Query 008153
Match_columns 576
No_of_seqs 213 out of 739
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 20:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 8E-110 2E-114 882.5 36.9 359 206-568 1-374 (374)
2 PF12041 DELLA: Transcriptiona 100.0 2.8E-44 6E-49 293.3 5.2 69 43-111 1-69 (73)
3 PRK15451 tRNA cmo(5)U34 methyl 96.3 0.11 2.5E-06 52.5 15.0 192 281-521 34-227 (247)
4 TIGR00740 methyltransferase, p 94.3 3 6.5E-05 41.7 17.1 106 305-435 53-159 (239)
5 TIGR02716 C20_methyl_CrtF C-20 94.2 0.51 1.1E-05 49.1 11.8 116 294-439 138-257 (306)
6 TIGR02752 MenG_heptapren 2-hep 92.6 4.2 9.2E-05 40.0 14.9 113 295-435 35-149 (231)
7 PLN02233 ubiquinone biosynthes 90.2 23 0.0005 36.3 17.8 133 293-451 61-195 (261)
8 PF12847 Methyltransf_18: Meth 88.8 2 4.4E-05 36.9 7.7 106 308-436 4-110 (112)
9 PRK14103 trans-aconitate 2-met 86.5 7.4 0.00016 39.4 11.2 108 295-438 19-127 (255)
10 PF13489 Methyltransf_23: Meth 84.9 6.7 0.00014 35.6 9.1 98 303-440 20-119 (161)
11 TIGR00477 tehB tellurite resis 84.1 7.7 0.00017 37.8 9.7 111 292-432 17-128 (195)
12 PF13847 Methyltransf_31: Meth 81.8 11 0.00023 34.9 9.3 105 304-435 2-108 (152)
13 PF05269 Phage_CII: Bacterioph 79.5 1 2.3E-05 39.7 1.6 27 42-68 51-77 (91)
14 PF01209 Ubie_methyltran: ubiE 78.9 10 0.00023 38.5 8.7 180 296-524 38-220 (233)
15 PRK06202 hypothetical protein; 77.8 34 0.00074 34.0 12.0 109 302-435 57-165 (232)
16 PF13649 Methyltransf_25: Meth 77.6 6.1 0.00013 33.9 5.8 97 309-429 1-99 (101)
17 PLN02336 phosphoethanolamine N 77.0 30 0.00065 38.3 12.4 137 295-463 27-172 (475)
18 PF09243 Rsm22: Mitochondrial 76.1 23 0.0005 36.8 10.5 139 288-454 12-156 (274)
19 PF03291 Pox_MCEL: mRNA cappin 75.4 26 0.00056 37.7 10.9 116 305-434 62-183 (331)
20 PRK08317 hypothetical protein; 75.2 81 0.0018 30.4 15.7 42 297-344 11-52 (241)
21 COG2226 UbiE Methylase involve 74.9 1.1E+02 0.0023 31.6 15.9 154 281-467 26-184 (238)
22 PRK01683 trans-aconitate 2-met 74.5 51 0.0011 33.1 12.4 112 293-437 19-130 (258)
23 PLN02585 magnesium protoporphy 73.9 47 0.001 35.4 12.4 103 305-435 144-248 (315)
24 PRK12335 tellurite resistance 72.8 36 0.00078 35.3 11.0 96 308-433 123-219 (287)
25 PLN02396 hexaprenyldihydroxybe 72.5 45 0.00097 35.7 11.8 100 306-436 132-234 (322)
26 TIGR03587 Pse_Me-ase pseudamin 70.5 88 0.0019 31.0 12.7 100 308-439 46-145 (204)
27 PRK15001 SAM-dependent 23S rib 69.6 35 0.00076 37.4 10.4 109 308-437 231-340 (378)
28 PF00891 Methyltransf_2: O-met 69.6 25 0.00053 35.1 8.7 110 295-440 90-203 (241)
29 smart00138 MeTrc Methyltransfe 67.8 23 0.00049 36.5 8.2 52 303-358 97-150 (264)
30 TIGR01934 MenG_MenH_UbiE ubiqu 67.5 1.2E+02 0.0026 29.1 17.9 119 291-438 25-145 (223)
31 TIGR03438 probable methyltrans 66.6 69 0.0015 33.5 11.6 119 297-436 57-176 (301)
32 PRK11207 tellurite resistance 66.3 64 0.0014 31.5 10.7 112 293-434 18-131 (197)
33 PF03848 TehB: Tellurite resis 65.5 56 0.0012 32.6 10.1 111 295-435 20-131 (192)
34 PTZ00098 phosphoethanolamine N 63.4 1.3E+02 0.0029 30.8 12.8 116 291-435 38-154 (263)
35 PF13679 Methyltransf_32: Meth 62.2 18 0.00039 33.5 5.7 40 301-344 21-61 (141)
36 PF08241 Methyltransf_11: Meth 61.0 47 0.001 26.9 7.5 93 310-434 1-94 (95)
37 TIGR02021 BchM-ChlM magnesium 60.7 92 0.002 30.5 10.7 117 287-435 35-156 (219)
38 PLN02336 phosphoethanolamine N 60.4 1.1E+02 0.0024 33.9 12.4 113 294-436 255-368 (475)
39 PRK00216 ubiE ubiquinone/menaq 60.1 1.7E+02 0.0037 28.3 16.7 42 297-344 43-84 (239)
40 PRK09489 rsmC 16S ribosomal RN 58.5 1E+02 0.0022 33.2 11.3 114 295-435 186-301 (342)
41 PRK05785 hypothetical protein; 57.5 1.5E+02 0.0032 29.8 11.7 93 306-436 52-145 (226)
42 PRK14968 putative methyltransf 55.1 1.7E+02 0.0038 27.2 11.2 43 305-360 23-65 (188)
43 PRK11036 putative S-adenosyl-L 53.0 84 0.0018 31.7 9.2 111 295-435 35-147 (255)
44 PF12147 Methyltransf_20: Puta 50.9 1.5E+02 0.0033 31.8 10.7 126 302-449 132-261 (311)
45 TIGR02081 metW methionine bios 50.1 1.5E+02 0.0032 28.6 10.1 39 296-344 6-44 (194)
46 PF07521 RMMBL: RNA-metabolisi 49.1 28 0.00062 26.1 3.8 38 397-436 1-39 (43)
47 PRK03522 rumB 23S rRNA methylu 48.8 1.7E+02 0.0037 30.8 11.0 98 307-436 175-273 (315)
48 COG0357 GidB Predicted S-adeno 44.0 1.3E+02 0.0028 30.6 8.8 86 270-386 45-131 (215)
49 PRK00107 gidB 16S rRNA methylt 42.9 3.4E+02 0.0073 26.7 11.5 97 306-436 46-144 (187)
50 TIGR00452 methyltransferase, p 42.4 2.4E+02 0.0053 30.1 11.0 114 295-436 111-224 (314)
51 PRK11705 cyclopropane fatty ac 41.5 2.6E+02 0.0056 30.6 11.3 114 289-435 151-265 (383)
52 PLN02244 tocopherol O-methyltr 41.0 3.7E+02 0.0081 28.6 12.2 100 305-434 118-220 (340)
53 PRK05134 bifunctional 3-demeth 41.0 3.6E+02 0.0078 26.5 13.2 104 303-436 46-150 (233)
54 TIGR02085 meth_trns_rumB 23S r 40.9 1.9E+02 0.0041 31.4 10.1 97 308-436 236-333 (374)
55 TIGR00537 hemK_rel_arch HemK-r 39.4 3.4E+02 0.0073 25.7 11.9 50 308-374 22-71 (179)
56 COG4106 Tam Trans-aconitate me 38.4 1.7E+02 0.0037 30.4 8.5 114 298-444 23-136 (257)
57 PF08242 Methyltransf_12: Meth 38.3 12 0.00027 31.6 0.4 29 310-345 1-29 (99)
58 TIGR03439 methyl_EasF probable 37.1 3.6E+02 0.0078 29.0 11.3 149 296-463 69-234 (319)
59 TIGR02469 CbiT precorrin-6Y C5 36.7 1E+02 0.0022 26.4 6.1 53 297-360 11-63 (124)
60 PRK10258 biotin biosynthesis p 36.4 4.3E+02 0.0094 26.3 11.3 44 292-344 29-72 (251)
61 PRK10909 rsmD 16S rRNA m(2)G96 36.3 3.2E+02 0.0069 27.2 10.1 106 307-442 55-164 (199)
62 PLN02446 (5-phosphoribosyl)-5- 34.0 50 0.0011 34.6 4.1 27 302-329 55-81 (262)
63 PRK06922 hypothetical protein; 33.8 2.4E+02 0.0052 33.5 9.9 106 307-435 420-535 (677)
64 PRK15068 tRNA mo(5)U34 methylt 33.7 3.7E+02 0.0081 28.6 10.8 112 297-436 114-225 (322)
65 COG2227 UbiG 2-polyprenyl-3-me 32.0 1.5E+02 0.0032 30.9 7.0 100 305-435 59-159 (243)
66 TIGR00138 gidB 16S rRNA methyl 30.6 5E+02 0.011 25.1 11.4 96 307-436 44-141 (181)
67 PF02353 CMAS: Mycolic acid cy 30.6 2.4E+02 0.0052 29.4 8.5 114 294-436 51-165 (273)
68 PRK14751 tetracycline resistan 30.1 21 0.00045 24.6 0.4 10 87-96 7-16 (28)
69 COG2230 Cfa Cyclopropane fatty 30.0 1.6E+02 0.0035 31.3 7.1 116 288-434 55-173 (283)
70 COG1093 SUI2 Translation initi 29.6 65 0.0014 33.8 4.0 43 333-375 219-261 (269)
71 PRK07580 Mg-protoporphyrin IX 29.5 3.9E+02 0.0083 26.0 9.4 44 304-360 62-105 (230)
72 KOG4300 Predicted methyltransf 28.2 6E+02 0.013 26.4 10.4 121 301-452 72-196 (252)
73 PF08499 PDEase_I_N: 3'5'-cycl 28.0 25 0.00055 28.8 0.6 27 76-105 5-31 (59)
74 smart00650 rADc Ribosomal RNA 27.6 1.3E+02 0.0028 28.4 5.5 53 295-360 3-55 (169)
75 PF08076 TetM_leader: Tetracyc 27.6 25 0.00053 24.5 0.4 10 87-96 7-16 (28)
76 PRK03646 dadX alanine racemase 27.0 1.2E+02 0.0026 32.7 5.8 37 305-345 117-158 (355)
77 TIGR02129 hisA_euk phosphoribo 26.8 65 0.0014 33.6 3.5 25 302-330 50-74 (253)
78 PF11455 DUF3018: Protein of 26.4 35 0.00076 28.5 1.2 20 504-523 4-23 (65)
79 KOG1165 Casein kinase (serine/ 26.4 36 0.00079 37.2 1.6 13 303-315 164-176 (449)
80 smart00828 PKS_MT Methyltransf 25.9 3.8E+02 0.0082 26.1 8.7 100 308-435 2-102 (224)
81 TIGR01716 RGG_Cterm transcript 25.8 1.3E+02 0.0028 29.3 5.3 56 205-260 126-182 (220)
82 COG1341 Predicted GTPase or GT 25.7 2.5E+02 0.0054 31.3 7.8 114 288-439 89-211 (398)
83 PF02310 B12-binding: B12 bind 25.5 78 0.0017 27.7 3.4 84 359-457 19-102 (121)
84 cd00635 PLPDE_III_YBL036c_like 25.3 3E+02 0.0066 27.2 7.9 67 305-375 117-196 (222)
85 PRK11873 arsM arsenite S-adeno 25.2 5.8E+02 0.013 25.8 10.1 102 307-435 79-181 (272)
86 TIGR02072 BioC biotin biosynth 24.4 6.4E+02 0.014 24.2 16.9 111 294-436 20-134 (240)
87 PRK00274 ksgA 16S ribosomal RN 24.2 1.2E+02 0.0027 31.2 5.1 54 282-344 14-72 (272)
88 COG2242 CobL Precorrin-6B meth 23.9 1.6E+02 0.0034 29.6 5.4 53 298-364 27-82 (187)
89 PLN02232 ubiquinone biosynthes 23.7 6.1E+02 0.013 23.8 9.8 35 400-438 47-83 (160)
90 TIGR01626 ytfJ_HI0045 conserve 21.5 1.7E+02 0.0036 29.0 5.1 111 305-427 59-182 (184)
91 PRK00121 trmB tRNA (guanine-N( 21.0 3.3E+02 0.007 26.7 7.1 110 305-435 40-154 (202)
92 PF05175 MTS: Methyltransferas 20.8 2.2E+02 0.0047 27.0 5.6 116 293-434 19-137 (170)
93 PRK13255 thiopurine S-methyltr 20.4 7.8E+02 0.017 24.6 9.8 30 306-344 38-67 (218)
94 COG1500 Predicted exosome subu 20.1 1.8E+02 0.004 30.0 5.1 62 474-537 91-153 (234)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=8.3e-110 Score=882.47 Aligned_cols=359 Identities=51% Similarity=0.904 Sum_probs=333.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHchhccCCCChhhHHHHHHHHHHHHHHhccCCCCC-----CCC---CHHHH--H
Q 008153 206 LVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDC-----LDS---SYNDI--L 275 (576)
Q Consensus 206 Lv~LLlaCAeAV~~gd~~~A~~lL~~i~~las~~g~~~qRlA~yFaeAL~~Rl~~~~p~~~-----~~~---s~~~~--l 275 (576)
|+|||++||+||+.||...|+.+|++|++++|++|+|+||||+||++||++||.+.+++.. ... ...+. .
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999655311 111 12222 2
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHH
Q 008153 276 QMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQ 355 (576)
Q Consensus 276 ~~~fye~~P~~kfahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~e 355 (576)
+..||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.+.+.+.+++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHhHcCceeEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCC----ChHHHHHHHHHhcCCcE
Q 008153 356 VGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARP----GGIEKVVSSIKAMRPKI 431 (576)
Q Consensus 356 tG~rL~~fA~slgVpFeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~----~~~d~vL~~Ir~L~PkI 431 (576)
||+||.+||+++||||||++|+..+++++++++|+++++ |+|||||+|+||||++.+ ++++.||+.||+|+|+|
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~--E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPG--EALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCC--cEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 999999999999999999998889999999999999976 999999999999999643 36889999999999999
Q ss_pred EEEEecCCCCCCchhHHHHHHHHHHHHHHhhhhhccCCCCCcHHHHHHH-HHhhcccchhhcccCCCCcccccchhhHHH
Q 008153 432 ITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSE-VYLGRQICNIVACDGTDRNERHETLTQWRT 510 (576)
Q Consensus 432 vtlvEqeanhNsp~F~~RF~EAL~yYsalFDSLea~~~~~~s~~r~~~E-~~lgreI~NiVAcEG~eRvERhE~~~qWr~ 510 (576)
||++|+|+|||+|+|++||.|||+||+++|||||+++ ++.+.+|...| .+||+||+|||||||.+|+||||++++|+.
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~-~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~ 317 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACL-PRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRR 317 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHH
Confidence 9999999999999999999999999999999999997 44556776555 569999999999999999999999999999
Q ss_pred HHhcCCCccccCChHHHHHHHHHHHhcCCCCCcEEEeeCcEEEEeeCCceeEEEeecc
Q 008153 511 RLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ 568 (576)
Q Consensus 511 Rm~~AGF~pv~ls~~a~~qA~~LL~~~~~~~gy~v~e~~g~L~LgWk~rpL~a~SAW~ 568 (576)
||.+|||+++|+|++++.||++||+.|+ ++||+|++++|||+||||++||+++||||
T Consensus 318 r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 318 RMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 9999999999999999999999999998 89999999999999999999999999997
No 2
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=100.00 E-value=2.8e-44 Score=293.31 Aligned_cols=69 Identities=78% Similarity=1.107 Sum_probs=49.9
Q ss_pred hhhhhhcCCccccccHHHHHHHHHHHHHHhccccccccccccccccccCCCchhhHHHHhhhccCCCCC
Q 008153 43 DELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGF 111 (576)
Q Consensus 43 d~~la~~gykv~ssd~~~vaqkle~le~~m~~~~~d~~s~lasdtvhynpsdls~w~~sml~e~~~~~~ 111 (576)
|||||++|||||||||+||||||||||+|||++|+|||+||||||||||||||++||||||+||||+|+
T Consensus 1 DellA~lGYkVrsSdmadVAQkLEqLE~vmg~~~~d~ls~lasDTVhyNPSDLs~WvesMLsEln~~~~ 69 (73)
T PF12041_consen 1 DELLAVLGYKVRSSDMADVAQKLEQLEMVMGNAQEDGLSQLASDTVHYNPSDLSSWVESMLSELNPPPN 69 (73)
T ss_dssp -HHHHTTT-B-BGGGHHHHHHHHHHHHHHHTT---------HCCHCCS-TTBHHHHHHHHHHC------
T ss_pred CchhhhhcccccchHHHHHHHHHHHHHHHHcccccchHHHhhhhhhccChHHHHHHHHHHHHhcCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999998764
No 3
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.33 E-value=0.11 Score=52.47 Aligned_cols=192 Identities=14% Similarity=0.154 Sum_probs=100.2
Q ss_pred hhcchhhHHHHHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHH
Q 008153 281 ETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKL 360 (576)
Q Consensus 281 e~~P~~kfahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL 360 (576)
...|.+...|-.++..+ ...-. ..-+|+|+|-|.|.--.. |+.+- ..|..++|||++ +...++...+++
T Consensus 34 ~~~p~y~~~~~~~~~~~-~~~~~-~~~~vLDlGcGtG~~~~~----l~~~~-~~~~~~v~gvD~----S~~ml~~A~~~~ 102 (247)
T PRK15451 34 RSVPGYSNIISMIGMLA-ERFVQ-PGTQVYDLGCSLGAATLS----VRRNI-HHDNCKIIAIDN----SPAMIERCRRHI 102 (247)
T ss_pred hcCCChHHHHHHHHHHH-HHhCC-CCCEEEEEcccCCHHHHH----HHHhc-CCCCCeEEEEeC----CHHHHHHHHHHH
Confidence 56788888887766543 33322 234799999999873333 33321 125579999994 345666555555
Q ss_pred HHHHhHcCceeEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEE-EEEecC
Q 008153 361 AQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKII-TIVEQE 438 (576)
Q Consensus 361 ~~fA~slgVpFeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIv-tlvEqe 438 (576)
.++.. .-.++|.. ..+.++.. . +..+++ +.+.||++.. ..+..+|+.| +.|+|.-. +++|.=
T Consensus 103 ~~~~~--~~~v~~~~---~d~~~~~~-----~--~~D~vv--~~~~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 103 DAYKA--PTPVDVIE---GDIRDIAI-----E--NASMVV--LNFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HhcCC--CCCeEEEe---CChhhCCC-----C--CCCEEe--hhhHHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 44221 11344432 23333321 1 113444 4466888743 3356666665 77899744 556643
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHhhcccchhhcccCCCCcccccchhhHHHHHhcCCCc
Q 008153 439 ANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFE 518 (576)
Q Consensus 439 anhNsp~F~~RF~EAL~yYsalFDSLea~~~~~~s~~r~~~E~~lgreI~NiVAcEG~eRvERhE~~~qWr~Rm~~AGF~ 518 (576)
... .+.+-+.+.+..+.|. .... -+... +.+. ...+.| +-++++..+...+|+.|||.
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~------~~~g---~s~~e-i~~~--~~~~~~---------~~~~~~~~~~~~~L~~aGF~ 224 (247)
T PRK15451 167 SFE-DAKVGELLFNMHHDFK------RANG---YSELE-ISQK--RSMLEN---------VMLTDSVETHKARLHKAGFE 224 (247)
T ss_pred CCC-cchhHHHHHHHHHHHH------HHcC---CCHHH-HHHH--HHHHHh---------hcccCCHHHHHHHHHHcCch
Confidence 222 2333344444333221 1111 11111 1111 111222 34456788999999999999
Q ss_pred ccc
Q 008153 519 PVH 521 (576)
Q Consensus 519 pv~ 521 (576)
.+-
T Consensus 225 ~v~ 227 (247)
T PRK15451 225 HSE 227 (247)
T ss_pred hHH
Confidence 743
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=94.27 E-value=3 Score=41.69 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=59.5
Q ss_pred CeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCC
Q 008153 305 NRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADL 384 (576)
Q Consensus 305 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl 384 (576)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||++ +...++...+++.++.. +...+|.. ..+.++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~----s~~ml~~a~~~~~~~~~--~~~v~~~~---~d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDN----SQPMVERCRQHIAAYHS--EIPVEILC---NDIRHV 118 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeC----CHHHHHHHHHHHHhcCC--CCCeEEEE---CChhhC
Confidence 34479999999995 4555554422 25689999995 34556555555544321 22334432 233332
Q ss_pred CccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEE
Q 008153 385 EPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIV 435 (576)
Q Consensus 385 ~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlv 435 (576)
. ... ..++ -|.+.||++.+ .....+|+.+ +.|+|.-.+++
T Consensus 119 ~-----~~~--~d~v--~~~~~l~~~~~--~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 119 E-----IKN--ASMV--ILNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred C-----CCC--CCEE--eeecchhhCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 2 111 1333 34556788743 2345566655 77899887775
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.19 E-value=0.51 Score=49.09 Aligned_cols=116 Identities=19% Similarity=0.099 Sum_probs=64.1
Q ss_pred HHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce--e
Q 008153 294 NQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE--F 371 (576)
Q Consensus 294 NqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp--F 371 (576)
.+.|++.+.-.+.-+|+|+|-|.|. +...++++- |.+++|+++.| ..++.+.++ ++..|+. +
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-----~~~~~a~~~----~~~~gl~~rv 201 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-----GAIDLVNEN----AAEKGVADRM 201 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-----HHHHHHHHH----HHhCCccceE
Confidence 5677777765666799999999984 445555542 56899999853 344444333 3444543 4
Q ss_pred EEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEE-EEEecCC
Q 008153 372 EFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKII-TIVEQEA 439 (576)
Q Consensus 372 eF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIv-tlvEqea 439 (576)
+|.. .+..+ .. + ++ ..++.+. .-||+..+ .....+|+.+ +.|+|.-. +++|.-.
T Consensus 202 ~~~~---~d~~~---~~--~-~~-~D~v~~~--~~lh~~~~--~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 202 RGIA---VDIYK---ES--Y-PE-ADAVLFC--RILYSANE--QLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEEe---cCccC---CC--C-CC-CCEEEeE--hhhhcCCh--HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 4443 12111 11 1 11 1344333 34565422 2345677655 78999544 4566543
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=92.62 E-value=4.2 Score=40.05 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=58.4
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-eEE
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-FEF 373 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-FeF 373 (576)
+.++..+.-...-+|+|+|.|.|.-.. .|+.+ .+|..++|||+. +...++....++.+ .+++ .+|
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~--~~~~~~v~gvD~----s~~~~~~a~~~~~~----~~~~~v~~ 100 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEA--VGPEGHVIGLDF----SENMLSVGRQKVKD----AGLHNVEL 100 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHH--hCCCCEEEEEEC----CHHHHHHHHHHHHh----cCCCceEE
Confidence 456666654444589999999998333 33332 134568999994 23445444444432 2332 233
Q ss_pred eeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHH-HHHhcCCcEEEEE
Q 008153 374 RGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVS-SIKAMRPKIITIV 435 (576)
Q Consensus 374 ~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~-~Ir~L~PkIvtlv 435 (576)
.. ...+++. ...+.-..++.+ +.+|++.+ ...+|+ ..+.|+|.-.+++
T Consensus 101 ~~---~d~~~~~-----~~~~~fD~V~~~--~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 101 VH---GNAMELP-----FDDNSFDYVTIG--FGLRNVPD----YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EE---echhcCC-----CCCCCccEEEEe--cccccCCC----HHHHHHHHHHHcCcCeEEEE
Confidence 21 1222221 111111344443 55676633 345555 4578899865554
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=90.22 E-value=23 Score=36.28 Aligned_cols=133 Identities=13% Similarity=0.140 Sum_probs=69.8
Q ss_pred HHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeE
Q 008153 293 ANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFE 372 (576)
Q Consensus 293 ANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFe 372 (576)
....+++.+.-...-+|+|+|.|.|. +...|+.+. +|.-++|||+. +...++...++....++...-..+
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~----S~~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDF----SSEQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEEC----CHHHHHHHHHHhhhhhhccCCCeE
Confidence 34444454443445689999999997 334455442 23458999994 355666555554322222222334
Q ss_pred EeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHH-HHHhcCCcEE-EEEecCCCCCCchhHHHH
Q 008153 373 FRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVS-SIKAMRPKII-TIVEQEANHNSPVFLDRF 450 (576)
Q Consensus 373 F~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~-~Ir~L~PkIv-tlvEqeanhNsp~F~~RF 450 (576)
|.. ...+++. .. ++..=+|-+.+.||++.+ ...+|+ ..|-|+|.-. +++|-. .....|...+
T Consensus 131 ~~~---~d~~~lp-----~~--~~sfD~V~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~d~~--~~~~~~~~~~ 194 (261)
T PLN02233 131 WIE---GDATDLP-----FD--DCYFDAITMGYGLRNVVD----RLKAMQEMYRVLKPGSRVSILDFN--KSTQPFTTSM 194 (261)
T ss_pred EEE---cccccCC-----CC--CCCEeEEEEecccccCCC----HHHHHHHHHHHcCcCcEEEEEECC--CCCcHHHHHH
Confidence 432 2233322 22 223445556677888753 344555 4578899854 344433 2233555555
Q ss_pred H
Q 008153 451 T 451 (576)
Q Consensus 451 ~ 451 (576)
.
T Consensus 195 ~ 195 (261)
T PLN02233 195 Q 195 (261)
T ss_pred H
Confidence 4
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=88.85 E-value=2 Score=36.94 Aligned_cols=106 Identities=23% Similarity=0.268 Sum_probs=61.2
Q ss_pred EEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCCcc
Q 008153 308 HVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPD 387 (576)
Q Consensus 308 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~~~ 387 (576)
+|+|+|-|.|. +...|+++ -|..|+|||+. +...++...+++.+....-+|. |.. .|+ ..
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~---~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~i~--~~~------~d~-~~ 63 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARL---FPGARVVGVDI----SPEMLEIARERAAEEGLSDRIT--FVQ------GDA-EF 63 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHH---HTTSEEEEEES----SHHHHHHHHHHHHHTTTTTTEE--EEE------SCC-HG
T ss_pred EEEEEcCcCCH----HHHHHHhc---CCCCEEEEEeC----CHHHHHHHHHHHHhcCCCCCeE--EEE------Ccc-cc
Confidence 68999999986 44444442 13478999994 4567777666664444344444 432 122 11
Q ss_pred ccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 388 MLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 388 ~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
...... .-+.++.+. +.+|+++.. ..+..+|+.+ +.|+|.-+++++
T Consensus 64 ~~~~~~-~~D~v~~~~-~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 64 DPDFLE-PFDLVICSG-FTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GTTTSS-CEEEEEECS-GSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccCC-CCCEEEECC-Cccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 111111 114555555 566666543 3466777766 678999888764
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=86.49 E-value=7.4 Score=39.35 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=61.8
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEe
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFR 374 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~ 374 (576)
..+++.+.-...-+|+|+|-|.|. +...|+.+- |..++|||+.. ...+ +.|+..++.| .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s----~~~~--------~~a~~~~~~~--~ 77 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSS----PEMV--------AAARERGVDA--R 77 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECC----HHHH--------HHHHhcCCcE--E
Confidence 357777765566789999999994 555676652 34689999952 3333 3344445543 2
Q ss_pred eeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHH-HHhcCCcEEEEEecC
Q 008153 375 GFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSS-IKAMRPKIITIVEQE 438 (576)
Q Consensus 375 ~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~-Ir~L~PkIvtlvEqe 438 (576)
. ...+++.+ .+.-..++.| +.||++.+ .+.+|+. .+.|+|.-.+++...
T Consensus 78 ~---~d~~~~~~------~~~fD~v~~~--~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 78 T---GDVRDWKP------KPDTDVVVSN--AALQWVPE----HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred E---cChhhCCC------CCCceEEEEe--hhhhhCCC----HHHHHHHHHHhCCCCcEEEEEcC
Confidence 1 22233211 1111344444 55788743 2445554 577999977776533
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=84.86 E-value=6.7 Score=35.60 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=53.4
Q ss_pred cCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCC
Q 008153 303 NANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLA 382 (576)
Q Consensus 303 g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~le 382 (576)
..+.-.|+|+|-|.| .| ...|+.+ |. ++||+++. ...++. ..+.+.-.. ..
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~----~~~~~~-----------~~~~~~~~~--~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDIS----PQMIEK-----------RNVVFDNFD--AQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESS----HHHHHH-----------TTSEEEEEE--CH---
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECC----HHHHhh-----------hhhhhhhhh--hh---
Confidence 466779999999999 34 4555544 32 99999852 333322 222222110 00
Q ss_pred CCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEE-EecCCC
Q 008153 383 DLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITI-VEQEAN 440 (576)
Q Consensus 383 dl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtl-vEqean 440 (576)
. .... ++-.=+|-|...|||+.+ ...+|+.| +-|+|.-+++ .+....
T Consensus 71 --~---~~~~--~~~fD~i~~~~~l~~~~d----~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 71 --D---PPFP--DGSFDLIICNDVLEHLPD----PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp --T---HHCH--SSSEEEEEEESSGGGSSH----HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred --h---hhcc--ccchhhHhhHHHHhhccc----HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 0 0111 123445555577899863 55666666 5678865555 444443
No 11
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=84.13 E-value=7.7 Score=37.85 Aligned_cols=111 Identities=15% Similarity=0.260 Sum_probs=63.7
Q ss_pred HHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCcee
Q 008153 292 TANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEF 371 (576)
Q Consensus 292 tANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpF 371 (576)
++...|++++.-...-+|+|+|-|.|.-- ..||.+ | .++|||+.. ...++.+ .+.++.-|++.
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a----~~la~~-g----~~V~~iD~s----~~~l~~a----~~~~~~~~~~v 79 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNS----LYLSLA-G----YDVRAWDHN----PASIASV----LDMKARENLPL 79 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHH----HHHHHC-C----CeEEEEECC----HHHHHHH----HHHHHHhCCCc
Confidence 56778889887655679999999999733 344444 3 479999842 3344333 33445557664
Q ss_pred EEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEE
Q 008153 372 EFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKII 432 (576)
Q Consensus 372 eF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIv 432 (576)
.+... .+.... + .. .-..++.+. .+|++.. ..++.+++.+ +.|+|.-.
T Consensus 80 ~~~~~---d~~~~~---~--~~-~fD~I~~~~--~~~~~~~--~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 80 RTDAY---DINAAA---L--NE-DYDFIFSTV--VFMFLQA--GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred eeEec---cchhcc---c--cC-CCCEEEEec--ccccCCH--HHHHHHHHHHHHHhCCCcE
Confidence 44321 111111 1 11 113444443 3566532 3466777765 67899975
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=81.81 E-value=11 Score=34.88 Aligned_cols=105 Identities=23% Similarity=0.407 Sum_probs=58.7
Q ss_pred CCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-eEEeeeecCCCC
Q 008153 304 ANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-FEFRGFVCNSLA 382 (576)
Q Consensus 304 ~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-FeF~~v~~~~le 382 (576)
.+..+|+|+|.|.|. +...|+.+ -.|..++|||+. +...++. ..+.++..+++ .+|.. .++.
T Consensus 2 ~~~~~iLDlGcG~G~----~~~~l~~~--~~~~~~i~gvD~----s~~~i~~----a~~~~~~~~~~ni~~~~---~d~~ 64 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR----LLIQLAKE--LNPGAKIIGVDI----SEEMIEY----AKKRAKELGLDNIEFIQ---GDIE 64 (152)
T ss_dssp TTTSEEEEET-TTSH----HHHHHHHH--STTTSEEEEEES----SHHHHHH----HHHHHHHTTSTTEEEEE---SBTT
T ss_pred CCCCEEEEecCcCcH----HHHHHHHh--cCCCCEEEEEEC----cHHHHHH----hhcccccccccccceEE---eehh
Confidence 356789999999997 34444421 123466999993 4455543 33456667776 56653 3444
Q ss_pred CCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHH-HHHhcCCcEEEEE
Q 008153 383 DLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVS-SIKAMRPKIITIV 435 (576)
Q Consensus 383 dl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~-~Ir~L~PkIvtlv 435 (576)
++... +. +.-..+..+ ..+|++.+ ...+|. ..+.|+|.-++++
T Consensus 65 ~l~~~-~~---~~~D~I~~~--~~l~~~~~----~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 65 DLPQE-LE---EKFDIIISN--GVLHHFPD----PEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp CGCGC-SS---TTEEEEEEE--STGGGTSH----HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccc-cC---CCeeEEEEc--CchhhccC----HHHHHHHHHHHcCCCcEEEE
Confidence 44422 22 111344444 44566633 334444 5688898877664
No 13
>PF05269 Phage_CII: Bacteriophage CII protein; InterPro: IPR007933 The CII protein is a transcription activator, conserved in bacteriophage lambda and related phages, that plays a key role in the decision between lytic or lysogenic phage development. CII is regulated at multiple levels including transcription, translation initiation, mRNA stability, and proteolysis []. Conditions that stabilise cII favour lysogenic development. The lambda CII protein activates three specific promoters, binding to direct repeat sequences rather than the more usual inverted repeats. Structurally, CII is a homotetramer where each monomer is composed of four alpha helices and a disordered C terminus [, ]. The alpha helical region is responsible for DNA binding and multimerisation. The homotetramer has an unusual spatial arrangement that allows recognition of the direct repeat sequences.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1ZS4_C 1ZPQ_C 1XWR_A.
Probab=79.54 E-value=1 Score=39.71 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=24.4
Q ss_pred chhhhhhcCCccccccHHHHHHHHHHH
Q 008153 42 MDELLEVLGYKVRSSEMADVAQKLEQL 68 (576)
Q Consensus 42 ~d~~la~~gykv~ssd~~~vaqkle~l 68 (576)
|--|||+|||+|..+||+++|+++.++
T Consensus 51 ~a~lLa~L~~~v~~~~i~~~~~~~~~~ 77 (91)
T PF05269_consen 51 MAMLLAALELGVEDSEIARVAKQAAEI 77 (91)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 778999999999999999999988763
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=78.86 E-value=10 Score=38.47 Aligned_cols=180 Identities=19% Similarity=0.233 Sum_probs=65.5
Q ss_pred HHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEee
Q 008153 296 AILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRG 375 (576)
Q Consensus 296 AILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~ 375 (576)
.+++.+...+-.+|+|.+.|.|--+..| +.+.+ |.-+|||++. +..-|+...+|+.+.... +| +|..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~~--~~~~v~~vD~----s~~ML~~a~~k~~~~~~~-~i--~~v~ 104 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRVG--PNGKVVGVDI----SPGMLEVARKKLKREGLQ-NI--EFVQ 104 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGSS-----EEEEEES-----HHHHHHHHHHHHHTT---SE--EEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHCC--CccEEEEecC----CHHHHHHHHHHHHhhCCC-Ce--eEEE
Confidence 4455566666779999999999744444 43322 4459999984 456777777777655433 33 3332
Q ss_pred eecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHH-HHHhcCCcEEEE-EecCCCCCCchhHHHHHHH
Q 008153 376 FVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVS-SIKAMRPKIITI-VEQEANHNSPVFLDRFTEA 453 (576)
Q Consensus 376 v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~-~Ir~L~PkIvtl-vEqeanhNsp~F~~RF~EA 453 (576)
...+++ ... ++..=+|-|.|.||.+.+ ++..|+ ..|-|+|.-.++ +|-.-..| .++. ..
T Consensus 105 ---~da~~l-----p~~--d~sfD~v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~~---~~ 165 (233)
T PF01209_consen 105 ---GDAEDL-----PFP--DNSFDAVTCSFGLRNFPD----RERALREMYRVLKPGGRLVILEFSKPRN--PLLR---AL 165 (233)
T ss_dssp ----BTTB-------S---TT-EEEEEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEEEEEB-SS--HHHH---HH
T ss_pred ---cCHHHh-----cCC--CCceeEEEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEeeccCCCC--chhh---ce
Confidence 222332 333 346778889999999865 334444 557889976444 55322221 2333 33
Q ss_pred HHHHHHHhh-hhhccCCCCCcHHHHHHHHHhhcccchhhcccCCCCcccccchhhHHHHHhcCCCccccCCh
Q 008153 454 LHYYSSLFD-SLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGS 524 (576)
Q Consensus 454 L~yYsalFD-SLea~~~~~~s~~r~~~E~~lgreI~NiVAcEG~eRvERhE~~~qWr~Rm~~AGF~pv~ls~ 524 (576)
..+|...+= -+...+ . .++ ..=.||.+-|.+.... ++-...|+.+||+.|....
T Consensus 166 ~~~y~~~ilP~~g~l~-~---~~~-~~Y~yL~~Si~~f~~~------------~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 166 YKFYFKYILPLIGRLL-S---GDR-EAYRYLPESIRRFPSP------------EELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp HHH---------------------------------------------------------------------
T ss_pred eeeeeccccccccccc-c---ccc-cccccccccccccccc------------ccccccccccccccccccc
Confidence 334444322 122211 1 111 1124666666654432 2445568899999776543
No 15
>PRK06202 hypothetical protein; Provisional
Probab=77.75 E-value=34 Score=33.95 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=56.0
Q ss_pred ccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCC
Q 008153 302 NNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSL 381 (576)
Q Consensus 302 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~l 381 (576)
...+...|+|+|-|.|. +...|.....+ ..|..+||||++. .+.++....+. ..-++.|..- .+.
T Consensus 57 ~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s----~~~l~~a~~~~----~~~~~~~~~~--~~~-- 121 (232)
T PRK06202 57 SADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPD----PRAVAFARANP----RRPGVTFRQA--VSD-- 121 (232)
T ss_pred CCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCC----HHHHHHHHhcc----ccCCCeEEEE--ecc--
Confidence 33456789999999996 33333222211 2345789999953 34444333221 1234544332 222
Q ss_pred CCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEE
Q 008153 382 ADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIV 435 (576)
Q Consensus 382 edl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlv 435 (576)
++.. .++ ..=+|-|.+.|||+.+. .+..+|+.+.++.-..+++.
T Consensus 122 -~l~~-----~~~--~fD~V~~~~~lhh~~d~--~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 122 -ELVA-----EGE--RFDVVTSNHFLHHLDDA--EVVRLLADSAALARRLVLHN 165 (232)
T ss_pred -cccc-----cCC--CccEEEECCeeecCChH--HHHHHHHHHHHhcCeeEEEe
Confidence 2211 111 23344444568998542 35678887766554555443
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=77.61 E-value=6.1 Score=33.87 Aligned_cols=97 Identities=23% Similarity=0.378 Sum_probs=51.1
Q ss_pred EEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCCccc
Q 008153 309 VIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDM 388 (576)
Q Consensus 309 IIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~~~~ 388 (576)
|+|+|-|.|.-=..|.+.+ . .+ |..++|||+. +...|+...++..+ .+++.+|.. ..+.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~-~~-~~~~~~gvD~----s~~~l~~~~~~~~~----~~~~~~~~~---~D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--D-AG-PSSRVIGVDI----SPEMLELAKKRFSE----DGPKVRFVQ---ADARDLP--- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-----HHHHHHHHHHSHH----TTTTSEEEE---SCTTCHH---
T ss_pred CEEeecCCcHHHHHHHHHh--h-hc-ccceEEEEEC----CHHHHHHHHHhchh----cCCceEEEE---CCHhHCc---
Confidence 7899999998666666665 1 12 6699999994 45566554444333 455666642 2333332
Q ss_pred cccCCCCCce-EEEEehhhhhhccCCCChHHHHHHHHHh-cCC
Q 008153 389 LDIRPPEVET-VAVNSVFELHRLLARPGGIEKVVSSIKA-MRP 429 (576)
Q Consensus 389 L~lr~~~~Ea-LaVN~~~~Lh~L~~~~~~~d~vL~~Ir~-L~P 429 (576)
.. ++.. +||++...+||+.+ ..+..+|+.+.+ ++|
T Consensus 63 --~~--~~~~D~v~~~~~~~~~~~~--~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 63 --FS--DGKFDLVVCSGLSLHHLSP--EELEALLRRIARLLRP 99 (101)
T ss_dssp --HH--SSSEEEEEE-TTGGGGSSH--HHHHHHHHHHHHTEEE
T ss_pred --cc--CCCeeEEEEcCCccCCCCH--HHHHHHHHHHHHHhCC
Confidence 11 1133 44444455888532 457777777644 344
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=76.96 E-value=30 Score=38.26 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=70.6
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEe
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFR 374 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~ 374 (576)
..|++.+.....-+|+|+|-|.|. +...|+.+ + -++|||+. +...++.. .++. . ..-..+|.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~----~~~~la~~-~----~~v~giD~----s~~~l~~a-~~~~---~-~~~~i~~~ 88 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGR----FTGELAKK-A----GQVIALDF----IESVIKKN-ESIN---G-HYKNVKFM 88 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCH----HHHHHHhh-C----CEEEEEeC----CHHHHHHH-HHHh---c-cCCceEEE
Confidence 456666664444489999999996 44445544 2 27899984 23444332 1111 1 11122332
Q ss_pred eeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEecCCCCC--------Cch
Q 008153 375 GFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVEQEANHN--------SPV 445 (576)
Q Consensus 375 ~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvEqeanhN--------sp~ 445 (576)
. ....+. .+.... +..=+|-|.+.||++.+ ..+..+|..+ |-|+|.-+++....+-++ .|.
T Consensus 89 ~---~d~~~~---~~~~~~--~~fD~I~~~~~l~~l~~--~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~ 158 (475)
T PLN02336 89 C---ADVTSP---DLNISD--GSVDLIFSNWLLMYLSD--KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPT 158 (475)
T ss_pred E---eccccc---ccCCCC--CCEEEEehhhhHHhCCH--HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCC
Confidence 2 112111 111211 13344455567888854 2356777766 558999887763333222 233
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 008153 446 FLDRFTEALHYYSSLFDS 463 (576)
Q Consensus 446 F~~RF~EAL~yYsalFDS 463 (576)
+.. ...+|..+|..
T Consensus 159 ~~~----~~~~~~~~f~~ 172 (475)
T PLN02336 159 HYR----EPRFYTKVFKE 172 (475)
T ss_pred eec----ChHHHHHHHHH
Confidence 321 14577777765
No 18
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=76.06 E-value=23 Score=36.78 Aligned_cols=139 Identities=19% Similarity=0.289 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhhc----cCCeeEEEecccCCCc-chHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHH
Q 008153 288 FAHFTANQAILEAFN----NANRVHVIDFSLKQGM-QWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQ 362 (576)
Q Consensus 288 fahftANqAILEA~~----g~~~VHIIDf~I~~G~-QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~ 362 (576)
-+++++-..||+.+. +-+--+|+|||-|-|. =|.. .+.+ +-..++|.|+. ...+.++|++|.+
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~-----s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDR-----SPEMLELAKRLLR 79 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecC-----CHHHHHHHHHHHh
Confidence 367788888888885 3455699999999874 2321 2222 12468899984 3455677887764
Q ss_pred HHhHcCceeEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEecCCCC
Q 008153 363 LADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVEQEANH 441 (576)
Q Consensus 363 fA~slgVpFeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvEqeanh 441 (576)
-...... .+++. .+......+.+. .-+++ .+.|-.|.+ ..+..+++.+ +.++| ++|+||..-.
T Consensus 80 ~~~~~~~-~~~~~-------~~~~~~~~~~~~--DLvi~--s~~L~EL~~--~~r~~lv~~LW~~~~~-~LVlVEpGt~- 143 (274)
T PF09243_consen 80 AGPNNRN-AEWRR-------VLYRDFLPFPPD--DLVIA--SYVLNELPS--AARAELVRSLWNKTAP-VLVLVEPGTP- 143 (274)
T ss_pred ccccccc-chhhh-------hhhcccccCCCC--cEEEE--ehhhhcCCc--hHHHHHHHHHHHhccC-cEEEEcCCCh-
Confidence 3221110 01111 111111222221 22222 233444433 5677788877 44566 8888886544
Q ss_pred CCchhHHHHHHHH
Q 008153 442 NSPVFLDRFTEAL 454 (576)
Q Consensus 442 Nsp~F~~RF~EAL 454 (576)
.+-.++.+.++.|
T Consensus 144 ~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 144 AGFRRIAEARDQL 156 (274)
T ss_pred HHHHHHHHHHHHH
Confidence 4556777777766
No 19
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=75.40 E-value=26 Score=37.68 Aligned_cols=116 Identities=15% Similarity=0.239 Sum_probs=66.4
Q ss_pred CeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHc---CceeEEee--eecC
Q 008153 305 NRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTI---GVEFEFRG--FVCN 379 (576)
Q Consensus 305 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~sl---gVpFeF~~--v~~~ 379 (576)
...+|+|++.|.|.= |.+-...+. =++.||+. ....+++..+|..++-+.. ...+.|.. +.++
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~i-----~~~vg~Di----s~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D 129 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAKI-----KHYVGIDI----SEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAAD 129 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES-----HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEEST
T ss_pred CCCeEEEecCCCchh---HHHHHhcCC-----CEEEEEeC----CHHHHHHHHHHHHHhccccccccccccchhheeccc
Confidence 678999999998862 333332221 35778874 4678999998886655332 22233322 1222
Q ss_pred CCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEE
Q 008153 380 SLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITI 434 (576)
Q Consensus 380 ~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtl 434 (576)
....--... +.+.....=+|+|.|.||...........+|+.| +.|+|.-+.+
T Consensus 130 ~f~~~l~~~--~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 130 CFSESLREK--LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TCCSHHHCT--SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cccchhhhh--ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 211100111 1211236889999999999988666677777776 7789987766
No 20
>PRK08317 hypothetical protein; Provisional
Probab=75.22 E-value=81 Score=30.37 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=28.0
Q ss_pred HHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCC
Q 008153 297 ILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGP 344 (576)
Q Consensus 297 ILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~ 344 (576)
+++.+.-...-+|+|+|.|.|. |. ..++.+- +|.-++|||+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~ 52 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDR 52 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeC
Confidence 5666665566689999999885 33 3344332 24568999984
No 21
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=74.90 E-value=1.1e+02 Score=31.64 Aligned_cols=154 Identities=20% Similarity=0.262 Sum_probs=91.8
Q ss_pred hhcchhhHH-HHHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHH
Q 008153 281 ETCPYLKFA-HFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWK 359 (576)
Q Consensus 281 e~~P~~kfa-hftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~r 359 (576)
...+++.|+ |.+=+++..+.+.-.+--+|+|.+-|-|- | .-.|+++-| .-+|||++. +...|....+|
T Consensus 26 ~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd-~---a~~~~k~~g---~g~v~~~D~----s~~ML~~a~~k 94 (238)
T COG2226 26 LMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD-M---ALLLAKSVG---TGEVVGLDI----SESMLEVAREK 94 (238)
T ss_pred hhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH-H---HHHHHHhcC---CceEEEEEC----CHHHHHHHHHH
Confidence 355677775 56677777777654477899999998885 2 333444433 689999994 45666665556
Q ss_pred HHHHHhHcCce-eEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEec
Q 008153 360 LAQLADTIGVE-FEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVEQ 437 (576)
Q Consensus 360 L~~fA~slgVp-FeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvEq 437 (576)
+.+ .|+. ++|.. ...+.|. .. ++-.=+|-+.|.||++.+ ++++|+-+ |=|+|...++|-.
T Consensus 95 ~~~----~~~~~i~fv~---~dAe~LP-----f~--D~sFD~vt~~fglrnv~d----~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 95 LKK----KGVQNVEFVV---GDAENLP-----FP--DNSFDAVTISFGLRNVTD----IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhc----cCccceEEEE---echhhCC-----CC--CCccCEEEeeehhhcCCC----HHHHHHHHHHhhcCCeEEEEEE
Confidence 543 2322 45542 2233332 22 346667888899998864 66777655 6789999777633
Q ss_pred CCCCCCchhHHHHHHHHH-HHHH-Hhhhhhcc
Q 008153 438 EANHNSPVFLDRFTEALH-YYSS-LFDSLEGS 467 (576)
Q Consensus 438 eanhNsp~F~~RF~EAL~-yYsa-lFDSLea~ 467 (576)
=..+..+.| ..+++ ||.. ++=.+...
T Consensus 157 ~~~p~~~~~----~~~~~~~~~~~v~P~~g~~ 184 (238)
T COG2226 157 FSKPDNPVL----RKAYILYYFKYVLPLIGKL 184 (238)
T ss_pred cCCCCchhh----HHHHHHHHHHhHhhhhcee
Confidence 333444333 33333 4444 44444444
No 22
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=74.52 E-value=51 Score=33.09 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=61.9
Q ss_pred HHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeE
Q 008153 293 ANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFE 372 (576)
Q Consensus 293 ANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFe 372 (576)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+.. ...++...+++ -..+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s----~~~i~~a~~~~--------~~~~ 79 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSS----PAMLAEARSRL--------PDCQ 79 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECC----HHHHHHHHHhC--------CCCe
Confidence 45667777765666789999999984 345566552 34689999943 33443333221 1233
Q ss_pred EeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEec
Q 008153 373 FRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQ 437 (576)
Q Consensus 373 F~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvEq 437 (576)
|.. ...+++.+. ..-+.++ |.+.||++.+ ....+-+..+.|+|.-.+++..
T Consensus 80 ~~~---~d~~~~~~~------~~fD~v~--~~~~l~~~~d---~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 80 FVE---ADIASWQPP------QALDLIF--ANASLQWLPD---HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEE---CchhccCCC------CCccEEE--EccChhhCCC---HHHHHHHHHHhcCCCcEEEEEC
Confidence 432 122222111 1113444 4456787753 2333444457789998887754
No 23
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=73.86 E-value=47 Score=35.43 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=57.6
Q ss_pred CeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHh-Hc-CceeEEeeeecCCCC
Q 008153 305 NRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAD-TI-GVEFEFRGFVCNSLA 382 (576)
Q Consensus 305 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~-sl-gVpFeF~~v~~~~le 382 (576)
+...|+|+|-|.|. +...|+.+ | .++|||+. +...++...++..+.-. .. +...+|.. ..++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~----S~~ml~~A~~~~~~~~~~~~~~~~~~f~~---~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDI----SAAMVAEAERRAKEALAALPPEVLPKFEA---NDLE 207 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEEC----CHHHHHHHHHHHHhcccccccccceEEEE---cchh
Confidence 45689999999887 45556654 3 48999984 35566655555432100 00 22344542 2233
Q ss_pred CCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEE
Q 008153 383 DLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIV 435 (576)
Q Consensus 383 dl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlv 435 (576)
+++ +.-+ +|-|...|||+.+ .....+++.++.+.|+.+++.
T Consensus 208 ~l~--------~~fD--~Vv~~~vL~H~p~--~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 208 SLS--------GKYD--TVTCLDVLIHYPQ--DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hcC--------CCcC--EEEEcCEEEecCH--HHHHHHHHHHHhhcCCEEEEE
Confidence 321 1112 2224445666644 235678888888888887774
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=72.81 E-value=36 Score=35.27 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=54.5
Q ss_pred EEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCCcc
Q 008153 308 HVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPD 387 (576)
Q Consensus 308 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~~~ 387 (576)
+|+|+|-|.|. +...||.+ | .++|||+. +...++. +.+.|+..++.+++... |+...
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~----s~~ai~~----~~~~~~~~~l~v~~~~~------D~~~~ 179 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDI----NQQSLEN----LQEIAEKENLNIRTGLY------DINSA 179 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEEC----CHHHHHH----HHHHHHHcCCceEEEEe------chhcc
Confidence 89999999987 44455654 3 58999984 3344443 33445666776665432 22211
Q ss_pred ccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEE
Q 008153 388 MLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIIT 433 (576)
Q Consensus 388 ~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvt 433 (576)
.+ ++.-..++.+ +.||++.. ..+..+|+.+ +.|+|.-+.
T Consensus 180 ~~---~~~fD~I~~~--~vl~~l~~--~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 180 SI---QEEYDFILST--VVLMFLNR--ERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred cc---cCCccEEEEc--chhhhCCH--HHHHHHHHHHHHhcCCCcEE
Confidence 11 1111344444 34677632 3466777665 678997763
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=72.48 E-value=45 Score=35.72 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=55.4
Q ss_pred eeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCc--eeEEeeeecCCCCC
Q 008153 306 RVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGV--EFEFRGFVCNSLAD 383 (576)
Q Consensus 306 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgV--pFeF~~v~~~~led 383 (576)
.-.|+|+|.|.|. +...|+.+ | .++|||+. +...++...++ ++..++ ..+|.. .+.++
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~----s~~~i~~Ar~~----~~~~~~~~~i~~~~---~dae~ 191 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDA----VDKNVKIARLH----ADMDPVTSTIEYLC---TTAEK 191 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeC----CHHHHHHHHHH----HHhcCcccceeEEe---cCHHH
Confidence 3479999999998 45566643 3 48999984 23444333222 111111 334442 22333
Q ss_pred CCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 384 LEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 384 l~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
+.. .. +..=+|-|..-|||+.+ .+.+|+.+ +-|+|.-.+++.
T Consensus 192 l~~-----~~--~~FD~Vi~~~vLeHv~d----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 LAD-----EG--RKFDAVLSLEVIEHVAN----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hhh-----cc--CCCCEEEEhhHHHhcCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 321 11 12334555667899864 34566666 556998887764
No 26
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=70.46 E-value=88 Score=30.96 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=55.1
Q ss_pred EEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCCcc
Q 008153 308 HVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPD 387 (576)
Q Consensus 308 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~~~ 387 (576)
.|+|+|.|.|..-..| +.+- |..++|||+. +...++....++. ++. |.. ..+.+ +
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~---~~~~v~giDi----S~~~l~~A~~~~~------~~~--~~~---~d~~~--~- 100 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLL---PFKHIYGVEI----NEYAVEKAKAYLP------NIN--IIQ---GSLFD--P- 100 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhC---CCCeEEEEEC----CHHHHHHHHhhCC------CCc--EEE---eeccC--C-
Confidence 4999999999644444 3321 2368999984 3455554433221 222 221 11111 1
Q ss_pred ccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEecCC
Q 008153 388 MLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEA 439 (576)
Q Consensus 388 ~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvEqea 439 (576)
... +..=+|-+...|||+. +..+..+++.+.+..-+.++++|-..
T Consensus 101 ---~~~--~sfD~V~~~~vL~hl~--p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 101 ---FKD--NFFDLVLTKGVLIHIN--PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCC--CCEEEEEECChhhhCC--HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 111 1222333455577773 45677888888777777888888643
No 27
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=69.62 E-value=35 Score=37.43 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=58.8
Q ss_pred EEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCCcc
Q 008153 308 HVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPD 387 (576)
Q Consensus 308 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~~~ 387 (576)
+|+|+|.|.|. +--.|+.+. |..++|+|+. +...++.+.+++......-.-.++|.. .+-++++...
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~----S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~ 297 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDE----SPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPF 297 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEEC----CHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCC
Confidence 79999999997 444555542 5689999994 456666655555333111011344432 2222222211
Q ss_pred ccccCCCCCceEEEEehhhhhhccCCCChHHHHHH-HHHhcCCcEEEEEec
Q 008153 388 MLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVS-SIKAMRPKIITIVEQ 437 (576)
Q Consensus 388 ~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~-~Ir~L~PkIvtlvEq 437 (576)
.-..++.|-.|+..+-... .....+++ .-+-|+|.-...++.
T Consensus 298 -------~fDlIlsNPPfh~~~~~~~-~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 -------RFNAVLCNPPFHQQHALTD-NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -------CEEEEEECcCcccCccCCH-HHHHHHHHHHHHhcccCCEEEEEE
Confidence 1257777776643221111 12344554 456789988777653
No 28
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=69.61 E-value=25 Score=35.13 Aligned_cols=110 Identities=24% Similarity=0.298 Sum_probs=57.7
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEe
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFR 374 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~ 374 (576)
..+++++.=...-+|||+|-+.|. +..+|+++ =|.+|+|..+.|. .++. ++. .=..+|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~---~P~l~~~v~Dlp~-----v~~~-~~~--------~~rv~~~ 148 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARA---YPNLRATVFDLPE-----VIEQ-AKE--------ADRVEFV 148 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHH---STTSEEEEEE-HH-----HHCC-HHH--------TTTEEEE
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHH---CCCCcceeeccHh-----hhhc-ccc--------ccccccc
Confidence 456666665556689999999995 33444433 2679999999652 2211 111 2223333
Q ss_pred eeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCc---EEEEEecCCC
Q 008153 375 GFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPK---IITIVEQEAN 440 (576)
Q Consensus 375 ~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~Pk---IvtlvEqean 440 (576)
+ .++ - ..+.. -+++.+. .-||...+ .....+|+.+ +.|+|. .++|+|.=.+
T Consensus 149 ~---gd~---f-~~~P~----~D~~~l~--~vLh~~~d--~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 149 P---GDF---F-DPLPV----ADVYLLR--HVLHDWSD--EDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp E---S-T---T-TCCSS----ESEEEEE--SSGGGS-H--HHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred c---ccH---H-hhhcc----ccceeee--hhhhhcch--HHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 2 111 1 11111 1355554 44676654 2445666665 778886 6666775444
No 29
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=67.83 E-value=23 Score=36.53 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=35.3
Q ss_pred cCCeeEEEecccCCCcchHHHHHHHhcCCC--CCCeeeEeecCCCCCCChHHHHHHHH
Q 008153 303 NANRVHVIDFSLKQGMQWPALMQALALRPG--GPPAFRLTGIGPPQPDNTDALQQVGW 358 (576)
Q Consensus 303 g~~~VHIIDf~I~~G~QWpsLiqaLA~Rpg--GPP~LRITgI~~p~~~~~~~L~etG~ 358 (576)
..+.++|.|.|.+.|--.-+|--.|+..-. ..+.++|+|++. +...|+...+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di----s~~~L~~Ar~ 150 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI----DLKALEKARA 150 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC----CHHHHHHHHc
Confidence 446799999999999877666555554321 234689999994 3455655444
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=67.54 E-value=1.2e+02 Score=29.09 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce
Q 008153 291 FTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE 370 (576)
Q Consensus 291 ftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp 370 (576)
...-+.+++.+.......|+|+|-+.|. +...++.+ +|+..++++|+. +...++.+..++. .+-.
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~----~~~~~~~~~~~~~-----~~~~ 89 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDF----SSEMLEVAKKKSE-----LPLN 89 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEEC----CHHHHHHHHHHhc-----cCCC
Confidence 3344566666665567899999999886 33344433 233478999984 2344444444432 2222
Q ss_pred eEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHH-HHhcCCcEEEE-EecC
Q 008153 371 FEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSS-IKAMRPKIITI-VEQE 438 (576)
Q Consensus 371 FeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~-Ir~L~PkIvtl-vEqe 438 (576)
.+|.. .+..++. ...+ ..=+|-+.+.+|++.+ .+.+|.. .+.|+|.-.++ +|..
T Consensus 90 i~~~~---~d~~~~~-----~~~~--~~D~i~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 90 IEFIQ---ADAEALP-----FEDN--SFDAVTIAFGLRNVTD----IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ceEEe---cchhcCC-----CCCC--cEEEEEEeeeeCCccc----HHHHHHHHHHHcCCCcEEEEEEec
Confidence 33432 1222221 1111 2333334455676533 3445554 46678886655 4543
No 31
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=66.55 E-value=69 Score=33.53 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=68.9
Q ss_pred HHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeee
Q 008153 297 ILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGF 376 (576)
Q Consensus 297 ILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v 376 (576)
|.+++. ....|||+|-|.|.-=..|++++.. ..++|+|+. +.+.|+...++|.+- --++++++ +
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDi----S~~mL~~a~~~l~~~--~p~~~v~~--i 120 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDI----SADALKESAAALAAD--YPQLEVHG--I 120 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEEC----CHHHHHHHHHHHHhh--CCCceEEE--E
Confidence 555553 2347999999999766677777742 378999984 467788887777541 12444443 2
Q ss_pred ecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 377 VCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 377 ~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
.. ...+.. .+.-.......+++.+...++++. +.....+|+.| +.|+|.-..++.
T Consensus 121 ~g-D~~~~~--~~~~~~~~~~~~~~~~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 121 CA-DFTQPL--ALPPEPAAGRRLGFFPGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EE-cccchh--hhhcccccCCeEEEEecccccCCC--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 22 222210 010000011356666555667663 23456788877 568997666543
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=66.31 E-value=64 Score=31.48 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-e
Q 008153 293 ANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-F 371 (576)
Q Consensus 293 ANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-F 371 (576)
+++.+++.+.....-.|+|+|.|.|. +...||.+ | .++|||+. +...++...++ ++..++. .
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~----S~~~i~~a~~~----~~~~~~~~v 80 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDK----NPMSIANLERI----KAAENLDNL 80 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeC----CHHHHHHHHHH----HHHcCCCcc
Confidence 34566666655455689999999997 33446654 2 48999984 33444433322 3334443 3
Q ss_pred EEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEE
Q 008153 372 EFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITI 434 (576)
Q Consensus 372 eF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtl 434 (576)
++.. ..+.++. + . +.-..++.+ +.+|++. +..+..+++.+ +.|+|.-.++
T Consensus 81 ~~~~---~d~~~~~---~--~-~~fD~I~~~--~~~~~~~--~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 81 HTAV---VDLNNLT---F--D-GEYDFILST--VVLMFLE--AKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred eEEe---cChhhCC---c--C-CCcCEEEEe--cchhhCC--HHHHHHHHHHHHHHcCCCcEEE
Confidence 3332 2233322 1 1 111344444 3356653 23466677655 7789998744
No 33
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=65.54 E-value=56 Score=32.57 Aligned_cols=111 Identities=24% Similarity=0.276 Sum_probs=66.2
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEe
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFR 374 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~ 374 (576)
..|++|+.--+.--++|+|-|.|.= + --||.+ | +.+|+++. +...++ +|.+.|+.-+++.+..
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN--a--lyLA~~-G----~~VtAvD~----s~~al~----~l~~~a~~~~l~i~~~ 82 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN--A--LYLASQ-G----FDVTAVDI----SPVALE----KLQRLAEEEGLDIRTR 82 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH--H--HHHHHT-T-----EEEEEES----SHHHHH----HHHHHHHHTT-TEEEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH--H--HHHHHC-C----CeEEEEEC----CHHHHH----HHHHHHhhcCceeEEE
Confidence 4577887766667899999999851 1 225544 2 78999983 444453 5778899999997766
Q ss_pred eeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHH-hcCCcEEEEE
Q 008153 375 GFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIK-AMRPKIITIV 435 (576)
Q Consensus 375 ~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir-~L~PkIvtlv 435 (576)
.. |+....+ . . +.=+|.+...+++|.. ..++.++..++ .++|.-+.+.
T Consensus 83 ~~------Dl~~~~~--~-~--~yD~I~st~v~~fL~~--~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 83 VA------DLNDFDF--P-E--EYDFIVSTVVFMFLQR--ELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp E-------BGCCBS---T-T--TEEEEEEESSGGGS-G--GGHHHHHHHHHHTEEEEEEEEE
T ss_pred Ee------cchhccc--c-C--CcCEEEEEEEeccCCH--HHHHHHHHHHHhhcCCcEEEEE
Confidence 42 3322222 1 1 4445556555677643 46788888775 5799755443
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=63.37 E-value=1.3e+02 Score=30.81 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce
Q 008153 291 FTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE 370 (576)
Q Consensus 291 ftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp 370 (576)
+-+.+.|++.+.-...-+|+|+|-+.|.- ...|+.+.+ .++|||+. +...++....+... .-.
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~----a~~la~~~~----~~v~giD~----s~~~~~~a~~~~~~-----~~~ 100 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGG----CKYINEKYG----AHVHGVDI----CEKMVNIAKLRNSD-----KNK 100 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChh----hHHHHhhcC----CEEEEEEC----CHHHHHHHHHHcCc-----CCc
Confidence 34567778877656667899999999873 234444332 58999984 23444443333221 112
Q ss_pred eEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEE
Q 008153 371 FEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIV 435 (576)
Q Consensus 371 FeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlv 435 (576)
.+|.. ....+. ....+ ..=+|-+...++|+.. .....+|+.+ +-|+|.-.+++
T Consensus 101 i~~~~---~D~~~~-----~~~~~--~FD~V~s~~~l~h~~~--~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 101 IEFEA---NDILKK-----DFPEN--TFDMIYSRDAILHLSY--ADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred eEEEE---CCcccC-----CCCCC--CeEEEEEhhhHHhCCH--HHHHHHHHHHHHHcCCCcEEEE
Confidence 33332 111111 11111 2222333344556531 2356677655 77899877665
No 35
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=62.24 E-value=18 Score=33.46 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=28.0
Q ss_pred hccCCeeEEEecccCCCcchHHHHHHHhcCCC-CCCeeeEeecCC
Q 008153 301 FNNANRVHVIDFSLKQGMQWPALMQALALRPG-GPPAFRLTGIGP 344 (576)
Q Consensus 301 ~~g~~~VHIIDf~I~~G~QWpsLiqaLA~Rpg-GPP~LRITgI~~ 344 (576)
-...+..+|||||-|.|. |=+.|+..-. -.|.++|+||+.
T Consensus 21 ~~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~ 61 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDC 61 (141)
T ss_pred hccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEEC
Confidence 345789999999999996 4444554100 027799999984
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=61.02 E-value=47 Score=26.89 Aligned_cols=93 Identities=25% Similarity=0.257 Sum_probs=49.9
Q ss_pred EecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCCcccc
Q 008153 310 IDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDML 389 (576)
Q Consensus 310 IDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~~~~L 389 (576)
+|+|.|.|.....|.+. +-.++|++++ +...++...+ ..+..+++ |. ..+.+++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~----~~~~~~~~~~----~~~~~~~~--~~---~~d~~~l----- 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDI----SEEMLEQARK----RLKNEGVS--FR---QGDAEDL----- 54 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-----HHHHHHHHH----HTTTSTEE--EE---ESBTTSS-----
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeC----CHHHHHHHHh----cccccCch--he---eehHHhC-----
Confidence 58888888755554443 3478999984 3344443333 33444555 32 2233333
Q ss_pred ccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEE
Q 008153 390 DIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITI 434 (576)
Q Consensus 390 ~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtl 434 (576)
... ++-.=+|-+...+|++ .....+|+.+ |-|+|.-+.+
T Consensus 55 ~~~--~~sfD~v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 55 PFP--DNSFDVVFSNSVLHHL----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SS---TT-EEEEEEESHGGGS----SHHHHHHHHHHHHEEEEEEEE
T ss_pred ccc--cccccccccccceeec----cCHHHHHHHHHHHcCcCeEEe
Confidence 222 2245466666778887 2355555554 7778876654
No 37
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=60.70 E-value=92 Score=30.53 Aligned_cols=117 Identities=19% Similarity=0.224 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHhhc--cCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHH
Q 008153 287 KFAHFTANQAILEAFN--NANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLA 364 (576)
Q Consensus 287 kfahftANqAILEA~~--g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA 364 (576)
..+|-...+.+++.+. ..+.-+|+|+|-|.|. +...|+.+ + .++|||+. +.+.+....+++..
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~---~~v~gvD~----s~~~i~~a~~~~~~-- 99 (219)
T TIGR02021 35 REGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G---AIVKAVDI----SEQMVQMARNRAQG-- 99 (219)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C---CEEEEEEC----CHHHHHHHHHHHHh--
Confidence 3456666777787776 3456799999999985 55666654 1 38999984 34455444444432
Q ss_pred hHcCc--eeEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHh-cCCcEEEEE
Q 008153 365 DTIGV--EFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKA-MRPKIITIV 435 (576)
Q Consensus 365 ~slgV--pFeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~-L~PkIvtlv 435 (576)
.++ ..+|.. ..++++. . .-+.++. ...++++.. ..+..+++.+.. ++|.+++..
T Consensus 100 --~~~~~~i~~~~---~d~~~~~------~--~fD~ii~--~~~l~~~~~--~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 100 --RDVAGNVEFEV---NDLLSLC------G--EFDIVVC--MDVLIHYPA--SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --cCCCCceEEEE---CChhhCC------C--CcCEEEE--hhHHHhCCH--HHHHHHHHHHHHHhCCCEEEEE
Confidence 232 345542 2233322 1 1133333 334555522 235566666654 566665554
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=60.38 E-value=1.1e+02 Score=33.88 Aligned_cols=113 Identities=11% Similarity=0.032 Sum_probs=62.8
Q ss_pred HHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEE
Q 008153 294 NQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEF 373 (576)
Q Consensus 294 NqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF 373 (576)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.. ...++...++. ...+...+|
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS----~~~l~~A~~~~----~~~~~~v~~ 318 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS----VNMISFALERA----IGRKCSVEF 318 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC----HHHHHHHHHHh----hcCCCceEE
Confidence 3556666543345689999999995 4455676553 489999953 34444333322 233334555
Q ss_pred eeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHH-HHhcCCcEEEEEe
Q 008153 374 RGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSS-IKAMRPKIITIVE 436 (576)
Q Consensus 374 ~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~-Ir~L~PkIvtlvE 436 (576)
... .+.++. +. ++..=+|-|...++|+.+ .+.+|+. .|.|+|.-.+++.
T Consensus 319 ~~~---d~~~~~-----~~--~~~fD~I~s~~~l~h~~d----~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 319 EVA---DCTKKT-----YP--DNSFDVIYSRDTILHIQD----KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEc---CcccCC-----CC--CCCEEEEEECCcccccCC----HHHHHHHHHHHcCCCeEEEEE
Confidence 431 222211 11 112444555556777743 3445554 5788999887764
No 39
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=60.08 E-value=1.7e+02 Score=28.34 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=26.7
Q ss_pred HHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCC
Q 008153 297 ILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGP 344 (576)
Q Consensus 297 ILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~ 344 (576)
+++.+.-....+|+|+|-|.|. +...++.+ +|+..++|+++.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~ 84 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDF 84 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeC
Confidence 4444443345789999999986 23333332 234689999985
No 40
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=58.46 E-value=1e+02 Score=33.25 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=63.2
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEe
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFR 374 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~ 374 (576)
..+++.+.....=+|+|||-|.|. +-..|+.+ -|..++|+|+. +...++...+++.+ .++..+|.
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~---~p~~~v~~vDi----s~~Al~~A~~nl~~----n~l~~~~~ 250 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARH---SPKIRLTLSDV----SAAALESSRATLAA----NGLEGEVF 250 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHh---CCCCEEEEEEC----CHHHHHHHHHHHHH----cCCCCEEE
Confidence 344555543223379999999997 44455554 24578999994 45666666555543 45555554
Q ss_pred eeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCC-CChHHHHHHH-HHhcCCcEEEEE
Q 008153 375 GFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLAR-PGGIEKVVSS-IKAMRPKIITIV 435 (576)
Q Consensus 375 ~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~-~~~~d~vL~~-Ir~L~PkIvtlv 435 (576)
. .+-++.+ .+.-+.++.|-.| |.-... ....+.+++. .+-|+|.-..++
T Consensus 251 ~--~D~~~~~--------~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 251 A--SNVFSDI--------KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred E--ccccccc--------CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 2 1111111 1122577878654 543321 1234566655 466899876654
No 41
>PRK05785 hypothetical protein; Provisional
Probab=57.50 E-value=1.5e+02 Score=29.82 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=49.7
Q ss_pred eeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCC
Q 008153 306 RVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLE 385 (576)
Q Consensus 306 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~ 385 (576)
.-.|+|+|.|.|.- ...|+.+.+ .++|||++ +.+.|+... .-. + + + ....+++
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~----S~~Ml~~a~--------~~~-~--~--~-~~d~~~l- 104 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDY----AENMLKMNL--------VAD-D--K--V-VGSFEAL- 104 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECC----CHHHHHHHH--------hcc-c--e--E-EechhhC-
Confidence 34799999999953 334554432 48999995 334444322 111 1 1 1 1223332
Q ss_pred ccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 386 PDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 386 ~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
... ++..=+|-+.+.||++.+ .+.+|+.+ |-|+|.++ ++|
T Consensus 105 ----p~~--d~sfD~v~~~~~l~~~~d----~~~~l~e~~RvLkp~~~-ile 145 (226)
T PRK05785 105 ----PFR--DKSFDVVMSSFALHASDN----IEKVIAEFTRVSRKQVG-FIA 145 (226)
T ss_pred ----CCC--CCCEEEEEecChhhccCC----HHHHHHHHHHHhcCceE-EEE
Confidence 222 224445555677888644 45566655 56788543 444
No 42
>PRK14968 putative methyltransferase; Provisional
Probab=55.11 E-value=1.7e+02 Score=27.23 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=28.3
Q ss_pred CeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHH
Q 008153 305 NRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKL 360 (576)
Q Consensus 305 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL 360 (576)
+.-.|+|+|.+.|. +...|+.+ + .++||++. +...++.+.+++
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~----s~~~~~~a~~~~ 65 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDI----NPYAVECAKCNA 65 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-c----ceEEEEEC----CHHHHHHHHHHH
Confidence 34469999999998 55556655 2 57999983 344555444444
No 43
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=52.95 E-value=84 Score=31.75 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=60.9
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce--eE
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE--FE 372 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp--Fe 372 (576)
..|++.+. .+.-+|+|+|-|.|. +...|+.+ + .++|||+. +...++...+++ +..|+. .+
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~----s~~~l~~a~~~~----~~~g~~~~v~ 96 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDL----SAEMIQRAKQAA----EAKGVSDNMQ 96 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEEC----CHHHHHHHHHHH----HhcCCccceE
Confidence 45777775 344699999999994 55566655 2 48999984 345555444443 334442 33
Q ss_pred EeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEE
Q 008153 373 FRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIV 435 (576)
Q Consensus 373 F~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlv 435 (576)
|.. ....++.+. .++ ..=+|-|...||++.+ +...+-...+-|+|.-.+++
T Consensus 97 ~~~---~d~~~l~~~----~~~--~fD~V~~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 97 FIH---CAAQDIAQH----LET--PVDLILFHAVLEWVAD---PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEE---cCHHHHhhh----cCC--CCCEEEehhHHHhhCC---HHHHHHHHHHHcCCCeEEEE
Confidence 332 223333211 011 2223334556787743 33333444578899988765
No 44
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=50.90 E-value=1.5e+02 Score=31.84 Aligned_cols=126 Identities=20% Similarity=0.297 Sum_probs=72.7
Q ss_pred ccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCc--eeEEeeeecC
Q 008153 302 NNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGV--EFEFRGFVCN 379 (576)
Q Consensus 302 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgV--pFeF~~v~~~ 379 (576)
+..+.|||+|.--|+|. -++.+|..-|..|-+++|--..+ .-=+-|+.|. +..|+ -++|..--
T Consensus 132 ~~g~pvrIlDIAaG~GR---YvlDal~~~~~~~~~i~LrDys~-------~Nv~~g~~li---~~~gL~~i~~f~~~d-- 196 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGR---YVLDALEKHPERPDSILLRDYSP-------INVEKGRALI---AERGLEDIARFEQGD-- 196 (311)
T ss_pred hcCCceEEEEeccCCcH---HHHHHHHhCCCCCceEEEEeCCH-------HHHHHHHHHH---HHcCCccceEEEecC--
Confidence 34689999999999996 49999998888776776664442 2224566554 44444 23454321
Q ss_pred CCCCCCcccc-ccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHh-cCCcEEEEEecCCCCCCchhHHH
Q 008153 380 SLADLEPDML-DIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKA-MRPKIITIVEQEANHNSPVFLDR 449 (576)
Q Consensus 380 ~ledl~~~~L-~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~-L~PkIvtlvEqeanhNsp~F~~R 449 (576)
.++...+ .+.|. -.|+|-| .|+-|..+...+..-|..+.. +.|.-..+.-.---|-.-.|+.|
T Consensus 197 ---Afd~~~l~~l~p~--P~l~iVs--GL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr 261 (311)
T PF12147_consen 197 ---AFDRDSLAALDPA--PTLAIVS--GLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIAR 261 (311)
T ss_pred ---CCCHhHhhccCCC--CCEEEEe--cchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHH
Confidence 2223222 12222 2455544 367777665556666666644 78887777533334444333333
No 45
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=50.12 E-value=1.5e+02 Score=28.60 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCC
Q 008153 296 AILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGP 344 (576)
Q Consensus 296 AILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~ 344 (576)
.|.+.+... -+|+|+|-|.|. ++..|+.+.+ .+++||+.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~ 44 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEI 44 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeC
Confidence 455555433 379999999995 5666765532 35689984
No 46
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=49.13 E-value=28 Score=26.14 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=24.8
Q ss_pred ceEEEEehh-hhhhccCCCChHHHHHHHHHhcCCcEEEEEe
Q 008153 397 ETVAVNSVF-ELHRLLARPGGIEKVVSSIKAMRPKIITIVE 436 (576)
Q Consensus 397 EaLaVN~~~-~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvE 436 (576)
|.+-|||.. .++ +.+ ....+.++.+|+.++|+-+++|-
T Consensus 1 e~i~v~a~v~~~~-fSg-Had~~~L~~~i~~~~p~~vilVH 39 (43)
T PF07521_consen 1 EMIPVRARVEQID-FSG-HADREELLEFIEQLNPRKVILVH 39 (43)
T ss_dssp CEEE--SEEEESG-CSS-S-BHHHHHHHHHHHCSSEEEEES
T ss_pred CEEEeEEEEEEEe-ecC-CCCHHHHHHHHHhcCCCEEEEec
Confidence 345566542 333 333 35689999999999999999973
No 47
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=48.84 E-value=1.7e+02 Score=30.82 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=57.9
Q ss_pred eEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-eEEeeeecCCCCCCC
Q 008153 307 VHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-FEFRGFVCNSLADLE 385 (576)
Q Consensus 307 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-FeF~~v~~~~ledl~ 385 (576)
-+|+|++-|.|. +--.||.+ + -+++||+. +...++.+.++ |+..|++ .+|.. ...+++.
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~----s~~av~~A~~n----~~~~~l~~v~~~~---~D~~~~~ 234 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP-G----MQLTGIEI----SAEAIACAKQS----AAELGLTNVQFQA---LDSTQFA 234 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc-C----CEEEEEeC----CHHHHHHHHHH----HHHcCCCceEEEE---cCHHHHH
Confidence 579999999986 34445553 2 37999983 45556554433 3445553 45543 2222221
Q ss_pred ccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEe
Q 008153 386 PDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVE 436 (576)
Q Consensus 386 ~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvE 436 (576)
.. . .+.-..+++|= .+.+.-+.++..+.+++|+-++.+.
T Consensus 235 ~~---~-~~~~D~Vv~dP--------Pr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 235 TA---Q-GEVPDLVLVNP--------PRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred Hh---c-CCCCeEEEECC--------CCCCccHHHHHHHHHcCCCeEEEEE
Confidence 11 1 01125777772 2335456788899999999888874
No 48
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=44.05 E-value=1.3e+02 Score=30.58 Aligned_cols=86 Identities=17% Similarity=0.339 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCC
Q 008153 270 SYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDN 349 (576)
Q Consensus 270 s~~~~l~~~fye~~P~~kfahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~ 349 (576)
...++.+.||++....+.-. .+. ..||||.|-|-|+ |.+.=|++. |.+++|-|++-. +.
T Consensus 45 ~~~e~~~rHilDSl~~~~~~------------~~~-~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~-Kk 103 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYL------------DGK-AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLG-KK 103 (215)
T ss_pred CHHHHHHHHHHHHhhhhhcc------------ccc-CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCc-hH
Confidence 44577777887654322211 111 5799999987776 888888763 678899998532 11
Q ss_pred hHHHHHHHHHHHHHHhHcCce-eEEeeeecCCCCCCCc
Q 008153 350 TDALQQVGWKLAQLADTIGVE-FEFRGFVCNSLADLEP 386 (576)
Q Consensus 350 ~~~L~etG~rL~~fA~slgVp-FeF~~v~~~~ledl~~ 386 (576)
.. -|.+.++.+|++ .++.. .+.|++..
T Consensus 104 ~~-------FL~~~~~eL~L~nv~i~~---~RaE~~~~ 131 (215)
T COG0357 104 IA-------FLREVKKELGLENVEIVH---GRAEEFGQ 131 (215)
T ss_pred HH-------HHHHHHHHhCCCCeEEeh---hhHhhccc
Confidence 22 455667777887 77653 45666654
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=42.92 E-value=3.4e+02 Score=26.66 Aligned_cols=97 Identities=14% Similarity=0.265 Sum_probs=53.8
Q ss_pred eeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-eEEeeeecCCCCCC
Q 008153 306 RVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-FEFRGFVCNSLADL 384 (576)
Q Consensus 306 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-FeF~~v~~~~ledl 384 (576)
.-.|+|+|-|.|. .+++ ++.+ .|..++|+|+. +.+.++.+.+ .++..+++ ++|.. .+.+++
T Consensus 46 g~~VLDiGcGtG~--~al~--la~~---~~~~~V~giD~----s~~~l~~A~~----~~~~~~l~~i~~~~---~d~~~~ 107 (187)
T PRK00107 46 GERVLDVGSGAGF--PGIP--LAIA---RPELKVTLVDS----LGKKIAFLRE----VAAELGLKNVTVVH---GRAEEF 107 (187)
T ss_pred CCeEEEEcCCCCH--HHHH--HHHH---CCCCeEEEEeC----cHHHHHHHHH----HHHHcCCCCEEEEe---ccHhhC
Confidence 3469999999884 2332 2222 13468999984 3344444333 34445653 55543 233333
Q ss_pred CccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 385 EPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 385 ~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
.. . . .-..++.|+. ..++.+++.+ +.|+|.-.+++.
T Consensus 108 ~~---~-~--~fDlV~~~~~----------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 108 GQ---E-E--KFDVVTSRAV----------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CC---C-C--CccEEEEccc----------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 22 1 1 1246666642 2356677764 789999888765
No 50
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=42.40 E-value=2.4e+02 Score=30.12 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=56.5
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEe
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFR 374 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~ 374 (576)
.+|++.+...+.=+|+|+|.|.|. ++..++.+ |+ -+++||++. ...+.+. +...+++... -...|.
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS----~~ml~q~-~~~~~~~~~~-~~v~~~ 176 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPT----VLFLCQF-EAVRKLLDND-KRAILE 176 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCC----HHHHHHH-HHHHHHhccC-CCeEEE
Confidence 345555543333489999999997 44455543 33 268999953 2233221 1122222111 122232
Q ss_pred eeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEe
Q 008153 375 GFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVE 436 (576)
Q Consensus 375 ~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvE 436 (576)
. ..++++... . .- .+++ |+..|||+. ++.+.+-..-+.|+|.-.+++|
T Consensus 177 ~---~~ie~lp~~--~-~F---D~V~--s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 177 P---LGIEQLHEL--Y-AF---DTVF--SMGVLYHRK---SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred E---CCHHHCCCC--C-Cc---CEEE--EcchhhccC---CHHHHHHHHHHhcCCCCEEEEE
Confidence 2 234444321 0 11 2433 444567763 4455555555779998766654
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=41.50 E-value=2.6e+02 Score=30.61 Aligned_cols=114 Identities=13% Similarity=0.168 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcC
Q 008153 289 AHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIG 368 (576)
Q Consensus 289 ahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slg 368 (576)
|....-..|++.+.-...=+|+|+|.|.|. +...++.+.+ .++|||+. +...++...++. + +
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDl----S~~~l~~A~~~~----~--~ 212 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTI----SAEQQKLAQERC----A--G 212 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeC----CHHHHHHHHHHh----c--c
Confidence 334444556666653444589999988775 4555665543 48999984 344454444433 2 2
Q ss_pred ceeEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEE
Q 008153 369 VEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIV 435 (576)
Q Consensus 369 VpFeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlv 435 (576)
+..+|.. ....++. +.-..++.+ ..++|+.. ...+.+++.+ +-|+|.-.+++
T Consensus 213 l~v~~~~---~D~~~l~--------~~fD~Ivs~--~~~ehvg~--~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 213 LPVEIRL---QDYRDLN--------GQFDRIVSV--GMFEHVGP--KNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred CeEEEEE---CchhhcC--------CCCCEEEEe--CchhhCCh--HHHHHHHHHHHHHcCCCcEEEE
Confidence 3334432 1222221 111233333 33566522 2345566655 67799877665
No 52
>PLN02244 tocopherol O-methyltransferase
Probab=41.01 E-value=3.7e+02 Score=28.65 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=54.7
Q ss_pred CeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCc--eeEEeeeecCCCC
Q 008153 305 NRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGV--EFEFRGFVCNSLA 382 (576)
Q Consensus 305 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgV--pFeF~~v~~~~le 382 (576)
+.-+|+|+|-|.|. +...|+.+.+ .++|||+. +...++.. .+.++..|+ ..+|.. ....
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~----s~~~i~~a----~~~~~~~g~~~~v~~~~---~D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITL----SPVQAARA----NALAAAQGLSDKVSFQV---ADAL 178 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEEC----CHHHHHHH----HHHHHhcCCCCceEEEE---cCcc
Confidence 34579999999886 5556666543 48999984 23333322 223444454 345542 1222
Q ss_pred CCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHH-HHHhcCCcEEEE
Q 008153 383 DLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVS-SIKAMRPKIITI 434 (576)
Q Consensus 383 dl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~-~Ir~L~PkIvtl 434 (576)
++. .. ++..=+|-|...+||+.+ ...+|+ ..|-|+|.-.++
T Consensus 179 ~~~-----~~--~~~FD~V~s~~~~~h~~d----~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 179 NQP-----FE--DGQFDLVWSMESGEHMPD----KRKFVQELARVAAPGGRII 220 (340)
T ss_pred cCC-----CC--CCCccEEEECCchhccCC----HHHHHHHHHHHcCCCcEEE
Confidence 221 11 123334555667888754 345555 457789975444
No 53
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=41.00 E-value=3.6e+02 Score=26.46 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=51.8
Q ss_pred cCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCC
Q 008153 303 NANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLA 382 (576)
Q Consensus 303 g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~le 382 (576)
.....+|+|+|.+.|.- ...|+.+ + .++|+|+.. ...++...+++. ..++..+|... .+.
T Consensus 46 ~~~~~~vLdiG~G~G~~----~~~l~~~-~----~~v~~iD~s----~~~~~~a~~~~~----~~~~~~~~~~~---~~~ 105 (233)
T PRK05134 46 GLFGKRVLDVGCGGGIL----SESMARL-G----ADVTGIDAS----EENIEVARLHAL----ESGLKIDYRQT---TAE 105 (233)
T ss_pred CCCCCeEEEeCCCCCHH----HHHHHHc-C----CeEEEEcCC----HHHHHHHHHHHH----HcCCceEEEec---CHH
Confidence 34466899999998863 3344443 2 469999853 344444443332 23444455432 222
Q ss_pred CCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 383 DLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 383 dl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
++.. ...+ -.=+|-+..-++++.+ ...+|+.+ +-|+|.-.+++.
T Consensus 106 ~~~~----~~~~--~fD~Ii~~~~l~~~~~----~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 106 ELAA----EHPG--QFDVVTCMEMLEHVPD----PASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred Hhhh----hcCC--CccEEEEhhHhhccCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 2211 0111 1222333344665532 34455544 667888665553
No 54
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=40.90 E-value=1.9e+02 Score=31.40 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=57.1
Q ss_pred EEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCc-eeEEeeeecCCCCCCCc
Q 008153 308 HVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGV-EFEFRGFVCNSLADLEP 386 (576)
Q Consensus 308 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgV-pFeF~~v~~~~ledl~~ 386 (576)
+|+|++-|.|. +--.||.+ + -+++||+ .+...++.+.+++ +..|+ ..+|.. ...+++..
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE----~~~~av~~a~~N~----~~~~~~~~~~~~---~d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIE----IESEAIACAQQSA----QMLGLDNLSFAA---LDSAKFAT 295 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEE----CCHHHHHHHHHHH----HHcCCCcEEEEE---CCHHHHHH
Confidence 68999998884 33444532 2 3799998 4456665554443 33454 344432 22222211
Q ss_pred cccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEe
Q 008153 387 DMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVE 436 (576)
Q Consensus 387 ~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvE 436 (576)
. +. . .-+++++|=. +.+....++..|..++|+-++.|+
T Consensus 296 ~-~~-~--~~D~vi~DPP--------r~G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 296 A-QM-S--APELVLVNPP--------RRGIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred h-cC-C--CCCEEEECCC--------CCCCcHHHHHHHHhcCCCeEEEEE
Confidence 1 10 1 1257888833 345567889999999998888876
No 55
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=39.38 E-value=3.4e+02 Score=25.68 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred EEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEe
Q 008153 308 HVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFR 374 (576)
Q Consensus 308 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~ 374 (576)
.|+|+|.|.|. +...++.+ ++ ++++|+. +.+.++.+.+++. ..++..+|.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~----s~~~~~~a~~~~~----~~~~~~~~~ 71 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDI----NPFAVKELRENAK----LNNVGLDVV 71 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEEC----CHHHHHHHHHHHH----HcCCceEEE
Confidence 49999999995 55556654 33 8999983 4556665555553 334444443
No 56
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=38.39 E-value=1.7e+02 Score=30.41 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=70.0
Q ss_pred HHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeee
Q 008153 298 LEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFV 377 (576)
Q Consensus 298 LEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~ 377 (576)
|.-+.-+.---|+|+|.|-|.+= +-|++|- |-=.||||+ .+.+.|++...|| ...+|..
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiD----sS~~Mla~Aa~rl--------p~~~f~~-- 81 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGID----SSPAMLAKAAQRL--------PDATFEE-- 81 (257)
T ss_pred HhhCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeecc----CCHHHHHHHHHhC--------CCCceec--
Confidence 33445566678999999999854 3455553 346799999 3456666544443 4444432
Q ss_pred cCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEecCCCCCCc
Q 008153 378 CNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSP 444 (576)
Q Consensus 378 ~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvEqeanhNsp 444 (576)
..+.+.+++. +-..+.-|.+| |-|.+. .+-|-+.+-.|.|.-+.-|---.|+..|
T Consensus 82 -aDl~~w~p~~------~~dllfaNAvl--qWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 82 -ADLRTWKPEQ------PTDLLFANAVL--QWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred -ccHhhcCCCC------ccchhhhhhhh--hhcccc---HHHHHHHHHhhCCCceEEEECCCccCch
Confidence 1222222211 12466677774 455443 4567778889999999988777776555
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=38.32 E-value=12 Score=31.63 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=18.1
Q ss_pred EecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCC
Q 008153 310 IDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPP 345 (576)
Q Consensus 310 IDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p 345 (576)
+|+|-|.|.==..|++.+ |..++||+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s 29 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDIS 29 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESS
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECC
Confidence 477777776444444444 78999999954
No 58
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=37.11 E-value=3.6e+02 Score=28.98 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-eEEe
Q 008153 296 AILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-FEFR 374 (576)
Q Consensus 296 AILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-FeF~ 374 (576)
.|..++. ....|||||-|.|..=..|+++|..+ +. ..+-.+|+ -+.+.|++...+|. .-..| .+++
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plD----IS~~~L~~a~~~L~----~~~~p~l~v~ 135 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALD----VSRSELQRTLAELP----LGNFSHVRCA 135 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEE----CCHHHHHHHHHhhh----hccCCCeEEE
Confidence 3444453 23479999999999999999999732 22 36778888 35788998888886 11233 6677
Q ss_pred eeecCCCCCCC--ccccccCCCCCceEEEEe-hhhhhhccCCCChHHHHHHHHHh--cCCcEEEEEecCCC---------
Q 008153 375 GFVCNSLADLE--PDMLDIRPPEVETVAVNS-VFELHRLLARPGGIEKVVSSIKA--MRPKIITIVEQEAN--------- 440 (576)
Q Consensus 375 ~v~~~~ledl~--~~~L~lr~~~~EaLaVN~-~~~Lh~L~~~~~~~d~vL~~Ir~--L~PkIvtlvEqean--------- 440 (576)
++...--+.+. +.. ... ....+|-+ --.+.++ .+.....||+.+++ |+|.=..++=-|..
T Consensus 136 ~l~gdy~~~l~~l~~~-~~~---~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~A 209 (319)
T TIGR03439 136 GLLGTYDDGLAWLKRP-ENR---SRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRA 209 (319)
T ss_pred EEEecHHHHHhhcccc-ccc---CCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHH
Confidence 76542111111 000 011 12222222 1223332 23456789999987 88976666534432
Q ss_pred CCCc--hhHHHHHHHHHHHHHHhhh
Q 008153 441 HNSP--VFLDRFTEALHYYSSLFDS 463 (576)
Q Consensus 441 hNsp--~F~~RF~EAL~yYsalFDS 463 (576)
+|.+ .......+.|++--..++.
T Consensus 210 Y~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 210 YNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred hcCCcchhHHHHHHHHHHHHHHhCc
Confidence 2322 2233345666666666653
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=36.68 E-value=1e+02 Score=26.43 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=30.6
Q ss_pred HHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHH
Q 008153 297 ILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKL 360 (576)
Q Consensus 297 ILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL 360 (576)
+++.+.-.+.=+|+|+|.|.|. +...|+.+. |..++|+|+. +...++.+.+++
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~----~~~~l~~~~---~~~~v~~vD~----s~~~~~~a~~~~ 63 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGS----ITIEAARLV---PNGRVYAIER----NPEALRLIERNA 63 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH----HHHHHHHHC---CCceEEEEcC----CHHHHHHHHHHH
Confidence 3344432222389999999886 344445442 2378999994 334454444443
No 60
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=36.40 E-value=4.3e+02 Score=26.31 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=30.0
Q ss_pred HHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCC
Q 008153 292 TANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGP 344 (576)
Q Consensus 292 tANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~ 344 (576)
..-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ + -++|+++.
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~ 72 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDL 72 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEEC
Confidence 344556677765445579999999994 55666653 2 47999984
No 61
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=36.35 E-value=3.2e+02 Score=27.16 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=58.8
Q ss_pred eEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-eEEeeeecCCCCCCC
Q 008153 307 VHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-FEFRGFVCNSLADLE 385 (576)
Q Consensus 307 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-FeF~~v~~~~ledl~ 385 (576)
-.|+|++-|.|. --+.+|+.. . -++|+|+. +.+.++.+.+.+. ..|+. .+|.. ..+.+.-
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~---a--~~V~~vE~----~~~a~~~a~~Nl~----~~~~~~v~~~~---~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRY---A--AGATLLEM----DRAVAQQLIKNLA----TLKAGNARVVN---TNALSFL 115 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcC---C--CEEEEEEC----CHHHHHHHHHHHH----HhCCCcEEEEE---chHHHHH
Confidence 368999998883 223455532 1 37999983 3444544444433 33432 33321 1111110
Q ss_pred ccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 008153 386 PDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKA---MRPKIITIVEQEANHN 442 (576)
Q Consensus 386 ~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~---L~PkIvtlvEqeanhN 442 (576)
+. .. . .-..+++|=.|. .+..+.++..|.. ++|+-+++||.....+
T Consensus 116 ~~-~~-~--~fDlV~~DPPy~-------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 116 AQ-PG-T--PHNVVFVDPPFR-------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred hh-cC-C--CceEEEECCCCC-------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 00 00 1 125777775541 3556788888887 6999999999776543
No 62
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=33.96 E-value=50 Score=34.61 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=20.6
Q ss_pred ccCCeeEEEecccCCCcchHHHHHHHhc
Q 008153 302 NNANRVHVIDFSLKQGMQWPALMQALAL 329 (576)
Q Consensus 302 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~ 329 (576)
.|.+.+||||++-+.+.+ -.+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999998766666 445666665
No 63
>PRK06922 hypothetical protein; Provisional
Probab=33.82 E-value=2.4e+02 Score=33.55 Aligned_cols=106 Identities=15% Similarity=0.203 Sum_probs=57.0
Q ss_pred eEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCCc
Q 008153 307 VHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEP 386 (576)
Q Consensus 307 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~~ 386 (576)
-.|+|+|.|.|. +...|+.+. |..++|||+.. ...++.+..++. ..+.+++|.. .+..++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS----~~MLe~Ararl~----~~g~~ie~I~---gDa~dLp- 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS----ENVIDTLKKKKQ----NEGRSWNVIK---GDAINLS- 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC----HHHHHHHHHHhh----hcCCCeEEEE---cchHhCc-
Confidence 479999999984 445666542 45899999953 455655544432 2344544431 1222221
Q ss_pred cccccCCCCCceEEEEehhhhhhccCC---------CChHHHHHHHH-HhcCCcEEEEE
Q 008153 387 DMLDIRPPEVETVAVNSVFELHRLLAR---------PGGIEKVVSSI-KAMRPKIITIV 435 (576)
Q Consensus 387 ~~L~lr~~~~EaLaVN~~~~Lh~L~~~---------~~~~d~vL~~I-r~L~PkIvtlv 435 (576)
.. +.++ .+=+|-+.+.+|++..- ......+|+.+ +.|+|.-.+++
T Consensus 481 ~~--fede--SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 481 SS--FEKE--SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred cc--cCCC--CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 00 2222 33334445567876420 12345666554 78999855554
No 64
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=33.68 E-value=3.7e+02 Score=28.57 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=54.3
Q ss_pred HHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeee
Q 008153 297 ILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGF 376 (576)
Q Consensus 297 ILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v 376 (576)
|++.+..-+--+|+|+|.|.|. ++..++.+ |+- +++||++. ...+.+. +...+++.. ..+.+|...
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g~~--~V~GiD~S----~~~l~q~-~a~~~~~~~-~~~i~~~~~ 179 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--GAK--LVVGIDPS----QLFLCQF-EAVRKLLGN-DQRAHLLPL 179 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCC----HHHHHHH-HHHHHhcCC-CCCeEEEeC
Confidence 3444432222379999999985 33445544 332 49999943 2222111 111122211 223344432
Q ss_pred ecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEe
Q 008153 377 VCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVE 436 (576)
Q Consensus 377 ~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvE 436 (576)
.++++.. ++.=++++ |+..|||+. ++.+.+-..-+.|+|.-.++.|
T Consensus 180 ---d~e~lp~------~~~FD~V~--s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 180 ---GIEQLPA------LKAFDTVF--SMGVLYHRR---SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ---CHHHCCC------cCCcCEEE--ECChhhccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 3333321 11112333 444577753 3445555556788998777765
No 65
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=32.01 E-value=1.5e+02 Score=30.93 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=63.9
Q ss_pred CeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCC
Q 008153 305 NRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADL 384 (576)
Q Consensus 305 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl 384 (576)
...-|.|+|-|-| .|-+.||+. | .++|||+.. ...++.. ...|..-||..+|.... .|++
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~s----e~~I~~A----k~ha~e~gv~i~y~~~~---~edl 118 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDAS----EKPIEVA----KLHALESGVNIDYRQAT---VEDL 118 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCC----hHHHHHH----HHhhhhccccccchhhh---HHHH
Confidence 4567899999988 577788854 3 899999942 2333322 23456678888888643 3444
Q ss_pred CccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHH-HHhcCCcEEEEE
Q 008153 385 EPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSS-IKAMRPKIITIV 435 (576)
Q Consensus 385 ~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~-Ir~L~PkIvtlv 435 (576)
.... +-.=||-|+=-|+|+.+ + +.|++. .+-++|.-+++.
T Consensus 119 ~~~~-------~~FDvV~cmEVlEHv~d---p-~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 119 ASAG-------GQFDVVTCMEVLEHVPD---P-ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HhcC-------CCccEEEEhhHHHccCC---H-HHHHHHHHHHcCCCcEEEE
Confidence 4321 13447778878899854 3 345554 466799877665
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=30.62 E-value=5e+02 Score=25.08 Aligned_cols=96 Identities=15% Similarity=0.286 Sum_probs=50.7
Q ss_pred eEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-eEEeeeecCCCCCCC
Q 008153 307 VHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-FEFRGFVCNSLADLE 385 (576)
Q Consensus 307 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-FeF~~v~~~~ledl~ 385 (576)
-+|+|+|-|.|. .++. ||.+ .|..++|||+.. ...++.+. +.++..|++ ++|.. .+++++.
T Consensus 44 ~~vLDiGcGtG~--~s~~--la~~---~~~~~V~~iD~s----~~~~~~a~----~~~~~~~~~~i~~i~---~d~~~~~ 105 (181)
T TIGR00138 44 KKVIDIGSGAGF--PGIP--LAIA---RPELKLTLLESN----HKKVAFLR----EVKAELGLNNVEIVN---GRAEDFQ 105 (181)
T ss_pred CeEEEecCCCCc--cHHH--HHHH---CCCCeEEEEeCc----HHHHHHHH----HHHHHhCCCCeEEEe---cchhhcc
Confidence 489999999984 2221 2221 134689999842 33343332 334455653 45442 3344432
Q ss_pred ccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 386 PDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 386 ~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
. .+.-..++.|+ +|. .+.++..+ +-|+|.-+++++
T Consensus 106 ~------~~~fD~I~s~~---~~~-------~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 106 H------EEQFDVITSRA---LAS-------LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred c------cCCccEEEehh---hhC-------HHHHHHHHHHhcCCCCEEEEE
Confidence 1 11114666554 333 33455554 458999888875
No 67
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=30.57 E-value=2.4e+02 Score=29.44 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=60.7
Q ss_pred HHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEE
Q 008153 294 NQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEF 373 (576)
Q Consensus 294 NqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF 373 (576)
..-|+|.+.=+.-=||+|+|.| |=.++..+|+|.| .++|||.. +....+.+ .+.++..|++-.-
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitl----S~~Q~~~a----~~~~~~~gl~~~v 114 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITL----SEEQAEYA----RERIREAGLEDRV 114 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-----HHHHHHH----HHHHHCSTSSSTE
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEEC----CHHHHHHH----HHHHHhcCCCCce
Confidence 3456666654555599999876 6678999998864 68999983 23333333 3344566765222
Q ss_pred eeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 374 RGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 374 ~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
.. ......++.. .-+ -++.|- .+.|+- ....+.+++.| +-|+|.-..++.
T Consensus 115 ~v-~~~D~~~~~~-----~fD--~IvSi~---~~Ehvg--~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 115 EV-RLQDYRDLPG-----KFD--RIVSIE---MFEHVG--RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EE-EES-GGG--------S-S--EEEEES---EGGGTC--GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EE-EEeeccccCC-----CCC--EEEEEe---chhhcC--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 1223333332 222 233332 344542 13467888888 667999887763
No 68
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=30.05 E-value=21 Score=24.59 Aligned_cols=10 Identities=60% Similarity=0.810 Sum_probs=8.4
Q ss_pred ccccCCCchh
Q 008153 87 TVHYNPSDVS 96 (576)
Q Consensus 87 tvhynpsdls 96 (576)
.||-||||-|
T Consensus 7 i~h~~psdks 16 (28)
T PRK14751 7 VMHKNPSDKS 16 (28)
T ss_pred eeecCCCcCc
Confidence 4899999976
No 69
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=30.05 E-value=1.6e+02 Score=31.27 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHc
Q 008153 288 FAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTI 367 (576)
Q Consensus 288 fahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~sl 367 (576)
=|.+..=..|++-+.=+.--||.|||.| |=+|+.-.|++-| .++|||... ...+....+| ++..
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS----~~Q~~~~~~r----~~~~ 118 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLS----EEQLAYAEKR----IAAR 118 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCC----HHHHHHHHHH----HHHc
Confidence 3555566667777766778899999765 8889999998875 689999842 3344433333 3445
Q ss_pred Cce--eEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHh-cCCcEEEE
Q 008153 368 GVE--FEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKA-MRPKIITI 434 (576)
Q Consensus 368 gVp--FeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~-L~PkIvtl 434 (576)
|++ .++. ...+.++... + =.|-++-.++|+-. ...+.+++.+++ |+|+-..+
T Consensus 119 gl~~~v~v~---l~d~rd~~e~-f---------DrIvSvgmfEhvg~--~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 119 GLEDNVEVR---LQDYRDFEEP-F---------DRIVSVGMFEHVGK--ENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred CCCcccEEE---eccccccccc-c---------ceeeehhhHHHhCc--ccHHHHHHHHHhhcCCCceEE
Confidence 554 2222 2244554433 1 12334445566632 246788888855 57765544
No 70
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=29.65 E-value=65 Score=33.80 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=36.2
Q ss_pred CCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEee
Q 008153 333 GPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRG 375 (576)
Q Consensus 333 GPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~ 375 (576)
|+|.-|||..++.-......|+++...+.+-++..|+.++|..
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r 261 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIR 261 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 7899999988865333457899999999999999999999974
No 71
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=29.52 E-value=3.9e+02 Score=25.96 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=27.2
Q ss_pred CCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHH
Q 008153 304 ANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKL 360 (576)
Q Consensus 304 ~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL 360 (576)
...-.|+|+|.|.|. +...|+.+ + .++|||+. +...++...+++
T Consensus 62 ~~~~~vLDvGcG~G~----~~~~l~~~--~---~~v~~~D~----s~~~i~~a~~~~ 105 (230)
T PRK07580 62 LTGLRILDAGCGVGS----LSIPLARR--G---AKVVASDI----SPQMVEEARERA 105 (230)
T ss_pred CCCCEEEEEeCCCCH----HHHHHHHc--C---CEEEEEEC----CHHHHHHHHHHH
Confidence 345689999999886 33445543 2 34999984 344555554443
No 72
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=28.15 E-value=6e+02 Score=26.41 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=66.2
Q ss_pred hccCCeeEEEecccCCCcchHHHHHHHhcCCCCC--CeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeec
Q 008153 301 FNNANRVHVIDFSLKQGMQWPALMQALALRPGGP--PAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVC 378 (576)
Q Consensus 301 ~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGP--P~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~ 378 (576)
+....++-|...|+|-|.-.+- -| |--|||.|+|. ..++++..+ .+|+.....|+.. +.
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkf----------y~~~p~~svt~lDpn-----~~mee~~~k--s~~E~k~~~~~~f--vv 132 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKF----------YPWKPINSVTCLDPN-----EKMEEIADK--SAAEKKPLQVERF--VV 132 (252)
T ss_pred hcccCccceEEecccCCCCccc----------ccCCCCceEEEeCCc-----HHHHHHHHH--HHhhccCcceEEE--Ee
Confidence 3446689999999998753321 13 67899999963 456666554 4455544455522 22
Q ss_pred CCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHh-cCCcEEEE-EecCCCCCCchhHHHHHH
Q 008153 379 NSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKA-MRPKIITI-VEQEANHNSPVFLDRFTE 452 (576)
Q Consensus 379 ~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~-L~PkIvtl-vEqeanhNsp~F~~RF~E 452 (576)
...|++. ++..+ -.=+|-|.|-|=.. .+ ..+.|+.+|+ |+|.-.++ .|+-+.-. .|..|+.+
T Consensus 133 a~ge~l~----~l~d~--s~DtVV~TlvLCSv---e~-~~k~L~e~~rlLRpgG~iifiEHva~~y--~~~n~i~q 196 (252)
T KOG4300|consen 133 ADGENLP----QLADG--SYDTVVCTLVLCSV---ED-PVKQLNEVRRLLRPGGRIIFIEHVAGEY--GFWNRILQ 196 (252)
T ss_pred echhcCc----ccccC--CeeeEEEEEEEecc---CC-HHHHHHHHHHhcCCCcEEEEEecccccc--hHHHHHHH
Confidence 3344443 12222 22222233333211 23 3456676654 69986655 78776643 56777665
No 73
>PF08499 PDEase_I_N: 3'5'-cyclic nucleotide phosphodiesterase N-terminal; InterPro: IPR013706 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This domain is found to the N terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (IPR002073 from INTERPRO).; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity
Probab=28.03 E-value=25 Score=28.80 Aligned_cols=27 Identities=33% Similarity=0.749 Sum_probs=23.2
Q ss_pred cccccccccccccccCCCchhhHHHHhhhc
Q 008153 76 QEDGISHLATDTVHYNPSDVSGWVQSMLEG 105 (576)
Q Consensus 76 ~~d~~s~lasdtvhynpsdls~w~~sml~e 105 (576)
.||-+|.+-+|+| |++...||.||++-
T Consensus 5 ~edel~~i~~dsv---p~eVr~WLasTFtr 31 (59)
T PF08499_consen 5 EEDELSEIQSDSV---PDEVRDWLASTFTR 31 (59)
T ss_pred hhhhHhhcccccC---CHHHHHHHHHHHHh
Confidence 4566899999998 88899999999984
No 74
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=27.56 E-value=1.3e+02 Score=28.36 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=34.1
Q ss_pred HHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHH
Q 008153 295 QAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKL 360 (576)
Q Consensus 295 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL 360 (576)
+.|++.+.-...=+|+|+|-|.|. |...|+.| + -++|+|+. +.+.++.+.+++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~----~~~~~~~~~~~~ 55 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEI----DPRLAPRLREKF 55 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEEC----CHHHHHHHHHHh
Confidence 356666653444489999999887 66666666 2 37999984 344455444443
No 75
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=27.56 E-value=25 Score=24.45 Aligned_cols=10 Identities=50% Similarity=0.504 Sum_probs=8.4
Q ss_pred ccccCCCchh
Q 008153 87 TVHYNPSDVS 96 (576)
Q Consensus 87 tvhynpsdls 96 (576)
.+|.||||-|
T Consensus 7 ~m~~fP~D~S 16 (28)
T PF08076_consen 7 FMHHFPSDKS 16 (28)
T ss_pred eeccCCCccc
Confidence 3799999987
No 76
>PRK03646 dadX alanine racemase; Reviewed
Probab=26.97 E-value=1.2e+02 Score=32.68 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=26.6
Q ss_pred CeeEE-EecccC-CCcc---hHHHHHHHhcCCCCCCeeeEeecCCC
Q 008153 305 NRVHV-IDFSLK-QGMQ---WPALMQALALRPGGPPAFRLTGIGPP 345 (576)
Q Consensus 305 ~~VHI-IDf~I~-~G~Q---WpsLiqaLA~RpgGPP~LRITgI~~p 345 (576)
-+||| ||-|++ .|+. ++.+++.+.. .|.|+|+||...
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH 158 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSH 158 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcC
Confidence 37899 999996 7775 5566666543 356999999644
No 77
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=26.82 E-value=65 Score=33.58 Aligned_cols=25 Identities=12% Similarity=0.055 Sum_probs=17.0
Q ss_pred ccCCeeEEEecccCCCcchHHHHHHHhcC
Q 008153 302 NNANRVHVIDFSLKQGMQWPALMQALALR 330 (576)
Q Consensus 302 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~R 330 (576)
.|.+.+||||+ +.+ +. .+|..++..
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~ 74 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHA 74 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHh
Confidence 58999999999 444 55 455555443
No 78
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=26.36 E-value=35 Score=28.51 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=16.6
Q ss_pred chhhHHHHHhcCCCccccCC
Q 008153 504 TLTQWRTRLGSAGFEPVHLG 523 (576)
Q Consensus 504 ~~~qWr~Rm~~AGF~pv~ls 523 (576)
+..+-|.+|+.+|++||.+-
T Consensus 4 RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 4 RVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHcCCCcceee
Confidence 45567899999999999874
No 79
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=26.35 E-value=36 Score=37.25 Aligned_cols=13 Identities=46% Similarity=0.951 Sum_probs=11.2
Q ss_pred cCCeeEEEecccC
Q 008153 303 NANRVHVIDFSLK 315 (576)
Q Consensus 303 g~~~VHIIDf~I~ 315 (576)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 5779999999985
No 80
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=25.95 E-value=3.8e+02 Score=26.06 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=50.8
Q ss_pred EEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCCCCcc
Q 008153 308 HVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPD 387 (576)
Q Consensus 308 HIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~ledl~~~ 387 (576)
+|+|+|-+.|. +...++.+- |..++|||+. +...++....++ +..|+......+.. ...+..
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~----s~~~~~~a~~~~----~~~gl~~~i~~~~~-d~~~~~-- 63 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTI----SPEQAEVGRERI----RALGLQGRIRIFYR-DSAKDP-- 63 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEEC----CHHHHHHHHHHH----HhcCCCcceEEEec-ccccCC--
Confidence 68999998885 344555543 3368999985 334444444443 23344322221111 111111
Q ss_pred ccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEE
Q 008153 388 MLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIV 435 (576)
Q Consensus 388 ~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlv 435 (576)
+ ++.-..+ -+...+|++.+ .+.+|+.+ +-|+|.-.+++
T Consensus 64 -~---~~~fD~I--~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 64 -F---PDTYDLV--FGFEVIHHIKD----KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred -C---CCCCCEe--ehHHHHHhCCC----HHHHHHHHHHHcCCCCEEEE
Confidence 1 1111233 34445677632 45677766 56899876664
No 81
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=25.81 E-value=1.3e+02 Score=29.32 Aligned_cols=56 Identities=9% Similarity=0.178 Sum_probs=45.7
Q ss_pred cHHHHHHHHH-HHHhhCCHHHHHHHHHHHchhccCCCChhhHHHHHHHHHHHHHHhc
Q 008153 205 QLVHTLMACA-EAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYR 260 (576)
Q Consensus 205 ~Lv~LLlaCA-eAV~~gd~~~A~~lL~~i~~las~~g~~~qRlA~yFaeAL~~Rl~~ 260 (576)
.+..+|+-|. -.+..++...|..++..|..+..|..+...|+...|.+|+..=..+
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 3556666665 7788899999999999999988777788899999999999754433
No 82
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=25.74 E-value=2.5e+02 Score=31.32 Aligned_cols=114 Identities=23% Similarity=0.309 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEecccCCCc-chHHHHHHHh--------cCCCCCCeeeEeecCCCCCCChHHHHHHHH
Q 008153 288 FAHFTANQAILEAFNNANRVHVIDFSLKQGM-QWPALMQALA--------LRPGGPPAFRLTGIGPPQPDNTDALQQVGW 358 (576)
Q Consensus 288 fahftANqAILEA~~g~~~VHIIDf~I~~G~-QWpsLiqaLA--------~RpgGPP~LRITgI~~p~~~~~~~L~etG~ 358 (576)
|+-+.||..+ +.-.+|-|||.|+||-- -=|..| +|+ .+...|++..+-|.-.|+......+.-+ .
T Consensus 89 Lt~~LaN~~l----~rG~~v~iiDaDvGQ~ei~pPg~I-SL~~~~s~~~~L~~l~~~~~~FvG~isP~~~~~~~i~~v-~ 162 (398)
T COG1341 89 LTTYLANKLL----ARGRKVAIIDADVGQSEIGPPGFI-SLAFPESPVISLSELEPFTLYFVGSISPQGFPGRYIAGV-A 162 (398)
T ss_pred HHHHHHHHHh----hcCceEEEEeCCCCCcccCCCceE-EeecccCCCCCHHHcCccceEEEeccCCCCChHHHHHHH-H
Confidence 3445566543 33456999999998642 112111 111 1112455555655556654444444333 4
Q ss_pred HHHHHHhHcCceeEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEecC
Q 008153 359 KLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQE 438 (576)
Q Consensus 359 rL~~fA~slgVpFeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvEqe 438 (576)
||.++|+.. -+.++||+.-..+ -.+.++-....|...+|.+|+.+|.+
T Consensus 163 rL~~~a~~~----------------------------~~~ilIdT~GWi~----G~~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 163 RLVDLAKKE----------------------------ADFILIDTDGWIK----GWGGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred HHHHHhhcc----------------------------CCEEEEcCCCcee----CchHHHHHHHHHhhcCCCEEEEeccc
Confidence 666666543 0355666543332 12457777888999999999999765
Q ss_pred C
Q 008153 439 A 439 (576)
Q Consensus 439 a 439 (576)
-
T Consensus 211 ~ 211 (398)
T COG1341 211 N 211 (398)
T ss_pred c
Confidence 3
No 83
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=25.46 E-value=78 Score=27.71 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=48.0
Q ss_pred HHHHHHhHcCceeEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEEecC
Q 008153 359 KLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQE 438 (576)
Q Consensus 359 rL~~fA~slgVpFeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlvEqe 438 (576)
.|+.+.+..|...++-.... +.+++.......++ ..+++++.+.-+ + .....+.+.+|+.+|++.|++
T Consensus 19 ~la~~l~~~G~~v~~~d~~~-~~~~l~~~~~~~~p---d~V~iS~~~~~~-~----~~~~~l~~~~k~~~p~~~iv~--- 86 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANV-PPEELVEALRAERP---DVVGISVSMTPN-L----PEAKRLARAIKERNPNIPIVV--- 86 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB--HHHHHHHHHHTTC---SEEEEEESSSTH-H----HHHHHHHHHHHTTCTTSEEEE---
T ss_pred HHHHHHHHCCCeEEEECCCC-CHHHHHHHHhcCCC---cEEEEEccCcCc-H----HHHHHHHHHHHhcCCCCEEEE---
Confidence 56677777888777665321 12222222223344 488888742221 1 124678888999999988876
Q ss_pred CCCCCchhHHHHHHHHHHH
Q 008153 439 ANHNSPVFLDRFTEALHYY 457 (576)
Q Consensus 439 anhNsp~F~~RF~EAL~yY 457 (576)
.++.+.....+.|++|
T Consensus 87 ---GG~~~t~~~~~~l~~~ 102 (121)
T PF02310_consen 87 ---GGPHATADPEEILREY 102 (121)
T ss_dssp ---EESSSGHHHHHHHHHH
T ss_pred ---ECCchhcChHHHhccC
Confidence 2444444445555555
No 84
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=25.34 E-value=3e+02 Score=27.22 Aligned_cols=67 Identities=21% Similarity=0.334 Sum_probs=41.0
Q ss_pred CeeEE-Eeccc---CCCcch---HHHHHHHhcCCCCCCeeeEeecCCC--CCCChHHHHHHHHHHHHHHhHc----Ccee
Q 008153 305 NRVHV-IDFSL---KQGMQW---PALMQALALRPGGPPAFRLTGIGPP--QPDNTDALQQVGWKLAQLADTI----GVEF 371 (576)
Q Consensus 305 ~~VHI-IDf~I---~~G~QW---psLiqaLA~RpgGPP~LRITgI~~p--~~~~~~~L~etG~rL~~fA~sl----gVpF 371 (576)
-+||| ||=|+ ..|+.+ +.+++.+.. -|.|+|.||..- +..+.+...+.-+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 47898 89885 488865 445555533 355888888532 2233345566666777777665 4666
Q ss_pred EEee
Q 008153 372 EFRG 375 (576)
Q Consensus 372 eF~~ 375 (576)
++-.
T Consensus 193 ~~is 196 (222)
T cd00635 193 KELS 196 (222)
T ss_pred CEEE
Confidence 6544
No 85
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=25.17 E-value=5.8e+02 Score=25.79 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=49.6
Q ss_pred eEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCc-eeEEeeeecCCCCCCC
Q 008153 307 VHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGV-EFEFRGFVCNSLADLE 385 (576)
Q Consensus 307 VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgV-pFeF~~v~~~~ledl~ 385 (576)
=+|+|+|.|.|.--. + ++... .+.-+||||+.. ...++...++. +..++ ..+|.. ..++++.
T Consensus 79 ~~VLDiG~G~G~~~~-~---~a~~~--g~~~~v~gvD~s----~~~l~~A~~~~----~~~g~~~v~~~~---~d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGGGFDCF-L---AARRV--GPTGKVIGVDMT----PEMLAKARANA----RKAGYTNVEFRL---GEIEALP 141 (272)
T ss_pred CEEEEeCCCCCHHHH-H---HHHHh--CCCCEEEEECCC----HHHHHHHHHHH----HHcCCCCEEEEE---cchhhCC
Confidence 389999998875222 1 22211 244589999842 34444433332 33443 233332 2333332
Q ss_pred ccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHHHhcCCcEEEEE
Q 008153 386 PDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIV 435 (576)
Q Consensus 386 ~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~Ir~L~PkIvtlv 435 (576)
+..+.-..++.|+++ |+..+ ....+=...|-|+|.-.+++
T Consensus 142 -----~~~~~fD~Vi~~~v~--~~~~d---~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 -----VADNSVDVIISNCVI--NLSPD---KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred -----CCCCceeEEEEcCcc--cCCCC---HHHHHHHHHHHcCCCcEEEE
Confidence 111111355556654 54432 23333345577899866553
No 86
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=24.40 E-value=6.4e+02 Score=24.19 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=55.9
Q ss_pred HHHHHHhhcc---CCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce
Q 008153 294 NQAILEAFNN---ANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE 370 (576)
Q Consensus 294 NqAILEA~~g---~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp 370 (576)
.+.+++.+.. .+..+|+|+|-|.|.- ...|+.+ + |..++|+|+.. ...++....++. . ++
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~----~~~~~~~~~~~~----~-~~- 82 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDIS----AGMLAQAKTKLS----E-NV- 82 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeCh----HHHHHHHHHhcC----C-CC-
Confidence 3344444442 3346899999999963 3333333 1 45679999842 333433333322 0 22
Q ss_pred eEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 008153 371 FEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIVE 436 (576)
Q Consensus 371 FeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlvE 436 (576)
+|. ...++++.. .. +..=+|-+.+.||++.+ ...+|..+ +.|+|.-++++.
T Consensus 83 -~~~---~~d~~~~~~-----~~--~~fD~vi~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 83 -QFI---CGDAEKLPL-----ED--SSFDLIVSNLALQWCDD----LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred -eEE---ecchhhCCC-----CC--CceeEEEEhhhhhhccC----HHHHHHHHHHHcCCCcEEEEE
Confidence 232 123333221 11 11223334455777633 44566665 567998777654
No 87
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=24.19 E-value=1.2e+02 Score=31.16 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=34.7
Q ss_pred hcchhhHHH-HHHHHHHH----HhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCC
Q 008153 282 TCPYLKFAH-FTANQAIL----EAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGP 344 (576)
Q Consensus 282 ~~P~~kfah-ftANqAIL----EA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~ 344 (576)
..|=-+++. |..|+.|+ +.+.-.+.-+|+|+|-|.|. +...|+.+ ++ ++|||+.
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~ 72 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEI 72 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEEC
Confidence 344444444 55554444 44443455689999999885 66777766 22 8999984
No 88
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.95 E-value=1.6e+02 Score=29.55 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=38.1
Q ss_pred HHhhccCCeeEEEecccCCC---cchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHH
Q 008153 298 LEAFNNANRVHVIDFSLKQG---MQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLA 364 (576)
Q Consensus 298 LEA~~g~~~VHIIDf~I~~G---~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA 364 (576)
|-+++-.+.=|++|+|-+.| .+|. + + .|..|+++|+ .+.+.++.+.+++.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~----~-----~p~~~v~AIe----~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-L----A-----GPSGRVIAIE----RDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-H----h-----CCCceEEEEe----cCHHHHHHHHHHHHHhC
Confidence 44555455559999999887 4665 1 1 4789999999 56778888888876664
No 89
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=23.74 E-value=6.1e+02 Score=23.76 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=21.1
Q ss_pred EEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEE-EEecC
Q 008153 400 AVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIIT-IVEQE 438 (576)
Q Consensus 400 aVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvt-lvEqe 438 (576)
+|-+.+.||++.+ ...+|+.+ |-|+|.-.+ +.|-.
T Consensus 47 ~v~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 47 AVTMGYGLRNVVD----RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred EEEecchhhcCCC----HHHHHHHHHHHcCcCeEEEEEECC
Confidence 4445677888743 45555554 778998544 44443
No 90
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=21.49 E-value=1.7e+02 Score=29.03 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=69.3
Q ss_pred CeeEEEecccC---CCcchHHHHHHHhcCCCCCCeeeE------eecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEee
Q 008153 305 NRVHVIDFSLK---QGMQWPALMQALALRPGGPPAFRL------TGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRG 375 (576)
Q Consensus 305 ~~VHIIDf~I~---~G~QWpsLiqaLA~RpgGPP~LRI------TgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~ 375 (576)
.+||||.|=-+ -+-.=-.+|.+|+.+ .|.+ |||.. .+....++.-+..|+++.++.|-|..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~-----dd~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINA-----DDAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEEC-----ccchhhHHHHHHHHHHHhcccCCcce
Confidence 58999998543 334555799999644 2667 88873 23466788889999999999888777
Q ss_pred eecCCCCCCCccccccCCCCCce-EEEEehhhhhhccCC---CChHHHHHHHHHhc
Q 008153 376 FVCNSLADLEPDMLDIRPPEVET-VAVNSVFELHRLLAR---PGGIEKVVSSIKAM 427 (576)
Q Consensus 376 v~~~~ledl~~~~L~lr~~~~Ea-LaVN~~~~Lh~L~~~---~~~~d~vL~~Ir~L 427 (576)
++.+. +......++++. --++ ++||-.-.+..-..- ...++.++..|+++
T Consensus 129 vllD~-~g~v~~~~gv~~-~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 129 VVLDD-KGAVKNAWQLNS-EDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred EEECC-cchHHHhcCCCC-CCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 66543 222223445543 1266 688876555433221 12345667776654
No 91
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=20.99 E-value=3.3e+02 Score=26.68 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=55.3
Q ss_pred CeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCc-eeEEeeeecCCC-C
Q 008153 305 NRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGV-EFEFRGFVCNSL-A 382 (576)
Q Consensus 305 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgV-pFeF~~v~~~~l-e 382 (576)
+.-.|+|+|-|.|.-...| +.+ .|.-++|||+. +.+.++...+++.. .++ .++|.. .++ +
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~---~p~~~v~gVD~----s~~~i~~a~~~~~~----~~~~~v~~~~---~d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKA---NPDINFIGIEV----HEPGVGKALKKIEE----EGLTNLRLLC---GDAVE 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHH---CCCccEEEEEe----chHHHHHHHHHHHH----cCCCCEEEEe---cCHHH
Confidence 4567999999999854444 333 14468999994 34455544444432 233 244432 222 2
Q ss_pred CCCccccccCCCCCceEEEEehhhhhhccC--CCChHHHHHHHH-HhcCCcEEEEE
Q 008153 383 DLEPDMLDIRPPEVETVAVNSVFELHRLLA--RPGGIEKVVSSI-KAMRPKIITIV 435 (576)
Q Consensus 383 dl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~--~~~~~d~vL~~I-r~L~PkIvtlv 435 (576)
.+.. .+.++.-..+++|.....++... .....+.+|+.+ +-|+|.-++++
T Consensus 102 ~l~~---~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 102 VLLD---MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHH---HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 2210 01111124566664432221111 011246677776 58899766654
No 92
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=20.77 E-value=2.2e+02 Score=27.03 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=62.4
Q ss_pred HHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCce-e
Q 008153 293 ANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE-F 371 (576)
Q Consensus 293 ANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVp-F 371 (576)
+-..+++.+...+.=+|+|+|.|.|. +=-.|+.+ -|..++|+++ .+...++-+.+.+ +..+++ .
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~----i~~~la~~---~~~~~v~~vD----i~~~a~~~a~~n~----~~n~~~~v 83 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGV----ISLALAKR---GPDAKVTAVD----INPDALELAKRNA----ERNGLENV 83 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSH----HHHHHHHT---STCEEEEEEE----SBHHHHHHHHHHH----HHTTCTTE
T ss_pred HHHHHHHHHhhccCCeEEEecCChHH----HHHHHHHh---CCCCEEEEEc----CCHHHHHHHHHHH----HhcCcccc
Confidence 45577777776567779999999995 22234443 3568899998 4556665554443 344554 3
Q ss_pred EEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCC-ChHHHHH-HHHHhcCCcEEEE
Q 008153 372 EFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARP-GGIEKVV-SSIKAMRPKIITI 434 (576)
Q Consensus 372 eF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~-~~~d~vL-~~Ir~L~PkIvtl 434 (576)
++. ..+-++.+.. +.-..++.|=. +|.-.+.. ...+.++ ..-+-|+|.-..+
T Consensus 84 ~~~--~~d~~~~~~~-------~~fD~Iv~NPP--~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 84 EVV--QSDLFEALPD-------GKFDLIVSNPP--FHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp EEE--ESSTTTTCCT-------TCEEEEEE-----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccc--cccccccccc-------cceeEEEEccc--hhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 333 2332333321 12257777754 23211100 1234444 4457789987653
No 93
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=20.44 E-value=7.8e+02 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=21.1
Q ss_pred eeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCC
Q 008153 306 RVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGP 344 (576)
Q Consensus 306 ~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~ 344 (576)
.-.|+|.|-|.|. -+..||.+ | ..+|||+.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-G----~~V~avD~ 67 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-G----HEVLGVEL 67 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-C----CeEEEEcc
Confidence 3478999988884 34456654 3 68999994
No 94
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=20.07 E-value=1.8e+02 Score=30.01 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhcccchhhcccCCCCccc-ccchhhHHHHHhcCCCccccCChHHHHHHHHHHHhc
Q 008153 474 QDQVMSEVYLGRQICNIVACDGTDRNER-HETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALF 537 (576)
Q Consensus 474 ~~r~~~E~~lgreI~NiVAcEG~eRvER-hE~~~qWr~Rm~~AGF~pv~ls~~a~~qA~~LL~~~ 537 (576)
+++.|.|. --|+|.|+|+..+.+..-+ |-+-.+=...|+.|||...|+. .+..|+...++.-
T Consensus 91 qR~~m~e~-k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K-~ae~Qv~evlK~l 153 (234)
T COG1500 91 QRREMLEE-KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFK-SAEEQVQEVLKAL 153 (234)
T ss_pred HHHHHHHH-HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCC-CHHHHHHHHHHHH
Confidence 44444332 4589999999988776544 6667788889999999999987 4577877766543
Done!