccHHHH
Q 008152 471 RPVMIHRAILGSVERM 486 (576)
Q Consensus 471 ~P~ii~~a~~GgiERl 486 (576)
.|+++|++ ||+||+
T Consensus 198 ~p~~~~~~--~~~~R~ 211 (211)
T cd00768 198 YPPTIGFG--LGLERL 211 (211)
T ss_pred CceeecCc--cCccCC
Confidence 89999998 589995
No 68
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=98.79 E-value=4.5e-09 Score=77.45 Aligned_cols=43 Identities=44% Similarity=0.753 Sum_probs=32.9
Q ss_pred EEEEEeCC-eecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEe
Q 008152 250 ITVYRCGP-LVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (576)
Q Consensus 250 v~vy~~g~-~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiy 299 (576)
|++|++|+ ++|.|.||||+|||+|+.|+|++.++ .++.++|||
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~~-------~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGES-------KGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEEEE-------EETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEeEE-------EcCCcEEeC
Confidence 68999999 78999999999999999999985443 356788886
No 69
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.70 E-value=4e-08 Score=76.01 Aligned_cols=61 Identities=59% Similarity=0.917 Sum_probs=55.4
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
++|++++|+...++. ++|+.++++.++....+.+++|++||+++||++++..|++|+|++|
T Consensus 1 ~~i~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~~ 61 (61)
T cd01667 1 IKITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIITF 61 (61)
T ss_pred CEEEcCCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEeC
Confidence 367888998888888 9999999999887777889999999999999999999999999986
No 70
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=9.2e-08 Score=105.65 Aligned_cols=132 Identities=18% Similarity=0.333 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHh
Q 008152 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (576)
Q Consensus 153 vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~l 230 (576)
+-.||++|||..|+++++...=..|..+. ++.+.+||.. ...+|.++++++|..||++| +.|+...+++..+|+++
T Consensus 568 m~nHTaTHlLN~aLr~~l~~t~QkGSlV~-pdklRfDf~~-k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i 645 (895)
T KOG0188|consen 568 MRNHTATHLLNFALRQVLKGTDQKGSLVA-PDKLRFDFST-KGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKI 645 (895)
T ss_pred hhcchHHHHHHHHHHHhcccccccccccC-hhHeeeeccc-CCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcC
Confidence 33899999999999999932222244443 4889999975 44699999999999999999 99999999999999874
Q ss_pred hccCcchhhhccc-CCCCCcEEEEEeCC----eecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEe
Q 008152 231 FSDNNFKVEIIND-LPADKTITVYRCGP----LVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (576)
Q Consensus 231 F~~~~~K~~Ll~~-~~~~~~v~vy~~g~----~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiy 299 (576)
- +-. ....+ -| +.|+|+.+|. .+++|+|+|+.+||.|+.|.|....+ -.....||.
T Consensus 646 ~---glr-~v~~E~YP--dpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~~-------iakgirRiv 706 (895)
T KOG0188|consen 646 P---GLR-AVFDEVYP--DPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEEG-------IAKGIRRIV 706 (895)
T ss_pred C---Ccc-cccCCccC--CceEEEEeccccccceeecCCcccccccccceEEEechhh-------hhhceeEEE
Confidence 2 111 11222 22 5789999885 35889999999999999999986543 134566664
No 71
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.59 E-value=4.9e-08 Score=71.82 Aligned_cols=38 Identities=42% Similarity=0.843 Sum_probs=35.0
Q ss_pred EEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecceeec
Q 008152 250 ITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWR 287 (576)
Q Consensus 250 v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L 287 (576)
+++|++|++ .+.|.||||+||++|+.|+|++.++.+|.
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWG 39 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecC
Confidence 478999998 79999999999999999999999887776
No 72
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=98.36 E-value=1.4e-06 Score=72.83 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=54.5
Q ss_pred eEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 506 qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
+|+|+|.+++...+|.++++.||++|++|++|..+.+++++++.|++.|+|+++++|+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcH
Confidence 7899999988888999999999999999999987789999999999999999999984
No 73
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=2.2e-06 Score=91.98 Aligned_cols=143 Identities=26% Similarity=0.442 Sum_probs=98.9
Q ss_pred hcCCeeeeeeccceeccccC---CCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEE-ccCCC
Q 008152 314 AELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKL-STRPE 389 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g---~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~l-str~~ 389 (576)
.++|+++.-++..||.|... +..||+|+-+|+.-+.-.||.+++..++..+++....++++.|+++|++.. -|.
T Consensus 250 ~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctG-- 327 (429)
T COG0172 250 EDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTG-- 327 (429)
T ss_pred ccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeeccC--
Confidence 36899999999999999732 468999999999999999999999999999999999999999999976554 332
Q ss_pred ccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEecc----ccCceecceeeecccCCceeeeEEeecC
Q 008152 390 KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDA----LKRKFQCATLQLDFQLPDRFNLGYSAED 465 (576)
Q Consensus 390 ~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~----~gr~~~~~tiqld~~~~~rf~l~y~~~~ 465 (576)
-+|... .+++|+.+.-. .+.-..|+.+ -||| +.|+++.|..+.
T Consensus 328 -Dlgf~a------------------------------~kkYDlEvWlP~q~~yrEisScSnc-~DfQ-aRR~~~Ryr~~~ 374 (429)
T COG0172 328 -DLGFSA------------------------------AKKYDLEVWLPGQNKYREISSCSNC-TDFQ-ARRLNIRYRDKE 374 (429)
T ss_pred -CcCCcc------------------------------cCceeEEEEecCCCCceeeeeeecc-ccHH-HHHHhccccccc
Confidence 122110 23344443221 1122333333 4664 578999996543
Q ss_pred CCcccccEEEEecccc---cHHHHHHHHHHhcC
Q 008152 466 EAKTERPVMIHRAILG---SVERMFAILLEHYK 495 (576)
Q Consensus 466 ~g~~~~P~ii~~a~~G---giERlia~L~E~~~ 495 (576)
.|+.... | ++-| .+.|.+.+++|+|.
T Consensus 375 ~~k~~~v---h-TLNGsglA~~R~l~AilENyq 403 (429)
T COG0172 375 EGKREFV---H-TLNGSGLAVGRTLVAILENYQ 403 (429)
T ss_pred CCCcEEE---E-eccchHHHHHHHHHHHHHccc
Confidence 2333222 2 3333 58999999999864
No 74
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.25 E-value=2.2e-06 Score=65.72 Aligned_cols=59 Identities=31% Similarity=0.396 Sum_probs=53.1
Q ss_pred EEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEee
Q 008152 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 85 ~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
++.+++|..+++++ ++|+.|+++.++....+.+++|++||+++||++++..|+.|+|++
T Consensus 2 ~~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 2 IIFTPDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 56777888888888 999999999998777788999999999999999999999999985
No 75
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.16 E-value=3.6e-06 Score=85.77 Aligned_cols=68 Identities=28% Similarity=0.466 Sum_probs=60.1
Q ss_pred cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 008152 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (576)
Q Consensus 315 elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~ 388 (576)
++|+|++++|.+||++.++ .+ |.|||+|.|+|+||.+++..+ ++++.++.++++.+|++ +.+.++++.
T Consensus 80 ~~p~k~~y~g~vfR~e~~~--~g--~~re~~Q~g~Eiig~~~~~~d--aE~i~l~~~~l~~lg~~~~~i~l~~~~ 148 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQ--KG--RYREFYQVGVEIIGSDSPLAD--AEVIALAVEILEALGLKDFQIKINHRG 148 (261)
T ss_pred CCCeEEEEEcCEEecCCCC--CC--CccceEEeceeeeCCCChHHH--HHHHHHHHHHHHHcCCCceEEEECCHH
Confidence 5899999999999999865 23 899999999999999877655 78999999999999997 999999763
No 76
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.04 E-value=1.1e-05 Score=62.76 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=53.3
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEee
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
|-|.+++|+.++++. ++|+.++++.++......++++.+||+++|+++++.++++|++++
T Consensus 1 ~~~~~~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 347789999999888 999999999888777778999999999999999999999999874
No 77
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.1e-05 Score=85.26 Aligned_cols=159 Identities=22% Similarity=0.416 Sum_probs=106.7
Q ss_pred hcCCeeeeeeccceeccc--cC-CCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCc
Q 008152 314 AELPLRLADFGVLHRNEA--SG-ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK 390 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~--~g-~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~ 390 (576)
.++|+++.-++.+||.|. .| +-.||.||-+|.-.+.-+.|.+++..+++.+++.+..++|+.||++|++.- -|.+
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLgip~rvl~--m~S~ 340 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLGLPYRVLN--MPSG 340 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHhCCceeEec--CCch
Confidence 478999999999999997 23 447899999999988888899988888899999999999999999987542 1234
Q ss_pred cCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEee---cCCC
Q 008152 391 YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSA---EDEA 467 (576)
Q Consensus 391 ~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~---~~~g 467 (576)
.+|+... +++.+.- .=||-|.| |---.|+.+ .||| +.|+++.|.. .+ |
T Consensus 341 eLg~aAa------------kKyDiEA-WmPgrg~y-------------gEl~ScSNC-TDyQ-SRRL~IRy~~~k~~~-~ 391 (455)
T KOG2509|consen 341 ELGAAAA------------KKYDIEA-WMPGRGAY-------------GELVSCSNC-TDYQ-SRRLGIRYGQKKTND-G 391 (455)
T ss_pred hhCcHHH------------hhcchhh-hcCccccc-------------ccccccccc-hhHH-HhhhhhhcccccccC-C
Confidence 4554421 1111100 11443332 111223332 6775 5677777763 33 5
Q ss_pred cccccEEEEecccccHHHHHHHHHHhcC---C-CCCCCCCC
Q 008152 468 KTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSP 504 (576)
Q Consensus 468 ~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~laP 504 (576)
.....+++..+.. -+.|+|-+|+|+|. | ..|..|-|
T Consensus 392 ~~~yvHtLN~Tac-A~~R~l~aiLEnyQ~edGi~VPe~Lr~ 431 (455)
T KOG2509|consen 392 EKKYVHTLNGTAC-ATPRALCAILENYQTEDGIEVPEVLRP 431 (455)
T ss_pred ccceeeecchhhH-hhhHHHHHhHhhccCCCCccCCHhHHh
Confidence 5555555554444 59999999999973 3 56655544
No 78
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.02 E-value=1.6e-05 Score=83.33 Aligned_cols=68 Identities=28% Similarity=0.492 Sum_probs=60.2
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccC
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr 387 (576)
.+.|+|++++|.+||++..+ .| |.|||+|.|+|+||.+++..+ ++++.++.++++.+|++ +.+.++++
T Consensus 84 ~~~p~r~~y~g~VfR~~~~~--~g--r~re~~Q~g~Eiig~~~~~ad--aEvi~l~~~~l~~lg~~~~~i~l~~~ 152 (314)
T TIGR00443 84 RPLPLRLCYAGNVFRTNESG--AG--RSREFTQAGVELIGAGGPAAD--AEVIALLIEALKALGLKDFKIELGHV 152 (314)
T ss_pred CCCCeEEEEeceEeecCCCc--CC--CcccccccceEEeCCCCchhH--HHHHHHHHHHHHHcCCCCeEEEeCcH
Confidence 36799999999999999865 24 899999999999999888666 78999999999999996 89999865
No 79
>PRK07080 hypothetical protein; Validated
Probab=97.94 E-value=6.7e-05 Score=77.29 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=92.2
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCccCCChHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLAT 397 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~~~G~~~~ 397 (576)
..+.-.|..||+|.+ .++.|+.+|+|-+.=.+++++++.+--...++....+.+.||+++.+...+-| |.|....
T Consensus 153 ~~~dv~g~CFR~E~s---~dl~Rl~~F~mrE~V~iGt~e~v~~~r~~w~e~~~~l~~~LgL~~~ve~AnDP--FF~~~gk 227 (317)
T PRK07080 153 RLVDVASYCFRHEPS---LDPARMQLFRMREYVRIGTPEQIVAFRQSWIERGTAMADALGLPVEIDLANDP--FFGRGGK 227 (317)
T ss_pred cEEEeeeeeeccCCC---CCcHHHhheeeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCceeEeecCCc--cccccch
Confidence 344556999999985 47889999999999999999987654456788888889999999999888755 4443211
Q ss_pred HHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceeccee--eecccCCceeeeEEeecCCCcccccEEE
Q 008152 398 WEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATL--QLDFQLPDRFNLGYSAEDEAKTERPVMI 475 (576)
Q Consensus 398 ~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~ti--qld~~~~~rf~l~y~~~~~g~~~~P~ii 475 (576)
-++..+..+ .++.++ -+.+.+. +..-.|... +.| ..+.+||+... + | .| .
T Consensus 228 -~~a~~Qr~~-----~lKfEl------------~vpi~~~-~~~tA~~S~NyH~d-hFg~~f~I~~~--~-g---~~--a 279 (317)
T PRK07080 228 -IVAASQREQ-----NLKFEL------------LIPIYSD-APPTACMSFNYHMD-HFGLTWGIRTA--D-G---AV--A 279 (317)
T ss_pred -hhhhhhhhc-----cceeEE------------EEecCCC-CCceEEEEEehhhh-ccccccCcccC--C-C---CE--e
Confidence 011111000 112221 0111111 111222221 223 24667887642 2 2 22 3
Q ss_pred Eecccc-cHHHHHHHHHHhcCC---CCCC
Q 008152 476 HRAILG-SVERMFAILLEHYKG---KWPF 500 (576)
Q Consensus 476 ~~a~~G-giERlia~L~E~~~g---~~P~ 500 (576)
|.++.| |+||+..+|+.|++. .||.
T Consensus 280 hTgCvGFGlER~a~All~~hG~d~~~WP~ 308 (317)
T PRK07080 280 HTGCVGFGLERLALALFRHHGLDPAAWPA 308 (317)
T ss_pred EEeeeecCHHHHHHHHHHHhCCChhhccH
Confidence 667766 899999999999764 5774
No 80
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=97.93 E-value=5.6e-05 Score=75.92 Aligned_cols=142 Identities=15% Similarity=0.225 Sum_probs=100.7
Q ss_pred eccccccCCCcEEE-eecCChhhhHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHH
Q 008152 129 DMTRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDS 207 (576)
Q Consensus 129 dL~~~l~~d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~ 207 (576)
..+.||+...+|+. +|+...- --+.+||..|++.+.+.++|..+-+ .-++ +||.--+.++-.++|.+++..|++
T Consensus 85 ~~~~~iePGt~V~V~VD~qkR~-D~MQQHsGQHLitAvad~~fKlkTt-SWel---G~~~sa~e~~~~~mTaeqvaaieq 159 (415)
T KOG2105|consen 85 HVNDYIEPGTTVEVAVDEQKRM-DYMQQHSGQHLITAVADHLFKLKTT-SWEL---GRFRSAIELDTPSMTAEQVAAIEQ 159 (415)
T ss_pred ccCCCCCCCCeEEEEecHHHHh-HHHHHhcchhHHHHHHHhhhcccee-eeec---cceeeccccCCCCccHHHHHHHHH
Confidence 57789998888886 7665431 2355999999999999999954322 2222 467666665446789999999999
Q ss_pred HHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhccc--CC--CCCcEEEEEeCCee-cccCCCCCCCCCCcccEEEEe
Q 008152 208 EADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIIND--LP--ADKTITVYRCGPLV-DLCRGPHIPNTSFVKGFGCLK 280 (576)
Q Consensus 208 ~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~--~~--~~~~v~vy~~g~~~-D~c~Gphvp~Tg~Ik~f~l~~ 280 (576)
.+|+.| ..|....+.+.++- .++.... .| ....+++..+|+.. ..|.|+||.+|+.|+.++|+.
T Consensus 160 svNe~I~d~~~~~v~E~sl~d~---------eVeqVS~~~~~D~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILg 230 (415)
T KOG2105|consen 160 SVNEKIRDRLPVNVRELSLDDP---------EVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILG 230 (415)
T ss_pred HHHHHHHhccchheeecccCCc---------chhhccCCCCcccccCceEEEeecCccCCccccccccchhhcceEEEee
Confidence 999999 55655555554321 1111111 12 23468999999865 569999999999999999987
Q ss_pred ecce
Q 008152 281 ASSA 284 (576)
Q Consensus 281 ~~~g 284 (576)
...|
T Consensus 231 tekg 234 (415)
T KOG2105|consen 231 TEKG 234 (415)
T ss_pred cccc
Confidence 7665
No 81
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.59 E-value=0.00014 Score=77.95 Aligned_cols=64 Identities=27% Similarity=0.320 Sum_probs=55.5
Q ss_pred cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCch-hHHHHHHHHHHHHHHHHHHhCCe-EEEEEccC
Q 008152 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES-QIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (576)
Q Consensus 315 elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~-~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr 387 (576)
..|.|++++|.+||++ .| |.|||+|.|+++|+..+ ...| +|++.++.++++.+|++ +.+.++++
T Consensus 80 ~~p~R~~Y~g~VfR~~-~g------r~rEf~Q~GvEiiG~~~~~~aD--aEvi~l~~~~L~~lgl~~~~i~ig~~ 145 (373)
T PRK12295 80 GEPARYAYLGEVFRQR-RD------RASEFLQAGIESFGRADPAAAD--AEVLALALEALAALGPGDLEVRLGDV 145 (373)
T ss_pred CCCeEEEEEccEEECC-CC------CCCcceEeeEEeeCCCCCccch--HHHHHHHHHHHHHcCCCceEEEeCCH
Confidence 5689999999999999 55 79999999999999754 4444 67999999999999997 99999875
No 82
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00025 Score=78.17 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=103.0
Q ss_pred HHHHHHcCCCcEEcCCCCccccc--ceeEEEeccccCceecceee-ecccCCcee-eeEEeecCCCcccccEEEEecccc
Q 008152 406 TEALNEFGKPWQINEGDGAFYGP--KIDISVSDALKRKFQCATLQ-LDFQLPDRF-NLGYSAEDEAKTERPVMIHRAILG 481 (576)
Q Consensus 406 ~~~l~~~~~~~~~~~g~~afygp--kid~~~~d~~gr~~~~~tiq-ld~~~~~rf-~l~y~~~~~g~~~~P~ii~~a~~G 481 (576)
.+.+..+|+.+..-+.+.-|-|- ..++++.-..|+.-|++|.+ +--+....| ++.|.+.+.+ .-..+|..++|
T Consensus 182 ~~if~~i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~---~~~~v~t~s~~ 258 (500)
T COG0442 182 SRIFLRLPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEG---ELEYVHTTSYG 258 (500)
T ss_pred HHHHHhCCceEEeecccCCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCccccccc---cceEecccceE
Confidence 34444556555444433222222 23454444346778887775 112334455 6666544311 12233666677
Q ss_pred cHHHHHHHHHHhcC---C-CCCCCCCCceEEEEeCCC-------ChHHHHHHHHHHHHhCCcEEEEeCC-CCcHHHHHHH
Q 008152 482 SVERMFAILLEHYK---G-KWPFWLSPRQAIVCPVSE-------KSQPYALQVRDHIYRAGYYVDVDTT-DRKIQKKVTT 549 (576)
Q Consensus 482 giERlia~L~E~~~---g-~~P~~laP~qV~Vipv~~-------~~~~~a~~i~~~Lr~~Gi~v~vD~~-~~slgkkir~ 549 (576)
=.+|.+++++..++ | ..|+-+||.||.++|..- ...++++++...|...+++|..|++ ..+.|.|+..
T Consensus 259 ~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~ 338 (500)
T COG0442 259 ISTRIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNI 338 (500)
T ss_pred EEeeeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeee
Confidence 67777766655443 3 799999999999999751 2568899999999999999999965 6999999999
Q ss_pred hHhcCCceEEEecce
Q 008152 550 SNFEIKNPHYFYCPM 564 (576)
Q Consensus 550 A~~~g~p~~iIiGp~ 564 (576)
++.+|+|.++-+||-
T Consensus 339 ~e~ieVghif~lG~k 353 (500)
T COG0442 339 WEGIEVGHIFELGTK 353 (500)
T ss_pred eeccccCEEEEECch
Confidence 999999888777774
No 83
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.12 E-value=0.00084 Score=70.04 Aligned_cols=68 Identities=25% Similarity=0.364 Sum_probs=59.1
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHH-HhCCe-EEEEEccC
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYR-IFGFT-YELKLSTR 387 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~-~lG~~-~~l~lstr 387 (576)
...|.|++++|.+||++..+. | +.|||+|.++++|+.++...| +|++.++.++++ .+|++ +.+.+++.
T Consensus 85 ~~~~~r~~y~g~vfR~~~~~~--g--~~re~~Q~g~Eiig~~~~~~d--aEvi~l~~e~l~~~l~~~~~~i~i~h~ 154 (311)
T PF13393_consen 85 LPRPKRYYYIGPVFRYERPGK--G--RPREFYQCGFEIIGSSSLEAD--AEVIKLADEILDRELGLENFTIRINHT 154 (311)
T ss_dssp SSSSEEEEEEEEEEEEETTTT--T--BESEEEEEEEEEESSSSHHHH--HHHHHHHHHHHHHHHTTTSEEEEEEEH
T ss_pred cCCCceEEEEcceeeccccCC--C--CCceeEEEEEEEECCCCHHHH--HHHHHHHHHHHHhhcCCCCcEEEEcCc
Confidence 467899999999999997652 3 899999999999999966655 789999999997 99996 99999864
No 84
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.10 E-value=0.0007 Score=69.93 Aligned_cols=141 Identities=15% Similarity=0.078 Sum_probs=89.6
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+. |+. +-.....+.|++.+.++. ..-++.+..|.-|-.+.|.. ...-.+|++ .|-
T Consensus 9 ~G~r-D~l----p~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-------------~~~~~~y~~---~D~- 66 (281)
T PRK12293 9 QGSK-LYF----GKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI-------------ADEKELIRF---SDE- 66 (281)
T ss_pred Cccc-ccC----cHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc-------------cchhceEEE---ECC-
Confidence 6663 553 123455667777777777 77777777776544433311 001124442 221
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
+|. -.-|++.-+.++.|++.. .+. -...|+|++++|++||++. |
T Consensus 67 -------~g~-----------~l~LRpD~T~~iaR~~a~------~~~--~~~~p~r~~Y~g~vfR~~~----------r 110 (281)
T PRK12293 67 -------KNH-----------QISLRADSTLDVVRIVTK------RLG--RSTEHKKWFYIQPVFRYPS----------N 110 (281)
T ss_pred -------CCC-----------EEEECCcCCHHHHHHHHH------hcc--cCCCceeEEEeccEEecCC----------C
Confidence 121 122454444455554310 000 1257999999999999873 8
Q ss_pred cccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccC
Q 008152 343 RFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTR 387 (576)
Q Consensus 343 eF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr 387 (576)
||+|.|+|++|.++. ++++.++.++++.+|+++.+.++++
T Consensus 111 Ef~Q~GvEliG~~~~-----~Evi~la~~~l~~lgl~~~i~ig~~ 150 (281)
T PRK12293 111 EIYQIGAELIGEEDL-----SEILNIAAEIFEELELEPILQISNI 150 (281)
T ss_pred cccccCeEeeCCCCH-----HHHHHHHHHHHHHcCCCCEEEECCH
Confidence 999999999999875 3689999999999999877888875
No 85
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.64 E-value=0.0029 Score=73.00 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=61.0
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCC
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~ 147 (576)
+.|-|.-|+|..+..+. |.||.|.|-.+........+.|+|||++++|+++|.+...||++|-+.
T Consensus 386 d~v~VfTP~G~v~~LP~-GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~Gd~VeIiT~~~ 450 (702)
T PRK11092 386 DEIYVFTPEGRIVELPA-GATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG 450 (702)
T ss_pred ceEEEECCCCCEEeCCC-CCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCCCEEEEEeCCC
Confidence 56889899999999999 999999999999999999999999999999999999999999998654
No 86
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=96.15 E-value=0.011 Score=67.44 Aligned_cols=65 Identities=20% Similarity=0.365 Sum_probs=61.1
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCC
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~ 147 (576)
+.|-|.-|.|.+++.+. |+||.|.|-.+.....+.++.|+|||++.+|+++|++...||+++-+.
T Consensus 387 d~VyvfTPkG~vi~LP~-GatplDFAY~vHt~iG~~c~gAkVnG~ivpl~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 387 DRVYVFTPKGKVIDLPK-GATPLDFAYAVHTDIGHRCIGAKVNGRIVPLTTKLQTGDQVEIITSKH 451 (701)
T ss_pred ceEEEECCCCCEEeCCC-CCcchhhhhhhhchhcceeeEEEECCEEeccceecCCCCEEEEEeCCC
Confidence 56888889999999999 999999999999999999999999999999999999999999999876
No 87
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=96.13 E-value=0.0079 Score=65.08 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=50.0
Q ss_pred cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEE
Q 008152 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK 383 (576)
Q Consensus 315 elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~ 383 (576)
.+|++++++|.+||+|..+. + +++||+|.|+.+++.+....+ +..++..+++.||++|++.
T Consensus 316 ~~PqKIFEIGkVFR~E~~~~--t--hlREF~QL~~eIaG~~atfaD----lealL~e~Lr~LGIdfeit 376 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESDGK--E--HLEEFTMLNFCQMGSGCTREN----LEAIIKDFLDHLEIDFEIV 376 (453)
T ss_pred cCCeeEEEEcCeEecCCCCC--C--CcCeEEEEEEEEECCCCCHHH----HHHHHHHHHHHCCCceEEe
Confidence 67999999999999997542 3 899999999999998755443 4468899999999986653
No 88
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=96.05 E-value=0.0048 Score=66.07 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=77.6
Q ss_pred CCCCCCCCCc---ccEEEEeecce-eecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccce
Q 008152 264 GPHIPNTSFV---KGFGCLKASSA-YWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLT 339 (576)
Q Consensus 264 Gphvp~Tg~I---k~f~l~~~~~g-~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLi 339 (576)
.|....+|.+ +.|++....++ .-|+..-+..+.|++ .+.....|.|+++.|.+||.. ++. .|
T Consensus 48 d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~----------~~~~~~~P~Rl~Y~G~Vfr~~-~~~-~g-- 113 (390)
T COG3705 48 DPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIH----------ATLLAGTPLRLSYAGKVFRAR-EGR-HG-- 113 (390)
T ss_pred hhhhhccchhhhhhheEEecCCCCeEEecccccHHHHHHH----------HHhcCCCCceeeecchhhhcc-hhc-cC--
Confidence 3566666666 56777765543 334444444455543 222334899999999999998 443 23
Q ss_pred ecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEcc
Q 008152 340 RVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLST 386 (576)
Q Consensus 340 RvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lst 386 (576)
+-.||+|.++|.++.++...| ++++..+..+++.+|+. +++.+.+
T Consensus 114 ~~~Ef~QaGiEllG~~~~~AD--aEvi~la~~~L~~~gl~~~~l~LG~ 159 (390)
T COG3705 114 RRAEFLQAGIELLGDDSAAAD--AEVIALALAALKALGLADLKLELGH 159 (390)
T ss_pred cccchhhhhhHHhCCCcchhh--HHHHHHHHHHHHHcCCcCeEEEecc
Confidence 677999999999999766556 77999999999999987 9999976
No 89
>PRK07440 hypothetical protein; Provisional
Probab=95.90 E-value=0.042 Score=44.61 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=50.4
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEee----ccccccCCCcEEEeec
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~ve~l~~ 145 (576)
..|+|++ +|+.++... ++|+.|+.+.+.. ....+++.+||++.+ -.++|.++.+||+++|
T Consensus 3 ~~m~i~v-NG~~~~~~~-~~tl~~lL~~l~~--~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 3 NPITLQV-NGETRTCSS-GTSLPDLLQQLGF--NPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred CceEEEE-CCEEEEcCC-CCCHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 3588888 788888887 8999999987653 457788899999998 8888999889999886
No 90
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=95.77 E-value=0.039 Score=43.93 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=46.6
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEee----ccccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~ve~l~~ 145 (576)
++|++ +|+.++.++ ++|+.|+...+.- ...-+++.+||++++ .+.+|.++.+||++.+
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~lL~~l~~--~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 1 MNIQL-NGEPRELPD-GESVAALLAREGL--AGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHhcCC--CCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 35677 788888888 8999999988753 334455569999987 8999999999999875
No 91
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.75 E-value=0.015 Score=67.29 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=60.6
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCC
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~ 147 (576)
+.|-|.-|+|+.+..+. |+||.|.|-.+........+.|+|||+.++|+++|++...||+++-+.
T Consensus 404 d~V~VfTPkG~~~~Lp~-gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l~~~L~~GD~VeIits~~ 468 (743)
T PRK10872 404 DRVYVFTPKGDVVDLPA-GSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQ 468 (743)
T ss_pred CeEEEECCCCCeEEcCC-CCcHHHHHHHHhHHHHhhceEEEECCEECCCCcCCCCCCEEEEEeCCC
Confidence 56888889999999999 999999999999888999999999999999999999999999998654
No 92
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.64 E-value=0.02 Score=66.28 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=61.2
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCCh
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSD 148 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~ 148 (576)
+.|-|.-|+|..+..+. |+||.|+|-.+........+.|+|||+.++|+++|++...||+++-+..
T Consensus 360 ~~i~vfTPkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~~ 425 (683)
T TIGR00691 360 EEIYVFTPKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNS 425 (683)
T ss_pred CceEEECCCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCCC
Confidence 67888889999999999 9999999999998889999999999999999999999999999987653
No 93
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=95.55 E-value=0.06 Score=43.48 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=49.7
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEee----ccccccCCCcEEEeec
Q 008152 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (576)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~ve~l~~ 145 (576)
+|+|.+ +|+..+... ++|+.|+..++. +...-+++.+||++.+ .+..+++...||++.+
T Consensus 2 ~m~i~~-ng~~~e~~~-~~tv~dLL~~l~--~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 2 PMTIQL-NGKEVEIAE-GTTVADLLAQLG--LNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred cEEEEE-CCEEEEcCC-CCcHHHHHHHhC--CCCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 578888 588888887 699999998875 4467889999999999 9999998779998875
No 94
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=95.26 E-value=0.027 Score=60.96 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=49.6
Q ss_pred hhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEE
Q 008152 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK 383 (576)
Q Consensus 313 ~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~ 383 (576)
+.++|++++++|.+||+|..|. .+++||+|.++.+++.+... .++..++.++++.||++|.+.
T Consensus 278 ~~~~P~RIFEIG~VFR~E~~g~----~hlrEf~Ql~~~iiGs~~~f----~dL~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 278 ILPDPIKIFEIGPCYRKESDGK----EHLEEFTMVNFCQMGSGCTR----ENLENIIDDFLKHLGIDYEII 340 (417)
T ss_pred cccCCeeEEEEeceEecCCCCC----CCcceEEEEEEEEeCCchHH----HHHHHHHHHHHHHCCCCcEEe
Confidence 4578999999999999997653 27999999999998765332 336688888999999875444
No 95
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.98 E-value=0.079 Score=42.95 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=47.4
Q ss_pred CeEEEeCCCc----EEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeec
Q 008152 83 PIKITLPDGS----VKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 83 ~I~v~l~dg~----~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
+|+|++ +|+ .++..+ ++|+.|+.+++.-. ...++..+||++..-+++|.++.+|+++.+
T Consensus 4 mm~v~v-ng~~~~~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKV-IGRGIEKEIEWRK-GMKVADILRAVGFN--TESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEE-eccccceEEEcCC-CCcHHHHHHHcCCC--CccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 478888 454 555666 89999999988643 466888899999989999999999999875
No 96
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=94.48 E-value=0.14 Score=41.19 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=46.4
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeecc----ccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~----~~l~~d~~ve~l~~ 145 (576)
++|++ +|+.++.+...+|+.|+.+.+.- ....+++.+|+++.+=+ .+|.++.+||+++|
T Consensus 1 m~I~v-NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 1 MNLKI-NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CEEEE-CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 46777 77888877723789999988753 45678888999998766 88999999999986
No 97
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=94.42 E-value=0.11 Score=41.23 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=45.2
Q ss_pred EEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeecc----ccccCCCcEEEeecC
Q 008152 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTFD 146 (576)
Q Consensus 86 v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~----~~l~~d~~ve~l~~~ 146 (576)
|++ +|+.++.+. ++|+.++...+... ...++..|||++.+.. .+|.++.+|+++.+-
T Consensus 2 i~i-Ng~~~~~~~-~~tv~~ll~~l~~~--~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 2 ITV-NGEPREVEE-GATLAELLEELGLD--PRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred EEE-CCeEEEcCC-CCCHHHHHHHcCCC--CCcEEEEECCEEcCHHHcCceecCCCCEEEEEEec
Confidence 444 788888887 89999999888643 3445666999999888 899998899998753
No 98
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=94.30 E-value=0.15 Score=40.43 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=45.0
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeec----cccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~ve~l~~ 145 (576)
++|++ +|+.++.+. ++|+.++...+... +-++..+||++++- ..+|.++.+|+++.+
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 1 MDIQL-NQQTLSLPD-GATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CEEEE-CCEEEECCC-CCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 45677 788888887 89999999887642 34677899999864 678888889999875
No 99
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=94.28 E-value=0.18 Score=40.22 Aligned_cols=58 Identities=7% Similarity=0.133 Sum_probs=45.4
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEee----ccccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~ve~l~~ 145 (576)
++|++ +|+.++.+. ++|+.++.++++. ..+.+++.+|+++.+ -.++|.++.+|+++.+
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF-NDQPMQCAA-GQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 45677 788888887 8999999988754 345678889999965 4457888889999875
No 100
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=94.09 E-value=0.18 Score=40.01 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=45.1
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeec----cccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~ve~l~~ 145 (576)
|+|++ +|+.++. . .+|+.++...+.. ....+++.+|+++++- +++|.+..+|+++.+
T Consensus 1 m~i~~-Ng~~~~~-~-~~tl~~Ll~~l~~--~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV-NGETLQT-E-ATTLALLLAELDY--EGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE-CCeEEEc-C-cCcHHHHHHHcCC--CCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 46777 6777776 4 5799999988753 3467888899999986 779999999999876
No 101
>PRK06437 hypothetical protein; Provisional
Probab=93.06 E-value=0.33 Score=39.03 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=40.9
Q ss_pred cEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecC
Q 008152 92 SVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFD 146 (576)
Q Consensus 92 ~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~ 146 (576)
+.++.+. ++|+.|+++.+.-. .+. +++.+||++.+.+++|.++.+|+++.+-
T Consensus 13 ~~~~i~~-~~tv~dLL~~Lgi~-~~~-vaV~vNg~iv~~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 13 KTIEIDH-ELTVNDIIKDLGLD-EEE-YVVIVNGSPVLEDHNVKKEDDVLILEVF 64 (67)
T ss_pred eEEEcCC-CCcHHHHHHHcCCC-Ccc-EEEEECCEECCCceEcCCCCEEEEEecc
Confidence 4566666 89999999988653 334 4555999999999999988899998763
No 102
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=92.91 E-value=0.56 Score=39.55 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=47.7
Q ss_pred CCCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEee----ccccccCCCcEEEeec
Q 008152 81 HDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (576)
Q Consensus 81 ~~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~ve~l~~ 145 (576)
+.+|+|++ +|+.++..+ ++|+.++...+. .....++..+||++.+ -+..|.++..||+++|
T Consensus 16 ~~~m~I~V-NG~~~~~~~-~~tl~~LL~~l~--~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 16 MVLITISI-NDQSIQVDI-SSSLAQIIAQLS--LPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CceEEEEE-CCeEEEcCC-CCcHHHHHHHcC--CCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 35788888 788888888 899999998874 4456777789999873 3455777779999876
No 103
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=92.68 E-value=0.15 Score=56.35 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=46.0
Q ss_pred CCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe
Q 008152 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT 379 (576)
Q Consensus 316 lpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~ 379 (576)
.|++++++|.+||++.-.. .+.+||+|.|+.+++.+.. +.+++.++..+|+.+|+.
T Consensus 356 ~P~k~fsigrVfR~d~~Da----tH~~eFhQ~Eg~vi~~~~s----~~~L~~~l~~f~~~lG~~ 411 (494)
T PTZ00326 356 KPKKYFSIDRVFRNETLDA----THLAEFHQVEGFVIDRNLT----LGDLIGTIREFFRRIGIT 411 (494)
T ss_pred CCceEEecCCEecCCCCCC----CcCceeEEEEEEEEeCCCC----HHHHHHHHHHHHHhcCCC
Confidence 3899999999999997321 2899999999999987753 245788899999999984
No 104
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=92.18 E-value=0.55 Score=48.39 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=53.4
Q ss_pred CCceEEEEeCCCChH-HHHHHHHHHHHhCCcEEEE-eCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 503 SPRQAIVCPVSEKSQ-PYALQVRDHIYRAGYYVDV-DTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 503 aP~qV~Vipv~~~~~-~~a~~i~~~Lr~~Gi~v~v-D~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
+-.+|.|+.++.... ....+|.+.|.++||.+++ -+...++-..+..|...|++|++||=.
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq 66 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQ 66 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEec
Confidence 347899999998776 8899999999999999999 333469999999999999999999865
No 105
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=91.58 E-value=0.47 Score=37.82 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=42.9
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEe---eccccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLW---DMTRPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~---dL~~~l~~d~~ve~l~~ 145 (576)
++|++ +|+.++..+ ++|+.|+...++- ...-++..+||++. +....|.++.+|+++.+
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~ll~~l~~--~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 1 MIVVV-NEEQVEVDE-QTTVAALLDSLGF--PEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred CEEEE-CCEEEEcCC-CCcHHHHHHHcCC--CCCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 46777 788888887 8999999988753 45667777888733 22235888889999875
No 106
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=91.39 E-value=0.64 Score=36.79 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=42.2
Q ss_pred CCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEee----ccccccCCCcEEEeec
Q 008152 90 DGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (576)
Q Consensus 90 dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~ve~l~~ 145 (576)
+|+.++.+. ++|+.|+.+.++.. ...++..+||++.+ -+++|.++.+|+++.+
T Consensus 4 Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVED-GLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCC-CCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 788888887 89999999987644 46677789999873 3457888889999875
No 107
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=87.99 E-value=1.2 Score=46.66 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=46.8
Q ss_pred eEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEee----ccccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~d----L~~~l~~d~~ve~l~~ 145 (576)
|+|++ +|+.++... ++|+.|+.+.++-. ..-++..|||++++ -+++|.++.+||++.+
T Consensus 1 M~I~V-NGk~~el~e-~~TL~dLL~~L~i~--~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRL-NGEPRQVPA-GLTIAALLAELGLA--PKKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CEEEE-CCEEEecCC-CCcHHHHHHHcCCC--CCeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 46777 788888887 89999999887543 44555569999998 7779999999999987
No 108
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.96 E-value=0.75 Score=51.10 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=52.1
Q ss_pred CCCCCceeEeccccCChhhhhhhhhc--CCeeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 290 KDRESLQRVYGISYPDKKRLKHAFAE--LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 290 p~~~~lqRiyg~~fp~~~~L~~s~re--lpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
|+.-.+-.+| +.|++|+|+.-.-- --=|.+|+..+||.|-.. .+ |--||+|.|+|. |++.+.+.+-+.
T Consensus 182 PSRv~~G~FY--ALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlR--aD--RQPEFTQiD~EmSF~~~edv~~~~E--- 252 (585)
T COG0173 182 PSRVHPGKFY--ALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLR--AD--RQPEFTQIDLEMSFVDEEDVMELIE--- 252 (585)
T ss_pred ccccCCCcee--ecCCCHHHHHHHHHHhcccceeeeeeeecccccc--cc--cCCcceeEeEEeecCCHHHHHHHHH---
Confidence 3444455566 78888888653221 012789999999999743 23 889999999997 888777665433
Q ss_pred HHHHHHHHH
Q 008152 367 EFIDYAYRI 375 (576)
Q Consensus 367 ~~~~~i~~~ 375 (576)
.++..+++.
T Consensus 253 ~l~~~vf~~ 261 (585)
T COG0173 253 KLLRYVFKE 261 (585)
T ss_pred HHHHHHHHH
Confidence 455566653
No 109
>PRK01777 hypothetical protein; Validated
Probab=87.93 E-value=1.9 Score=37.17 Aligned_cols=57 Identities=7% Similarity=-0.088 Sum_probs=41.3
Q ss_pred EEEeecCCCCHHHHHhhhccccccc-e----EEEEECCEEeeccccccCCCcEEEe---ecCChhh
Q 008152 93 VKEGKRWETSPMDIAQGISKSLAAN-A----LISMVNGVLWDMTRPLEADCDLKLF---TFDSDEG 150 (576)
Q Consensus 93 ~~~~~~~~ttp~dia~~i~~~~~~~-~----v~a~Vng~l~dL~~~l~~d~~ve~l---~~~~~eG 150 (576)
..+++. |||..|+++..+-....+ + ...-|||+..+++++|.....||+. +.|-.+.
T Consensus 20 ~l~vp~-GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrPL~~DPk~~ 84 (95)
T PRK01777 20 RLTLQE-GATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRPLLADPKEL 84 (95)
T ss_pred EEEcCC-CCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecCCCCCHHHH
Confidence 355666 999999998876432221 2 3556899999999999999899974 4454443
No 110
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=86.23 E-value=1.2 Score=49.78 Aligned_cols=61 Identities=20% Similarity=0.380 Sum_probs=47.9
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEE
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YEL 382 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l 382 (576)
...|++++++|.+||++.... + +++||+|.++.+.+.+-. +.++..++..+++.+|++ +++
T Consensus 347 ~~~p~rlFeiGrVFR~e~~d~--~--~l~Ef~ql~~~i~G~~~~----f~elkg~l~~ll~~lGi~~~~~ 408 (489)
T PRK04172 347 PEPPQKYFSIGRVFRPDTIDA--T--HLPEFYQLEGIVMGEDVS----FRDLLGILKEFYKRLGFEEVKF 408 (489)
T ss_pred CCCCeEEEEecceEcCCCCCc--c--cCCchheEEEEEEeCCCC----HHHHHHHHHHHHHHhCCceEEE
Confidence 367999999999999986321 1 579999999999997522 356888999999999995 443
No 111
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=85.19 E-value=1.3 Score=36.54 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=40.8
Q ss_pred EEEeecCCCCHHHHHhhhccccccceEEEEE-------CCEEeeccccccCCCcEEEe
Q 008152 93 VKEGKRWETSPMDIAQGISKSLAANALISMV-------NGVLWDMTRPLEADCDLKLF 143 (576)
Q Consensus 93 ~~~~~~~~ttp~dia~~i~~~~~~~~v~a~V-------ng~l~dL~~~l~~d~~ve~l 143 (576)
.+..+. |+|+.|+|..+.....+....|.| +|+...++++|++...|+++
T Consensus 18 ~liL~~-GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~ 74 (75)
T cd01666 18 PVILRR-GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIV 74 (75)
T ss_pred CEEECC-CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEe
Confidence 455666 999999999998766666666664 89999999999988888876
No 112
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=82.77 E-value=2.6 Score=34.37 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=38.2
Q ss_pred CCCHHHHHhhhccccc------cceEEEEECCEEeeccccccCCCcEEEeec
Q 008152 100 ETSPMDIAQGISKSLA------ANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~------~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
++|+.|+.+.+...++ .+.+++-|||+.++.+.+|.++.+|.++..
T Consensus 25 ~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 25 GATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCC
Confidence 7899999988875432 457788899999999999999999998753
No 113
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=81.67 E-value=3 Score=34.47 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=38.6
Q ss_pred EEeecCCCCHHHHHhhhccccccce---EEEEECCEEeeccccccCCCcEEEee
Q 008152 94 KEGKRWETSPMDIAQGISKSLAANA---LISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 94 ~~~~~~~ttp~dia~~i~~~~~~~~---v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
...+. |+|+.|.|..+.....+.. +.++ |++...++++|++...+++++
T Consensus 25 ~~l~~-GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 25 FLLPK-GSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred EEECC-CCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 34455 9999999999887665553 3456 999999999999988888874
No 114
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=79.27 E-value=4.3 Score=32.70 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=41.1
Q ss_pred EeecCCCCHHHHHhhhcccccc----ceEEEEECCEEeec---cccccCCCcEEEeec
Q 008152 95 EGKRWETSPMDIAQGISKSLAA----NALISMVNGVLWDM---TRPLEADCDLKLFTF 145 (576)
Q Consensus 95 ~~~~~~ttp~dia~~i~~~~~~----~~v~a~Vng~l~dL---~~~l~~d~~ve~l~~ 145 (576)
.... ++|+.|+.+.+...++. ..++..|||++.+. +.+|..+.+|.++..
T Consensus 17 ~~~~-~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 17 EVPE-GSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EESS-TSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred ecCC-CCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 3344 89999999999876642 67888899999999 999999999998864
No 115
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=79.11 E-value=3.3 Score=42.69 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=42.1
Q ss_pred CCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EE-EEEcc
Q 008152 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YE-LKLST 386 (576)
Q Consensus 316 lpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~-l~lst 386 (576)
.|.|+++.|++||++. +|+|.++|+++....++ .+++.++.+.+..+|.. +. +.++.
T Consensus 83 ~~~Rl~Y~g~VfR~~~-----------~~~Q~GvEliG~~~~a~---~e~l~la~~~l~~~g~~~~~~i~lGh 141 (272)
T PRK12294 83 AATKVAYAGLIIRNNE-----------AAVQVGIENYAPSLANV---QQSFKLFIQFIQQQLRDNVHFVVLGH 141 (272)
T ss_pred CCceEEEeccEeccCC-----------CcceeceEEECCCchhH---HHHHHHHHHHHHHhCCCCCcEEEecc
Confidence 3569999999999873 38999999999543322 45678888999998654 43 55653
No 116
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=77.51 E-value=8 Score=30.17 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=41.0
Q ss_pred EEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEee
Q 008152 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 85 ~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
+|.+ +|+.++... ++|++++.+.+.+. .=+..+||-...=+.+|.+..+|-|+.
T Consensus 2 ~I~v-N~k~~~~~~-~~tl~~lr~~~k~~----~DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 2 KIKV-NEKEIETEE-NTTLFELRKESKPD----ADIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred EEEE-CCEEEEcCC-CcCHHHHHHhhCCC----CCEEEEcCcccCCccccCCCCEEEEEe
Confidence 5666 778877776 89999999887653 224578998888888888877887763
No 117
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=76.85 E-value=4.7 Score=33.29 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=37.8
Q ss_pred EEeecCCCCHHHHHhhhcccc---cc--ceEEEEECCEEeeccccccCCCcEEEeec
Q 008152 94 KEGKRWETSPMDIAQGISKSL---AA--NALISMVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 94 ~~~~~~~ttp~dia~~i~~~~---~~--~~v~a~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
++.+. ++|+.++.+.+...+ .. ..++.-||++..+.+.+|.++.+|.++..
T Consensus 23 ~~~~~-~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 23 LELPA-GSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIPP 78 (82)
T ss_pred EECCC-CCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeCC
Confidence 34444 788999988875432 11 34566799999999999999999998753
No 118
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=75.39 E-value=3.2 Score=42.91 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=33.1
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
+++++|..||+|.++. + |-.||+|.|+|.-..+ +++.+++.+++
T Consensus 71 ~v~~i~~~fR~e~~~~--~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li 115 (280)
T cd00777 71 RYFQIARCFRDEDLRA--D--RQPEFTQIDIEMSFVDQEDIMSLIEGLL 115 (280)
T ss_pred cEEEeccceeCCCCCC--C--ccceeEEeEeeeccCCHHHHHHHHHHHH
Confidence 8999999999998763 3 6679999999975444 56666544443
No 119
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=73.61 E-value=17 Score=36.59 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=56.0
Q ss_pred ccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 471 RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 471 ~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~------------~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
.|+-++++. -+.|+.+..+ +.|-||.++|-.. ...+...++.++|+++||+|.+-.
T Consensus 63 ~~lNlE~a~---~~emi~ia~~---------vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFi 130 (237)
T TIGR00559 63 TPFNIEMAP---TEEMIRIAEE---------IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFI 130 (237)
T ss_pred CCEEeccCC---CHHHHHHHHH---------cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEe
Confidence 355555553 6778888876 5799999999762 234667788899999999998765
Q ss_pred CCCcHHHHHHHhHhcCCceE
Q 008152 539 TDRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 539 ~~~slgkkir~A~~~g~p~~ 558 (576)
. .-..+++.|.+.|++.+
T Consensus 131 D--P~~~qi~~A~~~GAd~V 148 (237)
T TIGR00559 131 D--ADKDQISAAAEVGADRI 148 (237)
T ss_pred C--CCHHHHHHHHHhCcCEE
Confidence 3 22668999999999865
No 120
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=73.56 E-value=6.9 Score=39.74 Aligned_cols=65 Identities=12% Similarity=0.296 Sum_probs=46.9
Q ss_pred hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHh-CCeEEEEE
Q 008152 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKL 384 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~l-G~~~~l~l 384 (576)
..+..|+++.++|.+||.+.... .-+.+|+|.|.=+.+..-.. ..+...+..+++.| |.+.++++
T Consensus 97 ~~~~~p~kif~iG~VyR~D~~D~----th~~~f~Qleg~~~~~~~~f----~~Lk~~l~~l~~~lfG~~~~~r~ 162 (247)
T PF01409_consen 97 KHRPPPIKIFEIGKVYRRDEIDA----THLPEFHQLEGLVVDKNVTF----EDLKGTLEELLKELFGIDVKVRF 162 (247)
T ss_dssp TTSHSSEEEEEEEEEESSSCSBS----SBESEEEEEEEEEEETTE-H----HHHHHHHHHHHHHHHTTTEEEEE
T ss_pred HhcCCCeEEEecCceEecCCccc----ccCccceeEeeEEEecccch----hHHHHHHHHHHHHHhhcccceEe
Confidence 34578999999999999987332 26889999888665543332 34667778888887 98755555
No 121
>PRK09350 poxB regulator PoxA; Provisional
Probab=71.83 E-value=2.9 Score=43.78 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=32.4
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRG 364 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~ 364 (576)
+++++|++||+|.++. . ..+||+|.|+|..+.+ +.+.+.+.+
T Consensus 80 rvf~i~~~FR~e~~~~--~--H~~EFt~lE~y~~~~d~~dlm~~~E~ 122 (306)
T PRK09350 80 PIFQICKSFRNEEAGR--Y--HNPEFTMLEWYRPHYDMYRLMNEVDD 122 (306)
T ss_pred ceEEecceeecCCCCC--C--CCcHHHhhhhhhhCCCHHHHHHHHHH
Confidence 9999999999998642 2 7999999999976655 555554443
No 122
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=71.10 E-value=7.6 Score=42.84 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=47.8
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEc
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~ls 385 (576)
..+|++++++|.+||++.... -....+|+|.++=+.+.+-... ++...+..+++.||+. ++++-+
T Consensus 204 ~~~PiRIFsIGRVfRrD~~~D---aTHl~eFhQlEGLVVdedVSf~----DLKgvLe~LLr~LG~~~vRFRPs 269 (533)
T TIGR00470 204 RKLPLKLFSIDRCFRREQRED---RSHLMTYHSASCVVVDEEVSVD----DGKAVAEGLLAQFGFTKFRFRPD 269 (533)
T ss_pred CCCCeEEEeeeeEEecCCCCC---CccCceeeeEEEEEECCCCCHH----HHHHHHHHHHHHhCCceEEeccC
Confidence 368999999999999996322 1379999998877766543333 3677888899999985 555544
No 123
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=70.41 E-value=20 Score=36.06 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=56.1
Q ss_pred ccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 471 RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 471 ~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~------------~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
+|+-+.++. -+.|+.+.++ +.|-||.++|-.. ...+.-.++.++|+++||+|.+-.
T Consensus 63 ~~lNlE~a~---t~em~~ia~~---------~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFi 130 (234)
T cd00003 63 TELNLEMAP---TEEMLEIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFI 130 (234)
T ss_pred CCEEeccCC---CHHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 455555553 6778887776 5899999999762 235677888899999999998765
Q ss_pred CCCcHHHHHHHhHhcCCceE
Q 008152 539 TDRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 539 ~~~slgkkir~A~~~g~p~~ 558 (576)
. .-..+++.|.+.|++.+
T Consensus 131 D--Pd~~qi~~A~~~GAd~V 148 (234)
T cd00003 131 D--PDPEQIEAAKEVGADRV 148 (234)
T ss_pred C--CCHHHHHHHHHhCcCEE
Confidence 3 22568999999999875
No 124
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=69.89 E-value=27 Score=35.27 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=50.3
Q ss_pred ccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 471 RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 471 ~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~------------~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
.|+-+.++. .+.|+.+..+ +.|-||.++|-.. ...+.-.++.++|+++||+|.+-.
T Consensus 64 ~~lNlE~a~---t~e~~~ia~~---------~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFi 131 (239)
T PF03740_consen 64 TPLNLEMAP---TEEMVDIALK---------VKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFI 131 (239)
T ss_dssp SEEEEEEES---SHHHHHHHHH---------H--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cCEEeccCC---CHHHHHHHHh---------CCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEe
Confidence 445556663 5778887776 4799999999761 345778888999999999998765
Q ss_pred CCCcHHHHHHHhHhcCCceE
Q 008152 539 TDRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 539 ~~~slgkkir~A~~~g~p~~ 558 (576)
. .--.+++.|.+.|++++
T Consensus 132 D--P~~~qi~~A~~~Gad~V 149 (239)
T PF03740_consen 132 D--PDPEQIEAAKELGADRV 149 (239)
T ss_dssp ---S-HHHHHHHHHTT-SEE
T ss_pred C--CCHHHHHHHHHcCCCEE
Confidence 3 22668999999999865
No 125
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=69.33 E-value=7 Score=40.18 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.0
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVR 363 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~ 363 (576)
++++++..||+|..+ . .+.+||+|.|++.-..+ +.+.+.+.
T Consensus 71 ~vf~i~~~fR~e~~~--~--~hl~EF~~le~e~~~~~~~dvm~~~e 112 (269)
T cd00669 71 RVFEINRNFRNEDLR--A--RHQPEFTMMDLEMAFADYEDVIELTE 112 (269)
T ss_pred cEEEEecceeCCCCC--C--CcccceeEEEEEEecCCHHHHHHHHH
Confidence 899999999999432 1 38999999999954334 55555433
No 126
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=69.27 E-value=22 Score=35.88 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=55.1
Q ss_pred cEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHhCCcEEEEeCC
Q 008152 472 PVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTT 539 (576)
Q Consensus 472 P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~------------~~~~~a~~i~~~Lr~~Gi~v~vD~~ 539 (576)
|+-+.++. -+.|+.+..+ +.|-||.++|-.. ...+.-.++.++|+++||+|.+-..
T Consensus 67 ~lNlE~a~---~~em~~ia~~---------~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid 134 (239)
T PRK05265 67 ELNLEMAA---TEEMLDIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID 134 (239)
T ss_pred CEEeccCC---CHHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 55555553 5678887776 5899999999762 2456777888999999999987652
Q ss_pred CCcHHHHHHHhHhcCCceE
Q 008152 540 DRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 540 ~~slgkkir~A~~~g~p~~ 558 (576)
.-..+++.|.+.|++.+
T Consensus 135 --P~~~qi~~A~~~GAd~V 151 (239)
T PRK05265 135 --PDPEQIEAAAEVGADRI 151 (239)
T ss_pred --CCHHHHHHHHHhCcCEE
Confidence 34568999999999865
No 127
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=66.72 E-value=6.4 Score=44.91 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=32.9
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
|++++|..||+|..+. + |-.||+|.|+|. |..-+++.+.+.+++
T Consensus 208 rvfqI~~~FR~E~~~t--~--r~pEFT~le~E~af~d~~dvm~~~E~li 252 (583)
T TIGR00459 208 RYYQIARCFRDEDLRA--D--RQPEFTQIDMEMSFMTQEDVMELIEKLV 252 (583)
T ss_pred cEEEEcceeeCCCCCC--C--CCcccCcceeeecCCCHHHHHHHHHHHH
Confidence 8999999999998663 2 679999999996 544366666544443
No 128
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=65.25 E-value=25 Score=32.93 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhCC---eEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh
Q 008152 155 WHSSAHILGQAIEQQYGC---KLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA 213 (576)
Q Consensus 155 ~hS~ahlL~~A~~~~fg~---~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI 213 (576)
-||+-||++.-+++.... -+-++| .+.-.|||.-+. +.+-+++-++.+++.|++++
T Consensus 53 iHTlEHL~A~~iRnh~~g~~~iID~SP-MGCrTGFYm~l~--G~~~~~~i~~~~~~~m~dvl 111 (161)
T COG1854 53 IHTLEHLLAGFIRNHLNGNVEIIDISP-MGCRTGFYMILI--GTPTSQDIADVLEATMKDVL 111 (161)
T ss_pred hhhHHHHHHHHHHhcccCceeEEEecC-cccccceEEEEE--CCCCHHHHHHHHHHHHHHHH
Confidence 699999999999998843 234444 444479998775 44445566778888888777
No 129
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=63.30 E-value=4.1 Score=42.61 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=35.4
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRI 375 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~ 375 (576)
=+|+++|..||+|.++. .-..||+|.|+|....+ +++.+.+. +++..++..
T Consensus 74 ~rVfeigp~FRaE~~~~----rHl~EFtmLE~e~~~~d~~d~m~~~e---~li~~i~~~ 125 (304)
T TIGR00462 74 GPIFQICKVFRNGERGR----RHNPEFTMLEWYRPGFDYHDLMDEVE---ALLQELLGD 125 (304)
T ss_pred CCEEEEcCceeCCCCCC----CcccHHHhHHHHHHcCCHHHHHHHHH---HHHHHHHHh
Confidence 48999999999998752 25889999999965544 55555433 334444444
No 130
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=63.12 E-value=9.1 Score=42.08 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=32.8
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
=+++++|..||+|.++. . .-..||+|.|+|. |..-+++.+...+++
T Consensus 200 ~rVf~i~~~FR~E~~~t--~-rHl~EFt~lE~e~a~~~~~dlm~~~e~li 246 (428)
T TIGR00458 200 ERVYEIGPIFRAEEHNT--H-RHLNEATSIDIEMAFEDHHDVMDILEELV 246 (428)
T ss_pred CcEEEEecccccCCCCC--c-cchheeeEeeeeeccCCHHHHHHHHHHHH
Confidence 38999999999998752 1 1367999999996 443366665544444
No 131
>PLN02903 aminoacyl-tRNA ligase
Probab=62.31 E-value=7.6 Score=44.80 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=33.4
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
=+++++|..||+|..+. . |-.||+|.|+|. |..-+++.+.+.+++
T Consensus 273 ~RvFqIa~~FR~E~~~t--~--RhpEFTqLE~E~sf~d~~dvm~~~E~li 318 (652)
T PLN02903 273 DRYYQIARCFRDEDLRA--D--RQPEFTQLDMELAFTPLEDMLKLNEDLI 318 (652)
T ss_pred CcEEEEehhhccCCCCC--C--cccceeeeeeeecCCCHHHHHHHHHHHH
Confidence 37999999999998763 2 669999999996 554366666544443
No 132
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=61.97 E-value=11 Score=39.80 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=33.3
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcC-c-hhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR-E-SQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~-~-~~~~~e~~~~l 366 (576)
=+++++|..||+|.+.. -.-..||+|.|+|.-.. + +++.+.+.+++
T Consensus 90 ~~vf~i~~~FR~E~~~~---~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll 137 (322)
T cd00776 90 ERVYEIGPVFRAEKSNT---RRHLSEFWMLEAEMAFIEDYNEVMDLIEELI 137 (322)
T ss_pred hhhEEeccccccCCCCc---CCCcceeeccceeeeccCCHHHHHHHHHHHH
Confidence 37999999999997421 12589999999997655 4 66666555444
No 133
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=59.82 E-value=9.6 Score=43.62 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=32.2
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
=+++++|..||+|.+.. + |--||+|.|+|. |..-+++.+.+.+++
T Consensus 210 ~rvfqi~~~FR~E~~~~--~--r~~EFt~le~e~af~~~~dvm~~~E~li 255 (588)
T PRK00476 210 DRYYQIARCFRDEDLRA--D--RQPEFTQIDIEMSFVTQEDVMALMEGLI 255 (588)
T ss_pred CceEEEeceeecCCCCC--C--cCcccccceeeecCCCHHHHHHHHHHHH
Confidence 38999999999998432 2 555999999996 554366666555444
No 134
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=59.57 E-value=16 Score=40.64 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=43.1
Q ss_pred CCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe
Q 008152 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT 379 (576)
Q Consensus 316 lpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~ 379 (576)
-|.+++.+|.+||++.-- -.-+.+|+|.|.=+.+..-.. ..++.++..+|+++|+.
T Consensus 341 ~p~k~fsigrVfR~d~iD----atH~~eFhQ~EG~vvd~~~t~----~~L~g~l~~f~~~lg~~ 396 (492)
T PLN02853 341 KPKRYFSIDRVFRNEAVD----RTHLAEFHQVEGLVCDRGLTL----GDLIGVLEDFFSRLGMT 396 (492)
T ss_pred CCcEEEeccceecCCCCC----cccCccceeEEEEEEeCCCCH----HHHHHHHHHHHHHcCCc
Confidence 589999999999999722 126899999998877654333 34778888999999883
No 135
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=59.25 E-value=14 Score=38.95 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=34.2
Q ss_pred eeeeeeccceecccc-CCCccceecccccccCeeEEcCc-hhHHHHHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFID 370 (576)
Q Consensus 318 l~l~~vg~l~R~e~~-g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~~~ 370 (576)
=+++++|..||+|.+ +. .-..||+|.|+|.-..+ +.+.+.+.+++..+.
T Consensus 94 ~~vf~i~~~FR~E~~~~~----rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~ 144 (335)
T PF00152_consen 94 ERVFEIGPCFRNEESRTR----RHLPEFTMLEWEMAFADYDDLMDLIEELIKYIF 144 (335)
T ss_dssp SEEEEEEEEE-BSSSCBT----TBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHH
T ss_pred hhhhheecceeccCcccc----cchhhhhhhhhccccCcHHHhHHHHHHHHHHHH
Confidence 389999999999986 32 14779999999995544 556666555544443
No 136
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=58.22 E-value=24 Score=28.87 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=35.2
Q ss_pred CCCHHHHHhhhccccc-----cceEEEEECCEEeeccccccCCCcEEEee
Q 008152 100 ETSPMDIAQGISKSLA-----ANALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~-----~~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
++|..|+...+...++ ...+..-||++..+.+.+|.++.+|.++-
T Consensus 26 ~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 26 STTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred CcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 5889998888765442 13456779999999999999998998864
No 137
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=57.10 E-value=12 Score=43.75 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=33.9
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
=++++++..||+|.++. . |-.||+|.|+|. |..-+++.+.+.+++
T Consensus 225 ~rvfqI~~~FR~E~~~t--~--r~pEFT~LE~E~af~d~~dvm~l~E~li 270 (706)
T PRK12820 225 ERYFQLARCFRDEDLRP--N--RQPEFTQLDIEASFIDEEFIFELIEELT 270 (706)
T ss_pred CcEEEEechhcCCCCCC--C--cCccccccceeeccCCHHHHHHHHHHHH
Confidence 38999999999998763 2 668999999995 654466666555444
No 138
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=56.83 E-value=15 Score=38.83 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=33.5
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
=+++++|..||+|.++. ....||+|.|+|.-..+ +++.+.+.+++
T Consensus 77 ~~vf~i~~~FR~E~~~~----rHl~EFt~le~e~~~~~~~~~m~~~e~li 122 (329)
T cd00775 77 ERVYEIGRNFRNEGIDL----THNPEFTMIEFYEAYADYNDMMDLTEDLF 122 (329)
T ss_pred CcEEEEeccccCCCCCC----CCCCceEEEEEeeecCCHHHHHHHHHHHH
Confidence 48999999999998763 36889999999864444 55666555444
No 139
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=53.50 E-value=16 Score=40.48 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=31.8
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
=+++++|..||+|.+.. . .-..||+|.|+|. |..-+++.+.+.+++
T Consensus 211 ~rVf~i~~~FR~E~~~t--~-rHl~EFt~le~e~~~~~~~dvm~~~E~lv 257 (453)
T TIGR00457 211 SKVYTFGPTFRAEKSNT--S-RHLSEFWMIEPEMAFANLNDLLQLAETLI 257 (453)
T ss_pred cCceEeeeccccCCCCC--C-cCcchhccceeeeecCCHHHHHHHHHHHH
Confidence 37999999999998752 1 1367999999995 553355555444333
No 140
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=51.74 E-value=20 Score=40.10 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=32.9
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
=+++++|..||+|..+. ....||+|.|+|.-..+ +++.+.+.+++
T Consensus 241 ~rVfei~~~FR~E~~~~----rH~pEFt~lE~e~a~~d~~d~m~~~E~li 286 (491)
T PRK00484 241 ERVYEIGRNFRNEGIDT----RHNPEFTMLEFYQAYADYNDMMDLTEELI 286 (491)
T ss_pred CcEEEEecceecCCCCC----CcCCceEEEEEEEecCCHHHHHHHHHHHH
Confidence 38999999999998753 37889999999863334 55555544433
No 141
>PRK06462 asparagine synthetase A; Reviewed
Probab=51.28 E-value=19 Score=38.18 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=33.7
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
=+++++|..||+|.++.- +-.-..||+|.|+|.-..+ +++.+.+.+++
T Consensus 103 ~rVfeI~p~FR~E~~~~~-~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv 151 (335)
T PRK06462 103 GKIFYLSPNFRLEPVDKD-TGRHLYEFTQLDIEIEGADLDEVMDLIEDLI 151 (335)
T ss_pred CcEEEEeccccCCCCCCC-CCCCCCchheeeehhhcCCHHHHHHHHHHHH
Confidence 389999999999986531 0125889999999964444 66666555444
No 142
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=50.99 E-value=71 Score=26.28 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=32.5
Q ss_pred CCCHHHHHhhhccccc-------cceEEEEECCEEeeccccccCCCcEEEee
Q 008152 100 ETSPMDIAQGISKSLA-------ANALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~-------~~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
++|+.++...+...+. ...+..-||+++.+++.+|.++.+|.|+-
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeC
Confidence 5788888777654321 23345668999999999999988888763
No 143
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=50.10 E-value=22 Score=39.23 Aligned_cols=46 Identities=17% Similarity=0.378 Sum_probs=33.1
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcC-chhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCR-ESQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~-~~~~~~e~~~~l 366 (576)
=+++++|..||+|.++. . .-..||+|.|+|. |.. -+++.+.+.+++
T Consensus 203 ~rVf~i~~~FR~E~~~t--~-rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv 250 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNT--S-RHLNEYTSIDVEMGFIDDHEDVMDLLENLL 250 (437)
T ss_pred CcEEEEeceeeCCCCCC--c-ccchhhheeeeeeeecccHHHHHHHHHHHH
Confidence 37999999999998762 1 1367999999995 654 366666555444
No 144
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=49.85 E-value=32 Score=36.60 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=42.6
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHh-CCeEEEEE
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKL 384 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~l-G~~~~l~l 384 (576)
.+.|+++..+|.+||.+.... ....+|+|.++=+.+..-.. ..+...+..+++.+ |-..++++
T Consensus 182 ~~~Pirif~~G~VyR~D~~Da----tH~~~FhQleglvvd~~vtf----~dLK~~L~~fl~~~fg~~~~~R~ 245 (339)
T PRK00488 182 QKPPIRIIAPGRVYRNDSDDA----THSPMFHQVEGLVVDKNISF----ADLKGTLEDFLKAFFGEDVKIRF 245 (339)
T ss_pred cCCCeEEEEeeeEEEcCCCCc----ccCcceeeEEEEEEeCCCCH----HHHHHHHHHHHHHHcCCCCeEEe
Confidence 578999999999999986221 27899999887776654322 33555666666665 63344444
No 145
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=49.43 E-value=16 Score=40.28 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=40.0
Q ss_pred eeEeccccCChhhhhhhhh--cCCeeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHH
Q 008152 296 QRVYGISYPDKKRLKHAFA--ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVR 363 (576)
Q Consensus 296 qRiyg~~fp~~~~L~~s~r--elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~ 363 (576)
-.+| +.|++++.+.-.- .--=+.+|++.+||.|... .+ |--||+|.|+|. |...+.+..-+.
T Consensus 226 g~FY--aLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR--~D--RQPEFTQvD~EMsF~~~~dim~liE 290 (628)
T KOG2411|consen 226 GKFY--ALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLR--AD--RQPEFTQVDMEMSFTDQEDIMKLIE 290 (628)
T ss_pred Ccee--ecCCCHHHHHHHHHHhchhhHHhHHhhhcccccC--cc--cCCcceeeeeEEeccCHHHHHHHHH
Confidence 3455 6777776544211 1112678999999999743 23 899999999997 555455554333
No 146
>PLN02850 aspartate-tRNA ligase
Probab=48.26 E-value=17 Score=41.02 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=32.3
Q ss_pred eeeeeccceecccc-CCCccceecccccccCee-EEcCc-hhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEAS-GALTGLTRVRRFQQDDAH-IFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~-g~l~gLiRvreF~q~da~-iF~~~-~~~~~e~~~~l 366 (576)
+++++|..||+|.+ +. .-+.||+|.|+| .|..+ +.+.+.+.+++
T Consensus 293 rVfeIgp~FRaE~s~t~----RHl~EFt~Le~Em~~~~~y~evm~~~E~ll 339 (530)
T PLN02850 293 RVFEIGPVFRAEDSFTH----RHLCEFTGLDLEMEIKEHYSEVLDVVDELF 339 (530)
T ss_pred ceEEEecccccCCCCCC----ccchhhccchhhhhhhcCHHHHHHHHHHHH
Confidence 89999999999985 32 137899999999 67765 55555544443
No 147
>PLN03194 putative disease resistance protein; Provisional
Probab=48.22 E-value=74 Score=30.97 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=37.6
Q ss_pred CCCceEEEEeCCCCh-HHHHHHHHHHHHhCCcEEEEeCC----CCcHHHHHHHhHh
Q 008152 502 LSPRQAIVCPVSEKS-QPYALQVRDHIYRAGYYVDVDTT----DRKIQKKVTTSNF 552 (576)
Q Consensus 502 laP~qV~Vipv~~~~-~~~a~~i~~~Lr~~Gi~v~vD~~----~~slgkkir~A~~ 552 (576)
-.++||.|---+++. ...+.-|++.|+.+||+|.+|+. +..+...+..|-.
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIe 79 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIR 79 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHH
Confidence 356889887766554 46789999999999999999984 4555555555533
No 148
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=47.60 E-value=32 Score=28.33 Aligned_cols=47 Identities=21% Similarity=0.078 Sum_probs=38.2
Q ss_pred eecCCCCHHHHHhhhccccccceEEEEECC-EEeeccccccCCCcEEEe
Q 008152 96 GKRWETSPMDIAQGISKSLAANALISMVNG-VLWDMTRPLEADCDLKLF 143 (576)
Q Consensus 96 ~~~~~ttp~dia~~i~~~~~~~~v~a~Vng-~l~dL~~~l~~d~~ve~l 143 (576)
..+ |+|..|+|..|.....+...-|.|-| +...+++.|++..-|+++
T Consensus 28 l~~-g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~ 75 (76)
T cd04938 28 VKK-GTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFK 75 (76)
T ss_pred EcC-CCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEE
Confidence 344 89999999999988888888888877 778888888776667665
No 149
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=46.18 E-value=25 Score=40.70 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=33.1
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGV 365 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~ 365 (576)
=++|++|..||+|..+. ...-||+|.|+|.-..+ +.+.+...++
T Consensus 302 erVyeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~l 346 (659)
T PTZ00385 302 ERIYEIGKVFRNEDADR----SHNPEFTSCEFYAAYHTYEDLMPMTEDI 346 (659)
T ss_pred CCEEEEeceecCCCCCC----CccccccceeeeeecCCHHHHHHHHHHH
Confidence 37999999999998763 26889999999976555 5555544443
No 150
>PLN02221 asparaginyl-tRNA synthetase
Probab=45.32 E-value=32 Score=39.32 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=29.0
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKD 360 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~ 360 (576)
=++|++|+.||+|.+..- .=+.||+|.|+|. |+.-+++.+
T Consensus 327 ~rVfeIgP~FRAE~s~T~---RHL~EFtmlE~Emaf~d~~dvm~ 367 (572)
T PLN02221 327 SSVYTFGPTFRAENSHTS---RHLAEFWMVEPEIAFADLEDDMN 367 (572)
T ss_pred CCeEEEccceecCCCCCC---cccccccceeeeeecCCHHHHHH
Confidence 389999999999986321 1488999999995 553344443
No 151
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=45.29 E-value=26 Score=40.07 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=29.3
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDE 361 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e 361 (576)
=+++++|..||.|.+.. . .-+.||+|.|+|. |..-+++.+-
T Consensus 344 ~rVf~i~p~FRaE~s~t--~-RHL~EFt~lE~E~af~d~~d~m~~ 385 (586)
T PTZ00425 344 GDVYTFGPTFRAENSHT--S-RHLAEFWMIEPEIAFADLYDNMEL 385 (586)
T ss_pred CCEEEEeceEeCCCCCC--C-CCCcccceEEEEEecCCHHHHHHH
Confidence 37999999999998631 1 1468999999996 5533554443
No 152
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=44.31 E-value=1.6e+02 Score=27.81 Aligned_cols=79 Identities=6% Similarity=0.123 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCCC---C------hHHHHHHHHHHHHhCCcEEEEeCCCC-----cHHHHHHH
Q 008152 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE---K------SQPYALQVRDHIYRAGYYVDVDTTDR-----KIQKKVTT 549 (576)
Q Consensus 484 ERlia~L~E~~~g~~P~~laP~qV~Vipv~~---~------~~~~a~~i~~~Lr~~Gi~v~vD~~~~-----slgkkir~ 549 (576)
+..+..+.+.|..+++.. .+..+..+|-.. . ...++..+.+.+....+-|.+|.++. .+..++.+
T Consensus 13 ~~~~~~~i~~Y~kRl~~~-~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~ 91 (157)
T PRK00103 13 PKWLKDGIAEYLKRFPRY-LKLELIEIPDEKRPKNADAEQIKAKEGERILAALPKGARVIALDERGKQLSSEEFAQELER 91 (157)
T ss_pred cHHHHHHHHHHHHhcCcc-CCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHH
Confidence 345556666666566543 566666666332 1 23456666667766678899998764 36788999
Q ss_pred hHhcCC-ceEEEecc
Q 008152 550 SNFEIK-NPHYFYCP 563 (576)
Q Consensus 550 A~~~g~-p~~iIiGp 563 (576)
....|. ..+++||.
T Consensus 92 ~~~~g~~~i~F~IGG 106 (157)
T PRK00103 92 WRDDGRSDVAFVIGG 106 (157)
T ss_pred HHhcCCccEEEEEcC
Confidence 888886 78888884
No 153
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=43.10 E-value=29 Score=39.04 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=33.7
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
=+++++|..||+|..+. ....||+|.|+|.-..+ +++.+.+.+++
T Consensus 253 ~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 253 ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred CcEEEEehhccCCCCCC----CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 37999999999998642 36889999999975545 66666555444
No 154
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=41.84 E-value=29 Score=39.78 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
+++++|..||+|..+. .-.-||+|.|+|.-..+ +++.+...+++
T Consensus 323 rVfeIgp~FRnE~~~~----rHnpEFTmlE~y~ay~dy~dlM~l~E~Li 367 (585)
T PTZ00417 323 KVYEIGKVFRNEGIDN----THNPEFTSCEFYWAYADFYDLIKWSEDFF 367 (585)
T ss_pred CEEEEcccccCCCCCC----CccceeeeeeeeeecCCHHHHHHHHHHHH
Confidence 8999999999998763 35789999999964444 56555444433
No 155
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=41.69 E-value=1.2e+02 Score=31.59 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=44.5
Q ss_pred eEEEeCCCcEEEe-ecCCCCHHHHHhhhcccc-------------ccceEEEEECCEE---eeccccccCCCcEEEeecC
Q 008152 84 IKITLPDGSVKEG-KRWETSPMDIAQGISKSL-------------AANALISMVNGVL---WDMTRPLEADCDLKLFTFD 146 (576)
Q Consensus 84 I~v~l~dg~~~~~-~~~~ttp~dia~~i~~~~-------------~~~~v~a~Vng~l---~dL~~~l~~d~~ve~l~~~ 146 (576)
++|++ ||+.+++ ++ |+|++|.|+...... +=++.++.|+|.- -.-..|+.+.-.|+ .+
T Consensus 69 ~~I~I-DGk~VeV~~~-G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~---T~ 143 (297)
T PTZ00305 69 AIMFV-NKRPVEIIPQ-EENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII---TD 143 (297)
T ss_pred eEEEE-CCEEEEecCC-CChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE---eC
Confidence 55666 8999998 67 999999998865321 1145667787752 24455555544333 35
Q ss_pred ChhhhHHHHHHHHHHH
Q 008152 147 SDEGRDTFWHSSAHIL 162 (576)
Q Consensus 147 ~~eG~~vy~hS~ahlL 162 (576)
++.-++.-+..+.+||
T Consensus 144 Se~v~~~Rk~vLElLL 159 (297)
T PTZ00305 144 SRLVRDAREGNVELIL 159 (297)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5554444444444444
No 156
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=40.96 E-value=38 Score=37.51 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=31.7
Q ss_pred eeeeeeccceecccc-CCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~-g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
=++++++..||+|.+ +. .-..||+|.|+|. |..-+++.+.+.+++
T Consensus 208 ~rVf~i~~~FR~E~~~t~----rHl~EFt~lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 208 GKVYTFGPTFRAENSNTR----RHLAEFWMIEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred CCeEEeeeccccCCCCCc----cccccccccceEEeccCHHHHHHHHHHHH
Confidence 379999999999985 32 1368999999996 443355555544444
No 157
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=40.41 E-value=28 Score=39.08 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=32.6
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
+++++|..||+|..+. ....||+|.|+|.-..+ +++.+...+++
T Consensus 242 rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~dlm~~~E~li 286 (496)
T TIGR00499 242 KVYEIGRNFRNEGVDT----THNPEFTMIEFYQAYADYEDLMDLTENLF 286 (496)
T ss_pred ceEEEecceecCCCCC----cccchhheeehhhhcCCHHHHHHHHHHHH
Confidence 7999999999998653 36889999999864444 55555544444
No 158
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=40.28 E-value=73 Score=31.80 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=43.0
Q ss_pred CCCceEEEEeCCC------------ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEE
Q 008152 502 LSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYF 560 (576)
Q Consensus 502 laP~qV~Vipv~~------------~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iI 560 (576)
..|-||.++|=.. ...+.-.++.++|++.|++|.+-.. .-..+|..|...|++++=+
T Consensus 83 ~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~~IEL 151 (243)
T COG0854 83 TKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAPRIEL 151 (243)
T ss_pred cCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCCEEEE
Confidence 3789999999652 1235567778999999999987653 3345799999999988743
No 159
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=39.41 E-value=28 Score=39.56 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=33.3
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeE-EcCc-hhHHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRE-SQIKDEVRGVLE 367 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~-~~~~~e~~~~l~ 367 (576)
+++++|..||+|.++.- .-..||+|.|+|. |+.+ +++.+.+.+++.
T Consensus 281 rVfeI~p~FRaE~s~T~---RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 281 RVFEVGPVFRSENSNTH---RHLTEFVGLDVEMRINEHYYEVLDLAESLFN 328 (550)
T ss_pred CEEEEeCeEeCCCCCCC---CCccchhhhhhhhHhcCCHHHHHHHHHHHHH
Confidence 79999999999987621 1367999999974 7655 566665554443
No 160
>PLN02502 lysyl-tRNA synthetase
Probab=39.12 E-value=28 Score=39.56 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=33.0
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~~~l 366 (576)
=+++++|..||+|..+. ....||+|.|+|. |..-+++.+...+++
T Consensus 298 ~rVfeIg~~FRnE~~~~----rH~pEFtmlE~y~a~~d~~dlm~~~E~li 343 (553)
T PLN02502 298 ERVYEIGRQFRNEGIST----RHNPEFTTCEFYQAYADYNDMMELTEEMV 343 (553)
T ss_pred CCEEEEcCeeeCCCCCC----ccccceeehhhhhhcCCHHHHHHHHHHHH
Confidence 38999999999998653 4688999999985 543266665544443
No 161
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=38.99 E-value=1.1e+02 Score=28.93 Aligned_cols=55 Identities=15% Similarity=0.305 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhC--Ce-EEecCccccCCceEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 008152 155 WHSSAHILGQAIEQQYG--CK-LCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (576)
Q Consensus 155 ~hS~ahlL~~A~~~~fg--~~-l~ig~si~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~iI 213 (576)
-||+-|+++.-+++... .+ +-+|| .+.-.|||.-+. + ..+.+| ++.+++.++.+.
T Consensus 53 lHTlEHL~At~lRn~~~~~~~iI~~sP-MGCrTGFYli~~--g-~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 53 IHTLEHLLAGFLRNHLDGGVEIIDISP-MGCRTGFYLILI--G-TPDEEDVADALKATLEDVL 111 (158)
T ss_pred hhHHHHHHHHHHhhCccCCceEEEECC-CccccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 69999999999999763 33 44555 554479997664 2 255555 556666666553
No 162
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=37.97 E-value=1.4e+02 Score=28.32 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhCC----eEEecCccccCCceEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 008152 153 TFWHSSAHILGQAIEQQYGC----KLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (576)
Q Consensus 153 vy~hS~ahlL~~A~~~~fg~----~l~ig~si~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~iI 213 (576)
.=-||+-|+++.-+++.... -+-+|| .+.-.|||.-+. + ..+.++ ++.+++.++.++
T Consensus 50 ~~lHTlEHL~A~~lRn~~~~~~~~iI~~gP-MGCrTGFYli~~--g-~~~~~~i~~l~~~~l~~i~ 111 (157)
T PF02664_consen 50 AALHTLEHLFATYLRNHLDGDKDKIIDFGP-MGCRTGFYLILW--G-DPSSEDIADLLKETLEFIL 111 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTEEEEEEEE--TTSSEEEEEEE--S-S--HHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCccCCCCeEEEecC-cccccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 34799999999999998842 345555 544479997664 2 355555 577777777766
No 163
>PLN02532 asparagine-tRNA synthetase
Probab=37.86 E-value=42 Score=38.72 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=30.4
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVR 363 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~ 363 (576)
=++|++|..||+|.+..- .-+.||+|.|+|. |..-+++.+-..
T Consensus 390 ~rVYeIgP~FRAE~s~T~---RHL~EFtmlE~Emaf~d~~dvM~l~E 433 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSA---RHLAEMWMVEVEMAFSELEDAMNCAE 433 (633)
T ss_pred CceEEEccceecCCCCCC---cccccccceeeeehhcCHHHHHHHHH
Confidence 389999999999986421 1489999999996 553255544333
No 164
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=37.58 E-value=58 Score=27.00 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred CCCHHHHHhhhcccccc-------------ceEEEEECCEEeeccc--cccCCCcEEEee
Q 008152 100 ETSPMDIAQGISKSLAA-------------NALISMVNGVLWDMTR--PLEADCDLKLFT 144 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~~-------------~~v~a~Vng~l~dL~~--~l~~d~~ve~l~ 144 (576)
++|+.|+.+.+...++. +.+...|||+..+-.. +|.++.+|.++-
T Consensus 24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 68999998888654431 2366779999876555 999888888764
No 165
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=35.27 E-value=1.2e+02 Score=28.29 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCC---CcHHHHHHHhHhcCCceEEEe
Q 008152 517 QPYALQVRDHIYRAGYYVDVDTTD---RKIQKKVTTSNFEIKNPHYFY 561 (576)
Q Consensus 517 ~~~a~~i~~~Lr~~Gi~v~vD~~~---~slgkkir~A~~~g~p~~iIi 561 (576)
.+.|..+.+.|++.|+.|.+.-.+ -++..|.+.|+..++-+.|-|
T Consensus 27 l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isi 74 (175)
T PF01520_consen 27 LDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISI 74 (175)
T ss_dssp HHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEE
Confidence 456888889999999999987643 379999999999998877765
No 166
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=35.07 E-value=50 Score=36.31 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.3
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~ 355 (576)
+++++|+.||.|.+..-. -+.||+|.|+|.=..+
T Consensus 201 rVf~igP~FRAE~s~T~R---HL~EF~~ld~Emaf~~ 234 (435)
T COG0017 201 RVFTIGPTFRAEKSNTRR---HLSEFWMLDPEMAFAD 234 (435)
T ss_pred ceEEecCceecCCCCCcc---hhhhHheecceeccCc
Confidence 899999999999976411 2889999999994433
No 167
>PLN02603 asparaginyl-tRNA synthetase
Probab=33.10 E-value=57 Score=37.25 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=28.8
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKD 360 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~ 360 (576)
+++++|..||+|.+..- .-+.||+|.|+|. |..-+++.+
T Consensus 323 rVy~igp~FRaE~s~T~---RHL~EF~mlE~E~af~dl~d~m~ 362 (565)
T PLN02603 323 DVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLNDDMA 362 (565)
T ss_pred ceEEEecceeCCCCCCc---cccccceeeeeeeecCCHHHHHH
Confidence 79999999999987421 1478999999997 653344444
No 168
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=32.63 E-value=87 Score=26.16 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=36.7
Q ss_pred CCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEee
Q 008152 100 ETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
++|+.|+...++-.+ ..+-+..|||+..++++.+.....|.+.-
T Consensus 32 ~~tvkd~IEsLGVP~-tEV~~i~vNG~~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 32 GATVKDVIESLGVPH-TEVGLILVNGRPVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred CCcHHHHHHHcCCCh-HHeEEEEECCEECCCcccCCCCCEEEEEe
Confidence 889999999987654 35777789999999999999887887654
No 169
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.70 E-value=2e+02 Score=26.81 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=34.5
Q ss_pred CceEEEEeCC-CChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCC
Q 008152 504 PRQAIVCPVS-EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIK 555 (576)
Q Consensus 504 P~qV~Vipv~-~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~ 555 (576)
..+|.|.+++ +.+.--+.-+++.|++.||.|...---.|...-.+.|-...+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv 64 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDV 64 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCC
Confidence 4567777777 455556777778888888888776555566666666644444
No 170
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.25 E-value=2.8e+02 Score=27.87 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEe
Q 008152 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFY 561 (576)
Q Consensus 482 giERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIi 561 (576)
|+++++..+.+. | .+-.++| +...+...++.+.+++.|+...+=....|..++++........|+.++
T Consensus 92 G~~~fi~~~~~a--G--------~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~ 159 (242)
T cd04724 92 GLERFLRDAKEA--G--------VDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYV 159 (242)
T ss_pred CHHHHHHHHHHC--C--------CcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEE
Confidence 689999888874 2 1233443 222346678888999999988877777787888888887666666554
Q ss_pred c
Q 008152 562 C 562 (576)
Q Consensus 562 G 562 (576)
+
T Consensus 160 s 160 (242)
T cd04724 160 S 160 (242)
T ss_pred e
Confidence 3
No 171
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=30.29 E-value=45 Score=31.38 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC---------hHHHHHHHHHHHHhCCcEEEEeCCCCc-----HHHHHHH
Q 008152 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSEK---------SQPYALQVRDHIYRAGYYVDVDTTDRK-----IQKKVTT 549 (576)
Q Consensus 484 ERlia~L~E~~~g~~P~~laP~qV~Vipv~~~---------~~~~a~~i~~~Lr~~Gi~v~vD~~~~s-----lgkkir~ 549 (576)
+..+..+.+.|..+++.. .+.++.-+|-... ....+..|.+.+....+.|.+|.++.. +.+++.+
T Consensus 13 ~~~~~~~~~eY~kRl~~~-~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~ 91 (155)
T PF02590_consen 13 EKFLKELIEEYLKRLSRY-AKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQLSSEEFAKKLER 91 (155)
T ss_dssp SHHHHHHHHHHHHHHCTT-SEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCcc-CceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccCChHHHHHHHHH
Confidence 446666777676555554 4556666664430 123344555555667888999987643 6779999
Q ss_pred hHhcCC-ceEEEec
Q 008152 550 SNFEIK-NPHYFYC 562 (576)
Q Consensus 550 A~~~g~-p~~iIiG 562 (576)
....|. ..+++||
T Consensus 92 ~~~~g~~~i~F~IG 105 (155)
T PF02590_consen 92 WMNQGKSDIVFIIG 105 (155)
T ss_dssp HHHTTS-EEEEEE-
T ss_pred HHhcCCceEEEEEe
Confidence 999998 8899888
No 172
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=29.01 E-value=49 Score=40.83 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=33.3
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
+++++|..||+|..+. .-..||+|.|+|.-..+ +++.+...+++
T Consensus 840 rVFEIg~~FRnE~~~~----rHnpEFTmLE~y~a~~dy~d~m~l~E~li 884 (1094)
T PRK02983 840 RVFELGRNFRNEGVDA----THNPEFTLLEAYQAHADYDTMRDLTRELI 884 (1094)
T ss_pred ceEEEcceecCCCCCC----CccccccchhhhhhcCCHHHHHHHHHHHH
Confidence 7999999999998753 36889999999986555 55555544443
No 173
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=28.98 E-value=53 Score=27.24 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=23.1
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhcc
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISK 112 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~ 112 (576)
++|+|++ ||+.+++.+ |.|+.+.+.....
T Consensus 2 ~~v~i~i-dG~~v~~~~-G~til~al~~~gi 30 (82)
T PF13510_consen 2 KMVTITI-DGKPVEVPP-GETILEALLAAGI 30 (82)
T ss_dssp EEEEEEE-TTEEEEEEE-T-BHHHHHHHTT-
T ss_pred CEEEEEE-CCEEEEEcC-CCHHHHHHHHCCC
Confidence 3688998 899999998 9999999987653
No 174
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.13 E-value=4.3e+02 Score=26.83 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEe
Q 008152 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFY 561 (576)
Q Consensus 482 giERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIi 561 (576)
|+||++..+.+. | .+-.++| +.-.+.+.++.+.+++.|+....=....|.-++++.-....--|+.++
T Consensus 103 G~e~f~~~~~~a--G--------vdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~v 170 (256)
T TIGR00262 103 GVEEFYAKCKEV--G--------VDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLV 170 (256)
T ss_pred hHHHHHHHHHHc--C--------CCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEE
Confidence 699999888874 2 2344555 222356777888888888876544444555556655444444466555
Q ss_pred c
Q 008152 562 C 562 (576)
Q Consensus 562 G 562 (576)
+
T Consensus 171 s 171 (256)
T TIGR00262 171 S 171 (256)
T ss_pred E
Confidence 4
No 175
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=26.96 E-value=67 Score=32.34 Aligned_cols=52 Identities=33% Similarity=0.563 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHhcCCCCC--------CCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 482 SVERMFAILLEHYKGKWP--------FWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 482 giERlia~L~E~~~g~~P--------~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
+.+|++.+-.. |.+| .|-+|..=+|+|+++- ...+.+.+.+|+..+++.+|.
T Consensus 31 s~~~Ll~AY~~---GiFPw~~~~~pi~WwsP~pR~Vl~~~~~--hisrsl~k~lr~~~f~itin~ 90 (233)
T PRK00301 31 SPERLLAAYAQ---GIFPWFSDGQPILWWSPDPRAVLPPDEF--HISRSLRKTLRKSPFRVTVDT 90 (233)
T ss_pred CHHHHHHHHhc---CcccCCCCCCCceEEcCCCCEEeccccc--ccCHHHHHHHcCCCeEEEEcc
Confidence 79999877653 6655 3779988899998763 356788899998899999985
No 176
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=25.73 E-value=1.1e+02 Score=31.86 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=38.5
Q ss_pred CCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe
Q 008152 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT 379 (576)
Q Consensus 316 lpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~ 379 (576)
.|++++++|.+||.+.... ....||+|.++-+.+..-. +..+...+..+++.+|++
T Consensus 149 ~pirlFEiGrVfr~d~~d~----~~~pef~ql~gl~~~~~~~----f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTVDA----THLPEFHQVEGLVIDKNVS----FTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred CCceEEEecceEEcCCCCC----ccCChhhEEEEEEECCCCC----HHHHHHHHHHHHHHhCCC
Confidence 7899999999999875221 1345888877665442211 345667778888888876
No 177
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=25.20 E-value=1.1e+02 Score=32.61 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=43.1
Q ss_pred CeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhC-CeEEEEE
Q 008152 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFG-FTYELKL 384 (576)
Q Consensus 317 pl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG-~~~~l~l 384 (576)
|+++..+|.+||++..-. +-.-+|+|.|.=+.+..-. +..+..++..+++.|+ .+.+++.
T Consensus 192 P~k~~~~grvyR~D~~Da----THs~~FhQiEGlvvd~~~s----~~~Lkg~L~~f~~~~fg~~~~vRf 252 (335)
T COG0016 192 PIKIFSPGRVYRNDTVDA----THSPEFHQIEGLVVDKNIS----FADLKGTLEEFAKKFFGEDVKVRF 252 (335)
T ss_pred CceEecccceecCCCCCc----ccchheeeeEEEEEeCCcc----HHHHHHHHHHHHHHhcCCCcceEe
Confidence 999999999999995432 3688999998855554322 3447778888888876 4444444
No 178
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.92 E-value=4e+02 Score=24.17 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=34.8
Q ss_pred eEEEEeCC-CChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEE
Q 008152 506 QAIVCPVS-EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYF 560 (576)
Q Consensus 506 qV~Vipv~-~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iI 560 (576)
.|.+.-++ +.+..-+.=++..|+++||.|..--.+.+...-++.|.+.++..+.+
T Consensus 4 ~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 4 RILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred EEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34444444 34444555666777778887766555667777777777777765554
No 179
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.41 E-value=4.1e+02 Score=27.18 Aligned_cols=69 Identities=4% Similarity=0.028 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEe
Q 008152 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFY 561 (576)
Q Consensus 482 giERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIi 561 (576)
|+||++.-+.+. | .+-.++| +.-.+.+.++.+.+++.|+....=....|..++++.-....-.|+..+
T Consensus 107 G~e~F~~~~~~a--G--------vdgviip--DLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 107 GINKFIKKISQA--G--------VKGLIIP--DLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred CHHHHHHHHHHc--C--------CeEEEec--CCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 799999888873 2 2234444 122355778888999999988777777788888888777666677776
Q ss_pred c
Q 008152 562 C 562 (576)
Q Consensus 562 G 562 (576)
+
T Consensus 175 S 175 (263)
T CHL00200 175 S 175 (263)
T ss_pred c
Confidence 5
No 180
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=24.14 E-value=46 Score=35.98 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=37.0
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCc-hhHHHHHHH-HHHHHHHHHHHhCCeE
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRE-SQIKDEVRG-VLEFIDYAYRIFGFTY 380 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~-~~~~~e~~~-~l~~~~~i~~~lG~~~ 380 (576)
-+++.+|..||.|.+..-. -+.||+|.++++ |+.+ +.+..-... +-.++..+++.++=+.
T Consensus 206 srvyTfgP~FRAEnS~tsR---HLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edm 268 (446)
T KOG0554|consen 206 SRVYTFGPTFRAENSHTSR---HLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDM 268 (446)
T ss_pred cceEeeccceecccCCchh---HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 4789999999999865312 488999999998 6653 222211111 2244555566554443
No 181
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=24.07 E-value=2.5e+02 Score=26.07 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHhCCcEEEEeCCC---CcHHHHHHHhHhcCCceEEEe
Q 008152 516 SQPYALQVRDHIYRAGYYVDVDTTD---RKIQKKVTTSNFEIKNPHYFY 561 (576)
Q Consensus 516 ~~~~a~~i~~~Lr~~Gi~v~vD~~~---~slgkkir~A~~~g~p~~iIi 561 (576)
..+.|..+.+.|++.|++|.+.-.+ .++..+.+.|+..++-+.|-+
T Consensus 27 ~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~isl 75 (172)
T cd02696 27 NLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISI 75 (172)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEE
Confidence 3567888999999999999877543 589999999999888766654
No 182
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=23.77 E-value=3.4e+02 Score=27.03 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=36.9
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhcccccc-------------ceEEEEECCEE---eeccccccCCC
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAA-------------NALISMVNGVL---WDMTRPLEADC 138 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~-------------~~v~a~Vng~l---~dL~~~l~~d~ 138 (576)
..|+|++ ||+.+..++ |.|+++.|...+...+. ..-.++|||.. ..-..|+.++-
T Consensus 2 ~~v~i~i-dg~~~~~~~-g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm 72 (234)
T PRK07569 2 SVKTLTI-DDQLVSARE-GETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGM 72 (234)
T ss_pred ceEEEEE-CCEEEEeCC-CCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCC
Confidence 4588888 888999888 99999999875532211 33567788842 24455565543
No 183
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.38 E-value=2.8e+02 Score=20.72 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHhcCC-----CCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEE
Q 008152 480 LGSVERMFAILLEHYKG-----KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYV 534 (576)
Q Consensus 480 ~GgiERlia~L~E~~~g-----~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v 534 (576)
.|.+.+++.+|.++... .++..-.-.....+.+.. ...+.+.|+++|+.+
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-----IEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-----HHHHHHHHHHCCceE
Confidence 36799999888886432 223211112233444433 567888999999876
No 184
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=22.60 E-value=2.9e+02 Score=32.97 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=47.5
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccc---ccc----------ceEEEEECCEEe---eccccccCCCcEEEeec
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKS---LAA----------NALISMVNGVLW---DMTRPLEADCDLKLFTF 145 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~---~~~----------~~v~a~Vng~l~---dL~~~l~~d~~ve~l~~ 145 (576)
++|+|++ ||+.++.++ |+|++|.|+..... +.+ ...++.|+|... .-..|+.++-.|+-- .
T Consensus 3 ~~v~~~i-dg~~~~~~~-g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t~-~ 79 (797)
T PRK07860 3 DLVTLTI-DGVEVSVPK-GTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKTQ-L 79 (797)
T ss_pred ceEEEEE-CCEEEEeCC-CChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEeC-C
Confidence 5688988 899999999 99999999876532 211 345667787522 344555544333221 2
Q ss_pred CChhhhHHHHHHHHHHHH
Q 008152 146 DSDEGRDTFWHSSAHILG 163 (576)
Q Consensus 146 ~~~eG~~vy~hS~ahlL~ 163 (576)
+++.-++.-+.-+.+||.
T Consensus 80 ~s~~v~~~r~~~le~ll~ 97 (797)
T PRK07860 80 TSPVADKAQHGVMELLLI 97 (797)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 355444444445555544
No 185
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=22.37 E-value=62 Score=33.59 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=34.6
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEF 368 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~ 368 (576)
-.++|+|.+|||+..|++. --||+|-+=|--+-+ .-+.+|+..++++
T Consensus 90 ~~ifql~kvfRN~E~G~~H----~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~ 137 (322)
T COG2269 90 GPIFQLGKVFRNEEMGRLH----NPEFTMLEWYRVGCDYYRLMNEVDDLLQL 137 (322)
T ss_pred CcchhhhHHHhcccccccC----CCceeEeeeeccCCcHHHHHHHHHHHHHH
Confidence 3689999999999988633 349999988877666 5566665544443
No 186
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=22.25 E-value=1.5e+02 Score=25.61 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhCCcEEEE
Q 008152 518 PYALQVRDHIYRAGYYVDV 536 (576)
Q Consensus 518 ~~a~~i~~~Lr~~Gi~v~v 536 (576)
+|..++.+.|++.|+...+
T Consensus 19 ~yVa~~i~~l~~sGl~y~~ 37 (97)
T TIGR00106 19 SYVAAAIEVLKESGLKYEL 37 (97)
T ss_pred HHHHHHHHHHHHcCCCeEe
Confidence 3333333444444443333
No 187
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=22.02 E-value=2.1e+02 Score=25.98 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=26.5
Q ss_pred eEEEEeCC--CChHHHHHHHHHHHHhC-CcEEEEeCC
Q 008152 506 QAIVCPVS--EKSQPYALQVRDHIYRA-GYYVDVDTT 539 (576)
Q Consensus 506 qV~Vipv~--~~~~~~a~~i~~~Lr~~-Gi~v~vD~~ 539 (576)
.|.|+.-. +++.+...++++.|++. |+.|.+|.-
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~ 38 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQW 38 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHH
Confidence 35566543 45678899999999999 999999963
No 188
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=22.01 E-value=2.6e+02 Score=32.75 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=48.1
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHhhhcccc---c----------cceEEEEECCE---Ee-eccccccCCCcEEEeec
Q 008152 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSL---A----------ANALISMVNGV---LW-DMTRPLEADCDLKLFTF 145 (576)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~---~----------~~~v~a~Vng~---l~-dL~~~l~~d~~ve~l~~ 145 (576)
+|+|++ ||+.++.++ |+|++|.|+..+... . =+..++.|+|. +. .-..|+.+.-. |..
T Consensus 1 m~~~~I-dg~~v~v~~-g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~---v~T 75 (687)
T PRK09130 1 MVKLKV-DGKEIEVPD-GYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMV---IFT 75 (687)
T ss_pred CeEEEE-CCEEEEeCC-CCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCE---EEe
Confidence 377888 899999999 999999998865422 1 13456677664 22 34444444332 334
Q ss_pred CChhhhHHHHHHHHHHHHH
Q 008152 146 DSDEGRDTFWHSSAHILGQ 164 (576)
Q Consensus 146 ~~~eG~~vy~hS~ahlL~~ 164 (576)
+++.-++.-+..+.+||..
T Consensus 76 ~s~~v~~~r~~~le~ll~~ 94 (687)
T PRK09130 76 NTPMVKKAREGVMEFLLIN 94 (687)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6666666666666666653
No 189
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=21.97 E-value=2.7e+02 Score=33.04 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=44.9
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHhhhccccc-------------cceEEEEECCEE---eeccccccCCCcEEEeecC
Q 008152 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLA-------------ANALISMVNGVL---WDMTRPLEADCDLKLFTFD 146 (576)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~-------------~~~v~a~Vng~l---~dL~~~l~~d~~ve~l~~~ 146 (576)
+|+|++ ||+.++.++ |+|+.+.++......+ =...+++|+|.. ..-..|+.++-.|. .+
T Consensus 1 m~~~~i-dg~~~~~~~-g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~---t~ 75 (776)
T PRK09129 1 MVEIEI-DGKKVEVPE-GSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVF---TR 75 (776)
T ss_pred CeEEEE-CCEEEEeCC-CCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEE---cC
Confidence 378888 899999998 9999999987653221 145666777642 24555665543332 24
Q ss_pred ChhhhHHHHHHHHHHH
Q 008152 147 SDEGRDTFWHSSAHIL 162 (576)
Q Consensus 147 ~~eG~~vy~hS~ahlL 162 (576)
+++-++.-+.-+.+||
T Consensus 76 ~~~~~~~r~~~l~~ll 91 (776)
T PRK09129 76 SEKALKAQKSVMEFLL 91 (776)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5544443344444443
No 190
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=21.89 E-value=1.5e+02 Score=24.84 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=28.4
Q ss_pred CCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHh
Q 008152 194 DLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (576)
Q Consensus 194 ~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~l 230 (576)
+.++|-+.+..|.++||++. .+-=.|..|+.|-..++
T Consensus 42 g~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~EY 80 (84)
T PF10752_consen 42 GEPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKEY 80 (84)
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHHH
Confidence 56899999999999999999 33335677777655543
No 191
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=20.86 E-value=4.2e+02 Score=24.83 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCCC---C------hHHHHHHHHHHHHhCCcEEEEeCCCC-----cHHHHHHH
Q 008152 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE---K------SQPYALQVRDHIYRAGYYVDVDTTDR-----KIQKKVTT 549 (576)
Q Consensus 484 ERlia~L~E~~~g~~P~~laP~qV~Vipv~~---~------~~~~a~~i~~~Lr~~Gi~v~vD~~~~-----slgkkir~ 549 (576)
+..+..+++.|..+++.. .+.++.-+|-.. . ....+..+...+. ..+.|.+|.++. .+.+++.+
T Consensus 12 ~~~~~~~i~~Y~kRl~~~-~~~ei~el~~~~~~~~~~~~~~~~~E~~~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~ 89 (153)
T TIGR00246 12 PKWVKTGFEEYTRRFPKD-APFELIEIPAGKRGKNADIKRILDKEGDRILAAIG-KAHVVTLDIPGKPWTTPQLADTLEK 89 (153)
T ss_pred cHHHHHHHHHHHHhcCCc-CCeEEEEeCCccccccccHHHHHHHHHHHHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHH
Confidence 445666777776666654 677777776442 1 1233555666665 478888998754 36788888
Q ss_pred hHhcCCceEEEecc
Q 008152 550 SNFEIKNPHYFYCP 563 (576)
Q Consensus 550 A~~~g~p~~iIiGp 563 (576)
....|-..+++||-
T Consensus 90 ~~~~g~~i~FvIGG 103 (153)
T TIGR00246 90 WKTDGRDVTLLIGG 103 (153)
T ss_pred HhccCCeEEEEEcC
Confidence 88788678888884
No 192
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=20.36 E-value=43 Score=27.74 Aligned_cols=13 Identities=46% Similarity=1.160 Sum_probs=11.0
Q ss_pred eEEEEcCCcccCC
Q 008152 564 MLLVILPTVYYSW 576 (576)
Q Consensus 564 ~~~~~g~~~~~~~ 576 (576)
-.||+-|-+|+||
T Consensus 20 T~IViSPviywSW 32 (84)
T PRK13718 20 TAIVISPVIYWSW 32 (84)
T ss_pred EEEEecceEEEEe
Confidence 4678889999999
No 193
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=20.29 E-value=3e+02 Score=24.25 Aligned_cols=20 Identities=15% Similarity=0.276 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhCCcEEEEeC
Q 008152 519 YALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 519 ~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
.+..|.+.|...|+.|..|+
T Consensus 18 ~v~~L~~~l~~~~~~v~~d~ 37 (140)
T smart00255 18 FLSHLLEKLRGYGLCVFIDD 37 (140)
T ss_pred HHHHHHHHhhcCCcEEEecC
Confidence 34444444444444444443
No 194
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=20.22 E-value=1.3e+02 Score=28.64 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHHhCCcEEEEeCC
Q 008152 515 KSQPYALQVRDHIYRAGYYVDVDTT 539 (576)
Q Consensus 515 ~~~~~a~~i~~~Lr~~Gi~v~vD~~ 539 (576)
+..+-|..|+..|++.|+.|++-+.
T Consensus 13 qT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 13 QTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred cHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 4567799999999999999998764
Done!