BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008153
         (576 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZSH|B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della
           Recognition By The Gibberellin Receptor
 pdb|2ZSI|B Chain B, Structural Basis Of Gibberellin(Ga4)-Induced Della
           Recognition By The Gibberellin Receptor
          Length = 110

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 76/133 (57%), Gaps = 33/133 (24%)

Query: 29  KAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTV 88
           K  M  EE D  GMDELL VLGYKVRSSEMADVAQKLEQLE++M   QED +S LAT+TV
Sbjct: 11  KTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETV 70

Query: 89  HYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEY 148
           HYNP+++  W+ SML  LN             P  S+                    +EY
Sbjct: 71  HYNPAELYTWLDSMLTDLN-------------PPSSN--------------------AEY 97

Query: 149 DLRAIPGSAAYPQ 161
           DL+AIPG A   Q
Sbjct: 98  DLKAIPGDAILNQ 110


>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
           Prokaryotic Condensin
 pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
           Prokaryotic Condensin
          Length = 426

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 382 ADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANH 441
           A +  D L+ + P + TV + S+ E  R+  R   + +    +   +  +  ++E+    
Sbjct: 209 ASIAKDYLEKKGPGLGTVNLGSIDEFERVNERYKFLSEQKEDLTEAKNTLFQVIEEMDEE 268

Query: 442 NSPVFLDRFTEALHYYSSLFDSLEGSG-----LTPPSQDQVMSEVYL-----GRQICNIV 491
            +  F D F +   ++  +F SL G G     LT P+ D + S V +     G+++ N+ 
Sbjct: 269 MTKRFNDTFVQIRSHFDQVFRSLFGGGRAELRLTDPN-DLLHSGVEIIAQPPGKKLQNLN 327

Query: 492 ACDGTDR 498
              G +R
Sbjct: 328 LLSGGER 334


>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
           P- Type Atpase Copa From Bacillus Subtilis
          Length = 151

 Score = 32.0 bits (71), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 36  EQDTGGMDELLEVLGYKVRSSEM---------ADVAQKLEQ-LEMVMGTAQEDGISHLAT 85
           E  T  + E +E LGY V + +          A  A ++E+ L  + G A       L T
Sbjct: 54  ETGTAAIQEKIEKLGYHVVTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALET 113

Query: 86  DTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAE 123
            TV YNP + S  V  + E ++  G+  + +  QD  E
Sbjct: 114 VTVEYNPKEAS--VSDLKEAVDKLGYKLKLKGEQDSIE 149


>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
           Bacillus Subtilis Copa
          Length = 147

 Score = 30.4 bits (67), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 36  EQDTGGMDELLEVLGYKVRSSEM---------ADVAQKLEQ-LEMVMGTAQEDGISHLAT 85
           E  T  + E +E LGY V + +          A  A ++E+ L  + G A       L T
Sbjct: 54  ETGTAAIQEKIEKLGYHVVTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALET 113

Query: 86  DTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQD 120
            TV YNP + S  V  + E ++  G+  + +  QD
Sbjct: 114 VTVEYNPKEAS--VSDLKEAVDKLGYKLKLKGEQD 146


>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
           Cryo-Em Map
          Length = 515

 Score = 30.0 bits (66), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 17/86 (19%)

Query: 211 MACAEAIQQENLKV-----------ADALVKHIGLLAAAQAGAMRKVATYFAEALARRIY 259
           ++CA A+ QE  K            ADAL   +  +A A+   M  + T   E  AR++ 
Sbjct: 405 ISCALAVSQEADKCPTLEQYAMRAFADAL--EVIPMALAENSGMNPIQT-MTEVRARQVK 461

Query: 260 RIYPQ---DCLDSSYNDILQMHFYET 282
            + P    DCL    ND+   H  ET
Sbjct: 462 EVNPALGIDCLHKGTNDMKHQHVIET 487


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,405,452
Number of Sequences: 62578
Number of extensions: 652873
Number of successful extensions: 1976
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1973
Number of HSP's gapped (non-prelim): 11
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)