BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008154
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 331 bits (848), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 206/516 (39%), Positives = 289/516 (56%), Gaps = 35/516 (6%)
Query: 67 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 126
N+VFV AE AP+SKTGGLGDV G LP A+AA GHRVMV+SPRY + + A D
Sbjct: 11 NVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRY-------DQYKDAWDTS 63
Query: 127 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSY-----HRPGNP-YGDINGA-FGDNQF 179
+I + + FFH Y+ GVD VF+DHPS+ + G YG G + DNQ
Sbjct: 64 VVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQM 123
Query: 180 RYTLLCYAACEAPLVLPLGGF-----TYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKD 234
R++LLC AA EAP +L L TYGE +F+ NDWH G + L + Y+P+G+Y++
Sbjct: 124 RFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRN 183
Query: 235 ARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT---GEAVNVLK 291
A+ IHN+S+QG Y L L + + +++ DT G +N +K
Sbjct: 184 AKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFI-------DGYDTPVEGRKINWMK 236
Query: 292 GAIVTADRLLTVSKGYSWE-ITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEH 350
I+ ADR+LTVS Y+ E I+ + G L I+ R + + GI NG+D++EW+PS D++
Sbjct: 237 AGILEADRVLTVSPYYAEELISGIARGCELDNIM--RLTGITGIVNGMDVSEWDPSKDKY 294
Query: 351 IASHY-SIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA 409
I + Y + + K K ALQ E GLP+ PLI FIGRL+ QKG D++ A PE++
Sbjct: 295 ITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ 354
Query: 410 DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPC 469
+D+Q V+LG+G +FE ++ E Y K R V FN P++H I AG D+L +PSRFEPC
Sbjct: 355 EDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPC 414
Query: 470 GLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFA 529
GL QL MRYGT +TGGL DTV G P + + L+ A
Sbjct: 415 GLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRA 474
Query: 530 IRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQVF 565
I+ ++E ++R M +D +W+ A +E V
Sbjct: 475 IKVV--GTPAYEEMVRNCMNQDLSWKGPAKNWENVL 508
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 253/503 (50%), Gaps = 35/503 (6%)
Query: 67 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 126
++ V++E P KTGGL DV G+LP A A G V+ P + + D
Sbjct: 2 QVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG------VTDAQ 55
Query: 127 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS-YHRPGNPYGDIN-GAFGDNQFRYTLL 184
+ F G + F H GV +D P Y RPG+PY D N A+ DN R+ LL
Sbjct: 56 VVSRRDTFAGHITLLFGH--YNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALL 113
Query: 185 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 244
+ E + G + + +DWHAGL P LA++ RP A+S+ +HNL
Sbjct: 114 GWVGAE----MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNL 163
Query: 245 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 304
++QG+ A ++ LP W F H L+ ++ LK + AD + VS
Sbjct: 164 AYQGMFYAHHMNDIQLP--------WSF---FNIHGLEFNGQISFLKAGLYYADHITAVS 212
Query: 305 KGYSWEITTVEGGYGLHEILSSR--KSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG 362
Y+ EIT + YG+ +L R + L+G+ NG+D W+P +D +AS Y+ D L
Sbjct: 213 PTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED 272
Query: 363 KVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDP 422
K + K LQ +GL + PL + RL QKG+DL+ A P +L Q +LG+GDP
Sbjct: 273 KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDP 332
Query: 423 QFESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTI 482
+ A Y + +G++ SHRI G D++L+PSRFEPCGL QLY ++YGT+
Sbjct: 333 VLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL 392
Query: 483 PVVHATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFAIRTYREHKSSWEG 542
P+V TGGL DTV + + G +G+ F + S+L A+R A + S W
Sbjct: 393 PLVRRTGGLADTVSD-SSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLW-SRPSLWRF 450
Query: 543 LMRRGMEKDYTWENAAIQYEQVF 565
+ R+ M D++W+ AA Y +++
Sbjct: 451 VQRQAMAMDFSWQVAAKSYRELY 473
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 252/503 (50%), Gaps = 35/503 (6%)
Query: 67 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 126
++ V +E P KTGGL DV G+LP A A G V+ P + + D
Sbjct: 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG------VTDAQ 55
Query: 127 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS-YHRPGNPYGDIN-GAFGDNQFRYTLL 184
+ F G + F H GV +D P Y RPG+PY D N A+ DN R+ LL
Sbjct: 56 VVSRRDTFAGHITLLFGH--YNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALL 113
Query: 185 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 244
+ E + G + + +DWHAGL P LA++ RP A+S+ +HNL
Sbjct: 114 GWVGAE----MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNL 163
Query: 245 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 304
++QG+ A ++ LP W F H L+ ++ LK + AD + VS
Sbjct: 164 AYQGMFYAHHMNDIQLP--------WSF---FNIHGLEFNGQISFLKAGLYYADHITAVS 212
Query: 305 KGYSWEITTVEGGYGLHEILSSR--KSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG 362
Y+ EIT + YG+ +L R + L+G+ NG+D W+P +D +AS Y+ D L
Sbjct: 213 PTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED 272
Query: 363 KVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDP 422
K + K LQ +GL + PL + RL QKG+DL+ A P +L Q +LG+GDP
Sbjct: 273 KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDP 332
Query: 423 QFESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTI 482
+ A Y + +G++ SHRI G D++L+PSRFEPCGL QLY ++YGT+
Sbjct: 333 VLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL 392
Query: 483 PVVHATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFAIRTYREHKSSWEG 542
P+V TGGL DTV + + G +G+ F + S+L A+R A + S W
Sbjct: 393 PLVRRTGGLADTVSDCS-LENLADGVASGFVFEDSNAWSLLRAIRRAFVLW-SRPSLWRF 450
Query: 543 LMRRGMEKDYTWENAAIQYEQVF 565
+ R+ M D++W+ AA Y +++
Sbjct: 451 VQRQAMAMDFSWQVAAKSYRELY 473
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 169/503 (33%), Positives = 251/503 (49%), Gaps = 35/503 (6%)
Query: 67 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 126
++ V +E P KTGGL DV G+LP A A G V+ P + + D
Sbjct: 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG------VTDAQ 55
Query: 127 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS-YHRPGNPYGDIN-GAFGDNQFRYTLL 184
+ F G + F H GV +D P Y RPG+PY D N A+ DN R+ LL
Sbjct: 56 VVSRRDTFAGHITLLFGH--YNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALL 113
Query: 185 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 244
+ E + G + + +DWHAGL P LA++ RP A+S+ +HNL
Sbjct: 114 GWVGAE----MASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNL 163
Query: 245 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 304
++QG+ A ++ LP W F H L+ ++ LK + AD + VS
Sbjct: 164 AYQGMFYAHHMNDIQLP--------WSF---FNIHGLEFNGQISFLKAGLYYADHITAVS 212
Query: 305 KGYSWEITTVEGGYGLHEILSSR--KSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG 362
Y+ EIT + YG+ +L R + L+G+ NG+D W+P +D +AS Y+ D L
Sbjct: 213 PTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED 272
Query: 363 KVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDP 422
K + K LQ +GL + PL + RL QKG+DL+ A P +L Q +LG+GDP
Sbjct: 273 KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDP 332
Query: 423 QFESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTI 482
+ A Y + +G++ SHRI G D++L+PSRF PCGL QLY ++YGT+
Sbjct: 333 VLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTL 392
Query: 483 PVVHATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFAIRTYREHKSSWEG 542
P+V TGGL DTV + + G +G+ F + S+L A+R A + S W
Sbjct: 393 PLVRRTGGLADTVSDCS-LENLADGVASGFVFEDSNAWSLLRAIRRAFVLW-SRPSLWRF 450
Query: 543 LMRRGMEKDYTWENAAIQYEQVF 565
+ R+ M D++W+ AA Y +++
Sbjct: 451 VQRQAMAMDFSWQVAAKSYRELY 473
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 261 bits (667), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 176/502 (35%), Positives = 254/502 (50%), Gaps = 32/502 (6%)
Query: 67 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 126
N++ V++E P KTGGL DV G+LP+AL A G R + P Y AA D
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA------VTDPV 55
Query: 127 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYH-RPGNPY-GDINGAFGDNQFRYTLL 184
C + GE+ E +D + +D P+Y+ R G PY G + DN R+ L
Sbjct: 56 KCFEFTDLLGEKA-DLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAAL 114
Query: 185 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 244
AA + G + +DW A + PV + P + S+L IHN+
Sbjct: 115 SLAAAR----IGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETP-----EIPSLLTIHNI 165
Query: 245 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 304
+ QG A + L LP+ +G ++ V+ LKG + TA L TVS
Sbjct: 166 AFQGQFGANIFSKLALPAHAFG-----------MEGIEYYNDVSFLKGGLQTATALSTVS 214
Query: 305 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKV 364
Y+ EI T E G GL ++ SR VL+GI NGID WNP++D I +YS +L +
Sbjct: 215 PSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRA 274
Query: 365 QCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQF 424
K A+ + + PL I RL +QKGIDL+ A EI++ + V+LG+GD
Sbjct: 275 LNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVAL 333
Query: 425 ESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPV 484
E + + + + +G+N P+SH + AGCD +++PSRFEPCGL QLYA+RYG IPV
Sbjct: 334 EGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPV 393
Query: 485 VHATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFAIRTYREHKSSWEGLM 544
V TGGL DTV + N A S TG F P++ + + A+R +R Y + K W +
Sbjct: 394 VARTGGLADTVIDAN-HAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPK-LWTQMQ 451
Query: 545 RRGMEKDYTWENAAIQYEQVFE 566
+ GM+ D +WE +A Y ++
Sbjct: 452 KLGMKSDVSWEKSAGLYAALYS 473
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 175/502 (34%), Positives = 248/502 (49%), Gaps = 32/502 (6%)
Query: 67 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 126
N++ V++E P KTGGL DV G+LP+AL A G R + P Y AA D
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA------VTDPV 55
Query: 127 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYH-RPGNPY-GDINGAFGDNQFRYTLL 184
C + GE+ E +D + +D P+Y+ R G PY G + DN R+ L
Sbjct: 56 KCFEFTDLLGEKA-DLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAAL 114
Query: 185 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 244
AA + G +DW A PV Y + + S+L IHN+
Sbjct: 115 SLAAAR----IGAGVLPGWRPDXVHAHDWQAAXTPV-----YXRYAETPEIPSLLTIHNI 165
Query: 245 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 304
+ QG A + L LP+ +G ++ V+ LKG + TA L TVS
Sbjct: 166 AFQGQFGANIFSKLALPAHAFG-----------XEGIEYYNDVSFLKGGLQTATALSTVS 214
Query: 305 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKV 364
Y+ EI T E G GL ++ SR VL+GI NGID WNP++D I +YS +L +
Sbjct: 215 PSYAEEILTAEFGXGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRA 274
Query: 365 QCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQF 424
K A+ + + PL I RL +QKGIDL A EI++ + V+LG+GD
Sbjct: 275 LNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDVAL 333
Query: 425 ESWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPV 484
E + + + + +G+N P+SH AGCD +++PSRFEPCGL QLYA+RYG IPV
Sbjct: 334 EGALLAAASRHHGRVGVAIGYNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCIPV 393
Query: 485 VHATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFAIRTYREHKSSWEGLM 544
V TGGL DTV + N A S TG F P++ + + A+R +R Y + K W
Sbjct: 394 VARTGGLADTVIDAN-HAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPK-LWTQXQ 451
Query: 545 RRGMEKDYTWENAAIQYEQVFE 566
+ G + D +WE +A Y ++
Sbjct: 452 KLGXKSDVSWEKSAGLYAALYS 473
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 208/510 (40%), Gaps = 105/510 (20%)
Query: 80 KTGGLGDVCGSLPVALAARGHRVMVVSPRY--FNGTAADENFTLAKDLGCCMKICCFGGE 137
K GGL + ++ ALA+ GH V+V +P + F G +++G KI FG E
Sbjct: 17 KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQG----------EEIG---KIRVFGEE 63
Query: 138 QEIAFFHEYREGVDWV-----FVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAP 192
++ +E R + +D + PG G I A + LL E P
Sbjct: 64 VQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWD-GLIRKAVTFGRASVLLLNDLLREEP 122
Query: 193 LVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPA 252
L + +DWH L+ ++ V+ IH L+ + PA
Sbjct: 123 L-----------PDVVHFHDWHTVFAGALIKKYFKIPAVF-------TIHRLNKSKL-PA 163
Query: 253 ATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEIT 312
+ GL SE +P H TG + AD + TVS+GY +
Sbjct: 164 FYFHEAGL-SELAP-----YPDIDPEH---TGGYI---------ADIVTTVSRGYLID-- 203
Query: 313 TVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG-KVQCKIALQ 371
E G+ + + + + NGID + WN S L+G + + K +L
Sbjct: 204 --EWGF-----FRNFEGKITYVFNGIDCSFWNESY------------LTGSRDERKKSLL 244
Query: 372 KELGLPIRPDCPLIGFIGRLDY-QKGIDLIRLAAPEILA-----DDIQFVMLGSGDPQFE 425
+ G+ + FIGR D QKG+D++ L A EIL+ +++F+++G GDP+ E
Sbjct: 245 SKFGMD---EGVTFMFIGRFDRGQKGVDVL-LKAIEILSSKKEFQEMRFIIIGKGDPELE 300
Query: 426 SWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVV 485
W R E + + + + D +++PS FEP GL L AM G IP+
Sbjct: 301 GWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 360
Query: 486 HATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFAIRTYREHKSSW-EGLM 544
A GGLRD + N + G + A+ A+ R S + E
Sbjct: 361 SAVGGLRDIITNETGILVKAGDPG-----------ELANAILKALELSRSDLSKFRENCK 409
Query: 545 RRGMEKDYTWENAAIQYEQVFEWASIDPPY 574
+R M ++WE +A +Y + + SID +
Sbjct: 410 KRAM--SFSWEKSAERYVKAYT-GSIDRAF 436
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 208/510 (40%), Gaps = 105/510 (20%)
Query: 80 KTGGLGDVCGSLPVALAARGHRVMVVSPRY--FNGTAADENFTLAKDLGCCMKICCFGGE 137
K GGL + ++ ALA+ GH V+V +P + F G +++G KI FG E
Sbjct: 16 KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQG----------EEIG---KIRVFGEE 62
Query: 138 QEIAFFHEYREGVDWV-----FVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAP 192
++ +E R + +D + PG G I A + LL E P
Sbjct: 63 VQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWD-GLIRKAVTFGRASVLLLNDLLREEP 121
Query: 193 LVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPA 252
L + +DWH L+ ++ V+ IH L+ + PA
Sbjct: 122 L-----------PDVVHFHDWHTVFAGALIKKYFKIPAVF-------TIHRLNKSKL-PA 162
Query: 253 ATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEIT 312
+ GL SE +P H TG + AD + TVS+GY +
Sbjct: 163 FYFHEAGL-SELAP-----YPDIDPEH---TGGYI---------ADIVTTVSRGYLID-- 202
Query: 313 TVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG-KVQCKIALQ 371
E G+ + + + + NGID + WN S L+G + + K +L
Sbjct: 203 --EWGF-----FRNFEGKITYVFNGIDCSFWNESY------------LTGSRDERKKSLL 243
Query: 372 KELGLPIRPDCPLIGFIGRLDY-QKGIDLIRLAAPEILA-----DDIQFVMLGSGDPQFE 425
+ G+ + FIGR D QKG+D++ L A EIL+ +++F+++G GDP+ E
Sbjct: 244 SKFGMD---EGVTFMFIGRFDRGQKGVDVL-LKAIEILSSKKEFQEMRFIIIGKGDPELE 299
Query: 426 SWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVV 485
W R E + + + + D +++PS FEP GL L AM G IP+
Sbjct: 300 GWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 359
Query: 486 HATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFAIRTYREHKSSW-EGLM 544
A GGLRD + N + G + A+ A+ R S + E
Sbjct: 360 SAVGGLRDIITNETGILVKAGDPG-----------ELANAILKALELSRSDLSKFRENCK 408
Query: 545 RRGMEKDYTWENAAIQYEQVFEWASIDPPY 574
+R M ++WE +A +Y + + SID +
Sbjct: 409 KRAM--SFSWEKSAERYVKAYT-GSIDRAF 435
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 204/501 (40%), Gaps = 104/501 (20%)
Query: 80 KTGGLGDVCGSLPVALAARGHRVMVVSPRY--FNGTAADENFTLAKDLGCCMKICCFGGE 137
K GGL + ++ ALA+ GH V+V +P + F G +++G KI FG E
Sbjct: 16 KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQG----------EEIG---KIRVFGEE 62
Query: 138 QEIAFFHEYREGVDWV-----FVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAP 192
++ +E R + +D + PG G I A + LL E P
Sbjct: 63 VQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWD-GLIRKAVTFGRASVLLLNDLLREEP 121
Query: 193 LVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPA 252
L + +DWH L+ ++ V+ IH L+ + PA
Sbjct: 122 L-----------PDVVHFHDWHTVFAGALIKKYFKIPAVF-------TIHRLNKSKL-PA 162
Query: 253 ATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEIT 312
+ GL SE +P H TG + AD + TVS+GY +
Sbjct: 163 FYFHEAGL-SELAP-----YPDIDPEH---TGGYI---------ADIVTTVSRGYLID-- 202
Query: 313 TVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG-KVQCKIALQ 371
E G+ + + + + NGID + WN S L+G + + K +L
Sbjct: 203 --EWGF-----FRNFEGKITYVFNGIDCSFWNESY------------LTGSRDERKKSLL 243
Query: 372 KELGLPIRPDCPLIGFIGRLDY-QKGIDLIRLAAPEILA-----DDIQFVMLGSGDPQFE 425
+ G+ + FIGR D QKG+D++ L A EIL+ +++F+++G GDP+ E
Sbjct: 244 SKFGMD---EGVTFMFIGRFDRGQKGVDVL-LKAIEILSSKKEFQEMRFIIIGKGDPELE 299
Query: 426 SWMRDTEATYKDKYRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVV 485
W R E + + + + D +++PS FEP GL L AM G IP+
Sbjct: 300 GWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 359
Query: 486 HATGGLRDTVENFNPFAREGSGEGTGWSFLPLSEESMLTALRFAIRTYREHKSSW-EGLM 544
A GGLRD + N + G + A+ A+ R S + E
Sbjct: 360 SAVGGLRDIITNETGILVKAGDPG-----------ELANAILKALELSRSDLSKFRENCK 408
Query: 545 RRGMEKDYTWENAAIQYEQVF 565
+R M ++WE +A +Y + +
Sbjct: 409 KRAM--SFSWEKSAERYVKAY 427
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 23/172 (13%)
Query: 333 GITNGIDITEWNPSSDEHIASHYSIDDLSG-KVQCKIALQKELGLPIRPDCPLIGFIGRL 391
G NGID + WN S L+G + + K +L + G+ + FIGR
Sbjct: 1 GSHNGIDCSFWNESY------------LTGSRDERKKSLLSKFGMD---EGVTFMFIGRF 45
Query: 392 DY-QKGIDLIRLAAPEILA-----DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGF 445
D QKG+D++ L A EIL+ +++F+++G GDP+ E W R E + +
Sbjct: 46 DRGQKGVDVL-LKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEML 104
Query: 446 NVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVEN 497
+ + D +++PS FEP GL L AM G IP+ A GGLRD + N
Sbjct: 105 SREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN 156
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 35/185 (18%)
Query: 334 ITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDY 393
+ +G+D+ + P++ E K A +K+LG P+I RL
Sbjct: 168 LPSGVDVKRFTPATPED----------------KSATRKKLGF--TDTTPVIACNSRLVP 209
Query: 394 QKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRD--TEATYKDKYRGWVGFNVPI 449
+KG D + A P+++A D Q +++GSG ++ES +R T+ + K+ G + + I
Sbjct: 210 RKGQDSLIKAMPQVIAARPDAQLLIVGSG--RYESTLRRLATDVSQNVKFLGRLEYQDMI 267
Query: 450 SHRITAGCDILLMPSR-------FEPCGLNQLYAMRYGTIPVVHAT-GGLRDTVENFNPF 501
+ A DI MP+R E G+ L A G +PV+ T GG +TV
Sbjct: 268 N--TLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACG-VPVIAGTSGGAPETVTPATGL 324
Query: 502 AREGS 506
EGS
Sbjct: 325 VVEGS 329
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 35/185 (18%)
Query: 334 ITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDY 393
+ +G+D+ + P++ E K A +K+LG P+I RL
Sbjct: 168 LPSGVDVKRFTPATPED----------------KSATRKKLGF--TDTTPVIACNSRLVP 209
Query: 394 QKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRD--TEATYKDKYRGWVGFNVPI 449
+KG D + A P+++A D Q +++GSG ++ES +R T+ + K+ G + + I
Sbjct: 210 RKGQDSLIKAMPQVIAARPDAQLLIVGSG--RYESTLRRLATDVSQNVKFLGRLEYQDMI 267
Query: 450 SHRITAGCDILLMPSR-------FEPCGLNQLYAMRYGTIPVVHAT-GGLRDTVENFNPF 501
+ A DI MP+R E G+ L A G +PV+ T GG +TV
Sbjct: 268 N--TLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACG-VPVIAGTSGGAPETVTPATGL 324
Query: 502 AREGS 506
EGS
Sbjct: 325 VVEGS 329
>pdb|2Z8D|A Chain A, The Galacto-N-Biose-LACTO-N-Biose I-Binding Protein
(Gl-Bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Lacto-N- Biose
pdb|2Z8D|B Chain B, The Galacto-N-Biose-LACTO-N-Biose I-Binding Protein
(Gl-Bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Lacto-N- Biose
pdb|2Z8E|A Chain A, The Galacto-n-biose-/lacto-n-biose I-binding Protein
(gl-bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Galacto- N-biose
pdb|2Z8E|B Chain B, The Galacto-n-biose-/lacto-n-biose I-binding Protein
(gl-bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Galacto- N-biose
pdb|2Z8F|A Chain A, The Galacto-N-Biose-LACTO-N-Biose I-Binding Protein
(Gl-Bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Lacto-N- Tetraose
pdb|2Z8F|B Chain B, The Galacto-N-Biose-LACTO-N-Biose I-Binding Protein
(Gl-Bp) Of The Abc Transporter From Bifidobacterium
Longum In Complex With Lacto-N- Tetraose
Length = 412
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 21/94 (22%)
Query: 187 AACEAPLVL-PLGGFTYGEKCIFLVNDW--HAG--------LVPVLLASKYRPHGVYKDA 235
AA EAPL + GG GE + + DW +AG V VL SK+ K+A
Sbjct: 250 AAWEAPLFMTSSGGTGSGEWQVAQLGDWFGNAGKTGPDGGSAVAVLKNSKHP-----KEA 304
Query: 236 RSIL-----VIHNLSHQGVEPAATYKNLGLPSEW 264
L + +L QG+ PAAT ++ PSEW
Sbjct: 305 MEFLDWFNTQVPDLVSQGLVPAATTEDAETPSEW 338
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 44/232 (18%)
Query: 363 KVQCKIA--LQKELGLPIRPDCPLIGFIGRLDYQK---GIDLIRLAAPEILADDIQFVML 417
K++ KI L+++LG R + P I RLD +K G+ + E L D V+
Sbjct: 242 KIKAKITKYLERDLGSE-RMELPAIIASSRLDQKKNHYGLVEAYVQNKE-LQDKANLVLT 299
Query: 418 GSG-DPQFESWMRD-----------TEATYKDKYRGWVGFNVPISHRITAGC-------- 457
G + FE + R E + RG V S + AGC
Sbjct: 300 LRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKG 359
Query: 458 DILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFLPL 517
+ + S +EP GL + AM G VV GG + ++ G G P
Sbjct: 360 SVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILD----------GGKYGVLVDPE 409
Query: 518 SEESMLTALRFAIRTYREHKSSWEGLMRRG---MEKDYTWENAAIQYEQVFE 566
E + L A E + +W +G +E+ YTW+ A Y +V +
Sbjct: 410 DPEDIARGLLKAF----ESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQ 457
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 288 NVLKGAIVTADRLLTVSKGYSWEITTV----EGGYGLHEILSSRKSVLNGITNGIDITEW 343
++ K + T D ++ S+ E V + YGL ++L S + I I I W
Sbjct: 59 DIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFDYSNVIAILQKISINLW 118
Query: 344 NPSSDEHIASHY 355
NPS+D + H+
Sbjct: 119 NPSTDSLQSKHF 130
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 288 NVLKGAIVTADRLLTVSKGYSWEITTV----EGGYGLHEILSSRKSVLNGITNGIDITEW 343
++ K + T D ++ S+ E V + YGL ++L S + I I I W
Sbjct: 59 DIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFDYSNVIAILQKISINLW 118
Query: 344 NPSSDEHIASHY 355
NPS+D + H+
Sbjct: 119 NPSTDSLQSKHF 130
>pdb|3PKM|A Chain A, Crystal Structure Of Cas6 With Its Substrate Rna
pdb|3PKM|X Chain X, Crystal Structure Of Cas6 With Its Substrate Rna
Length = 269
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 2 KKTRISPGIYWVKKRTVLVWLSVFTLF----LLRVYHEVIDSSKDIDGYGVKKIE--DVE 55
K+ RI PGIY W VF + LL+V +EV K+ G+G+ K+E
Sbjct: 195 KRFRIKPGIYQT------AWHLVFRAYGNDDLLKVGYEVGFGEKNSLGFGMVKVEGNKTT 248
Query: 56 GEDKAQTRVSYN 67
E + Q ++++N
Sbjct: 249 KEAEEQEKITFN 260
>pdb|3I4H|X Chain X, Crystal Structure Of Cas6 In Pyrococcus Furiosus
Length = 273
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 2 KKTRISPGIYWVKKRTVLVWLSVFTLF----LLRVYHEVIDSSKDIDGYGVKKIE--DVE 55
K+ RI PGIY W VF + LL+V +EV K+ G+G+ K+E
Sbjct: 199 KRFRIKPGIYQT------AWHLVFRAYGNDDLLKVGYEVGFGEKNSLGFGMVKVEGNKTT 252
Query: 56 GEDKAQTRVSYN 67
E + Q ++++N
Sbjct: 253 KEAEEQEKITFN 264
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 70 FVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCM 129
F T P G G+ G P+ L G ++ + DE +T+ G
Sbjct: 8 FETFTEEPIRLIGEEGEWLGDFPLDL--EGEKLRRLYRDMLAARMLDERYTILIRTGKTS 65
Query: 130 KICCFGGEQ--EIAFFHEYREGVDWVF 154
I G + ++A H R G DWVF
Sbjct: 66 FIAPAAGHEAAQVAIAHAIRPGFDWVF 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,721,083
Number of Sequences: 62578
Number of extensions: 906281
Number of successful extensions: 1769
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 24
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)