Query 008152
Match_columns 576
No_of_seqs 394 out of 2720
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qf6_A THRRS, threonyl-tRNA sy 100.0 2E-102 8E-107 879.1 45.4 477 83-564 1-599 (642)
2 1nyr_A Threonyl-tRNA synthetas 100.0 1.6E-98 5E-103 850.4 42.0 478 82-564 2-606 (645)
3 3uh0_A Threonyl-tRNA synthetas 100.0 7.9E-56 2.7E-60 481.3 23.7 252 312-564 144-422 (460)
4 1tke_A Threonyl-tRNA synthetas 100.0 8.6E-54 3E-58 424.3 20.8 218 83-304 1-224 (224)
5 1evl_A Threonyl-tRNA synthetas 100.0 7.5E-46 2.6E-50 397.6 24.3 337 184-564 20-358 (401)
6 3a32_A Probable threonyl-tRNA 100.0 9.7E-42 3.3E-46 372.7 18.1 273 283-564 103-406 (471)
7 3ial_A Prolyl-tRNA synthetase; 100.0 3.5E-38 1.2E-42 344.9 14.0 237 284-564 116-371 (518)
8 4hvc_A Bifunctional glutamate/ 100.0 1.2E-36 4.3E-41 333.3 15.2 238 285-564 123-379 (519)
9 1hc7_A Prolyl-tRNA synthetase; 100.0 6.4E-34 2.2E-38 310.6 16.5 236 284-564 105-353 (477)
10 1nj1_A PROR, proline-tRNA synt 100.0 8.1E-33 2.8E-37 303.6 15.1 305 184-564 61-379 (501)
11 1nj8_A Proline-tRNA synthetase 100.0 1.2E-32 3.9E-37 299.7 16.1 236 284-564 99-346 (459)
12 2zt5_A Glycyl-tRNA synthetase; 100.0 1.5E-32 5E-37 310.8 14.1 254 307-564 255-621 (693)
13 2j3l_A Prolyl-tRNA synthetase; 100.0 1.4E-31 4.8E-36 299.2 19.5 327 184-564 37-533 (572)
14 1ati_A Glycyl-tRNA synthetase; 100.0 2.7E-32 9.2E-37 299.8 12.3 242 307-564 198-461 (505)
15 2i4l_A Proline-tRNA ligase; al 100.0 5.1E-32 1.7E-36 294.9 13.6 330 184-564 57-428 (458)
16 1g5h_A Mitochondrial DNA polym 100.0 2.8E-32 9.6E-37 295.5 6.3 227 303-564 148-404 (454)
17 3ikl_A DNA polymerase subunit 100.0 1.3E-31 4.4E-36 287.5 8.6 223 307-564 162-414 (459)
18 4e51_A Histidine--tRNA ligase; 100.0 4.7E-29 1.6E-33 271.9 19.8 228 315-563 128-417 (467)
19 1qe0_A Histidyl-tRNA synthetas 100.0 4.3E-28 1.5E-32 260.9 16.7 231 312-563 95-388 (420)
20 1v4p_A Alanyl-tRNA synthetase; 99.9 6.1E-27 2.1E-31 219.0 13.8 128 149-282 2-136 (157)
21 1h4v_B Histidyl-tRNA synthetas 99.9 2.8E-24 9.5E-29 231.4 18.0 323 184-564 7-387 (421)
22 1htt_A Histidyl-tRNA synthetas 99.9 4.7E-24 1.6E-28 229.7 17.8 313 198-563 17-388 (423)
23 1wu7_A Histidyl-tRNA synthetas 99.9 6.2E-25 2.1E-29 237.5 9.7 230 315-563 97-391 (434)
24 3net_A Histidyl-tRNA synthetas 99.9 1.7E-22 5.7E-27 220.2 18.6 251 285-564 96-431 (465)
25 4g85_A Histidine-tRNA ligase, 99.9 1.6E-21 5.5E-26 215.3 16.7 241 312-563 152-479 (517)
26 4g84_A Histidine--tRNA ligase, 99.8 1.7E-20 5.7E-25 204.2 18.2 241 312-563 99-426 (464)
27 3lc0_A Histidyl-tRNA synthetas 99.8 2.3E-19 7.8E-24 194.8 17.5 229 313-563 119-420 (456)
28 3kew_A DHHA1 domain protein; s 99.8 1E-19 3.6E-24 181.3 13.1 175 92-283 36-216 (241)
29 2ztg_A Alanyl-tRNA synthetase; 99.8 1.3E-19 4.4E-24 203.7 15.1 138 139-283 583-724 (739)
30 2dq3_A Seryl-tRNA synthetase; 99.8 1.6E-19 5.6E-24 194.0 9.8 161 312-511 246-423 (425)
31 2dq0_A Seryl-tRNA synthetase; 99.8 5E-19 1.7E-23 191.4 10.3 160 312-506 267-438 (455)
32 2zze_A Alanyl-tRNA synthetase; 99.7 9.5E-18 3.3E-22 188.6 16.7 140 137-283 594-738 (752)
33 2e1b_A PH0108, 216AA long hypo 99.7 1.4E-17 4.7E-22 163.4 13.5 157 93-283 35-203 (216)
34 1wwt_A Threonyl-tRNA synthetas 99.7 3.4E-18 1.2E-22 144.1 1.1 82 78-159 6-87 (88)
35 1wle_A Seryl-tRNA synthetase; 99.7 1.3E-16 4.3E-21 173.8 9.3 162 312-510 297-473 (501)
36 1ses_A Seryl-tRNA synthetase; 99.6 5.4E-17 1.9E-21 174.1 5.5 155 312-506 240-412 (421)
37 3vbb_A Seryl-tRNA synthetase, 99.5 1.1E-14 3.9E-19 158.2 8.9 169 312-514 286-472 (522)
38 3lss_A Seryl-tRNA synthetase; 99.5 3.3E-14 1.1E-18 153.7 11.0 169 312-515 284-472 (484)
39 3qne_A Seryl-tRNA synthetase, 99.5 1.3E-14 4.6E-19 156.6 7.6 167 313-514 264-446 (485)
40 3err_A Fusion protein of micro 99.5 1.7E-14 5.7E-19 158.7 8.2 159 312-505 349-520 (536)
41 3od1_A ATP phosphoribosyltrans 99.4 6E-13 2E-17 142.0 15.2 219 313-562 99-390 (400)
42 2cja_A Seryl-tRNA synthetase; 99.4 1E-13 3.6E-18 151.5 7.7 182 283-504 317-510 (522)
43 1v95_A Nuclear receptor coacti 99.3 3.7E-12 1.3E-16 113.9 6.9 61 503-563 7-69 (130)
44 2kmm_A Guanosine-3',5'-BIS(dip 99.1 7.2E-11 2.5E-15 95.3 7.4 66 83-149 2-67 (73)
45 3mf2_A BLL0957 protein; aminoa 99.1 1.7E-10 5.7E-15 119.0 10.1 69 315-386 166-234 (346)
46 3hvz_A Uncharacterized protein 98.9 1.5E-09 5.1E-14 88.8 7.3 67 82-149 6-72 (78)
47 1usy_A ATP phosphoribosyltrans 98.9 7.1E-10 2.4E-14 112.5 4.6 89 313-412 65-157 (275)
48 1z7m_A ATP phosphoribosyltrans 98.5 1.1E-07 3.7E-12 99.4 5.9 69 313-387 113-182 (344)
49 3rac_A Histidine-tRNA ligase; 98.4 1.5E-07 5.1E-12 99.4 5.5 74 314-388 114-190 (373)
50 3dsq_A Pyrrolysyl-tRNA synthet 97.1 0.00051 1.7E-08 69.8 6.0 65 314-384 146-211 (288)
51 1tyg_B YJBS; alpha beta barrel 95.3 0.026 8.9E-07 46.7 5.8 60 82-145 19-83 (87)
52 2l32_A Small archaeal modifier 95.1 0.015 5.2E-07 46.6 3.6 60 83-147 2-64 (74)
53 3qtc_A Pyrrolysyl-tRNA synthet 94.7 0.029 9.9E-07 56.7 5.5 61 314-382 152-212 (290)
54 1f0z_A THis protein; ubiquitin 94.3 0.063 2.2E-06 41.7 5.3 57 85-145 2-62 (66)
55 1ryj_A Unknown; beta/alpha pro 94.2 0.076 2.6E-06 41.8 5.7 59 83-145 4-66 (70)
56 2k5p_A THis protein, thiamine- 93.6 0.074 2.5E-06 43.0 4.6 59 84-145 1-65 (78)
57 2cu3_A Unknown function protei 93.4 0.19 6.6E-06 38.6 6.6 55 86-145 2-60 (64)
58 2kl0_A Putative thiamin biosyn 93.3 0.08 2.7E-06 42.2 4.3 57 85-146 2-62 (73)
59 1nnh_A Asparaginyl-tRNA synthe 88.9 0.26 8.8E-06 49.8 3.8 34 317-355 88-125 (294)
60 2eki_A DRG 1, developmentally- 85.9 2 6.9E-05 35.7 6.9 52 94-146 29-88 (93)
61 1rws_A Hypothetical protein PF 85.3 0.43 1.5E-05 38.1 2.5 53 90-145 21-73 (77)
62 1eov_A ASPRS, aspartyl-tRNA sy 81.1 1.1 3.6E-05 48.6 4.2 47 317-367 244-293 (487)
63 1vjk_A Molybdopterin convertin 81.1 1.3 4.4E-05 36.9 3.9 51 94-145 31-94 (98)
64 3a74_A Lysyl-tRNA synthetase; 75.8 2.1 7.2E-05 46.3 4.6 51 317-374 242-293 (493)
65 3a5y_A GENX, putative lysyl-tR 75.7 2 6.7E-05 44.4 4.1 45 319-367 111-156 (345)
66 1n9w_A Aspartyl-tRNA synthetas 75.0 2 6.8E-05 45.6 4.1 45 318-366 191-238 (422)
67 1fm0_D Molybdopterin convertin 74.8 8.3 0.00028 30.3 6.9 45 100-144 25-76 (81)
68 1wyd_A Hypothetical aspartyl-t 74.8 2.4 8.3E-05 45.0 4.6 44 317-364 199-244 (429)
69 1x54_A Asparaginyl-tRNA synthe 74.4 2.5 8.6E-05 44.9 4.7 43 317-363 200-244 (434)
70 3gk0_A PNP synthase, pyridoxin 73.8 11 0.00039 37.2 8.7 74 471-558 95-180 (278)
71 1e1o_A Lysyl-tRNA synthetase, 73.3 2.7 9.3E-05 45.6 4.7 50 318-374 252-302 (504)
72 2q5w_D Molybdopterin convertin 72.5 2.7 9.1E-05 33.0 3.3 46 100-145 25-73 (77)
73 2g1e_A Hypothetical protein TA 72.1 5.5 0.00019 32.0 5.2 52 93-145 18-86 (90)
74 3o6c_A PNP synthase, pyridoxin 72.0 7.1 0.00024 38.3 6.7 75 470-558 65-149 (260)
75 1m5w_A Pyridoxal phosphate bio 71.9 17 0.00058 35.3 9.4 74 471-558 67-152 (243)
76 3po0_A Small archaeal modifier 69.6 5.2 0.00018 32.3 4.6 45 100-144 27-84 (89)
77 3dwg_C 9.5 kDa culture filtrat 68.6 6.4 0.00022 32.1 4.9 45 100-144 25-88 (93)
78 4ah6_A Aspartate--tRNA ligase, 62.1 5.8 0.0002 44.0 4.4 44 319-366 218-262 (617)
79 1j6x_A Autoinducer-2 productio 60.9 26 0.00088 31.8 7.6 57 153-213 52-109 (160)
80 2xgt_A Asparaginyl-tRNA synthe 60.6 6.3 0.00022 41.8 4.3 44 319-367 199-245 (435)
81 2hj1_A Hypothetical protein; s 60.3 4.7 0.00016 33.7 2.5 57 94-151 30-91 (97)
82 3l4g_A Phenylalanyl-tRNA synth 60.2 8.6 0.00029 41.6 5.2 62 315-384 345-407 (508)
83 3bju_A Lysyl-tRNA synthetase; 56.1 8.6 0.00029 41.8 4.4 44 319-366 246-290 (521)
84 1vje_A Autoinducer-2 productio 55.4 34 0.0012 31.2 7.5 57 153-213 54-111 (166)
85 2l52_A Methanosarcina acetivor 53.5 18 0.00062 29.8 5.1 62 82-145 4-95 (99)
86 1l0w_A Aspartyl-tRNA synthetas 52.0 12 0.00041 41.2 4.8 49 319-374 214-263 (580)
87 1c0a_A Aspartyl tRNA synthetas 50.9 12 0.00041 41.3 4.6 44 319-366 208-252 (585)
88 4ex5_A Lysine--tRNA ligase; st 50.4 13 0.00045 40.4 4.7 44 318-365 273-317 (529)
89 3i7f_A Aspartyl-tRNA synthetas 50.0 12 0.00041 40.9 4.3 47 318-367 311-359 (548)
90 2du3_A O-phosphoseryl-tRNA syn 49.2 21 0.00072 38.8 6.0 64 314-385 202-267 (534)
91 3m4p_A Ehasnrs, asparaginyl-tR 45.4 16 0.00055 38.9 4.4 46 318-367 222-269 (456)
92 3nem_A Aspartyl-tRNA synthetas 45.3 18 0.00061 38.4 4.7 46 318-367 204-252 (438)
93 3rpf_C Molybdopterin convertin 45.2 19 0.00064 27.9 3.7 59 84-144 3-69 (74)
94 1j6w_A Autoinducer-2 productio 44.8 54 0.0019 30.1 7.2 57 153-213 51-112 (175)
95 1j98_A Autoinducer-2 productio 41.9 68 0.0023 29.0 7.2 57 153-213 51-113 (157)
96 1b7y_A Phers, protein (phenyla 40.7 25 0.00087 36.1 4.8 58 314-379 190-248 (350)
97 1wxq_A GTP-binding protein; st 39.3 12 0.0004 39.2 2.1 53 92-145 341-395 (397)
98 3pzy_A MOG; ssgcid, seattle st 33.4 49 0.0017 29.9 5.1 62 500-562 3-74 (164)
99 2qjl_A URM1, ubiquitin-related 29.6 73 0.0025 26.0 5.1 45 100-144 31-94 (99)
100 1v8c_A MOAD related protein; r 28.4 43 0.0015 30.6 3.7 45 101-145 23-83 (168)
101 1wgk_A Riken cDNA 2900073H19 p 28.2 76 0.0026 26.9 5.0 63 82-144 12-103 (114)
102 3qay_A Endolysin; amidase A/B 26.9 1.4E+02 0.0049 27.1 7.1 46 516-561 31-84 (180)
103 2rhq_A Phenylalanyl-tRNA synth 26.7 61 0.0021 32.1 4.9 57 315-379 130-187 (294)
104 3pco_A Phenylalanyl-tRNA synth 25.7 1E+02 0.0034 31.3 6.3 61 314-383 181-244 (327)
105 1jwq_A N-acetylmuramoyl-L-alan 23.9 1.6E+02 0.0055 26.8 6.9 45 517-561 31-79 (179)
106 3h16_A TIR protein; bacteria T 22.5 48 0.0017 29.3 2.9 49 504-552 20-72 (154)
107 1mkz_A Molybdenum cofactor bio 22.4 1.6E+02 0.0056 26.4 6.6 60 503-562 9-77 (172)
108 3rfq_A Pterin-4-alpha-carbinol 21.9 1.1E+02 0.0039 28.1 5.4 61 502-562 28-97 (185)
109 2ibo_A Hypothetical protein SP 21.4 72 0.0025 26.7 3.5 32 507-538 7-40 (104)
110 3jrn_A AT1G72930 protein; TIR 20.9 55 0.0019 30.1 2.9 47 504-550 8-55 (176)
111 1vk8_A Hypothetical protein TM 20.7 81 0.0028 26.6 3.7 32 506-537 19-52 (106)
No 1
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=2.3e-102 Score=879.12 Aligned_cols=477 Identities=41% Similarity=0.722 Sum_probs=457.2
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHHH
Q 008152 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHIL 162 (576)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahlL 162 (576)
+|+||+|||++++++. +|||+|||++|++++++.+++|+|||++|||++||+.||+|++++|+|++|++++|||++|||
T Consensus 1 ~~~~~~~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~~~~~~~~HSa~HlL 79 (642)
T 1qf6_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLL 79 (642)
T ss_dssp -CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTTSHHHHHHHHHHHHHHH
T ss_pred CceEEcCCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecCcHHHHHHHHHHHHHHH
Confidence 3899999999999987 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhcc--Ccch
Q 008152 163 GQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFK 237 (576)
Q Consensus 163 ~~A~~~~f-g~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~--~~~K 237 (576)
++|++++| ++++++||+++ +||||||+. +.++|++|+++||++|+++| |+||++.++|++||+++|++ ++||
T Consensus 80 ~~Al~~~~~~~~~~~G~~i~--~gfy~Df~~-~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk 156 (642)
T 1qf6_A 80 GHAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK 156 (642)
T ss_dssp HHHHHHHCTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCCcEEEECCccC--CeeEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcch
Confidence 99999999 67999999999 999999987 56899999999999999999 99999999999999999987 7899
Q ss_pred hhhc-ccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhh-----
Q 008152 238 VEII-NDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH----- 311 (576)
Q Consensus 238 ~~Ll-~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~----- 311 (576)
++|+ +.+|.++.|++|+||+|+|+|+||||||||+|+.|+|++.+++||+++.++..+||+||++||+++.|.+
T Consensus 157 ~~li~~~~~~~~~v~vy~~g~~~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~~ 236 (642)
T 1qf6_A 157 VSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRL 236 (642)
T ss_dssp HHHHHHHSCTTCCCEEEEETTEEECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSSHHHHHHHHHHH
T ss_pred hhhhhcccCCCCceEEEEECCEEEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeeccccCchhHHhhhhhhh
Confidence 9999 7776667899999999999999999999999999999999999999999999999999999999997732
Q ss_pred --------------------------------------------------------------------------------
Q 008152 312 -------------------------------------------------------------------------------- 311 (576)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (576)
T Consensus 237 eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~ 316 (642)
T 1qf6_A 237 EEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDA 316 (642)
T ss_dssp HHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGG
T ss_pred hccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccc
Confidence
Q ss_pred ------------------------------hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHH
Q 008152 312 ------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDE 361 (576)
Q Consensus 312 ------------------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e 361 (576)
+|+++|++++++|.+||+|.+|...||+|+|||+|+|+|+||+++++++|
T Consensus 317 my~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e 396 (642)
T 1qf6_A 317 MFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE 396 (642)
T ss_dssp CEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHH
T ss_pred ceeeecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHH
Confidence 78899999999999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCC-eEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccC
Q 008152 362 VRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKR 440 (576)
Q Consensus 362 ~~~~l~~~~~i~~~lG~-~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr 440 (576)
+.++++++.++|+.||+ ++.+.++++|++++|+.+.|+.|++.++++|+..|++|++++|+++||||++|+.+.|++|+
T Consensus 397 ~~~~i~~~~~i~~~lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~ 476 (642)
T 1qf6_A 397 VNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDR 476 (642)
T ss_dssp HHHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCc
Confidence 99999999999999999 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHH
Q 008152 441 KFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYA 520 (576)
Q Consensus 441 ~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a 520 (576)
.|+|+|+|+||+++.|||+.|.+.+ |++.+|+|+|++++||+||++++|+|+++|.||+|+||+||+|+|++++..++|
T Consensus 477 ~~~~gti~~df~l~~r~~~~y~~~~-g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a 555 (642)
T 1qf6_A 477 AWQCGTVQLDFSLPSRLSASYVGED-NERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYV 555 (642)
T ss_dssp EEEEEEEEEESSHHHHTTCCEECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHH
T ss_pred eEEeeeEEEeccCCccCCCEEEecC-CCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHH
Confidence 9999999999999999999998877 778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 521 LQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 521 ~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
.+|++.|+++|++|++|+++.++|+|||+|++.|+||++|||+-
T Consensus 556 ~~v~~~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~~ivvG~~ 599 (642)
T 1qf6_A 556 NELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDK 599 (642)
T ss_dssp HHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTT
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECch
Confidence 99999999999999999999999999999999999999999873
No 2
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=1.6e-98 Score=850.43 Aligned_cols=478 Identities=40% Similarity=0.721 Sum_probs=456.5
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHH
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHI 161 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahl 161 (576)
.+|+|++|||++++++. |||++|||+.+++++++.+|+|+|||++|||++||+.||+|+|++++|++|+++||||++||
T Consensus 2 ~~~~i~~~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~~~~g~~~~~HSa~Hl 80 (645)
T 1nyr_A 2 EQINIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHL 80 (645)
T ss_dssp --CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTTSHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeeccchhHHHHHHHHHHHH
Confidence 46899999999999887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchh
Q 008152 162 LGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKV 238 (576)
Q Consensus 162 L~~A~~~~f-g~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~ 238 (576)
|++|++++| +.++++||+++ +||||||.. +.++|++|+++||++|+++| |+||++.+++++||+++|++++||+
T Consensus 81 L~~A~~~~~~~~~~~~g~~~~--~g~~~Df~~-~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~ 157 (645)
T 1nyr_A 81 MAHAIKRLYGNVKFGVGPVIE--GGFYYDFDI-DQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKL 157 (645)
T ss_dssp HHHHHHHHSSSCEECCCCEET--TEEEEEEEC-SSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCcEEEECCccC--CceEEEecC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchH
Confidence 999999999 57799999998 999999986 56899999999999999999 9999999999999999999888999
Q ss_pred hhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhh-------
Q 008152 239 EIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------- 311 (576)
Q Consensus 239 ~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~------- 311 (576)
+|++.+|.++.|++|+||+|+|+|+||||||||+|+.|+|+++++|||++..+++.+||+||++|++++.|.+
T Consensus 158 ~li~~~~~~~~vrv~~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~~~l~~~~~~l~e 237 (645)
T 1nyr_A 158 ELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEE 237 (645)
T ss_dssp HHHCCCSSSCCCEEEEETTEEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCeeEEEEECCEEEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCHHHhhhhhhhhhh
Confidence 9999987666899999999999999999999999999999999999999999999999999999999888844
Q ss_pred --------------------------------------------------------------------------------
Q 008152 312 -------------------------------------------------------------------------------- 311 (576)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (576)
T Consensus 238 a~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~m 317 (645)
T 1nyr_A 238 RKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDM 317 (645)
T ss_dssp HHHTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSS
T ss_pred hhhhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCc
Confidence
Q ss_pred -------------------------------hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHH
Q 008152 312 -------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKD 360 (576)
Q Consensus 312 -------------------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~ 360 (576)
+|+++|++++++|.+||+|.+|...||+|+|||+|+|+|+||+++++.+
T Consensus 318 f~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d 397 (645)
T 1nyr_A 318 FPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKE 397 (645)
T ss_dssp CCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHH
T ss_pred ceeEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHH
Confidence 6789999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCe-EEEEEccCC----CccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEe
Q 008152 361 EVRGVLEFIDYAYRIFGFT-YELKLSTRP----EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVS 435 (576)
Q Consensus 361 e~~~~l~~~~~i~~~lG~~-~~l~lstr~----~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~ 435 (576)
|++++++++.++|+.||++ +.+.+++++ ++++|+.+.|++++..|+++|+..|++|..++|+++||||++++.+.
T Consensus 398 ~~~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~ 477 (645)
T 1nyr_A 398 EFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVK 477 (645)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehh
Confidence 9999999999999999995 999999998 68899999999999999999999999999999999999999999999
Q ss_pred ccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC-C
Q 008152 436 DALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS-E 514 (576)
Q Consensus 436 d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~-~ 514 (576)
|++|+.|+|+|+|+||+++.+||++|++.+ |+..+|+|||++++||+||++++|+|+++|.||.|+||.||+|+|++ +
T Consensus 478 d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~-g~~~~P~~ih~~~~GgieR~i~~liE~~~~~~P~~lap~qv~vip~~~~ 556 (645)
T 1nyr_A 478 TAMGKEETLSTAQLDFLLPERFDLTYIGQD-GEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVD 556 (645)
T ss_dssp CTTSCCEEEEEEEEESSHHHHTTCCEECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHH
T ss_pred hhhCchhhcceEEeecccccccceEEECCC-CCccCcEEEEeccCCcHHHHHHHHHHHhcCCCCCCCCCceEEEEEcccH
Confidence 999999999999999999999999999877 77889999999999999999999999999999999999999999999 8
Q ss_pred ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 515 KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 515 ~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
+..++|.+|++.|+++|++|++|+++.++|+|||+|++.|+||++|+|+-
T Consensus 557 ~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k~~~a~~~g~p~~iivG~~ 606 (645)
T 1nyr_A 557 LHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDK 606 (645)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHHTCSEEEEECHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEccc
Confidence 89999999999999999999999999999999999999999999999963
No 3
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=7.9e-56 Score=481.28 Aligned_cols=252 Identities=46% Similarity=0.893 Sum_probs=244.1
Q ss_pred hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHH-HHhCCe---------EE
Q 008152 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-RIFGFT---------YE 381 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~-~~lG~~---------~~ 381 (576)
+|+++|++++++|.+||+|.+|...||+|+|||+|+|+|+||+++++++|+.++++++.++| +.||++ ++
T Consensus 144 s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~ 223 (460)
T 3uh0_A 144 SYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYF 223 (460)
T ss_dssp BGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCE
T ss_pred cccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceE
Confidence 68999999999999999999987799999999999999999999999999999999999999 999997 89
Q ss_pred EEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEE
Q 008152 382 LKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGY 461 (576)
Q Consensus 382 l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y 461 (576)
+.++|+|++++|+.++|++|+..|+++|+..|.+|.+|||+|+|||||||+.+.|++|+.|||+|+||||+++.+||+.|
T Consensus 224 ~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y 303 (460)
T 3uh0_A 224 INFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKF 303 (460)
T ss_dssp EEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEEEEEECTTSCEEEEEEEEEESHHHHHTTCCE
T ss_pred EEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEEEEEEccCCCeeeecccccccccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC---hHHHHHHHHHHHHhC--------
Q 008152 462 SAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEK---SQPYALQVRDHIYRA-------- 530 (576)
Q Consensus 462 ~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~---~~~~a~~i~~~Lr~~-------- 530 (576)
.+.+ |+..+|+|||++++||+||++++|+|+++|+||+|+||.||+|+|++++ ..++|.+|+++|+++
T Consensus 304 ~~~~-g~~~~P~~ih~~~~Gg~eRli~~Lie~~~g~~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~ 382 (460)
T 3uh0_A 304 KDQD-NSYKRPIMIHRATFGSIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEP 382 (460)
T ss_dssp ECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCC
T ss_pred ECCC-CCccCcEEEecCcchHHHHHHHHHHHHcCCCCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccc
Confidence 9887 7889999999999999999999999999999999999999999999988 899999999999998
Q ss_pred ------CcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 531 ------GYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 531 ------Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|++|++|+++.++|+|||+|++.|+||+||||+-
T Consensus 383 ~~~~~~Gi~v~~D~~~~~lg~k~r~Ad~~g~p~~ivvG~~ 422 (460)
T 3uh0_A 383 VPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDE 422 (460)
T ss_dssp CCTTCCCCCEEECCCSSCHHHHHHHHHHHTCSEEEEECHH
T ss_pred cccCCCCEEEEEECCCCCHHHHHHHHHHcCCCEEEEEcch
Confidence 9999999999999999999999999999999973
No 4
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=100.00 E-value=8.6e-54 Score=424.29 Aligned_cols=218 Identities=36% Similarity=0.650 Sum_probs=208.8
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHHH
Q 008152 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHIL 162 (576)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahlL 162 (576)
+|+|++|||+++++++ |+|+.|+|+.++..+++.+++|+|||++|||++||+.||+|+++++++++|.++||||++|||
T Consensus 1 ~i~I~~p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~~g~~~~~HS~~HlL 79 (224)
T 1tke_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLL 79 (224)
T ss_dssp CCEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTTSHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecCchhHHHHHHHHHHHHH
Confidence 3789999999999998 999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhcc--Ccch
Q 008152 163 GQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFK 237 (576)
Q Consensus 163 ~~A~~~~f-g~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~--~~~K 237 (576)
++|++++| ++++++||+++ +||||||+. +.++|++|+++||++|+++| |+||++.+++++||+++|++ +++|
T Consensus 80 ~~A~~~~~~~~~~~~g~~~~--~g~y~d~~~-~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k 156 (224)
T 1tke_A 80 GHAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK 156 (224)
T ss_dssp HHHHHHHSTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCcEEEECCccC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchH
Confidence 99999999 57899999998 999999987 45799999999999999999 99999999999999999987 6689
Q ss_pred hhhccc-CCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccC
Q 008152 238 VEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYP 304 (576)
Q Consensus 238 ~~Ll~~-~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp 304 (576)
++|++. +|.++.|++|+||+|+|+|+||||||||+|+.|+|+++++|||++++++++||||||++||
T Consensus 157 ~~l~~~~~~~~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 157 VSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp HHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred HHHhccccCCCCeeEEEEeCCEEEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 999997 7667889999999999999999999999999999999999999999999999999999997
No 5
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=7.5e-46 Score=397.56 Aligned_cols=337 Identities=34% Similarity=0.603 Sum_probs=278.7
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+| |+. +....-..+|++.+++.. ...++...+|.-+-.++|+..|.- .... +. +|+. |
T Consensus 20 ~G~~-d~l----P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~-~~~~----~e---m~~~----d-- 80 (401)
T 1evl_A 20 PGMV-FWH----NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHW-DNYK----DA---MFTT----S-- 80 (401)
T ss_dssp TTCC-EEC----HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHH-HHSG----GG---CCEE----E--
T ss_pred Ccce-EEC----chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcH-hhhc----hh---hEeE----e--
Confidence 6875 553 233455677888887777 666776666654444455432210 0000 00 1210 0
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
....-+.|++.......|++ .....+|+++|++++++|.+||+|.+|...||+|+|
T Consensus 81 -----------------~~~~~~~LrP~~~~~~~~~~-------~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~r 136 (401)
T 1evl_A 81 -----------------SENREYCIKPMNCPGHVQIF-------NQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVR 136 (401)
T ss_dssp -----------------ETTEEEEECSCSHHHHHHHH-------TSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCS
T ss_pred -----------------cCCceEEEcCCCCHHHHHHH-------HhhhhhhhhCChhhccccceecCCCCcccccccccC
Confidence 01123456654444444443 111236889999999999999999986568999999
Q ss_pred cccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCC-eEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCC
Q 008152 343 RFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421 (576)
Q Consensus 343 eF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~-~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g 421 (576)
||+|.|+|+||+++++++|+.++++++.++|+.||+ ++.+.++++++++.|+.+.|+.++..++++|+..|++++++++
T Consensus 137 eF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~ 216 (401)
T 1evl_A 137 GFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLG 216 (401)
T ss_dssp EEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTTTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETT
T ss_pred cEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence 999999999999888999999999999999999999 5999999998888999999999999999999999999999999
Q ss_pred CCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCC
Q 008152 422 DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFW 501 (576)
Q Consensus 422 ~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~ 501 (576)
+++||||++|+.+.|+.|+.|+|+|+++||+++.+||+.|.+.+ |+..+|+|+|++++||+||++++|+|+++|.||.|
T Consensus 217 ~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~~~-g~~~~p~~~~~~~~GgieRli~~l~e~~~~~~p~~ 295 (401)
T 1evl_A 217 EGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGED-NERKVPVMIHRAILGSMERFIGILTEEFAGFFPTW 295 (401)
T ss_dssp CSBTTBCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTT
T ss_pred CccccCCCcCeEEEecCCCeEEeeeeeeccccccccCCEEECCC-CCCcCcEEEEecCCCcHHHHHHHHHHHhCCcCCCC
Confidence 99999999999999999999999999999998999999998766 67789999999999999999999999988999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 502 LSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 502 laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
++|.||+|+|++++..++|.+|++.||++|++|++|+++.++|+||++|++.|+||++|+|+-
T Consensus 296 ~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~k~~~A~~~g~p~~iiiG~~ 358 (401)
T 1evl_A 296 LAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDK 358 (401)
T ss_dssp TCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECHH
T ss_pred CCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcc
Confidence 999999999999999999999999999999999999998999999999999999999999973
No 6
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=9.7e-42 Score=372.65 Aligned_cols=273 Identities=31% Similarity=0.495 Sum_probs=243.2
Q ss_pred ceeecCCCCCCCceeEeccccCChhhhhhhhh---cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHH
Q 008152 283 SAYWRGNKDRESLQRVYGISYPDKKRLKHAFA---ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIK 359 (576)
Q Consensus 283 ~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~r---elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~ 359 (576)
.-+.|++.......|++ .....+|+ ++|++++++|.+||+|.++++.||+|+|||+|.|+|+||+++++.
T Consensus 103 ~~l~LRP~~t~~i~~~~-------~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~ 175 (471)
T 3a32_A 103 HEFAVKPMNCPYHILLF-------LNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVI 175 (471)
T ss_dssp EEEEECSCSHHHHHHHH-------HHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHH
T ss_pred cEEEEccccHHHHHHHH-------HhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHH
Confidence 34566665555555554 22234787 899999999999999999988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hCC----e-EEEEEccCC-----CccCCChHHHHHHHHHHHHHHHHc----CCCcEEcCCCCc
Q 008152 360 DEVRGVLEFIDYAYRI-FGF----T-YELKLSTRP-----EKYLGDLATWEKAEAALTEALNEF----GKPWQINEGDGA 424 (576)
Q Consensus 360 ~e~~~~l~~~~~i~~~-lG~----~-~~l~lstr~-----~~~~G~~~~~~~a~~~L~~~l~~~----~~~~~~~~g~~a 424 (576)
+|++++++++.++|+. ||+ + +.+.+++++ ++++|..+.|+++++.+.+.++.. +.++.++++.++
T Consensus 176 de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 255 (471)
T 3a32_A 176 DVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAA 255 (471)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSB
T ss_pred HHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchh
Confidence 9999999999999999 999 5 999999998 788999999999998887776554 888889999999
Q ss_pred ccccceeEEEec---cccCceecceeeecccCCceeeeEEee--cCCCcccccEEEEecccccHHHHHHHHHHhcCCCCC
Q 008152 425 FYGPKIDISVSD---ALKRKFQCATLQLDFQLPDRFNLGYSA--EDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWP 499 (576)
Q Consensus 425 fygpkid~~~~d---~~gr~~~~~tiqld~~~~~rf~l~y~~--~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P 499 (576)
||||+++..+.| ++++.++++++++|++++.+||++|.+ .+ |.. .|+++|++++||+||++++++|+++|.||
T Consensus 256 ~~gp~i~~~l~d~~~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~-G~~-e~~~i~~~i~GgieRli~~lie~~~g~~p 333 (471)
T 3a32_A 256 FYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEF-GIE-EVYIIHRALLGSIERFLGVYLEHRRGRMP 333 (471)
T ss_dssp TTBCEEEEEEEEESSSCEEEEEEEEEEEESSHHHHTTHHHHHHHHH-CCS-CEEEEEEEEEEEHHHHHHHHHHHTTTCCC
T ss_pred hCCCccceEEeccHHhhhhhheeeeEEecccccccCCceEeccccC-Cce-eeEEEeccccCcHHHHHHHHHHHhCCCCC
Confidence 999999998888 888999999999999999999999987 55 555 89889999999999999999999888999
Q ss_pred CCCCCceEEEEeCC------CChHHHHHHHHHHHHhCCcEEEEeC-CCCcHHHHHHHhH-hcCCceEEEecce
Q 008152 500 FWLSPRQAIVCPVS------EKSQPYALQVRDHIYRAGYYVDVDT-TDRKIQKKVTTSN-FEIKNPHYFYCPM 564 (576)
Q Consensus 500 ~~laP~qV~Vipv~------~~~~~~a~~i~~~Lr~~Gi~v~vD~-~~~slgkkir~A~-~~g~p~~iIiGp~ 564 (576)
+|+||.||+|+|++ ++..++|.++++.|+++|++|++|+ ++.++|+||++|+ +.|+||+++||+-
T Consensus 334 ~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~~g~k~~~a~~~~gip~~iiiG~~ 406 (471)
T 3a32_A 334 FTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIGAK 406 (471)
T ss_dssp GGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTHHHHHHHHHHTTCCSEEEEECHH
T ss_pred CCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHHhcCCCEEEEECch
Confidence 99999999999998 5688999999999999999999999 8899999999999 9999999999974
No 7
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.5e-38 Score=344.86 Aligned_cols=237 Identities=16% Similarity=0.264 Sum_probs=199.2
Q ss_pred eeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEE-cCchhHHHHH
Q 008152 284 AYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRESQIKDEV 362 (576)
Q Consensus 284 g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF-~~~~~~~~e~ 362 (576)
-+.|++.+.....++| ..--.||++||++++++|.+||+|.+|. .||+|+|||+|+|+|+| |+++++++|+
T Consensus 116 ~l~LrPt~e~~i~~~~-------~~~i~SyrdLPlrl~q~~~~fR~E~~~~-~GL~R~REF~q~e~h~f~~~~e~a~~e~ 187 (518)
T 3ial_A 116 RLALRPTSETAIYSMF-------SKWVRSYKDLPLKIHQTCTIFRHETKNT-KPLIRVREIHWNEAHCCHATAEDAVSQL 187 (518)
T ss_dssp EEEECSSSHHHHHHHH-------HHHCCBGGGCCEEEEEEEEEECTTCCSC-BTTTBCSEEEEEEEEEEESSHHHHHHHH
T ss_pred ceeECCCCcHHHHHHH-------HhhhcccccCCeEEEEEeceecCCCCCC-CCCceeeEEEEeeEEEEECCHHHHHHHH
Confidence 4556654444444443 1223478999999999999999998876 89999999999999999 6779999999
Q ss_pred HHHHHHHHHHH-HHhCCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCc
Q 008152 363 RGVLEFIDYAY-RIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRK 441 (576)
Q Consensus 363 ~~~l~~~~~i~-~~lG~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~ 441 (576)
..+++++.++| +.||+++.+.. +|+ |+ .+.||+|+++||+.+.| ||.
T Consensus 188 ~~~l~~~~~i~~~~LGlp~~~~~--~~~--------~e--------------------~~~gA~yt~~iE~~~pd--gr~ 235 (518)
T 3ial_A 188 SDYWKVIDTIFSDELCFKGQKLR--RVC--------WD--------------------RFPGADYSEVSDVVMPC--GRV 235 (518)
T ss_dssp HHHHHHHHHHHTTTTCCCCEEEE--ECG--------GG--------------------CCTTCSEEEEEEEECTT--SCE
T ss_pred HHHHHHHHHHHHHhcCCcEEeee--cCh--------hh--------------------ccCCCccceEEEEEcCC--CCE
Confidence 99999999999 99999965443 221 11 12368899999887665 899
Q ss_pred eecceee-ecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCC----CCCCCCCCceEEEEeCC---
Q 008152 442 FQCATLQ-LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKG----KWPFWLSPRQAIVCPVS--- 513 (576)
Q Consensus 442 ~~~~tiq-ld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g----~~P~~laP~qV~Vipv~--- 513 (576)
+|++|+| ||++++.+||++|.+++ |....| |++++|+.+|+|++|+|++++ +||+||||+||+|||++
T Consensus 236 ie~gt~~~Lg~~~s~rf~i~y~d~~-g~~~~~---h~~~~G~~~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~ 311 (518)
T 3ial_A 236 LQTAGIHNLGQRFSSTFDILYANKA-NESVHP---YLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGK 311 (518)
T ss_dssp EEEEEEEEEETHHHHHTTCCEECTT-CCEECC---EEEEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSC
T ss_pred EEEeceecccchhhhhcCcEEECCC-CCEeee---EEeccchHHHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCc
Confidence 9999998 89999999999999877 665555 678888779999999999863 89999999999999998
Q ss_pred -------CChHHHHHHHHHHHHhC-CcEEEEeCC-CCcHHHHHHHhHhcCCceEEEecce
Q 008152 514 -------EKSQPYALQVRDHIYRA-GYYVDVDTT-DRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 514 -------~~~~~~a~~i~~~Lr~~-Gi~v~vD~~-~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
+++.++|.+|++.|+++ |++|.+|++ +.++|+||++|++.|+||+|+|||-
T Consensus 312 ~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~k 371 (518)
T 3ial_A 312 KNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQR 371 (518)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred cccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHHHHHcCCCEEEEECcc
Confidence 34679999999999999 999999998 8999999999999999888888874
No 8
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=333.29 Aligned_cols=238 Identities=16% Similarity=0.174 Sum_probs=198.6
Q ss_pred eecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeE-EcCchhHHHHHH
Q 008152 285 YWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVR 363 (576)
Q Consensus 285 ~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~~~~~~e~~ 363 (576)
+.|++.+.....++| ..-..||++||++++++|.+||+|.+|. .||+|+|||+|+|+|+ ||+++++++|+.
T Consensus 123 l~LrPtse~~i~~~~-------~~~i~SyrdLPlrl~q~g~~fR~E~~~~-~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~ 194 (519)
T 4hvc_A 123 IAIRPTSETVMYPAY-------AKWVQSHRDLPIKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHSAFATMEEAAEEVL 194 (519)
T ss_dssp EEECSSSHHHHHHHH-------HHHCSSGGGCCEEEEEEEEEECCCCSCC-BTTTBCSEEEEEEEEEEESSHHHHHHHHH
T ss_pred eeeCCCCcHHHHHHH-------HhhccccccCCeEEEEEcCeeeCCCCCC-CCCcceeEEEEeeEEEEecCHHHHHHHHH
Confidence 556554444444433 1223478999999999999999998887 8999999999999998 888899999999
Q ss_pred HHHHHHHHHHHHh-CCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCce
Q 008152 364 GVLEFIDYAYRIF-GFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKF 442 (576)
Q Consensus 364 ~~l~~~~~i~~~l-G~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~ 442 (576)
.+++++.++|+.| |+++.+..++++++++|....|+ + + .+.|+.||.|
T Consensus 195 ~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~------------------i------------E-a~~p~~gr~~ 243 (519)
T 4hvc_A 195 QILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTT------------------I------------E-AFISASGRAI 243 (519)
T ss_dssp HHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEE------------------E------------E-EEETTTTEEE
T ss_pred HHHHHHHHHHHHhcCCcceeeecCCccccCCchhhee------------------e------------e-eeeccCCCEE
Confidence 9999999999997 99988778888888877664321 1 1 1236789999
Q ss_pred eccee-eecccCCceeeeEEeecC-CCcccccEEEEecccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEeCC---
Q 008152 443 QCATL-QLDFQLPDRFNLGYSAED-EAKTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPVS--- 513 (576)
Q Consensus 443 ~~~ti-qld~~~~~rf~l~y~~~~-~g~~~~P~ii~~a~~GgiERlia~L~E~~~----g~~P~~laP~qV~Vipv~--- 513 (576)
|++|+ ||+++++.+||+.|.+++ +|.. .++|++++|..+|++++|+|+++ +.||+|+||+||+|||++
T Consensus 244 q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~---~~vh~~~~Gi~~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~ 320 (519)
T 4hvc_A 244 QGGTSHHLGQNFSKMFEIVFEDPKIPGEK---QFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITN 320 (519)
T ss_dssp EEEEEEEEETHHHHHHTCEEECTTSTTCE---EECEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC--
T ss_pred eecccccccchhhhhcCcEEeccccCCCE---EEEEEccccHHHHHHHHHHHHhCccccccccccCCCeEEEEEEecCcc
Confidence 99999 799999999999998753 2332 35688888866999999999864 489999999999999998
Q ss_pred -------CChHHHHHHHHHHHHhCCcEEEEeCCCC-cHHHHHHHhHhcCCceEEEecce
Q 008152 514 -------EKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 514 -------~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~-slgkkir~A~~~g~p~~iIiGp~ 564 (576)
++..++|.+|++.|+++|++|++|+++. ++|+||++|++.|+||+|+|||-
T Consensus 321 ~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ael~GiP~~ivIG~k 379 (519)
T 4hvc_A 321 ALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPR 379 (519)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHhcCCCEEEEECch
Confidence 3578899999999999999999999985 99999999999999999999874
No 9
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=6.4e-34 Score=310.62 Aligned_cols=236 Identities=17% Similarity=0.223 Sum_probs=191.4
Q ss_pred eeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEE-cCchhHHHHH
Q 008152 284 AYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRESQIKDEV 362 (576)
Q Consensus 284 g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF-~~~~~~~~e~ 362 (576)
-+.|++.+.....++| .....+|+++|++++++|.+||+|.++ .||+|+|||+|+|+|+| ++++++++|+
T Consensus 105 ~l~LRP~~~~~i~~~~-------~~~~~s~r~LP~rl~qig~vfR~E~~~--rGl~R~REF~q~d~~~~~~~~~~ad~E~ 175 (477)
T 1hc7_A 105 PLAVRPTSETVIGYMW-------SKWIRSWRDLPQLLNQWGNVVRWEMRT--RPFLRTSEFLWQEGHTAHATREEAEEEV 175 (477)
T ss_dssp EEEECSCSHHHHHHHH-------HHHCCBGGGCCEEEEEEEEEECCCSSC--BTTTBCSEEEEEEEEEEESSHHHHHHHH
T ss_pred eEEEcCCCcHHHHHHH-------HhhhhccccCCeeeEeecCEEeCCCCC--CCcceeEEEEEccEEEEeCCHHHHHHHH
Confidence 4556655444444443 222347889999999999999999886 49999999999999995 5568899999
Q ss_pred HHHHHHHHHHH-HHhCCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCc
Q 008152 363 RGVLEFIDYAY-RIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRK 441 (576)
Q Consensus 363 ~~~l~~~~~i~-~~lG~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~ 441 (576)
..+++++.++| +.||+++.+.++++++++.|....| .++..+.| ||.
T Consensus 176 ~~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~------------------------------~ie~~~~d--gr~ 223 (477)
T 1hc7_A 176 RRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTT------------------------------TIEALMKD--GKA 223 (477)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEE------------------------------EEEEECTT--SCE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccce------------------------------EEEEEcCC--CcE
Confidence 99999999999 8999999899988766665543221 23333333 688
Q ss_pred eecceee-ecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEeCCC--
Q 008152 442 FQCATLQ-LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPVSE-- 514 (576)
Q Consensus 442 ~~~~tiq-ld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~----g~~P~~laP~qV~Vipv~~-- 514 (576)
++++|++ |+++++.+||+.|.+.+ |....| |++++|..||++++|+|+++ +.||+|+||+||+|+|+++
T Consensus 224 ~~~gt~~~lg~~~s~~~g~~y~~~~-G~~~~~---~~~~~GigeRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~ 299 (477)
T 1hc7_A 224 LQAGTSHYLGENFARAFDIKFQDRD-LQVKYV---HTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDE 299 (477)
T ss_dssp EEEEEEEEEETHHHHHTTCEEECTT-SCEEEC---EEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTT
T ss_pred EEEeeeEEcccccccccCeEEECCC-CCEEee---eEeeccHHHHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcc
Confidence 9999998 89888999999998765 544343 44555533999999999875 4899999999999999985
Q ss_pred ---ChHHHHHHHHHHHHhCCcEEEEeCC-CCcHHHHHHHhHhcCCceEEEecce
Q 008152 515 ---KSQPYALQVRDHIYRAGYYVDVDTT-DRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 515 ---~~~~~a~~i~~~Lr~~Gi~v~vD~~-~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
+..++|.+|++.|+++|++|++|++ +.++|+||++|++.|+||+|+|||-
T Consensus 300 ~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k~~~a~~~G~p~~iiiG~~ 353 (477)
T 1hc7_A 300 SRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPK 353 (477)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHH
T ss_pred hHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHhhcCCCEEEEECcc
Confidence 5789999999999999999999998 8999999999999999999999974
No 10
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.98 E-value=8.1e-33 Score=303.63 Aligned_cols=305 Identities=16% Similarity=0.209 Sum_probs=221.0
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhcc-CcchhhhcccCCCCCcEEEEEeCCeecc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSD-NNFKVEIINDLPADKTITVYRCGPLVDL 261 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~-~~~K~~Ll~~~~~~~~v~vy~~g~~~D~ 261 (576)
.|+| |+. +....-.+.|++.+++.. . -++...+|.-+-.++|.. .+. ++.. ..+ +|++. |
T Consensus 61 ~G~~-~~~----P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~----~~~f-~~e---my~~~---d- 122 (501)
T 1nj1_A 61 KGMH-VWM----PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIH----VKGF-EDE---VYWVT---H- 122 (501)
T ss_dssp TTCC-EEC----HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHH----HHHT-TTT---CCEEE---E-
T ss_pred CceE-EEC----ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCC----cccC-Ccc---eEEEe---c-
Confidence 5874 553 233455677888888777 7 887777665444444433 111 0000 011 22221 1
Q ss_pred cCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceec
Q 008152 262 CRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRV 341 (576)
Q Consensus 262 c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRv 341 (576)
.|- .....-+.|++.....+.++| .....+|+++|++++++|.+||+|.++ ..||+|+
T Consensus 123 -~g~-------------~~~~~~l~LrPt~e~~i~~~~-------~~~~~s~~~LPlr~~q~g~~fR~E~~~-~rGl~R~ 180 (501)
T 1nj1_A 123 -GGL-------------SKLQRKLALRPTSETVMYPMF-------ALWVRSHTDLPMRFYQVVNTFRYETKH-TRPLIRV 180 (501)
T ss_dssp -ETT-------------EEEEEEEEECSSSHHHHHHHH-------HHHCCBTTTCCEEEEEEEEEECCCCSC-CBTTTBC
T ss_pred -CCC-------------cccCCeeEEccCCCHHHHHHH-------HhhhcccccCCEEEEeecCEeeCCCCC-CCCCcee
Confidence 010 001234567765555555554 222237889999999999999999984 4699999
Q ss_pred cccc-ccCeeE-EcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEc
Q 008152 342 RRFQ-QDDAHI-FCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQIN 419 (576)
Q Consensus 342 reF~-q~da~i-F~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~ 419 (576)
|||+ |.|+|+ |++++++++|+.++++++.++|+.||+++++.++++++.+.|....
T Consensus 181 REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~e~~~~a~~~---------------------- 238 (501)
T 1nj1_A 181 REITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYT---------------------- 238 (501)
T ss_dssp SEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTTCSEE----------------------
T ss_pred EEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchhhcCCcccc----------------------
Confidence 9999 999997 5666889999999999999999999999888887654444332211
Q ss_pred CCCCcccccceeEEEeccccCceecceee-ecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcC---
Q 008152 420 EGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYK--- 495 (576)
Q Consensus 420 ~g~~afygpkid~~~~d~~gr~~~~~tiq-ld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~--- 495 (576)
-.++..+.| |+.++++|++ ++.+.+.+||+.|.+.+ |+...| |++++|..||+|++|+|+++
T Consensus 239 --------~die~~l~~--g~~~ei~t~~~lg~~~a~~~~~ry~~~~-g~~~~~---h~~g~GigeRli~aliE~~~d~~ 304 (501)
T 1nj1_A 239 --------VAFDTLMPD--GKTLQIGTVHNLGQTFARTFEIKFETPE-GDHEYV---HQTCYGLSDRVIASVIAIHGDES 304 (501)
T ss_dssp --------EEEEEECTT--SCEEEEEEEEEEETHHHHHHTCEEECTT-SCEEEC---EEEEEEECTHHHHHHHHHTCCSS
T ss_pred --------eEEEEEcCC--CCEEEEEEEEeccccchhhcCeEEECCC-CCEEee---eeccccHHHHHHHHHHHHcCccc
Confidence 123333333 8889999996 88888999999998765 554444 44455422999999999875
Q ss_pred C-CCCCCCCCceEEEEeC-C-C---ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 496 G-KWPFWLSPRQAIVCPV-S-E---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 496 g-~~P~~laP~qV~Vipv-~-~---~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
| .||+|++|+||+|+|+ + + +..++|.+|++.|+++|++|++|+++.++|+||++|++.|+||+|+|||-
T Consensus 305 Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~~a~~~G~p~~iiiG~~ 379 (501)
T 1nj1_A 305 GLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPR 379 (501)
T ss_dssp SEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHEECSEEEEECHH
T ss_pred CccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcc
Confidence 2 7999999999999999 5 4 57899999999999999999999999999999999999999999999974
No 11
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.98 E-value=1.2e-32 Score=299.66 Aligned_cols=236 Identities=15% Similarity=0.206 Sum_probs=188.8
Q ss_pred eeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceeccccc-ccCeeEEc-CchhHHHH
Q 008152 284 AYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ-QDDAHIFC-RESQIKDE 361 (576)
Q Consensus 284 g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~-q~da~iF~-~~~~~~~e 361 (576)
-+.|++.......|+| ..-..+|+++|++++++|.+||+|.++ ..||+|+|||+ |+|+|+|+ +++++++|
T Consensus 99 ~l~LRP~~~~~i~~~~-------~~~~~s~r~LP~rl~qig~~fR~E~~~-~rGl~R~REF~qq~d~~~~~~~~~~a~~e 170 (459)
T 1nj8_A 99 KLALRPTSETPIYYMM-------KLWVKVHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAHSTKEEAENQ 170 (459)
T ss_dssp EEEECSSSHHHHHHHH-------HTTCCBTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEESSHHHHHHH
T ss_pred eeEECCCCcHHHHHHH-------HHhhhhcccCCeEEEEEccEecCccCC-CCCceEeeeeeccCcEEEEECCHHHHHHH
Confidence 4556665555555553 112237889999999999999999984 46999999999 99999865 55789999
Q ss_pred HHHHHHHHHHHHHHhCCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCc
Q 008152 362 VRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRK 441 (576)
Q Consensus 362 ~~~~l~~~~~i~~~lG~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~ 441 (576)
+.++++++.++|+.||+++.+.++++++++.|.... ..++..+. .|+.
T Consensus 171 ~~~~i~~~~~~~~~LGl~~~~~~~~~~ek~~ga~~~------------------------------~~ie~~~~--dg~~ 218 (459)
T 1nj8_A 171 VKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYT------------------------------MAFDTIFP--DGRT 218 (459)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEE------------------------------EEEEEECT--TSCE
T ss_pred HHHHHHHHHHHHHHCCCceEEeecCchhhcCCcccc------------------------------eeEEEEcC--CCcE
Confidence 999999999999999999888887655444332211 12333332 3888
Q ss_pred eecceee-ecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEeC-C-C
Q 008152 442 FQCATLQ-LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPV-S-E 514 (576)
Q Consensus 442 ~~~~tiq-ld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~----g~~P~~laP~qV~Vipv-~-~ 514 (576)
++++|++ |+.+++.+||+.|.+.+ |....| |++++|..||++++|+|+++ +.||+|+||+||+|+|+ + +
T Consensus 219 ~e~gt~~~lg~~~s~~~~~~Y~~~~-G~~~~v---~~~~~GigeRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~ 294 (459)
T 1nj8_A 219 MQIATVHNLGQNFSKTFEIIFETPT-GDKDYA---YQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKG 294 (459)
T ss_dssp EEEEEEEEEETHHHHHTTCEEECTT-SSEEEC---EEEEEEECTHHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSS
T ss_pred EEEEEEeecccccccccCeEEECCC-CCEeee---eEeeccHHHHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCC
Confidence 9999997 99888999999998765 543333 55666522999999999875 38999999999999999 6 4
Q ss_pred ---ChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 515 ---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 515 ---~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
+..++|.+|++.|+++ ++|++|+++.++|+||++|++.|+||+|+|||-
T Consensus 295 ~~~~~~~~a~~l~~~Lr~~-i~v~~D~~~~~~g~k~~~a~~~G~p~~iiiG~~ 346 (459)
T 1nj8_A 295 KEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPK 346 (459)
T ss_dssp CHHHHHHHHHHHHHHHHTT-SCEEECCSCSCHHHHHHHHHHTTCSEEEEECHH
T ss_pred cHHHHHHHHHHHHHHHhhh-cEEEEECCCCCHHHHHHHHHHcCCCEEEEECcc
Confidence 5789999999999999 999999999999999999999999999999974
No 12
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.98 E-value=1.5e-32 Score=310.84 Aligned_cols=254 Identities=21% Similarity=0.247 Sum_probs=170.6
Q ss_pred hhhhhh-hhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHH--------------------------
Q 008152 307 KRLKHA-FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIK-------------------------- 359 (576)
Q Consensus 307 ~~L~~s-~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~-------------------------- 359 (576)
+.+..+ |+++|++++|+|.+||+|.+++ .||+|+|||+|+|+|+||.+++..
T Consensus 255 ~r~~~~~~~~LP~~~aqiG~~fRnEisPr-~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~ 333 (693)
T 2zt5_A 255 KRLLEFNQGKLPFAAAQIGNSFRNEISPR-SGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSA 333 (693)
T ss_dssp HHHHHHTTTCSCEEEEEEEEEECCCSSCC-SGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCC
T ss_pred HHHHHHhCcCCCEEEEeecceecCCCCCC-CCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhcccccc
Confidence 444444 7899999999999999998875 999999999999999999987652
Q ss_pred ----------------HHHHHHHHHHHHHHHHhCCe-EEEEEccCC-C-c--------------cCCChHHHHHH---HH
Q 008152 360 ----------------DEVRGVLEFIDYAYRIFGFT-YELKLSTRP-E-K--------------YLGDLATWEKA---EA 403 (576)
Q Consensus 360 ----------------~e~~~~l~~~~~i~~~lG~~-~~l~lstr~-~-~--------------~~G~~~~~~~a---~~ 403 (576)
+++..++.++..+|..||++ ..+++++++ + . ..|..++|..+ ..
T Consensus 334 ~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~ 413 (693)
T 2zt5_A 334 RKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCY 413 (693)
T ss_dssp EEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHH
Confidence 55778999999999999997 556666652 1 1 12333344333 24
Q ss_pred HHHHHHHHcCCCcE---------------EcCCCCcccccceeE---EEeccccCceec--------------ceeeec-
Q 008152 404 ALTEALNEFGKPWQ---------------INEGDGAFYGPKIDI---SVSDALKRKFQC--------------ATLQLD- 450 (576)
Q Consensus 404 ~L~~~l~~~~~~~~---------------~~~g~~afygpkid~---~~~d~~gr~~~~--------------~tiqld- 450 (576)
.|...++..+.++. .++++++| ||+++. .+.|.+++.+++ .++++|
T Consensus 414 dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~vdG 492 (693)
T 2zt5_A 414 DLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI-GKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEG 492 (693)
T ss_dssp HHHHHHHHHTCCCCEEEC--------------------------------------------------------------
T ss_pred HHHHHHHHhccchhhhcccCcccceeeeeecCChHHH-HHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEECC
Confidence 67777777665544 45677777 887763 455666665543 123333
Q ss_pred --ccCCc-eeeeE-EeecCCCcccccEEEEecccccHHHHHHHHHHh-cC----------CCCCCCCCCceEEEEeCCCC
Q 008152 451 --FQLPD-RFNLG-YSAEDEAKTERPVMIHRAILGSVERMFAILLEH-YK----------GKWPFWLSPRQAIVCPVSEK 515 (576)
Q Consensus 451 --~~~~~-rf~l~-y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~-~~----------g~~P~~laP~qV~Vipv~~~ 515 (576)
|+++. ++++. |.....|++.+|.|||++. |++|++++|+|+ +. +.||+|+||+||+|+|++++
T Consensus 493 t~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~--GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~ 570 (693)
T 2zt5_A 493 KTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSF--GLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQN 570 (693)
T ss_dssp -------------------CCEEECCEEEEEEE--EHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEEEESCCS
T ss_pred EEEEecccccceeeEEeccCCcEecCcceeCee--hHHHHHHHHHHHhccccccccccccccCCCCCCCCeEEEEEecCc
Confidence 44432 22322 3233336778999999875 599999999887 32 58999999999999999965
Q ss_pred --hHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 516 --SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 516 --~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
..++|.+|++.||++|++|++|+++.++|+||++|+++|+||+||||+-
T Consensus 571 ~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG~~ 621 (693)
T 2zt5_A 571 QEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFD 621 (693)
T ss_dssp TTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcch
Confidence 8999999999999999999999999999999999999999999999974
No 13
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.97 E-value=1.4e-31 Score=299.17 Aligned_cols=327 Identities=19% Similarity=0.267 Sum_probs=217.5
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+| |+. +....-.++|++.+++.. ..-++...+|.-+-.++|+..+. .... .+ .+|++- |
T Consensus 37 ~G~~-~~l----P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~-~~~~----~~---~m~~~~---d-- 98 (572)
T 2j3l_A 37 AGIY-SYL----PLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGR-YETY----GP---NLYRLK---D-- 98 (572)
T ss_dssp TTEE-EEC----HHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSH-HHHS----CT---TSCEEE---C--
T ss_pred CCee-eeC----CHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCC-cccc----ch---heEEEe---c--
Confidence 6874 663 233455778888888777 77777666665433344433221 0000 00 123321 1
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
. ...-+.|++.......|++ .....+|+++|++++++|.+||+|.+| ..||+|+|
T Consensus 99 ~-----------------~~~~~~LrP~~~~~~~~~~-------~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~Gl~R~R 153 (572)
T 2j3l_A 99 R-----------------NDRDYILGPTHEETFTELI-------RDEINSYKRLPLNLYQIQTKYRDEKRS-RSGLLRGR 153 (572)
T ss_dssp T-----------------TCCEEEECSCCHHHHHHHH-------HHHCCBGGGCCEEEEEEEEEECCCSSC-CTGGGSCS
T ss_pred C-----------------CCCeEEEccccHHHHHHHH-------HhhccChhhcCHhhheecCeeccCcCc-ccCccccc
Confidence 0 0123556655544444443 112237889999999999999999997 58999999
Q ss_pred cccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCccCCCh--------------------------
Q 008152 343 RFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDL-------------------------- 395 (576)
Q Consensus 343 eF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~~~G~~-------------------------- 395 (576)
||+|+|+|+||.+ +++++|+..+++++.++|+.||+++.+.++++. .+|..
T Consensus 154 eF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~~~~~~~~~g--~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~ 231 (572)
T 2j3l_A 154 EFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGG--AMGGKDSKEFMAISEIGEDTICYSTESDYAA 231 (572)
T ss_dssp EEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG--GGTCSSEEEEEEECTTCSEEEEEESSSSCEE
T ss_pred eeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc--cCCCcccEEEEEEcCCCcceEEEeCCCCccc
Confidence 9999999999995 789999999999999999999999988886531 11110
Q ss_pred --------------------------------H------------------------------------HHHHHHHHHHH
Q 008152 396 --------------------------------A------------------------------------TWEKAEAALTE 407 (576)
Q Consensus 396 --------------------------------~------------------------------------~~~~a~~~L~~ 407 (576)
+ .|.++ .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl----~~ 307 (572)
T 2j3l_A 232 NLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKL----KN 307 (572)
T ss_dssp ETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHH----HH
T ss_pred chhhhhcccccccccccccccceecCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHH----HH
Confidence 0 01111 11
Q ss_pred HHHHcCCCcEEcC--------C-CCccccc-----ceeEE---------------------Eecc-ccCcee--------
Q 008152 408 ALNEFGKPWQINE--------G-DGAFYGP-----KIDIS---------------------VSDA-LKRKFQ-------- 443 (576)
Q Consensus 408 ~l~~~~~~~~~~~--------g-~~afygp-----kid~~---------------------~~d~-~gr~~~-------- 443 (576)
+|.. ....... | ...+++| ++.+. +.+. +|+.|+
T Consensus 308 ~l~~--~~l~~a~~~el~~~~g~~~g~~~p~gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~ 385 (572)
T 2j3l_A 308 FLGA--DFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLR 385 (572)
T ss_dssp HHTC--SCEEECCHHHHHHHHSSCTTSCCSTTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCB
T ss_pred hhCC--CccccCCHHHHHHhhCCCccccCCccCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHH
Confidence 1110 0000000 0 0112333 22111 1111 244444
Q ss_pred ----------c-ceeeec--------ccCC----ceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhc----CC
Q 008152 444 ----------C-ATLQLD--------FQLP----DRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHY----KG 496 (576)
Q Consensus 444 ----------~-~tiqld--------~~~~----~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~----~g 496 (576)
| +++++| |+++ ++||+.|.+.+ |....|+|.+.+ + |+||++++|+|++ ++
T Consensus 386 ~~~~G~~~~~~gg~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~~~-g~~~~p~~g~~g-i-GveRli~~l~e~~~d~~g~ 462 (572)
T 2j3l_A 386 FVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDEN-GREKSVIMGCYG-I-GVSRLLSAIVEQNADERGI 462 (572)
T ss_dssp CCCTTCBCTTSSSBEEEEEEEEEEEEEEEETHHHHHHTCEEECTT-SCEEECEEEEEE-E-EHHHHHHHHHHHHEETTEE
T ss_pred HHhcCCcccccCCcceeccceEEEEEeccCcccccccCCEEECCC-CcEEeeeeeccc-c-CHHHHHHHHHHhcCcccCc
Confidence 2 344444 5665 68899998765 656788773222 2 7999999999986 36
Q ss_pred CCCCCCCCceEEEEeCC---CChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 497 KWPFWLSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 497 ~~P~~laP~qV~Vipv~---~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
.||.|++|+||+|+|++ ++..++|.+|++.||++|++|++|+++.++|+||++|++.|+||++|||+-
T Consensus 463 ~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~~~~g~k~~~a~~~g~p~~iivG~~ 533 (572)
T 2j3l_A 463 NWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKK 533 (572)
T ss_dssp CCCTTTSSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHCCSEEEEECGG
T ss_pred ccCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHhHHHHHHHhcCCCEEEEEccc
Confidence 89999999999999998 778899999999999999999999998999999999999999999999873
No 14
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.97 E-value=2.7e-32 Score=299.78 Aligned_cols=242 Identities=19% Similarity=0.105 Sum_probs=188.0
Q ss_pred hhhhhhh-hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 008152 307 KRLKHAF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (576)
Q Consensus 307 ~~L~~s~-relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~l 384 (576)
+....+| +++|++++++|.+||+|.+++ .||+|+|||+|+|+|+||+++++.+|+.++++++.++|++||++ ..+.+
T Consensus 198 ~~~~~sy~r~LP~rl~qig~~FR~E~~pr-~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~ 276 (505)
T 1ati_A 198 KNVLDATSRKLGFGIAQIGKAFRNEITPR-NFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVP 276 (505)
T ss_dssp HHHHHHHTCCSSEEEEEEEEEEBCCSSCC-TGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHhcCCCCCEEEEEeeceeeCCCCCC-CCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4456688 899999999999999998764 89999999999999999999999999999999999999999998 66777
Q ss_pred ccCCC-ccC-CChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEecc-ccCceecceeeecccCCceeeeEE
Q 008152 385 STRPE-KYL-GDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDA-LKRKFQCATLQLDFQLPDRFNLGY 461 (576)
Q Consensus 385 str~~-~~~-G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~-~gr~~~~~tiqld~~~~~rf~l~y 461 (576)
+++++ .+. +..++|+. +++... .|... .|+.+++..+.....+ .|..+ .+.|+|++.+.+|+++|
T Consensus 277 ~~~~~~~~~~~~~~~~d~------E~~~p~--~~~e~--~g~~~~~d~~L~~~~~~~~~~~--~~~~~~~n~~~~~~~~y 344 (505)
T 1ati_A 277 YQQPPESSAHYAKATVDI------LYRFPH--GSLEL--EGIAQRTDFDLGSHTKDQEALG--ITARVLRNEHSTQRLAY 344 (505)
T ss_dssp EECCTTTSCTTCSEEEEE------EEEETT--EEEEE--EEEEECTTHHHHHHCSSTTTTT--CCSCCCCCSCCCSCCCE
T ss_pred CCCChHhhhcccHHHHhH------HhhcCC--CCccc--hhhhcccceecchhhccccccc--eeeeecccccceeEEEE
Confidence 77653 332 55555533 111111 11111 2344555433211111 22222 36678889999999999
Q ss_pred eecCCCcccccEEEEecccccHHHHHHHHHHhc-------CC------CCCCCCCCceEEEEeCCC---ChHHHHHHHHH
Q 008152 462 SAEDEAKTERPVMIHRAILGSVERMFAILLEHY-------KG------KWPFWLSPRQAIVCPVSE---KSQPYALQVRD 525 (576)
Q Consensus 462 ~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~-------~g------~~P~~laP~qV~Vipv~~---~~~~~a~~i~~ 525 (576)
.+.++++..+|++|+.+ + |+||++++|+|++ +| +||+|++|+||+|+|+++ +..++|.+|++
T Consensus 345 ~d~~g~~~y~p~vig~s-~-GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~ 422 (505)
T 1ati_A 345 RDPETGKWFVPYVIEPS-A-GVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKA 422 (505)
T ss_dssp ECSSSCCEECCEEEEEE-E-EHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHH
T ss_pred EcCCCCeeecceEEEEe-e-EHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHH
Confidence 87762333389888865 4 6999999999874 12 599999999999999987 78899999999
Q ss_pred HHHhCC-cEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 526 HIYRAG-YYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 526 ~Lr~~G-i~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
.|+++| ++|++|++ .++|+|||+|+++|+||+||||+-
T Consensus 423 ~Lr~~G~i~v~~D~~-~sig~k~~~ad~~g~p~~iivG~~ 461 (505)
T 1ati_A 423 RLLALGLGRVLYEDT-GNIGKAYRRHDEVGTPFAVTVDYD 461 (505)
T ss_dssp HHHTTCSSCEEECCC-SCHHHHHHHHHHTTCSEEEEECHH
T ss_pred HHhccCCEEEEECCC-CCHHHHHHHHHHCCCCEEEEEChH
Confidence 999999 99999998 899999999999999999999964
No 15
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.97 E-value=5.1e-32 Score=294.86 Aligned_cols=330 Identities=15% Similarity=0.172 Sum_probs=222.4
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeeccc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLC 262 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c 262 (576)
.|+| |+. +....-.++|++.+++.. ..-++...+|.-+-.++|+..+. .... ... +|++- |-
T Consensus 57 ~G~~-d~l----P~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~-~d~~----~~e---m~~~~---d~- 119 (458)
T 2i4l_A 57 AGIY-AWL----PLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGR-YDAY----GPE---MLRIA---DR- 119 (458)
T ss_dssp TTEE-EEC----HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTH-HHHS----CTT---SEEEE---CT-
T ss_pred Ccce-EEC----CCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCC-cccc----ccc---eEEEE---eC-
Confidence 6874 663 234556778888888877 77777776665555555544331 1111 111 24331 10
Q ss_pred CCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecc
Q 008152 263 RGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVR 342 (576)
Q Consensus 263 ~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvr 342 (576)
.| .-+.|+..+.+...-+ -...-.+|+++|++++++|.+||+|.+|+ .||+|+|
T Consensus 120 ~~------------------~~~~LrPt~ee~t~~i-------~r~~~~s~~~lP~rl~~ig~~fR~E~~p~-~Gl~R~R 173 (458)
T 2i4l_A 120 HK------------------RELLYGPTNEEMITEI-------FRAYIKSYKSLPLNLYHIQWKFRDEQRPR-FGVMRGR 173 (458)
T ss_dssp TC------------------CEEEECSCCHHHHHHH-------HHHHCCBGGGCSEEEEEEEEEECCCSSCB-TGGGBCS
T ss_pred CC------------------CeEEECCCChHHHHHH-------HHHHHhhccccCeeeEEecCEeeCCCCCC-CCccccc
Confidence 01 1233443221111111 01123378899999999999999997775 8999999
Q ss_pred cccccCeeEEcCc-hhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC------------ccCCChH----------HHH
Q 008152 343 RFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE------------KYLGDLA----------TWE 399 (576)
Q Consensus 343 eF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~------------~~~G~~~----------~~~ 399 (576)
||+|.|+|+||.+ ++++.|+..+++++.++|++||+++.+.++++.. ...|++. .|+
T Consensus 174 EF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~ 253 (458)
T 2i4l_A 174 EFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVP 253 (458)
T ss_dssp EEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCC
T ss_pred ceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHH
Confidence 9999999999965 6788999889999999999999998888876531 0123221 121
Q ss_pred HHHH----HHHHHHHHcCCCcEE----cCCCCc---ccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCc
Q 008152 400 KAEA----ALTEALNEFGKPWQI----NEGDGA---FYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAK 468 (576)
Q Consensus 400 ~a~~----~L~~~l~~~~~~~~~----~~g~~a---fygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~ 468 (576)
.++. .++++++..+.-... +.|+.+ ++++++.+.--.+.|+.|++++ .++.++|..|.+.+ +
T Consensus 254 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~-----~~s~~~g~ry~~~~--G 326 (458)
T 2i4l_A 254 DENVDYDGDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGT-----KYSDSMKANVTGPD--G 326 (458)
T ss_dssp CTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEET-----HHHHHTTCEEECTT--S
T ss_pred HHhccccHhHHHHHhcCchhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEecc-----cccccCCcEEECCC--C
Confidence 1111 122333222100112 134433 5677666554445677777654 34678888996543 4
Q ss_pred ccccEEEEecccccHHHHHHHHHHhc----CCCCCCCCCCceEEEEeCC---CChHHHHHHHHHHHHhCCcEEEEeCCCC
Q 008152 469 TERPVMIHRAILGSVERMFAILLEHY----KGKWPFWLSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDR 541 (576)
Q Consensus 469 ~~~P~ii~~a~~GgiERlia~L~E~~----~g~~P~~laP~qV~Vipv~---~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~ 541 (576)
+..|+++.+..+ |+||++++|+|++ ++.||.|+||+||+|+|++ ++..++|.+|++.|+++|++|++|+++.
T Consensus 327 ~~~p~~~~gfgi-GveRli~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~ 405 (458)
T 2i4l_A 327 TDAPIHGGSYGV-GVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQ 405 (458)
T ss_dssp CEEECEEEEEEE-EHHHHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEeceEEeeecc-cHHHHHHHHHHhhccccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCC
Confidence 556654333333 6999999999986 4589999999999999996 5678999999999999999999999989
Q ss_pred cHHHHHHHhHhcCCceEEEecce
Q 008152 542 KIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 542 slgkkir~A~~~g~p~~iIiGp~ 564 (576)
++|+||++|+++|+||+||||+-
T Consensus 406 ~~g~k~~~ad~~g~p~~iivG~~ 428 (458)
T 2i4l_A 406 RAGAKFATADLIGIPWQIHVGPR 428 (458)
T ss_dssp CHHHHHHHHHHHTCSEEEEECHH
T ss_pred CHHHHHHHHHhcCCCEEEEECCc
Confidence 99999999999999999999973
No 16
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.97 E-value=2.8e-32 Score=295.49 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=166.2
Q ss_pred cCChhhhhhhhh-cCCeeeeeecccee---ccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCC
Q 008152 303 YPDKKRLKHAFA-ELPLRLADFGVLHR---NEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF 378 (576)
Q Consensus 303 fp~~~~L~~s~r-elpl~l~~vg~l~R---~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~ 378 (576)
|..-+....+|+ +||++++++|.+|| +|.+| ..||+|+|||+|+|+|+||.++++.+++..+++.+..+|..||+
T Consensus 148 ~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~-~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi 226 (454)
T 1g5h_A 148 LEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQT-PSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAM 226 (454)
T ss_dssp HHTHHHHHHHTTTBSCEEEEEEEEEEEEEC----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhhHhhcccCCCEEEEEeeeeccCCcccccC-CCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCC
Confidence 333355566777 99999999999999 69988 59999999999999999999999999999999999999999999
Q ss_pred e-EEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccc--cceeEEEeccccCceecceeeecccCCc
Q 008152 379 T-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYG--PKIDISVSDALKRKFQCATLQLDFQLPD 455 (576)
Q Consensus 379 ~-~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afyg--pkid~~~~d~~gr~~~~~tiqld~~~~~ 455 (576)
+ .+++.++. |+.. +....++.+....|.++++| ++. .+++.+. +.+.
T Consensus 227 ~~~~~r~~~~----------~~~~------a~~~~~ie~~~p~g~~e~~g~~~~t----------d~~l~~~----~~~s 276 (454)
T 1g5h_A 227 SPSNFSSADC----------QDEL------GRKGSKLYYSFPWGKEPIETLWNLG----------DQELLHT----YPGN 276 (454)
T ss_dssp SGGGEEEEEE----------ECTT------SCEEEEEEEEETTEEEEEEEEEEEE----------SHHHHHH----STTC
T ss_pred CceeEEecCC----------HHHH------HhcCCCcEEecCCCceEEEEecCCC----------HHHHHhc----cCCc
Confidence 7 44444321 2211 11122333444444444443 111 1221111 2367
Q ss_pred eeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHh-cC--------C--------CCCCCCCCceEEEE-eCC--CC
Q 008152 456 RFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEH-YK--------G--------KWPFWLSPRQAIVC-PVS--EK 515 (576)
Q Consensus 456 rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~-~~--------g--------~~P~~laP~qV~Vi-pv~--~~ 515 (576)
+|++.|.+. +...+|+|||++ +|+||++++++|+ +. | +||+|+||+||+|+ |++ ++
T Consensus 277 ~~~l~y~d~--~~~~~P~vi~~s--~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~ 352 (454)
T 1g5h_A 277 VSTIQGRDG--RKNVVPCVLSVS--GDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVE 352 (454)
T ss_dssp GGGSCEEET--TEEECCEEEEEE--EEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHH
T ss_pred eeeEEEECC--CCcEeeEEEeCc--ccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHH
Confidence 899999873 457789999986 4899997555554 43 4 89999999999999 887 67
Q ss_pred hHHHHHHHHHHHHhCCcEEE--EeCC-CCcHHHHHHHhHhcCCceEEEecce
Q 008152 516 SQPYALQVRDHIYRAGYYVD--VDTT-DRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 516 ~~~~a~~i~~~Lr~~Gi~v~--vD~~-~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
..++|.+|++.|+++|++|+ +|++ +.++|+|||+|++.|+||+||||+-
T Consensus 353 ~~~~A~~l~~~Lr~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~ 404 (454)
T 1g5h_A 353 LRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTET 404 (454)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcc
Confidence 89999999999999999996 9997 8999999999999999999999973
No 17
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=287.55 Aligned_cols=223 Identities=12% Similarity=0.036 Sum_probs=162.7
Q ss_pred hhhhhhhh-cCCeeeeeeccceeccc--cCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEE
Q 008152 307 KRLKHAFA-ELPLRLADFGVLHRNEA--SGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YEL 382 (576)
Q Consensus 307 ~~L~~s~r-elpl~l~~vg~l~R~e~--~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l 382 (576)
+....+|+ +||++++++|.+||+|. ++...||+|+|||+|+|+|+||.+++..+|+..+++....+|+.||++ ..+
T Consensus 162 k~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~~~~ 241 (459)
T 3ikl_A 162 VNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNF 241 (459)
T ss_dssp TTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSGGGE
T ss_pred hhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCChhhE
Confidence 44556888 99999999999999996 466689999999999999999999999999999999999999999996 333
Q ss_pred EEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccC---Cceeee
Q 008152 383 KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQL---PDRFNL 459 (576)
Q Consensus 383 ~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~---~~rf~l 459 (576)
++++.+.. . +++..++.+..+.|.++++|+ +. ..||++ ..++++
T Consensus 242 r~~~~~~e----e------------A~~~~DiE~~~p~G~~E~~g~-------------sn----~tDfqL~~~~~~~~~ 288 (459)
T 3ikl_A 242 SSSDCQDE----E------------GRKGNKLYYNFPWGKELIETL-------------WN----LGDHELLHMYPGNVS 288 (459)
T ss_dssp EEEEECCS----S------------SSCEEEEEEECSSCEEEEEEE-------------EE----EETHHHHHHSCSCSS
T ss_pred EEeecCch----H------------HHhhcCeEEEcCCceEEEeee-------------ec----cchhhhhccccccCc
Confidence 34332211 0 111222233333333344443 00 123332 235556
Q ss_pred EEeecCCCcccccEEEEecccccHHHHHHHHHHh-cC----------------CCCCCCCCCceEEEEeCC---CChHHH
Q 008152 460 GYSAEDEAKTERPVMIHRAILGSVERMFAILLEH-YK----------------GKWPFWLSPRQAIVCPVS---EKSQPY 519 (576)
Q Consensus 460 ~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~-~~----------------g~~P~~laP~qV~Vipv~---~~~~~~ 519 (576)
.|.+.+++.+.+|+||+.+ +|++|++++++|+ |. ++||+||||+||+|++.. +++.++
T Consensus 289 ~~~~~dg~~k~~P~vi~~s--~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e~~~~~ 366 (459)
T 3ikl_A 289 KLHGRDGRKNVVPCVLSVN--GDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQV 366 (459)
T ss_dssp SSCCBSSSCBCCCEEEEEE--EEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCSTTHHHH
T ss_pred eeEccCCCeeeeeEEEEec--ccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCHHHHHH
Confidence 6665553356789999754 3799987666665 43 589999999999999442 678999
Q ss_pred HHHHHHHHHhCCcEEE--EeCC-CCcHHHHHHHhHhcCCceEEEecce
Q 008152 520 ALQVRDHIYRAGYYVD--VDTT-DRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 520 a~~i~~~Lr~~Gi~v~--vD~~-~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|.+|++.|+++||+|+ +|++ +.++|+|||+||++|+||+||||+-
T Consensus 367 A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK~r~Ad~iGiPy~IiVG~k 414 (459)
T 3ikl_A 367 CQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTET 414 (459)
T ss_dssp HHHHHHHHHHTSCCEECGGGSSSCCTTHHHHHHHGGGTCSEEEEECTT
T ss_pred HHHHHHHHHHCCCeEEEeecCCcCCCHHHHHHHHHHcCCCEEEEECch
Confidence 9999999999999999 8888 8999999999999999999999974
No 18
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.96 E-value=4.7e-29 Score=271.93 Aligned_cols=228 Identities=17% Similarity=0.204 Sum_probs=185.7
Q ss_pred cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC----
Q 008152 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE---- 389 (576)
Q Consensus 315 elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~---- 389 (576)
++|+|++++|.+||+|+++. | |+|||+|+|+|+||.+++..+ ++++.++.++|+.||++ +.+.+|+++.
T Consensus 128 ~lP~r~~~~g~vfR~E~~~~--g--R~ReF~Q~d~ei~g~~~~~ad--aEvi~l~~~~l~~lGl~~~~i~in~~g~~~~~ 201 (467)
T 4e51_A 128 DGPKRLWYIGPMFRHERPQR--G--RYRQFHQVGVEALGFAGPDAD--AEIVMMCQRLWEDLGLTGIKLEINSLGLAEER 201 (467)
T ss_dssp TSCEEEEEEEEEECCCCC-------CCSEEEEEEEEEETCCCSHHH--HHHHHHHHHHHHHHTCCCEEEEEEECCCHHHH
T ss_pred CCCEEEEEEccEEccCCCCC--C--CcCceEEEEEEEEeCCChHHH--HHHHHHHHHHHHHcCCCceEEEEeCCCchhhh
Confidence 58999999999999998663 4 999999999999999988766 78999999999999996 9999998641
Q ss_pred --------ccCCC----------------------------hHHHH--------------HHHHHHHHHHHHcCCCcEEc
Q 008152 390 --------KYLGD----------------------------LATWE--------------KAEAALTEALNEFGKPWQIN 419 (576)
Q Consensus 390 --------~~~G~----------------------------~~~~~--------------~a~~~L~~~l~~~~~~~~~~ 419 (576)
++++. .+.|. ...+.|.++|+.+|++|.++
T Consensus 202 ~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~~l~~~L~~~gi~~~~d 281 (467)
T 4e51_A 202 AAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKANNVPFTIN 281 (467)
T ss_dssp HHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHcCCeEEEc
Confidence 11100 00111 12356778888999999999
Q ss_pred CC---CCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCC
Q 008152 420 EG---DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKG 496 (576)
Q Consensus 420 ~g---~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g 496 (576)
++ +.+||++++...+.+.+|+. ++++ .++|||. +.... |++.+|.+ +..+|+||++++|.++ |
T Consensus 282 ~~lvRgl~YYtg~vFe~~~~~~g~~---~tI~----~GGRYD~-Lv~~~-g~~~~Pav---Gfa~gleRl~~~l~~~--~ 347 (467)
T 4e51_A 282 PRLVRGLDYYNLTVFEWVTDKLGAQ---GTVA----AGGRYDP-LIEQL-GGKPTAAC---GWAMGIERILELLKEE--H 347 (467)
T ss_dssp TTCCCSCTTCCSEEEEEEECC-------CEEE----EEEECTH-HHHHT-TSSCCCEE---EEEEEHHHHHHHHHHT--T
T ss_pred CccccCccccCCeEEEEEECCCCCc---ceec----CCCcHHH-HHHHh-CCCCCCce---eehHHHHHHHHHHHhc--C
Confidence 98 67899999888888888764 5664 6889987 55444 56778987 4456899999999885 5
Q ss_pred CCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCC----CCcHHHHHHHhHhcCCceEEEecc
Q 008152 497 KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT----DRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 497 ~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~----~~slgkkir~A~~~g~p~~iIiGp 563 (576)
.+|. ++|.||+|+|++++..++|.+++++||++|++|++|.+ +.++++||++|++.|+||++|+|+
T Consensus 348 ~~~~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~ 417 (467)
T 4e51_A 348 LVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGE 417 (467)
T ss_dssp CCCC-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred Cccc-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECc
Confidence 6776 79999999999988899999999999999999999998 899999999999999999999997
No 19
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.95 E-value=4.3e-28 Score=260.93 Aligned_cols=231 Identities=19% Similarity=0.220 Sum_probs=177.3
Q ss_pred hh-hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC-
Q 008152 312 AF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP- 388 (576)
Q Consensus 312 s~-relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~- 388 (576)
+| +++|++++++|.+||+|+.+. .|+|||+|.|+|+||.+++..+ .+++.++.++|+.||++ +.+.+++..
T Consensus 95 ~~~~~lP~r~~~~g~vfR~E~~~~----gR~reF~q~~~e~~~~~~~~~d--~e~i~~~~~~l~~lgl~~~~i~l~~~g~ 168 (420)
T 1qe0_A 95 QGNPNQPIKLYYNGPMFRYERKQK----GRYRQFNQFGVEAIGAENPSVD--AEVLAMVMHIYQSFGLKHLKLVINSVGD 168 (420)
T ss_dssp GGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHH--HHHHHHHHHHHHHTTCCCEEEEEEECCC
T ss_pred cccCCCCeEEEEecCEeecCCCcC----CCcccEEEeeEEEECCCCchhH--HHHHHHHHHHHHHcCCCceEEEEcccCc
Confidence 56 789999999999999996553 3999999999999999988666 78999999999999998 999998632
Q ss_pred -----------CccCC----------------------------ChHHHHHH--------------HHHHHHHHHHcCCC
Q 008152 389 -----------EKYLG----------------------------DLATWEKA--------------EAALTEALNEFGKP 415 (576)
Q Consensus 389 -----------~~~~G----------------------------~~~~~~~a--------------~~~L~~~l~~~~~~ 415 (576)
+++++ +.+.|+.+ .+.|.++|+..|++
T Consensus 169 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~~l~~l~~~l~~~gi~ 248 (420)
T 1qe0_A 169 MASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIP 248 (420)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHcCCe
Confidence 01111 11223321 14667777788888
Q ss_pred cEEcCC---CCcccccce-eEEEeccc---cCceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHH
Q 008152 416 WQINEG---DGAFYGPKI-DISVSDAL---KRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFA 488 (576)
Q Consensus 416 ~~~~~g---~~afygpki-d~~~~d~~---gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia 488 (576)
+.++++ ..+||.+.+ ++ +.+.. |+. +++ ..++|||. +.... |++.+|.| +.+ +|+||+++
T Consensus 249 ~~~d~~l~rg~~yYtg~vfe~-~~~~~~~~g~~---~~i----~~GgRYd~-l~~~~-g~~~~P~v-g~~--igveRl~~ 315 (420)
T 1qe0_A 249 YTEDPNLVRGLDYYTHTAFEL-MMDNPNYDGAI---TTL----CGGGRYNG-LLELL-DGPSETGI-GFA--LSIERLLL 315 (420)
T ss_dssp CEECTTCCCCCTTEEEEEEEE-EEECTTSTTSE---EEE----EEEEEEES-HHHHT-TCCCCEEE-EEE--EEHHHHHH
T ss_pred EEECcccccchhhhcCeEEEE-EEcCCCCCCCc---Ccc----ccCccHHH-HHHHh-CCCCCCEE-EEE--ecHHHHHH
Confidence 999998 457886654 55 45555 542 344 36789986 44444 55678985 444 38999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 489 ILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 489 ~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
+| |++++.||. ++|.||+|+|++++..++|.++++.||++|++|++|+++.++|+|+++|++.|+||++|+|+
T Consensus 316 ~l-e~~~~~~p~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~~iiig~ 388 (420)
T 1qe0_A 316 AL-EEEGIELDI-EENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGD 388 (420)
T ss_dssp HH-HHTTCCCCC-CCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred HH-HhcCCCCCC-CCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEECc
Confidence 87 777778998 89999999999888889999999999999999999998899999999999999999999986
No 20
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.94 E-value=6.1e-27 Score=219.00 Aligned_cols=128 Identities=18% Similarity=0.262 Sum_probs=113.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhC--CeEEecCccccCC-ceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeC
Q 008152 149 EGRDTFWHSSAHILGQAIEQQYG--CKLCIGPCTTRGE-GFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVT 223 (576)
Q Consensus 149 eG~~vy~hS~ahlL~~A~~~~fg--~~l~ig~si~~~~-Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs 223 (576)
+|.+++|||++|||++|++++|| ++++++++++ + |+||||++ +.++|++|+++||++|+++| |+||++.+++
T Consensus 2 ~g~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~--~~~~~~~~d~-~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~ 78 (157)
T 1v4p_A 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVK--GNKGVLIVKF-DRKPSDEEIREIERLANEKVKENAPIKIYELP 78 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEE--TTEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEE
T ss_pred cchHHHhHHHHHHHHHHHHHHhCCCcEEecCceec--CCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 68999999999999999999998 6788899987 5 89999987 46899999999999999999 9999999999
Q ss_pred HHHHHHhhccCcchhhhcccCCCC-CcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeec
Q 008152 224 RDQALEMFSDNNFKVEIINDLPAD-KTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKAS 282 (576)
Q Consensus 224 ~eeA~~lF~~~~~K~~Ll~~~~~~-~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~ 282 (576)
++||.++|+++.++.+.+ |++ +.|++|+||+| +|+|+||||||||+|+.|+|+++.
T Consensus 79 ~~eA~~~f~~~~~~~~~~---~~~~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~ 136 (157)
T 1v4p_A 79 REEAEKMFGEDMYDLFPV---PEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVR 136 (157)
T ss_dssp HHHHHHHHGGGGSCSSCC---CTTCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEE
T ss_pred HHHHHHhhCccccccccC---CCCCCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEE
Confidence 999999998765544322 222 57999999999 999999999999999999999653
No 21
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.91 E-value=2.8e-24 Score=231.38 Aligned_cols=323 Identities=19% Similarity=0.168 Sum_probs=208.6
Q ss_pred CceEEEEEcCCCCCCHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccC-cchhhhcccCCCCCcEEEEEeCCeecc
Q 008152 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDN-NFKVEIINDLPADKTITVYRCGPLVDL 261 (576)
Q Consensus 184 ~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~-~~K~~Ll~~~~~~~~v~vy~~g~~~D~ 261 (576)
.|++ |+. +....-.++|++.++++. ..-++...+|.-+-.++|... |...+.. .=.+|++ .|-
T Consensus 7 ~G~~-d~l----P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~-------~~em~~~---~D~ 71 (421)
T 1h4v_B 7 RGTK-DLF----GKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIV-------RKEMFTF---QDR 71 (421)
T ss_pred CCCC-CcC----HHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCccccc-------ccceEEE---ECC
Confidence 5763 553 234556788888888888 888888888877767776542 2100000 0124442 221
Q ss_pred cCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceec
Q 008152 262 CRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRV 341 (576)
Q Consensus 262 c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRv 341 (576)
+ ..-+.|++.......|.+... ..+++++|++++++|.+||+|+++ .| |.
T Consensus 72 --~-----------------g~~l~Lrpd~t~~~ar~~~~~-------~~~~~~lP~rl~~~g~vfR~e~p~--~g--R~ 121 (421)
T 1h4v_B 72 --G-----------------GRSLTLRPEGTAAMVRAYLEH-------GMKVWPQPVRLWMAGPMFRAERPQ--KG--RY 121 (421)
T ss_pred --C-----------------CCEEeeCCcchHHHHHHHHhc-------cccccCCCeEEEEecCeecCCCCC--CC--Cc
Confidence 0 112335544444444443100 113468999999999999999654 34 99
Q ss_pred ccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCccCCChHHHHHHHHHHHHHHHHc--CC----
Q 008152 342 RRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEF--GK---- 414 (576)
Q Consensus 342 reF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~--~~---- 414 (576)
|||+|+|+|+||.+++..+ ++++.++.++|++||++ +.+.+++ +|+.+++..+.+.|.+++... ++
T Consensus 122 REf~Q~g~e~~g~~~~~ad--~e~i~~~~~~l~~lgl~~~~i~i~~-----~g~~~~~~~~~~~l~~~l~~~~~~l~~~~ 194 (421)
T 1h4v_B 122 RQFHQVNYEALGSENPILD--AEAVVLLYECLKELGLRRLKVKLSS-----VGDPEDRARYNAYLREVLSPHREALSEDS 194 (421)
T ss_pred ccEEEccEEEECCCChhhh--HHHHHHHHHHHHHcCCCceEEEEcC-----CCchhhHHHHHHHHHHHHHHHHhhcCHHH
Confidence 9999999999999877554 57899999999999998 9999975 455555444444444333221 00
Q ss_pred -------CcE----EcCCCCccc----ccceeEEEec-c---ccCcee----c-ceeeecccCCceee----eE---Eee
Q 008152 415 -------PWQ----INEGDGAFY----GPKIDISVSD-A---LKRKFQ----C-ATLQLDFQLPDRFN----LG---YSA 463 (576)
Q Consensus 415 -------~~~----~~~g~~afy----gpkid~~~~d-~---~gr~~~----~-~tiqld~~~~~rf~----l~---y~~ 463 (576)
++. .+++..+++ +|++...+.+ + +++-++ . .++++|+.++..+| +. |..
T Consensus 195 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~ 274 (421)
T 1h4v_B 195 KERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHE 274 (421)
T ss_pred HHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEecccccchhhhcCeEEEEEec
Confidence 000 011112333 4554432211 1 111111 0 25667776665443 11 111
Q ss_pred cCC------------------CcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHH
Q 008152 464 EDE------------------AKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRD 525 (576)
Q Consensus 464 ~~~------------------g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~ 525 (576)
..+ |++.+|.+ +.+ + |+||++++|.|+ |.+|+|.+|.||+|+|++++..++|.++++
T Consensus 275 ~~g~~~~v~~GGRYd~l~~~fgg~~~pa~-Gf~-i-gieRl~~~l~e~--~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~ 349 (421)
T 1h4v_B 275 EIGAQSALGGGGRYDGLSELLGGPRVPGV-GFA-F-GVERVALALEAE--GFGLPEEKGPDLYLIPLTEEAVAEAFYLAE 349 (421)
T ss_pred CCCCcCccccCCcHHHHHHHhCCCCCCeE-EEe-e-cHHHHHHHHHhc--CcCCCCCCCCeEEEEECChHHHHHHHHHHH
Confidence 100 12456764 433 2 799999999986 566667899999999999888999999999
Q ss_pred HHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 526 HIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 526 ~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
+||++ ++|++|+++.++|+|+++|++.|+||++|+|+-
T Consensus 350 ~Lr~~-i~v~~d~~~~~~~~~~~~a~~~g~p~~iivG~~ 387 (421)
T 1h4v_B 350 ALRPR-LRAEYALAPRKPAKGLEEALKRGAAFAGFLGED 387 (421)
T ss_pred HHHhc-CEEEEecCCCCHHHHHHHHHhCCCCEEEEECch
Confidence 99999 999999998999999999999999999999974
No 22
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.91 E-value=4.7e-24 Score=229.73 Aligned_cols=313 Identities=13% Similarity=0.150 Sum_probs=188.2
Q ss_pred CHhHHHHHHHHHHHHh-cCCEEEEEeCHHHHHHhhccC-cchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCccc
Q 008152 198 NPDHFKSIDSEADKAA-KQPFERIEVTRDQALEMFSDN-NFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG 275 (576)
Q Consensus 198 t~edl~~Ie~~m~~iI-~~pi~r~~vs~eeA~~lF~~~-~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~ 275 (576)
...-.++|++.++++. ..-++...+|.-|-.++|... |...+.... .+|++ .|- +
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~-------em~~~---~D~--~----------- 73 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEK-------EMYTF---EDR--N----------- 73 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHH-------TCEEE---ECT--T-----------
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhh-------heEEE---EcC--C-----------
Confidence 3445677888888777 777777777655444555431 110000000 12332 221 0
Q ss_pred EEEEeecceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCc
Q 008152 276 FGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (576)
Q Consensus 276 f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~ 355 (576)
..-+-|++.....+.|.+. -..+|+++|++++++|.+||+|+++ .| |.|||+|+|+|+||.+
T Consensus 74 ------g~~l~Lrpd~t~~~aR~~~--------~~~~~~~~P~rl~~~g~vfR~e~p~--~g--R~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 74 ------GDSLTLRPEGTAGCVRAGI--------EHGLLYNQEQRLWYIGPMFRHERPQ--KG--RYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp ------SCEEEECSCSHHHHHHHHH--------HHTCSTTCCEEEEEEEEEECCCCCC--SS--CCSEEEEEEEEEESCC
T ss_pred ------CCEEEeCCCchHHHHHHHH--------hcccccCCCeEEEEEcCEecCCCCC--CC--ccceeEEeeEEEECCC
Confidence 1123355433334444431 0123578999999999999999654 44 9999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCC-e-EEEEEccCCCccCCChHHHHHHHHHHHHHHHH------------cC-CCcE---
Q 008152 356 SQIKDEVRGVLEFIDYAYRIFGF-T-YELKLSTRPEKYLGDLATWEKAEAALTEALNE------------FG-KPWQ--- 417 (576)
Q Consensus 356 ~~~~~e~~~~l~~~~~i~~~lG~-~-~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~------------~~-~~~~--- 417 (576)
++..+ ++++.++.++|++||+ + +.+.+++. |..++...+.+.|.+++.. +. .++.
T Consensus 136 ~~~ad--~e~i~~~~~~l~~lgl~~~~~i~i~~~-----g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~ 208 (423)
T 1htt_A 136 GPDID--AELIMLTARWWRALGISEHVTLELNSI-----GSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLD 208 (423)
T ss_dssp SHHHH--HHHHHHHHHHHHHHTCGGGCEEEEEEC-----CCHHHHHHC--------------------------------
T ss_pred Cchhh--HHHHHHHHHHHHHCCCCCCcEEEEcCC-----CChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhh
Confidence 77544 5688999999999999 5 99999863 4444333222222222211 00 0000
Q ss_pred -EcCCCCccc--ccceeEEEec-cccC---cee-----cceeeecccCCceee----eEE---eecCC------------
Q 008152 418 -INEGDGAFY--GPKIDISVSD-ALKR---KFQ-----CATLQLDFQLPDRFN----LGY---SAEDE------------ 466 (576)
Q Consensus 418 -~~~g~~afy--gpkid~~~~d-~~gr---~~~-----~~tiqld~~~~~rf~----l~y---~~~~~------------ 466 (576)
.+++..+++ +|++...+.. +..+ -++ ..++++|+.+...++ +.| ....+
T Consensus 209 ~~~~~~~~~l~~~~~l~~~l~~~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD 288 (423)
T 1htt_A 209 SKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYD 288 (423)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECT
T ss_pred cccHHHHHHHhcchHHHhhhhHHHHHHHHHHHHHHHHcCCeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHH
Confidence 012233454 6766543321 1111 111 025667776655433 111 11100
Q ss_pred ------CcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhC--CcEEEEeC
Q 008152 467 ------AKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRA--GYYVDVDT 538 (576)
Q Consensus 467 ------g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~--Gi~v~vD~ 538 (576)
|++.+|.+ +.+ + |+||++++|.|+ |.+|+|.+|.||+|+|++++..++|.+++++||++ |++|++|+
T Consensus 289 ~l~~~fgg~~~pav-Gf~-i-gveRl~~~l~e~--~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~ 363 (423)
T 1htt_A 289 GLVEQLGGRATPAV-GFA-M-GLERLVLLVQAV--NPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNH 363 (423)
T ss_dssp THHHHTTSCCCCEE-EEE-E-EHHHHHHHHHHH--STTCCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECC
T ss_pred HHHHHhCCCCCCeE-EEE-e-cHHHHHHHHHhc--CcCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeC
Confidence 12346764 433 2 799999999996 55666789999999999988999999999999999 99999999
Q ss_pred CCCcHHHHHHHhHhcCCceEEEecc
Q 008152 539 TDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 539 ~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
++.++|+|+++|++.|+||++|+|+
T Consensus 364 ~~~~~~~~~~~a~~~g~p~~iiiG~ 388 (423)
T 1htt_A 364 GGGNFKKQFARADKWGARVAVVLGE 388 (423)
T ss_dssp SCCCHHHHHHHHHHHTCSEEEEECH
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECc
Confidence 9899999999999999999999997
No 23
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.91 E-value=6.2e-25 Score=237.48 Aligned_cols=230 Identities=16% Similarity=0.218 Sum_probs=164.1
Q ss_pred cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe--EEEEEccCC--Cc
Q 008152 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT--YELKLSTRP--EK 390 (576)
Q Consensus 315 elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~--~~l~lstr~--~~ 390 (576)
++|++++++|.+||+|+++ .| |.|||+|+|+|+||.+++..+ ++++.++.++|++||++ +.+.++++. .+
T Consensus 97 ~lP~rl~~~g~vfR~erp~--~g--R~REF~Q~d~ei~g~~~~~ad--~E~i~~~~~~l~~lgl~~~~~i~l~~~g~~~~ 170 (434)
T 1wu7_A 97 QRPLRWYSFPKVWRYEEPQ--AG--RYREHYQFNADIFGSDSPEAD--AEVIALASSILDRLGLQDIYEIRINSRKIMEE 170 (434)
T ss_dssp CSSEEEEECCEEECCCCSC--SS--CCSEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHTTTTTSEEEEEEEHHHHHH
T ss_pred CCCeEEEEEcCeecCCCCC--CC--CccceEEeeEEEEcCCChHhh--HHHHHHHHHHHHHcCCCCceEEEECChhhHHH
Confidence 5899999999999999654 44 999999999999999977554 57899999999999997 999999862 11
Q ss_pred ---cCCChHHHHHHHHHHHHHH---------------HHcCCCcEEcCCCCccc--ccceeEEEe-------ccccCcee
Q 008152 391 ---YLGDLATWEKAEAALTEAL---------------NEFGKPWQINEGDGAFY--GPKIDISVS-------DALKRKFQ 443 (576)
Q Consensus 391 ---~~G~~~~~~~a~~~L~~~l---------------~~~~~~~~~~~g~~afy--gpkid~~~~-------d~~gr~~~ 443 (576)
.+| ++.|. .+.+++ ...+++...+++..+|+ +|+++. +. +++.+-++
T Consensus 171 ~~~~~g-~~~~~----~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~l~~ 244 (434)
T 1wu7_A 171 IIGGMT-SSDPF----SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDE-MARITGKSSEEIARMAA 244 (434)
T ss_dssp HHHTTC-SSCHH----HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHH-HHHHTTCCCHHHHHHHH
T ss_pred HHHHhC-cHhHH----HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHH-HHHHHhhHHHHHHHHHH
Confidence 233 33332 223333 23333322222223454 566543 31 22222111
Q ss_pred c---------ceeeecccCCceee----eEE--eecC-C-----------------CcccccEEEEecccccHHHHHHHH
Q 008152 444 C---------ATLQLDFQLPDRFN----LGY--SAED-E-----------------AKTERPVMIHRAILGSVERMFAIL 490 (576)
Q Consensus 444 ~---------~tiqld~~~~~rf~----l~y--~~~~-~-----------------g~~~~P~ii~~a~~GgiERlia~L 490 (576)
+ .++++|+.++..+| +.| ...+ . |++.+|.+ +.++ |+||++++|
T Consensus 245 ~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~-Gf~i--gveRl~~~l 321 (434)
T 1wu7_A 245 VEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAV-GFGM--GDAVISLLL 321 (434)
T ss_dssp HHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEE-EEEE--EHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeE-EEEE--cHHHHHHHH
Confidence 1 14777776665443 111 0111 0 02346754 5442 799999999
Q ss_pred HHhcCCCC-CCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecc
Q 008152 491 LEHYKGKW-PFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 491 ~E~~~g~~-P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp 563 (576)
.|+ |.| |. +|.||+|+|++++..++|.+++++||++|++|++|+++.++|+|+++|++.|+||++|+|+
T Consensus 322 ~e~--~~~~p~--~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~~~~iiiG~ 391 (434)
T 1wu7_A 322 KRE--NVQIPR--EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGE 391 (434)
T ss_dssp HHT--TCCCCC--SSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred Hhc--CCccCC--CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCCCEEEEECc
Confidence 986 688 87 8999999999988999999999999999999999999899999999999999999999997
No 24
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.89 E-value=1.7e-22 Score=220.25 Aligned_cols=251 Identities=18% Similarity=0.192 Sum_probs=163.4
Q ss_pred eecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHH--HHH
Q 008152 285 YWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIK--DEV 362 (576)
Q Consensus 285 ~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~--~e~ 362 (576)
+-|++....+..|++.. ...+.++|+|++++|++||+|+.+ .| |.|||+|.|+|+||.++... |
T Consensus 96 l~LRpd~T~~~aR~~~~--------~~~~~~~p~r~~y~g~vfR~e~~~--~g--r~Ref~Q~g~ei~G~~~~~a~~D-- 161 (465)
T 3net_A 96 RALKFDQTVPLAAYIAR--------HLNDLTFPFARYQMDVVFRGERAK--DG--RFRQFRQCDIDVVGREKLSLLYD-- 161 (465)
T ss_dssp EEECSCSHHHHHHHHHH--------HGGGSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHH--
T ss_pred EEeCCCChHHHHHHHHh--------cccccCCCeEEEEeccEEecCCCC--CC--CcceeEEeeEEEECCCCccchhh--
Confidence 34555555555565411 112457899999999999999764 34 99999999999999987655 5
Q ss_pred HHHHHHHHHHHHHhCCe-EEEEEccCCC-----ccCCChHHHHHHH------------HHHHHHHHHcCC----------
Q 008152 363 RGVLEFIDYAYRIFGFT-YELKLSTRPE-----KYLGDLATWEKAE------------AALTEALNEFGK---------- 414 (576)
Q Consensus 363 ~~~l~~~~~i~~~lG~~-~~l~lstr~~-----~~~G~~~~~~~a~------------~~L~~~l~~~~~---------- 414 (576)
+|++.++.++++.||++ +.+.+|++.- ..+|.++.|.... ..+++.|...|+
T Consensus 162 aEvi~l~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 241 (465)
T 3net_A 162 AQMPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIID 241 (465)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 68999999999999997 9999997531 1234333221100 001111111121
Q ss_pred ----------------------------------------------C----cEEcCCC--C-ccc-ccceeEEEeccccC
Q 008152 415 ----------------------------------------------P----WQINEGD--G-AFY-GPKIDISVSDALKR 440 (576)
Q Consensus 415 ----------------------------------------------~----~~~~~g~--~-afy-gpkid~~~~d~~gr 440 (576)
+ +.++++. | .|| |..++++..+ .|.
T Consensus 242 l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~-~~~ 320 (465)
T 3net_A 242 FVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIG-HEA 320 (465)
T ss_dssp HHTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHTTCCGGGEEECTTCCCCSSSEEEEEEEEEETT-CGG
T ss_pred HHHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHhcccccCceEEEccCccCCCcccCceEEEEEECC-CCc
Confidence 2 3333321 1 123 3333322211 000
Q ss_pred ceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCC-CCCCceEEEEeCCCChHHH
Q 008152 441 KFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPF-WLSPRQAIVCPVSEKSQPY 519 (576)
Q Consensus 441 ~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~-~laP~qV~Vipv~~~~~~~ 519 (576)
. +++ -.++|||-....=. |+. .|.+ +.++ |+||++++|.|+ |.||. |.+|.||+|+|++++..++
T Consensus 321 ~---~~i----~~GGRYD~L~~~f~-g~~-~pav-Gfai--GieRli~~L~e~--g~~p~~~~~p~~V~Vi~~~~~~~~~ 386 (465)
T 3net_A 321 L---GSI----CSGGRYEELVGTFI-GEK-MPGV-GISI--GLTRLISRLLKA--GILNTLPPTPAQVVVVNMQDELMPT 386 (465)
T ss_dssp G---CCS----SEEEEESSSSGGGT-CSC-CCEE-EEEE--EHHHHHHHHHHT--TSSCCCCSCSCCEEECCSCGGGHHH
T ss_pred c---cee----cccccHHHHhhhhc-CCC-Ccee-eeec--cHHHHHHHHHHc--CCCCCcCCCCCeEEEEEcCHHHHHH
Confidence 0 011 12334431110001 222 5765 4443 799999999996 77997 8999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152 520 ALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM 564 (576)
Q Consensus 520 a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~ 564 (576)
|.+++++||++|++|++|+++.++++|+++|++.|+||++|+|+-
T Consensus 387 A~~la~~LR~~Gi~ve~d~~~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 387 YLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp HHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCEEEEECch
Confidence 999999999999999999999999999999999999999999975
No 25
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=215.30 Aligned_cols=241 Identities=15% Similarity=0.181 Sum_probs=153.6
Q ss_pred hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC-
Q 008152 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE- 389 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~- 389 (576)
+++.+|++++++|.+||+|+.+...| |.|||+|+|+|+||+.++...+ ++++.++.++|+.||++ +.+.+|++.-
T Consensus 152 ~~~~~p~k~yyig~vfR~Erp~~~~G--R~ReF~Q~g~ei~G~~~~~~aD-aEvi~l~~~~l~~lgl~~~~i~in~~~~l 228 (517)
T 4g85_A 152 MNKLTNIKRYHIAKVYRRDNPAMTRG--RYREFYQCDFDIAGNFDPMIPD-AECLKIMCEILSSLQIGDFLVKVNDRRIL 228 (517)
T ss_dssp HTTCSCEEEEEEEEEECCCC---------CCEEEEEEEEEESCCCTTHHH-HHHHHHHHHHHHHHCCCCEEEEEEEHHHH
T ss_pred hCCCCCceeEEEeceEeccCcccccC--ccceeeeeceeccCCccchHHH-HHHHHHHHHHHHhhcCCcccccccchhhH
Confidence 34567999999999999997654456 9999999999999988765433 57999999999999997 9999987420
Q ss_pred ----ccCCChHH----------------HHHHH-----------------------------------------------
Q 008152 390 ----KYLGDLAT----------------WEKAE----------------------------------------------- 402 (576)
Q Consensus 390 ----~~~G~~~~----------------~~~a~----------------------------------------------- 402 (576)
.+.|..+. |+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 308 (517)
T 4g85_A 229 DGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALE 308 (517)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTCHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHH
Confidence 00111000 00000
Q ss_pred -----HHHHHHHHHcCC--CcEEcCCC--C-ccc-ccceeEEEeccccC-----ceecceeeecccCCceeeeEEeecCC
Q 008152 403 -----AALTEALNEFGK--PWQINEGD--G-AFY-GPKIDISVSDALKR-----KFQCATLQLDFQLPDRFNLGYSAEDE 466 (576)
Q Consensus 403 -----~~L~~~l~~~~~--~~~~~~g~--~-afy-gpkid~~~~d~~gr-----~~~~~tiqld~~~~~rf~l~y~~~~~ 466 (576)
..+.++|+.+|. ++.++++. | .|| |..+++...+ .+. ....+++ -.++|||-....=+.
T Consensus 309 ~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~-~~~~~~~~~~~~~~i----~~GGRYD~Lv~~f~~ 383 (517)
T 4g85_A 309 GLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQ-TPAQAGEEPLGVGSV----AAGGRYDGLVGMFDP 383 (517)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC--------------CCS----EEEEECHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECC-cccccccCCccccee----cCCCchhHHHHHhcc
Confidence 011222333343 23344432 2 244 4433333221 110 0000111 123455411100011
Q ss_pred CcccccEEEEecccccHHHHHHHHHHhcCC-CCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCC-CCcHH
Q 008152 467 AKTERPVMIHRAILGSVERMFAILLEHYKG-KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-DRKIQ 544 (576)
Q Consensus 467 g~~~~P~ii~~a~~GgiERlia~L~E~~~g-~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~-~~slg 544 (576)
|+...|.+ +.+ + |+||++++|.++..+ .+|.|.+|.||+|+|++++..++|.+|++.||++|++|++|+. +.+++
T Consensus 384 ~G~~~pav-Gfa-~-gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~ 460 (517)
T 4g85_A 384 KGRKVPCV-GLS-I-GVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLL 460 (517)
T ss_dssp SCCCCCEE-EEE-E-CHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCCHH
T ss_pred CCCCCCcc-ccc-c-hHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHH
Confidence 35677876 444 3 799999887765432 4666678899999999999999999999999999999999974 56899
Q ss_pred HHHHHhHhcCCceEEEecc
Q 008152 545 KKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 545 kkir~A~~~g~p~~iIiGp 563 (576)
++|++|++.|+||++|||+
T Consensus 461 ~q~k~A~~~g~~~~viiG~ 479 (517)
T 4g85_A 461 NQLQYCEEAGIPLVAIIGE 479 (517)
T ss_dssp HHHHHHHHHCCCEEEEECH
T ss_pred HHHHHHHHCCCCEEEEECC
Confidence 9999999999999999996
No 26
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=204.20 Aligned_cols=241 Identities=15% Similarity=0.167 Sum_probs=153.6
Q ss_pred hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC-
Q 008152 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE- 389 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~- 389 (576)
+++.+|++++++|.+||+|+.+ .+..|.|||+|.|+|+||..++...+ ++++.++.++++.+|++ +.+.++++..
T Consensus 99 ~~~~~p~k~~y~g~vfR~erp~--~~~gR~Ref~Q~g~ei~G~~~~~~aD-aEvi~l~~~~l~~lgl~~~~i~i~~~~~~ 175 (464)
T 4g84_A 99 MNKLTNIKRYHIAKVYRRDNPA--MTRGRYREFYQCDFDIAGNFDPMIPD-AECLKIMCEILSSLQIGDFLVKVNDRRIL 175 (464)
T ss_dssp HTTCSCEEEEEEEEEECCCC--------CCSEEEEEEEEEESCCSTTHHH-HHHHHHHHHHHHHHTCCCEEEEEEEHHHH
T ss_pred hcCCCCceeEEEecceeccCCc--cccCccceeeecceeccCCccchhhH-HHHHHHHHHHHHHhCCCCcceeecchhhH
Confidence 3456899999999999999754 23459999999999999987765433 67999999999999997 9999886410
Q ss_pred ----ccCCChHH----------------HHHH------------------------------------------------
Q 008152 390 ----KYLGDLAT----------------WEKA------------------------------------------------ 401 (576)
Q Consensus 390 ----~~~G~~~~----------------~~~a------------------------------------------------ 401 (576)
...|..+. |+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 4g84_A 176 DGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALE 255 (464)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHHHHHTTCHHHHTCHHHHH
T ss_pred HHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHH
Confidence 00010000 0000
Q ss_pred -H---HHHHHHHHHcCCC--cEEcCCC--C-ccc-ccceeEEEecccc----CceecceeeecccCCceeeeEEeecCCC
Q 008152 402 -E---AALTEALNEFGKP--WQINEGD--G-AFY-GPKIDISVSDALK----RKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (576)
Q Consensus 402 -~---~~L~~~l~~~~~~--~~~~~g~--~-afy-gpkid~~~~d~~g----r~~~~~tiqld~~~~~rf~l~y~~~~~g 467 (576)
. ..+.++|+..|.. +.++++. | .|| |..+++...+... ......++ -.++|||-....=..+
T Consensus 256 ~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i----~~GGRYD~L~~~~~~~ 331 (464)
T 4g84_A 256 GLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSV----AAGGRYDGLVGMFDPK 331 (464)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEE----EEEEECCSTGGGTSTT
T ss_pred HHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCccccee----ccCCchhHHHHHhccC
Confidence 0 1122333344432 3344432 2 244 4444433221100 00001111 1234554111000113
Q ss_pred cccccEEEEecccccHHHHHHHHHHhcCCCCC--CCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCC-CCcHH
Q 008152 468 KTERPVMIHRAILGSVERMFAILLEHYKGKWP--FWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-DRKIQ 544 (576)
Q Consensus 468 ~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P--~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~-~~slg 544 (576)
+...|.+ +.++ |+||++++|.++.. .|| .|.+|.+|+|++++++..++|.+|++.||++|++|++|+. +.+++
T Consensus 332 g~~~pav-Gfai--gieRl~~~l~~~~~-~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~ 407 (464)
T 4g84_A 332 GRKVPCV-GLSI--GVERIFSIVEQRLE-ALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLL 407 (464)
T ss_dssp CCCCCEE-EEEE--CHHHHHHHHHHHHH-TTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSCSSCCHH
T ss_pred CCCCCCc-cccc--cHHHHHHHHHHhcc-ccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHH
Confidence 5677876 5543 79999988887643 333 3456789999999999999999999999999999999974 56899
Q ss_pred HHHHHhHhcCCceEEEecc
Q 008152 545 KKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 545 kkir~A~~~g~p~~iIiGp 563 (576)
++|++|++.|+||++|+|+
T Consensus 408 ~q~k~A~~~g~~~~viiG~ 426 (464)
T 4g84_A 408 NQLQYCEEAGIPLVAIIGE 426 (464)
T ss_dssp HHHHHHHHHTCCEEEECCH
T ss_pred HHHHHHHHCCCCEEEEECc
Confidence 9999999999999999996
No 27
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.81 E-value=2.3e-19 Score=194.76 Aligned_cols=229 Identities=20% Similarity=0.181 Sum_probs=159.9
Q ss_pred hhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCC--e-EEEEEccCCC
Q 008152 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF--T-YELKLSTRPE 389 (576)
Q Consensus 313 ~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~--~-~~l~lstr~~ 389 (576)
++++|+|++++|.+||+|+.+ .| |.|||+|.|+|+||.+++..| ++++.++.++|+.||+ + +.+.+|++.-
T Consensus 119 ~~~~P~r~~y~g~vfR~e~~~--~g--R~ReF~Q~g~ei~G~~~~~~D--aEvi~l~~~~l~~lgl~~~~~~i~in~~~i 192 (456)
T 3lc0_A 119 SLLLPAKWYSIPQCWRYEAIT--RG--RRREHYQWNMDIVGVKSVSAE--VELVCAACWAMRSLGLSSKDVGIKVNSRKV 192 (456)
T ss_dssp TCCSSEEEEECCEEECCCC---------CCEEEEEEEEEESCCSTHHH--HHHHHHHHHHHHHTTCCTTTEEEEEEEHHH
T ss_pred ccCCCEEEEEeccEEecCCCC--CC--CccceEEEEEEEEcCCChHhh--HHHHHHHHHHHHHcCCCCCceEEEEcCHHH
Confidence 457899999999999999865 34 999999999999999987666 6899999999999999 5 9999998520
Q ss_pred -----ccCCChH----------------HHHH---------------------------------------HHHHHH---
Q 008152 390 -----KYLGDLA----------------TWEK---------------------------------------AEAALT--- 406 (576)
Q Consensus 390 -----~~~G~~~----------------~~~~---------------------------------------a~~~L~--- 406 (576)
...|.++ .|+. +.+.|+
T Consensus 193 l~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~L~~l~ 272 (456)
T 3lc0_A 193 LQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEAVKELRQFF 272 (456)
T ss_dssp HHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 0011100 0110 011222
Q ss_pred HHHHHcCCC--cEEcCCC--C-ccc-ccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcc-cccEEEEecc
Q 008152 407 EALNEFGKP--WQINEGD--G-AFY-GPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKT-ERPVMIHRAI 479 (576)
Q Consensus 407 ~~l~~~~~~--~~~~~g~--~-afy-gpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~-~~P~ii~~a~ 479 (576)
++|+.+|+. +.++++. | .|| |..++++ +..|.. +++ -.++|||-... .- |+. ..|.+ +.|+
T Consensus 273 ~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~--~~~g~~---~~I----~~GGRYD~Lv~-~f-g~~~~~Pav-GFai 340 (456)
T 3lc0_A 273 EQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGF--DREGKF---RAL----CGGGRYDNLLT-TY-GSPTPIPCA-GFGF 340 (456)
T ss_dssp HHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEE--ETTSCS---SCS----EEEEECSSHHH-HT-TCSSCCCEE-EEEE
T ss_pred HHHHHcCCCceEEEecCccCCccccCCeEEEEE--ECCCCc---ceE----eecccHHHHHH-Hh-CCCCCCCEE-EEEe
Confidence 333455665 6677763 2 355 5555544 222211 222 23567752210 11 344 57876 6654
Q ss_pred cccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEE
Q 008152 480 LGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHY 559 (576)
Q Consensus 480 ~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~i 559 (576)
|+||++.+|.+. +..|..-.+.+|+|+|.+++...+|.++++.||++|++|++|..+.+++++++.|++.|+||++
T Consensus 341 --g~eRl~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k~A~k~ga~~vv 416 (456)
T 3lc0_A 341 --GDCVIVELLQEK--RLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAV 416 (456)
T ss_dssp --ESSHHHHHHHHT--TCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHTTEEEEE
T ss_pred --EHHHHHHHHHhc--CCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHcCCCEEE
Confidence 799999888763 4444333457899999999888999999999999999999999889999999999999999999
Q ss_pred Eecc
Q 008152 560 FYCP 563 (576)
Q Consensus 560 IiGp 563 (576)
|+|+
T Consensus 417 iiGe 420 (456)
T 3lc0_A 417 LVAP 420 (456)
T ss_dssp EECH
T ss_pred EECC
Confidence 9997
No 28
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.81 E-value=1e-19 Score=181.29 Aligned_cols=175 Identities=13% Similarity=0.089 Sum_probs=132.2
Q ss_pred cEEEeecCCCCHHHHHhhhccccccceEEE-EECCEEee-ccccccCCCcEEE-eecCChhhhHHHHHHHHHHHHHHHHH
Q 008152 92 SVKEGKRWETSPMDIAQGISKSLAANALIS-MVNGVLWD-MTRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQ 168 (576)
Q Consensus 92 ~~~~~~~~~ttp~dia~~i~~~~~~~~v~a-~Vng~l~d-L~~~l~~d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A~~~ 168 (576)
++..++.+|..|.|...-.. ..+.-+ +.+|.++. +..++..+..|+. ||++.+ -..+.|||++|||++|+++
T Consensus 36 ~T~FYpegGGQ~~D~G~i~~----~~V~~v~~~~g~i~H~~~~~l~~g~~V~~~vD~~rR-~~~~~~HTa~HLL~~al~~ 110 (241)
T 3kew_A 36 QTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHVLEKEPKKLKNLQCELDWERR-FDGMQQHLGQHLLSGCFYD 110 (241)
T ss_dssp EECCCCCBTTBCCCCEEETT----EEEEEEEEETTEEEEEESSCCCCCSSEEEEECHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCCCCCEEEEee----EEEEEEEEeCCEEEEEECCcCCCCCEEEEEECHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 34556666777776542211 122222 24676553 3456666667775 666544 3456799999999999999
Q ss_pred HhCCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhcccCCC
Q 008152 169 QYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPA 246 (576)
Q Consensus 169 ~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~ 246 (576)
+||.+ ..|+.++ .+++||||. .++|++++++||++||++| |+||++.+++++||.+++.. + +. .. .
T Consensus 111 ~~g~~-~~G~~v~-~~~~r~Df~---~~lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~---~--~~-e~-~ 178 (241)
T 3kew_A 111 LFGAN-TCGFHLG-KEISTVDIV---GFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTR---R--AL-PK-T 178 (241)
T ss_dssp HHCCC-EEEEEEC-SSCEEEEEE---SCCCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCCS---S--CC-CC-C
T ss_pred HCCCC-eEecccc-CCeEEEEEC---CCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcChh---h--cC-Cc-c
Confidence 99876 4787775 279999997 4799999999999999999 99999999999999987521 1 22 21 2
Q ss_pred CCcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecc
Q 008152 247 DKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 247 ~~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
++.|++|++|+| +++|+||||+|||+|+.|+|++.++
T Consensus 179 ~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~~ 216 (241)
T 3kew_A 179 DEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEK 216 (241)
T ss_dssp SSCCCEEEETTTEEEECCSCCCSBSGGGCCEEEEEEEE
T ss_pred CCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEEEEEec
Confidence 468999999998 8999999999999999999999875
No 29
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.81 E-value=1.3e-19 Score=203.69 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=116.2
Q ss_pred cEEE-eecCChhhhHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cC
Q 008152 139 DLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQ 215 (576)
Q Consensus 139 ~ve~-l~~~~~eG~~vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~ 215 (576)
.|+. ||++.. -..+++||++|||++|++++||.++.+.++.-.++|+||||.. ..++|++++++||++||++| |+
T Consensus 583 ~V~~~VD~~rR-~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~-~~~lT~edL~~IE~~vNeiI~~nl 660 (739)
T 2ztg_A 583 KVKGVIDSDVR-WRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTH-FRRPSEEEIKEIEMLANREILANK 660 (739)
T ss_dssp EEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEEC-SSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEcHHHH-HHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCC
Confidence 4443 444433 2458899999999999999999888887777223899999986 56899999999999999999 99
Q ss_pred CEEEEEeCHHHHHHhhccCcchhhhcc-cCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecc
Q 008152 216 PFERIEVTRDQALEMFSDNNFKVEIIN-DLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 216 pi~r~~vs~eeA~~lF~~~~~K~~Ll~-~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
||++.+++++||.++| +..+++ ..+.++.|+||+||+++|+|+||||+|||+|+.|+|+++++
T Consensus 661 pV~~~~~s~eEA~~~~-----~l~L~~~~~~~~d~VRVV~IGd~~elCGGTHV~nTgeIg~fkIls~s~ 724 (739)
T 2ztg_A 661 PIKWEWMDRIEAERKF-----GFRLYQGGVPPGRKIRVVQVGDDVQACGGTHCRSTGEIGMLKILKVES 724 (739)
T ss_dssp BEEEEEEEHHHHHHHH-----CGGGGTTCCCCSSEEEEEEETTEEEECCSCCCSBGGGGCCEEEEEEEE
T ss_pred CEEEEEeCHHHHHHhC-----CHhhhcCCCCCCCeEEEEEECCeeeCcCCcCcccHhHcCcEEEEEEeE
Confidence 9999999999999987 456664 23345789999999999999999999999999999998864
No 30
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.78 E-value=1.6e-19 Score=193.95 Aligned_cols=161 Identities=25% Similarity=0.369 Sum_probs=125.7
Q ss_pred hhhcCCeeeeeeccceeccccC---CCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEE-EEEccC
Q 008152 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYE-LKLSTR 387 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g---~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~-l~lstr 387 (576)
+++++|++++++|.+||+|.++ ...||+|+|||+|.|+|+||+++++.+++.++++++.++|+.||++|+ +.++++
T Consensus 246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~g 325 (425)
T 2dq3_A 246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTG 325 (425)
T ss_dssp ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCC
Confidence 5789999999999999999965 578999999999999999999999999999999999999999999977 556654
Q ss_pred CCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEec----cccCceecceeeecccCCceeeeEEee
Q 008152 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSD----ALKRKFQCATLQLDFQLPDRFNLGYSA 463 (576)
Q Consensus 388 ~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d----~~gr~~~~~tiqld~~~~~rf~l~y~~ 463 (576)
. +|..+ .-+.|+.+.. .++...+|+++ .||+ +.||++.|.+
T Consensus 326 d---lg~~a------------------------------~~~~diE~w~p~~~~~~ei~s~sn~-~Dfq-a~r~~i~y~~ 370 (425)
T 2dq3_A 326 D---LGFSA------------------------------AKTYDIEVWFPSQNKYREISSCSNC-EDFQ-ARRMNTRFKD 370 (425)
T ss_dssp T---CCTTC------------------------------SEEEEEEEEEGGGTEEEEEEEEEEC-TTHH-HHHHTEEEEC
T ss_pred c---CCChH------------------------------HhccchhhccchhHHHHHHHHcCCc-cccC-cccCCeEEEC
Confidence 2 22110 0112222222 12223567776 7887 8999999987
Q ss_pred cCCCcccccEEEEeccccc---HHHHHHHHHHhcC---C--CCCCCCCCce-EEEEe
Q 008152 464 EDEAKTERPVMIHRAILGS---VERMFAILLEHYK---G--KWPFWLSPRQ-AIVCP 511 (576)
Q Consensus 464 ~~~g~~~~P~ii~~a~~Gg---iERlia~L~E~~~---g--~~P~~laP~q-V~Vip 511 (576)
++ |++. .++| ++.|+ ++|++++|+|++. | +||+||+|+| +.+|+
T Consensus 371 ~~-~~k~--~~vH-tl~Gs~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 371 SK-TGKN--RFVH-TLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp TT-TCSE--EECE-EEEEEEEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred CC-CCee--EEEE-EEeccccHHHHHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 66 3332 2668 88887 9999999999987 7 8999999999 77765
No 31
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.77 E-value=5e-19 Score=191.42 Aligned_cols=160 Identities=19% Similarity=0.282 Sum_probs=120.9
Q ss_pred hhhcCCeeeeeeccceecccc---CCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 008152 312 AFAELPLRLADFGVLHRNEAS---GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~---g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~ 388 (576)
+|+++|++++++|.+||+|.+ +...||+|+|+|+|.|+|+||+++++.+|+.++++++.++|+.||+++.+...+++
T Consensus 267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~g 346 (455)
T 2dq0_A 267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTG 346 (455)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCceEEEECCCc
Confidence 588999999999999999996 56799999999999999999999999999999999999999999999887775442
Q ss_pred CccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEe-ccccCceecceee--ecccCCceeeeEEeec-
Q 008152 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVS-DALKRKFQCATLQ--LDFQLPDRFNLGYSAE- 464 (576)
Q Consensus 389 ~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~-d~~gr~~~~~tiq--ld~~~~~rf~l~y~~~- 464 (576)
+ +|.. + .-++|+.+. ++.|+.++++++. .||+ +.||++.|.++
T Consensus 347 d--lg~~----------------------------a--~~~~diE~w~p~~~~~~ei~s~s~c~Dfq-arR~~iry~~~~ 393 (455)
T 2dq0_A 347 D--LGYV----------------------------A--AKKYDIEAWMPGQGKFREVVSASNCTDWQ-ARRLNIRFRDRT 393 (455)
T ss_dssp G--SCSS----------------------------C--SEEEEEEEEETTTTEEEEEEEEEECTTTT-HHHHTEEEESST
T ss_pred c--ccCh----------------------------h--hceeeeeeecCcCCcccEEEeeccchhhH-hhccCcEEecCC
Confidence 2 2111 1 012233222 2334445554443 3666 89999999876
Q ss_pred CCCcccccEEEEecccccHHHHHHHHHHhcC---C--CCCCCCCCce
Q 008152 465 DEAKTERPVMIHRAILGSVERMFAILLEHYK---G--KWPFWLSPRQ 506 (576)
Q Consensus 465 ~~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g--~~P~~laP~q 506 (576)
+ |....++++.++.+ |++|++++|+|++. | +||.||+|+|
T Consensus 394 ~-g~~~~vHtlngs~l-av~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 394 D-EKPRYVHTLNSTAI-ATSRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp T-SCCEECEEEEEEEE-EHHHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred C-CcEEEEEEEechHh-HHHHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 4 54433333322222 68999999999986 7 8999999999
No 32
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.75 E-value=9.5e-18 Score=188.64 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=112.8
Q ss_pred CCcEEE-eecCChhhhHHHHHHHHHHHHHHHHHHhCCeE-EecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh-
Q 008152 137 DCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKL-CIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA- 213 (576)
Q Consensus 137 d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A~~~~fg~~l-~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI- 213 (576)
...|+. ||++.. -..+.+||++|||++|++++||.++ ..|+.+. .+++||||.. ..++|++|+++||++||++|
T Consensus 594 Gd~V~~~VD~~rR-~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~-~d~~rfDFs~-~~~lt~edL~~IE~~vNeiI~ 670 (752)
T 2zze_A 594 GMIVHGXIDWXRR-IQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLT-TDWARLDISH-YXRISEEELXEIEMLANRIVM 670 (752)
T ss_dssp TCEEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEC-SSCEEEEEEC-SSCCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeHHHH-HHHHHHhHHHHHHHHHHHHHcCCceeeecCccc-CCceEEEEeC-CCCCCHHHHHHHHHHHHHHHH
Confidence 334443 544433 2347799999999999999998765 6677764 2899999986 56899999999999999999
Q ss_pred -cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecc
Q 008152 214 -KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 214 -~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
++||++.+++++||.+++...-++ ...+.++.|+||++|+| +++|+||||+|||+|+.|+|++.++
T Consensus 671 ~nlpV~~~~~s~eEA~~~~~~~lf~----~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~fKIls~s~ 738 (752)
T 2zze_A 671 EDRXVTWEWLPRTTAEQXYGFRLYQ----GGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIXILRTER 738 (752)
T ss_dssp HTCBEEEEEEEHHHHHHHHCGGGCS----SCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCEEEEEEEE
T ss_pred hCCccceeecCHHHHhhcchhhhhc----CCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEEEEEEEEE
Confidence 999999999999999988642221 01123578999999998 8999999999999999999998764
No 33
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.73 E-value=1.4e-17 Score=163.44 Aligned_cols=157 Identities=19% Similarity=0.157 Sum_probs=115.0
Q ss_pred EEEeecCCCCHHHHHhhhccccccceEEEEE--CCEEeec---cccccCCCcEEE-eecCChhhhHHHHHHHHHHHHHHH
Q 008152 93 VKEGKRWETSPMDIAQGISKSLAANALISMV--NGVLWDM---TRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAI 166 (576)
Q Consensus 93 ~~~~~~~~ttp~dia~~i~~~~~~~~v~a~V--ng~l~dL---~~~l~~d~~ve~-l~~~~~eG~~vy~hS~ahlL~~A~ 166 (576)
+..++.+|..|.|...-. . -.+.-++. +|.++.. .-++..+..|+. ||++.+ ...+.|||++|||++|+
T Consensus 35 T~Fype~GGQ~~D~G~i~--~--~~V~~v~~~~~~~i~H~~~~~~~l~~g~~v~~~vD~~rR-~~~~~~HTA~HlL~~Al 109 (216)
T 2e1b_A 35 TIFYPTGGGQPHDRGTIN--G--VEVLDVYKDEEGNVWHVVKEPEKFKVGDEVELKIDWDYR-YKLMRIHTGLHLLEHVL 109 (216)
T ss_dssp CCSCCCCTTCCCCCEEET--T--EEEEEEECCTTCCCEEEESCGGGCCSSSCEEEEECHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCCEEEEc--c--EEEEEEEECcCCEEEEEEccCCCcCCCCEEEEEECHHHH-HHHHHHhHHHHHHHHHH
Confidence 344555566665543221 1 12222322 5544422 224555556664 665544 46688999999999999
Q ss_pred HHHhCC---eEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhc
Q 008152 167 EQQYGC---KLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEII 241 (576)
Q Consensus 167 ~~~fg~---~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll 241 (576)
+++||. +.. |..+. .+++||||.. +.++|++ +++||++||++| |+||++.++++
T Consensus 110 ~~~~g~~~~~~~-g~~v~-~~~~r~Df~~-~~~lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~----------------- 168 (216)
T 2e1b_A 110 NEVLGEGNWQLV-GSGMS-VEKGRYDIAY-PENLNKY-KEQIISLFNKYVDEGGEVKIWWEGD----------------- 168 (216)
T ss_dssp HHHHTTTSCEEE-ECCBC-SSEEEEEEEC-SSCGGGG-HHHHHHHHHHHHHHCCBEEEEESSS-----------------
T ss_pred HHHcCCccceee-eeeEc-CCcEEEEEeC-CCCCCHH-HHHHHHHHHHHHhcCCCEEEEEcCC-----------------
Confidence 999987 665 55553 2899999986 4568886 999999999999 99999998865
Q ss_pred ccCCCCCcEEEEEeCCe-ecccCCCCCCCCCCcccEEEEeecc
Q 008152 242 NDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (576)
Q Consensus 242 ~~~~~~~~v~vy~~g~~-~D~c~Gphvp~Tg~Ik~f~l~~~~~ 283 (576)
+++++||+| +++|+||||+|||+|+.|+|++.++
T Consensus 169 --------vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~~ 203 (216)
T 2e1b_A 169 --------RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSS 203 (216)
T ss_dssp --------CEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEEE
T ss_pred --------EEEEEECCEEEECCCCCCcccHhhCceEEEEEEeE
Confidence 789999998 8999999999999999999998764
No 34
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-18 Score=144.12 Aligned_cols=82 Identities=45% Similarity=0.847 Sum_probs=77.5
Q ss_pred CCCCCCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHH
Q 008152 78 SLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHS 157 (576)
Q Consensus 78 ~~~~~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS 157 (576)
++++++|+|++|||+.++++.|++|+.|+|+.++..+++.+++|+|||++|||++||+.||+|+|+++++++|+++||||
T Consensus 6 ~~~~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~eg~~i~rHS 85 (88)
T 1wwt_A 6 SGDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYSGP 85 (88)
T ss_dssp CCSCCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCSCCSCSCCCC
T ss_pred cCCCCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCHHHhhheecc
Confidence 45668899999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 008152 158 SA 159 (576)
Q Consensus 158 ~a 159 (576)
++
T Consensus 86 ~~ 87 (88)
T 1wwt_A 86 SS 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 35
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.65 E-value=1.3e-16 Score=173.84 Aligned_cols=162 Identities=23% Similarity=0.283 Sum_probs=119.3
Q ss_pred hhhcCCeeeeeeccceecccc-C-CCccceecccccccCeeEEcCc--hhHHHHHHHHHHHHHHHHHHhCCeEEE-EEcc
Q 008152 312 AFAELPLRLADFGVLHRNEAS-G-ALTGLTRVRRFQQDDAHIFCRE--SQIKDEVRGVLEFIDYAYRIFGFTYEL-KLST 386 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~-g-~l~gLiRvreF~q~da~iF~~~--~~~~~e~~~~l~~~~~i~~~lG~~~~l-~lst 386 (576)
+|++||+++++++.+||+|.+ | ...||+|+|+|+|.|+|+||++ +++.+|+.++++++.++|+.||++|++ .+.+
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~t 376 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPT 376 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 689999999999999999986 2 3689999999999999999999 589999999999999999999999875 4444
Q ss_pred CCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccc----cCceecceeeecccCCceeeeEEe
Q 008152 387 RPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDAL----KRKFQCATLQLDFQLPDRFNLGYS 462 (576)
Q Consensus 387 r~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~----gr~~~~~tiqld~~~~~rf~l~y~ 462 (576)
+ .+|..+. -+.|+.+.... +.-+.|+. +.||+ +.||++.|.
T Consensus 377 g---dlg~~a~------------------------------~~~DiE~w~p~~~~~~Ei~s~sn-~~Dfq-arR~~iry~ 421 (501)
T 1wle_A 377 Q---ELGLPAY------------------------------RKFDIEAWMPGRGRFGEVTSASN-CTDFQ-SRRLHIMFQ 421 (501)
T ss_dssp G---GSTTTCS------------------------------EEEEEEEEETTTTEEEEEEEEEE-CTTHH-HHHHTCEEE
T ss_pred c---ccCCchh------------------------------heecHhhcccccccceeEEeccc-cccch-hhhcCcEEE
Confidence 3 2221100 11232222111 11133332 36886 899999998
Q ss_pred ecCCCcccccEEEEecccccHHHHHHHHHHhcC---C--CCCCCCCCce-EEEE
Q 008152 463 AEDEAKTERPVMIHRAILGSVERMFAILLEHYK---G--KWPFWLSPRQ-AIVC 510 (576)
Q Consensus 463 ~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g--~~P~~laP~q-V~Vi 510 (576)
+++ |....++++..+.+ +++|+|++|+|++. | .||.||+|++ .-+|
T Consensus 422 ~~~-gk~~~vHtlngSgl-av~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 422 TEA-GELQFAHTVNATGC-AVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp CSS-SCEEECEEEEEEEE-EHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred CCC-CCEEEEEEECCccc-hHHHHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 765 55555555444433 59999999999975 6 7999999997 5555
No 36
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.65 E-value=5.4e-17 Score=174.07 Aligned_cols=155 Identities=27% Similarity=0.455 Sum_probs=118.1
Q ss_pred hhhcCCeeeeeeccceeccccC---CCccceecccccccCeeEEcCc--hhHHHHHHHHHHHHHHHHHHhCCeEEE-EEc
Q 008152 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRE--SQIKDEVRGVLEFIDYAYRIFGFTYEL-KLS 385 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~g---~l~gLiRvreF~q~da~iF~~~--~~~~~e~~~~l~~~~~i~~~lG~~~~l-~ls 385 (576)
+|+++|++++++|.+||+|..+ ...||+|+|||+|.|+|+||.+ +++.+++.++++++.++|+.||+++++ .+.
T Consensus 240 s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~ 319 (421)
T 1ses_A 240 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVA 319 (421)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 6889999999999999999842 2589999999999999999999 899999999999999999999999774 443
Q ss_pred cCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEec----cccCceecceeeecccCCceeeeEE
Q 008152 386 TRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSD----ALKRKFQCATLQLDFQLPDRFNLGY 461 (576)
Q Consensus 386 tr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d----~~gr~~~~~tiqld~~~~~rf~l~y 461 (576)
++ .+|..+ .-+.|+.+.. ..+..++|+++ .||+ +.||++.|
T Consensus 320 t~---dlg~~a------------------------------~~~~DiE~w~p~~~~~~ei~s~s~~-~Dfq-arr~~i~y 364 (421)
T 1ses_A 320 TG---DMGPGK------------------------------WRQVDIEVYLPSEGRYRETHSCSAL-LDWQ-ARRANLRY 364 (421)
T ss_dssp HH---HHCTTC------------------------------SEEEEEEEEETTTTEEEEEEEEEEE-ETHH-HHHHTCEE
T ss_pred Cc---cCCchh------------------------------hhcccHhheechhccchheeecccc-chhh-hhhhcCEe
Confidence 32 111110 0112332221 12233677777 7887 88999999
Q ss_pred eecCCCcccccEEEEeccccc---HHHHHHHHHHhcC---C--CCCCCCCCce
Q 008152 462 SAEDEAKTERPVMIHRAILGS---VERMFAILLEHYK---G--KWPFWLSPRQ 506 (576)
Q Consensus 462 ~~~~~g~~~~P~ii~~a~~Gg---iERlia~L~E~~~---g--~~P~~laP~q 506 (576)
.+++ | .|.++| ++.|+ ++|++++|+|++. | +||.+|+|+.
T Consensus 365 ~~~~-~---~~~~vh-tlngs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 365 RDPE-G---RVRYAY-TLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp ECTT-S---CEEECE-EEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred ECCC-C---CEEEEE-ecCCccchHHHHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 8754 3 456667 55565 9999999999974 5 7999999986
No 37
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=158.25 Aligned_cols=169 Identities=18% Similarity=0.281 Sum_probs=119.4
Q ss_pred hhhcCCeeeeeeccceecccc---CCCccceecccccccCeeEEcCchh--HHHHHHHHHHHHHHHHHHhCCeEEEEEcc
Q 008152 312 AFAELPLRLADFGVLHRNEAS---GALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELKLST 386 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~---g~l~gLiRvreF~q~da~iF~~~~~--~~~e~~~~l~~~~~i~~~lG~~~~l~lst 386 (576)
+|++||+++++++.+||+|.. +...||+|+|+|+|.|+|+||++++ +.+|+.++++++.++|+.||++|++..-.
T Consensus 286 s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~ 365 (522)
T 3vbb_A 286 RPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365 (522)
T ss_dssp CTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcC
Confidence 689999999999999999985 3679999999999999999999987 99999999999999999999998765422
Q ss_pred CCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccc-cCceeccee--eecccCCceeeeEEee
Q 008152 387 RPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDAL-KRKFQCATL--QLDFQLPDRFNLGYSA 463 (576)
Q Consensus 387 r~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~-gr~~~~~ti--qld~~~~~rf~l~y~~ 463 (576)
. +.+|.. + .-++|+.+.... +..-+.+.+ .-||+ +.|+++.|.+
T Consensus 366 t--gdlg~~----------------------------a--sktyDiE~w~P~~~~y~EIsScSnc~Dyq-Arr~~iry~~ 412 (522)
T 3vbb_A 366 S--GSLNHA----------------------------A--SKKLDLEAWFPGSGAFRELVSCSNCTDYQ-ARRLRIRYGQ 412 (522)
T ss_dssp G--GGCCTT----------------------------C--SEEEEEEEEETTTTEEEEEEEEEECTTHH-HHHHTCEESC
T ss_pred C--ccCCCc----------------------------h--hheeceeEecCCCCceeEEEEecCCCCCc-cceeeeEEcc
Confidence 1 122211 1 112343332211 111111111 12543 5788999975
Q ss_pred cC--CCcccccEEEEecccccHHHHHHHHHHhcC---C-CCCCCCCCceE----EEEeCCC
Q 008152 464 ED--EAKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPRQA----IVCPVSE 514 (576)
Q Consensus 464 ~~--~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~laP~qV----~Vipv~~ 514 (576)
.. +|....++.+..+.+ ++.|+|++|+|+|. | .+|..|+|+.. .|+|+..
T Consensus 413 ~~~~~~k~~~vhtlNgs~l-av~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~ 472 (522)
T 3vbb_A 413 TKKMMDKVEFVHMLNATMC-ATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVK 472 (522)
T ss_dssp C---CCCCCBCEEEEEEEE-EHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCS
T ss_pred ccccCCCeeeceEEeccch-HHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCC
Confidence 31 245566666554544 59999999999874 3 79999999987 8999874
No 38
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.51 E-value=3.3e-14 Score=153.67 Aligned_cols=169 Identities=19% Similarity=0.270 Sum_probs=119.7
Q ss_pred hhhcCCeeeeeeccceecccc--C-CCccceecccccccCeeEEcCchh--HHHHHHHHHHHHHHHHHHhCCeEEEEE-c
Q 008152 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELKL-S 385 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~~--g-~l~gLiRvreF~q~da~iF~~~~~--~~~e~~~~l~~~~~i~~~lG~~~~l~l-s 385 (576)
+|++||+++++++.+||+|.. | ...||+|+|+|+|.|+|+||++++ +.+|+.++++++.++|+.||++|++.. .
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~ 363 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNIC 363 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 689999999999999999983 4 578999999999999999999988 999999999999999999999987654 3
Q ss_pred cCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccc-cCceeccee--eecccCCceeeeEEe
Q 008152 386 TRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDAL-KRKFQCATL--QLDFQLPDRFNLGYS 462 (576)
Q Consensus 386 tr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~-gr~~~~~ti--qld~~~~~rf~l~y~ 462 (576)
++ -+|.. + .-++|+.+.... +..-+.+.+ ..||+ +.|+++.|.
T Consensus 364 tg---dlg~~----------------------------a--~~~yDiE~w~P~~~~~~EIsS~Snc~dyq-Arr~~iry~ 409 (484)
T 3lss_A 364 SG---ALNNA----------------------------A--AKKYDLEAWFPASGAFRELVSCSNCTDYQ-SQSVNCRYG 409 (484)
T ss_dssp TT---TCCSS----------------------------C--SEEEEEEEEETTTTEEEEEEEEEECTTHH-HHHHTCEES
T ss_pred Cc---ccCCc----------------------------h--hheechheecCCCCCeeEEEEecCccccc-ccccceEEe
Confidence 32 12211 0 112343332211 111111111 13554 578899997
Q ss_pred ecC-----CCcccccEEEEecccccHHHHHHHHHHhcC---C-CCCCCCCCce--EEEEeCCCC
Q 008152 463 AED-----EAKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPRQ--AIVCPVSEK 515 (576)
Q Consensus 463 ~~~-----~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~laP~q--V~Vipv~~~ 515 (576)
+.. +|....++.+..+.+ ++.|++++|+|+|. | .+|..|+|+- .-+||+...
T Consensus 410 ~~~~~~~~~~~~~~vhtlNgt~~-av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~~~ 472 (484)
T 3lss_A 410 PNLRGTAAQNVKEYCHMLNGTLC-AITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFENN 472 (484)
T ss_dssp SCCC----CCSCEECEEEEEEEE-EHHHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECCCC
T ss_pred ccccccccCCCceeeeEEeccch-HHHHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecCcc
Confidence 542 133445555444545 69999999999874 3 7999999986 777887643
No 39
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.50 E-value=1.3e-14 Score=156.58 Aligned_cols=167 Identities=19% Similarity=0.333 Sum_probs=116.3
Q ss_pred hhcCCeeeeeeccceeccccC---CCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC
Q 008152 313 FAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE 389 (576)
Q Consensus 313 ~relpl~l~~vg~l~R~e~~g---~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~ 389 (576)
|++||+++++++.+||+|..+ ...||+|+|+|+|.|+|+||+++++.+|+.++++++.++|+.||++|++..-+.
T Consensus 264 y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~t-- 341 (485)
T 3qne_A 264 AEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVS-- 341 (485)
T ss_dssp HHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCG--
T ss_pred hhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCC--
Confidence 999999999999999999866 679999999999999999999999999999999999999999999987654321
Q ss_pred ccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCcee----cceeeecccCCceeeeEEeecC
Q 008152 390 KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQ----CATLQLDFQLPDRFNLGYSAED 465 (576)
Q Consensus 390 ~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~----~~tiqld~~~~~rf~l~y~~~~ 465 (576)
+.+|.. + .-++|+.+.-.....|. |+.+ .||+ +.|+++.|.++.
T Consensus 342 gdlg~~----------------------------a--~~tyDiE~w~P~~~~~~Eiss~Snc-~dyq-Arr~~iry~~~~ 389 (485)
T 3qne_A 342 GELNNA----------------------------A--AKKYDLEAWFPFQQEYKELVSCSNC-TDYQ-SRNLEIRCGIKQ 389 (485)
T ss_dssp GGCCTT----------------------------C--SEEEEEEEEETTTTEEEEEEEEEEC-TTHH-HHHTTCEECC--
T ss_pred cccCCc----------------------------h--hhheeeeEeccCCCceeEEEEecCC-cCcc-ccccceEEeccc
Confidence 112211 1 01233332221111111 2211 2553 578899997542
Q ss_pred --CCcccccEEEEecccccHHHHHHHHHHhcC---C-CCCCCCCCceE---EEEeCCC
Q 008152 466 --EAKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPRQA---IVCPVSE 514 (576)
Q Consensus 466 --~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g-~~P~~laP~qV---~Vipv~~ 514 (576)
+|....++.+..+.+ ++.|+|++|+|+|. | ++|..|+|+-. .+||+..
T Consensus 390 ~~~~~~~~vhtlNgt~l-av~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~~~i~~~~ 446 (485)
T 3qne_A 390 QNQQEKKYVHCLNSTLS-ATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIK 446 (485)
T ss_dssp ----CCCBCEEEEEEEE-EHHHHHHHHHHHSEETTEEECCHHHHTTSTTCCSEEECCC
T ss_pred ccCCCceeeEEEecchh-HHHHHHHHHHHhcCCCCceecChhhcCccCCcceEeeccc
Confidence 144455555444444 69999999999874 4 79998999864 7789863
No 40
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.50 E-value=1.7e-14 Score=158.67 Aligned_cols=159 Identities=26% Similarity=0.398 Sum_probs=114.9
Q ss_pred hhhcCCeeeeeeccceeccc--cC-CCccceecccccccCeeEEcCch--hHHHHHHHHHHHHHHHHHHhCCeEEEEEcc
Q 008152 312 AFAELPLRLADFGVLHRNEA--SG-ALTGLTRVRRFQQDDAHIFCRES--QIKDEVRGVLEFIDYAYRIFGFTYELKLST 386 (576)
Q Consensus 312 s~relpl~l~~vg~l~R~e~--~g-~l~gLiRvreF~q~da~iF~~~~--~~~~e~~~~l~~~~~i~~~lG~~~~l~lst 386 (576)
+|++||++++++|.+||+|. +| ...||+|+|||+|.|+|+||+++ ++.+|+.++++++.++|+.||++|++..-.
T Consensus 349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~ 428 (536)
T 3err_A 349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVA 428 (536)
T ss_dssp EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 78999999999999999998 35 57999999999999999999998 999999999999999999999998765432
Q ss_pred CCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEecc-ccCceeccee--eecccCCceeeeEEee
Q 008152 387 RPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDA-LKRKFQCATL--QLDFQLPDRFNLGYSA 463 (576)
Q Consensus 387 r~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~-~gr~~~~~ti--qld~~~~~rf~l~y~~ 463 (576)
. +.+|.. + .-++|+.+... .++.-+.+++ .-||+ +.|+++.|.+
T Consensus 429 t--gdlg~~----------------------------a--~~~yDiE~w~p~~~~~~Ei~s~sn~~dyq-arr~~iry~~ 475 (536)
T 3err_A 429 T--GDMGPG----------------------------K--WRQVDIEVYLPSEGRYRETHSCSALLDWQ-ARRANLRYRD 475 (536)
T ss_dssp T--TTSCTT----------------------------C--SEEEEEEEEEGGGTEEEEEEEEEEEETHH-HHHHTCEEEC
T ss_pred C--cccCCC----------------------------h--hheeeeeEecCCCCCeEEEEEecCccChh-hcccCeEEEC
Confidence 1 122211 1 12334433221 1222222222 13664 6789999987
Q ss_pred cCCCcccccEEEEecccccHHHHHHHHHHhcC---C--CCCCCCCCc
Q 008152 464 EDEAKTERPVMIHRAILGSVERMFAILLEHYK---G--KWPFWLSPR 505 (576)
Q Consensus 464 ~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~---g--~~P~~laP~ 505 (576)
++ |+...++.+..+.+ +++|++++|+|++. | ++|..|+|+
T Consensus 476 ~~-~k~~~vhtlngs~~-a~~R~l~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 476 PE-GRVRYAYTLNNTAL-ATPRILAMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp TT-SCEEECEEEEEEEE-EETHHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred CC-CCeEeeeEEeccch-hHHHHHHHHHHhcCCCCCcEeCChhhCCc
Confidence 65 55666666555545 59999999999874 4 578777775
No 41
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.45 E-value=6e-13 Score=142.05 Aligned_cols=219 Identities=15% Similarity=0.103 Sum_probs=133.8
Q ss_pred hhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC--
Q 008152 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE-- 389 (576)
Q Consensus 313 ~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~~-- 389 (576)
++++|+|++++|.+||+|+++ .| |.|||+|.|+|+||.+++..| ++++.++.++|+.||++ +++.+|++.-
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~--~g--R~Ref~Q~g~ei~G~~~~~aD--aEvi~l~~~~l~~lgl~~~~i~l~~~~i~~ 172 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNE--GG--KPAEFEQLGVELIGDGTASAD--GEVIALMIAALKRAGLSEFKVAIGHVGYVN 172 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC-----C--CCSEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHTTCCSEEEEEEEHHHHH
T ss_pred cCCCCeEEEEEcCEEeCCCCC--CC--CCCccEEeEEEEECCCChHhH--HHHHHHHHHHHHHCCCCceEEEecCHHHHH
Confidence 357899999999999999765 34 999999999999999877666 78999999999999996 9999987520
Q ss_pred ---ccCCC-h---------------------------------------------HHHHHH------------H---HHH
Q 008152 390 ---KYLGD-L---------------------------------------------ATWEKA------------E---AAL 405 (576)
Q Consensus 390 ---~~~G~-~---------------------------------------------~~~~~a------------~---~~L 405 (576)
..+|. . +..+++ . +.+
T Consensus 173 ~ll~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~~~~~~~~~l~~l~~l 252 (400)
T 3od1_A 173 ALLMDVVGNEQRADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEKGKTALAEMTKL 252 (400)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhhcChhhHHHHHHHHHH
Confidence 00000 0 000110 0 112
Q ss_pred HHHHHHcCCC--cEEcCCC--C-ccc-ccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCcccccEEEEecc
Q 008152 406 TEALNEFGKP--WQINEGD--G-AFY-GPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAI 479 (576)
Q Consensus 406 ~~~l~~~~~~--~~~~~g~--~-afy-gpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~ 479 (576)
.+.|+.+|.+ +.++++. | .|| |..++++. +..|. ++ -.++|||-... .- |+ ..|.+ +.++
T Consensus 253 ~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~-~~~g~-----~i----~~GGRYD~L~~-~f-G~-~~pav-Gfai 318 (400)
T 3od1_A 253 YEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYG-NRLGV-----PL----CSGGRYDELLS-KF-HR-PAQAT-GFGV 318 (400)
T ss_dssp HHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEE-TTCSS-----EE----EEEEECTTHHH-HT-TC-CCCEE-EEEE
T ss_pred HHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEE-CCCCC-----ee----ecccccchhhh-cc-CC-CCCEE-EEEe
Confidence 2333344443 4455542 2 234 44444332 11221 11 12345542110 00 22 37876 5554
Q ss_pred cccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEE
Q 008152 480 LGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHY 559 (576)
Q Consensus 480 ~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~i 559 (576)
|+||++.+|.+. +..+. .| +|+| +.+++....|.+++++||++|++|+++..+.. ... .|...|++.++
T Consensus 319 --glerL~~~l~~~--~~~~~--~~-~v~v-~~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~-~~~--~~~~~~~~~~~ 387 (400)
T 3od1_A 319 --RIDLLVEALNGE--IISNG--HE-QTCI-LFSNERRFEAIELARKKRANGEAVVLQDLAGV-TDV--DAMSSNYQDVI 387 (400)
T ss_dssp --EHHHHHHHHCC----------CC-CEEE-EECGGGHHHHHHHHHHHHTTTCCEEEEEGGGC-SCH--HHHHTTSSEEE
T ss_pred --eHHHHHHHHHhc--CCCCC--CC-eEEE-EECcHHHHHHHHHHHHHHHCCCEEEEEecCCh-hHH--HHHHcCCCEEE
Confidence 799999777653 23321 12 3654 57777888999999999999999999975422 111 77788998887
Q ss_pred Eec
Q 008152 560 FYC 562 (576)
Q Consensus 560 IiG 562 (576)
++.
T Consensus 388 ~~~ 390 (400)
T 3od1_A 388 YCI 390 (400)
T ss_dssp EEC
T ss_pred EEe
Confidence 664
No 42
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.43 E-value=1e-13 Score=151.48 Aligned_cols=182 Identities=16% Similarity=0.183 Sum_probs=116.6
Q ss_pred ceeecCCCCCCCceeEeccccCChhhhhhhhhcCCeeeee-eccceeccccCCCccceecccccccCeeEEcCchhHHHH
Q 008152 283 SAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDE 361 (576)
Q Consensus 283 ~g~~L~~p~~~~lqRiyg~~fp~~~~L~~s~relpl~l~~-vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e 361 (576)
..++|++.+...+.+++ . .-..+|+++|+++++ +|.+||+| .|...|++|+|||+|.|+|+||+++++.++
T Consensus 317 ~~l~LrPt~e~~i~~~f----~---~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~s~ee 388 (522)
T 2cja_A 317 PIGGMCYAQCPPFWMYV----A---GETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKC 388 (522)
T ss_dssp CCEEECSSSSGGGGGGT----T---TCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEHHHHHHH
T ss_pred CcEEEccCCcHHHHHHH----H---hcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeChHHHHHH
Confidence 34566655544444332 1 112367899999999 99999999 777789999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHhCCeEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEec----
Q 008152 362 VRGVL-EFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSD---- 436 (576)
Q Consensus 362 ~~~~l-~~~~~i~~~lG~~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d---- 436 (576)
+.+++ .....+++.||++ .+.+...+ .++|+... ..+ ++ ..+ ..+.|+++.-
T Consensus 389 ~ee~i~~~~~~~l~~LGLp-~v~~~~D~-f~~a~~G~-------~G~-~q--------~~a-----~~k~DiE~~~P~~~ 445 (522)
T 2cja_A 389 AEELHDRYMHIFNDILDIE-WRKARVTP-WFMAQEGL-------LGL-AE--------ENT-----VGTTDYEACLPYRG 445 (522)
T ss_dssp HHHHHHHHHHHHHHTSCCC-EEEEEC---------------------------------CC-----CEEEEEEECCGGGC
T ss_pred HHHHHHHHHHHHHHHcCCC-EEeeccCC-cccccccc-------ccc-hh--------ccc-----cceEEEEEeccccc
Confidence 99999 8889999999999 55543211 11110000 000 00 011 1234554432
Q ss_pred cccCceecceee--ecccCCceeeeEEeecCCCcccccEEEEecccc-cHHHHHHHHHHhcCC---CCCCCCCC
Q 008152 437 ALKRKFQCATLQ--LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG-SVERMFAILLEHYKG---KWPFWLSP 504 (576)
Q Consensus 437 ~~gr~~~~~tiq--ld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~G-giERlia~L~E~~~g---~~P~~laP 504 (576)
..|+..+|+++. .|+ .+.+|++.|. + | ..+ |..+.| |++|++++|+|+++. .||..+.|
T Consensus 446 g~~~~~eisS~s~~~d~-qarr~~Ir~~--~-~--~~v---ht~~~Glgv~Rli~AlLE~~~~~~~~wP~~lr~ 510 (522)
T 2cja_A 446 PDGEWLEFQNVSINGDK-YPKGFNVKLQ--S-G--DEL---WSGCSGVGLERWAAVFLAQKGLDPANWPEEFRN 510 (522)
T ss_dssp TTCCCEEEEEEEECTTH-HHHHHTCEET--T-C--CCE---EEEEEEEEHHHHHHHHHHHHCSCGGGSCHHHHH
T ss_pred CCCcEEEEeeechhhhh-cccccceEcC--C-C--CEE---EEeccCcHHHHHHHHHHHHcCCCCCcCchHHHH
Confidence 245556666653 343 4678998874 2 3 233 334444 799999999999863 67765444
No 43
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.28 E-value=3.7e-12 Score=113.90 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=58.7
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCC--CCcHHHHHHHhHhcCCceEEEecc
Q 008152 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKVTTSNFEIKNPHYFYCP 563 (576)
Q Consensus 503 aP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~--~~slgkkir~A~~~g~p~~iIiGp 563 (576)
-|.||.|+|+++++.+||.+|+++|+++|++|++|.+ +.+||+|||+|++.++||++|||+
T Consensus 7 ~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 7 GPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp CCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH
T ss_pred CCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec
Confidence 5899999999999999999999999999999999997 899999999999999999999986
No 44
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.14 E-value=7.2e-11 Score=95.26 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=61.5
Q ss_pred CeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChh
Q 008152 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDE 149 (576)
Q Consensus 83 ~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~e 149 (576)
.|+|++|||+.+++++ |+|+.|+|+.++..+++.+++|+|||+++||+++|+.||.|+|+++++.+
T Consensus 2 ~i~i~~p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp CEEEECTTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCCC
T ss_pred eEEEEcCCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCCc
Confidence 5899999999999998 99999999999888888999999999999999999999999999998753
No 45
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.11 E-value=1.7e-10 Score=119.00 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=64.4
Q ss_pred cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEcc
Q 008152 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLST 386 (576)
Q Consensus 315 elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lst 386 (576)
+.|+++..+|.+||+|.+ .||+|+++|+|.|+++||+++++.+|..++++.+..+|+.|||+|++.+.+
T Consensus 166 ~~plr~~~~g~CFR~EaS---~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~LgLpyrv~~~~ 234 (346)
T 3mf2_A 166 KGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYAS 234 (346)
T ss_dssp TTCEEEEEEEEEECCCCC---SSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred ccCeEEEEECCccCCcCC---CCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 448999999999999995 599999999999999999999999999999999999999999999888764
No 46
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.94 E-value=1.5e-09 Score=88.85 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChh
Q 008152 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDE 149 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~e 149 (576)
+.|.|+.|+|..+++++ |+|+.|+|..++...++.+++|+|||++++|++||++++.||+++++.-+
T Consensus 6 ~~i~v~tP~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp CEEEEECTTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC---
T ss_pred ceEEEECCCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCccc
Confidence 56999999999999999 99999999999999999999999999999999999999999999987654
No 47
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=98.89 E-value=7.1e-10 Score=112.50 Aligned_cols=89 Identities=13% Similarity=0.010 Sum_probs=76.1
Q ss_pred hhc-CCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC--
Q 008152 313 FAE-LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP-- 388 (576)
Q Consensus 313 ~re-lpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~-- 388 (576)
+++ +|+|++++|.+||+|+++. |||+|+|+|+||.+++..| ++++.++.++|+.||++ +.+.+|+++
T Consensus 65 ~~~~~p~R~~y~g~vfR~e~~~~-------Ref~Q~g~ei~g~~~~~~D--aEvi~l~~~~l~~lgl~~~~i~l~~~~~~ 135 (275)
T 1usy_A 65 YSPDSQIKVWYADFVYRYSGSDL-------VAEYQLGLEKVPRNSLDDS--LEVLEIIVESASEFFEGPVIVEIGHTGVY 135 (275)
T ss_dssp CTTCCCEEEECCEEEEEEETTEE-------EEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHHCCSCEEEEEEETTHH
T ss_pred cCCCCceEEEEeceEEecCCCCC-------CeeeEeCEEEecCCCchhH--HHHHHHHHHHHHHcCCCCeEEEeCCHHHH
Confidence 557 8999999999999998873 9999999999999988776 88999999999999997 999999986
Q ss_pred CccCCChHHHHHHHHHHHHHHHHc
Q 008152 389 EKYLGDLATWEKAEAALTEALNEF 412 (576)
Q Consensus 389 ~~~~G~~~~~~~a~~~L~~~l~~~ 412 (576)
++.++. .|+.++..|.++|++.
T Consensus 136 ~~~~~~--~~~~~~~~l~~~l~~~ 157 (275)
T 1usy_A 136 EDLLKE--IPKDLHEKVLNLIDTK 157 (275)
T ss_dssp HHHHTT--SCGGGHHHHHHHHHTT
T ss_pred HHHHHh--CCHHHHHHHHHHHHcc
Confidence 444543 6777777888887654
No 48
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.47 E-value=1.1e-07 Score=99.44 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=56.3
Q ss_pred hhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccC
Q 008152 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (576)
Q Consensus 313 ~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr 387 (576)
++++|+|++++|.+||+|+.+ .| |.|||+|+|+|+||.++...| ++++.++.++|+.||++ +.+.+|++
T Consensus 113 ~~~~P~rl~y~g~vfR~e~p~--~g--R~REF~Q~g~ei~g~~~~~aD--aEvi~l~~~~l~~lgl~~~~i~l~~~ 182 (344)
T 1z7m_A 113 KDSTSARYSYFGKIFRKEKRH--KG--RSTENYQIGIELFGESADKSE--LEILSLALQVIEQLGLNKTVFEIGSA 182 (344)
T ss_dssp CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHH--HHHHHHHHHHHHHHTCSSEEEEEEEH
T ss_pred CCCCCeEEEEECcEEccCCCC--CC--CcceeEEEEEEEEcCCCcHHH--HHHHHHHHHHHHHCCCCcEEEEECCH
Confidence 567899999999999999754 34 999999999999999876555 68999999999999997 99999976
No 49
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=98.42 E-value=1.5e-07 Score=99.40 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=57.0
Q ss_pred hcCCeeeeeeccceeccccCCCc--cceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 008152 314 AELPLRLADFGVLHRNEASGALT--GLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~--gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~lstr~ 388 (576)
+++|+|++++|.+||+|++|.+. +.-|.|||+|.|+|+||.+++...+ ++++.++.++|+.||++ +.+.+|++.
T Consensus 114 ~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aD-aEvi~l~~~~l~~lgl~~~~i~l~~~~ 190 (373)
T 3rac_A 114 GRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVD-MDVLRLLHEASAAAGVRHHRIVVSHAR 190 (373)
T ss_dssp TCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHH-HHHHHHHHHHHHHHTCCSCEEEEEETT
T ss_pred CCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHH-HHHHHHHHHHHHHcCCCceEEEecCHH
Confidence 57899999999999999885432 3349999999999999999444444 68999999999999996 999999863
No 50
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=97.09 E-value=0.00051 Score=69.77 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=54.6
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~l 384 (576)
+++|++++++|.+||+|..+. .|.+||+|.+++++|.++++. +.++..++..+++.||++ +.+.-
T Consensus 146 ~~~PlrlfeiG~vFR~E~~~~----~r~~EF~qle~~i~g~~~~~~--f~elkg~le~ll~~LGl~~~~~~~ 211 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKESQGA----QHLNEFTMLNLTELGTPLEER--HQRLEDMARWVLEAAGIREFELVT 211 (288)
T ss_dssp SCSCEEEEEEEEEECSCCSSS----CCCSEEEEEEEEEETCCGGGH--HHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCCEEEEEEeeEEecCCCCC----CcCccEEEEEEEEEcCCchhh--HHHHHHHHHHHHHHcCCCCcEEec
Confidence 578999999999999998653 388999999999999976654 467889999999999994 66543
No 51
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=95.31 E-value=0.026 Score=46.69 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=46.1
Q ss_pred CCeEEEeCCCcEEEeecCC-CCHHHHHhhhccccccceEEEEECCEEeec----cccccCCCcEEEeec
Q 008152 82 DPIKITLPDGSVKEGKRWE-TSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (576)
Q Consensus 82 ~~I~v~l~dg~~~~~~~~~-ttp~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~ve~l~~ 145 (576)
..++|++ +|+.++.+. + +|+.|+.+.+.. ....+++.|||++.+- +++|.+..+|+++.+
T Consensus 19 ~~M~I~v-NGe~~el~~-~~~Tv~dLL~~L~~--~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 19 GRHMLQL-NGKDVKWKK-DTGTIQDLLASYQL--ENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp ---CEEE-TTEEECCSS-SCCBHHHHHHHTTC--TTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred cceEEEE-CCEEEECCC-CCCcHHHHHHHhCC--CCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 4567787 788888877 6 999999998853 3445678899999876 578998889999875
No 52
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.08 E-value=0.015 Score=46.56 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=46.6
Q ss_pred CeEEEeCCCcE---EEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCC
Q 008152 83 PIKITLPDGSV---KEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (576)
Q Consensus 83 ~I~v~l~dg~~---~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~ 147 (576)
+|+|++. |.. ++.+. ++|+.|+.+.+.-. ..-+++.+||+..+.+.+++ +.+|+++.+=+
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~-g~Tv~dLL~~Lgl~--~~~VvV~vNG~~v~~d~~l~-GD~VeIv~~V~ 64 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDD-DGTYADLVRAVDLS--PHEVTVLVDGRPVPEDQSVE-VDRVKVLRLIK 64 (74)
T ss_dssp EEEEECS-SSSEEEEECST-TCSHHHHHHTTCCC--SSCCCEECCCCCCCTTSSSC-CCCEEECSSCS
T ss_pred EEEEEEe-CccceeEEcCC-CCcHHHHHHHcCCC--cceEEEEECCEECCHHHCCC-CCEEEEEEeec
Confidence 4788886 443 66777 89999999998654 33447899999999999997 45999988744
No 53
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=94.74 E-value=0.029 Score=56.69 Aligned_cols=61 Identities=13% Similarity=0.221 Sum_probs=48.8
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL 382 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l 382 (576)
...|++++++|.+||+|..+. .+.+||+|.|+++++.+.. +.++..++..+++.+|+++.+
T Consensus 152 ~~~p~rlfeiG~vFR~E~~~~----~~~~Ef~ql~~~~~g~~~~----f~elkg~le~ll~~lGl~~~~ 212 (290)
T 3qtc_A 152 LPDPIKIFEIGPCYRKESDGK----EHLEEFTMLVFWQMGSGCT----RENLESIITDFLNHLGIDFKI 212 (290)
T ss_dssp SCSSEEEEEEEEEECCCSCSS----SCCSEEEEEEEEEESTTCC----HHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEEcCEEecCCCCC----cCcchheEEEEEEEcCChH----HHHHHHHHHHHHHHcCCCcEE
Confidence 367899999999999996431 2789999999999997643 345778888999999987554
No 54
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=94.28 E-value=0.063 Score=41.65 Aligned_cols=57 Identities=7% Similarity=0.128 Sum_probs=45.5
Q ss_pred EEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeec----cccccCCCcEEEeec
Q 008152 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (576)
Q Consensus 85 ~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~ve~l~~ 145 (576)
+|++ +|+.++.+. ++|+.|+.+.+... ..-++..|||++.+- +++|....+|+++.+
T Consensus 2 ~i~v-Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 2 QILF-NDQAMQCAA-GQTVHELLEQLDQR--QAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp CEEE-SSCEECCCT-TCCHHHHHHHHTCC--CSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred EEEE-CCEEEEcCC-CCcHHHHHHHcCCC--CCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 4666 788888877 89999999988643 445678899999875 688998889999875
No 55
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.19 E-value=0.076 Score=41.79 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=46.0
Q ss_pred CeEEEeCCCcE----EEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeec
Q 008152 83 PIKITLPDGSV----KEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 83 ~I~v~l~dg~~----~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
.++|++ +|+. ++.+. ++|+.|+.+.+... ...+++-+||++.+-+.+|..+.+|+++.+
T Consensus 4 ~m~i~v-Ng~~~~~~~~~~~-~~tv~~Ll~~l~~~--~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTV-ITDDGKKILESGA-PRRIKDVLGELEIP--IETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEE-EETTEEEEEEESS-CCBHHHHHHHTTCC--TTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred eEEEEE-eCccCceeEECCC-CCcHHHHHHHhCCC--CCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 367777 4444 66666 79999999988543 344567899999999999999889999875
No 56
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=93.59 E-value=0.074 Score=42.96 Aligned_cols=59 Identities=10% Similarity=0.234 Sum_probs=45.8
Q ss_pred eEEEeCCCcEEEee--cCCCCHHHHHhhhccccccceEEEEECCEEeecc----ccccCCCcEEEeec
Q 008152 84 IKITLPDGSVKEGK--RWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (576)
Q Consensus 84 I~v~l~dg~~~~~~--~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~----~~l~~d~~ve~l~~ 145 (576)
|+|++ +|+.++.+ . ++|+.|+...++-.. ..-+++.|||++.+-. ++|.++.+||++.+
T Consensus 1 M~I~v-NGe~~e~~~~~-~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 1 MNLTV-NGKPSTVDGAE-SLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp CEEEE-TTEEEECSSCS-CEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred CEEEE-CCEEEEcCCCC-CCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEEee
Confidence 36777 68888877 6 799999999876331 3445688999998765 78998889999886
No 57
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.41 E-value=0.19 Score=38.63 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=43.9
Q ss_pred EEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeecc----ccccCCCcEEEeec
Q 008152 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (576)
Q Consensus 86 v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~----~~l~~d~~ve~l~~ 145 (576)
|++ +|+.++. . ++|+.|+.+.+... ...++..|||++.+-. ++|....+|+++.+
T Consensus 2 i~v-Ng~~~~~-~-~~tv~~ll~~l~~~--~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 2 VWL-NGEPRPL-E-GKTLKEVLEEMGVE--LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EEE-TTEEECC-T-TCCHHHHHHHHTBC--GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEE-CCEEEEc-C-CCcHHHHHHHcCCC--CCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 455 7888887 6 89999999988643 3456778999999865 89999889999875
No 58
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=93.32 E-value=0.08 Score=42.18 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=44.6
Q ss_pred EEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeec----cccccCCCcEEEeecC
Q 008152 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTFD 146 (576)
Q Consensus 85 ~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL----~~~l~~d~~ve~l~~~ 146 (576)
+|++ +|+.++. . ++|+.|+...+.-. ..-+++.+||++.+- +++|.++.+|+++.+-
T Consensus 2 ~I~v-NG~~~e~-~-~~Tl~~LL~~l~~~--~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 2 LVTI-NGEQREV-Q-SASVAALMTELDCT--GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp CEEE-TTEEECC-C-CSBHHHHHHHTTCC--SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCC
T ss_pred EEEE-CCEEEEc-C-CCcHHHHHHHcCCC--CCcEEEEECCEECChHHcCcccCCCCCEEEEEccc
Confidence 4666 6778877 6 89999999987643 445678899999876 4789888899999863
No 59
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=88.87 E-value=0.26 Score=49.85 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=29.2
Q ss_pred Ceeeeeeccceeccc--c-CCCccceecc-cccccCeeEEcCc
Q 008152 317 PLRLADFGVLHRNEA--S-GALTGLTRVR-RFQQDDAHIFCRE 355 (576)
Q Consensus 317 pl~l~~vg~l~R~e~--~-g~l~gLiRvr-eF~q~da~iF~~~ 355 (576)
+.+++++|.+||+|. + +. |-+ ||+|.|++..+.+
T Consensus 88 ~~rvf~ig~~FR~E~pq~~~~-----RH~~EFtqle~e~~~~~ 125 (294)
T 1nnh_A 88 LKKIFVLSPNIRLESRQKDDG-----RHAYEFTQLDFEVERAK 125 (294)
T ss_dssp CCEEEEEEEEECCCCGGGCSS-----SCCSEEEEEEEEEETCC
T ss_pred ccceEEEEccEeCCCCCCCCC-----ccccceeEEEEEecCCC
Confidence 679999999999998 4 22 666 9999999999876
No 60
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=85.91 E-value=2 Score=35.65 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=44.3
Q ss_pred EEe-ecCCCCHHHHHhhhccccccceEEEEE-------CCEEeeccccccCCCcEEEeecC
Q 008152 94 KEG-KRWETSPMDIAQGISKSLAANALISMV-------NGVLWDMTRPLEADCDLKLFTFD 146 (576)
Q Consensus 94 ~~~-~~~~ttp~dia~~i~~~~~~~~v~a~V-------ng~l~dL~~~l~~d~~ve~l~~~ 146 (576)
+.. +. |+|+.|+|..|.....+....|.| |++-+.+++.|++..-|++++-.
T Consensus 29 viL~~~-GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 29 VVLPYS-RTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKS 88 (93)
T ss_dssp EEEETT-SCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECC
T ss_pred EEEecC-CCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCC
Confidence 555 55 999999999999999999888776 89999999999977678888653
No 61
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=85.32 E-value=0.43 Score=38.06 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=41.6
Q ss_pred CCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeec
Q 008152 90 DGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 90 dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
++..++.+. ++|+.|+.+.+... ...+++.|||++.+.+.+|..+.+|+++..
T Consensus 21 n~~~~~~~~-~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 21 IEKEIEWRE-GMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCCCCS-SCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCSCC
T ss_pred CCEEEECCC-CCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEEcc
Confidence 455566666 78999999987643 344577899999999999999889998754
No 62
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=81.13 E-value=1.1 Score=48.63 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=34.8
Q ss_pred CeeeeeeccceeccccCCCccceecc-cccccCeeE-EcCc-hhHHHHHHHHHH
Q 008152 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHI-FCRE-SQIKDEVRGVLE 367 (576)
Q Consensus 317 pl~l~~vg~l~R~e~~g~l~gLiRvr-eF~q~da~i-F~~~-~~~~~e~~~~l~ 367 (576)
+-+++++|..||+|.+.. + |-+ ||+|.|+|. |+.+ +++.+...+++.
T Consensus 244 ~~rvy~ig~~FR~E~~~~--~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~ 293 (487)
T 1eov_A 244 FERVYEIGPVFRAENSNT--H--RHMTEFTGLDMEMAFEEHYHEVLDTLSELFV 293 (487)
T ss_dssp CCEEEEEEEEECCCCCCC--T--TCCSEEEEEEEEEECSSCTHHHHHHHHHHHH
T ss_pred CCceEEEeccEecCCCCC--C--ccchhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 469999999999998631 2 666 999999987 8865 666555444443
No 63
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=81.07 E-value=1.3 Score=36.91 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=39.0
Q ss_pred EEeecCCCCHHHHHhhhccccc-------------cceEEEEECCEEeeccccccCCCcEEEeec
Q 008152 94 KEGKRWETSPMDIAQGISKSLA-------------ANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 94 ~~~~~~~ttp~dia~~i~~~~~-------------~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
++.+. ++|+.|+...+...++ .+.++..|||+.++++++|..+.+|.|+..
T Consensus 31 ~e~~~-~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 31 IELPE-GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp EEECT-TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEESC
T ss_pred EECCC-CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEECC
Confidence 33444 7899999888765421 245778899999999999999989998753
No 64
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=75.80 E-value=2.1 Score=46.31 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=36.8
Q ss_pred CeeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHHHHHHHHH
Q 008152 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYR 374 (576)
Q Consensus 317 pl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~ 374 (576)
.-+++++|..||+|..+. -+..||+|.|+|.-..+ +++.+... +++..+++
T Consensus 242 ~~rVyeig~~FR~E~~~~----rH~pEFT~lE~e~af~d~~dlm~l~E---~ll~~l~~ 293 (493)
T 3a74_A 242 LEKVYEIGRVFRNEGIST----RHNPEFTMLELYEAYADFRDIMKLTE---NLIAHIAT 293 (493)
T ss_dssp CCEEEEEEEEECCCCCBT----TBCSEEEEEEEEEETCCHHHHHHHHH---HHHHHHHH
T ss_pred cCceEEECccccCCCCCc----ccCCceeEEEEEecCCCHHHHHHHHH---HHHHHHHH
Confidence 358999999999998642 38999999999997766 44554433 34444444
No 65
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=75.71 E-value=2 Score=44.37 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=34.2
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLE 367 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~ 367 (576)
+++++|..||+|.++. . +..||+|.|+|.-..+ +++.+.+.+++.
T Consensus 111 rvyqIg~~FR~E~~~~--r--H~pEFt~lE~e~af~d~~d~m~~~E~li~ 156 (345)
T 3a5y_A 111 PVFQLCRSFRNEEMGR--Y--HNPEFTMLEWYRPHYDMYRLMNEVDDLLQ 156 (345)
T ss_dssp SEEEEEEEECCCCCBT--T--BCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred cEEEEEcceeCCCCcc--c--ccchhheeeeeeeCCCHHHHHHHHHHHHH
Confidence 8999999999998632 2 7999999999986655 556655444443
No 66
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=75.04 E-value=2 Score=45.57 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=25.0
Q ss_pred eeeeeeccceeccccCCCccceecc-cccccCeeEEcC-c-hhHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCR-E-SQIKDEVRGVL 366 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvr-eF~q~da~iF~~-~-~~~~~e~~~~l 366 (576)
-+++++|.+||+|.... + |-+ ||+|.|+|..+. + +++.+...+++
T Consensus 191 ~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~~d~~dlm~l~e~ll 238 (422)
T 1n9w_A 191 ERVYEVAPVWRMEEHHT--S--RHLNEYLSLDVEMGFIADEEDLMRLEEALL 238 (422)
T ss_dssp SEEEEEEEC-----------------CCEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred CceeEEeCceECCCCCC--C--cccceeEEeeeeeeCCCCHHHHHHHHHHHH
Confidence 59999999999997521 1 666 999999999887 4 44444433333
No 67
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=74.79 E-value=8.3 Score=30.30 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCCHHHHHhhhcccc-------ccceEEEEECCEEeeccccccCCCcEEEee
Q 008152 100 ETSPMDIAQGISKSL-------AANALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 100 ~ttp~dia~~i~~~~-------~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
++|+.|+...+...+ ...-+++-|||+..+++.+|.++.+|.++.
T Consensus 25 ~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 25 FPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp CSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEEC
T ss_pred CCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeC
Confidence 778999888876432 122356889999999999999988999875
No 68
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=74.76 E-value=2.4 Score=45.02 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=32.6
Q ss_pred CeeeeeeccceeccccCCCccceecc-cccccCeeEEcCc-hhHHHHHHH
Q 008152 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRE-SQIKDEVRG 364 (576)
Q Consensus 317 pl~l~~vg~l~R~e~~g~l~gLiRvr-eF~q~da~iF~~~-~~~~~e~~~ 364 (576)
+-+++++|.+||+|.... + |-+ ||+|.|+|....+ +++.+...+
T Consensus 199 ~~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~~~~dlm~~~e~ 244 (429)
T 1wyd_A 199 VERVFEVAPAWRAEESDT--P--FHLAEFISMDVEMAFADYNDVMQLLEK 244 (429)
T ss_dssp HSEEEEEEEEECCCCCCS--S--SCCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred cCceEEEcccccccCCcc--c--cccceeeEeeeeecCCCHHHHHHHHHH
Confidence 569999999999997521 1 665 9999999998876 444444333
No 69
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=74.42 E-value=2.5 Score=44.94 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=32.1
Q ss_pred CeeeeeeccceeccccCCCccceecc-cccccCeeEEcCc-hhHHHHHH
Q 008152 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRE-SQIKDEVR 363 (576)
Q Consensus 317 pl~l~~vg~l~R~e~~g~l~gLiRvr-eF~q~da~iF~~~-~~~~~e~~ 363 (576)
+.+++++|.+||+|.... + |-+ ||+|.|+|..+.+ +++.+...
T Consensus 200 ~~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~~~~dlm~~~e 244 (434)
T 1x54_A 200 LEKVWSLTPSFRAEKSRT--R--RHLTEFWHLELEAAWMDLWDIMKVEE 244 (434)
T ss_dssp HSEEEEEEEEECCCCCCC--S--SCCSEEEEEEEEEETCCHHHHHHHHH
T ss_pred ccceEEEecceecCCCCC--c--ccccEEEEeeEEEcCCCHHHHHHHHH
Confidence 579999999999997521 1 666 9999999998876 44444333
No 70
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=73.80 E-value=11 Score=37.15 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=56.4
Q ss_pred ccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC------------CChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 471 RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS------------EKSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 471 ~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~------------~~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
+|+-++++. .+-|+.+.++ +.|-||.++|-. ....+...++.++|+++||+|.+-.
T Consensus 95 t~lNlEma~---t~emi~ial~---------~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFI 162 (278)
T 3gk0_A 95 TRMNLECAV---TPEMLDIACE---------IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFI 162 (278)
T ss_dssp SCEEEEECS---SHHHHHHHHH---------HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEeecCC---CHHHHHHHHH---------cCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEe
Confidence 555566663 6778888887 479999999975 2346777888899999999888665
Q ss_pred CCCcHHHHHHHhHhcCCceE
Q 008152 539 TDRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 539 ~~~slgkkir~A~~~g~p~~ 558 (576)
. .-..++..|.+.|++++
T Consensus 163 D--pd~~qI~aA~~~GAd~I 180 (278)
T 3gk0_A 163 D--PDEAQIRAAHETGAPVI 180 (278)
T ss_dssp C--SCHHHHHHHHHHTCSEE
T ss_pred C--CCHHHHHHHHHhCcCEE
Confidence 2 33458999999999876
No 71
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=73.34 E-value=2.7 Score=45.58 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=35.9
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYR 374 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~ 374 (576)
=++|++|..||+|..+. .+..||+|.|+|.-..+ +++.+...+ ++..+++
T Consensus 252 ~rVyeIg~~FR~E~~~~----rH~pEFt~lE~e~af~d~~dlm~l~E~---li~~~~~ 302 (504)
T 1e1o_A 252 ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTES---LFRTLAQ 302 (504)
T ss_dssp CEEEEEEEEECCCCCCC-----CCSEEEEEEEEEESCCHHHHHHHHHH---HHHHHHH
T ss_pred CcEEEEcccccCCCCCc----cccCceeeeeeeecCCCHHHHHHHHHH---HHHHHHH
Confidence 48999999999998652 38999999999997766 555554333 3444443
No 72
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=72.54 E-value=2.7 Score=32.98 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=35.2
Q ss_pred CCCHHHHHhhhcccccc-ceE--EEEECCEEeeccccccCCCcEEEeec
Q 008152 100 ETSPMDIAQGISKSLAA-NAL--ISMVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~~-~~v--~a~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
++|+.|+...+...++. .-+ +.-|||+..+.+.+|..+.+|+++..
T Consensus 25 ~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 25 ALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp CEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEECS
T ss_pred CCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEECC
Confidence 67888988877654321 223 67799999999999999889998764
No 73
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=72.06 E-value=5.5 Score=32.03 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=38.2
Q ss_pred EEEeecCCCCHHHHHhhhccccc-------------cceEEEEECCEEee----ccccccCCCcEEEeec
Q 008152 93 VKEGKRWETSPMDIAQGISKSLA-------------ANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (576)
Q Consensus 93 ~~~~~~~~ttp~dia~~i~~~~~-------------~~~v~a~Vng~l~d----L~~~l~~d~~ve~l~~ 145 (576)
..+.+. ++|+.|+...+...++ .+.+++.|||+.++ ++.+|..+.+|+++..
T Consensus 18 ~~~~~~-~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNG-ISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESS-CCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEcCC-CCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 344444 7899999888765431 13467889999986 7999998889998753
No 74
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=72.01 E-value=7.1 Score=38.29 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=56.0
Q ss_pred cccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC----------hHHHHHHHHHHHHhCCcEEEEeCC
Q 008152 470 ERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEK----------SQPYALQVRDHIYRAGYYVDVDTT 539 (576)
Q Consensus 470 ~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~----------~~~~a~~i~~~Lr~~Gi~v~vD~~ 539 (576)
.+|+-++++. .+-|+.+.++ +.|.||.++|-..+ ..+.-..+.++|+++||+|.+-..
T Consensus 65 ~~~lNlE~a~---t~emi~ial~---------~kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID 132 (260)
T 3o6c_A 65 KSPVNLECAL---NDEILNLALK---------LKPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN 132 (260)
T ss_dssp SSCEEEEECS---CHHHHHHHHH---------HCCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEeecCC---CHHHHHHHHH---------cCCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3566667774 6778888887 37999999997632 334557777899999999986652
Q ss_pred CCcHHHHHHHhHhcCCceE
Q 008152 540 DRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 540 ~~slgkkir~A~~~g~p~~ 558 (576)
.-..++..|.+.|++++
T Consensus 133 --pd~~qi~aA~~~GAd~I 149 (260)
T 3o6c_A 133 --PSLEDIEKSKILKAQFI 149 (260)
T ss_dssp --SCHHHHHHHHHTTCSEE
T ss_pred --CCHHHHHHHHHhCCCEE
Confidence 33458999999999875
No 75
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=71.93 E-value=17 Score=35.27 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=56.6
Q ss_pred ccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 471 RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 471 ~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~------------~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
+|+-++++. .+-|+.+.++ +.|-||+++|-.. ...+.-..+.++|+++||+|.+-.
T Consensus 67 ~~lNlE~a~---t~emi~ia~~---------~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFI 134 (243)
T 1m5w_A 67 TRMNLEMAV---TEEMLAIAVE---------TKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFI 134 (243)
T ss_dssp SEEEEEECS---SHHHHHHHHH---------HCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEeccCC---CHHHHHHHHH---------cCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEe
Confidence 455556663 5678888887 3799999999751 346777888999999999998765
Q ss_pred CCCcHHHHHHHhHhcCCceE
Q 008152 539 TDRKIQKKVTTSNFEIKNPH 558 (576)
Q Consensus 539 ~~~slgkkir~A~~~g~p~~ 558 (576)
. .-..++..|.+.|++++
T Consensus 135 D--pd~~qi~aA~~~GA~~I 152 (243)
T 1m5w_A 135 D--ADEEQIKAAAEVGAPFI 152 (243)
T ss_dssp C--SCHHHHHHHHHTTCSEE
T ss_pred C--CCHHHHHHHHHhCcCEE
Confidence 2 23468999999999876
No 76
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=69.63 E-value=5.2 Score=32.25 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCCHHHHHhhhcccccc-------------ceEEEEECCEEeeccccccCCCcEEEee
Q 008152 100 ETSPMDIAQGISKSLAA-------------NALISMVNGVLWDMTRPLEADCDLKLFT 144 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~~-------------~~v~a~Vng~l~dL~~~l~~d~~ve~l~ 144 (576)
++|+.|+...+...++. +.+..-|||+.++.+++|..+.+|.|+.
T Consensus 27 ~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 27 DATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp TCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred CCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEEC
Confidence 67898988877654321 1267779999999999999988999874
No 77
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=68.59 E-value=6.4 Score=32.06 Aligned_cols=45 Identities=4% Similarity=0.041 Sum_probs=35.1
Q ss_pred CCCHHHHHhhhccccc-------c--------ceEEEEECCEEee----ccccccCCCcEEEee
Q 008152 100 ETSPMDIAQGISKSLA-------A--------NALISMVNGVLWD----MTRPLEADCDLKLFT 144 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~-------~--------~~v~a~Vng~l~d----L~~~l~~d~~ve~l~ 144 (576)
++|+.|+...+...++ . +.+...|||+.++ ++.+|..+.+|.|+.
T Consensus 25 ~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 25 GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 7899999888765432 1 1477889999997 799999888898875
No 78
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=62.13 E-value=5.8 Score=44.04 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=33.2
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
++|++|..||+|.++. . |..||+|.|+|.-..+ +++.+.+.+++
T Consensus 218 rvfqi~~~FR~E~~~t--~--r~pEFt~lE~e~af~d~~d~m~~~E~l~ 262 (617)
T 4ah6_A 218 RYFQVARCYRDEGSRP--D--RQPEFTQIDIEMSFVDQTGIQSLIEGLL 262 (617)
T ss_dssp EEEEEEEEECCCSSCS--S--SCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred cEEEEEhheecccCCC--C--cCcceecceeeecCCCHHHHHHHHHHHH
Confidence 8999999999997653 2 7889999999984444 66666544444
No 79
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=60.86 E-value=26 Score=31.81 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 008152 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (576)
Q Consensus 153 vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~iI 213 (576)
.=-||+-|+++.-+++....-+-+|| .+.-.|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 52 ~~iHTlEHL~A~~lRnh~~~iId~sP-MGCrTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 109 (160)
T 1j6x_A 52 PSLHSLEHLVAEIIRNHANYVVDWSP-MGCQTGFYLTVL--N-HDNYTEILEVLEKTMQDVL 109 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCSCEEEEEE-CTTSSEEEEEEE--S-CCCHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHhhCCCCeEEECC-cCcchhcEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 44799999999999998765566666 443369997664 2 355555 456777777664
No 80
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=60.57 E-value=6.3 Score=41.83 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=32.6
Q ss_pred eeeeeccceecccc-CCCcccee-cccccccCeeEEcCc-hhHHHHHHHHHH
Q 008152 319 RLADFGVLHRNEAS-GALTGLTR-VRRFQQDDAHIFCRE-SQIKDEVRGVLE 367 (576)
Q Consensus 319 ~l~~vg~l~R~e~~-g~l~gLiR-vreF~q~da~iF~~~-~~~~~e~~~~l~ 367 (576)
+++++|..||+|.+ +. | ..||+|.|+|.-..+ +++.+...+++.
T Consensus 199 rvfeIg~~FR~E~~~t~-----RH~~EFT~lE~e~af~d~~d~m~~~E~li~ 245 (435)
T 2xgt_A 199 DVFCIAQSYRAEKSRTR-----RHLAEYAHVEAECPFITLDDLMEKIEELVC 245 (435)
T ss_dssp SEEEEEEEECCCSSCCT-----TCCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ceEEEecceecCCCCcc-----ccccceeEEEEEEecCCHHHHHHHHHHHHH
Confidence 89999999999974 32 4 449999999996665 566665554443
No 81
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=60.28 E-value=4.7 Score=33.71 Aligned_cols=57 Identities=4% Similarity=-0.133 Sum_probs=40.3
Q ss_pred EEeecCCCCHHHHHhhhcccccc-----ceEEEEECCEEeeccccccCCCcEEEeecCChhhh
Q 008152 94 KEGKRWETSPMDIAQGISKSLAA-----NALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGR 151 (576)
Q Consensus 94 ~~~~~~~ttp~dia~~i~~~~~~-----~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~ 151 (576)
.+.+. |+|+.|+....+..... ..++.-|||+..+++++|.....||++.+=..|.+
T Consensus 30 ~~v~~-g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyrpl~~DPk 91 (97)
T 2hj1_A 30 FQVDE-GITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLADPK 91 (97)
T ss_dssp EEEET-TCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECCCCC----
T ss_pred EEcCC-CCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEecccCCHH
Confidence 44556 99999999887642221 13677799999999999999889998765444433
No 82
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=60.17 E-value=8.6 Score=41.61 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=44.3
Q ss_pred cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 008152 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (576)
Q Consensus 315 elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~l 384 (576)
..|++++++|.+||++.... ..+.+|+|.+.-+.+.+-. +..+..++..+++.||+. ++++-
T Consensus 345 ~~PiriFeiGrVFR~d~~Da----tHlpeFhQlegl~~~~~v~----f~dLKg~Le~~l~~lG~~~~rfrp 407 (508)
T 3l4g_A 345 FTPVKYFSIDRVFRNETLDA----THLAEFHQIEGVVADHGLT----LGHLMGVLREFFTKLGITQLRFKP 407 (508)
T ss_dssp CCCEEEEEEEEEECCSCCCS----SSCSEEEEEEEEEEEESCC----HHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred CCCceEEEEccEEecCCCCC----CcCCeEEEEEEEEECCCCC----HHHHHHHHHHHHHHcCCcceEeec
Confidence 47899999999999986432 3678899999876553322 234667778888999974 55444
No 83
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=56.09 E-value=8.6 Score=41.83 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=33.4
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
+++++|..||+|.++. ....||+|.|+|.-..+ +++.+...+++
T Consensus 246 rVyeig~~FR~E~~~t----rH~pEFtmlE~e~af~d~~dlm~l~E~li 290 (521)
T 3bju_A 246 RVYEIGRQFRNEGIDL----THNPEFTTCEFYMAYADYHDLMEITEKMV 290 (521)
T ss_dssp EEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ceEEEEcceeCCCCCC----ccchhhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 8999999999997653 37899999999986655 55555444333
No 84
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=55.36 E-value=34 Score=31.16 Aligned_cols=57 Identities=14% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 008152 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (576)
Q Consensus 153 vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t~ed-l~~Ie~~m~~iI 213 (576)
.=-||+-|+++.-+++....-+-+|| .+.-.|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 54 ~~iHTlEHL~A~~lRnh~~~iId~sP-MGCrTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 111 (166)
T 1vje_A 54 AAIHTLEHLLAGYMRDHLEGVVDVSP-MGARTGMYMAVI--G-EPDEQGVMKAFEAALKDTA 111 (166)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEE-CTTSSEEEEEEE--S-SCCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCCCeEEECC-cccccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 44799999999999998765566666 443369997664 2 355555 455777777765
No 85
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=53.49 E-value=18 Score=29.83 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=42.2
Q ss_pred CCeEEEeCC------C-cEEEeecCCCCHHHHHhhhccccc---cc---------eE-------EEEECCEEe----ecc
Q 008152 82 DPIKITLPD------G-SVKEGKRWETSPMDIAQGISKSLA---AN---------AL-------ISMVNGVLW----DMT 131 (576)
Q Consensus 82 ~~I~v~l~d------g-~~~~~~~~~ttp~dia~~i~~~~~---~~---------~v-------~a~Vng~l~----dL~ 131 (576)
.+|+|.+.. | +..+.. ++|+.|+...+...++ .. -+ +..|||+.+ +++
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~--~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~ 81 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS--GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLE 81 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE--CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTT
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe--CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCC
Confidence 346666543 2 234444 6899999888764421 11 13 778999988 789
Q ss_pred ccccCCCcEEEeec
Q 008152 132 RPLEADCDLKLFTF 145 (576)
Q Consensus 132 ~~l~~d~~ve~l~~ 145 (576)
++|.++.+|.++..
T Consensus 82 ~~L~~gD~V~i~pp 95 (99)
T 2l52_A 82 TLLKDSDEIGILPP 95 (99)
T ss_dssp SCCCTTEEEEEECC
T ss_pred CCCCCCCEEEEECC
Confidence 99999889998753
No 86
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=51.98 E-value=12 Score=41.22 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=34.7
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYR 374 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~~~~~i~~ 374 (576)
++|++|..||+|..+. . |--||+|.|+|.=..+ +++.+.+.+ ++..+++
T Consensus 214 rvfqI~~~FR~E~~~~--~--r~pEFT~lE~e~af~d~~dvm~~~E~---li~~i~~ 263 (580)
T 1l0w_A 214 RYFQIARCFRDEDLRA--D--RQPDFTQLDLEMSFVEVEDVLELNER---LMAHVFR 263 (580)
T ss_dssp EEEEEEEEECCCCCCS--S--CCSEEEEEEEEEESCCHHHHHHHHHH---HHHHHHH
T ss_pred CeEEEeceeeCCCCCC--C--cCCCccceeeeecCCCHHHHHHHHHH---HHHHHHH
Confidence 8999999999998653 1 5559999999985544 566655444 4444444
No 87
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=50.85 E-value=12 Score=41.28 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=32.5
Q ss_pred eeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHHH
Q 008152 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (576)
Q Consensus 319 ~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l 366 (576)
++|++|..||+|..+. . |--||+|.|+|.=..+ +++.+.+.+++
T Consensus 208 rvfqI~~~FR~E~~~t--~--r~pEFT~lE~e~af~d~~dvm~~~E~li 252 (585)
T 1c0a_A 208 RYYQIVKCFRDEDLRA--D--RQPEFTQIDVETSFMTAPQVREVMEALV 252 (585)
T ss_dssp EEEEEEEEECCCCCBT--T--BCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred ceEEEeceeecCCCCC--C--cCcccceeeeeecCCCHHHHHHHHHHHH
Confidence 8999999999998653 1 5559999999985444 66666544444
No 88
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=50.36 E-value=13 Score=40.38 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=33.0
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeEEcCc-hhHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGV 365 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~ 365 (576)
=++|++|..||+|..+. ....||+|.|+|.-..+ +++.+...++
T Consensus 273 ~rVyeIg~~FR~E~~~~----rH~pEFtmlE~e~af~d~~dlm~l~E~l 317 (529)
T 4ex5_A 273 ERVFEINRNFRNEGVSP----RHNPEFTMMEFYAAYTDYRWLMDFTERL 317 (529)
T ss_dssp SEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHH
T ss_pred CcEEEeehheecCCCCC----CcccHhHhhhhhhhcCCHHHHHHHHHHH
Confidence 38999999999997642 37899999999985555 5555544433
No 89
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=49.97 E-value=12 Score=40.88 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=33.6
Q ss_pred eeeeeeccceeccccCCCccceecccccccCeeE-EcCc-hhHHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRE-SQIKDEVRGVLE 367 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~i-F~~~-~~~~~e~~~~l~ 367 (576)
=+++++|..||+|.+.. . .-..||+|.|+|. |+.+ +++.+.+.+++.
T Consensus 311 ~rVfeI~~~FR~E~~~t--~-RHl~EFtmlE~e~af~~d~~d~m~~~E~li~ 359 (548)
T 3i7f_A 311 RKVFEVGPVFRAENSNT--R-RHLTEFEGLDIEMEIVENYHECIDVMEKLFT 359 (548)
T ss_dssp CEEEEEEEECCCSCCCS--S-SCCSCEEEEEEEEECSSCTHHHHHHHHHHHH
T ss_pred CcEEEEeeeEecCCCCC--C-CcchhhhchhhhhhhhcCHHHHHHHHHHHHH
Confidence 48999999999998631 0 0267999999995 8754 666665554443
No 90
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=49.16 E-value=21 Score=38.82 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=46.4
Q ss_pred hcCCeeeeeeccceecccc-CCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCe-EEEEEc
Q 008152 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~-g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~-~~l~ls 385 (576)
+..|++++++|.+||.+.. .. .+.++|+|.++-+.+.+... ..+...+..+++.||+. ++++-+
T Consensus 202 ~~~pvrLFEIG~VFr~d~~~d~----th~~Ef~qLagli~G~~vdf----~dLKgilE~LL~~LGi~~~r~~~~ 267 (534)
T 2du3_A 202 LPLPIKLFSIDRCFRREQGEDA----TRLYTYFSASCVLVDEELSV----DDGKAVAEALLRQFGFENFRFRKD 267 (534)
T ss_dssp SCSSEEEEEEEEEECCCTTCSS----SCCSEEEEEEEEEECSSCCH----HHHHHHHHHHHGGGTCCEEEEEEC
T ss_pred CCCCeeEEEEeeEEecCccccc----cccceeeEEEEEEECCCCCH----HHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3678999999999997542 21 15689999999998875332 33667778888889985 655543
No 91
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=45.36 E-value=16 Score=38.94 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=32.8
Q ss_pred eeeeeeccceeccccC-CCccceecccccccCeeEEcCc-hhHHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASG-ALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLE 367 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g-~l~gLiRvreF~q~da~iF~~~-~~~~~e~~~~l~ 367 (576)
=++|++|..||+|.+. . .-..||+|.|+|.-..+ +++.+...+++.
T Consensus 222 ~rVyeig~~FR~E~~~t~----rH~pEFtmlE~e~af~d~~d~m~~~E~li~ 269 (456)
T 3m4p_A 222 GKSFCMLSSYRAEQSRTV----RHLAEYLHLEAELPFISFEDLLNHLEDLVC 269 (456)
T ss_dssp SSEEEEEEEECCCSCCCS----SCCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CcEEEEEhheecCCCCCC----cchHHHHHhHHHHhcCCHHHHHHHHHHHHH
Confidence 3799999999999743 2 03569999999995555 666665554443
No 92
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=45.35 E-value=18 Score=38.41 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=32.6
Q ss_pred eeeeeeccceeccccCCCcccee-cccccccCeeEEcCc--hhHHHHHHHHHH
Q 008152 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRE--SQIKDEVRGVLE 367 (576)
Q Consensus 318 l~l~~vg~l~R~e~~g~l~gLiR-vreF~q~da~iF~~~--~~~~~e~~~~l~ 367 (576)
-+++++|..||+|.+.. + | ..||+|.|+|.-..+ +++.+...+++.
T Consensus 204 ~rvf~i~~~FR~E~~~t--~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li~ 252 (438)
T 3nem_A 204 DRVYEIAPIFRAEEHNT--T--RHLNEAWSIDSEMAFIEDEEEVMSFLERLVA 252 (438)
T ss_dssp CEEEEEEEEECCCSSCC--T--TCCSEEEEEEEEEESCSSHHHHHHHHHHHHH
T ss_pred CceEEEcceEECCCCCC--c--ccccceeeeeeeeccCccHHHHHHHHHHHHH
Confidence 48999999999998641 1 3 469999999985544 555555444443
No 93
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=45.24 E-value=19 Score=27.94 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=41.1
Q ss_pred eEEEeCCC---cEEEeecCCCCHHHHHhhhccccc--c--ceEEEEECCEE-eeccccccCCCcEEEee
Q 008152 84 IKITLPDG---SVKEGKRWETSPMDIAQGISKSLA--A--NALISMVNGVL-WDMTRPLEADCDLKLFT 144 (576)
Q Consensus 84 I~v~l~dg---~~~~~~~~~ttp~dia~~i~~~~~--~--~~v~a~Vng~l-~dL~~~l~~d~~ve~l~ 144 (576)
|+|.+... ...+. . ++|+.|+...+..... . ..++.-|||+. .+.+++|..+.+|.++.
T Consensus 3 v~V~~fa~l~~~~~e~-~-~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 3 VEVRFFGPIKEENFFI-K-ANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp EEEEECTTCCCCCEEE-E-CSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred EEEEEEeecceeEEee-C-CCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 55554321 23444 4 7899999888865321 1 45777899998 68899999888999875
No 94
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=44.84 E-value=54 Score=30.14 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhCC----eEEecCccccCCceEEEEEcCCCCCCHhHH-HHHHHHHHHHh
Q 008152 153 TFWHSSAHILGQAIEQQYGC----KLCIGPCTTRGEGFYYDAFYGDLGLNPDHF-KSIDSEADKAA 213 (576)
Q Consensus 153 vy~hS~ahlL~~A~~~~fg~----~l~ig~si~~~~Gfy~d~~~~~~~~t~edl-~~Ie~~m~~iI 213 (576)
.=-||+-|+++.-+++.... -+-+|| .+.-.|||.-+. + ..+.+++ +.+++.|+.+.
T Consensus 51 ~~iHTlEHL~A~~lRnh~~~~~~~iId~sP-MGCrTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 112 (175)
T 1j6w_A 51 KGIHTLEHLFAGFMRDHLNGDSIEIIDISP-MGCRTGFYMSLI--G-TPNEQKVSEAWLASMQDVL 112 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHCBTTBEEEEEEE-CTTSSEEEEEEE--S-CCCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhhCccCCCCeEEEeCC-cCcccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 44799999999999998732 345555 443369997664 2 3555554 55777776664
No 95
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=41.90 E-value=68 Score=28.98 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhC-C---e-EEecCccccCCceEEEEEcCCCCCCHhHH-HHHHHHHHHHh
Q 008152 153 TFWHSSAHILGQAIEQQYG-C---K-LCIGPCTTRGEGFYYDAFYGDLGLNPDHF-KSIDSEADKAA 213 (576)
Q Consensus 153 vy~hS~ahlL~~A~~~~fg-~---~-l~ig~si~~~~Gfy~d~~~~~~~~t~edl-~~Ie~~m~~iI 213 (576)
.=-||+-|+++.-+++... . . +-+|| .+.-.|||.-+. + ..+.+++ +.+++.|+.+.
T Consensus 51 ~~iHTlEHL~A~~lRnh~~~~~~~~iId~sP-MGCrTGFYl~l~--G-~~~~~~v~~~~~~~l~~il 113 (157)
T 1j98_A 51 DTIHTLEHLLAFTIRSHAEKYDHFDIIDISP-MGCQTGYYLVVS--G-ETTSAEIVDLLEDTMKEAV 113 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEEEEEEE-CTTSSEEEEEEE--E-CCCHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhcCccccCCCCEEEeCC-cCcccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 4479999999999999873 1 3 44555 543369997664 2 3555554 55777776664
No 96
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=40.65 E-value=25 Score=36.06 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=40.6
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHh-CCe
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFT 379 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~l-G~~ 379 (576)
+..|++++++|.+||++.... ....||+|.+..+.+.+-. +..+...+..+++.+ |.+
T Consensus 190 ~~~piriFEiGrVFR~d~~d~----tH~pEF~qlegl~~g~~v~----f~dLKg~le~ll~~lfG~~ 248 (350)
T 1b7y_A 190 HTPPFRIVVPGRVFRFEQTDA----THEAVFHQLEGLVVGEGIA----MAHLKGAIYELAQALFGPD 248 (350)
T ss_dssp CCSSEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEEETTCC----HHHHHHHHHHHHHHHSCSS
T ss_pred cCCCeeEEEeeeEEECCCCCC----CCCChhHEEEEEEECCCCC----HHHHHHHHHHHHHhhcCCC
Confidence 367899999999999764221 1468999999998886422 233555666777766 864
No 97
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=39.29 E-value=12 Score=39.19 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=43.7
Q ss_pred cEEEeecCCCCHHHHHhhhccccccceEEE--EECCEEeeccccccCCCcEEEeec
Q 008152 92 SVKEGKRWETSPMDIAQGISKSLAANALIS--MVNGVLWDMTRPLEADCDLKLFTF 145 (576)
Q Consensus 92 ~~~~~~~~~ttp~dia~~i~~~~~~~~v~a--~Vng~l~dL~~~l~~d~~ve~l~~ 145 (576)
.....++ |+|+.|+|..|+....+..+.| .+|+....++++|++...|+|++-
T Consensus 341 ~~~~l~~-G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 341 HVFLMKK-GSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp CCEEEET-TCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC
T ss_pred eeEEeCC-CCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeC
Confidence 3444555 9999999999998888888888 679988899999987767888863
No 98
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=33.39 E-value=49 Score=29.89 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=42.3
Q ss_pred CCCCCceEEEEeCCCChH------HHHHHHHHHHHhCCcEEE----EeCCCCcHHHHHHHhHhcCCceEEEec
Q 008152 500 FWLSPRQAIVCPVSEKSQ------PYALQVRDHIYRAGYYVD----VDTTDRKIQKKVTTSNFEIKNPHYFYC 562 (576)
Q Consensus 500 ~~laP~qV~Vipv~~~~~------~~a~~i~~~Lr~~Gi~v~----vD~~~~slgkkir~A~~~g~p~~iIiG 562 (576)
-...+..|.|+.++++.. .-+.-+++.|++.|+.+. +.|. ..+.+.+++|-..++..+|+-|
T Consensus 3 ~~~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 3 GSMTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp ----CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CCCCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECC
Confidence 344567799999986432 234567889999998653 4455 7889999988766787777766
No 99
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=29.58 E-value=73 Score=26.00 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=32.9
Q ss_pred CCCHHHHHhhhccccc---c------------ceEEEEECCEEee----ccccccCCCcEEEee
Q 008152 100 ETSPMDIAQGISKSLA---A------------NALISMVNGVLWD----MTRPLEADCDLKLFT 144 (576)
Q Consensus 100 ~ttp~dia~~i~~~~~---~------------~~v~a~Vng~l~d----L~~~l~~d~~ve~l~ 144 (576)
++|..|+...+...+. . +-+...||++.|+ ++++|..+.+|.|+-
T Consensus 31 ~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 31 PVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp CCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred CCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 6899998877754331 1 1246889999885 789999888888864
No 100
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=28.40 E-value=43 Score=30.56 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=33.7
Q ss_pred CCHHHHHhhhccccc------------cceEEEEECCEEeec----cccccCCCcEEEeec
Q 008152 101 TSPMDIAQGISKSLA------------ANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (576)
Q Consensus 101 ttp~dia~~i~~~~~------------~~~v~a~Vng~l~dL----~~~l~~d~~ve~l~~ 145 (576)
+|+.++...+...++ ...++..|||+.++. +++|..+.+|.++..
T Consensus 23 ~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~Pp 83 (168)
T 1v8c_A 23 ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83 (168)
T ss_dssp SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECS
T ss_pred CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECc
Confidence 789998888764421 134678899999987 889988878887753
No 101
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=28.16 E-value=76 Score=26.94 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=42.3
Q ss_pred CCeEEEeCC-------C-cE--EEeec--CCCCHHHHHhhhcccc-------------ccceEEEEECCEEe----eccc
Q 008152 82 DPIKITLPD-------G-SV--KEGKR--WETSPMDIAQGISKSL-------------AANALISMVNGVLW----DMTR 132 (576)
Q Consensus 82 ~~I~v~l~d-------g-~~--~~~~~--~~ttp~dia~~i~~~~-------------~~~~v~a~Vng~l~----dL~~ 132 (576)
..|+|.++. + +. ++.+. .++|+.|+...+...+ -.+-+...||++-| .+++
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt 91 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDY 91 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTC
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCc
Confidence 347777764 2 23 34442 2479999988776543 12347888999876 4789
Q ss_pred cccCCCcEEEee
Q 008152 133 PLEADCDLKLFT 144 (576)
Q Consensus 133 ~l~~d~~ve~l~ 144 (576)
+|..+.+|.|+.
T Consensus 92 ~L~dGDeV~iip 103 (114)
T 1wgk_A 92 QLQDQDSILFIS 103 (114)
T ss_dssp BCCSSEEEEEEE
T ss_pred CCCCCCEEEEeC
Confidence 999888888865
No 102
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=26.94 E-value=1.4e+02 Score=27.13 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHhCCcEEEEe-CCCC-------cHHHHHHHhHhcCCceEEEe
Q 008152 516 SQPYALQVRDHIYRAGYYVDVD-TTDR-------KIQKKVTTSNFEIKNPHYFY 561 (576)
Q Consensus 516 ~~~~a~~i~~~Lr~~Gi~v~vD-~~~~-------slgkkir~A~~~g~p~~iIi 561 (576)
..+.|.++.+.|++.|+.|++- .|+. ++..|.+.|+..++.+.|=|
T Consensus 31 ~l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISI 84 (180)
T 3qay_A 31 NKSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIEL 84 (180)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEe
Confidence 3567888999999999997433 2321 39999999999999876654
No 103
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=26.69 E-value=61 Score=32.14 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=38.1
Q ss_pred cCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHh-CCe
Q 008152 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFT 379 (576)
Q Consensus 315 elpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~l-G~~ 379 (576)
..|++++++|.+||.+..+. . ...||+|.++...+.+-. +..+...+..+++.+ |++
T Consensus 130 ~~~~riFEiG~Vfr~d~~d~-~---h~~Ef~~Le~~~~g~~~d----f~dlKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 130 QGPVKIICPGKVYRRDSDDA-T---HSHQFTQIEGLVVDKNIK----MSDLKGTLELVAKKLFGAD 187 (294)
T ss_dssp CSCEEEEEEEEEECCCCCBT-T---BCSEEEEEEEEEEESSCC----HHHHHHHHHHHHHHHHCTT
T ss_pred CCCccEEEEcCEEecCCCCC-C---CCChhhEEEEEEECCCCC----HHHHHHHHHHHHHHHhCCC
Confidence 56899999999999754221 1 346999988888875422 223445666666666 764
No 104
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=25.68 E-value=1e+02 Score=31.25 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=36.3
Q ss_pred hcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHh-C--CeEEEE
Q 008152 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-G--FTYELK 383 (576)
Q Consensus 314 relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~l-G--~~~~l~ 383 (576)
+..|++++++|.+||.+. +-..+..|+|.+.-..+..-.. ..+...+..+++.| | ++++++
T Consensus 181 ~~~pirifeiGrVyR~d~-----d~th~p~fhqlegl~v~~~v~f----~dLKg~Le~~l~~lfg~~~~vr~r 244 (327)
T 3pco_A 181 QQPPIRIIAPGRVYRNDY-----DQTHTPMFHQMEGLIVDTNISF----TNLKGTLHDFLRNFFEEDLQIRFR 244 (327)
T ss_dssp CCSSCCBCCEECCBCSCC-----BTTBCSBCCEEEEEEEETTCCH----HHHHHHHHHHHHHHHCSCSEEEEE
T ss_pred CCCCeeEEeeccEEecCC-----CcccCCcccEEEEEEECCCCCH----HHHHHHHHHHHHHHhCCCceEEEe
Confidence 467899999999999862 2225667999875554432221 22334445555554 4 444443
No 105
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=23.94 E-value=1.6e+02 Score=26.76 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeC---CCCcHHHHHHHhHhcCCceEEEe
Q 008152 517 QPYALQVRDHIYRA-GYYVDVDT---TDRKIQKKVTTSNFEIKNPHYFY 561 (576)
Q Consensus 517 ~~~a~~i~~~Lr~~-Gi~v~vD~---~~~slgkkir~A~~~g~p~~iIi 561 (576)
.+.|.++.+.|++. |+.|.+.- ..-++..|.+.|+..++.+.|-|
T Consensus 31 l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSi 79 (179)
T 1jwq_A 31 LAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSI 79 (179)
T ss_dssp HHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEE
Confidence 46788899999999 99999763 23579999999999999876655
No 106
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=22.46 E-value=48 Score=29.31 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=35.2
Q ss_pred CceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCC----CCcHHHHHHHhHh
Q 008152 504 PRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT----DRKIQKKVTTSNF 552 (576)
Q Consensus 504 P~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~----~~slgkkir~A~~ 552 (576)
.++|.|---+++....+..|+..|+..|++|.+|.+ +..+...|.+|=.
T Consensus 20 ~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~ 72 (154)
T 3h16_A 20 PHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLG 72 (154)
T ss_dssp SEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHT
T ss_pred CceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHH
Confidence 478888776655335688899999999999999874 3556666655533
No 107
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=22.37 E-value=1.6e+02 Score=26.43 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=43.5
Q ss_pred CCceEEEEeCCCCh----HHHHHHHHHHHHhCCcEEE----EeCCCCcHHHHHHHhHhc-CCceEEEec
Q 008152 503 SPRQAIVCPVSEKS----QPYALQVRDHIYRAGYYVD----VDTTDRKIQKKVTTSNFE-IKNPHYFYC 562 (576)
Q Consensus 503 aP~qV~Vipv~~~~----~~~a~~i~~~Lr~~Gi~v~----vD~~~~slgkkir~A~~~-g~p~~iIiG 562 (576)
.+..|.|+.++++. ..-+.-|++.|++.|+.+. +.|....+.+.+++|-.. ++.++|+-|
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 45679999998653 2335668899999998664 333335789999998776 687777766
No 108
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=21.94 E-value=1.1e+02 Score=28.13 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=43.2
Q ss_pred CCCceEEEEeCCCCh-----HHHHHHHHHHHHhCCcEEE----EeCCCCcHHHHHHHhHhcCCceEEEec
Q 008152 502 LSPRQAIVCPVSEKS-----QPYALQVRDHIYRAGYYVD----VDTTDRKIQKKVTTSNFEIKNPHYFYC 562 (576)
Q Consensus 502 laP~qV~Vipv~~~~-----~~~a~~i~~~Lr~~Gi~v~----vD~~~~slgkkir~A~~~g~p~~iIiG 562 (576)
..+..|.|++++++. ..-+.-|++.|++.|+.+. +.|....+.+.+++|-..++..+|+-|
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 356679999988654 2245668899999998664 334346788999988656787777766
No 109
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=21.37 E-value=72 Score=26.70 Aligned_cols=32 Identities=16% Similarity=-0.022 Sum_probs=14.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCcEEEEeC
Q 008152 507 AIVCPVS--EKSQPYALQVRDHIYRAGYYVDVDT 538 (576)
Q Consensus 507 V~Vipv~--~~~~~~a~~i~~~Lr~~Gi~v~vD~ 538 (576)
+.|+|++ ++..+|..++.+.|++.|+...+..
T Consensus 7 ~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~p 40 (104)
T 2ibo_A 7 LQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVTP 40 (104)
T ss_dssp EEEEECSCSHHHHHHHHHHHHHHHHSSSEEEECS
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHcCCCeEecC
Confidence 4445554 2334444444445555555444443
No 110
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=20.93 E-value=55 Score=30.12 Aligned_cols=47 Identities=4% Similarity=0.042 Sum_probs=27.2
Q ss_pred CceEEEEeCCCCh-HHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHh
Q 008152 504 PRQAIVCPVSEKS-QPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTS 550 (576)
Q Consensus 504 P~qV~Vipv~~~~-~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A 550 (576)
.++|.|--=+++. ...+..|+..|...||++.+|+++-..|..+...
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~ 55 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC-----------
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHH
Confidence 3677776544433 2567889999999999999998765556555443
No 111
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=20.66 E-value=81 Score=26.55 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=14.4
Q ss_pred eEEEEeCC--CChHHHHHHHHHHHHhCCcEEEEe
Q 008152 506 QAIVCPVS--EKSQPYALQVRDHIYRAGYYVDVD 537 (576)
Q Consensus 506 qV~Vipv~--~~~~~~a~~i~~~Lr~~Gi~v~vD 537 (576)
++.|+|++ ++..+|..++.+.|++.|+...+.
T Consensus 19 ~~sv~Plg~~~svs~~Va~~i~vi~~sGL~y~~~ 52 (106)
T 1vk8_A 19 SIKVVPAVEDGRLHEVIDRAIEKISSWGMKYEVG 52 (106)
T ss_dssp EEEEEESSCGGGHHHHHHHHHHHHHTTCSCEEEC
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHcCCCeEeC
Confidence 34444544 233444444444444444444443
Done!