Your job contains 1 sequence.
>008155
MEVLQPIPNVKIPKLNTFTNMRTRRIPAPRLNSHSIRAESSSSSFASSPAPLPSTAGEKM
VVKLVGAFNELTERMNVLSSSSSRLLFKALKLSIPMLQSLPLSPDSRSPLTKALSVALLL
ADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNLKLQVLDD
ETAAALRKFCLTYYDIRALILDLAIRLDMMRHLDYLPRYQQLMISLEVMKIHAPLAHAVA
TNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTDATLADLV
EDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTR
EIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVN
GTASHAFYKGGLTNPEEAKRLKAIMLAAAELAALRLKDIPSTNHKGFEFDWRDRVFRLLD
KNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLE
DRDDEYRTMLDEKLQMAGDSGLIQVYSTELGNRLAS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008155
(576 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2090487 - symbol:CRSH "Ca2+-activated RelA/spo... 1628 2.2e-167 1
TAIR|locus:2137869 - symbol:RSH1 "RELA/SPOT homolog 1" sp... 324 2.6e-26 1
TIGR_CMR|DET_0005 - symbol:DET_0005 "GTP pyrophosphokinas... 268 1.9e-25 3
TIGR_CMR|CBU_1375 - symbol:CBU_1375 "GTP pyrophosphokinas... 307 1.5e-24 1
TIGR_CMR|CBU_0303 - symbol:CBU_0303 "guanosine-3,5-bis(di... 250 4.1e-18 1
TIGR_CMR|CPS_4973 - symbol:CPS_4973 "guanosine-3,5-bis(di... 246 1.1e-17 1
TAIR|locus:2088262 - symbol:RSH2 "RELA/SPOT homolog 2" sp... 232 2.0e-16 2
TAIR|locus:2014335 - symbol:RSH3 "RELA/SPOT homolog 3" sp... 226 1.9e-15 1
UNIPROTKB|Q3A9Z8 - symbol:relA "GTP pyrophosphokinase" sp... 225 2.5e-15 1
TIGR_CMR|CHY_2223 - symbol:CHY_2223 "GTP pyrophosphokinas... 225 2.5e-15 1
TIGR_CMR|CJE_1408 - symbol:CJE_1408 "RelA/SpoT family pro... 222 5.6e-15 1
TIGR_CMR|GSU_2236 - symbol:GSU_2236 "GTP pyrophosphokinas... 202 8.6e-13 1
TIGR_CMR|SO_0359 - symbol:SO_0359 "guanosine-3,5-bis(diph... 200 1.4e-12 1
UNIPROTKB|Q4K899 - symbol:relA "GTP diphosphokinase" spec... 197 3.2e-12 1
TIGR_CMR|SPO_3203 - symbol:SPO_3203 "guanosine-3',5'-bis(... 195 5.2e-12 1
TIGR_CMR|BA_4637 - symbol:BA_4637 "GTP pyrophosphokinase"... 203 5.3e-12 2
UNIPROTKB|P0AG24 - symbol:spoT "guanosine 3'-diphosphate ... 194 6.3e-12 1
UNIPROTKB|P66014 - symbol:relA "Bifunctional (p)ppGpp syn... 191 1.5e-11 1
UNIPROTKB|Q9KNM2 - symbol:spoT "Guanosine-3',5'-bis(dipho... 189 2.2e-11 1
TIGR_CMR|VC_2710 - symbol:VC_2710 "guanosine-3',5'-bis(di... 189 2.2e-11 1
TIGR_CMR|SO_3455 - symbol:SO_3455 "GTP pyrophosphokinase"... 177 4.9e-10 1
UNIPROTKB|Q9S3S3 - symbol:relA "PpGpp synthetase I" speci... 175 8.2e-10 1
TIGR_CMR|VC_2451 - symbol:VC_2451 "GTP pyrophosphokinase"... 175 8.2e-10 1
UNIPROTKB|P0AG20 - symbol:relA "GDP pyrophosphokinase / G... 166 8.0e-09 1
TIGR_CMR|CPS_4115 - symbol:CPS_4115 "GTP pyrophosphokinas... 166 1.6e-08 2
UNIPROTKB|Q81LP1 - symbol:BAS4242 "Uncharacterized protei... 121 5.6e-05 1
TIGR_CMR|BA_4572 - symbol:BA_4572 "conserved hypothetical... 121 5.6e-05 1
UNIPROTKB|Q722B6 - symbol:LMOf2365_0818 "Putative unchara... 110 0.00048 2
>TAIR|locus:2090487 [details] [associations]
symbol:CRSH "Ca2+-activated RelA/spot homolog"
species:3702 "Arabidopsis thaliana" [GO:0005509 "calcium ion
binding" evidence=IEA;ISS] [GO:0015969 "guanosine tetraphosphate
metabolic process" evidence=IEA] [GO:0008728 "GTP diphosphokinase
activity" evidence=IGI] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR002048 InterPro:IPR007685 InterPro:IPR011992
Pfam:PF04607 Pfam:PF13499 PROSITE:PS50222 SMART:SM00054
SMART:SM00954 Prosite:PS00018 GO:GO:0009507 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005509 Gene3D:1.10.238.10
InterPro:IPR018247 HSSP:P09860 eggNOG:COG0317 InterPro:IPR026020
PANTHER:PTHR21262 GO:GO:0008728 GO:GO:0015969 EMBL:BT006180
EMBL:AK228656 IPI:IPI00528710 RefSeq:NP_188374.2 UniGene:At.38719
ProteinModelPortal:Q84R11 SMR:Q84R11 PaxDb:Q84R11 PRIDE:Q84R11
EnsemblPlants:AT3G17470.1 GeneID:821012 KEGG:ath:AT3G17470
TAIR:At3g17470 HOGENOM:HOG000241233 InParanoid:Q84R11 OMA:RYKSRYS
PhylomeDB:Q84R11 ProtClustDB:CLSN2679918 ArrayExpress:Q84R11
Genevestigator:Q84R11 Uniprot:Q84R11
Length = 583
Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
Identities = 334/528 (63%), Positives = 397/528 (75%)
Query: 56 AGEKMVVKLVGAFNELTERMNV--LSSSSSRLLFKALKLSIPMXXXXXXXXXXXXXXTKA 113
AG KMVV+LVGAFNE+TERMN LS+SSSRLLFKALKLSIP+ +KA
Sbjct: 57 AGGKMVVELVGAFNEVTERMNSVWLSTSSSRLLFKALKLSIPILQSLPLASDGRSPLSKA 116
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNL 173
LS++++LADLQMDAEVISA +L +VV++ +SI +VRD IG GTAHLLHE RVKN +
Sbjct: 117 LSLSIILADLQMDAEVISASILSEVVDANAISIYEVRDHIGTGTAHLLHEIFRVKN-IPF 175
Query: 174 KLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXMMRHLDYLPRYQQLMISLEVMKIHA 233
K+ VLDDETAA+LRKF LTYY MRHLD+LPRY+Q ++SLEV+KI++
Sbjct: 176 KVDVLDDETAASLRKFYLTYYDIRAVIMDLVSKLDEMRHLDHLPRYRQQILSLEVLKIYS 235
Query: 234 PLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTD 293
PLAHAV N+LS ELED+SFRYLFP SY+++D+WLR HE GSKPLID+YKEQL + LK D
Sbjct: 236 PLAHAVGANHLSLELEDISFRYLFPCSYIYLDSWLRGHENGSKPLIDVYKEQLHRSLKDD 295
Query: 294 ATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGE 353
LA++V DV ++GRYKSRYS MKKLL+DGR PEEVNDVLGLRVI+ P+S +VN EVGE
Sbjct: 296 LVLAEMVNDVYIKGRYKSRYSMMKKLLRDGRKPEEVNDVLGLRVILMPNS-VVNDVEVGE 354
Query: 354 RACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEE 413
+ACY T EII+SLWKE+PHRTKDYIARPK NGYRSLHMAVDVSD+ + RPLMEIQIRT +
Sbjct: 355 KACYRTSEIIRSLWKEIPHRTKDYIARPKENGYRSLHMAVDVSDSDQIRPLMEIQIRTMD 414
Query: 414 MDMLAVNGTASHAFYKGGLTNPEEAKRXXXXXXXXXXXXXXXXKDIPSTNHKGFEF--DW 471
MD A GTASH+ YKGGLT+P+EAKR KDI S H+ F+ +
Sbjct: 415 MDGSANAGTASHSLYKGGLTDPKEAKRLKAIMLAAADLAAIRLKDISSNKHQSFKTTTNQ 474
Query: 472 RDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQXXXXXXXXXXXXXEFDLFQK 531
RDRVF LLDKNGDG ISIEELMEVMEELGAPGEDA EMMQ EFD FQK
Sbjct: 475 RDRVFCLLDKNGDGMISIEELMEVMEELGAPGEDAEEMMQLLDSNSDGSLSSDEFDTFQK 534
Query: 532 QVEFMRNLEDRDDEYRTMLDEKLQ---MAGDSGLIQVYSTELGNRLAS 576
QVEFMR EDRD+EY+++LDEKL +GLIQ+Y+ EL +RL++
Sbjct: 535 QVEFMRKWEDRDNEYKSLLDEKLHDLPHQDTTGLIQLYNKELEDRLST 582
>TAIR|locus:2137869 [details] [associations]
symbol:RSH1 "RELA/SPOT homolog 1" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IEA] [GO:0015969
"guanosine tetraphosphate metabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009611 "response to wounding"
evidence=IEP] InterPro:IPR003607 InterPro:IPR007685 Pfam:PF04607
SMART:SM00471 SMART:SM00954 InterPro:IPR004095 InterPro:IPR012676
Pfam:PF02824 SUPFAM:SSF81271 GO:GO:0009507 EMBL:CP002687
GO:GO:0003824 GO:GO:0009611 Gene3D:3.10.20.30 InterPro:IPR012675
InterPro:IPR026020 PANTHER:PTHR21262 GO:GO:0015969 IPI:IPI00527107
RefSeq:NP_849287.2 UniGene:At.3876 UniGene:At.73164
ProteinModelPortal:F4JHA2 SMR:F4JHA2 PRIDE:F4JHA2
EnsemblPlants:AT4G02260.1 GeneID:828096 KEGG:ath:AT4G02260
OMA:RQMFLAM Uniprot:F4JHA2
Length = 884
Score = 324 (119.1 bits), Expect = 2.6e-26, P = 2.6e-26
Identities = 97/327 (29%), Positives = 162/327 (49%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGG-VSIQQVRDRIGIGTAHLLHESLRVKNNVN 172
++VA +L +L++D E I AGLL VE ++ +++ + G H++ +V
Sbjct: 177 VAVARILGELELDWESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGK 236
Query: 173 LKL----QVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLE 227
LK + + D A LR+ L MR L ++P ++Q I+ E
Sbjct: 237 LKCKTESETIQDVKADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGE 296
Query: 228 VMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRS-HETGSKPLIDIYKEQL 286
+++ APLA + + ELE+LSF Y+ Y V + + + ++ K L + + L
Sbjct: 297 TLQVFAPLAKLLGMYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRI-L 355
Query: 287 LQCLKTDATLADLVE-DVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLG-LRVIIKPSSN 344
++ ++ D L DLV + V+ K YS K LK + N + LR+++KP +
Sbjct: 356 VKKIEDDQFL-DLVTVNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPS 414
Query: 345 L-VNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRP 403
+ V ++ CY ++ +WK +P KDYIA PK NGY+SLH V + ++
Sbjct: 415 VGVGPLCSPQQICYHVLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTV-IPFLYESMF 473
Query: 404 LMEIQIRTEEMDMLAVNGTASHAFYKG 430
+E+QIRTEEMD++A G A +Y G
Sbjct: 474 RLEVQIRTEEMDLIAERGIA--VYYNG 498
>TIGR_CMR|DET_0005 [details] [associations]
symbol:DET_0005 "GTP pyrophosphokinase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0008728 "GTP diphosphokinase
activity" evidence=ISS] [GO:0015968 "stringent response"
evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
GO:GO:0016301 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:3.10.20.30 InterPro:IPR012675 eggNOG:COG0317
InterPro:IPR026020 PANTHER:PTHR21262 HOGENOM:HOG000018300 KO:K00951
GO:GO:0008728 GO:GO:0015969 TIGRFAMs:TIGR00691 RefSeq:YP_180760.1
ProteinModelPortal:Q3ZAI9 STRING:Q3ZAI9 GeneID:3229138
KEGG:det:DET0005 PATRIC:21607115 OMA:SGEPFIE ProtClustDB:CLSK836839
BioCyc:DETH243164:GJNF-5-MONOMER Uniprot:Q3ZAI9
Length = 728
Score = 268 (99.4 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 86/223 (38%), Positives = 117/223 (52%)
Query: 210 MRHLDYLPRYQQLMISLEVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLR 269
MR L L ++ I+ E M+I+APLAH + L ++LEDL+FRYL P Y V +
Sbjct: 154 MRTLQALSAEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPRHYRQVANLVD 213
Query: 270 SHETGSKPLIDIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLK---DGRIP 326
S K Y E + L+++ L V + GR K YS +K+ K G+
Sbjct: 214 SKLAQRKN----YIEHVSAILQSEFEKNGL--KVELSGRPKHLYSIYQKMEKYASQGKQF 267
Query: 327 EEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGY 386
E++ DVL LRV LVN ++ + CY I+ SLW +P DYIA PK NGY
Sbjct: 268 EDIYDVLALRV-------LVN--DIPD--CYHAIGIVHSLWHPIPGAFDDYIANPKPNGY 316
Query: 387 RSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYK 429
+SLH AV G T PL E+Q+RT +M +A G A+H YK
Sbjct: 317 QSLHTAV--MSLGTT-PL-EVQVRTYQMHHIAEYGVAAHWRYK 355
Score = 97 (39.2 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLL 161
L+VA+ LADLQ+D+ ++A LL V E +S++Q+ + G A L+
Sbjct: 49 LNVAITLADLQLDSATLAAALLHDVPEDAHISLEQIEKKFGADVAKLV 96
Score = 37 (18.1 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 538 NLEDRDDEYRTMLDEKLQMAGDSGLIQVYSTELGN 572
N EDR R +++ M G ++ T++ N
Sbjct: 363 NFEDRIGWLRQLIEWHRDMRGAEEFLESVKTDIFN 397
>TIGR_CMR|CBU_1375 [details] [associations]
symbol:CBU_1375 "GTP pyrophosphokinase" species:227377
"Coxiella burnetii RSA 493" [GO:0008728 "GTP diphosphokinase
activity" evidence=ISS] [GO:0015968 "stringent response"
evidence=ISS] InterPro:IPR004811 InterPro:IPR007685 Pfam:PF04607
SMART:SM00954 InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824
SUPFAM:SSF81271 GO:GO:0000166 GO:GO:0016301 EMBL:AE016828
GenomeReviews:AE016828_GR Gene3D:3.10.20.30 InterPro:IPR012675
InterPro:IPR026020 PANTHER:PTHR21262 HOGENOM:HOG000018300 KO:K00951
OMA:HRADCDQ GO:GO:0008728 GO:GO:0015969 TIGRFAMs:TIGR00691
RefSeq:NP_820364.1 ProteinModelPortal:Q83BW2 PRIDE:Q83BW2
GeneID:1209281 KEGG:cbu:CBU_1375 PATRIC:17931493
ProtClustDB:CLSK914739 BioCyc:CBUR227377:GJ7S-1363-MONOMER
Uniprot:Q83BW2
Length = 714
Score = 307 (113.1 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 95/325 (29%), Positives = 157/325 (48%)
Query: 112 KALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVK--N 169
K L++A LL L D+E ++A LL V G+S + + D+IG A LL + R++ +
Sbjct: 46 KGLAIASLLQPLHCDSETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETID 105
Query: 170 NVNLKLQVLDDETAAA--LRKFCLTYYXXXXXXXXXXXXX-XMMRHLDYLPRYQQLMISL 226
++ ++ + LRK L +R+ + P +Q I+
Sbjct: 106 DMLIRSSGFSQQQNFVDNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQ 165
Query: 227 EVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQL 286
++M ++APLA+ + +++ED +FRYL P Y + L + Y E+L
Sbjct: 166 KIMDLYAPLANRLGVGQFKWQMEDWAFRYLNPNEYSLISKSLNMRRVEREK----YIEKL 221
Query: 287 LQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLV 346
++ L+ +D +E ++ GR K YS +K+ + E+ D +R+++ S+L
Sbjct: 222 IEYLEGIFHGSD-IEKYNISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILV---SSLE 277
Query: 347 NTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLME 406
+ CYT I+ +LW+ + DYIA+PK NGYRS+H AV + G +E
Sbjct: 278 D--------CYTALSIVHALWEPIAKEFDDYIAKPKDNGYRSIHTAV-IGPEGHN---IE 325
Query: 407 IQIRTEEMDMLAVNGTASHAFYKGG 431
IQIRT M A G A+H YK G
Sbjct: 326 IQIRTYGMHEEAELGVAAHWKYKEG 350
>TIGR_CMR|CBU_0303 [details] [associations]
symbol:CBU_0303 "guanosine-3,5-bis(diphosphate)
3-pyrophosphohydrolase" species:227377 "Coxiella burnetii RSA 493"
[GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
activity" evidence=ISS] [GO:0009267 "cellular response to
starvation" evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
GO:GO:0016301 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.10.20.30 InterPro:IPR012675 KO:K01139 GO:GO:0008893
InterPro:IPR026020 PANTHER:PTHR21262 GO:GO:0008728 GO:GO:0015969
TIGRFAMs:TIGR00691 HOGENOM:HOG000018299 OMA:RAYFYAE
RefSeq:NP_819346.1 ProteinModelPortal:Q820X2 GeneID:1208185
KEGG:cbu:CBU_0303 PATRIC:17929301 ProtClustDB:CLSK913970
BioCyc:CBUR227377:GJ7S-310-MONOMER Uniprot:Q820X2
Length = 707
Score = 250 (93.1 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 75/221 (33%), Positives = 111/221 (50%)
Query: 210 MRHLDYLPRYQQLMISLEVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLR 269
MR L L ++ I+ E + I AP+ + LS ELE+L F L+P + + +R
Sbjct: 143 MRTLGSLHSQKRRRIARETLDIFAPIGKRLGMRELSVELEELGFAALYPLRHRALKDAVR 202
Query: 270 SHETGSKPLIDIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIP-EE 328
K ++ + ++ L L + ++ GR K YS +K+ ++ IP E
Sbjct: 203 RTRGNRKKILALIEKTLHVGLNQSR-----LSSYTITGREKHLYSIYRKM-RNKHIPFNE 256
Query: 329 VNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRS 388
+ DV RVI++ +V +CY II L+K +P R KDYIA PKANGY+S
Sbjct: 257 IMDVYAFRVIVE---------DVD--SCYRALGIIHGLFKPVPERFKDYIAIPKANGYQS 305
Query: 389 LHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYK 429
LH + G P+ E+QIRT EMD +A G A+H YK
Sbjct: 306 LHTTL-FGPYGL--PV-EVQIRTTEMDRMATKGIAAHWLYK 342
Score = 161 (61.7 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 59/229 (25%), Positives = 100/229 (43%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNL 173
++VA +LADL+MD + I A LL V+E V + + ++ G A L+ V +
Sbjct: 49 VAVAGILADLKMDYQTIMAALLHDVIEDTPVEKKAIAEKFGEEVAELVDG---VSKLTQI 105
Query: 174 KLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVMKIH 232
+ + A + RK L MR L L ++ I+ E + I
Sbjct: 106 EFVSRAEAQAESFRKMVLAMARDIRVIIVKLADRLHNMRTLGSLHSQKRRRIARETLDIF 165
Query: 233 APLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKT 292
AP+ + LS ELE+L F L+P + + +R K ++ + ++ L L
Sbjct: 166 APIGKRLGMRELSVELEELGFAALYPLRHRALKDAVRRTRGNRKKILALIEKTLHVGLNQ 225
Query: 293 DATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIP-EEVNDVLGLRVIIK 340
+ ++ GR K YS +K+ ++ IP E+ DV RVI++
Sbjct: 226 SR-----LSSYTITGREKHLYSIYRKM-RNKHIPFNEIMDVYAFRVIVE 268
>TIGR_CMR|CPS_4973 [details] [associations]
symbol:CPS_4973 "guanosine-3,5-bis(diphosphate)
3-pyrophosphohydrolase" species:167879 "Colwellia psychrerythraea
34H" [GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
activity" evidence=ISS] [GO:0015968 "stringent response"
evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.10.20.30
InterPro:IPR012675 eggNOG:COG0317 KO:K01139 GO:GO:0008893
InterPro:IPR026020 PANTHER:PTHR21262 GO:GO:0015969
TIGRFAMs:TIGR00691 HOGENOM:HOG000018299 OMA:RAYFYAE
RefSeq:YP_271612.1 ProteinModelPortal:Q47UB1 STRING:Q47UB1
DNASU:3519239 GeneID:3519239 KEGG:cps:CPS_4973 PATRIC:21472739
ProtClustDB:CLSK742426 BioCyc:CPSY167879:GI48-4974-MONOMER
Uniprot:Q47UB1
Length = 703
Score = 246 (91.7 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 73/220 (33%), Positives = 115/220 (52%)
Query: 210 MRHLDYLPRYQQLMISLEVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLR 269
MR L L ++ I+ E ++I+AP+A+ + + + ELE L F L+P + + ++
Sbjct: 144 MRTLGSLRPDKRRRIARETLEIYAPIANRLGIHDIKNELELLGFEALYPMRSRALKSAVQ 203
Query: 270 SHETGSKPLIDIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEV 329
S K +ID ++++ A LA+ D + GR K YS +K+L + EV
Sbjct: 204 SARGNRKAIIDNIEKEIA------ARLAESGIDAQIIGREKHLYSIYRKMLNKELMFNEV 257
Query: 330 NDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSL 389
D+ RVI+ + N CY + +L+K + R KDYIA PK NGY+SL
Sbjct: 258 MDIYAFRVIVH--DKIDN--------CYRALGAMHNLFKPIETRFKDYIAIPKTNGYQSL 307
Query: 390 HMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYK 429
H ++ + +G P+ EIQIRT +MD +A G A+H YK
Sbjct: 308 HTSL-IGPHGI--PV-EIQIRTHDMDQMADKGVAAHWLYK 343
Score = 170 (64.9 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 60/230 (26%), Positives = 104/230 (45%)
Query: 111 TKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNN 170
T ++VA+ LA + +D E + A LL V+E V+ ++ + G A L+ ++
Sbjct: 47 THPVAVAINLAQMNLDHETLMAALLHDVIEDTEVTKDELAELFGHTVAELVEGVSKLDK- 105
Query: 171 VNLKLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVM 229
LK ++ A RK L MR L L ++ I+ E +
Sbjct: 106 --LKFNNKEEMQAENFRKMVLAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETL 163
Query: 230 KIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQC 289
+I+AP+A+ + + + ELE L F L+P + + ++S K +ID ++++
Sbjct: 164 EIYAPIANRLGIHDIKNELELLGFEALYPMRSRALKSAVQSARGNRKAIIDNIEKEIA-- 221
Query: 290 LKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVII 339
A LA+ D + GR K YS +K+L + EV D+ RVI+
Sbjct: 222 ----ARLAESGIDAQIIGREKHLYSIYRKMLNKELMFNEVMDIYAFRVIV 267
>TAIR|locus:2088262 [details] [associations]
symbol:RSH2 "RELA/SPOT homolog 2" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0015969 "guanosine tetraphosphate metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0008728 "GTP diphosphokinase activity" evidence=IGI]
[GO:0009611 "response to wounding" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0007165
"signal transduction" evidence=RCA] [GO:0009414 "response to water
deprivation" evidence=RCA] [GO:0009620 "response to fungus"
evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
evidence=RCA] [GO:0009723 "response to ethylene stimulus"
evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0042538 "hyperosmotic salinity
response" evidence=RCA] InterPro:IPR003607 InterPro:IPR007685
Pfam:PF04607 SMART:SM00471 SMART:SM00954 GO:GO:0009737
GO:GO:0009507 EMBL:CP002686 GO:GO:0009611 GO:GO:0016301
EMBL:AB019229 eggNOG:COG0317 InterPro:IPR026020 PANTHER:PTHR21262
GO:GO:0008728 GO:GO:0015969 IPI:IPI00520491 RefSeq:NP_188021.1
UniGene:At.25183 ProteinModelPortal:Q9LVJ3 SMR:Q9LVJ3 STRING:Q9LVJ3
PaxDb:Q9LVJ3 PRIDE:Q9LVJ3 EnsemblPlants:AT3G14050.1 GeneID:820619
KEGG:ath:AT3G14050 TAIR:At3g14050 InParanoid:Q9LVJ3 OMA:CKYSSFV
PhylomeDB:Q9LVJ3 ProtClustDB:CLSN2684912 Genevestigator:Q9LVJ3
Uniprot:Q9LVJ3
Length = 709
Score = 232 (86.7 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 56/125 (44%), Positives = 73/125 (58%)
Query: 307 GRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSL 366
GR+KS YS K+LK +E++D+ GLR+I+ E CY ++ SL
Sbjct: 427 GRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIVD-----------NEGDCYKALGVVHSL 475
Query: 367 WKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHA 426
W E+P + KDYI PK NGY+SLH V DNG T PL E+QIRT+EM + A G A+H
Sbjct: 476 WSEVPGKLKDYITHPKFNGYQSLHTVV--MDNG-TVPL-EVQIRTQEMHLQAEFGFAAHW 531
Query: 427 FYKGG 431
YK G
Sbjct: 532 RYKEG 536
Score = 167 (63.8 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 59/229 (25%), Positives = 104/229 (45%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNL 173
+ A+LLA++ ++ V+ AGLL ++ +S + G G A L+ ++ L
Sbjct: 238 VETAMLLANIGANSTVVVAGLLHDTIDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKL 297
Query: 174 KLQ---VLDDETAAALRKFCLTYYXXXXXXXXXXXXXXMMRHLDYLPRYQQLMISLEVMK 230
+ A L L M+ L L +Q + E ++
Sbjct: 298 ARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLE 357
Query: 231 IHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCL 290
I APLA+ + + +LE+L F++L+P + + T L ++ + +I E+L Q L
Sbjct: 358 IFAPLANRLGISTWKVQLENLCFKHLYPNQHNEMSTMLE--DSFDEAMITSAIEKLEQAL 415
Query: 291 KTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVII 339
K A + V + GR+KS YS K+LK +E++D+ GLR+I+
Sbjct: 416 KK----AGISYHV-LCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIV 459
Score = 48 (22.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 245 SFELEDLSFRYLFPFSYL-FVDTWLRSHET 273
S +L+DLSF F +S FV+++ R H++
Sbjct: 87 SDDLKDLSFSSSFGYSPAKFVNSFRRDHQS 116
>TAIR|locus:2014335 [details] [associations]
symbol:RSH3 "RELA/SPOT homolog 3" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0015969 "guanosine tetraphosphate metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0008728 "GTP diphosphokinase activity" evidence=IGI]
InterPro:IPR003607 InterPro:IPR006674 InterPro:IPR007685
Pfam:PF01966 Pfam:PF04607 SMART:SM00471 SMART:SM00954 EMBL:CP002684
GO:GO:0009507 GO:GO:0046872 EMBL:AC006577 GO:GO:0008081
InterPro:IPR026020 PANTHER:PTHR21262 GO:GO:0008728 GO:GO:0015969
ProtClustDB:CLSN2684912 EMBL:AK227169 IPI:IPI00547761 PIR:D96582
RefSeq:NP_564652.2 UniGene:At.11116 ProteinModelPortal:Q9SYH1
SMR:Q9SYH1 STRING:Q9SYH1 EnsemblPlants:AT1G54130.1 GeneID:841853
KEGG:ath:AT1G54130 TAIR:At1g54130 HOGENOM:HOG000243166
InParanoid:Q9SYH1 OMA:QRMYERG PhylomeDB:Q9SYH1
Genevestigator:Q9SYH1 Uniprot:Q9SYH1
Length = 715
Score = 226 (84.6 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 66/176 (37%), Positives = 92/176 (52%)
Query: 259 FSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTDATLADLVEDVS---VQGRYKSRYST 315
F +L D + HE S L D + E ++ A E +S V GR+KS YS
Sbjct: 384 FKHLHPD---QHHEM-SDMLEDSFDEAMITSAIEKLEQALKKEGISYHVVSGRHKSLYSI 439
Query: 316 MKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTK 375
K+LK +E++D+ GLR+I+ E+ CY ++ LW E+P + K
Sbjct: 440 YCKMLKKKLTMDEIHDIHGLRLIVD-----------NEKDCYKALGVVHKLWSEVPGKLK 488
Query: 376 DYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431
DYI+ PK NGY+SLH V + D T PL E+QIRT+EM + A G A+H YK G
Sbjct: 489 DYISHPKFNGYQSLHTVV-MGDG--TIPL-EVQIRTKEMHLQAEFGFAAHWRYKEG 540
Score = 159 (61.0 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 57/229 (24%), Positives = 101/229 (44%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNL 173
+ A+LLAD+ ++ V+ AG+L ++ +S + G G A L+ ++ L
Sbjct: 242 VETAMLLADIGANSTVVVAGILHDTLDDSFMSYDYILRTFGSGVADLVEGVSKLSQLSKL 301
Query: 174 KLQ---VLDDETAAALRKFCLTYYXXXXXXXXXXXXXXMMRHLDYLPRYQQLMISLEVMK 230
+ A L L M L LP ++ + E ++
Sbjct: 302 ARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLYALPPVKRQRFAKETLE 361
Query: 231 IHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCL 290
I APLA+ + + +LE+L F++L P + + L ++ + +I E+L Q L
Sbjct: 362 IFAPLANRLGISSWKVKLENLCFKHLHPDQHHEMSDMLE--DSFDEAMITSAIEKLEQAL 419
Query: 291 KTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVII 339
K + +V GR+KS YS K+LK +E++D+ GLR+I+
Sbjct: 420 KKEGISYHVVS-----GRHKSLYSIYCKMLKKKLTMDEIHDIHGLRLIV 463
>UNIPROTKB|Q3A9Z8 [details] [associations]
symbol:relA "GTP pyrophosphokinase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008728 "GTP
diphosphokinase activity" evidence=ISS] [GO:0015968 "stringent
response" evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016301
Gene3D:3.10.20.30 InterPro:IPR012675 GO:GO:0015968 eggNOG:COG0317
InterPro:IPR026020 PANTHER:PTHR21262 HOGENOM:HOG000018300 KO:K00951
GO:GO:0008728 GO:GO:0015969 TIGRFAMs:TIGR00691 RefSeq:YP_361036.1
ProteinModelPortal:Q3A9Z8 SMR:Q3A9Z8 STRING:Q3A9Z8 GeneID:3727840
KEGG:chy:CHY_2223 PATRIC:21277513 OMA:SEKRIDR
BioCyc:CHYD246194:GJCN-2222-MONOMER Uniprot:Q3A9Z8
Length = 716
Score = 225 (84.3 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 71/231 (30%), Positives = 116/231 (50%)
Query: 111 TKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNN 170
T L+VA +LA LQMD E I+AGLL VVE +I+ + G A+L+ + + +
Sbjct: 47 THPLAVAFILAGLQMDDETIAAGLLHDVVEDTAYTIEDIAREFGEEVANLV-DGVTKLSR 105
Query: 171 VNLKLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVM 229
+ K + +++ LRK L MR L Y +Q I+ E +
Sbjct: 106 IEFKNK--EEQQVENLRKMFLAMAKDIRVILIKLADRLHNMRTLKYHNPEKQKEIARETL 163
Query: 230 KIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQC 289
+I APLAH + + +ELEDL+FRYL P +Y D + +T +K + Y +Q++
Sbjct: 164 EIFAPLAHRLGIYRIKWELEDLAFRYLDPDNYY--DIVEKIAKTRAKR--EQYIQQVISI 219
Query: 290 LKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIK 340
L+ ++ ++GR K YS +K+ + + EV DV+ +RVI++
Sbjct: 220 LEEKLKSYNI--KAKIEGRPKHLYSIFQKMREQQKDFSEVYDVMAVRVIVE 268
Score = 196 (74.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 62/175 (35%), Positives = 89/175 (50%)
Query: 259 FSYLFVDTWLRSHETGSKPLI--DIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTM 316
F YL D + E +K + Y +Q++ L+ ++ ++GR K YS
Sbjct: 187 FRYLDPDNYYDIVEKIAKTRAKREQYIQQVISILEEKLKSYNI--KAKIEGRPKHLYSIF 244
Query: 317 KKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKD 376
+K+ + + EV DV+ +RVI++ R CYT II ++W +P R KD
Sbjct: 245 QKMREQQKDFSEVYDVMAVRVIVE-----------SVRDCYTVLGIIHTMWIPVPGRFKD 293
Query: 377 YIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431
YIA PK+N Y+SLH V + G+ PL EIQIRT EM A G A+H YK G
Sbjct: 294 YIAMPKSNMYQSLHTTV-IGPFGE--PL-EIQIRTFEMHRTAEYGIAAHWRYKEG 344
>TIGR_CMR|CHY_2223 [details] [associations]
symbol:CHY_2223 "GTP pyrophosphokinase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008728 "GTP
diphosphokinase activity" evidence=ISS] [GO:0015968 "stringent
response" evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016301
Gene3D:3.10.20.30 InterPro:IPR012675 GO:GO:0015968 eggNOG:COG0317
InterPro:IPR026020 PANTHER:PTHR21262 HOGENOM:HOG000018300 KO:K00951
GO:GO:0008728 GO:GO:0015969 TIGRFAMs:TIGR00691 RefSeq:YP_361036.1
ProteinModelPortal:Q3A9Z8 SMR:Q3A9Z8 STRING:Q3A9Z8 GeneID:3727840
KEGG:chy:CHY_2223 PATRIC:21277513 OMA:SEKRIDR
BioCyc:CHYD246194:GJCN-2222-MONOMER Uniprot:Q3A9Z8
Length = 716
Score = 225 (84.3 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 71/231 (30%), Positives = 116/231 (50%)
Query: 111 TKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNN 170
T L+VA +LA LQMD E I+AGLL VVE +I+ + G A+L+ + + +
Sbjct: 47 THPLAVAFILAGLQMDDETIAAGLLHDVVEDTAYTIEDIAREFGEEVANLV-DGVTKLSR 105
Query: 171 VNLKLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVM 229
+ K + +++ LRK L MR L Y +Q I+ E +
Sbjct: 106 IEFKNK--EEQQVENLRKMFLAMAKDIRVILIKLADRLHNMRTLKYHNPEKQKEIARETL 163
Query: 230 KIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQC 289
+I APLAH + + +ELEDL+FRYL P +Y D + +T +K + Y +Q++
Sbjct: 164 EIFAPLAHRLGIYRIKWELEDLAFRYLDPDNYY--DIVEKIAKTRAKR--EQYIQQVISI 219
Query: 290 LKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIK 340
L+ ++ ++GR K YS +K+ + + EV DV+ +RVI++
Sbjct: 220 LEEKLKSYNI--KAKIEGRPKHLYSIFQKMREQQKDFSEVYDVMAVRVIVE 268
Score = 196 (74.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 62/175 (35%), Positives = 89/175 (50%)
Query: 259 FSYLFVDTWLRSHETGSKPLI--DIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTM 316
F YL D + E +K + Y +Q++ L+ ++ ++GR K YS
Sbjct: 187 FRYLDPDNYYDIVEKIAKTRAKREQYIQQVISILEEKLKSYNI--KAKIEGRPKHLYSIF 244
Query: 317 KKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKD 376
+K+ + + EV DV+ +RVI++ R CYT II ++W +P R KD
Sbjct: 245 QKMREQQKDFSEVYDVMAVRVIVE-----------SVRDCYTVLGIIHTMWIPVPGRFKD 293
Query: 377 YIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431
YIA PK+N Y+SLH V + G+ PL EIQIRT EM A G A+H YK G
Sbjct: 294 YIAMPKSNMYQSLHTTV-IGPFGE--PL-EIQIRTFEMHRTAEYGIAAHWRYKEG 344
>TIGR_CMR|CJE_1408 [details] [associations]
symbol:CJE_1408 "RelA/SpoT family protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
InterPro:IPR002912 InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF01842 Pfam:PF04607 SMART:SM00471
SMART:SM00954 InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824
SUPFAM:SSF81271 GO:GO:0003824 GO:GO:0016597 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:3.10.20.30 InterPro:IPR012675
eggNOG:COG0317 KO:K01139 InterPro:IPR026020 PANTHER:PTHR21262
GO:GO:0015969 TIGRFAMs:TIGR00691 HOGENOM:HOG000018299
RefSeq:YP_179394.1 ProteinModelPortal:Q5HTJ1 STRING:Q5HTJ1
GeneID:3231914 KEGG:cjr:CJE1408 PATRIC:20044618 OMA:TIHTTIF
ProtClustDB:CLSK872444 BioCyc:CJEJ195099:GJC0-1435-MONOMER
Uniprot:Q5HTJ1
Length = 731
Score = 222 (83.2 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 74/281 (26%), Positives = 130/281 (46%)
Query: 116 VALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHL---LHESLRVK--NN 170
VA L+ L + I A LL V+E + +++R++ G L L + + ++ N
Sbjct: 69 VATLVGFLSENKSNILAALLHDVIEDTNCTKEELREQFGSEVLKLVLGLTKIIEIREDNL 128
Query: 171 VNLKLQVLDDETAAALRKFCLTYYXXXXXXXXXX-XXXXMMRHLDYLPRYQQLMISLEVM 229
++ K + ++A R L M LD L +Q IS E +
Sbjct: 129 ISSKSKKSLTKSALTFRNMLLASIEDVGVLIVKLCDRLHNMLTLDILREDKQKRISEETL 188
Query: 230 KIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQC 289
++AP+AH + + + LEDLSF+YL P Y +D ++ S+ + ++ + ++
Sbjct: 189 VVYAPIAHRLGISSIKNYLEDLSFKYLMPDEYKLIDNYINSNNQEMQLGLNEFISKIELL 248
Query: 290 LKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTS 349
++ E +Q R K YS K+ + G EEV D+LG+R++++ S+
Sbjct: 249 FLSNGFRQGSFE---IQKRIKHSYSIYLKMQRKGIGIEEVLDLLGVRILVEKVSD----- 300
Query: 350 EVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLH 390
CY I+ + + + R KDYIA PK NGY+++H
Sbjct: 301 ------CYLALGILHTHFNPLVSRFKDYIALPKQNGYQTIH 335
Score = 156 (60.0 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 45/133 (33%), Positives = 70/133 (52%)
Query: 305 VQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQ 364
+Q R K YS K+ + G EEV D+LG+R++++ S+ CY I+
Sbjct: 261 IQKRIKHSYSIYLKMQRKGIGIEEVLDLLGVRILVEKVSD-----------CYLALGILH 309
Query: 365 SLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTAS 424
+ + + R KDYIA PK NGY+++H + D + ++E QIRT +M +A G A+
Sbjct: 310 THFNPLVSRFKDYIALPKQNGYQTIHTTL--FD---AKSIIEAQIRTFDMHKIAEFGIAA 364
Query: 425 HAFYK--GGLTNP 435
H YK G + P
Sbjct: 365 HWKYKEDGSVVAP 377
>TIGR_CMR|GSU_2236 [details] [associations]
symbol:GSU_2236 "GTP pyrophosphokinase" species:243231
"Geobacter sulfurreducens PCA" [GO:0008728 "GTP diphosphokinase
activity" evidence=ISS] [GO:0015968 "stringent response"
evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
GO:GO:0016301 GO:GO:0016787 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.10.20.30 InterPro:IPR012675 InterPro:IPR026020
PANTHER:PTHR21262 KO:K00951 GO:GO:0015969 TIGRFAMs:TIGR00691
HOGENOM:HOG000018299 OMA:RAYFYAE RefSeq:NP_953285.1
ProteinModelPortal:Q74AW3 SMR:Q74AW3 DNASU:2687525 GeneID:2687525
KEGG:gsu:GSU2236 PATRIC:22027327 ProtClustDB:CLSK924587
BioCyc:GSUL243231:GH27-2208-MONOMER Uniprot:Q74AW3
Length = 716
Score = 202 (76.2 bits), Expect = 8.6e-13, P = 8.6e-13
Identities = 64/227 (28%), Positives = 108/227 (47%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNL 173
+ VA +LADL++D + GLL +E + +++ G A+L+ ++ ++
Sbjct: 50 MEVAGVLADLKLDVPTVVTGLLHDTIEDTLTTREELEGMFGAEVANLVDGVTKI-GKIHF 108
Query: 174 KLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVMKIH 232
K + ++ A RK L MR L Y P +Q IS E + I+
Sbjct: 109 KTK--EESQAENFRKMLLAMANDIRVILVKLADRLHNMRTLQYQPEPKQRSISRETLDIY 166
Query: 233 APLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKT 292
APLA+ + +++ ELEDLSFRYL P ++ D L S K + Y E++ Q + +
Sbjct: 167 APLANRLGISWIKSELEDLSFRYLEP--QIYYD--LASKVAKKKKERESYVEEVRQIIVS 222
Query: 293 DATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVII 339
DL DV GR K YS +K+ +++ D++ +RV++
Sbjct: 223 KLAEHDLKGDVF--GRSKHLYSIWRKMQARNVDIDQIYDLVAIRVMV 267
Score = 200 (75.5 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 64/185 (34%), Positives = 92/185 (49%)
Query: 259 FSYLFVDTW--LRSHETGSKPLIDIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTM 316
F YL + L S K + Y E++ Q + + DL DV GR K YS
Sbjct: 187 FRYLEPQIYYDLASKVAKKKKERESYVEEVRQIIVSKLAEHDLKGDVF--GRSKHLYSIW 244
Query: 317 KKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKD 376
+K+ +++ D++ +RV++ +++ R CY II S WK +P R KD
Sbjct: 245 RKMQARNVDIDQIYDLVAIRVMV---------NDI--RECYEVLGIIHSTWKPIPGRFKD 293
Query: 377 YIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGGLTNPE 436
YIA PK N Y+SLH V + +G+ ME+QIRT +M +A G A+H YK G E
Sbjct: 294 YIAMPKGNMYQSLHTTV-IGPHGER---MEVQIRTSDMHRVAEAGIAAHWKYKEGKGYDE 349
Query: 437 -EAKR 440
E KR
Sbjct: 350 KEVKR 354
>TIGR_CMR|SO_0359 [details] [associations]
symbol:SO_0359 "guanosine-3,5-bis(diphosphate)
3-pyrophosphohydrolase" species:211586 "Shewanella oneidensis MR-1"
[GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
activity" evidence=ISS] [GO:0009267 "cellular response to
starvation" evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
GO:GO:0016301 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.10.20.30 InterPro:IPR012675 KO:K01139 GO:GO:0008893
InterPro:IPR026020 PANTHER:PTHR21262 GO:GO:0008728 GO:GO:0015969
TIGRFAMs:TIGR00691 HOGENOM:HOG000018299 OMA:RAYFYAE
ProtClustDB:PRK11092 RefSeq:NP_715999.1 ProteinModelPortal:Q8EJU8
GeneID:1168236 KEGG:son:SO_0359 PATRIC:23520423 Uniprot:Q8EJU8
Length = 701
Score = 200 (75.5 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 58/153 (37%), Positives = 84/153 (54%)
Query: 283 KEQLLQCLKTDATLADLVEDVSVQGRYKSR----YSTMKKLLKDGRIPEEVNDVLGLRVI 338
+++L+Q ++ A L L D ++G+ K R YS K+ +EV D+ RVI
Sbjct: 209 RKELIQGIEA-AVLTRL-NDAGIKGKVKGREKNLYSIYNKMQSKELQFQEVMDIYAFRVI 266
Query: 339 IKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDN 398
+ + ++T CY + L+K P R KDYIA PKANGY+SLH ++ +
Sbjct: 267 V----DSIDT-------CYRVLGAMHGLYKPRPGRFKDYIAIPKANGYQSLHTSL-FGPH 314
Query: 399 GKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431
G P+ EIQIRTE+MD +A G A+H YKGG
Sbjct: 315 GV--PV-EIQIRTEDMDQMADKGVAAHWAYKGG 344
Score = 170 (64.9 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 59/230 (25%), Positives = 104/230 (45%)
Query: 111 TKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNN 170
T ++VA +LA++++D E + A LL +E V+ + + +R G A L+ ++
Sbjct: 47 THPVAVARILAEMRLDHETLMAALLHDTIEDTYVTKEDLAERFGESVAELVEGVSKLDK- 105
Query: 171 VNLKLQVLDDETAAALRKFCLTY-YXXXXXXXXXXXXXXMMRHLDYLPRYQQLMISLEVM 229
LK + + A RK + MR L L ++ I+ E +
Sbjct: 106 --LKFRDKKEAQAENFRKMMMAMTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETL 163
Query: 230 KIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQC 289
+I+AP+A+ + + + ELEDL F+ +P Y + +++ K LI + +L
Sbjct: 164 EIYAPIANRLGIHNIKTELEDLGFQAYYPMRYRVLKEVVKAARGNRKELIQGIEAAVLTR 223
Query: 290 LKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVII 339
L DA + V+GR K+ YS K+ +EV D+ RVI+
Sbjct: 224 LN-DAGIKG-----KVKGREKNLYSIYNKMQSKELQFQEVMDIYAFRVIV 267
>UNIPROTKB|Q4K899 [details] [associations]
symbol:relA "GTP diphosphokinase" species:220664
"Pseudomonas protegens Pf-5" [GO:0008728 "GTP diphosphokinase
activity" evidence=ISS] [GO:0015969 "guanosine tetraphosphate
metabolic process" evidence=ISS] [GO:0034198 "cellular response to
amino acid starvation" evidence=ISS] InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00954 InterPro:IPR004095
InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271 GO:GO:0000166
GO:GO:0016301 EMBL:CP000076 GenomeReviews:CP000076_GR
Gene3D:3.10.20.30 InterPro:IPR012675 GO:GO:0034198 eggNOG:COG0317
InterPro:IPR026020 PANTHER:PTHR21262 HOGENOM:HOG000018300 KO:K00951
OMA:HRADCDQ GO:GO:0008728 GO:GO:0015969 TIGRFAMs:TIGR00691
RefSeq:YP_261534.1 ProteinModelPortal:Q4K899 STRING:Q4K899
GeneID:3478565 KEGG:pfl:PFL_4446 PATRIC:19878324
ProtClustDB:CLSK866228 BioCyc:PFLU220664:GIX8-4481-MONOMER
Uniprot:Q4K899
Length = 747
Score = 197 (74.4 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 49/129 (37%), Positives = 68/129 (52%)
Query: 302 DVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTRE 361
+ + GR K YS +K+ + G ++ DV +RV++ P R CYT
Sbjct: 257 NADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV-PEM----------RDCYTALG 305
Query: 362 IIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNG 421
I+ +LW+ +P DYIA PK NGYRSLH AV + GK ++E+QIRT M A G
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAV-IGPEGK---VLEVQIRTHAMHEEAELG 361
Query: 422 TASHAFYKG 430
+H YKG
Sbjct: 362 VCAHWKYKG 370
Score = 181 (68.8 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 63/232 (27%), Positives = 101/232 (43%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKN-NVN 172
L +A +LADL++D + + A +L + V G + + V R G L+ LR+ +
Sbjct: 69 LEIAEILADLKLDQDSLVAAVLYRGVREGQIQLPAVSQRFGPVVTKLIDGVLRMAAITAS 128
Query: 173 LKLQ---VLDDETAAA-LRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLE 227
L + VL + LRK + +R + ++ ++ E
Sbjct: 129 LSPRQSLVLGTQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADEEKRNRVARE 188
Query: 228 VMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLL 287
V I+APLAH + ++ +ELEDLSFRYL P Y + L + I QL
Sbjct: 189 VFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQIAKLLHERRLDRERFISDVMNQLQ 248
Query: 288 QCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVII 339
LK AD + GR K YS +K+ + G ++ DV +RV++
Sbjct: 249 NELKATGVNAD------ISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV 294
>TIGR_CMR|SPO_3203 [details] [associations]
symbol:SPO_3203 "guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase, putative" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0008893 "guanosine-3',5'-bis(diphosphate)
3'-diphosphatase activity" evidence=ISS] [GO:0015968 "stringent
response" evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016787
Gene3D:3.10.20.30 InterPro:IPR012675 KO:K01139 InterPro:IPR026020
PANTHER:PTHR21262 GO:GO:0015969 TIGRFAMs:TIGR00691
HOGENOM:HOG000018299 OMA:RAYFYAE RefSeq:YP_168406.1
ProteinModelPortal:Q5LNK1 GeneID:3193258 KEGG:sil:SPO3203
PATRIC:23379853 ProtClustDB:CLSK934090 Uniprot:Q5LNK1
Length = 730
Score = 195 (73.7 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 49/136 (36%), Positives = 72/136 (52%)
Query: 302 DVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTRE 361
+ V GR K YS +K+ + + ++D+ G R+I + E CY T
Sbjct: 250 EAEVFGRAKKPYSIWRKMQEKDQGFSRLSDIYGFRIIT-----------LSEEDCYRTLG 298
Query: 362 IIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNG 421
I W+ +P R KDYI++PK+NGYRS+H V D GK +E+QIRT +M +A G
Sbjct: 299 AIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRD-GKR---VEVQIRTRQMHDVAETG 354
Query: 422 TASHAFYKGGLT--NP 435
A+H Y+ G+ NP
Sbjct: 355 VAAHWSYRDGVRTQNP 370
Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 56/229 (24%), Positives = 99/229 (43%)
Query: 111 TKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNN 170
T ++VA +L + ++D I LL +E S QV + G A L+ ++
Sbjct: 67 THPVAVAAILTEQRLDDATIITALLHDTIEDTKASYGQVSELFGEEVAMLVDGVTKL--- 123
Query: 171 VNLKLQVLDDETAAALRK-FCLTYYXXXXXXXXXXXXXXMMRHLDYLPRYQQLMISLEVM 229
NL+L + + A RK F MR + + +Q + + E M
Sbjct: 124 TNLQLSSRETKQAENFRKLFMAMSKDLRVILVKLADRLHNMRTIKAMRPEKQAVKARETM 183
Query: 230 KIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQC 289
I+APLA + ++ ELEDL+FR L P + +R T + D+ ++
Sbjct: 184 DIYAPLAGRMGMQWMREELEDLAFRVLNPEGRQSI---IRRFITLQRETGDVI-HRITGD 239
Query: 290 LKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVI 338
++ + A + + V GR K YS +K+ + + ++D+ G R+I
Sbjct: 240 MRHELDKAGI--EAEVFGRAKKPYSIWRKMQEKDQGFSRLSDIYGFRII 286
>TIGR_CMR|BA_4637 [details] [associations]
symbol:BA_4637 "GTP pyrophosphokinase" species:198094
"Bacillus anthracis str. Ames" [GO:0008728 "GTP diphosphokinase
activity" evidence=ISS] [GO:0015968 "stringent response"
evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0016301
Gene3D:3.10.20.30 InterPro:IPR012675 InterPro:IPR026020
PANTHER:PTHR21262 HOGENOM:HOG000018300 KO:K00951 GO:GO:0008728
GO:GO:0015969 TIGRFAMs:TIGR00691 RefSeq:NP_846854.1
ProteinModelPortal:Q81LI2 SMR:Q81LI2 DNASU:1085523
EnsemblBacteria:EBBACT00000012515 GeneID:1085523 KEGG:ban:BA_4637
PATRIC:18786856 ProtClustDB:CLSK887674 Uniprot:Q81LI2
Length = 727
Score = 203 (76.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 58/155 (37%), Positives = 85/155 (54%)
Query: 283 KEQLLQCLKTDATLADLVEDVSVQ----GRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVI 338
+E+ L + T + + +++V++Q GR K YS +K+ + E+ D+L +RV+
Sbjct: 214 REEYLDEVMTG--IREKLDEVAIQPEISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRVV 271
Query: 339 IKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDN 398
+ N + + CY II + WK MP R KDYIA PKAN Y+SLH V +
Sbjct: 272 V----NSI-------KDCYAVLGIIHTCWKPMPGRFKDYIAMPKANLYQSLHTTV-IGPK 319
Query: 399 GKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGGLT 433
G PL E+QIRT+EM +A G A+H YK G T
Sbjct: 320 GD--PL-EVQIRTKEMHEIAEFGIAAHWAYKEGKT 351
Score = 187 (70.9 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 58/227 (25%), Positives = 104/227 (45%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNL 173
+ VA +L DL MD +SAG L VVE ++++ + A L+ ++ +
Sbjct: 55 IQVAGVLVDLHMDPATVSAGFLHDVVEDTEITLEDIEREFNKEIAMLVDGVTKLGK---I 111
Query: 174 KLQVLDDETAAALRK-FCLTYYXXXXXXXXXXXXXXMMRHLDYLPRYQQLMISLEVMKIH 232
K + + + A RK F MR L +LP+ +Q I+ E ++I
Sbjct: 112 KYKSHEQQQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRIANETLEIF 171
Query: 233 APLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKT 292
APLAH + + + +ELED S RYL P Y + ++ + +D +++ ++
Sbjct: 172 APLAHRLGISTIKWELEDTSLRYLNPQQYYRIVNLMKRKRAEREEYLD----EVMTGIRE 227
Query: 293 DATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVII 339
L ++ + GR K YS +K+ + E+ D+L +RV++
Sbjct: 228 K--LDEVAIQPEISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRVVV 272
Score = 37 (18.1 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 530 QKQVEFMRNLEDRDDEYRTMLDEKLQ 555
+K++E+ ++E + R +L+E LQ
Sbjct: 645 EKEIEYNVDIEISGYDRRGLLNEVLQ 670
>UNIPROTKB|P0AG24 [details] [associations]
symbol:spoT "guanosine 3'-diphosphate 5'-triphosphate
3'-diphosphatase [multifunctional]" species:83333 "Escherichia coli
K-12" [GO:0046872 "metal ion binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IEA] [GO:0015970
"guanosine tetraphosphate biosynthetic process" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0015969 "guanosine tetraphosphate metabolic
process" evidence=IEA;IMP] [GO:0008728 "GTP diphosphokinase
activity" evidence=IEA] [GO:0008893
"guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity"
evidence=IEA;IDA] [GO:0042594 "response to starvation"
evidence=IMP] [GO:0015949 "nucleobase-containing small molecule
interconversion" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR006674 InterPro:IPR007685 Pfam:PF01966 Pfam:PF04607
SMART:SM00471 SMART:SM00954 UniPathway:UPA00908 InterPro:IPR004095
InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0016301 EMBL:L10328
Gene3D:3.10.20.30 InterPro:IPR012675 GO:GO:0015949 GO:GO:0008081
GO:GO:0015970 eggNOG:COG0317 KO:K01139 GO:GO:0008893
InterPro:IPR026020 PANTHER:PTHR21262 GO:GO:0008728
TIGRFAMs:TIGR00691 EMBL:M24503 PIR:B30374 RefSeq:NP_418107.1
RefSeq:YP_491784.1 ProteinModelPortal:P0AG24 SMR:P0AG24
DIP:DIP-29378N IntAct:P0AG24 MINT:MINT-1219858 PRIDE:P0AG24
EnsemblBacteria:EBESCT00000003824 EnsemblBacteria:EBESCT00000015853
GeneID:12930367 GeneID:948159 KEGG:ecj:Y75_p3524 KEGG:eco:b3650
PATRIC:32122787 EchoBASE:EB0959 EcoGene:EG10966
HOGENOM:HOG000018299 OMA:RAYFYAE ProtClustDB:PRK11092
BioCyc:EcoCyc:SPOT-MONOMER BioCyc:ECOL316407:JW3625-MONOMER
BioCyc:MetaCyc:SPOT-MONOMER Genevestigator:P0AG24 Uniprot:P0AG24
Length = 702
Score = 194 (73.4 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 58/149 (38%), Positives = 80/149 (53%)
Query: 283 KEQLLQCL-KTDATLADLVEDVSVQGRYKSRYSTM-KKLLKDGRIPEEVNDVLGLRVIIK 340
KE + + L + + L + V GR K YS K +LK+ R + D+ RVI
Sbjct: 210 KEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRF-HSIMDIYAFRVI-- 266
Query: 341 PSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGK 400
VN S+ CY + SL+K P R KDYIA PKANGY+SLH ++ + +G
Sbjct: 267 -----VNDSDT----CYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSM-IGPHGV 316
Query: 401 TRPLMEIQIRTEEMDMLAVNGTASHAFYK 429
P+ E+QIRTE+MD +A G A+H YK
Sbjct: 317 --PV-EVQIRTEDMDQMAEMGVAAHWAYK 342
Score = 174 (66.3 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 59/234 (25%), Positives = 105/234 (44%)
Query: 111 TKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNN 170
T ++VA +LA++++D E + A LL V+E + Q + G A L+ ++
Sbjct: 47 THPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDK- 105
Query: 171 VNLKLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVM 229
LK + + A RK + MR L L ++ I+ E +
Sbjct: 106 --LKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETL 163
Query: 230 KIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQC 289
+I++PLAH + +++ ELE+L F L+P Y + +++ K +I +++L
Sbjct: 164 EIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMI----QKILS- 218
Query: 290 LKTDATLADLVEDVSVQGRYKSRYSTM-KKLLKDGRIPEEVNDVLGLRVIIKPS 342
+ + L + V GR K YS K +LK+ R + D+ RVI+ S
Sbjct: 219 -EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRF-HSIMDIYAFRVIVNDS 270
>UNIPROTKB|P66014 [details] [associations]
symbol:relA "Bifunctional (p)ppGpp synthase/hydrolase relA"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0008728 "GTP diphosphokinase activity" evidence=IDA]
[GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
activity" evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0015968 "stringent response" evidence=IMP] [GO:0030145
"manganese ion binding" evidence=IDA] InterPro:IPR003607
InterPro:IPR004811 InterPro:IPR007685 Pfam:PF04607 SMART:SM00471
SMART:SM00954 UniPathway:UPA00908 GO:GO:0005525 InterPro:IPR004095
InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 GO:GO:0009405 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842580
GO:GO:0016301 GO:GO:0030145 Gene3D:3.10.20.30 InterPro:IPR012675
GO:GO:0015968 GO:GO:0015970 eggNOG:COG0317 GO:GO:0008893
InterPro:IPR026020 PANTHER:PTHR21262 KO:K00951 GO:GO:0008728
TIGRFAMs:TIGR00691 PIR:F70725 RefSeq:NP_217099.1 RefSeq:NP_337159.1
RefSeq:YP_006516024.1 ProteinModelPortal:P66014 SMR:P66014
DNASU:925657 EnsemblBacteria:EBMYCT00000003206
EnsemblBacteria:EBMYCT00000071175 GeneID:13319303 GeneID:887888
GeneID:925657 KEGG:mtc:MT2660 KEGG:mtu:Rv2583c KEGG:mtv:RVBD_2583c
PATRIC:18127594 TubercuList:Rv2583c HOGENOM:HOG000018301
ProtClustDB:CLSK791939 Uniprot:P66014
Length = 738
Score = 191 (72.3 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 53/156 (33%), Positives = 83/156 (53%)
Query: 274 GSKPLIDIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVL 333
G P D Y ++ + T + + +V+GR K +S +K++ GR ++++D++
Sbjct: 210 GRAPSRDTYLAKVRAEIVNTLTASKI--KATVEGRPKHYWSIYQKMIVKGRDFDDIHDLV 267
Query: 334 GLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAV 393
G+R++ E+ R CY ++ SLW+ M R KDYIA+P+ Y+SLH V
Sbjct: 268 GVRILC---------DEI--RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTV 316
Query: 394 DVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYK 429
V GK PL E+QIRT +M A G A+H YK
Sbjct: 317 -VGPEGK--PL-EVQIRTRDMHRTAEYGIAAHWRYK 348
Score = 188 (71.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 63/230 (27%), Positives = 112/230 (48%)
Query: 111 TKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNN 170
T L+VA +LA+L MD + A LL VE G +++ + + G HL+ + + +
Sbjct: 55 THPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEALTEEFGEEVGHLV-DGVTKLDR 113
Query: 171 VNLKLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM--MRHLDYLPRYQQLMISLEV 228
V L + ET +RK +T + MR + +LP +Q + E
Sbjct: 114 VVLG-SAAEGET---IRKM-ITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARET 168
Query: 229 MKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQ 288
+++ APLAH + + +ELEDLSF L P Y + +R G P D Y ++
Sbjct: 169 LEVIAPLAHRLGMASVKWELEDLSFAILHPKKY---EEIVRL-VAGRAPSRDTYLAKVRA 224
Query: 289 CLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVI 338
+ T + + +V+GR K +S +K++ GR ++++D++G+R++
Sbjct: 225 EIVNTLTASKI--KATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRIL 272
Score = 40 (19.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 363 IQSLWKEMPHRTKDY-IA---RPKA----NGYRSLHMAVDVSDNGKTRPLMEIQ 408
+Q ++M HRT +Y IA R K NG H A ++ D R L++ Q
Sbjct: 326 VQIRTRDM-HRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQ 378
>UNIPROTKB|Q9KNM2 [details] [associations]
symbol:spoT "Guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase" species:243277 "Vibrio cholerae O1 biovar
El Tor str. N16961" [GO:0009267 "cellular response to starvation"
evidence=ISS] InterPro:IPR003607 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF04607 SMART:SM00471 SMART:SM00954
UniPathway:UPA00908 InterPro:IPR004095 InterPro:IPR012676
Pfam:PF02824 SUPFAM:SSF81271 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009267 Gene3D:3.10.20.30
InterPro:IPR012675 GO:GO:0015970 HSSP:Q54089 eggNOG:COG0317
KO:K01139 GO:GO:0008893 InterPro:IPR026020 PANTHER:PTHR21262
TIGRFAMs:TIGR00691 OMA:RAYFYAE ProtClustDB:PRK11092 PIR:B82044
RefSeq:NP_232337.1 ProteinModelPortal:Q9KNM2 DNASU:2615538
GeneID:2615538 KEGG:vch:VC2710 PATRIC:20084438 Uniprot:Q9KNM2
Length = 705
Score = 189 (71.6 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 283 KEQLLQCLKTD--ATLADLVEDVSVQGRYKSRYSTMKKL-LKDGRIPEEVNDVLGLRVII 339
+++++Q + ++ L ++ V GR K+ +S K+ K+ R + D+ R++
Sbjct: 209 RKEMIQRIHSEIEGRLQEVGLPARVVGREKNLFSIYNKMKTKEQRF-HTIMDIYAFRIV- 266
Query: 340 KPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNG 399
V+T++ CY + SL+K P R KDYIA PKANGY+SLH ++ V +G
Sbjct: 267 ------VDTADT----CYRVLGQVHSLYKPRPARMKDYIAVPKANGYQSLHTSM-VGPHG 315
Query: 400 KTRPLMEIQIRTEEMDMLAVNGTASHAFYK-----GGLTNPEEAKR 440
P+ E+QIRTE+MD +A G A+H YK GG T +A+R
Sbjct: 316 V--PV-EVQIRTEDMDQMADKGVAAHWSYKANSERGGTTAQIKAQR 358
Score = 155 (59.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 54/228 (23%), Positives = 101/228 (44%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNL 173
++VA +LA++++D E + A LL V+E V+ + + G A L+ ++ L
Sbjct: 50 VAVARILAEMRLDLETLQAALLHDVIEDCDVTKEDLDAHFGSSVAELVDGVSKLDK---L 106
Query: 174 KLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVMKIH 232
K + + A RK L MR L L ++ I+ E ++I+
Sbjct: 107 KFRDRKEAQAENFRKMVLAMVQDIRVILIKLADRTPNMRTLGALRPDKKRRIARETLEIY 166
Query: 233 APLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKT 292
APLAH + + + ELE+L F L+P Y + +++ K +I ++
Sbjct: 167 APLAHRLGIHNIKTELEELGFEALYPNRYRVLKEVVKAARGNRKEMIQRIHSEI------ 220
Query: 293 DATLADLVEDVSVQGRYKSRYSTMKKL-LKDGRIPEEVNDVLGLRVII 339
+ L ++ V GR K+ +S K+ K+ R + D+ R+++
Sbjct: 221 EGRLQEVGLPARVVGREKNLFSIYNKMKTKEQRF-HTIMDIYAFRIVV 267
>TIGR_CMR|VC_2710 [details] [associations]
symbol:VC_2710 "guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase" species:686 "Vibrio cholerae O1 biovar El
Tor" [GO:0009267 "cellular response to starvation" evidence=ISS]
InterPro:IPR003607 InterPro:IPR004811 InterPro:IPR007685
Pfam:PF04607 SMART:SM00471 SMART:SM00954 UniPathway:UPA00908
InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009267
Gene3D:3.10.20.30 InterPro:IPR012675 GO:GO:0015970 HSSP:Q54089
eggNOG:COG0317 KO:K01139 GO:GO:0008893 InterPro:IPR026020
PANTHER:PTHR21262 TIGRFAMs:TIGR00691 OMA:RAYFYAE
ProtClustDB:PRK11092 PIR:B82044 RefSeq:NP_232337.1
ProteinModelPortal:Q9KNM2 DNASU:2615538 GeneID:2615538
KEGG:vch:VC2710 PATRIC:20084438 Uniprot:Q9KNM2
Length = 705
Score = 189 (71.6 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 283 KEQLLQCLKTD--ATLADLVEDVSVQGRYKSRYSTMKKL-LKDGRIPEEVNDVLGLRVII 339
+++++Q + ++ L ++ V GR K+ +S K+ K+ R + D+ R++
Sbjct: 209 RKEMIQRIHSEIEGRLQEVGLPARVVGREKNLFSIYNKMKTKEQRF-HTIMDIYAFRIV- 266
Query: 340 KPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNG 399
V+T++ CY + SL+K P R KDYIA PKANGY+SLH ++ V +G
Sbjct: 267 ------VDTADT----CYRVLGQVHSLYKPRPARMKDYIAVPKANGYQSLHTSM-VGPHG 315
Query: 400 KTRPLMEIQIRTEEMDMLAVNGTASHAFYK-----GGLTNPEEAKR 440
P+ E+QIRTE+MD +A G A+H YK GG T +A+R
Sbjct: 316 V--PV-EVQIRTEDMDQMADKGVAAHWSYKANSERGGTTAQIKAQR 358
Score = 155 (59.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 54/228 (23%), Positives = 101/228 (44%)
Query: 114 LSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNL 173
++VA +LA++++D E + A LL V+E V+ + + G A L+ ++ L
Sbjct: 50 VAVARILAEMRLDLETLQAALLHDVIEDCDVTKEDLDAHFGSSVAELVDGVSKLDK---L 106
Query: 174 KLQVLDDETAAALRKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVMKIH 232
K + + A RK L MR L L ++ I+ E ++I+
Sbjct: 107 KFRDRKEAQAENFRKMVLAMVQDIRVILIKLADRTPNMRTLGALRPDKKRRIARETLEIY 166
Query: 233 APLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKT 292
APLAH + + + ELE+L F L+P Y + +++ K +I ++
Sbjct: 167 APLAHRLGIHNIKTELEELGFEALYPNRYRVLKEVVKAARGNRKEMIQRIHSEI------ 220
Query: 293 DATLADLVEDVSVQGRYKSRYSTMKKL-LKDGRIPEEVNDVLGLRVII 339
+ L ++ V GR K+ +S K+ K+ R + D+ R+++
Sbjct: 221 EGRLQEVGLPARVVGREKNLFSIYNKMKTKEQRF-HTIMDIYAFRIVV 267
>TIGR_CMR|SO_3455 [details] [associations]
symbol:SO_3455 "GTP pyrophosphokinase" species:211586
"Shewanella oneidensis MR-1" [GO:0008728 "GTP diphosphokinase
activity" evidence=ISS] [GO:0009267 "cellular response to
starvation" evidence=ISS] InterPro:IPR004811 InterPro:IPR007685
Pfam:PF04607 SMART:SM00954 InterPro:IPR004095 InterPro:IPR012676
Pfam:PF02824 SUPFAM:SSF81271 GO:GO:0000166 GO:GO:0016301
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.10.20.30
InterPro:IPR012675 InterPro:IPR026020 PANTHER:PTHR21262
HOGENOM:HOG000018300 KO:K00951 OMA:HRADCDQ GO:GO:0008728
GO:GO:0015969 TIGRFAMs:TIGR00691 RefSeq:NP_719004.1
ProteinModelPortal:Q8EBQ4 GeneID:1171131 KEGG:son:SO_3455
PATRIC:23526606 ProtClustDB:CLSK907176 Uniprot:Q8EBQ4
Length = 735
Score = 177 (67.4 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 57/176 (32%), Positives = 88/176 (50%)
Query: 259 FSYLFVDTWLR-SHETGSKPLI-DIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTM 316
F YL DT+ + + K L +++ E ++ L+ D + V GR K YS
Sbjct: 202 FRYLHPDTYKEIAKQLDGKRLDREVFIENFVEQLQQRLD-EDHIR-AKVYGRPKHIYSIW 259
Query: 317 KKLLKDGRIP-EEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTK 375
+K+ K + +E+ DV +R++ T + + CY ++ +LW +P
Sbjct: 260 RKM-KGKHLKFDELFDVRAVRIV---------TERLQD--CYGALGVVHTLWHHIPREFD 307
Query: 376 DYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431
DY+A PK NGY+S+H V V GKT +EIQIRT++M A G A+H YK G
Sbjct: 308 DYVANPKPNGYQSIHTVV-VGPEGKT---VEIQIRTQDMHEDAELGVAAHWKYKEG 359
Score = 167 (63.8 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 60/226 (26%), Positives = 105/226 (46%)
Query: 119 LLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVN-LKLQV 177
+LA L MD E + A +L V ++G ++ + ++++ G A L+ S+ N + LK+
Sbjct: 64 ILAPLNMDIETLQAAILFVVFDAGLLNEEAIKEKFGEPLARLV-ASVVTMNAIGALKINP 122
Query: 178 LDDETAAAL---RKFCLTYYXXXXXXXXXXXXXX-MMRHLDYLPRYQQLMISLEVMKIHA 233
T + R+ L ++R + +++++ E+ I+A
Sbjct: 123 NSRSTEPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYA 182
Query: 234 PLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTD 293
PLA+ + L +ELED+SFRYL P +Y + L + I+ + EQL Q L D
Sbjct: 183 PLANRLGIGQLKWELEDISFRYLHPDTYKEIAKQLDGKRLDREVFIENFVEQLQQRLDED 242
Query: 294 ATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIP-EEVNDVLGLRVI 338
A V GR K YS +K+ K + +E+ DV +R++
Sbjct: 243 HIRA------KVYGRPKHIYSIWRKM-KGKHLKFDELFDVRAVRIV 281
>UNIPROTKB|Q9S3S3 [details] [associations]
symbol:relA "PpGpp synthetase I" species:666 "Vibrio
cholerae" [GO:0009267 "cellular response to starvation"
evidence=ISS] InterPro:IPR004811 InterPro:IPR007685 Pfam:PF04607
SMART:SM00954 InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824
SUPFAM:SSF81271 GO:GO:0000166 GenomeReviews:AE003852_GR
GO:GO:0009267 Gene3D:3.10.20.30 InterPro:IPR012675
InterPro:IPR026020 PANTHER:PTHR21262 GO:GO:0015969
TIGRFAMs:TIGR00691 EMBL:AF175295 PIR:H82074
ProteinModelPortal:Q9S3S3 DNASU:2612993 PATRIC:20083923
ProtClustDB:CLSK874804 Uniprot:Q9S3S3
Length = 738
Score = 175 (66.7 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 55/177 (31%), Positives = 89/177 (50%)
Query: 257 FPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTD--ATLADLVEDVSVQGRYKSRYS 314
+ F Y DT+ + + S+ I +EQ ++ +D A + + V GR K YS
Sbjct: 200 YAFRYQQPDTYKQIAKQLSERRI--VREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYS 257
Query: 315 TMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRT 374
+K+ K +E+ DV +R+I + L + CY I+ + +K +P+
Sbjct: 258 IWRKMQKKSLAFDELFDVRAVRII---ADKLQD--------CYAALGIVHTKYKHLPNEF 306
Query: 375 KDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431
DY+A PK NGY+S+H + + GKT +EIQIRT++M + G A+H YK G
Sbjct: 307 DDYVANPKPNGYQSIHTVI-LGPEGKT---IEIQIRTKQMHEESELGVAAHWKYKEG 359
Score = 124 (48.7 bits), Expect = 0.00030, P = 0.00030
Identities = 54/228 (23%), Positives = 94/228 (41%)
Query: 119 LLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLH--ESLRVKNNVNLKLQ 176
+L L MD + A LL + SG + + + + G L+H E + +N+ +
Sbjct: 64 ILITLSMDRPTLVAALLFPIATSGVLDNESLEEGYGREVVKLIHGVEEMAAIGQLNVTMH 123
Query: 177 VLDDETAAAL---RKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVMKIH 232
E +A + R+ L +R + P + + + E I+
Sbjct: 124 --GSEASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRVAAKECANIY 181
Query: 233 APLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKT 292
APLA+ + L +E+ED +FRY P +Y + L I +EQ ++ +
Sbjct: 182 APLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSERR--------IVREQYIRDFVS 233
Query: 293 D--ATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVI 338
D A + + V GR K YS +K+ K +E+ DV +R+I
Sbjct: 234 DLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII 281
>TIGR_CMR|VC_2451 [details] [associations]
symbol:VC_2451 "GTP pyrophosphokinase" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0009267 "cellular response to
starvation" evidence=ISS] InterPro:IPR004811 InterPro:IPR007685
Pfam:PF04607 SMART:SM00954 InterPro:IPR004095 InterPro:IPR012676
Pfam:PF02824 SUPFAM:SSF81271 GO:GO:0000166
GenomeReviews:AE003852_GR GO:GO:0009267 Gene3D:3.10.20.30
InterPro:IPR012675 InterPro:IPR026020 PANTHER:PTHR21262
GO:GO:0015969 TIGRFAMs:TIGR00691 EMBL:AF175295 PIR:H82074
ProteinModelPortal:Q9S3S3 DNASU:2612993 PATRIC:20083923
ProtClustDB:CLSK874804 Uniprot:Q9S3S3
Length = 738
Score = 175 (66.7 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 55/177 (31%), Positives = 89/177 (50%)
Query: 257 FPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTD--ATLADLVEDVSVQGRYKSRYS 314
+ F Y DT+ + + S+ I +EQ ++ +D A + + V GR K YS
Sbjct: 200 YAFRYQQPDTYKQIAKQLSERRI--VREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYS 257
Query: 315 TMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRT 374
+K+ K +E+ DV +R+I + L + CY I+ + +K +P+
Sbjct: 258 IWRKMQKKSLAFDELFDVRAVRII---ADKLQD--------CYAALGIVHTKYKHLPNEF 306
Query: 375 KDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431
DY+A PK NGY+S+H + + GKT +EIQIRT++M + G A+H YK G
Sbjct: 307 DDYVANPKPNGYQSIHTVI-LGPEGKT---IEIQIRTKQMHEESELGVAAHWKYKEG 359
Score = 124 (48.7 bits), Expect = 0.00030, P = 0.00030
Identities = 54/228 (23%), Positives = 94/228 (41%)
Query: 119 LLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLH--ESLRVKNNVNLKLQ 176
+L L MD + A LL + SG + + + + G L+H E + +N+ +
Sbjct: 64 ILITLSMDRPTLVAALLFPIATSGVLDNESLEEGYGREVVKLIHGVEEMAAIGQLNVTMH 123
Query: 177 VLDDETAAAL---RKFCLTYYXXXXXXXXXXXXXXM-MRHLDYLPRYQQLMISLEVMKIH 232
E +A + R+ L +R + P + + + E I+
Sbjct: 124 --GSEASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRVAAKECANIY 181
Query: 233 APLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKT 292
APLA+ + L +E+ED +FRY P +Y + L I +EQ ++ +
Sbjct: 182 APLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSERR--------IVREQYIRDFVS 233
Query: 293 D--ATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVI 338
D A + + V GR K YS +K+ K +E+ DV +R+I
Sbjct: 234 DLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII 281
>UNIPROTKB|P0AG20 [details] [associations]
symbol:relA "GDP pyrophosphokinase / GTP pyrophosphokinase"
species:83333 "Escherichia coli K-12" [GO:0016597 "amino acid
binding" evidence=IEA] [GO:0015970 "guanosine tetraphosphate
biosynthetic process" evidence=IEA] [GO:0016310 "phosphorylation"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0015969 "guanosine tetraphosphate metabolic process"
evidence=IEA;IMP] [GO:0008728 "GTP diphosphokinase activity"
evidence=IEA;IDA] [GO:0015949 "nucleobase-containing small molecule
interconversion" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IPI] InterPro:IPR002912 InterPro:IPR004811
InterPro:IPR007685 Pfam:PF01842 Pfam:PF04607 SMART:SM00954
UniPathway:UPA00908 GO:GO:0005525 InterPro:IPR004095
InterPro:IPR012676 Pfam:PF02824 SUPFAM:SSF81271 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0016597 GO:GO:0016301
Gene3D:3.10.20.30 InterPro:IPR012675 GO:GO:0015949 EMBL:U29580
GO:GO:0015970 EMBL:J04039 eggNOG:COG0317 InterPro:IPR026020
PANTHER:PTHR21262 PIR:D65060 RefSeq:NP_417264.1 RefSeq:YP_490992.1
ProteinModelPortal:P0AG20 SMR:P0AG20 IntAct:P0AG20 PRIDE:P0AG20
EnsemblBacteria:EBESCT00000002092 EnsemblBacteria:EBESCT00000002093
EnsemblBacteria:EBESCT00000014610 GeneID:12930232 GeneID:947244
KEGG:ecj:Y75_p2721 KEGG:eco:b2784 PATRIC:32120984 EchoBASE:EB0828
EcoGene:EG10835 HOGENOM:HOG000018300 KO:K00951 OMA:HRADCDQ
ProtClustDB:PRK10872 BioCyc:EcoCyc:RELA-MONOMER
BioCyc:ECOL316407:JW2755-MONOMER BioCyc:MetaCyc:RELA-MONOMER
ChEMBL:CHEMBL1163114 Genevestigator:P0AG20 GO:GO:0008728
GO:GO:0015969 TIGRFAMs:TIGR00691 Uniprot:P0AG20
Length = 744
Score = 166 (63.5 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 49/150 (32%), Positives = 77/150 (51%)
Query: 282 YKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKP 341
Y E+ + L+ + A+ V+ V GR K YS +K+ K +E+ DV +R++ +
Sbjct: 228 YIEEFVGHLRAEMK-AEGVK-AEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAER 285
Query: 342 SSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKT 401
+ CY I+ + ++ +P DY+A PK NGY+S+H V + GKT
Sbjct: 286 LQD-----------CYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVV-LGPGGKT 333
Query: 402 RPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431
+EIQIRT++M A G A+H YK G
Sbjct: 334 ---VEIQIRTKQMHEDAELGVAAHWKYKEG 360
Score = 159 (61.0 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 55/231 (23%), Positives = 98/231 (42%)
Query: 112 KALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNV 171
+ + + +L+ L MD + + A LL + ++ VS +R+ +G +L+H +
Sbjct: 58 RGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIR 117
Query: 172 NLKLQVLDD---ETAAALRKFCLTYYXXXX-XXXXXXXXXXMMRHLDYLPRYQQLMISLE 227
LK D E +R+ L +R + P ++++ + E
Sbjct: 118 QLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKE 177
Query: 228 VMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLL 287
I+APLA+ + L +ELED FRYL P Y + L + I+ + L
Sbjct: 178 CTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLR 237
Query: 288 QCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVI 338
+K + A+ V GR K YS +K+ K +E+ DV +R++
Sbjct: 238 AEMKAEGVKAE------VYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV 282
>TIGR_CMR|CPS_4115 [details] [associations]
symbol:CPS_4115 "GTP pyrophosphokinase" species:167879
"Colwellia psychrerythraea 34H" [GO:0008728 "GTP diphosphokinase
activity" evidence=ISS] [GO:0015968 "stringent response"
evidence=ISS] InterPro:IPR004811 InterPro:IPR007685 Pfam:PF04607
SMART:SM00954 InterPro:IPR004095 InterPro:IPR012676 Pfam:PF02824
SUPFAM:SSF81271 GO:GO:0000166 GO:GO:0016301 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:3.10.20.30 InterPro:IPR012675
eggNOG:COG0317 InterPro:IPR026020 PANTHER:PTHR21262
HOGENOM:HOG000018300 KO:K00951 OMA:HRADCDQ GO:GO:0008728
GO:GO:0015969 TIGRFAMs:TIGR00691 RefSeq:YP_270770.1
ProteinModelPortal:Q47WQ2 STRING:Q47WQ2 DNASU:3518529
GeneID:3518529 KEGG:cps:CPS_4115 PATRIC:21471093
BioCyc:CPSY167879:GI48-4128-MONOMER Uniprot:Q47WQ2
Length = 737
Score = 166 (63.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 43/127 (33%), Positives = 69/127 (54%)
Query: 305 VQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQ 364
V GR K +S KK+ + +++ DV +RV+++ + CY+ I+
Sbjct: 249 VYGRPKHIFSIWKKMQQKSLDFDQLFDVRAVRVVVEKVQD-----------CYSALGIVH 297
Query: 365 SLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTAS 424
+ W+ + DY+A PKANGY+S+H V + GK+ +E+QIRT++MD A G A+
Sbjct: 298 TEWQHIAKEFSDYVATPKANGYQSIHTVV-LGPEGKS---VEVQIRTKQMDDDAELGVAA 353
Query: 425 HAFYKGG 431
H YK G
Sbjct: 354 HWRYKEG 360
Score = 43 (20.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 8/40 (20%), Positives = 24/40 (60%)
Query: 112 KALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRD 151
K++ + +L+ L +DA+ + A + ++ + + I+ V++
Sbjct: 56 KSMEMVEILSGLNLDADSLVAAFISPLLANDIIEIEFVKE 95
>UNIPROTKB|Q81LP1 [details] [associations]
symbol:BAS4242 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR007685 Pfam:PF04607
SMART:SM00954 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0015969 HOGENOM:HOG000263234
OMA:DYSPIEH RefSeq:NP_846794.1 RefSeq:YP_021217.1
RefSeq:YP_030490.1 ProteinModelPortal:Q81LP1 DNASU:1088595
EnsemblBacteria:EBBACT00000008819 EnsemblBacteria:EBBACT00000015923
EnsemblBacteria:EBBACT00000023081 GeneID:1088595 GeneID:2817609
GeneID:2852961 KEGG:ban:BA_4572 KEGG:bar:GBAA_4572 KEGG:bat:BAS4242
ProtClustDB:CLSK917361 BioCyc:BANT260799:GJAJ-4298-MONOMER
BioCyc:BANT261594:GJ7F-4446-MONOMER Uniprot:Q81LP1
Length = 216
Score = 121 (47.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 47/150 (31%), Positives = 68/150 (45%)
Query: 297 ADLVEDVS----VQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVG 352
A +ED + ++ R K S +KKL + +P N L+ II ++
Sbjct: 36 AQFLEDYNPFEHIKTRLKQPESIIKKLERKNLLPTVENAQTHLQDIIGIRITCCFVEDI- 94
Query: 353 ERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVD--VSDNGKTRPLM-EIQI 409
Y + +IQ KDYIA PK NGY+SLHM + +S N T+ + EIQ+
Sbjct: 95 ----YHLKNVIQKREDMEIIEVKDYIANPKKNGYKSLHMIIKYPLSLNSGTKEVFAEIQL 150
Query: 410 RTEEMDMLAVNGTASHAFYKGGLTNPEEAK 439
RT MD A + Y+G + PE K
Sbjct: 151 RTLAMDFWASLEHKLYYKYEGKI--PEYLK 178
>TIGR_CMR|BA_4572 [details] [associations]
symbol:BA_4572 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR007685 Pfam:PF04607 SMART:SM00954 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0015969
HOGENOM:HOG000263234 OMA:DYSPIEH RefSeq:NP_846794.1
RefSeq:YP_021217.1 RefSeq:YP_030490.1 ProteinModelPortal:Q81LP1
DNASU:1088595 EnsemblBacteria:EBBACT00000008819
EnsemblBacteria:EBBACT00000015923 EnsemblBacteria:EBBACT00000023081
GeneID:1088595 GeneID:2817609 GeneID:2852961 KEGG:ban:BA_4572
KEGG:bar:GBAA_4572 KEGG:bat:BAS4242 ProtClustDB:CLSK917361
BioCyc:BANT260799:GJAJ-4298-MONOMER
BioCyc:BANT261594:GJ7F-4446-MONOMER Uniprot:Q81LP1
Length = 216
Score = 121 (47.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 47/150 (31%), Positives = 68/150 (45%)
Query: 297 ADLVEDVS----VQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVG 352
A +ED + ++ R K S +KKL + +P N L+ II ++
Sbjct: 36 AQFLEDYNPFEHIKTRLKQPESIIKKLERKNLLPTVENAQTHLQDIIGIRITCCFVEDI- 94
Query: 353 ERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVD--VSDNGKTRPLM-EIQI 409
Y + +IQ KDYIA PK NGY+SLHM + +S N T+ + EIQ+
Sbjct: 95 ----YHLKNVIQKREDMEIIEVKDYIANPKKNGYKSLHMIIKYPLSLNSGTKEVFAEIQL 150
Query: 410 RTEEMDMLAVNGTASHAFYKGGLTNPEEAK 439
RT MD A + Y+G + PE K
Sbjct: 151 RTLAMDFWASLEHKLYYKYEGKI--PEYLK 178
>UNIPROTKB|Q722B6 [details] [associations]
symbol:LMOf2365_0818 "Putative uncharacterized protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR007685 Pfam:PF04607 SMART:SM00954
EMBL:AE017262 GenomeReviews:AE017262_GR InterPro:IPR026020
PANTHER:PTHR21262 GO:GO:0015969 eggNOG:COG2357 HOGENOM:HOG000263234
RefSeq:YP_013421.1 ProteinModelPortal:Q722B6 STRING:Q722B6
GeneID:2797304 KEGG:lmf:LMOf2365_0818 PATRIC:20322852 OMA:DYSPIEH
ProtClustDB:CLSK888112 Uniprot:Q722B6
Length = 212
Score = 110 (43.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 26/59 (44%), Positives = 32/59 (54%)
Query: 373 RTKDYIARPKANGYRSLHMAVDVS---DNGKTRPLMEIQIRTEEMDMLAVNGTASHAFY 428
R KDY+ PK NGYRSLH+ +V N + +EIQIRT MD A + H Y
Sbjct: 112 RVKDYVTNPKPNGYRSLHLLCEVPVFLTNRSEKMTVEIQIRTVAMDFWA---SLEHKIY 167
Score = 40 (19.1 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 534 EFMRNLEDRDDEYR 547
E M+NL D+ D+Y+
Sbjct: 194 EKMKNLNDQIDQYK 207
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 576 497 0.00084 119 3 11 22 0.38 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 609 (65 KB)
Total size of DFA: 258 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.79u 0.13s 36.92t Elapsed: 00:00:02
Total cpu time: 36.80u 0.13s 36.93t Elapsed: 00:00:02
Start: Tue May 21 07:19:07 2013 End: Tue May 21 07:19:09 2013