Query 008155
Match_columns 576
No_of_seqs 428 out of 3300
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 20:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1.4E-98 3E-103 825.9 34.2 361 66-451 7-370 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 2.7E-97 6E-102 829.0 34.4 353 68-446 17-382 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 1.2E-93 2.7E-98 802.9 35.9 355 67-446 3-364 (702)
4 KOG1157 Predicted guanosine po 100.0 1.9E-94 4.1E-99 727.4 24.5 495 31-553 19-518 (543)
5 TIGR00691 spoT_relA (p)ppGpp s 100.0 4.4E-89 9.6E-94 769.1 31.7 333 89-446 1-338 (683)
6 PF13328 HD_4: HD domain; PDB: 100.0 2.7E-38 5.8E-43 295.9 1.9 151 89-242 1-153 (153)
7 COG2357 PpGpp synthetase catal 100.0 8.9E-29 1.9E-33 238.9 12.5 139 304-457 54-203 (231)
8 cd05399 NT_Rel-Spo_like Nucleo 99.9 1.5E-27 3.2E-32 216.9 12.1 124 282-420 3-129 (129)
9 PF04607 RelA_SpoT: Region fou 99.9 8.8E-28 1.9E-32 213.9 4.6 111 307-431 1-114 (115)
10 KOG0027 Calmodulin and related 99.4 6.4E-13 1.4E-17 124.1 10.6 104 470-575 8-119 (151)
11 COG5126 FRQ1 Ca2+-binding prot 99.4 1.2E-12 2.7E-17 121.7 10.4 100 470-575 20-126 (160)
12 KOG0028 Ca2+-binding protein ( 99.2 1.4E-10 3E-15 106.0 9.9 103 468-575 31-140 (172)
13 KOG0030 Myosin essential light 99.0 9.6E-10 2.1E-14 98.2 8.1 103 470-575 11-122 (152)
14 PTZ00183 centrin; Provisional 99.0 2.4E-09 5.1E-14 99.6 11.0 100 470-574 17-123 (158)
15 PTZ00184 calmodulin; Provision 98.9 6.5E-09 1.4E-13 95.3 10.3 100 470-574 11-117 (149)
16 KOG0037 Ca2+-binding protein, 98.8 1E-08 2.2E-13 98.7 9.0 95 470-576 57-159 (221)
17 KOG0031 Myosin regulatory ligh 98.8 1.6E-08 3.5E-13 92.0 9.7 97 470-575 32-135 (171)
18 PF13499 EF-hand_7: EF-hand do 98.8 5.5E-09 1.2E-13 83.1 5.9 60 471-530 1-66 (66)
19 cd05022 S-100A13 S-100A13: S-1 98.8 7.9E-09 1.7E-13 87.7 6.4 65 470-534 8-77 (89)
20 COG5126 FRQ1 Ca2+-binding prot 98.8 1E-08 2.2E-13 95.6 7.5 64 468-531 90-155 (160)
21 KOG0037 Ca2+-binding protein, 98.8 1.8E-08 4E-13 96.9 9.3 104 450-565 94-209 (221)
22 cd05027 S-100B S-100B: S-100B 98.7 3.9E-08 8.4E-13 83.3 6.9 65 470-534 8-81 (88)
23 cd00052 EH Eps15 homology doma 98.7 6E-08 1.3E-12 76.9 7.3 61 473-533 2-62 (67)
24 PTZ00183 centrin; Provisional 98.6 3.5E-07 7.6E-12 84.9 12.0 95 470-570 53-152 (158)
25 KOG0027 Calmodulin and related 98.6 1.7E-07 3.8E-12 87.4 9.2 105 455-565 13-140 (151)
26 smart00027 EH Eps15 homology d 98.6 1.1E-07 2.5E-12 81.7 6.8 65 470-534 10-74 (96)
27 cd05026 S-100Z S-100Z: S-100Z 98.6 1.4E-07 3E-12 80.9 6.5 65 470-534 10-83 (93)
28 KOG0036 Predicted mitochondria 98.5 2.2E-07 4.8E-12 96.7 8.4 96 469-575 13-116 (463)
29 PLN02964 phosphatidylserine de 98.5 3.3E-07 7.1E-12 103.0 10.0 86 470-565 143-234 (644)
30 PTZ00184 calmodulin; Provision 98.5 9.1E-07 2E-11 81.0 11.3 91 469-565 46-139 (149)
31 cd05031 S-100A10_like S-100A10 98.5 2.2E-07 4.8E-12 79.6 6.3 65 470-534 8-81 (94)
32 KOG0044 Ca2+ sensor (EF-Hand s 98.5 2.7E-07 5.8E-12 89.0 7.3 87 446-532 60-175 (193)
33 cd05025 S-100A1 S-100A1: S-100 98.5 2.3E-07 5E-12 79.2 5.9 65 470-534 9-82 (92)
34 cd05029 S-100A6 S-100A6: S-100 98.4 4.8E-07 1E-11 76.7 6.6 64 471-534 11-81 (88)
35 KOG0044 Ca2+ sensor (EF-Hand s 98.4 7E-07 1.5E-11 86.1 7.9 94 470-565 64-166 (193)
36 cd00252 SPARC_EC SPARC_EC; ext 98.4 5.6E-07 1.2E-11 80.1 6.0 61 469-531 47-107 (116)
37 cd05023 S-100A11 S-100A11: S-1 98.3 1.1E-06 2.5E-11 74.5 6.6 65 470-534 9-82 (89)
38 cd00213 S-100 S-100: S-100 dom 98.3 1.3E-06 2.8E-11 73.8 6.4 65 470-534 8-81 (88)
39 cd00051 EFh EF-hand, calcium b 98.3 2.8E-06 6E-11 64.9 6.7 59 472-530 2-62 (63)
40 KOG0028 Ca2+-binding protein ( 98.2 6.3E-06 1.4E-10 75.8 9.4 91 469-565 68-161 (172)
41 TIGR03276 Phn-HD phosphonate d 98.2 4.9E-06 1.1E-10 79.2 8.5 72 96-169 13-103 (179)
42 PF13833 EF-hand_8: EF-hand do 98.2 3.9E-06 8.5E-11 64.0 6.0 50 483-532 1-53 (54)
43 KOG0034 Ca2+/calmodulin-depend 98.0 1.5E-05 3.2E-10 76.8 8.2 89 470-565 33-123 (187)
44 KOG0034 Ca2+/calmodulin-depend 98.0 4E-05 8.6E-10 73.9 10.5 93 470-565 66-166 (187)
45 KOG4223 Reticulocalbin, calume 98.0 6.7E-06 1.4E-10 83.7 5.4 91 471-565 164-260 (325)
46 PF14658 EF-hand_9: EF-hand do 98.0 1.9E-05 4.2E-10 62.6 6.2 59 474-532 2-64 (66)
47 cd05030 calgranulins Calgranul 97.9 1.9E-05 4.1E-10 66.9 6.1 64 470-533 8-80 (88)
48 KOG0041 Predicted Ca2+-binding 97.7 4.3E-05 9.4E-10 72.7 5.5 64 470-533 99-164 (244)
49 PLN02964 phosphatidylserine de 97.7 8.5E-05 1.8E-09 83.9 8.5 61 472-532 181-243 (644)
50 KOG0036 Predicted mitochondria 97.7 0.00014 2.9E-09 76.4 9.2 113 448-565 49-175 (463)
51 KOG0031 Myosin regulatory ligh 97.6 0.00016 3.4E-09 66.3 6.9 65 468-532 99-165 (171)
52 PF00036 EF-hand_1: EF hand; 97.6 4.1E-05 8.8E-10 50.9 1.7 26 506-531 2-27 (29)
53 PF00036 EF-hand_1: EF hand; 97.5 0.00012 2.7E-09 48.6 3.5 28 472-499 2-29 (29)
54 KOG4223 Reticulocalbin, calume 97.5 0.00014 3.1E-09 74.2 5.7 108 455-570 82-226 (325)
55 cd05024 S-100A10 S-100A10: A s 97.5 0.00035 7.6E-09 59.3 7.1 63 471-534 9-78 (91)
56 PF13499 EF-hand_7: EF-hand do 97.5 0.00012 2.5E-09 58.0 3.6 58 506-565 2-59 (66)
57 PF12763 EF-hand_4: Cytoskelet 97.4 0.00029 6.2E-09 61.6 6.1 64 470-534 10-73 (104)
58 KOG0377 Protein serine/threoni 97.4 0.00064 1.4E-08 71.7 8.9 62 471-532 548-615 (631)
59 KOG0377 Protein serine/threoni 97.3 0.0017 3.8E-08 68.5 11.0 98 470-569 464-612 (631)
60 KOG0038 Ca2+-binding kinase in 97.3 0.00063 1.4E-08 61.8 6.1 62 471-532 109-177 (189)
61 KOG0040 Ca2+-binding actin-bun 97.2 0.0013 2.8E-08 77.8 10.1 118 443-565 2226-2352(2399)
62 KOG0751 Mitochondrial aspartat 97.2 0.00045 9.8E-09 73.7 5.7 87 469-565 107-198 (694)
63 KOG2643 Ca2+ binding protein, 97.2 0.00073 1.6E-08 71.4 7.1 87 469-565 232-337 (489)
64 PF13405 EF-hand_6: EF-hand do 97.2 0.00019 4E-09 48.4 1.8 29 472-500 2-31 (31)
65 PRK12309 transaldolase/EF-hand 97.2 0.0012 2.6E-08 70.9 8.2 53 469-532 333-385 (391)
66 KOG0030 Myosin essential light 97.1 0.00076 1.7E-08 60.9 5.1 60 470-530 88-149 (152)
67 PF13202 EF-hand_5: EF hand; P 96.7 0.00074 1.6E-08 43.2 1.5 21 508-528 3-23 (25)
68 smart00027 EH Eps15 homology d 96.6 0.0078 1.7E-07 51.6 7.4 54 504-565 10-63 (96)
69 PF10591 SPARC_Ca_bdg: Secrete 96.6 0.00059 1.3E-08 60.6 0.1 59 470-528 54-112 (113)
70 PF13202 EF-hand_5: EF hand; P 96.5 0.0028 6.2E-08 40.5 3.2 25 472-496 1-25 (25)
71 cd00052 EH Eps15 homology doma 96.4 0.0073 1.6E-07 47.4 5.7 51 507-565 2-52 (67)
72 PF14788 EF-hand_10: EF hand; 96.4 0.009 1.9E-07 44.9 5.6 47 486-532 1-49 (51)
73 cd00051 EFh EF-hand, calcium b 96.4 0.011 2.4E-07 44.5 6.4 54 506-565 2-55 (63)
74 cd00252 SPARC_EC SPARC_EC; ext 96.1 0.013 2.7E-07 52.3 5.9 53 503-565 47-99 (116)
75 cd05022 S-100A13 S-100A13: S-1 96.1 0.017 3.7E-07 49.0 6.3 55 505-565 9-66 (89)
76 cd05025 S-100A1 S-100A1: S-100 96.0 0.029 6.4E-07 47.6 7.4 60 504-565 9-71 (92)
77 KOG4251 Calcium binding protei 95.9 0.0043 9.3E-08 61.0 2.1 59 470-528 101-164 (362)
78 cd00213 S-100 S-100: S-100 dom 95.8 0.038 8.1E-07 46.3 7.2 60 504-565 8-70 (88)
79 KOG4666 Predicted phosphate ac 95.7 0.012 2.6E-07 60.3 4.5 83 450-532 259-359 (412)
80 cd05031 S-100A10_like S-100A10 95.7 0.039 8.4E-07 47.1 7.0 60 504-565 8-70 (94)
81 KOG0046 Ca2+-binding actin-bun 95.7 0.018 3.8E-07 62.4 5.8 64 470-534 19-87 (627)
82 cd05026 S-100Z S-100Z: S-100Z 95.6 0.046 1E-06 46.6 7.3 59 505-565 11-72 (93)
83 cd05027 S-100B S-100B: S-100B 95.6 0.053 1.1E-06 45.9 7.4 59 505-565 9-70 (88)
84 PF13405 EF-hand_6: EF-hand do 95.5 0.017 3.7E-07 38.7 3.4 27 505-531 1-27 (31)
85 PRK14707 hypothetical protein; 95.3 0.042 9.1E-07 67.9 7.9 151 253-430 2263-2423(2710)
86 PF13833 EF-hand_8: EF-hand do 95.1 0.046 9.9E-07 41.3 4.9 43 517-565 1-44 (54)
87 KOG4065 Uncharacterized conser 94.9 0.052 1.1E-06 47.6 5.2 56 474-529 71-142 (144)
88 KOG2643 Ca2+ binding protein, 94.8 0.038 8.3E-07 58.8 5.1 88 478-565 207-305 (489)
89 cd05023 S-100A11 S-100A11: S-1 94.5 0.16 3.5E-06 43.0 7.3 59 505-565 10-71 (89)
90 KOG2562 Protein phosphatase 2 94.4 0.095 2.1E-06 56.3 6.9 99 460-565 264-370 (493)
91 cd05029 S-100A6 S-100A6: S-100 94.2 0.18 3.8E-06 42.7 6.9 57 506-565 12-70 (88)
92 KOG0038 Ca2+-binding kinase in 94.1 0.14 3E-06 46.9 6.3 86 476-565 77-168 (189)
93 smart00054 EFh EF-hand, calciu 94.0 0.049 1.1E-06 34.0 2.4 23 474-496 4-26 (29)
94 smart00054 EFh EF-hand, calciu 93.1 0.1 2.2E-06 32.5 2.8 27 506-532 2-28 (29)
95 PRK14707 hypothetical protein; 92.9 0.65 1.4E-05 58.2 11.0 193 213-430 2429-2654(2710)
96 smart00471 HDc Metal dependent 92.7 0.072 1.6E-06 45.8 2.2 37 106-142 2-44 (124)
97 KOG4251 Calcium binding protei 92.5 0.37 7.9E-06 47.8 7.0 88 472-565 142-255 (362)
98 KOG1029 Endocytic adaptor prot 92.4 0.16 3.4E-06 57.5 4.8 65 470-534 195-259 (1118)
99 KOG4578 Uncharacterized conser 92.4 0.27 5.9E-06 50.6 6.1 62 471-532 334-398 (421)
100 PF01966 HD: HD domain; Inter 92.3 0.1 2.3E-06 45.2 2.7 33 110-142 2-41 (122)
101 KOG0751 Mitochondrial aspartat 91.7 0.5 1.1E-05 51.2 7.3 88 470-565 33-127 (694)
102 PRK12309 transaldolase/EF-hand 91.6 0.29 6.3E-06 52.8 5.6 51 502-571 332-384 (391)
103 KOG0041 Predicted Ca2+-binding 90.5 0.54 1.2E-05 45.4 5.6 56 504-565 99-154 (244)
104 PF09279 EF-hand_like: Phospho 90.5 0.27 5.8E-06 40.7 3.2 60 472-532 2-69 (83)
105 PRK09169 hypothetical protein; 89.0 1.5 3.2E-05 55.8 9.2 110 304-430 1915-2033(2316)
106 cd05030 calgranulins Calgranul 88.9 1.9 4E-05 36.3 7.2 58 506-565 10-70 (88)
107 KOG3555 Ca2+-binding proteogly 87.9 0.6 1.3E-05 48.5 4.1 61 469-531 249-309 (434)
108 TIGR03401 cyanamide_fam HD dom 87.6 2.9 6.2E-05 41.8 8.8 51 82-140 37-96 (228)
109 COG4341 Predicted HD phosphohy 86.4 1.2 2.5E-05 41.7 4.7 41 96-138 18-60 (186)
110 KOG1955 Ral-GTPase effector RA 84.9 1.3 2.8E-05 48.1 4.9 64 471-534 232-295 (737)
111 cd05024 S-100A10 S-100A10: A s 83.2 1.1 2.5E-05 38.1 3.0 43 455-500 36-78 (91)
112 KOG3866 DNA-binding protein of 82.9 1.7 3.8E-05 44.5 4.6 59 474-532 248-324 (442)
113 PF10591 SPARC_Ca_bdg: Secrete 82.8 0.42 9E-06 42.4 0.2 55 503-565 53-107 (113)
114 KOG0040 Ca2+-binding actin-bun 82.2 2.5 5.5E-05 51.5 6.2 59 505-565 2254-2315(2399)
115 PRK12703 tRNA 2'-O-methylase; 82.0 4.9 0.00011 42.5 7.8 133 108-253 187-332 (339)
116 KOG4666 Predicted phosphate ac 80.2 2.5 5.4E-05 43.8 4.7 90 469-565 258-350 (412)
117 PRK03826 5'-nucleotidase; Prov 80.0 4 8.7E-05 39.8 6.0 35 107-141 27-72 (195)
118 PF14658 EF-hand_9: EF-hand do 79.4 1.8 3.8E-05 34.6 2.6 31 468-498 33-64 (66)
119 COG1418 Predicted HD superfami 78.3 2.7 5.7E-05 41.9 4.2 52 105-156 33-97 (222)
120 PF05042 Caleosin: Caleosin re 78.2 14 0.00031 35.2 8.7 92 471-565 8-157 (174)
121 PF05517 p25-alpha: p25-alpha 76.6 6.7 0.00015 36.7 6.2 60 475-534 7-71 (154)
122 KOG2562 Protein phosphatase 2 74.6 8.8 0.00019 41.8 7.1 93 473-565 142-244 (493)
123 KOG2243 Ca2+ release channel ( 73.2 4.8 0.0001 48.6 4.9 60 472-531 4059-4119(5019)
124 PF14788 EF-hand_10: EF hand; 73.2 2.2 4.7E-05 32.3 1.5 31 469-499 20-50 (51)
125 KOG0169 Phosphoinositide-speci 70.4 11 0.00023 43.5 6.9 86 470-565 136-223 (746)
126 KOG0042 Glycerol-3-phosphate d 68.8 4.8 0.0001 44.9 3.6 64 471-534 594-659 (680)
127 PF12763 EF-hand_4: Cytoskelet 68.7 12 0.00027 32.6 5.5 53 504-565 10-62 (104)
128 cd00077 HDc Metal dependent ph 67.7 3.5 7.7E-05 35.8 2.0 35 108-142 2-44 (145)
129 KOG0035 Ca2+-binding actin-bun 67.6 7.8 0.00017 45.6 5.2 78 470-550 747-831 (890)
130 KOG1029 Endocytic adaptor prot 65.5 12 0.00026 43.2 5.9 66 468-533 11-78 (1118)
131 PF12917 HD_2: HD containing h 64.9 5.5 0.00012 39.2 2.8 94 108-211 29-143 (215)
132 COG1713 Predicted HD superfami 64.8 26 0.00057 33.8 7.4 106 109-219 18-141 (187)
133 KOG3555 Ca2+-binding proteogly 64.5 5.6 0.00012 41.6 2.9 86 470-565 211-301 (434)
134 PRK00106 hypothetical protein; 58.0 11 0.00023 42.6 3.9 37 105-141 347-388 (535)
135 COG1896 Predicted hydrolases o 57.8 27 0.00059 34.0 6.3 98 105-210 30-141 (193)
136 COG1078 HD superfamily phospho 57.1 5.3 0.00011 43.7 1.4 29 110-138 53-95 (421)
137 TIGR00488 putative HD superfam 55.9 12 0.00026 35.0 3.4 31 110-140 10-45 (158)
138 PF08726 EFhand_Ca_insen: Ca2+ 55.6 3.8 8.1E-05 33.1 -0.1 54 469-528 5-65 (69)
139 KOG4065 Uncharacterized conser 55.6 33 0.00072 30.5 5.7 68 502-569 64-142 (144)
140 KOG0998 Synaptic vesicle prote 54.7 3.8 8.3E-05 48.7 -0.2 65 470-534 283-347 (847)
141 PF09824 ArsR: ArsR transcript 53.7 31 0.00068 32.3 5.6 90 135-229 22-114 (160)
142 TIGR00277 HDIG uncharacterized 53.5 9.2 0.0002 30.3 1.9 34 107-140 3-41 (80)
143 PF09279 EF-hand_like: Phospho 49.8 29 0.00063 28.4 4.4 56 505-565 1-60 (83)
144 TIGR00295 conserved hypothetic 48.8 20 0.00044 33.7 3.7 57 107-163 12-86 (164)
145 PRK10119 putative hydrolase; P 48.2 42 0.00091 33.7 6.0 52 85-140 6-62 (231)
146 PF13023 HD_3: HD domain; PDB: 47.8 12 0.00025 35.4 1.9 96 107-212 21-130 (165)
147 KOG1707 Predicted Ras related/ 44.6 13 0.00028 41.8 1.9 64 470-533 315-378 (625)
148 cd07313 terB_like_2 tellurium 44.1 78 0.0017 26.9 6.4 50 483-532 12-65 (104)
149 PRK12704 phosphodiesterase; Pr 43.6 26 0.00055 39.5 4.1 36 105-140 332-372 (520)
150 TIGR03319 YmdA_YtgF conserved 43.2 27 0.00058 39.3 4.2 35 106-140 327-366 (514)
151 KOG4004 Matricellular protein 41.9 11 0.00024 36.5 0.8 60 472-531 189-249 (259)
152 PF09069 EF-hand_3: EF-hand; 40.7 87 0.0019 26.6 5.9 60 470-532 3-75 (90)
153 PRK01286 deoxyguanosinetriphos 40.0 27 0.00059 37.0 3.4 30 110-139 64-98 (336)
154 PLN02952 phosphoinositide phos 39.3 1.1E+02 0.0024 35.1 8.2 51 483-534 13-67 (599)
155 PRK12705 hypothetical protein; 37.8 36 0.00078 38.2 4.0 37 105-141 320-361 (508)
156 PF11314 DUF3117: Protein of u 37.2 3.6 7.8E-05 30.4 -2.5 16 51-66 22-37 (51)
157 KOG4347 GTPase-activating prot 36.8 28 0.0006 39.6 2.9 57 469-526 554-612 (671)
158 PF00404 Dockerin_1: Dockerin 36.6 36 0.00078 20.9 2.1 14 480-493 1-14 (21)
159 PF05153 DUF706: Family of unk 35.8 64 0.0014 32.5 5.0 52 86-138 41-93 (253)
160 PF05042 Caleosin: Caleosin re 33.5 1.1E+02 0.0024 29.2 6.0 60 469-529 95-163 (174)
161 KOG0169 Phosphoinositide-speci 33.0 1.5E+02 0.0033 34.5 8.1 83 449-532 171-274 (746)
162 PF04753 Corona_NS2: Coronavir 32.8 22 0.00048 30.3 1.1 12 246-257 20-31 (109)
163 PF08414 NADPH_Ox: Respiratory 32.1 57 0.0012 28.2 3.4 62 470-534 30-94 (100)
164 PRK07152 nadD putative nicotin 30.9 46 0.00099 35.3 3.4 34 107-140 195-233 (342)
165 COG4339 Uncharacterized protei 30.8 98 0.0021 29.4 5.0 73 66-144 7-80 (208)
166 PRK13480 3'-5' exoribonuclease 30.3 47 0.001 34.9 3.3 31 109-139 160-196 (314)
167 PRK03007 deoxyguanosinetriphos 30.2 48 0.001 36.4 3.4 30 110-139 72-106 (428)
168 PF08976 DUF1880: Domain of un 29.4 46 0.001 29.6 2.5 30 502-531 5-34 (118)
169 COG2316 Predicted hydrolase (H 29.4 1.1E+02 0.0023 29.1 5.0 64 106-169 45-123 (212)
170 PRK05318 deoxyguanosinetriphos 27.0 40 0.00087 37.0 2.2 30 110-139 60-105 (432)
171 KOG4347 GTPase-activating prot 26.5 1.2E+02 0.0027 34.6 5.8 55 503-564 554-608 (671)
172 COG1578 Uncharacterized conser 25.5 3.9E+02 0.0084 27.5 8.5 112 206-326 14-139 (285)
173 COG2206 c-di-GMP phosphodieste 25.4 2.2E+02 0.0047 30.2 7.3 140 107-272 146-315 (344)
174 PLN02222 phosphoinositide phos 24.9 1.2E+02 0.0026 34.7 5.4 62 469-532 24-90 (581)
175 PF14513 DAG_kinase_N: Diacylg 24.8 65 0.0014 29.7 2.8 50 484-533 5-61 (138)
176 KOG1707 Predicted Ras related/ 24.7 2.2E+02 0.0047 32.5 7.2 61 470-530 195-263 (625)
177 KOG4578 Uncharacterized conser 24.4 54 0.0012 34.4 2.3 61 506-571 335-397 (421)
178 PF12522 UL73_N: Cytomegalovir 24.1 36 0.00079 21.9 0.7 17 36-52 8-24 (27)
179 PLN02228 Phosphoinositide phos 24.0 1.5E+02 0.0032 33.9 5.9 63 468-532 22-92 (567)
180 KOG2871 Uncharacterized conser 23.7 44 0.00094 35.6 1.6 58 470-527 309-369 (449)
181 PF05099 TerB: Tellurite resis 23.6 85 0.0018 28.1 3.4 49 483-531 36-88 (140)
182 PF04031 Las1: Las1-like ; In 23.3 3.3E+02 0.0071 25.5 7.2 72 81-169 22-96 (154)
183 PF07499 RuvA_C: RuvA, C-termi 23.2 1.6E+02 0.0034 21.5 4.1 39 489-529 3-41 (47)
184 PF09373 PMBR: Pseudomurein-bi 23.0 88 0.0019 21.2 2.5 17 518-534 2-18 (33)
185 PF14473 RD3: RD3 protein 22.1 1.5E+02 0.0032 27.2 4.4 47 245-292 77-127 (133)
186 TIGR02675 tape_meas_nterm tape 21.4 1.1E+02 0.0025 24.8 3.3 16 483-498 27-42 (75)
187 COG0864 NikR Predicted transcr 21.1 77 0.0017 29.1 2.5 104 63-169 14-124 (136)
188 cd08780 Death_TRADD Death Doma 20.8 5.3E+02 0.012 22.0 7.5 69 218-294 2-79 (90)
189 cd08318 Death_NMPP84 Death dom 20.7 4.9E+02 0.011 21.6 7.5 74 215-294 4-77 (86)
190 KOG3866 DNA-binding protein of 20.2 2.3E+02 0.0049 29.7 5.8 82 488-569 225-321 (442)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=1.4e-98 Score=825.91 Aligned_cols=361 Identities=32% Similarity=0.464 Sum_probs=332.5
Q ss_pred HHHHHHHHHhh-cCChhhHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHcCCCHHHHHhhhhhhccccCCC
Q 008155 66 GAFNELTERMN-VLSSSSSRLLFKALKLSIPMLQSLPLSPDSRSPLTKALSVALLLADLQMDAEVISAGLLRQVVESGGV 144 (576)
Q Consensus 66 ~~~~~l~~~~~-~~~~~~~~~l~~A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL~~~~~d~~~i~AalLHDvvEDt~~ 144 (576)
..+.++.+.+. +..+.+.+ +.+|+.||.++|.||.|+ +|+||++||++||.||+++++|.++++||||||++|||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~-SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~ 84 (701)
T COG0317 7 VELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRK-SGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPV 84 (701)
T ss_pred ccHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCc-CCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCC
Confidence 34566777777 55455555 999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CHHHHhhhcCHHHHHHHHHhhhhhhhhhhhcccchHHHHHHHHHHHHhc-CCccEEeehhhhHHhhccccCCCCHHHHHH
Q 008155 145 SIQQVRDRIGIGTAHLLHESLRVKNNVNLKLQVLDDETAAALRKFCLTY-YDIRALILDLAIRLDMMRHLDYLPRYQQLM 223 (576)
Q Consensus 145 t~~~i~~~fG~~Va~lV~~ltk~~~~~~~~~~~~~~~~~~~~r~~lla~-~d~rv~lIKLADrl~Nmr~l~~~~~~k~~~ 223 (576)
|.++|++.||++|+.||+||||++. ++ +..+....+++++|+|+++| .|+||++||||||||||||+..++++||++
T Consensus 85 t~e~i~~~FG~eVa~LV~GvTkl~~-i~-~~~~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~r 162 (701)
T COG0317 85 TEELIEEIFGKEVAKLVEGVTKLKK-IG-QLSSEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRR 162 (701)
T ss_pred CHHHHHHHHCHHHHHHHhhHHHhhh-hh-ccCccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHHH
Confidence 9999999999999999999999999 73 23345556899999999999 999999999999999999999988999999
Q ss_pred HHHHHHHHHHhHHhHhCchhHHHHHHHhhhhhcccchHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHhcccccccccce
Q 008155 224 ISLEVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTDATLADLVEDV 303 (576)
Q Consensus 224 ~a~Et~~iy~pLA~rlG~~~lk~eLEdl~f~~l~P~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~il~~~~~~~ 303 (576)
+|+||++||||||||||||++||||||+||+|++|+.|..|.+.+.+.+..++.+++.+...|++.|.+.|| .+
T Consensus 163 iakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi------~a 236 (701)
T COG0317 163 IARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGI------KA 236 (701)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------eE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred eEEeeccCcchHHHHHhhcCCCCCccCCCceEEEEEecCCCCcccchhcHHHHHHHHHHHHhccccCCCcchhhhcCCCc
Q 008155 304 SVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKA 383 (576)
Q Consensus 304 ~v~~R~K~~~Si~~Kl~r~~~~~~~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~~~~~i~~~~~~~~~~~kDyI~~Pk~ 383 (576)
+|+||+|++||||+||++++..|++|+|+.|+||||++ +.+||++||+||.+|+|+|+|||||||+||+
T Consensus 237 ~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~-----------~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~ 305 (701)
T COG0317 237 EVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT-----------IPDCYTALGIVHTLWKPIPGEFDDYIANPKP 305 (701)
T ss_pred EEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC-----------hHHHHHHHHHHHhcCcCCCCccccccccCCC
Confidence 99999999999999999999999999999999999998 6779999999999999999999999999999
Q ss_pred CCCcccceEEEecCCCCCcceEEEEeeCHhHHHHHhccCcccccccCCCC-ChHHHHHHHHHHHHHHHH
Q 008155 384 NGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGGLT-NPEEAKRLKAIMLAAAEL 451 (576)
Q Consensus 384 nGYqSlH~~v~~~~~~~~~~~~EIQIRT~~mh~~A~~g~aah~~yk~~~~-~~~~~krL~~l~~aA~el 451 (576)
||||||||+|. |+.|.++||||||..||..||+|+||||.||++.. ..+...|++.++....+.
T Consensus 306 NgYQSlHTtv~----gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~~~~~~~~Wlr~lle~q~~~ 370 (701)
T COG0317 306 NGYQSLHTTVI----GPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGSAYEEKIAWLRQLLEWQEES 370 (701)
T ss_pred CCCceeEEEEE----CCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCchhhHHHHHHHHHHHHHHhc
Confidence 99999999997 45555799999999999999999999999999863 333357777765544443
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=2.7e-97 Score=829.00 Aligned_cols=353 Identities=26% Similarity=0.419 Sum_probs=328.0
Q ss_pred HHHHHHHhh-cCChhhHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHcCCCHHHHHhhhhhhccccCCCCH
Q 008155 68 FNELTERMN-VLSSSSSRLLFKALKLSIPMLQSLPLSPDSRSPLTKALSVALLLADLQMDAEVISAGLLRQVVESGGVSI 146 (576)
Q Consensus 68 ~~~l~~~~~-~~~~~~~~~l~~A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL~~~~~d~~~i~AalLHDvvEDt~~t~ 146 (576)
+.+|...+. |+ +.+.+.+.+|+.||..+|.| |+ +|+|||+||++||.||+++++|.++|+||||||++|||++|.
T Consensus 17 ~~~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~-sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~ 92 (743)
T PRK10872 17 PDKWIASLGITS-QQSCERLAETWAYCLQQTQG--HP-DASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSE 92 (743)
T ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CC-CCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCH
Confidence 456777766 77 88999999999999999999 87 999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCHHHHHHHHHhhhhhhhhhhhc----ccchHHHHHHHHHHHHhc-CCccEEeehhhhHHhhccccCCCCHHHH
Q 008155 147 QQVRDRIGIGTAHLLHESLRVKNNVNLKL----QVLDDETAAALRKFCLTY-YDIRALILDLAIRLDMMRHLDYLPRYQQ 221 (576)
Q Consensus 147 ~~i~~~fG~~Va~lV~~ltk~~~~~~~~~----~~~~~~~~~~~r~~lla~-~d~rv~lIKLADrl~Nmr~l~~~~~~k~ 221 (576)
++|++.||++||.||+||||++. +.... .+....+++++|||+++| .|+||++|||||||||||||..+|++||
T Consensus 93 e~i~~~FG~~Va~lVdgvtKl~~-i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq 171 (743)
T PRK10872 93 DVLRESVGKSIVNLIHGVRDMDA-IRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDER 171 (743)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHH-hhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999999998 75311 134566999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHhHhCchhHHHHHHHhhhhhcccchHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHhccccccccc
Q 008155 222 LMISLEVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTDATLADLVE 301 (576)
Q Consensus 222 ~~~a~Et~~iy~pLA~rlG~~~lk~eLEdl~f~~l~P~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~il~~~~~ 301 (576)
+++|+||++||||||||||||+||||||||||+||+|+.|..|.+++.+.+.+++.+++.+.+.|++.|.+.||
T Consensus 172 ~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i------ 245 (743)
T PRK10872 172 VLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGV------ 245 (743)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeEEeeccCcchHHHHHhhcCCCCCccCCCceEEEEEecCCCCcccchhcHHHHHHHHHHHHhccccCCCcchhhhcCC
Q 008155 302 DVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARP 381 (576)
Q Consensus 302 ~~~v~~R~K~~~Si~~Kl~r~~~~~~~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~~~~~i~~~~~~~~~~~kDyI~~P 381 (576)
.++|+||+|++||||+||++++.+|++|+|+.|+||||++ +.+||+++|+||++|+|+|++|||||+.|
T Consensus 246 ~~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~-----------~~dCY~vLg~ih~~~~pip~~fkDYIa~P 314 (743)
T PRK10872 246 KAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER-----------LQDCYAALGIVHTHYRHLPDEFDDYVANP 314 (743)
T ss_pred ceEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC-----------HHHHHHHHHHHHhhccCCcchhhhcccCC
Confidence 8899999999999999999999999999999999999987 77899999999999999999999999999
Q ss_pred CcCCCcccceEEEecCCCCCcceEEEEeeCHhHHHHHhccCcccccccCCCCC-------hHHHHHHHHHHH
Q 008155 382 KANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGGLTN-------PEEAKRLKAIML 446 (576)
Q Consensus 382 k~nGYqSlH~~v~~~~~~~~~~~~EIQIRT~~mh~~A~~g~aah~~yk~~~~~-------~~~~krL~~l~~ 446 (576)
|+||||||||+|. |+.|.++||||||..||.+||+|+||||.||++... .....||+.++.
T Consensus 315 K~NGYqSLHttv~----~~~g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle 382 (743)
T PRK10872 315 KPNGYQSIHTVVL----GPGGKTVEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIA 382 (743)
T ss_pred CCCCcceeEEEEE----CCCCcEEEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHH
Confidence 9999999999997 345568999999999999999999999999986432 122457776654
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=1.2e-93 Score=802.87 Aligned_cols=355 Identities=28% Similarity=0.431 Sum_probs=330.5
Q ss_pred HHHHHHHHhh-cCChhhHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHcCCCHHHHHhhhhhhccccCCCC
Q 008155 67 AFNELTERMN-VLSSSSSRLLFKALKLSIPMLQSLPLSPDSRSPLTKALSVALLLADLQMDAEVISAGLLRQVVESGGVS 145 (576)
Q Consensus 67 ~~~~l~~~~~-~~~~~~~~~l~~A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL~~~~~d~~~i~AalLHDvvEDt~~t 145 (576)
.+.+|...+. |+++.+.+++.+|+.||.++|.||+|+ +|+||+.||++||.+|+++++|.++++||||||++|||++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rk-sGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~~t 81 (702)
T PRK11092 3 LFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRS-SGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTPAT 81 (702)
T ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCC-CCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCCCC
Confidence 3456776666 899999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHhhhhhhhhhhhcccchHHHHHHHHHHHHhc-CCccEEeehhhhHHhhccccCCCCHHHHHHH
Q 008155 146 IQQVRDRIGIGTAHLLHESLRVKNNVNLKLQVLDDETAAALRKFCLTY-YDIRALILDLAIRLDMMRHLDYLPRYQQLMI 224 (576)
Q Consensus 146 ~~~i~~~fG~~Va~lV~~ltk~~~~~~~~~~~~~~~~~~~~r~~lla~-~d~rv~lIKLADrl~Nmr~l~~~~~~k~~~~ 224 (576)
.++|++.||++|+.+|++|||+.. ++.. .....+++++|+|+++| .|+||++|||||||||||+|..+|+++|+++
T Consensus 82 ~e~i~~~FG~~Va~lV~gvTk~~~-l~~~--~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~i 158 (702)
T PRK11092 82 YQDMEQLFGKSVAELVEGVSKLDK-LKFR--DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRI 158 (702)
T ss_pred HHHHHHHHCHHHHHHHHHHHhhcc-cccc--chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHH
Confidence 999999999999999999999988 6542 34456899999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhHhCchhHHHHHHHhhhhhcccchHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHhccccccccccee
Q 008155 225 SLEVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTDATLADLVEDVS 304 (576)
Q Consensus 225 a~Et~~iy~pLA~rlG~~~lk~eLEdl~f~~l~P~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~il~~~~~~~~ 304 (576)
|+||++|||||||||||++||||||||||+||+|+.|..|.+.+.+.+.+++.+++.+...|++.|.+.|| .++
T Consensus 159 A~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~i------~~~ 232 (702)
T PRK11092 159 ARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGI------PCR 232 (702)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------cEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred EEeeccCcchHHHHHhhcCCCCCccCCCceEEEEEecCCCCcccchhcHHHHHHHHHHHHhccccCCCcchhhhcCCCcC
Q 008155 305 VQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKAN 384 (576)
Q Consensus 305 v~~R~K~~~Si~~Kl~r~~~~~~~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~~~~~i~~~~~~~~~~~kDyI~~Pk~n 384 (576)
|+||.|++||||+||+++|.+|++|+|++|+||||++ +.+||+++|+||+.|+|+|++|||||+.||+|
T Consensus 233 i~~R~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~-----------~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~N 301 (702)
T PRK11092 233 VSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD-----------SDTCYRVLGQMHSLYKPRPGRVKDYIAIPKAN 301 (702)
T ss_pred EEeccCCHHHHHHHHHHcCCChhHhccceeEEEEECC-----------HHHHHHHHHHHHhcCCCCcCccccccCCCCCC
Confidence 9999999999999999999999999999999999997 67899999999999999999999999999999
Q ss_pred CCcccceEEEecCCCCCcceEEEEeeCHhHHHHHhccCcccccccCCCCC--h---HHHHHHHHHHH
Q 008155 385 GYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGGLTN--P---EEAKRLKAIML 446 (576)
Q Consensus 385 GYqSlH~~v~~~~~~~~~~~~EIQIRT~~mh~~A~~g~aah~~yk~~~~~--~---~~~krL~~l~~ 446 (576)
|||||||+|. |+.+.++||||||..||.+||+|+||||.||++... . ...+||+.++.
T Consensus 302 gYqSLHt~v~----g~~g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~~~~~~~~wlr~ll~ 364 (702)
T PRK11092 302 GYQSLHTSMI----GPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTTAQIRAQRWMQSLLE 364 (702)
T ss_pred CCceEEEEEE----CCCCcEEEEEEEcHHHHHHHhhhhHhhhhhccCCCccchhHHHHHHHHHHHHH
Confidence 9999999996 445568999999999999999999999999986421 1 11457776654
No 4
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-94 Score=727.37 Aligned_cols=495 Identities=31% Similarity=0.395 Sum_probs=442.9
Q ss_pred Cchhhh-hhcCCCcccCCCCCCCCCCccchhHHHHHHHHHHHHHHhh--cCChhhHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008155 31 LNSHSI-RAESSSSSFASSPAPLPSTAGEKMVVKLVGAFNELTERMN--VLSSSSSRLLFKALKLSIPMLQSLPLSPDSR 107 (576)
Q Consensus 31 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~--~~~~~~~~~l~~A~~~A~~~h~gq~rk~~g~ 107 (576)
=+-+++ +++++|++|-+++...++..||+|++|+++.|++-++++. ..+..+.+++.+|+++|+++|+||+|+.+|+
T Consensus 19 ~~~~~~rKae~~~v~~E~~s~l~~ea~~~~meve~~~~~~r~~eR~~~~~~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~r 98 (543)
T KOG1157|consen 19 GFNGFVRKAEGSCVDYEMDSVLVDEALGFKMEVELVGPYARDLERRAQLWHKTFSSELVIKALYEAAKAHRGQMRADDDR 98 (543)
T ss_pred hhcccCcccccccccccccccccccccCCceeeeehhhhhhhhhhhhhhhhhcCcHHHHHHHHHHHHHHHhcccccCCCC
Confidence 355666 5699999999999999999999999999999999999988 6778899999999999999999999997777
Q ss_pred ChhHHHHHHHHHHHHcCCCHHHHHhhhhhhccccCCCCHHHHhhhcCHHHHHHHHHhhhhhhhhhhhcccchHHHHHHHH
Q 008155 108 SPLTKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNLKLQVLDDETAAALR 187 (576)
Q Consensus 108 pyi~H~l~Va~iL~~~~~d~~~i~AalLHDvvEDt~~t~~~i~~~fG~~Va~lV~~ltk~~~~~~~~~~~~~~~~~~~~r 187 (576)
||+.||+.+|.||+++++|+++++||+||||||||..|.++|+..||.+|++||+++|+.++ ++...+... .+.++++
T Consensus 99 PY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDDt~~S~eeI~~~FG~gVa~LV~EvtddKn-L~K~eRk~l-~qiet~~ 176 (543)
T KOG1157|consen 99 PYLNHCIETAMILADIGADSTVVVAAILHDVVDDTFMSYEEILRHFGTGVADLVEEVTDDKN-LSKLERKNL-TQIETVE 176 (543)
T ss_pred chhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHhCccHHHHHHHHhcccc-hhHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 887644333 5677787
Q ss_pred HHHHhcCCccEEeehhhhHHhhccccCCCCHHHHHHHHHHHHHHHHhHHhHhCchhHHHHHHHhhhhhcccchHHHHHHH
Q 008155 188 KFCLTYYDIRALILDLAIRLDMMRHLDYLPRYQQLMISLEVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTW 267 (576)
Q Consensus 188 ~~lla~~d~rv~lIKLADrl~Nmr~l~~~~~~k~~~~a~Et~~iy~pLA~rlG~~~lk~eLEdl~f~~l~P~~y~~i~~~ 267 (576)
++ .++++.||+||||||+|||||+|..+||.+|++.++|++.||+|+|+++|++..+.+||||||+|++|..|.++..|
T Consensus 177 ~f-yak~s~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~ 255 (543)
T KOG1157|consen 177 MF-YAKASARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSM 255 (543)
T ss_pred HH-HHHHHHHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHH
Confidence 55 45667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcHHHHHHHHHHHHHHHHhcccccccccceeEEeeccCcchHHHHHhhcCCCCCccCCCceEEEEEecCCCCcc
Q 008155 268 LRSHETGSKPLIDIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPEEVNDVLGLRVIIKPSSNLVN 347 (576)
Q Consensus 268 l~~~~~~~~~~~~~~~~~l~~~l~~~~il~~~~~~~~v~~R~K~~~Si~~Kl~r~~~~~~~i~Dl~g~RvI~~~~~~~~~ 347 (576)
|+.... +..|..+.+.|++.|...|+ ..+-|+||.||+||||+||.|+|+..++|+|+.|+|+|+.+
T Consensus 256 l~~~~~--~~mi~~~~~~l~~~l~~a~i-----~~~~i~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~------ 322 (543)
T KOG1157|consen 256 LEDSFD--EAMITSAIEKLEQALKKAGI-----SYHVIKGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDN------ 322 (543)
T ss_pred Hhcccc--hHHHHHHHHHHHHHHHhccc-----eeEEEecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcC------
Confidence 998665 89999999999999999998 35679999999999999999999999999999999999998
Q ss_pred cchhcHHHHHHHHHHHHhccccCCCcchhhhcCCCcCCCcccceEEEecCCCCCcceEEEEeeCHhHHHHHhccCccccc
Q 008155 348 TSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAF 427 (576)
Q Consensus 348 ~~~~~~~~cy~~~~~i~~~~~~~~~~~kDyI~~Pk~nGYqSlH~~v~~~~~~~~~~~~EIQIRT~~mh~~A~~g~aah~~ 427 (576)
+.+||+++|+||++|+.+|++.||||+.||.|||||||++|.+. | ..++||||||..||.-|++|.|+||+
T Consensus 323 -----~~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh~~v~~d--~--~~plevqirt~em~~~a~~g~aah~~ 393 (543)
T KOG1157|consen 323 -----ESDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLHTVVMVD--G--TRPLEVQIRTMEMHLQAEFGFAAHWR 393 (543)
T ss_pred -----chHHHHHHHHHHHHHHhCcchhhhhhcCccccccceeeeEEecC--C--cceeEEEEeeeccccccccchhhHhh
Confidence 45699999999999999999999999999999999999999752 2 23699999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC--ccccchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHH
Q 008155 428 YKGGLTNPEEAKRLKAIMLAAAELAALRLKDIPSTNHKG--FEFDWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGED 505 (576)
Q Consensus 428 yk~~~~~~~~~krL~~l~~aA~elA~~~F~~~d~~~~~~--i~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~ 505 (576)
||+|..++...+++...+.++.-.+..+.++..+....+ ++..+-...|+..|++|+|-++..++.+. +.+|.++..
T Consensus 394 yk~g~~~~~~~q~~~~~~~~~~~~~~~~~kd~ss~~~~~~k~~s~~~d~~f~~~~~~~~~~~~~~~~ie~-e~m~~~~~~ 472 (543)
T KOG1157|consen 394 YKEGKTSSFVLQMVEWARWVVTWHAEIMSKDISSIKSSSCKFPSHQEDCPFSYKPKNGQGGPVYVIVIEN-EKMGVQEFP 472 (543)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCccccCceeecCCCCCCCceEEEEeec-cccCCCCCc
Confidence 999999999999999999999999988888886655544 24556678899999999999998888776 777764333
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHH
Q 008155 506 AREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEK 553 (576)
Q Consensus 506 v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~ 553 (576)
+++...|.+.+|..+-++|-.+..+.+.+++..+.+.+++--+...
T Consensus 473 --e~~~~~d~~s~~~~~s~~~~~~~~~~e~lr~~~~~d~~~k~~m~d~ 518 (543)
T KOG1157|consen 473 --EMSTVSDLLSRAGPGSSRWSMYQIPAEELRPRLNQDLKYKLKMGDV 518 (543)
T ss_pred --hhhhHHHhhccCCCCccchhhhcCcHHHhhhhhccchhHHhhhcch
Confidence 7788889999999999999888887777776556666665555443
No 5
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=4.4e-89 Score=769.12 Aligned_cols=333 Identities=35% Similarity=0.569 Sum_probs=312.3
Q ss_pred HHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHcCCCHHHHHhhhhhhccccCCCCHHHHhhhcCHHHHHHHHHhhhhh
Q 008155 89 ALKLSIPMLQSLPLSPDSRSPLTKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVK 168 (576)
Q Consensus 89 A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL~~~~~d~~~i~AalLHDvvEDt~~t~~~i~~~fG~~Va~lV~~ltk~~ 168 (576)
|+.||.++|.||+|+ +|+||+.||++||.+|+++++|.++++||||||++|||++|.++|++.||++|+.+|++|||++
T Consensus 1 A~~~A~~aH~gQ~rk-sg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vTk~~ 79 (683)
T TIGR00691 1 ALEIAKDLHEGQKRK-SGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVTKIT 79 (683)
T ss_pred CHHHHHHhcccCcCC-CCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHHHhc
Confidence 689999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchHHHHHHHHHHHHhc-CCccEEeehhhhHHhhccccCCCCHHHHHHHHHHHHHHHHhHHhHhCchhHHHH
Q 008155 169 NNVNLKLQVLDDETAAALRKFCLTY-YDIRALILDLAIRLDMMRHLDYLPRYQQLMISLEVMKIHAPLAHAVATNYLSFE 247 (576)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~r~~lla~-~d~rv~lIKLADrl~Nmr~l~~~~~~k~~~~a~Et~~iy~pLA~rlG~~~lk~e 247 (576)
. ++.. .....+++++|+|+++| .|+||++|||||||||||++..+|+++|+++|+||++||+||||||||++||+|
T Consensus 80 ~-~~~~--~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik~e 156 (683)
T TIGR00691 80 K-LKKK--SRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIKTE 156 (683)
T ss_pred c-cccc--hhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 8 6542 34456889999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccchHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHhcccccccccceeEEeeccCcchHHHHHhhcCCCCC
Q 008155 248 LEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIPE 327 (576)
Q Consensus 248 LEdl~f~~l~P~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~il~~~~~~~~v~~R~K~~~Si~~Kl~r~~~~~~ 327 (576)
||||||+||+|+.|..|.+.+++.+.+++.+++.+...|.+.|.+.|+ .++|+||+|++||||+||++++.+++
T Consensus 157 Ledl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~i------~~~i~~R~K~~~Si~~Km~~k~~~~~ 230 (683)
T TIGR00691 157 LEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSGI------EAELEGRSKHLYSIYQKMTRKGQNFD 230 (683)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ceEEEeeeCCHHHHHHHHHhcCCCHH
Confidence 999999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred ccCCCceEEEEEecCCCCcccchhcHHHHHHHHHHHHhccccCCCcchhhhcCCCcCCCcccceEEEecCCCCCcceEEE
Q 008155 328 EVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEI 407 (576)
Q Consensus 328 ~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~~~~~i~~~~~~~~~~~kDyI~~Pk~nGYqSlH~~v~~~~~~~~~~~~EI 407 (576)
+|+|++|+||||++ +.+||+++|+||+.|+|+|+++||||+.||+||||||||+|. ++.+.++||
T Consensus 231 ~i~Di~~~RIi~~~-----------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~----~~~g~~~Ev 295 (683)
T TIGR00691 231 EIHDLLAIRIIVKS-----------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVR----GPKGLPVEI 295 (683)
T ss_pred HcccceeEEEEECC-----------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEE----cCCCCEEEE
Confidence 99999999999998 678999999999999999999999999999999999999997 345668999
Q ss_pred EeeCHhHHHHHhccCcccccccCCCCC----hHHHHHHHHHHH
Q 008155 408 QIRTEEMDMLAVNGTASHAFYKGGLTN----PEEAKRLKAIML 446 (576)
Q Consensus 408 QIRT~~mh~~A~~g~aah~~yk~~~~~----~~~~krL~~l~~ 446 (576)
||||..||.|||+|+|+||.||++... .....|++.++.
T Consensus 296 QIRT~~mh~~Ae~Gvaahw~yk~~~~~~~~~~~~~~wl~~~~~ 338 (683)
T TIGR00691 296 QIRTEDMDRVAEYGIAAHWIYKEGNPQKEALIDDMRWLNYLVE 338 (683)
T ss_pred EEEehHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Confidence 999999999999999999999986321 223467776654
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=2.7e-38 Score=295.89 Aligned_cols=151 Identities=30% Similarity=0.455 Sum_probs=96.7
Q ss_pred HHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHcCCCHHHHHhhhhhhccccCCCCHHHHhhhcCHHHHHHHHHhhhhh
Q 008155 89 ALKLSIPMLQSLPLSPDSRSPLTKALSVALLLADLQMDAEVISAGLLRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVK 168 (576)
Q Consensus 89 A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL~~~~~d~~~i~AalLHDvvEDt~~t~~~i~~~fG~~Va~lV~~ltk~~ 168 (576)
|+.||.++|+||.++ +|+||+.||++||.+|.++|+|+++++||||||++|||..+ ++|++.||++|+++|.++|+++
T Consensus 1 A~~~A~~~h~~~~~~-~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt~~~ 78 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRK-SGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALTKIK 78 (153)
T ss_dssp HHHHHHHHTTT-B-S-T--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHhcccCC-CCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHHhcc
Confidence 789999999988887 99999999999999999999999999999999999999656 9999999999999999999988
Q ss_pred hhhhhh-cccchHHHHHHHHHHHHhc-CCccEEeehhhhHHhhccccCCCCHHHHHHHHHHHHHHHHhHHhHhCch
Q 008155 169 NNVNLK-LQVLDDETAAALRKFCLTY-YDIRALILDLAIRLDMMRHLDYLPRYQQLMISLEVMKIHAPLAHAVATN 242 (576)
Q Consensus 169 ~~~~~~-~~~~~~~~~~~~r~~lla~-~d~rv~lIKLADrl~Nmr~l~~~~~~k~~~~a~Et~~iy~pLA~rlG~~ 242 (576)
. ++.. .......+.+.+|+||+++ .|+||++||||||+||||++...|+++++++++||+++|+|||||||||
T Consensus 79 ~-~~~~~~~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 79 K-LSKKPWEERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp T-S-HH---HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred c-cccccchhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 7 5433 1234567888999999998 8999999999999999999999999999999999999999999999998
No 7
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.96 E-value=8.9e-29 Score=238.89 Aligned_cols=139 Identities=36% Similarity=0.452 Sum_probs=116.8
Q ss_pred eEEeeccCcchHHHHHhhcCCCC------CccCCCceEEEEEecCCCCcccchhcHHHHHHHHHHHHhccccCCCcchhh
Q 008155 304 SVQGRYKSRYSTMKKLLKDGRIP------EEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDY 377 (576)
Q Consensus 304 ~v~~R~K~~~Si~~Kl~r~~~~~------~~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~~~~~i~~~~~~~~~~~kDy 377 (576)
.|++|+|++.||..|+.|+|.++ ++|+|++|+||+|.+ +.+.|.+..++.+...--....|||
T Consensus 54 ~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~F-----------~~DI~~v~~~l~~~~d~~iv~~kDy 122 (231)
T COG2357 54 HVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQF-----------VDDIYRVVDLLKSRKDFTIVEEKDY 122 (231)
T ss_pred HHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeeeh-----------HhhHHHHHHHHhcccCccchhHHHH
Confidence 69999999999999999999553 689999999999999 5569999999998766556689999
Q ss_pred hcCCCcCCCcccceEEEecCC---CCCcceEEEEeeCHhHHHHHhccCccccc-ccCCCCChHHHH-HHHHHHHHHHHHH
Q 008155 378 IARPKANGYRSLHMAVDVSDN---GKTRPLMEIQIRTEEMDMLAVNGTASHAF-YKGGLTNPEEAK-RLKAIMLAAAELA 452 (576)
Q Consensus 378 I~~Pk~nGYqSlH~~v~~~~~---~~~~~~~EIQIRT~~mh~~A~~g~aah~~-yk~~~~~~~~~k-rL~~l~~aA~elA 452 (576)
|.+||+|||||+|++|.++.. |....++||||||.+||.||+.. |.+ ||.+...|+.++ +|+.....+ ..+
T Consensus 123 i~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiE---H~l~YKy~~~~Pe~i~~el~~~a~~~-~~l 198 (231)
T COG2357 123 IRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIE---HKLRYKYGGEVPEEIKAELKRAAEAA-AGL 198 (231)
T ss_pred HhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHH---HHhhccccccChHHHHHHHHHHHHHH-HHh
Confidence 999999999999999998754 55668999999999999999999 999 999888888864 454433333 234
Q ss_pred Hhhhc
Q 008155 453 ALRLK 457 (576)
Q Consensus 453 ~~~F~ 457 (576)
+++|.
T Consensus 199 De~m~ 203 (231)
T COG2357 199 DEEMS 203 (231)
T ss_pred hHHHH
Confidence 55555
No 8
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.95 E-value=1.5e-27 Score=216.89 Aligned_cols=124 Identities=39% Similarity=0.603 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcccccccccceeEEeeccCcchHHHHHhhcCCCC---CccCCCceEEEEEecCCCCcccchhcHHHHHH
Q 008155 282 YKEQLLQCLKTDATLADLVEDVSVQGRYKSRYSTMKKLLKDGRIP---EEVNDVLGLRVIIKPSSNLVNTSEVGERACYT 358 (576)
Q Consensus 282 ~~~~l~~~l~~~~il~~~~~~~~v~~R~K~~~Si~~Kl~r~~~~~---~~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~ 358 (576)
+...+.+.|.+.++. ...+.|++|+|+++|+++|+.+++.+. ++|+|++|+||||++ ..+||.
T Consensus 3 ~~~~l~~~L~~~~~~---~~~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~-----------~~d~~~ 68 (129)
T cd05399 3 ALEEIADLLRDAGII---GRVASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF-----------VDDCYR 68 (129)
T ss_pred HHHHHHHHHHHcCCC---CCCcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC-----------HHHHHH
Confidence 345556666655541 125689999999999999999998777 999999999999998 667999
Q ss_pred HHHHHHhccccCCCcchhhhcCCCcCCCcccceEEEecCCCCCcceEEEEeeCHhHHHHHhc
Q 008155 359 TREIIQSLWKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVN 420 (576)
Q Consensus 359 ~~~~i~~~~~~~~~~~kDyI~~Pk~nGYqSlH~~v~~~~~~~~~~~~EIQIRT~~mh~~A~~ 420 (576)
++++|+..|+++|++++||++.||.|||||+|++|..+... .+.++||||||.+||+||+.
T Consensus 69 v~~~l~~~f~~~~~~~~D~~~~p~~~GYrslH~~~~~~~~~-~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 69 VLDLLHSLFKVIPGRVKDYIAEPKENGYQSLHLVVRGPEDK-AGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred HHHHHHhCCcccCccccCCcCCCCCCCceEEEEEEEcCCCc-CCcEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999875532 35689999999999999984
No 9
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.94 E-value=8.8e-28 Score=213.86 Aligned_cols=111 Identities=35% Similarity=0.516 Sum_probs=91.8
Q ss_pred eeccCcchHHHHHhhcCC---CCCccCCCceEEEEEecCCCCcccchhcHHHHHHHHHHHHhccccCCCcchhhhcCCCc
Q 008155 307 GRYKSRYSTMKKLLKDGR---IPEEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSLWKEMPHRTKDYIARPKA 383 (576)
Q Consensus 307 ~R~K~~~Si~~Kl~r~~~---~~~~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~~~~~i~~~~~~~~~~~kDyI~~Pk~ 383 (576)
+|+|+++|+++|+.|++. .+.+|+|++|+||||.+.+ +||.++++|+..|.+.+.+++|||+.|+.
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~~-----------d~~~v~~~l~~~~~~~~~~~~d~i~~~~~ 69 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFPD-----------DCYKVLGLLHKLFDVKIDRSKDYIANPKS 69 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSCC-----------HHHHHHHHHHTHSSCEEEEEEETTTT--T
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeHH-----------HHHHHHHHHHHcCCccccccccccccccc
Confidence 699999999999999874 6899999999999999954 49999999999999999999999999999
Q ss_pred CCCcccceEEEecCCCCCcceEEEEeeCHhHHHHHhccCcccccccCC
Q 008155 384 NGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKGG 431 (576)
Q Consensus 384 nGYqSlH~~v~~~~~~~~~~~~EIQIRT~~mh~~A~~g~aah~~yk~~ 431 (576)
|||||+|++|. ......+.++||||||.+||+||+.. .|+.||..
T Consensus 70 ~GYrs~H~~v~-~~~~~~~~~~EiQIrT~~~~~waei~--h~~~YK~~ 114 (115)
T PF04607_consen 70 NGYRSLHYIVP-ENESFKGYPFEIQIRTLLQHAWAEIE--HDLRYKSS 114 (115)
T ss_dssp TS--EEEEEEE-ETTECEEEEEEEEEEEHHHHHHHHHH--HHHHHHCT
T ss_pred CCcEeeEeeee-ecccCCCceeeeeeccHHHHHHHHHH--HHHhCCCC
Confidence 99999999993 22345567899999999999999944 34559974
No 10
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.43 E-value=6.4e-13 Score=124.05 Aligned_cols=104 Identities=29% Similarity=0.496 Sum_probs=90.7
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccC-CCHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLE-DRDDEY 546 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~-~~~~e~ 546 (576)
..+..+|+.||+|++|+|+..||..++..+|. +..++..++..+|.+++|.|+|+||+.++.......... ...+++
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el 87 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEEL 87 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHH
Confidence 56889999999999999999999999999998 689999999999999999999999999998654111111 135699
Q ss_pred HHHHhHHhhccCCCccccH-----HHHHhcccCC
Q 008155 547 RTMLDEKLQMAGDSGLIQV-----YSTELGNRLA 575 (576)
Q Consensus 547 ~~~f~~~~~Dkd~dG~It~-----~l~~lG~~Ls 575 (576)
+.+| .+||+|++|+||. ++..+|.+++
T Consensus 88 ~eaF--~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 88 KEAF--RVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred HHHH--HHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 9999 7899999999999 8888999876
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=121.66 Aligned_cols=100 Identities=24% Similarity=0.409 Sum_probs=91.5
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYR 547 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~ 547 (576)
++++++|..+|.|++|.|+.+||..+|+.+|. ++..+.+++..+|. +.|.|+|.+|+.++.... +..+..++++
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~---~~~~~~Eel~ 95 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL---KRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh---ccCCcHHHHH
Confidence 67999999999999999999999999999998 78999999999999 899999999999999633 2357789999
Q ss_pred HHHhHHhhccCCCccccH-----HHHHhcccCC
Q 008155 548 TMLDEKLQMAGDSGLIQV-----YSTELGNRLA 575 (576)
Q Consensus 548 ~~f~~~~~Dkd~dG~It~-----~l~~lG~~Ls 575 (576)
.+| +.||+|+||+|+. +++++|++++
T Consensus 96 ~aF--~~fD~d~dG~Is~~eL~~vl~~lge~~~ 126 (160)
T COG5126 96 EAF--KLFDKDHDGYISIGELRRVLKSLGERLS 126 (160)
T ss_pred HHH--HHhCCCCCceecHHHHHHHHHhhcccCC
Confidence 999 8899999999999 8999999875
No 12
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.4e-10 Score=105.98 Aligned_cols=103 Identities=23% Similarity=0.378 Sum_probs=92.3
Q ss_pred cccchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHH
Q 008155 468 EFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDE 545 (576)
Q Consensus 468 ~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e 545 (576)
..+.+..+|..||.+++|+|+.+||.-++..+|+ ..+++.+++..+|.++.|.|+|++|...+.... .. .++.++
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~--~e-~dt~eE 107 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL--GE-RDTKEE 107 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH--hc-cCcHHH
Confidence 3468999999999999999999999999999999 578899999999999999999999999988643 22 358899
Q ss_pred HHHHHhHHhhccCCCccccH-----HHHHhcccCC
Q 008155 546 YRTMLDEKLQMAGDSGLIQV-----YSTELGNRLA 575 (576)
Q Consensus 546 ~~~~f~~~~~Dkd~dG~It~-----~l~~lG~~Ls 575 (576)
++.+| +.+|-|++|.|+. ++++||++|+
T Consensus 108 i~~af--rl~D~D~~Gkis~~~lkrvakeLgenlt 140 (172)
T KOG0028|consen 108 IKKAF--RLFDDDKTGKISQRNLKRVAKELGENLT 140 (172)
T ss_pred HHHHH--HcccccCCCCcCHHHHHHHHHHhCcccc
Confidence 99999 7799999999999 8899999875
No 13
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.01 E-value=9.6e-10 Score=98.24 Aligned_cols=103 Identities=22% Similarity=0.311 Sum_probs=90.8
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCC--CCCcccHHHHHHHHHHHHhhhccCCCHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSN--SDGSLSSDEFDLFQKQVEFMRNLEDRDDE 545 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n--~dG~Isf~EF~~~l~~v~~~~~~~~~~~e 545 (576)
..++++|..||..+||+|+..+...+|+.+|. ++.++.+.....+.+ +--+|+|++|+.++.++.. .+...+.++
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak-nk~q~t~ed 89 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK-NKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh-ccccCcHHH
Confidence 67889999999999999999999999999998 688899998888776 4478999999999998762 233577889
Q ss_pred HHHHHhHHhhccCCCccccH-----HHHHhcccCC
Q 008155 546 YRTMLDEKLQMAGDSGLIQV-----YSTELGNRLA 575 (576)
Q Consensus 546 ~~~~f~~~~~Dkd~dG~It~-----~l~~lG~~Ls 575 (576)
+...+ ..||++++|.|.. ++.++|++|+
T Consensus 90 fvegL--rvFDkeg~G~i~~aeLRhvLttlGekl~ 122 (152)
T KOG0030|consen 90 FVEGL--RVFDKEGNGTIMGAELRHVLTTLGEKLT 122 (152)
T ss_pred HHHHH--HhhcccCCcceeHHHHHHHHHHHHhhcc
Confidence 99999 7799999999999 9999999987
No 14
>PTZ00183 centrin; Provisional
Probab=99.01 E-value=2.4e-09 Score=99.61 Aligned_cols=100 Identities=25% Similarity=0.386 Sum_probs=64.2
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYR 547 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~ 547 (576)
..+..+|..+|.+++|.|+.+||..++..+|. +...+..++..+|.+++|.|+|+||+.++.... ......+++.
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---~~~~~~~~l~ 93 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL---GERDPREEIL 93 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh---cCCCcHHHHH
Confidence 34666677777777777777777777776664 455677777777777777777777776655421 1123345666
Q ss_pred HHHhHHhhccCCCccccH-----HHHHhcccC
Q 008155 548 TMLDEKLQMAGDSGLIQV-----YSTELGNRL 574 (576)
Q Consensus 548 ~~f~~~~~Dkd~dG~It~-----~l~~lG~~L 574 (576)
.+| +.+|+|++|.|+. ++..+|.++
T Consensus 94 ~~F--~~~D~~~~G~i~~~e~~~~l~~~~~~l 123 (158)
T PTZ00183 94 KAF--RLFDDDKTGKISLKNLKRVAKELGETI 123 (158)
T ss_pred HHH--HHhCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 677 5577777777777 444455444
No 15
>PTZ00184 calmodulin; Provisional
Probab=98.92 E-value=6.5e-09 Score=95.35 Aligned_cols=100 Identities=28% Similarity=0.473 Sum_probs=72.0
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYR 547 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~ 547 (576)
+.+...|..+|.+++|.|+.+||..++..++. +.+.+..++..+|.+++|.|+|+||+.++.... ......+.+.
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~---~~~~~~~~~~ 87 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM---KDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc---cCCcHHHHHH
Confidence 45677888888888888888888888877765 456788888888888888888888887766421 1123345677
Q ss_pred HHHhHHhhccCCCccccH-----HHHHhcccC
Q 008155 548 TMLDEKLQMAGDSGLIQV-----YSTELGNRL 574 (576)
Q Consensus 548 ~~f~~~~~Dkd~dG~It~-----~l~~lG~~L 574 (576)
.+| +.+|+|++|.|+. ++..+|..+
T Consensus 88 ~~F--~~~D~~~~g~i~~~e~~~~l~~~~~~~ 117 (149)
T PTZ00184 88 EAF--KVFDRDGNGFISAAELRHVMTNLGEKL 117 (149)
T ss_pred HHH--HhhCCCCCCeEeHHHHHHHHHHHCCCC
Confidence 788 6688888888887 444445443
No 16
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.85 E-value=1e-08 Score=98.71 Aligned_cols=95 Identities=25% Similarity=0.392 Sum_probs=86.6
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA---PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEY 546 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~ 546 (576)
..+...|...|.|+.|.|+.+||+..|...+. +.+.++-|+..+|.+.+|.|+|.||..+|..+. +|
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~----------~W 126 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN----------QW 126 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----------HH
Confidence 67889999999999999999999999986544 689999999999999999999999999999866 89
Q ss_pred HHHHhHHhhccCCCccccH-----HHHHhcccCCC
Q 008155 547 RTMLDEKLQMAGDSGLIQV-----YSTELGNRLAS 576 (576)
Q Consensus 547 ~~~f~~~~~Dkd~dG~It~-----~l~~lG~~Ls~ 576 (576)
+.+| +-||+|++|.|+. .+..+|..||+
T Consensus 127 r~vF--~~~D~D~SG~I~~sEL~~Al~~~Gy~Lsp 159 (221)
T KOG0037|consen 127 RNVF--RTYDRDRSGTIDSSELRQALTQLGYRLSP 159 (221)
T ss_pred HHHH--HhcccCCCCcccHHHHHHHHHHcCcCCCH
Confidence 9999 5599999999999 88889998874
No 17
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.84 E-value=1.6e-08 Score=91.96 Aligned_cols=97 Identities=25% Similarity=0.340 Sum_probs=83.5
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYR 547 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~ 547 (576)
++++++|.++|+|+||.|+.++|+..+..+|. ++++++.++... .|.|+|.-|+.+...-. .+ .+.++-+.
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL--~g-tdpe~~I~ 104 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKL--NG-TDPEEVIL 104 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHh--cC-CCHHHHHH
Confidence 67889999999999999999999999999998 789999999874 68999999999888522 22 35566789
Q ss_pred HHHhHHhhccCCCccccH-----HHHHhcccCC
Q 008155 548 TMLDEKLQMAGDSGLIQV-----YSTELGNRLA 575 (576)
Q Consensus 548 ~~f~~~~~Dkd~dG~It~-----~l~~lG~~Ls 575 (576)
.+| +.||.+++|+|.. +|.+.|++++
T Consensus 105 ~AF--~~FD~~~~G~I~~d~lre~Ltt~gDr~~ 135 (171)
T KOG0031|consen 105 NAF--KTFDDEGSGKIDEDYLRELLTTMGDRFT 135 (171)
T ss_pred HHH--HhcCccCCCccCHHHHHHHHHHhcccCC
Confidence 999 7799999999999 6677788876
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.84 E-value=5.5e-09 Score=83.15 Aligned_cols=60 Identities=37% Similarity=0.581 Sum_probs=53.2
Q ss_pred chhhhhhcccCCCCCccCHHHHHHHHHHcCC--C----hHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEVMEELGA--P----GEDAREMMQLLDSNSDGSLSSDEFDLFQ 530 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~----~~~v~~l~~~~D~n~dG~Isf~EF~~~l 530 (576)
+++++|+.+|+|++|+|+.+||..++..++. + .+.++.+|..+|.|+||.|+|+||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3678999999999999999999999999986 2 3456777999999999999999999874
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.81 E-value=7.9e-09 Score=87.66 Aligned_cols=65 Identities=25% Similarity=0.291 Sum_probs=59.1
Q ss_pred cchhhhhhcccC-CCCCccCHHHHHHHHHH-cCC--Ch-HHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDK-NGDGRISIEELMEVMEE-LGA--PG-EDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~-d~dG~Is~~EL~~~L~~-lg~--~~-~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+..+|+.||. +++|+|+.+||+.+|.. +|. +. ++++++|+.+|.|+||.|+|+||+.++..+-
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 457899999999 99999999999999998 875 56 8999999999999999999999999888653
No 20
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.81 E-value=1e-08 Score=95.61 Aligned_cols=64 Identities=33% Similarity=0.572 Sum_probs=61.0
Q ss_pred cccchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 468 EFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 468 ~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
..+++.++|+.||+|+||+|+..||..+++.+|. ++++++.++..+|.|+||.|+|++|.+.+.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 4689999999999999999999999999999998 799999999999999999999999998776
No 21
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.80 E-value=1.8e-08 Score=96.93 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=92.7
Q ss_pred HHHHhhhcCCCCCCCCCc----------cccchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCC
Q 008155 450 ELAALRLKDIPSTNHKGF----------EFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNS 517 (576)
Q Consensus 450 elA~~~F~~~d~~~~~~i----------~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~ 517 (576)
+.++.+..-||.+..|++ .-..++.+|+.||.|++|.|+..||+.+|..+|. +++..+.+++.+|.-+
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~ 173 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFG 173 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcccc
Confidence 567777888888888876 3468899999999999999999999999999998 8899999999999888
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 518 DGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 518 dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+|.|.|++|+.+|-.+. .+.++|++ +|.+.+|.|+.
T Consensus 174 ~g~i~FD~FI~ccv~L~----------~lt~~Fr~--~D~~q~G~i~~ 209 (221)
T KOG0037|consen 174 GGRIDFDDFIQCCVVLQ----------RLTEAFRR--RDTAQQGSITI 209 (221)
T ss_pred CCceeHHHHHHHHHHHH----------HHHHHHHH--hccccceeEEE
Confidence 99999999999999865 67888955 99999999998
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.69 E-value=3.9e-08 Score=83.34 Aligned_cols=65 Identities=29% Similarity=0.391 Sum_probs=58.4
Q ss_pred cchhhhhhccc-CCCCC-ccCHHHHHHHHHH-----cCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLD-KNGDG-RISIEELMEVMEE-----LGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D-~d~dG-~Is~~EL~~~L~~-----lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+.++|+.|| .|++| +|+.+||+.+|.. +|. ++++++++++.+|.|+||.|+|+||+.++..+-
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 46789999998 79999 5999999999998 776 678899999999999999999999999888643
No 23
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.68 E-value=6e-08 Score=76.93 Aligned_cols=61 Identities=33% Similarity=0.570 Sum_probs=57.2
Q ss_pred hhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 008155 473 DRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQV 533 (576)
Q Consensus 473 ~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v 533 (576)
+++|..+|+|++|.|+.+|+..++..+|.+.+.++.++..+|.+++|.|+|+||+.++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999999888999999999999999999999999988754
No 24
>PTZ00183 centrin; Provisional
Probab=98.63 E-value=3.5e-07 Score=84.91 Aligned_cols=95 Identities=21% Similarity=0.376 Sum_probs=78.2
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcC--C-ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELG--A-PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEY 546 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg--~-~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~ 546 (576)
..+..+|..+|.+++|.|+.+||..++.... . ..+.++.+|+.+|.+++|.|+.+||..++.... ...+..++
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~----~~l~~~~~ 128 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG----ETITDEEL 128 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC----CCCCHHHH
Confidence 4577889999999999999999999876532 1 567899999999999999999999999988532 23567788
Q ss_pred HHHHhHHhhccCCCccccH--HHHHh
Q 008155 547 RTMLDEKLQMAGDSGLIQV--YSTEL 570 (576)
Q Consensus 547 ~~~f~~~~~Dkd~dG~It~--~l~~l 570 (576)
...| ..+|.|++|.|+. +..-+
T Consensus 129 ~~~~--~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 129 QEMI--DEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHH--HHhCCCCCCcCcHHHHHHHH
Confidence 8999 6799999999998 54443
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.60 E-value=1.7e-07 Score=87.40 Aligned_cols=105 Identities=21% Similarity=0.401 Sum_probs=78.4
Q ss_pred hhcCCCCCCCCCc----------------cccchhhhhhcccCCCCCccCHHHHHHHHHHcCC---C----hHHHHHHHH
Q 008155 455 RLKDIPSTNHKGF----------------EFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA---P----GEDAREMMQ 511 (576)
Q Consensus 455 ~F~~~d~~~~~~i----------------~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~----~~~v~~l~~ 511 (576)
.|..||.++.|.| +...+..++..+|.|++|.|+.+||..++...+. . .+++.+.|+
T Consensus 13 ~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~ 92 (151)
T KOG0027|consen 13 AFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFR 92 (151)
T ss_pred HHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHH
Confidence 4555666666554 4567888888888888888888888888877654 1 237888888
Q ss_pred hhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 512 LLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 512 ~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.+|.|++|.|+.+||..++..+. . ..+.++....+ .-.|.|+||.|+.
T Consensus 93 ~fD~d~~G~Is~~el~~~l~~lg--~--~~~~~e~~~mi--~~~d~d~dg~i~f 140 (151)
T KOG0027|consen 93 VFDKDGDGFISASELKKVLTSLG--E--KLTDEECKEMI--REVDVDGDGKVNF 140 (151)
T ss_pred HHccCCCCcCcHHHHHHHHHHhC--C--cCCHHHHHHHH--HhcCCCCCCeEeH
Confidence 88888888888888888888754 2 24466777777 4478888888876
No 26
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.58 E-value=1.1e-07 Score=81.71 Aligned_cols=65 Identities=29% Similarity=0.450 Sum_probs=61.0
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+..+|..+|.|++|.|+.+||..+|...|.++++++.++..+|.+++|.|+|+||+.++..+.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 56889999999999999999999999999998999999999999999999999999999988765
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.56 E-value=1.4e-07 Score=80.85 Aligned_cols=65 Identities=29% Similarity=0.396 Sum_probs=56.0
Q ss_pred cchhhhhhccc-CCCCC-ccCHHHHHHHHHH-cC----C--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLD-KNGDG-RISIEELMEVMEE-LG----A--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D-~d~dG-~Is~~EL~~~L~~-lg----~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+.++|+.|| +|++| +||.+||+.+|.. ++ . ++.+++++++.+|.|+||.|+|+||+.++..+-
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 45778899999 78998 5999999999976 32 1 567899999999999999999999999988653
No 28
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.53 E-value=2.2e-07 Score=96.72 Aligned_cols=96 Identities=24% Similarity=0.392 Sum_probs=84.0
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGA---PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDE 545 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e 545 (576)
+.+++..|+.||.+++|.++..++.+.+..++. +.+..+.+++.+|.|.||.++|.||.+++.. .+.+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~---------~E~~ 83 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN---------KELE 83 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH---------hHHH
Confidence 357889999999999999999999999999876 3567888999999999999999999998873 3457
Q ss_pred HHHHHhHHhhccCCCccccH-----HHHHhcccCC
Q 008155 546 YRTMLDEKLQMAGDSGLIQV-----YSTELGNRLA 575 (576)
Q Consensus 546 ~~~~f~~~~~Dkd~dG~It~-----~l~~lG~~Ls 575 (576)
+...| +-.|.++||.|.. +++.+|.+|+
T Consensus 84 l~~~F--~~iD~~hdG~i~~~Ei~~~l~~~gi~l~ 116 (463)
T KOG0036|consen 84 LYRIF--QSIDLEHDGKIDPNEIWRYLKDLGIQLS 116 (463)
T ss_pred HHHHH--hhhccccCCccCHHHHHHHHHHhCCccC
Confidence 78888 6689999999999 8899998876
No 29
>PLN02964 phosphatidylserine decarboxylase
Probab=98.52 E-value=3.3e-07 Score=102.98 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=74.2
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcC-C--ChHH---HHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELG-A--PGED---AREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRD 543 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg-~--~~~~---v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~ 543 (576)
+.+.++|..+|+|++|++ +..++..+| . ++++ ++++|..+|.|++|.|+|+||+.++..+. .....
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg----~~~se 214 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG----NLVAA 214 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc----cCCCH
Confidence 567899999999999997 888999999 3 3443 79999999999999999999999998632 23567
Q ss_pred HHHHHHHhHHhhccCCCccccH
Q 008155 544 DEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 544 ~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+++..+| ..+|+|++|+|+.
T Consensus 215 EEL~eaF--k~fDkDgdG~Is~ 234 (644)
T PLN02964 215 NKKEELF--KAADLNGDGVVTI 234 (644)
T ss_pred HHHHHHH--HHhCCCCCCcCCH
Confidence 8899999 7799999999999
No 30
>PTZ00184 calmodulin; Provisional
Probab=98.51 E-value=9.1e-07 Score=80.99 Aligned_cols=91 Identities=19% Similarity=0.313 Sum_probs=76.0
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGA---PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDE 545 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e 545 (576)
.+.+..+|..+|.+++|.|+.+||..++..... ....+..+|..+|.+++|.|+.+||..++..+. .....++
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~----~~~~~~~ 121 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG----EKLTDEE 121 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC----CCCCHHH
Confidence 356788999999999999999999998876422 456788999999999999999999999988642 2356677
Q ss_pred HHHHHhHHhhccCCCccccH
Q 008155 546 YRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 546 ~~~~f~~~~~Dkd~dG~It~ 565 (576)
+...| ..+|.+++|.|+.
T Consensus 122 ~~~~~--~~~d~~~~g~i~~ 139 (149)
T PTZ00184 122 VDEMI--READVDGDGQINY 139 (149)
T ss_pred HHHHH--HhcCCCCCCcCcH
Confidence 88888 5589999999998
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.50 E-value=2.2e-07 Score=79.63 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=57.1
Q ss_pred cchhhhhhcccC-CC-CCccCHHHHHHHHHH-----cCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDK-NG-DGRISIEELMEVMEE-----LGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~-d~-dG~Is~~EL~~~L~~-----lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+..+|..||. |+ +|+|+.+||+.+|.. +|. ++++++.++..+|.|++|.|+|+||+.++....
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 467899999997 97 699999999999986 343 678999999999999999999999999888654
No 32
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.49 E-value=2.7e-07 Score=89.00 Aligned_cols=87 Identities=28% Similarity=0.430 Sum_probs=75.3
Q ss_pred HHHHHHHHhhhcCCCCCCCCCc----------------cccchhhhhhcccCCCCCccCHHHHHHHHHHc----CC----
Q 008155 446 LAAAELAALRLKDIPSTNHKGF----------------EFDWRDRVFRLLDKNGDGRISIEELMEVMEEL----GA---- 501 (576)
Q Consensus 446 ~aA~elA~~~F~~~d~~~~~~i----------------~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~l----g~---- 501 (576)
..+..++...|..||.+++|.| .++.+..+|+++|.||||+|+.+|+..++... |.
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC
Confidence 5667789999999999999887 46788899999999999999999999987663 32
Q ss_pred -----ChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 502 -----PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 502 -----~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
+.+.++.+|+.+|.|+||.||++||...+..
T Consensus 140 ~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 140 EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 2566899999999999999999999988774
No 33
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.48 E-value=2.3e-07 Score=79.19 Aligned_cols=65 Identities=26% Similarity=0.447 Sum_probs=57.1
Q ss_pred cchhhhhhccc-CCCCC-ccCHHHHHHHHHH-cCC------ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLD-KNGDG-RISIEELMEVMEE-LGA------PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D-~d~dG-~Is~~EL~~~L~~-lg~------~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
+.+.++|+.|| .+++| .|+.+||+.+|+. +|. +.++++.++..+|.|++|.|+|+||+.++..+-
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 56889999997 99999 5999999999975 442 578899999999999999999999999888643
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.43 E-value=4.8e-07 Score=76.66 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=56.5
Q ss_pred chhhhhhcccC-CC-CCccCHHHHHHHHHH---cCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 471 WRDRVFRLLDK-NG-DGRISIEELMEVMEE---LGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 471 ~l~~~F~~~D~-d~-dG~Is~~EL~~~L~~---lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
.+-.+|..||. || +|+|+.+||+.+|.. +|. ++++++++++.+|.|++|.|+|+||+.++..+.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 46688999997 77 899999999999973 565 789999999999999999999999999888654
No 35
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.41 E-value=7e-07 Score=86.14 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=75.9
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcc------CC
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNL------ED 541 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~------~~ 541 (576)
.-...+|+.||.|+||.|+..||...+..+.. .++.++..|+.+|.|+||.|+++|++.++..+-.+.+. ..
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 45778999999999999999999988877643 57888899999999999999999999998877544332 11
Q ss_pred -CHHHHHHHHhHHhhccCCCccccH
Q 008155 542 -RDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 542 -~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
..+....+| +-+|+|+||.||.
T Consensus 144 ~~~~~v~~if--~k~D~n~Dg~lT~ 166 (193)
T KOG0044|consen 144 TPEERVDKIF--SKMDKNKDGKLTL 166 (193)
T ss_pred cHHHHHHHHH--HHcCCCCCCcccH
Confidence 223445677 5579999999998
No 36
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.38 E-value=5.6e-07 Score=80.15 Aligned_cols=61 Identities=30% Similarity=0.328 Sum_probs=54.8
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
...+..+|..+|.|+||.||.+||..+. ++..+..+..+|..+|.|+||.||++||..++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3678999999999999999999999876 555677889999999999999999999999884
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.33 E-value=1.1e-06 Score=74.53 Aligned_cols=65 Identities=29% Similarity=0.310 Sum_probs=55.9
Q ss_pred cchhhhhhc-ccCCCCC-ccCHHHHHHHHHHcC-------CChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRL-LDKNGDG-RISIEELMEVMEELG-------APGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~-~D~d~dG-~Is~~EL~~~L~~lg-------~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+..+|+. +|.+|+| +||.+||+.++.... ..+..+++++..+|.|+||.|+|+||+.++..+-
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 457789999 7888986 999999999998752 2467899999999999999999999999888653
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.31 E-value=1.3e-06 Score=73.78 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=57.3
Q ss_pred cchhhhhhcccC--CCCCccCHHHHHHHHHH-cCC------ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDK--NGDGRISIEELMEVMEE-LGA------PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~--d~dG~Is~~EL~~~L~~-lg~------~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
+.+..+|..||. |++|.|+.+||..++.. +|. +..+++.++..+|.|++|.|+|+||+.++....
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 467889999999 89999999999999976 443 378899999999999999999999999888643
No 39
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.26 E-value=2.8e-06 Score=64.86 Aligned_cols=59 Identities=37% Similarity=0.651 Sum_probs=53.9
Q ss_pred hhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 008155 472 RDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQ 530 (576)
Q Consensus 472 l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l 530 (576)
+..+|..+|.+++|.|+.+|+..++..++. +.+.+..++..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999999876 67888999999999999999999998764
No 40
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=6.3e-06 Score=75.84 Aligned_cols=91 Identities=23% Similarity=0.414 Sum_probs=73.7
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHH-cCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEE-LGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDE 545 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~-lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e 545 (576)
.+++.++..-+|+++.|.|+.++|...+.. ++. +.+++...|+.+|.+++|.||+.+|..++..+. . ..++++
T Consensus 68 k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg--e--nltD~E 143 (172)
T KOG0028|consen 68 KEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG--E--NLTDEE 143 (172)
T ss_pred hHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC--c--cccHHH
Confidence 355666777788899999999999998654 444 788899999999999999999999998888764 2 367778
Q ss_pred HHHHHhHHhhccCCCccccH
Q 008155 546 YRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 546 ~~~~f~~~~~Dkd~dG~It~ 565 (576)
+.....+ +|.|++|-|+.
T Consensus 144 l~eMIeE--Ad~d~dgevne 161 (172)
T KOG0028|consen 144 LMEMIEE--ADRDGDGEVNE 161 (172)
T ss_pred HHHHHHH--hcccccccccH
Confidence 8877755 89999999987
No 41
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.21 E-value=4.9e-06 Score=79.19 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=57.6
Q ss_pred hhcCCCCCCCCC--ChhHHHHHHHHHHHHcCCCHHHHHhhhhhhc---cccCC--------------CCHHHHhhhcCHH
Q 008155 96 MLQSLPLSPDSR--SPLTKALSVALLLADLQMDAEVISAGLLRQV---VESGG--------------VSIQQVRDRIGIG 156 (576)
Q Consensus 96 ~h~gq~rk~~g~--pyi~H~l~Va~iL~~~~~d~~~i~AalLHDv---vEDt~--------------~t~~~i~~~fG~~ 156 (576)
.|.++.. +|+ |++.|++.+|.+....|.|.+.|+||||||+ ++|+. +..+.|+..||++
T Consensus 13 ~~g~~~y--~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~ 90 (179)
T TIGR03276 13 EHGARQY--GGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPS 90 (179)
T ss_pred hcCcccc--CCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHH
Confidence 3444433 555 5899999999998899999999999999998 77643 2257789999999
Q ss_pred HHHHHHHhhhhhh
Q 008155 157 TAHLLHESLRVKN 169 (576)
Q Consensus 157 Va~lV~~ltk~~~ 169 (576)
|+++|..-..-+.
T Consensus 91 V~~lV~~Hv~aKr 103 (179)
T TIGR03276 91 VTEPIRLHVQAKR 103 (179)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998776554
No 42
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.18 E-value=3.9e-06 Score=63.97 Aligned_cols=50 Identities=30% Similarity=0.551 Sum_probs=45.3
Q ss_pred CCCccCHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 483 GDGRISIEELMEVMEELGA---PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 483 ~dG~Is~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
.+|.|+.++|+.+|..+|. ++++++.+|..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999987764 6888999999999999999999999998863
No 43
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.04 E-value=1.5e-05 Score=76.85 Aligned_cols=89 Identities=20% Similarity=0.349 Sum_probs=73.7
Q ss_pred cchhhhhhcccCC-CCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHHHhhhccCCCHHHHH
Q 008155 470 DWRDRVFRLLDKN-GDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGS-LSSDEFDLFQKQVEFMRNLEDRDDEYR 547 (576)
Q Consensus 470 ~~l~~~F~~~D~d-~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~-Isf~EF~~~l~~v~~~~~~~~~~~e~~ 547 (576)
..+...|..+|.+ ++|.++.+||..+.... .+...+.++..++.+++|. |+|++|++.+.... +.....+.++
T Consensus 33 ~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~--~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~---~~~~~~~Kl~ 107 (187)
T KOG0034|consen 33 ERLYERFKKLDRNNGDGYLTKEEFLSIPELA--LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFS---PKASKREKLR 107 (187)
T ss_pred HHHHHHHHHhccccccCccCHHHHHHHHHHh--cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhc---CCccHHHHHH
Confidence 5688889999999 99999999999998332 3446678999999999988 99999999999643 2233345888
Q ss_pred HHHhHHhhccCCCccccH
Q 008155 548 TMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 548 ~~f~~~~~Dkd~dG~It~ 565 (576)
-+| ++||.|++|+|+.
T Consensus 108 faF--~vYD~~~~G~I~r 123 (187)
T KOG0034|consen 108 FAF--RVYDLDGDGFISR 123 (187)
T ss_pred HHH--HHhcCCCCCcCcH
Confidence 899 8899999999999
No 44
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.01 E-value=4e-05 Score=73.91 Aligned_cols=93 Identities=20% Similarity=0.426 Sum_probs=72.3
Q ss_pred cchhhhhhcccCCCCCc-cCHHHHHHHHHHcCC--C-hHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCC--H
Q 008155 470 DWRDRVFRLLDKNGDGR-ISIEELMEVMEELGA--P-GEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDR--D 543 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~-Is~~EL~~~L~~lg~--~-~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~--~ 543 (576)
....++|+.||.+++|. |+.++|...+..+.. + .+.++-.|+.+|.+++|.|+.+|+..++..+. . ..+. +
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~--~-~~~~~~~ 142 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV--G-ENDDMSD 142 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH--c-cCCcchH
Confidence 45667888999999998 999999999988765 3 44888899999999999999999999988643 2 1222 4
Q ss_pred HHHHHHHhHHh--hccCCCccccH
Q 008155 544 DEYRTMLDEKL--QMAGDSGLIQV 565 (576)
Q Consensus 544 ~e~~~~f~~~~--~Dkd~dG~It~ 565 (576)
++...+....+ +|.|+||.|+.
T Consensus 143 e~~~~i~d~t~~e~D~d~DG~Isf 166 (187)
T KOG0034|consen 143 EQLEDIVDKTFEEADTDGDGKISF 166 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcH
Confidence 44444443332 49999999999
No 45
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=6.7e-06 Score=83.74 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=66.6
Q ss_pred chhhhhhcccCCCCCccCHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHH
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEVMEELGA---PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYR 547 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~ 547 (576)
+-++.|+..|.|+||.++.+||..+|..--. .+--+.+-+..+|+|+||+|+++||+.=+..-. . ...+++|.
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~--~--~~~epeWv 239 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE--G--NEEEPEWV 239 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc--C--CCCCcccc
Confidence 4567899999999999999999998754322 244578889999999999999999998666422 1 23333332
Q ss_pred HHHhH---HhhccCCCccccH
Q 008155 548 TMLDE---KLQMAGDSGLIQV 565 (576)
Q Consensus 548 ~~f~~---~~~Dkd~dG~It~ 565 (576)
..=++ .++|+|+||+++.
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~ 260 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDG 260 (325)
T ss_pred cccHHHHHHHhhcCCCCccCH
Confidence 22222 3459999999987
No 46
>PF14658 EF-hand_9: EF-hand domain
Probab=97.97 E-value=1.9e-05 Score=62.57 Aligned_cols=59 Identities=19% Similarity=0.447 Sum_probs=54.4
Q ss_pred hhhhcccCCCCCccCHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCC-CcccHHHHHHHHHH
Q 008155 474 RVFRLLDKNGDGRISIEELMEVMEELGA---PGEDAREMMQLLDSNSD-GSLSSDEFDLFQKQ 532 (576)
Q Consensus 474 ~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~d-G~Isf~EF~~~l~~ 532 (576)
.+|..||.++.|.|...++..+|+.++. ++.+++.+...+|+++. |.|+|+.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999887 57889999999999988 99999999998873
No 47
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.93 E-value=1.9e-05 Score=66.90 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=53.9
Q ss_pred cchhhhhhcccCC--CCCccCHHHHHHHHH-HcCC--C----hHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKN--GDGRISIEELMEVME-ELGA--P----GEDAREMMQLLDSNSDGSLSSDEFDLFQKQV 533 (576)
Q Consensus 470 ~~l~~~F~~~D~d--~dG~Is~~EL~~~L~-~lg~--~----~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v 533 (576)
..+-..|+.++.+ ++|+|+.+||+.+|. .+|. + +.+++.+|..+|.|++|.|+|+||+.++..+
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456788888865 479999999999997 4443 4 7889999999999999999999999988864
No 48
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.74 E-value=4.3e-05 Score=72.71 Aligned_cols=64 Identities=33% Similarity=0.498 Sum_probs=57.3
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQV 533 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v 533 (576)
+.+...|+.+|.+.||+|+..||+.+|+.||. +.--++.++...|.|.||+|||.||+-+....
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 45678899999999999999999999999998 45668999999999999999999998877654
No 49
>PLN02964 phosphatidylserine decarboxylase
Probab=97.72 E-value=8.5e-05 Score=83.86 Aligned_cols=61 Identities=23% Similarity=0.502 Sum_probs=57.4
Q ss_pred hhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 472 RDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 472 l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
+.++|+.+|.|++|.|+.+||..+|..++. +++++.++|+.+|.|++|.|+++||..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 789999999999999999999999998875 6888999999999999999999999998876
No 50
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.00014 Score=76.36 Aligned_cols=113 Identities=15% Similarity=0.228 Sum_probs=83.0
Q ss_pred HHHHHHhhhcCCCCCCCCCc-----------cccchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhC
Q 008155 448 AAELAALRLKDIPSTNHKGF-----------EFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLD 514 (576)
Q Consensus 448 A~elA~~~F~~~d~~~~~~i-----------~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D 514 (576)
..+.+...|...|.+.++.+ .+.++.+.|+..|.++||.|+.+|+...|..+|. +++.++++++.+|
T Consensus 49 ~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d 128 (463)
T KOG0036|consen 49 NYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMD 128 (463)
T ss_pred chHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhc
Confidence 34566677888888888765 5678888999999999999999999999999987 7888889999999
Q ss_pred CCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhH-HhhccCCCccccH
Q 008155 515 SNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDE-KLQMAGDSGLIQV 565 (576)
Q Consensus 515 ~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~-~~~Dkd~dG~It~ 565 (576)
.++++.|+++||..++.... . .+-+.+..-++. .++|-..+..|..
T Consensus 129 ~~g~~~I~~~e~rd~~ll~p-~----s~i~di~~~W~h~~~idigE~~~iPd 175 (463)
T KOG0036|consen 129 KDGKATIDLEEWRDHLLLYP-E----SDLEDIYDFWRHVLLIDIGEDAVLPD 175 (463)
T ss_pred cCCCeeeccHHHHhhhhcCC-h----hHHHHHHHhhhhheEEEccccccCCc
Confidence 99999999999988877422 1 111222111211 3457777777765
No 51
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.60 E-value=0.00016 Score=66.30 Aligned_cols=65 Identities=20% Similarity=0.369 Sum_probs=60.3
Q ss_pred cccchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 468 EFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 468 ~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
.++.+..+|+.||.+++|.|..+.|+++|...|- ++++++.++..+-.+..|.++|.+|+..+..
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 5688999999999999999999999999999887 8999999999999999999999999988873
No 52
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.55 E-value=4.1e-05 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=14.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 506 AREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 506 v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
++++|+.+|.|+||.|+++||..++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 44555555555555555555555544
No 53
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.50 E-value=0.00012 Score=48.60 Aligned_cols=28 Identities=46% Similarity=0.828 Sum_probs=25.8
Q ss_pred hhhhhhcccCCCCCccCHHHHHHHHHHc
Q 008155 472 RDRVFRLLDKNGDGRISIEELMEVMEEL 499 (576)
Q Consensus 472 l~~~F~~~D~d~dG~Is~~EL~~~L~~l 499 (576)
+.++|+.+|+|+||+|+.+||..+|..|
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 6789999999999999999999998764
No 54
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00014 Score=74.20 Aligned_cols=108 Identities=23% Similarity=0.280 Sum_probs=73.9
Q ss_pred hhcCCCCCCCCCcc----------------ccchhhhhhcccCCCCCccCHHHHHHHHHHcC------C---Ch------
Q 008155 455 RLKDIPSTNHKGFE----------------FDWRDRVFRLLDKNGDGRISIEELMEVMEELG------A---PG------ 503 (576)
Q Consensus 455 ~F~~~d~~~~~~i~----------------~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg------~---~~------ 503 (576)
.+..+|++++|.++ .+...+.|..+|.|.||.|+++|....+.... . ..
T Consensus 82 l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km 161 (325)
T KOG4223|consen 82 LVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKM 161 (325)
T ss_pred HHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHH
Confidence 45555666666662 23445567788999999999999988776421 1 11
Q ss_pred -HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhH-Hh--hccCCCccccH--HHHHh
Q 008155 504 -EDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDE-KL--QMAGDSGLIQV--YSTEL 570 (576)
Q Consensus 504 -~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~-~~--~Dkd~dG~It~--~l~~l 570 (576)
..-++-|+..|.|+||.++.+||..|+..-. -+.++.++.+ ++ .|+||||+|+. |...+
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe--------~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEE--------HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhh--------cchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 1135688899999999999999999998521 2344444433 22 39999999999 55543
No 55
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.49 E-value=0.00035 Score=59.26 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=51.2
Q ss_pred chhhhhhcccCCCCCccCHHHHHHHHHH-cC----C--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEVMEE-LG----A--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~L~~-lg----~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
.+-..|..|- .++|.++..||+..|.. ++ . .+..++++|+.+|.|+||.|+|.||+.++..+.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3456777776 34569999999999865 22 2 478899999999999999999999999988764
No 56
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.46 E-value=0.00012 Score=58.01 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=43.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 506 AREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 506 v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
++++|+.+|.|++|.|+.+||..++..+..........+.+...| ..+|+|+||.|+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~d~dG~i~~ 59 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIF--REFDTDGDGRISF 59 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHH--HHHTTTSSSSEEH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHH--HHhCCCCcCCCcH
Confidence 578999999999999999999999987541111011223445557 5689999999997
No 57
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.44 E-value=0.00029 Score=61.58 Aligned_cols=64 Identities=28% Similarity=0.466 Sum_probs=57.3
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+..+|...|. ++|.|+.++.+.++...|.+.+.+..+|...|.|+||.++++||+-.++-+.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 567889999885 6899999999999999999999999999999999999999999999888653
No 58
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.39 E-value=0.00064 Score=71.69 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=41.7
Q ss_pred chhhhhhcccCCCCCccCHHHHHHHHHHcCC------ChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEVMEELGA------PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~------~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
.+..+|+..|.|++|.||.+||..+.+.++. +.+.+.++-..+|.|+||+|++.||+.....
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 4555677777777777777777777666543 4566666777777777777777777665554
No 59
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.31 E-value=0.0017 Score=68.52 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=75.3
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHc---CCC--------------------------------------------
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEEL---GAP-------------------------------------------- 502 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~l---g~~-------------------------------------------- 502 (576)
..+...|+.+|.++.|+|+...+..+++.. |.+
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 578899999999999999999999888762 110
Q ss_pred --hHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH--HHHH
Q 008155 503 --GEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV--YSTE 569 (576)
Q Consensus 503 --~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~--~l~~ 569 (576)
...++.+|..+|.|+.|.||.+||...|..+..--+....++++.+.- ...|-|+||+|+. ++..
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la--~~mD~NkDG~IDlNEfLeA 612 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA--RSMDLNKDGKIDLNEFLEA 612 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH--HhhccCCCCcccHHHHHHH
Confidence 011466899999999999999999999997653333345666766666 5579999999998 5544
No 60
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.25 E-value=0.00063 Score=61.78 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=53.0
Q ss_pred chhhhhhcccCCCCCccCHHHHHHHHHHcCC---ChHH----HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEVMEELGA---PGED----AREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~~~~----v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
+..-+|+.+|-|+|+.|..++|...+..+.. ++++ ++++++..|.|+||+++|.||-.++..
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 4557899999999999999999999988754 4444 577899999999999999999887764
No 61
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.25 E-value=0.0013 Score=77.83 Aligned_cols=118 Identities=17% Similarity=0.267 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccchhhhhhcccCCCCCccCHHHHHHHHHHcCC---------ChHHHHHHHHhh
Q 008155 443 AIMLAAAELAALRLKDIPSTNHKGFEFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA---------PGEDAREMMQLL 513 (576)
Q Consensus 443 ~l~~aA~elA~~~F~~~d~~~~~~i~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---------~~~~v~~l~~~~ 513 (576)
.+++....-..+...+-+.+|...-.-..+..+|+.||++.+|.++..+|+.+|+.+|. ++..+++++...
T Consensus 2226 qL~~rMqhnlEQqIqarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~v 2305 (2399)
T KOG0040|consen 2226 QLMMRMQHNLEQQIQARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLV 2305 (2399)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhc
Confidence 33333333344444544444443322356788999999999999999999999999986 345899999999
Q ss_pred CCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 514 DSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 514 D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
|+|.+|.|+..+|+.||-.-+ ...-..++++-.+| +..|. |.-+|++
T Consensus 2306 DP~r~G~Vsl~dY~afmi~~E--TeNI~s~~eIE~Af--raL~a-~~~yvtk 2352 (2399)
T KOG0040|consen 2306 DPNRDGYVSLQDYMAFMISKE--TENILSSEEIEDAF--RALDA-GKPYVTK 2352 (2399)
T ss_pred CCCCcCcccHHHHHHHHHhcc--cccccchHHHHHHH--HHhhc-CCccccH
Confidence 999999999999999998643 22234556889999 55888 7888887
No 62
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.22 E-value=0.00045 Score=73.68 Aligned_cols=87 Identities=18% Similarity=0.307 Sum_probs=68.1
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCCC-----hHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGAP-----GEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRD 543 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~-----~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~ 543 (576)
+.....+|+.||..++|.+|.+++..++...... ..+.+.+-..+..+....++|+||.++++.+. .
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~--------~ 178 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ--------L 178 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH--------H
Confidence 4678899999999999999999999999886541 12222222344445667799999999999765 5
Q ss_pred HHHHHHHhHHhhccCCCccccH
Q 008155 544 DEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 544 ~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
++..++|++ .|+.++|.||.
T Consensus 179 E~~~qafr~--~d~~~ng~is~ 198 (694)
T KOG0751|consen 179 EHAEQAFRE--KDKAKNGFISV 198 (694)
T ss_pred HHHHHHHHH--hcccCCCeeee
Confidence 678899955 99999999998
No 63
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00073 Score=71.43 Aligned_cols=87 Identities=25% Similarity=0.389 Sum_probs=66.1
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHc------CC------C-----hHHHHH--HHHhhCCCCCCcccHHHHHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEEL------GA------P-----GEDARE--MMQLLDSNSDGSLSSDEFDLF 529 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~l------g~------~-----~~~v~~--l~~~~D~n~dG~Isf~EF~~~ 529 (576)
...+.-+|++||.||||-|+.+||..+.+.. |. + .-.++. ...-|..+++|+++++||+.|
T Consensus 232 ~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 232 ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHH
Confidence 4567899999999999999999999987432 21 0 111111 344568899999999999999
Q ss_pred HHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 530 QKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 530 l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+..+. .+-+.-.| .-+|+..+|.|+.
T Consensus 312 ~e~Lq--------~Eil~lEF--~~~~~~~~g~Ise 337 (489)
T KOG2643|consen 312 QENLQ--------EEILELEF--ERFDKGDSGAISE 337 (489)
T ss_pred HHHHH--------HHHHHHHH--HHhCcccccccCH
Confidence 99866 44556678 5589999999998
No 64
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.20 E-value=0.00019 Score=48.36 Aligned_cols=29 Identities=41% Similarity=0.798 Sum_probs=22.7
Q ss_pred hhhhhhcccCCCCCccCHHHHHHHHH-HcC
Q 008155 472 RDRVFRLLDKNGDGRISIEELMEVME-ELG 500 (576)
Q Consensus 472 l~~~F~~~D~d~dG~Is~~EL~~~L~-~lg 500 (576)
++.+|+.+|.|+||+|+.+||..+|. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56788888888888888888888887 565
No 65
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.15 E-value=0.0012 Score=70.90 Aligned_cols=53 Identities=30% Similarity=0.463 Sum_probs=47.7
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
...+..+|+.+|.|+||.|+.+||.. ++.+|..+|.|+||.|+++||..++..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 47789999999999999999999842 577999999999999999999998874
No 66
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.10 E-value=0.00076 Score=60.92 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=54.6
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQ 530 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l 530 (576)
+.+-+..+.||++++|.|...||+.+|..+|. ++++++.++... .|.+|.|+|+.|++.+
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 77888999999999999999999999999998 899999999886 4778999999998754
No 67
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.75 E-value=0.00074 Score=43.24 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=10.7
Q ss_pred HHHHhhCCCCCCcccHHHHHH
Q 008155 508 EMMQLLDSNSDGSLSSDEFDL 528 (576)
Q Consensus 508 ~l~~~~D~n~dG~Isf~EF~~ 528 (576)
..|+.+|.|+||.|+++||.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 344555555555555555544
No 68
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.61 E-value=0.0078 Score=51.58 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=45.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 504 EDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 504 ~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
..+...|..+|.|++|.|+++|+..++... ....+++..+| ..+|.+++|.|+.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~------~~~~~ev~~i~--~~~d~~~~g~I~~ 63 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS------GLPQTLLAKIW--NLADIDNDGELDK 63 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc------CCCHHHHHHHH--HHhcCCCCCCcCH
Confidence 356778999999999999999999998752 24567788888 6689999999999
No 69
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.57 E-value=0.00059 Score=60.57 Aligned_cols=59 Identities=32% Similarity=0.373 Sum_probs=45.6
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDL 528 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~ 528 (576)
..+...|..+|.|+||.++..|+..+...+...+.-+..++...|.|+||.||+.||..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 56788899999999999999999988765644666788999999999999999999975
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.55 E-value=0.0028 Score=40.53 Aligned_cols=25 Identities=36% Similarity=0.717 Sum_probs=22.3
Q ss_pred hhhhhhcccCCCCCccCHHHHHHHH
Q 008155 472 RDRVFRLLDKNGDGRISIEELMEVM 496 (576)
Q Consensus 472 l~~~F~~~D~d~dG~Is~~EL~~~L 496 (576)
++.+|+.+|.|+||.||.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 71
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.43 E-value=0.0073 Score=47.38 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=43.3
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 507 REMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 507 ~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+++|..+|.|++|.|+.+||..++.... .+.+++...| ..+|.+++|.|+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g------~~~~~~~~i~--~~~d~~~~g~i~~ 52 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG------LPRSVLAQIW--DLADTDKDGKLDK 52 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC------CCHHHHHHHH--HHhcCCCCCcCCH
Confidence 4678999999999999999999887532 3567788889 6699999999998
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.42 E-value=0.009 Score=44.93 Aligned_cols=47 Identities=28% Similarity=0.521 Sum_probs=40.3
Q ss_pred ccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 486 RISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 486 ~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
++|..|++.+|..+.+ ++..+..+|+..|.+++|.+..+||..|+..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3678999999999887 6888999999999999999999999999875
No 73
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.41 E-value=0.011 Score=44.46 Aligned_cols=54 Identities=26% Similarity=0.398 Sum_probs=44.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 506 AREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 506 v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+..+|..+|.+++|.|+++||..++.... .....+.+...| ..+|.+++|.|+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~----~~~~~~~~~~~~--~~~~~~~~~~l~~ 55 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG----EGLSEEEIDEMI--REVDKDGDGKIDF 55 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC----CCCCHHHHHHHH--HHhCCCCCCeEeH
Confidence 45788999999999999999999988642 345667788889 6699999999987
No 74
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.10 E-value=0.013 Score=52.34 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=42.2
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 503 GEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 503 ~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
...+...|..+|.|+||.|+.+|+..+.. ......+...| ..+|.|+||.||.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l--------~~~e~~~~~f~--~~~D~n~Dg~IS~ 99 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIRL--------DPNEHCIKPFF--ESCDLDKDGSISL 99 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHc--------cchHHHHHHHH--HHHCCCCCCCCCH
Confidence 45688899999999999999999987751 12234556667 5579999999998
No 75
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.07 E-value=0.017 Score=49.03 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=44.7
Q ss_pred HHHHHHHhhCC-CCCCcccHHHHHHHHHH-HHhhhccCCCH-HHHHHHHhHHhhccCCCccccH
Q 008155 505 DAREMMQLLDS-NSDGSLSSDEFDLFQKQ-VEFMRNLEDRD-DEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 505 ~v~~l~~~~D~-n~dG~Isf~EF~~~l~~-v~~~~~~~~~~-~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.+...|..+|. +++|.|+.+||..++.. +. .. .+. +++...+ +..|.|+||.|+.
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg--~~--ls~~~~v~~mi--~~~D~d~DG~I~F 66 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLP--HL--LKDVEGLEEKM--KNLDVNQDSKLSF 66 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh--hh--ccCHHHHHHHH--HHhCCCCCCCCcH
Confidence 45678999999 99999999999999987 44 11 233 6788888 5589999999999
No 76
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.96 E-value=0.029 Score=47.57 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=46.6
Q ss_pred HHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-HHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 504 EDAREMMQLLD-SNSDG-SLSSDEFDLFQKQ-VEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 504 ~~v~~l~~~~D-~n~dG-~Isf~EF~~~l~~-v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+.+.+.|..+| .+++| .|+..||..++.. +...-+...+.+++...| ..+|.|++|.|+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~--~~~D~d~~G~I~f 71 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIM--KELDENGDGEVDF 71 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHH--HHHCCCCCCcCcH
Confidence 46788999997 99999 5999999999974 431111123567888899 5589999999998
No 77
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.88 E-value=0.0043 Score=61.01 Aligned_cols=59 Identities=25% Similarity=0.387 Sum_probs=48.0
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHH-cCC----ChHHHHHHHHhhCCCCCCcccHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEE-LGA----PGEDAREMMQLLDSNSDGSLSSDEFDL 528 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~-lg~----~~~~v~~l~~~~D~n~dG~Isf~EF~~ 528 (576)
..++.+|...|.|.||+||..|+++.+.. ... ..++.+..|...|+|+||.|+++||.-
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 57889999999999999999999986544 211 334556688889999999999999954
No 78
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.76 E-value=0.038 Score=46.34 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=45.7
Q ss_pred HHHHHHHHhhCC--CCCCcccHHHHHHHHHH-HHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 504 EDAREMMQLLDS--NSDGSLSSDEFDLFQKQ-VEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 504 ~~v~~l~~~~D~--n~dG~Isf~EF~~~l~~-v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+.+...|..+|. |++|.|+++||..++.. +........+.+++...| ..+|.+++|.|+.
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~--~~~d~~~~g~I~f 70 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM--KDLDVNKDGKVDF 70 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH--HHhccCCCCcCcH
Confidence 456778999999 89999999999999874 220000123467788888 5689999999999
No 79
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.71 E-value=0.012 Score=60.29 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=71.3
Q ss_pred HHHHhhhcCCCCCCCCCc-----------------cccchhhhhhcccCCCCCccCHHHHHHHHHH-cCCChHHHHHHHH
Q 008155 450 ELAALRLKDIPSTNHKGF-----------------EFDWRDRVFRLLDKNGDGRISIEELMEVMEE-LGAPGEDAREMMQ 511 (576)
Q Consensus 450 elA~~~F~~~d~~~~~~i-----------------~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~-lg~~~~~v~~l~~ 511 (576)
...+..|..||.++.|.+ +...++-+|+.|+.+.||.+...+|..+++. +|...-.+.-+|.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFP 338 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccch
Confidence 556678999998877654 5678899999999999999999999999975 5666677888999
Q ss_pred hhCCCCCCcccHHHHHHHHHH
Q 008155 512 LLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 512 ~~D~n~dG~Isf~EF~~~l~~ 532 (576)
.++...+|+|+|.+|..|+..
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred hhhcccCcceeHHHHHHHHHh
Confidence 999999999999999998874
No 80
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.68 E-value=0.039 Score=47.06 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=45.2
Q ss_pred HHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-HHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 504 EDAREMMQLLDS-NS-DGSLSSDEFDLFQKQ-VEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 504 ~~v~~l~~~~D~-n~-dG~Isf~EF~~~l~~-v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
..+...|..+|. |+ +|.|+.+|+..++.. .........+.+++...| ..+|.|++|.|+.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~--~~~D~~~dg~I~f 70 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM--KDLDQNRDGKVNF 70 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH--HHhCCCCCCcCcH
Confidence 456778999997 87 699999999998874 221111234566788888 5589999999999
No 81
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.66 E-value=0.018 Score=62.45 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=56.1
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC-----ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA-----PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~-----~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+...|...| |++|+|+..|+..++...+. ..+++++++...+.|.+|+|+|+||+..+..+.
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 35678899999 99999999999999998776 378899999999999999999999999766543
No 82
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.63 E-value=0.046 Score=46.64 Aligned_cols=59 Identities=7% Similarity=0.031 Sum_probs=43.5
Q ss_pred HHHHHHHhhC-CCCCC-cccHHHHHHHHHHHHh-hhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 505 DAREMMQLLD-SNSDG-SLSSDEFDLFQKQVEF-MRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 505 ~v~~l~~~~D-~n~dG-~Isf~EF~~~l~~v~~-~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.+.++|..+| .|++| .|+..||..++..... .-.......++.+.+ .-+|.|+||.|+.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~--~elD~n~dG~Idf 72 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM--NDLDSNKDNEVDF 72 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH--HHhCCCCCCCCCH
Confidence 4566799998 78998 5999999999875210 001123566888888 4489999999999
No 83
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.58 E-value=0.053 Score=45.87 Aligned_cols=59 Identities=7% Similarity=0.114 Sum_probs=44.5
Q ss_pred HHHHHHHhhC-CCCCC-cccHHHHHHHHHH-HHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 505 DAREMMQLLD-SNSDG-SLSSDEFDLFQKQ-VEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 505 ~v~~l~~~~D-~n~dG-~Isf~EF~~~l~~-v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.+.+.|..+| .+++| .|+.+||..++.. ++.+-+...+.+++...+ +-.|+|++|.|+.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i--~~~D~n~dG~v~f 70 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVM--ETLDSDGDGECDF 70 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHH--HHhCCCCCCcCcH
Confidence 4677899998 79999 5999999999985 111112234566788888 4479999999998
No 84
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.53 E-value=0.017 Score=38.66 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 505 DAREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 505 ~v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
+++.+|..+|.|++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999887
No 85
>PRK14707 hypothetical protein; Provisional
Probab=95.31 E-value=0.042 Score=67.95 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=93.6
Q ss_pred hhhcccchHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHh-cccccccccceeEEeeccCcchHHHHHhh----cCCCC-
Q 008155 253 FRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKT-DATLADLVEDVSVQGRYKSRYSTMKKLLK----DGRIP- 326 (576)
Q Consensus 253 f~~l~P~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~il~~~~~~~~v~~R~K~~~Si~~Kl~r----~~~~~- 326 (576)
|+-+.|+.-....+.+...-...|.-|..+ |+.++.. .|. -.....|+||..|+.+|+.. ++.++
T Consensus 2263 ~~~~~p~~~~~~a~~Ll~~A~~~Ep~ITp~---Lr~ia~~~~G~------L~GLe~RLKS~~SLkrKL~~~~~~~~~sle 2333 (2710)
T PRK14707 2263 LRDVQPQDIALKAQTLLGRARQMEPQVTDM---LQNIAARHGGQ------LAGTQHQLKSYSSLQEKLKQRVALKKQSLE 2333 (2710)
T ss_pred hccCCHHHHHHHHHHHHHHHHhccccccHH---HHHHHHHhcCc------ccchHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 344455555554455544443344333333 3333332 222 23457899999999999964 35554
Q ss_pred ---CccCCCceEEEEEecCCCCcccchhcHHHHHHHHHHHHhc-cccCCCcchhhhcCCCcCCCcccceEEEecCCCCCc
Q 008155 327 ---EEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSL-WKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTR 402 (576)
Q Consensus 327 ---~~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~~~~~i~~~-~~~~~~~~kDyI~~Pk~nGYqSlH~~v~~~~~~~~~ 402 (576)
..|+|.+-.=||+++.+= ...+..+++.+... |+.+ +++.+- ..+.++|..+++++. ++ .|
T Consensus 2334 eAaa~VnDALRYTVVLpp~~F--------va~~r~Il~aL~~qGy~~v--kvkN~F-~~~~~~YkGINvtL~-~p---dG 2398 (2710)
T PRK14707 2334 EAAASVNDALRYSVVLEPQGF--------TAGLRAVLAALDDQGHARV--KLTNQF-TEYSPSFKAINLTLR-SP---EG 2398 (2710)
T ss_pred HHHHHhhhheeEEEEcCchhH--------HHHHHHHHHHHHHcCCeEE--EEeecc-cCCCCCccceEEEEE-cC---CC
Confidence 679998777777766332 55677777666554 5443 455543 234678999999996 33 34
Q ss_pred ceEEEEeeCHhHHHHHhccCcccccccC
Q 008155 403 PLMEIQIRTEEMDMLAVNGTASHAFYKG 430 (576)
Q Consensus 403 ~~~EIQIRT~~mh~~A~~g~aah~~yk~ 430 (576)
..+|||--|..--.--+. .|..||.
T Consensus 2399 ~~FEIQFHT~qSF~LK~r---~HdLYKQ 2423 (2710)
T PRK14707 2399 ALWEIQFHTPETFALKER---FHDLYKR 2423 (2710)
T ss_pred cEEEEEeccHHHHHHHHH---HHHHHHH
Confidence 589999999876655543 5999997
No 86
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.07 E-value=0.046 Score=41.27 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=36.0
Q ss_pred CCCcccHHHHHHHHHHHHhhhccC-CCHHHHHHHHhHHhhccCCCccccH
Q 008155 517 SDGSLSSDEFDLFQKQVEFMRNLE-DRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 517 ~dG~Isf~EF~~~l~~v~~~~~~~-~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.+|.|+.++|..++..+ +.. .+.+++...| ..+|.|++|.|+.
T Consensus 1 ~~G~i~~~~~~~~l~~~----g~~~~s~~e~~~l~--~~~D~~~~G~I~~ 44 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL----GIKDLSEEEVDRLF--REFDTDGDGYISF 44 (54)
T ss_dssp SSSEEEHHHHHHHHHHT----TSSSSCHHHHHHHH--HHHTTSSSSSEEH
T ss_pred CcCEECHHHHHHHHHHh----CCCCCCHHHHHHHH--HhcccCCCCCCCH
Confidence 47999999999999642 334 6788899999 6699999999998
No 87
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.052 Score=47.62 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=43.8
Q ss_pred hhhhcccCCCCCccCHHHHHHHHHHc------CC------ChHH----HHHHHHhhCCCCCCcccHHHHHHH
Q 008155 474 RVFRLLDKNGDGRISIEELMEVMEEL------GA------PGED----AREMMQLLDSNSDGSLSSDEFDLF 529 (576)
Q Consensus 474 ~~F~~~D~d~dG~Is~~EL~~~L~~l------g~------~~~~----v~~l~~~~D~n~dG~Isf~EF~~~ 529 (576)
..|++.|.|+||.++.=|+.+++.-. |. ++.+ +..++..-|.|+||.|+|-||++-
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 67899999999999999999887653 21 2444 445666679999999999999763
No 88
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.038 Score=58.82 Aligned_cols=88 Identities=16% Similarity=0.288 Sum_probs=68.3
Q ss_pred cccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcc-----------CCCHHHH
Q 008155 478 LLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNL-----------EDRDDEY 546 (576)
Q Consensus 478 ~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~-----------~~~~~e~ 546 (576)
.+|.+.+|-||..|..-.+..|..++..++--|+.+|.|+||.|+.+||...+.-+..-..+ .....++
T Consensus 207 F~~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 207 FYKLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred EEEcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 35678999999999999999998888889999999999999999999999888643211110 0112245
Q ss_pred HHHHhHHhhccCCCccccH
Q 008155 547 RTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 547 ~~~f~~~~~Dkd~dG~It~ 565 (576)
..++..-||-++++|+++.
T Consensus 287 nsaL~~yFFG~rg~~kLs~ 305 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSI 305 (489)
T ss_pred hhhHHHHhhccCCCccccH
Confidence 5566666789999999998
No 89
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=94.47 E-value=0.16 Score=43.01 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHHHHHHh-hCCCCCC-cccHHHHHHHHHHHHh-hhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 505 DAREMMQL-LDSNSDG-SLSSDEFDLFQKQVEF-MRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 505 ~v~~l~~~-~D~n~dG-~Isf~EF~~~l~~v~~-~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.+..+|.. +|.+++| .|+.+||..++....+ .-.......++...| +-+|.|+||.|+.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll--~~~D~d~DG~I~f 71 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM--KKLDLNSDGQLDF 71 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH--HHcCCCCCCcCcH
Confidence 34567777 7788876 9999999999986310 011123456788888 5589999999999
No 90
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.40 E-value=0.095 Score=56.34 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=67.9
Q ss_pred CCCCCCC-ccccchhhh---hhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHH----hhCCCCCCcccHHHHHHHHH
Q 008155 460 PSTNHKG-FEFDWRDRV---FRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQ----LLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 460 d~~~~~~-i~~~~l~~~---F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~----~~D~n~dG~Isf~EF~~~l~ 531 (576)
+.++... ++-+....+ |-.+|+|+||.|+.++|...-... .+.--++.+|+ ..-.-.+|+++|++|+-|+.
T Consensus 264 d~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t-lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 264 DINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT-LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFIL 342 (493)
T ss_pred hhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc-hhhHHHHHHHhhccccceeeecCcccHHHHHHHHH
Confidence 3444443 233556666 666799999999999998764322 15677888998 33455889999999999998
Q ss_pred HHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 532 QVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 532 ~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
..+ .+ .+..-+.=-| +..|.+|+|.|+.
T Consensus 343 A~e--~k--~t~~SleYwF--rclDld~~G~Lt~ 370 (493)
T KOG2562|consen 343 AEE--DK--DTPASLEYWF--RCLDLDGDGILTL 370 (493)
T ss_pred Hhc--cC--CCccchhhhe--eeeeccCCCcccH
Confidence 754 21 2222223345 4469999999998
No 91
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=94.22 E-value=0.18 Score=42.67 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHHHHHhhCC-CC-CCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 506 AREMMQLLDS-NS-DGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 506 v~~l~~~~D~-n~-dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+-.+|..+|. |+ +|.|+.+||..++.....+ +...+.+++.+.| +-.|.|++|.|+.
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l-g~k~t~~ev~~m~--~~~D~d~dG~Idf 70 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTI-GSKLQDAEIAKLM--EDLDRNKDQEVNF 70 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc-CCCCCHHHHHHHH--HHhcCCCCCCCcH
Confidence 4468888887 66 8999999999999642111 2235677888888 4589999999999
No 92
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=94.10 E-value=0.14 Score=46.94 Aligned_cols=86 Identities=14% Similarity=0.317 Sum_probs=63.1
Q ss_pred hhcccCCCCCccCHHHHHHHHHHcCC-C--hHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhH
Q 008155 476 FRLLDKNGDGRISIEELMEVMEELGA-P--GEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDE 552 (576)
Q Consensus 476 F~~~D~d~dG~Is~~EL~~~L~~lg~-~--~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~ 552 (576)
-..|..||.|-+|.++|..+++.+.. . +-.+.--|+.+|-|+|+.|.-++....+..+. +.+..+++...+-.
T Consensus 77 ~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT---r~eLs~eEv~~i~e- 152 (189)
T KOG0038|consen 77 CEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT---RDELSDEEVELICE- 152 (189)
T ss_pred HHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh---hccCCHHHHHHHHH-
Confidence 34455799999999999998887765 2 33445567888999999999999988888653 22455665544432
Q ss_pred Hhh---ccCCCccccH
Q 008155 553 KLQ---MAGDSGLIQV 565 (576)
Q Consensus 553 ~~~---Dkd~dG~It~ 565 (576)
+.. |.||||+|+.
T Consensus 153 kvieEAD~DgDgkl~~ 168 (189)
T KOG0038|consen 153 KVIEEADLDGDGKLSF 168 (189)
T ss_pred HHHHHhcCCCCCcccH
Confidence 222 8999999998
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.97 E-value=0.049 Score=34.05 Aligned_cols=23 Identities=48% Similarity=1.006 Sum_probs=11.0
Q ss_pred hhhhcccCCCCCccCHHHHHHHH
Q 008155 474 RVFRLLDKNGDGRISIEELMEVM 496 (576)
Q Consensus 474 ~~F~~~D~d~dG~Is~~EL~~~L 496 (576)
.+|+.+|.+++|.|+.+||..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 44444444444445544444444
No 94
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.09 E-value=0.1 Score=32.51 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 506 AREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 506 v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
++.+|+.+|.+++|.|++.||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988763
No 95
>PRK14707 hypothetical protein; Provisional
Probab=92.90 E-value=0.65 Score=58.16 Aligned_cols=193 Identities=17% Similarity=0.123 Sum_probs=108.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhHHhHhCchhHHHHHHH---hhhhhcccchH-------------HHHHHHHHhhhcCcH
Q 008155 213 LDYLPRYQQLMISLEVMKIHAPLAHAVATNYLSFELED---LSFRYLFPFSY-------------LFVDTWLRSHETGSK 276 (576)
Q Consensus 213 l~~~~~~k~~~~a~Et~~iy~pLA~rlG~~~lk~eLEd---l~f~~l~P~~y-------------~~i~~~l~~~~~~~~ 276 (576)
+...++++|+.+-.+..+.|.....=-|...|-.-=+. ..+ -..|..- ..+...-.....+..
T Consensus 2429 lqGAs~~~~ral~a~a~e~f~aVp~P~Gce~I~dW~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~a~~~~~~v~ 2507 (2710)
T PRK14707 2429 LGGASRAEQRTLQAPALEAFKRVASPPGCEEIDDWQEETVPALA-GTPPALASEQTPVNAGASPAHRVFNAATGKQASLT 2507 (2710)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCCCCchhhhhhhhccCcccCc-CCCCccccccccccccccHHHHHHHHhhhcccccC
Confidence 45567788888888888888776555555443321111 010 1111111 222222222233333
Q ss_pred HHHHHHHHHHHHHHHhcccccccccceeEEeec---------cCcchHHHHHhhc---CCCC----CccCCCceEEEEEe
Q 008155 277 PLIDIYKEQLLQCLKTDATLADLVEDVSVQGRY---------KSRYSTMKKLLKD---GRIP----EEVNDVLGLRVIIK 340 (576)
Q Consensus 277 ~~~~~~~~~l~~~l~~~~il~~~~~~~~v~~R~---------K~~~Si~~Kl~r~---~~~~----~~i~Dl~g~RvI~~ 340 (576)
.+++.+...+...|..++. .-.-+||. |+..||.+|+.+. |.+. ..|.|.+-.=||++
T Consensus 2508 p~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp 2581 (2710)
T PRK14707 2508 PVLNTLADGLGARLWGNVR------YKASQGRIEQVQQAPFQKSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELP 2581 (2710)
T ss_pred hHHHHHHHHhhhhhcccCc------cccccchhhhhhhcccCCCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcC
Confidence 4444444444444444432 22345666 9999999999764 5443 57889754444444
Q ss_pred cCCCCcccchhcHHHHHHHHHHHHhc-cccCCCcchhhhcCCCcCCCcccceEEEecCCCCCcceEEEEeeCHhHHHHHh
Q 008155 341 PSSNLVNTSEVGERACYTTREIIQSL-WKEMPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAV 419 (576)
Q Consensus 341 ~~~~~~~~~~~~~~~cy~~~~~i~~~-~~~~~~~~kDyI~~Pk~nGYqSlH~~v~~~~~~~~~~~~EIQIRT~~mh~~A~ 419 (576)
. + .-+...+.+.+.+... |+.+ ++|.+-..| .+.|..+-+++.-+ .|..||||--|..--. +.
T Consensus 2582 ~--e------~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d~tY~GvN~~~r~~----~g~~FEIQFHT~~Sf~-~K 2645 (2710)
T PRK14707 2582 S--E------GFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-DGTYRGINASFTDA----EGYAFEVQFHTAESFN-AK 2645 (2710)
T ss_pred c--c------hHHHHHHHHHHHHHhcCCeEE--EeeccccCC-CCcccceeeeEEcC----CCCeEEEEeccHHHHH-HH
Confidence 3 2 2345566666655543 6655 677665333 56799999999743 3336999999976544 44
Q ss_pred ccCcccccccC
Q 008155 420 NGTASHAFYKG 430 (576)
Q Consensus 420 ~g~aah~~yk~ 430 (576)
.+ .|..|+.
T Consensus 2646 ~~--tH~lYek 2654 (2710)
T PRK14707 2646 AQ--THLSYKR 2654 (2710)
T ss_pred HH--hHHHHHh
Confidence 43 5999965
No 96
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=92.68 E-value=0.072 Score=45.80 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=28.2
Q ss_pred CCChhHHHHHHHHHHHHcC------CCHHHHHhhhhhhccccC
Q 008155 106 SRSPLTKALSVALLLADLQ------MDAEVISAGLLRQVVESG 142 (576)
Q Consensus 106 g~pyi~H~l~Va~iL~~~~------~d~~~i~AalLHDvvEDt 142 (576)
+.+.+.|.+.|+.+...+. .......||||||+-...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 4677899999999876443 345678899999997753
No 97
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=92.54 E-value=0.37 Score=47.80 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=52.2
Q ss_pred hhhhhhcccCCCCCccCHHHHHHHHHHc-CCC----------------hHHHHHHHHhhCCCCCCcccH---------HH
Q 008155 472 RDRVFRLLDKNGDGRISIEELMEVMEEL-GAP----------------GEDAREMMQLLDSNSDGSLSS---------DE 525 (576)
Q Consensus 472 l~~~F~~~D~d~dG~Is~~EL~~~L~~l-g~~----------------~~~v~~l~~~~D~n~dG~Isf---------~E 525 (576)
-.--|+..|+|+||.|+++|++--+... |.+ +++.+.+. .-+.+.+|+.+- +|
T Consensus 142 SkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevl-enlkdRwyqaDsppadlllteeE 220 (362)
T KOG4251|consen 142 SKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVL-ENLKDRWYQADSPPADLLLTEEE 220 (362)
T ss_pred hhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHH-HhhhhhhccccCchhhhhhhHHH
Confidence 3456889999999999999998654332 221 22233333 334555666554 99
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 526 FDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 526 F~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
|+.|++.-. ....-..-.+.++ .-+|+|||-.+++
T Consensus 221 flsFLHPEh---SrgmLrfmVkeiv--rdlDqdgDkqlSv 255 (362)
T KOG4251|consen 221 FLSFLHPEH---SRGMLRFMVKEIV--RDLDQDGDKQLSV 255 (362)
T ss_pred HHHHcChHh---hhhhHHHHHHHHH--HHhccCCCeeecc
Confidence 999987421 0000011223333 3359999988887
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=0.16 Score=57.49 Aligned_cols=65 Identities=29% Similarity=0.402 Sum_probs=59.8
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
-++++.|+.+|+...|++|...-+.+|...+.+...+..++..-|.|+||+++-+||+-.+..+.
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 46889999999999999999999999999888888899999999999999999999998887665
No 99
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.42 E-value=0.27 Score=50.62 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=50.6
Q ss_pred chhhhhhcccCCCCCccCHHHHHHH---HHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEV---MEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~---L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
.+...|..+|+|.++.|...|++-+ +..-.....-.+.+++..|.|+|-+||++|+...+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 5788899999999999999986554 4333334556788999999999999999999998874
No 100
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=92.27 E-value=0.1 Score=45.22 Aligned_cols=33 Identities=30% Similarity=0.294 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHcCC------CHH-HHHhhhhhhccccC
Q 008155 110 LTKALSVALLLADLQM------DAE-VISAGLLRQVVESG 142 (576)
Q Consensus 110 i~H~l~Va~iL~~~~~------d~~-~i~AalLHDvvEDt 142 (576)
+.|.+.|+.+...+.. +.+ ..+||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 5799999997765432 222 66899999997654
No 101
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=91.65 E-value=0.5 Score=51.21 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=62.2
Q ss_pred cchhhhhhcc---cCCCCCccCHHHHHHH-HHHcCC--ChHHHHHH-HHhhCCCCCCcccHHHHHHHHHHHHhhhccCCC
Q 008155 470 DWRDRVFRLL---DKNGDGRISIEELMEV-MEELGA--PGEDAREM-MQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDR 542 (576)
Q Consensus 470 ~~l~~~F~~~---D~d~dG~Is~~EL~~~-L~~lg~--~~~~v~~l-~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~ 542 (576)
++++.+|-.+ ++++....+.++|..- +..++. ..+++..+ -...|..+||-|||+||..|-.- . ...
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~-l-----C~p 106 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESV-L-----CAP 106 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhh-c-----cCc
Confidence 4566666554 7788888999998764 333333 23444444 44457889999999999876442 1 245
Q ss_pred HHHHHHHHhHHhhccCCCccccH
Q 008155 543 DDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 543 ~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+.-+..+| ..||+.++|.+|.
T Consensus 107 Dal~~~aF--qlFDr~~~~~vs~ 127 (694)
T KOG0751|consen 107 DALFEVAF--QLFDRLGNGEVSF 127 (694)
T ss_pred hHHHHHHH--HHhcccCCCceeh
Confidence 66778899 8899999999998
No 102
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.61 E-value=0.29 Score=52.79 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH--HHHHhc
Q 008155 502 PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV--YSTELG 571 (576)
Q Consensus 502 ~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~--~l~~lG 571 (576)
....+..+|..+|.|+||.|+++||.. ....| ..+|.|+||.|+. +..-+|
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-----------------~~~~F--~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-----------------SDAVF--DALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-----------------HHHHH--HHhCCCCCCCCcHHHHHHHHH
Confidence 366788999999999999999999952 23457 6689999999999 444443
No 103
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=90.55 E-value=0.54 Score=45.42 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=44.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 504 EDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 504 ~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.+...+|..+|.+.||.|++.|...+|..+. .+.+.--++... +-.|.|.||+||.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg----apQTHL~lK~mi--keVded~dgklSf 154 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLG----APQTHLGLKNMI--KEVDEDFDGKLSF 154 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhC----CchhhHHHHHHH--HHhhcccccchhH
Confidence 5678899999999999999999999988754 223344455555 4469999999999
No 104
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.50 E-value=0.27 Score=40.74 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=49.6
Q ss_pred hhhhhhcccCCCCCccCHHHHHHHHHHcCC----ChHHHHHHHHhhCCC----CCCcccHHHHHHHHHH
Q 008155 472 RDRVFRLLDKNGDGRISIEELMEVMEELGA----PGEDAREMMQLLDSN----SDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 472 l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~----~~~~v~~l~~~~D~n----~dG~Isf~EF~~~l~~ 532 (576)
+..+|..+-. +.+.+|.++|...|..-.. +.+.+..++..+..+ ..+.+++++|..++..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5678888844 7889999999999976543 578899999998655 4789999999999875
No 105
>PRK09169 hypothetical protein; Validated
Probab=89.00 E-value=1.5 Score=55.85 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=74.2
Q ss_pred eEEeeccCcchHHHHHh----hcCCCC----CccCCCceEEEEEecCCCCcccchhcHHHHHHHHHHHHhc-cccCCCcc
Q 008155 304 SVQGRYKSRYSTMKKLL----KDGRIP----EEVNDVLGLRVIIKPSSNLVNTSEVGERACYTTREIIQSL-WKEMPHRT 374 (576)
Q Consensus 304 ~v~~R~K~~~Si~~Kl~----r~~~~~----~~i~Dl~g~RvI~~~~~~~~~~~~~~~~~cy~~~~~i~~~-~~~~~~~~ 374 (576)
....|+||..|+.+|+. ++|.++ ..|+|.+-.=|++++.+ -...+..+++.+... |..+ ++
T Consensus 1915 Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~~--------Fva~~r~iv~~L~~~G~~~V--kv 1984 (2316)
T PRK09169 1915 GLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQT--------FVAGYRRILGALDEQGHTRT--RV 1984 (2316)
T ss_pred chHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCcc--------HHHHHHHHHHHHHhCCCeEE--EE
Confidence 45779999999999997 446665 57899755555555432 255677777666654 5443 33
Q ss_pred hhhhcCCCcCCCcccceEEEecCCCCCcceEEEEeeCHhHHHHHhccCcccccccC
Q 008155 375 KDYIARPKANGYRSLHMAVDVSDNGKTRPLMEIQIRTEEMDMLAVNGTASHAFYKG 430 (576)
Q Consensus 375 kDyI~~Pk~nGYqSlH~~v~~~~~~~~~~~~EIQIRT~~mh~~A~~g~aah~~yk~ 430 (576)
+.+-. ...++|..+|+++..+ ..+..+|||--|..--.--+. .|..||.
T Consensus 1985 ~N~F~-~~~~~YkGVNv~l~~s---~~g~~fEIQFHT~qSF~lK~r---~H~lYkq 2033 (2316)
T PRK09169 1985 TNHFK-KRGPAFKGINVTLDAT---GEGVRLEIQFHTPQTFDLKER---FHDLYKQ 2033 (2316)
T ss_pred Eeeec-cCCCCccceEEeeecC---CCCceEEEEecCHHHHHHHHH---hHHHHHH
Confidence 43221 2258999999999433 344589999999876655554 4999996
No 106
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=88.93 E-value=1.9 Score=36.32 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=40.6
Q ss_pred HHHHHHhhCCC--CCCcccHHHHHHHHHH-HHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 506 AREMMQLLDSN--SDGSLSSDEFDLFQKQ-VEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 506 v~~l~~~~D~n--~dG~Isf~EF~~~l~~-v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
+-.+|..++.. .+|.|+.+||..++.. +..........+++...| ..+|.|++|.|+.
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~--~~~D~d~dG~I~f 70 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIF--EDLDTNQDGQLSF 70 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHH--HHcCCCCCCcCcH
Confidence 34567777755 4789999999999973 221000112367788899 5589999999998
No 107
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=87.91 E-value=0.6 Score=48.53 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=52.9
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
...+..+|..+|.|.||.++..||..+- ++..+.-++.+|..-|...||.||-.||.....
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~--ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIE--LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhh--ccCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 4678999999999999999999998763 344677789999999999999999999987655
No 108
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=87.62 E-value=2.9 Score=41.85 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHH---HH-----cCCCHHHH-Hhhhhhhccc
Q 008155 82 SSRLLFKALKLSIPMLQSLPLSPDSRSPLTKALSVALLL---AD-----LQMDAEVI-SAGLLRQVVE 140 (576)
Q Consensus 82 ~~~~l~~A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL---~~-----~~~d~~~i-~AalLHDvvE 140 (576)
+..++++|.+++...+. ..-+.|.+.|...- +. ++.|.+++ +||||||+--
T Consensus 37 dt~l~~~a~~~~~~~l~--------~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~ 96 (228)
T TIGR03401 37 DTPLVKFAQEYAKARLP--------PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGT 96 (228)
T ss_pred ChHHHHHHHHHHHhhCC--------HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcc
Confidence 66778889999886643 23368999988632 21 36777655 7999999864
No 109
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=86.35 E-value=1.2 Score=41.75 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=34.4
Q ss_pred hhcCCCCCCCCCCh--hHHHHHHHHHHHHcCCCHHHHHhhhhhhc
Q 008155 96 MLQSLPLSPDSRSP--LTKALSVALLLADLQMDAEVISAGLLRQV 138 (576)
Q Consensus 96 ~h~gq~rk~~g~py--i~H~l~Va~iL~~~~~d~~~i~AalLHDv 138 (576)
.|.++.. +|+|- ..|.+..|..-..-|.|.+.|+||||||+
T Consensus 18 ~~g~e~y--~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 18 RHGDEGY--SGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred Hcccccc--ccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 4666665 68885 59999999877778999999999999986
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.89 E-value=1.3 Score=48.06 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=56.4
Q ss_pred chhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
-+-.-|+.+-.|-+|+|+..--++++..-..+-+++..||+..|.+.||-++++||+..++.+.
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 3556688888899999999999999988777888999999999999999999999999888654
No 111
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=83.16 E-value=1.1 Score=38.09 Aligned_cols=43 Identities=14% Similarity=0.321 Sum_probs=33.1
Q ss_pred hhcCCCCCCCCCccccchhhhhhcccCCCCCccCHHHHHHHHHHcC
Q 008155 455 RLKDIPSTNHKGFEFDWRDRVFRLLDKNGDGRISIEELMEVMEELG 500 (576)
Q Consensus 455 ~F~~~d~~~~~~i~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg 500 (576)
+|..|-.+.... ..+.++|+.+|.|+||.|+.+||...+..+.
T Consensus 36 Elp~~l~~~~d~---~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 36 EFSEFLKNQNDP---MAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HhHHHHcCCCCH---HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 555554443322 6789999999999999999999999887764
No 112
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=82.87 E-value=1.7 Score=44.53 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=45.2
Q ss_pred hhhhcccCCCCCccCHHHHHHHHHH-c----CC--ChHH-----------HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 474 RVFRLLDKNGDGRISIEELMEVMEE-L----GA--PGED-----------AREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 474 ~~F~~~D~d~dG~Is~~EL~~~L~~-l----g~--~~~~-----------v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
..|.+.|.|+||+++..||..++.. + .. .+++ -+.+|..+|.|.|.-|+.+||++-...
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 5688899999999999999887643 1 11 1222 244889999999999999999986553
No 113
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=82.78 E-value=0.42 Score=42.42 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 503 GEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 503 ~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
...+...|..+|.|+||.|+..|+..+...+. ....-++.-| ...|.|+||.||.
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~------~~e~C~~~F~--~~CD~n~d~~Is~ 107 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM------PPEHCARPFF--RSCDVNKDGKISL 107 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS------TTGGGHHHHH--HHH-TT-SSSEEH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh------hhHHHHHHHH--HHcCCCCCCCCCH
Confidence 55678899999999999999999976655321 1122344444 4569999999986
No 114
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=82.18 E-value=2.5 Score=51.54 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=47.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHH---hhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 505 DAREMMQLLDSNSDGSLSSDEFDLFQKQVE---FMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 505 ~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~---~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
++.-+|..||.+..|.+++.+|..++..+. +|..-..+++++...+ ...|.+.+|+|+.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~l--d~vDP~r~G~Vsl 2315 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEIL--DLVDPNRDGYVSL 2315 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHH--HhcCCCCcCcccH
Confidence 345589999999999999999999999764 2223244566888888 7789999999999
No 115
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=81.97 E-value=4.9 Score=42.53 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHH---H-HcCCCHHHH-HhhhhhhccccCCC-------CHHHHhh-hcCHHHHHHHHHhhhhhhhhhhh
Q 008155 108 SPLTKALSVALLL---A-DLQMDAEVI-SAGLLRQVVESGGV-------SIQQVRD-RIGIGTAHLLHESLRVKNNVNLK 174 (576)
Q Consensus 108 pyi~H~l~Va~iL---~-~~~~d~~~i-~AalLHDvvEDt~~-------t~~~i~~-~fG~~Va~lV~~ltk~~~~~~~~ 174 (576)
..+.|.+.|+... + .++.|.+.+ +||||||+-..... ..+-+++ .|.++++.+|.....- + ++..
T Consensus 187 ~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~g~-G-~~~~ 264 (339)
T PRK12703 187 LLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHIGA-G-ITSE 264 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHhcc-C-CCcc
Confidence 3579999999863 2 356776654 67999999653221 1222322 3556777777554321 1 1110
Q ss_pred cccchHHHHHHHHHHHHhcCCccEEeehhhhHHhhccccCCCCHHHHHHHHHHHHHHHHhHHhHhCchhHHHHHHHhhh
Q 008155 175 LQVLDDETAAALRKFCLTYYDIRALILDLAIRLDMMRHLDYLPRYQQLMISLEVMKIHAPLAHAVATNYLSFELEDLSF 253 (576)
Q Consensus 175 ~~~~~~~~~~~~r~~lla~~d~rv~lIKLADrl~Nmr~l~~~~~~k~~~~a~Et~~iy~pLA~rlG~~~lk~eLEdl~f 253 (576)
......+..-......+-+.+|-.||+|...... ++.+.+..-.++. -++.-++| +..|..|||.++=
T Consensus 265 -----~~~~~gL~~~~~~P~TLEakIV~dADrL~~~~r~--v~~e~~~~k~~~~--~~~~~~~R--~~~l~~~~~~~~g 332 (339)
T PRK12703 265 -----EAQKLGLPVKDYVPETIEEMIVAHADNLFAGDKR--LNLKQVMDKYRKK--GLHDAAER--IKKLHEELSSICG 332 (339)
T ss_pred -----hhhccCCccccCCCCCHHHHHHHHHHHHhcCCCc--CCHHHHHHHHHhh--hhhHHHHH--HHHHHHHHHHHhC
Confidence 0000000000000012234578899999776543 4444433222221 12333444 4556666666553
No 116
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=80.20 E-value=2.5 Score=43.85 Aligned_cols=90 Identities=14% Similarity=0.062 Sum_probs=67.2
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGA---PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDE 545 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e 545 (576)
.+.+...|.+||.+++|.++..|-...+.-+.. ++.-++--|+.++.+.||.+.-.+|..++.... ....-.
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-----gv~~l~ 332 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-----GVEVLR 332 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-----Ccceee
Confidence 367899999999999999998887766655533 577888899999999999999988887776432 111223
Q ss_pred HHHHHhHHhhccCCCccccH
Q 008155 546 YRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 546 ~~~~f~~~~~Dkd~dG~It~ 565 (576)
.-..| .-.+...+|+|+.
T Consensus 333 v~~lf--~~i~q~d~~ki~~ 350 (412)
T KOG4666|consen 333 VPVLF--PSIEQKDDPKIYA 350 (412)
T ss_pred ccccc--hhhhcccCcceeH
Confidence 33445 3357788888887
No 117
>PRK03826 5'-nucleotidase; Provisional
Probab=80.04 E-value=4 Score=39.83 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHH---HH-----cC--CCHH-HHHhhhhhhcccc
Q 008155 107 RSPLTKALSVALLL---AD-----LQ--MDAE-VISAGLLRQVVES 141 (576)
Q Consensus 107 ~pyi~H~l~Va~iL---~~-----~~--~d~~-~i~AalLHDvvED 141 (576)
+.--.|-+.||.+- +. .| .|++ ++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 45669999998863 32 22 4544 5669999999995
No 118
>PF14658 EF-hand_9: EF-hand domain
Probab=79.35 E-value=1.8 Score=34.62 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=27.5
Q ss_pred cccchhhhhhcccCCCC-CccCHHHHHHHHHH
Q 008155 468 EFDWRDRVFRLLDKNGD-GRISIEELMEVMEE 498 (576)
Q Consensus 468 ~~~~l~~~F~~~D~d~d-G~Is~~EL~~~L~~ 498 (576)
.+..++.+.+.+|+++. |.|+.++|..+|+.
T Consensus 33 ~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 33 EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 35789999999999998 99999999999874
No 119
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=78.25 E-value=2.7 Score=41.91 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=36.0
Q ss_pred CCCChhHHHHHHHHHH----HHcCCCHHHH-HhhhhhhccccCCCC--------HHHHhhhcCHH
Q 008155 105 DSRSPLTKALSVALLL----ADLQMDAEVI-SAGLLRQVVESGGVS--------IQQVRDRIGIG 156 (576)
Q Consensus 105 ~g~pyi~H~l~Va~iL----~~~~~d~~~i-~AalLHDvvEDt~~t--------~~~i~~~fG~~ 156 (576)
.|.--+.|+++|+.+- .+.|.|.+.+ .||||||+..-.... -.++...|+..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~~~~ 97 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKFLED 97 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHHccc
Confidence 5667799999999853 3478898866 599999998653222 12455556554
No 120
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=78.21 E-value=14 Score=35.16 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=61.0
Q ss_pred chhhhhhcccCCCCCccCHHHHHHHHHHcCC-------------------------------------------------
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEVMEELGA------------------------------------------------- 501 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~------------------------------------------------- 501 (576)
.+++-..-||.|+||.|..-|--..++.+|+
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 3556666789999999998886655555331
Q ss_pred ------ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcc---CCCHHHHHHHHhHHhhccCCCccccH
Q 008155 502 ------PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNL---EDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 502 ------~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~---~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.++..+++|..++..+.+.+++.|...++..-...... ....-|+...+ .+ -+|.+|.+++
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y--~L-~~d~dG~l~K 157 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALY--IL-AKDKDGFLSK 157 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHH--HH-HcCcCCcEeH
Confidence 14557999999998888999999999998862210000 01122444444 22 4567888887
No 121
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=76.65 E-value=6.7 Score=36.72 Aligned_cols=60 Identities=8% Similarity=0.215 Sum_probs=46.7
Q ss_pred hhhcccCCCCCccCHHHHHHHHHHcCC-----ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 475 VFRLLDKNGDGRISIEELMEVMEELGA-----PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 475 ~F~~~D~d~dG~Is~~EL~~~L~~lg~-----~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
.|..|-..+...++...|..+++..++ +..++.-+|..+-..+...|+|++|..++..+-
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 344445556668999999999999877 578899999998766777899999999998765
No 122
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=74.60 E-value=8.8 Score=41.77 Aligned_cols=93 Identities=16% Similarity=0.275 Sum_probs=69.1
Q ss_pred hhhhhcccCCCCCccCHHHHHHHHHHcC-CChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccC---C---CHHH
Q 008155 473 DRVFRLLDKNGDGRISIEELMEVMEELG-APGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLE---D---RDDE 545 (576)
Q Consensus 473 ~~~F~~~D~d~dG~Is~~EL~~~L~~lg-~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~---~---~~~e 545 (576)
...|..++.|..|.|+...|..+....- .....+.+++..++..+.|.+.-++|..++..+..-+.+. . ..+-
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~~~~~~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~ 221 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFINYWMRGLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQER 221 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHHHHHhhhhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHH
Confidence 5778999999999999999998765533 3677888999999999999999999999888765333321 1 1123
Q ss_pred HHHHHhHHhh---ccCCCccccH
Q 008155 546 YRTMLDEKLQ---MAGDSGLIQV 565 (576)
Q Consensus 546 ~~~~f~~~~~---Dkd~dG~It~ 565 (576)
|......++| ++-++|.|+.
T Consensus 222 Y~~tvi~rIFy~~nrs~tG~iti 244 (493)
T KOG2562|consen 222 YAETVIQRIFYYLNRSRTGRITI 244 (493)
T ss_pred HHHHHhhhhheeeCCccCCceeH
Confidence 3333333444 9999998887
No 123
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=73.24 E-value=4.8 Score=48.58 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=51.5
Q ss_pred hhhhhhcccCCCCCccCHHHHHHHHHHcCC-ChHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 472 RDRVFRLLDKNGDGRISIEELMEVMEELGA-PGEDAREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 472 l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~-~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
-..-|+.+|+||.|.||..||.++|+.-.. ++.+++.++.-...|.+.-++|++|+.-.+
T Consensus 4059 ssdtfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4059 SSDTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccccchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 345688899999999999999999987654 788899999999899999999999987554
No 124
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=73.23 E-value=2.2 Score=32.29 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=26.0
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHc
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEEL 499 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~l 499 (576)
+.-...+|+..|++++|++..+||..+...+
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 4567789999999999999999999988765
No 125
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=70.36 E-value=11 Score=43.53 Aligned_cols=86 Identities=23% Similarity=0.498 Sum_probs=66.6
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYR 547 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~ 547 (576)
..+..+|+..|++++|.++..+...++..+.. .+..+..+|+..+...++++...+|..+...+. ..+ +..
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~------~rp-ev~ 208 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT------KRP-EVY 208 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc------cCc-hHH
Confidence 57888899999999999999999999888765 677788888888888999999999998877533 333 666
Q ss_pred HHHhHHhhccCCCccccH
Q 008155 548 TMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 548 ~~f~~~~~Dkd~dG~It~ 565 (576)
..|.+ + .++.+.++.
T Consensus 209 ~~f~~--~-s~~~~~ls~ 223 (746)
T KOG0169|consen 209 FLFVQ--Y-SHGKEYLST 223 (746)
T ss_pred HHHHH--H-hCCCCccCH
Confidence 66633 3 223666666
No 126
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=68.82 E-value=4.8 Score=44.86 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=56.8
Q ss_pred chhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 471 WRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 471 ~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
.....|..+|.|+.|+++.++..++|+..+. +++..+++.+..|.+-.|.++..||.+++..+.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 4557788999999999999999999998873 788899999999999999999999999988654
No 127
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=68.66 E-value=12 Score=32.60 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH
Q 008155 504 EDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 504 ~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.....+|...|. ++|.|+-++-..++.. . ....+.+.+++ .+.|.|++|+++.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~----S--~L~~~~L~~IW--~LaD~~~dG~L~~ 62 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMK----S--GLPRDVLAQIW--NLADIDNDGKLDF 62 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHH----T--TSSHHHHHHHH--HHH-SSSSSEEEH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHH----c--CCCHHHHHHHH--hhhcCCCCCcCCH
Confidence 345678888874 6899999999887664 2 36678899999 8899999999999
No 128
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=67.68 E-value=3.5 Score=35.75 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHHHcCC--------CHHHHHhhhhhhccccC
Q 008155 108 SPLTKALSVALLLADLQM--------DAEVISAGLLRQVVESG 142 (576)
Q Consensus 108 pyi~H~l~Va~iL~~~~~--------d~~~i~AalLHDvvEDt 142 (576)
+...|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 457899999987755322 34577899999998754
No 129
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=67.56 E-value=7.8 Score=45.65 Aligned_cols=78 Identities=18% Similarity=0.056 Sum_probs=60.0
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCCC-------hHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCC
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGAP-------GEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDR 542 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~-------~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~ 542 (576)
..++..|+.+|+...|..+.++|...|..+|.. ..++..++...|.+.-|.++|.+|..++..-. .+.++
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~---e~l~~ 823 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY---EDLDT 823 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh---hhhcH
Confidence 678899999999999999999999999999982 22355567777888889999999999987411 12234
Q ss_pred HHHHHHHH
Q 008155 543 DDEYRTML 550 (576)
Q Consensus 543 ~~e~~~~f 550 (576)
..+...+|
T Consensus 824 ~~r~i~s~ 831 (890)
T KOG0035|consen 824 ELRAILAF 831 (890)
T ss_pred HHHHHHHH
Confidence 45556666
No 130
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.55 E-value=12 Score=43.16 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=53.9
Q ss_pred cccchhhhhhccc--CCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 008155 468 EFDWRDRVFRLLD--KNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQV 533 (576)
Q Consensus 468 ~~~~l~~~F~~~D--~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v 533 (576)
+.++..+-|..|+ +-+.|+|+.+.-+.++-..|.+..-+.+++...|.|+||+++..||.-.|+.+
T Consensus 11 T~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQLKPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred chHHHHHHHHHHhccCCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHH
Confidence 3344444445554 46789999999999998889988899999999999999999999998877754
No 131
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=64.88 E-value=5.5 Score=39.15 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHH---HH----cCC--CHH-HHHhhhhhhccccCCCCHHHHh---hhcCHHHHHHHHHhhhhhh-----
Q 008155 108 SPLTKALSVALLL---AD----LQM--DAE-VISAGLLRQVVESGGVSIQQVR---DRIGIGTAHLLHESLRVKN----- 169 (576)
Q Consensus 108 pyi~H~l~Va~iL---~~----~~~--d~~-~i~AalLHDvvEDt~~t~~~i~---~~fG~~Va~lV~~ltk~~~----- 169 (576)
.--.|.+.||.+- +. .|. |+. ....||.||..|-. | .+|. ..+.++...++..|-+.-.
T Consensus 29 nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~F--t-GDI~TPVKy~tPelr~~~~~VE~~m~~~~i~ 105 (215)
T PF12917_consen 29 NVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIF--T-GDIKTPVKYATPELREMLAQVEEEMTENFIK 105 (215)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGT--S-----S-SSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHH--c-CCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 4458888888753 22 343 553 44799999999952 1 2222 2355555555555544211
Q ss_pred -hhhhhcccchHHHHHHHHHHHHhcC--CccEEeehhhhHHhhcc
Q 008155 170 -NVNLKLQVLDDETAAALRKFCLTYY--DIRALILDLAIRLDMMR 211 (576)
Q Consensus 170 -~~~~~~~~~~~~~~~~~r~~lla~~--d~rv~lIKLADrl~Nmr 211 (576)
.+|. ...+.++.++.--. .+...+|+.||.++-+-
T Consensus 106 ~~iP~-------e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 106 KEIPE-------EFQEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp HHS-G-------GGHHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred hhCCH-------HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 1221 22345666665442 37788999999998754
No 132
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=64.75 E-value=26 Score=33.84 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHH---HH-cCCCHH-HHHhhhhhhccccCCC-CHHHHhh---------hcCHHHHHHHHHhhhhhhhhhh
Q 008155 109 PLTKALSVALLL---AD-LQMDAE-VISAGLLRQVVESGGV-SIQQVRD---------RIGIGTAHLLHESLRVKNNVNL 173 (576)
Q Consensus 109 yi~H~l~Va~iL---~~-~~~d~~-~i~AalLHDvvEDt~~-t~~~i~~---------~fG~~Va~lV~~ltk~~~~~~~ 173 (576)
=+.|+++|+..- ++ ++.|.+ .=+||+|||.--.-+. .+-.+.. .+++.+-+--.|-..+..
T Consensus 18 R~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p~~~~~~~~~~~~~~~~~~~~~~~llH~~vgay~~~~---- 93 (187)
T COG1713 18 RFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELPEQKLLKIAKKYGLELDLERESPLLLHGKVGAYLLKE---- 93 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCchhhccChHHHHHHHHHHHHHH----
Confidence 479999999864 43 677765 5579999999865322 2222333 333443333333333332
Q ss_pred hcccchHHHHHHHHHHH---HhcCCccEEeehhhhHHhhccccCCCCHH
Q 008155 174 KLQVLDDETAAALRKFC---LTYYDIRALILDLAIRLDMMRHLDYLPRY 219 (576)
Q Consensus 174 ~~~~~~~~~~~~~r~~l---la~~d~rv~lIKLADrl~Nmr~l~~~~~~ 219 (576)
..+..++.-..+.+.=- ..| ..--.+|-+||.+...|.....++.
T Consensus 94 ~fGi~De~VL~AI~~HTtg~~~m-t~ldkIiyiAD~iEp~R~~pgv~~~ 141 (187)
T COG1713 94 EFGIKDEEVLSAIEYHTTGRKQM-TLLDKILYVADKIEPGRGFPGVDKI 141 (187)
T ss_pred HhCCCcHHHHHHHHHhccCCCcc-chhhheeeeeccccCCCCCCCchhH
Confidence 11222222211221100 011 1123577899999999987765433
No 133
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=64.50 E-value=5.6 Score=41.59 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=57.0
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC-----ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA-----PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDD 544 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~-----~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~ 544 (576)
..+..+|+.+-.+.++......+...-..+.. =...+..||..+|.|.||.++..|...+-. +..+
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l---------dknE 281 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL---------DKNE 281 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc---------cCch
Confidence 56778888776666665555444443222211 156788999999999999999999866544 2333
Q ss_pred HHHHHHhHHhhccCCCccccH
Q 008155 545 EYRTMLDEKLQMAGDSGLIQV 565 (576)
Q Consensus 545 e~~~~f~~~~~Dkd~dG~It~ 565 (576)
.-.+.|. ...|...||.|+.
T Consensus 282 ~CikpFf-nsCD~~kDg~iS~ 301 (434)
T KOG3555|consen 282 ACIKPFF-NSCDTYKDGSIST 301 (434)
T ss_pred hHHHHHH-hhhcccccCcccc
Confidence 3334442 2358888999987
No 134
>PRK00106 hypothetical protein; Provisional
Probab=57.96 E-value=11 Score=42.56 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=28.1
Q ss_pred CCCChhHHHHHHHHHH---H-HcCCCH-HHHHhhhhhhcccc
Q 008155 105 DSRSPLTKALSVALLL---A-DLQMDA-EVISAGLLRQVVES 141 (576)
Q Consensus 105 ~g~pyi~H~l~Va~iL---~-~~~~d~-~~i~AalLHDvvED 141 (576)
.|...+.|.++||.+. + .+|+|. ..-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 4666789999999864 3 578884 45579999997544
No 135
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=57.77 E-value=27 Score=33.96 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCCChhHHHHHHHHH---HH----HcCC--C-HHHHHhhhhhhcccc--CCCC--HHHHhhhcCHHHHHHHHHhhhhhhh
Q 008155 105 DSRSPLTKALSVALL---LA----DLQM--D-AEVISAGLLRQVVES--GGVS--IQQVRDRIGIGTAHLLHESLRVKNN 170 (576)
Q Consensus 105 ~g~pyi~H~l~Va~i---L~----~~~~--d-~~~i~AalLHDvvED--t~~t--~~~i~~~fG~~Va~lV~~ltk~~~~ 170 (576)
.++.-..|.+.||.+ ++ ..|. + ...+..||+||.-|- ++++ ............-.....+.+..-
T Consensus 30 ~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~- 108 (193)
T COG1896 30 NPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLF- 108 (193)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHccc-
Confidence 456777898888774 22 2232 4 447789999999996 3443 122233333333333333332221
Q ss_pred hhhhcccchHHHHHHHHHHHHhcCCccEEeehhhhHHhhc
Q 008155 171 VNLKLQVLDDETAAALRKFCLTYYDIRALILDLAIRLDMM 210 (576)
Q Consensus 171 ~~~~~~~~~~~~~~~~r~~lla~~d~rv~lIKLADrl~Nm 210 (576)
+ . ...-.+-++.+.. .....+.+||.||+|+.+
T Consensus 109 -~----~-p~e~~~~~~~~~~-~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 109 -G----L-PEELLELFREYEK-RSSLEARIVKDADKLELL 141 (193)
T ss_pred -C----C-cHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHH
Confidence 1 0 1122223444332 246678899999999987
No 136
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=57.13 E-value=5.3 Score=43.67 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHc----CCCH----------HHHHhhhhhhc
Q 008155 110 LTKALSVALLLADL----QMDA----------EVISAGLLRQV 138 (576)
Q Consensus 110 i~H~l~Va~iL~~~----~~d~----------~~i~AalLHDv 138 (576)
+.|++.|..+...+ +... .+.+||||||+
T Consensus 53 FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 53 FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 78999999876543 2111 37899999996
No 137
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=55.90 E-value=12 Score=34.97 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=23.1
Q ss_pred hHHHHHHHHHH---H-HcCCCHH-HHHhhhhhhccc
Q 008155 110 LTKALSVALLL---A-DLQMDAE-VISAGLLRQVVE 140 (576)
Q Consensus 110 i~H~l~Va~iL---~-~~~~d~~-~i~AalLHDvvE 140 (576)
+.|.+.||.+. + .++.|++ .-+||||||+=.
T Consensus 10 ~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 10 YQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 68999998864 3 3566654 557999999875
No 138
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=55.64 E-value=3.8 Score=33.09 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=37.1
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCC-------CCcccHHHHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNS-------DGSLSSDEFDL 528 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~-------dG~Isf~EF~~ 528 (576)
.+++..+|+.+ .++.++||.+||+..|. ++.++-+++.+..-. .|.++|..|+.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-----pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT-----PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC-----cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 37899999999 78889999999998753 223344555543222 26688888864
No 139
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.60 E-value=33 Score=30.48 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=43.5
Q ss_pred ChHHHH-HHHHhhCCCCCCcccHHHHHHHHHHHHhhh-----ccCC-CHHHHHHHHhHHhh--ccCCCccccH--HHHH
Q 008155 502 PGEDAR-EMMQLLDSNSDGSLSSDEFDLFQKQVEFMR-----NLED-RDDEYRTMLDEKLQ--MAGDSGLIQV--YSTE 569 (576)
Q Consensus 502 ~~~~v~-~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~-----~~~~-~~~e~~~~f~~~~~--Dkd~dG~It~--~l~~ 569 (576)
+++.++ ..|+..|.|++|.++=-|.++.++...--. +.+. .+.++......-+. |.|+||+|+. +++.
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 344433 378888999999999999999888765211 1122 22344444433222 8899999998 6664
No 140
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.73 E-value=3.8 Score=48.71 Aligned_cols=65 Identities=29% Similarity=0.449 Sum_probs=58.3
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
..+.++|...|++.+|.|+..+...++...|.+...+..++...|..++|.+++++|.-.+..+.
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 45667899999999999999999999988888889999999999999999999999988777543
No 141
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=53.74 E-value=31 Score=32.27 Aligned_cols=90 Identities=6% Similarity=0.052 Sum_probs=55.4
Q ss_pred hhhccccCCCCHHHHhhhcCHHHHHHHHHhhhhhhhhhhhcccc--hHHHHHHHHHHHHhc-CCccEEeehhhhHHhhcc
Q 008155 135 LRQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKNNVNLKLQVL--DDETAAALRKFCLTY-YDIRALILDLAIRLDMMR 211 (576)
Q Consensus 135 LHDvvEDt~~t~~~i~~~fG~~Va~lV~~ltk~~~~~~~~~~~~--~~~~~~~~r~~lla~-~d~rv~lIKLADrl~Nmr 211 (576)
+.|.+-++..|.++|++.||.++.+.+.-+.|..- +..+.... .+.-...|+...... +++.+-+-.|+|.++
T Consensus 22 V~~~Ls~~W~T~~El~e~~G~d~~~~L~~LkK~gL-iE~qWrmP~pG~kPeKEYhtsYs~vqaNFqcs~~DLsdii~--- 97 (160)
T PF09824_consen 22 VYDELSKGWMTEEELEEKYGKDVRESLLILKKGGL-IESQWRMPEPGEKPEKEYHTSYSKVQANFQCSMEDLSDIIY--- 97 (160)
T ss_pred HHHHHHhccCCHHHHHHHHCcCHHHHHHHHHHcCc-hhhccccCCCCCCchHHHHhhHhheeeeeEeeHHHHHHHHh---
Confidence 34666778899999999999999888887766543 33222111 111111233333333 567777777888776
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 008155 212 HLDYLPRYQQLMISLEVM 229 (576)
Q Consensus 212 ~l~~~~~~k~~~~a~Et~ 229 (576)
+..++.+.-+.+..+..
T Consensus 98 -i~f~~deel~~~~e~i~ 114 (160)
T PF09824_consen 98 -IAFMSDEELRDYVEKIE 114 (160)
T ss_pred -eeecCHHHHHHHHHHHH
Confidence 56677766555555444
No 142
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=53.49 E-value=9.2 Score=30.33 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHHHHH----cCCCHH-HHHhhhhhhccc
Q 008155 107 RSPLTKALSVALLLAD----LQMDAE-VISAGLLRQVVE 140 (576)
Q Consensus 107 ~pyi~H~l~Va~iL~~----~~~d~~-~i~AalLHDvvE 140 (576)
.+-..|.+.|+..... ++.|.+ ...||||||+=.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 3446788888876443 566664 567999999743
No 143
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=49.81 E-value=29 Score=28.39 Aligned_cols=56 Identities=13% Similarity=0.331 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccC----CCccccH
Q 008155 505 DAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAG----DSGLIQV 565 (576)
Q Consensus 505 ~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd----~dG~It~ 565 (576)
++..+|..+.. +.+.++.++|..|+.... +....+.++....+.+ |..+ ..+.+|.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ--~~~~~~~~~~~~li~~--~~~~~~~~~~~~lt~ 60 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQ--GEPRLTDEQAKELIEK--FEPDERNRQKGQLTL 60 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTS--S-TTSSHHHHHHHHHH--HHHHHHHHCTTEEEH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHh--ccccCcHHHHHHHHHH--HccchhhcccCCcCH
Confidence 46788999955 788999999999998654 2212356777777744 5322 4577777
No 144
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=48.82 E-value=20 Score=33.74 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=33.5
Q ss_pred CChhHHHHHHHHHH---H-HcC-----CCH-HHHHhhhhhhccccCC--CC----HHHHhhh--cCHHHHHHHHH
Q 008155 107 RSPLTKALSVALLL---A-DLQ-----MDA-EVISAGLLRQVVESGG--VS----IQQVRDR--IGIGTAHLLHE 163 (576)
Q Consensus 107 ~pyi~H~l~Va~iL---~-~~~-----~d~-~~i~AalLHDvvEDt~--~t----~~~i~~~--fG~~Va~lV~~ 163 (576)
...+.|.+.|+.+. + .++ .|. ...+||||||+=.... .. -.++-.. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44579999999853 3 344 454 4567999999865321 11 1123322 45667777753
No 145
>PRK10119 putative hydrolase; Provisional
Probab=48.18 E-value=42 Score=33.66 Aligned_cols=52 Identities=17% Similarity=0.047 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHH---HH-HcCCCHH-HHHhhhhhhccc
Q 008155 85 LLFKALKLSIPMLQSLPLSPDSRSPLTKALSVALL---LA-DLQMDAE-VISAGLLRQVVE 140 (576)
Q Consensus 85 ~l~~A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~i---L~-~~~~d~~-~i~AalLHDvvE 140 (576)
.+.++..|+...+.+. . +|-- +.|...|... ++ .-+.|.+ +.+|||||||..
T Consensus 6 ~~~~~~~~v~~~l~~~-~--~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ-D--AAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC-C--CccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 4556667776655542 1 3333 5677777653 33 3366666 457999999974
No 146
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=47.82 E-value=12 Score=35.44 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHH---HHH-cC--CCH-HHHHhhhhhhcccc--CCCCHHH-H-hhhcCHHHHHHHHHhhhhhhhhhhhc
Q 008155 107 RSPLTKALSVALL---LAD-LQ--MDA-EVISAGLLRQVVES--GGVSIQQ-V-RDRIGIGTAHLLHESLRVKNNVNLKL 175 (576)
Q Consensus 107 ~pyi~H~l~Va~i---L~~-~~--~d~-~~i~AalLHDvvED--t~~t~~~-i-~~~fG~~Va~lV~~ltk~~~~~~~~~ 175 (576)
+.--.|...||.+ |+. .+ .|. .++..||+||+.|- ++++... + ...+-..-...+..+... +|
T Consensus 21 EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~---Lp--- 94 (165)
T PF13023_consen 21 ESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL---LP--- 94 (165)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT---SS---
T ss_pred ccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH---hh---
Confidence 4556899999886 333 34 565 57889999999996 4555433 0 001111111112211111 11
Q ss_pred ccchHHHHHHHHHHHHhc---CCccEEeehhhhHHhhccc
Q 008155 176 QVLDDETAAALRKFCLTY---YDIRALILDLAIRLDMMRH 212 (576)
Q Consensus 176 ~~~~~~~~~~~r~~lla~---~d~rv~lIKLADrl~Nmr~ 212 (576)
......++.+..-+ ..+.+.++|-+|+|+-+-.
T Consensus 95 ----~~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~lq 130 (165)
T PF13023_consen 95 ----EELQEELKELWEEFEEGESPEAKLVKAADKLEPLLQ 130 (165)
T ss_dssp ----CHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHHH
Confidence 11223344443322 4667788999999986543
No 147
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=44.61 E-value=13 Score=41.77 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=45.7
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQV 533 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v 533 (576)
+.+...|..||.|+||.++.+||..+....+..+.--...-...-.+..|.+++.-|+..|...
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHH
Confidence 6788999999999999999999999998876521000000011123478999999999988743
No 148
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=44.05 E-value=78 Score=26.87 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=37.6
Q ss_pred CCCccCHHHHHHHH---HH-cCCChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 483 GDGRISIEELMEVM---EE-LGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 483 ~dG~Is~~EL~~~L---~~-lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
-||.++.+|...+- .. ++.++.+...++..+....+...++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 47899988876654 34 5667788888888887766677889999877664
No 149
>PRK12704 phosphodiesterase; Provisional
Probab=43.57 E-value=26 Score=39.53 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=26.1
Q ss_pred CCCChhHHHHHHHHHH---H-HcCCCHH-HHHhhhhhhccc
Q 008155 105 DSRSPLTKALSVALLL---A-DLQMDAE-VISAGLLRQVVE 140 (576)
Q Consensus 105 ~g~pyi~H~l~Va~iL---~-~~~~d~~-~i~AalLHDvvE 140 (576)
.|...+.|.+.||.+. + .+|+|.+ ...||||||+=.
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 3445678999999853 3 4788765 446999999654
No 150
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=43.16 E-value=27 Score=39.30 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHH---H-HcCCCHHH-HHhhhhhhccc
Q 008155 106 SRSPLTKALSVALLL---A-DLQMDAEV-ISAGLLRQVVE 140 (576)
Q Consensus 106 g~pyi~H~l~Va~iL---~-~~~~d~~~-i~AalLHDvvE 140 (576)
|.-.+.|.+.||.+. + .+|+|++. ..||||||+=.
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 334679999999963 3 47888754 46999999854
No 151
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=41.93 E-value=11 Score=36.47 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=43.7
Q ss_pred hhhhhhcccC-CCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 472 RDRVFRLLDK-NGDGRISIEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 472 l~~~F~~~D~-d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
+..-|..+|+ -.||++|-.||.-+-..+-.-+.-+..+|+..|.|+||.|+.+||-..+.
T Consensus 189 v~wqf~qld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 189 VHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeeeeccccCCCccccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 4456777886 56899999998654222211244567899999999999999999976654
No 152
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=40.69 E-value=87 Score=26.64 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=40.8
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHH-------cCC------ChHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEE-------LGA------PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~-------lg~------~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~ 532 (576)
++++-+|+.+ .|++|.++...|...|.. +|. .+..++..|+.. +..-.|+.++|+.-+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 5677889988 688999999999888766 232 467788888875 35567999999987763
No 153
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=40.02 E-value=27 Score=37.00 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHH----HcCCCHHHH-Hhhhhhhcc
Q 008155 110 LTKALSVALLLA----DLQMDAEVI-SAGLLRQVV 139 (576)
Q Consensus 110 i~H~l~Va~iL~----~~~~d~~~i-~AalLHDvv 139 (576)
++|.++|+.+-. .++.+.+.+ +|||+||+=
T Consensus 64 ~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 64 LTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 799999999644 356665544 699999974
No 154
>PLN02952 phosphoinositide phospholipase C
Probab=39.30 E-value=1.1e+02 Score=35.13 Aligned_cols=51 Identities=12% Similarity=0.265 Sum_probs=42.1
Q ss_pred CCCccCHHHHHHHHHHcCC----ChHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 008155 483 GDGRISIEELMEVMEELGA----PGEDAREMMQLLDSNSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 483 ~dG~Is~~EL~~~L~~lg~----~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~ 534 (576)
+.|.++.++|..+.+.+.. +..++..+|..+..+ ++.++.++|..|+....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhC
Confidence 4689999999988777653 578999999999654 46899999999999765
No 155
>PRK12705 hypothetical protein; Provisional
Probab=37.85 E-value=36 Score=38.18 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=27.7
Q ss_pred CCCChhHHHHHHHHHH---H-HcCCCHH-HHHhhhhhhcccc
Q 008155 105 DSRSPLTKALSVALLL---A-DLQMDAE-VISAGLLRQVVES 141 (576)
Q Consensus 105 ~g~pyi~H~l~Va~iL---~-~~~~d~~-~i~AalLHDvvED 141 (576)
.|...+.|.+.||.+. + .+|+|++ ...||||||+=.-
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 4555789999999964 3 4788765 4579999998663
No 156
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=37.25 E-value=3.6 Score=30.42 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.2
Q ss_pred CCCCCccchhHHHHHH
Q 008155 51 PLPSTAGEKMVVKLVG 66 (576)
Q Consensus 51 ~~~~~~~~~~~~e~~~ 66 (576)
+.|.+|||++|+|+-.
T Consensus 22 RvPleGGGRLVvEl~~ 37 (51)
T PF11314_consen 22 RVPLEGGGRLVVELNP 37 (51)
T ss_pred EEecCCCcEEEEEeCH
Confidence 4678999999999853
No 157
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=36.83 E-value=28 Score=39.61 Aligned_cols=57 Identities=28% Similarity=0.461 Sum_probs=47.8
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCC--ChHHHHHHHHhhCCCCCCcccHHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGA--PGEDAREMMQLLDSNSDGSLSSDEF 526 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~--~~~~v~~l~~~~D~n~dG~Isf~EF 526 (576)
...+.++|+.+|.+++|.|+..+|...|..+.. -.+.+.-+++.+|.+++ ..+.+|-
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 357889999999999999999999999988754 35677789999999988 7777765
No 158
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=36.55 E-value=36 Score=20.91 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=7.2
Q ss_pred cCCCCCccCHHHHH
Q 008155 480 DKNGDGRISIEELM 493 (576)
Q Consensus 480 D~d~dG~Is~~EL~ 493 (576)
|.|+||.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 44556666555543
No 159
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=35.85 E-value=64 Score=32.50 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHcCCCHH-HHHhhhhhhc
Q 008155 86 LFKALKLSIPMLQSLPLSPDSRSPLTKALSVALLLADLQMDAE-VISAGLLRQV 138 (576)
Q Consensus 86 l~~A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL~~~~~d~~-~i~AalLHDv 138 (576)
+.+|+++.-..-.. .+.....|=|.|++..|..++.-..+++ ...+||+||.
T Consensus 41 i~eA~~~L~~LvDe-SDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDE-SDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---T-T-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccC-ccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 55566654443322 2222567889999999999987645555 4579999985
No 160
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=33.53 E-value=1.1e+02 Score=29.23 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=41.7
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCC---------ChHHHHHHHHhhCCCCCCcccHHHHHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGA---------PGEDAREMMQLLDSNSDGSLSSDEFDLF 529 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---------~~~~v~~l~~~~D~n~dG~Isf~EF~~~ 529 (576)
.+++.++|..++..+.+.+|..|+.+++..-.. ..-++..++... .+.||.+..|.-..+
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 467889999999988899999999999877322 122333333332 567888887765544
No 161
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=33.03 E-value=1.5e+02 Score=34.50 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=58.5
Q ss_pred HHHHHhhhcCCCCCCCCCc-------------cccchhhhhhcccCCCCCccCHHHHHHHHHHcCC----ChHHHHHHHH
Q 008155 449 AELAALRLKDIPSTNHKGF-------------EFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA----PGEDAREMMQ 511 (576)
Q Consensus 449 ~elA~~~F~~~d~~~~~~i-------------~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~----~~~~v~~l~~ 511 (576)
...++..|.+.+..+.+.+ ....+...|..+- ++.+.++.++|..+|+..+. +.+.++++++
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~ 249 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYS-HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIE 249 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHh-CCCCccCHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 3466667777666666554 2235666666553 44889999999999988753 5777888887
Q ss_pred hhCCC----CCCcccHHHHHHHHHH
Q 008155 512 LLDSN----SDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 512 ~~D~n----~dG~Isf~EF~~~l~~ 532 (576)
.+... ..+.++++.|..|+..
T Consensus 250 ~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 250 RYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HhhhhhhccccceecHHHHHHHhcC
Confidence 77544 3456999999998875
No 162
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=32.81 E-value=22 Score=30.28 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=10.1
Q ss_pred HHHHHhhhhhcc
Q 008155 246 FELEDLSFRYLF 257 (576)
Q Consensus 246 ~eLEdl~f~~l~ 257 (576)
.+|||+||+|-|
T Consensus 20 t~LED~CfkfNY 31 (109)
T PF04753_consen 20 TELEDFCFKFNY 31 (109)
T ss_pred chHHHHHHHhcc
Confidence 589999999765
No 163
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=32.08 E-value=57 Score=28.25 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=42.9
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCCChHHHHHHHHhhCC---CCCCcccHHHHHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGAPGEDAREMMQLLDS---NSDGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~---n~dG~Isf~EF~~~l~~v~ 534 (576)
..+++-|..+-. ||.++..+|.+.+. +..+.+...++|..+-. -..+.|+.+|...|+.++.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG-M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG-MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC-CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 456677777755 89999999998764 33467778888877631 1256899999999999764
No 164
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=30.94 E-value=46 Score=35.28 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHH---H-HcCCCH-HHHHhhhhhhccc
Q 008155 107 RSPLTKALSVALLL---A-DLQMDA-EVISAGLLRQVVE 140 (576)
Q Consensus 107 ~pyi~H~l~Va~iL---~-~~~~d~-~~i~AalLHDvvE 140 (576)
.+-..|.+.||.+. + .+|.|. +.-.||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 34569999999854 3 356664 4557999999765
No 165
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.79 E-value=98 Score=29.42 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHcCCCHH-HHHhhhhhhccccCCC
Q 008155 66 GAFNELTERMNVLSSSSSRLLFKALKLSIPMLQSLPLSPDSRSPLTKALSVALLLADLQMDAE-VISAGLLRQVVESGGV 144 (576)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL~~~~~d~~-~i~AalLHDvvEDt~~ 144 (576)
..|..|++.++..++. .++.++. .+..+--|..-.-.-|.-+++.+..+..+--|++ +-.|++.||+|-||.-
T Consensus 7 ~~wq~l~q~lg~~~~~---~~f~~L~---aaY~~~dRHYH~l~HI~a~L~~~~~~r~la~dp~~VElA~WfHD~iYDtqa 80 (208)
T COG4339 7 YQWQQLLQNLGVDKTT---QVFTHLI---AAYSSPDRHYHTLKHISAVLQTIQTLRTLAQDPPGVELAAWFHDVIYDTQA 80 (208)
T ss_pred HhHHHHHHHhcCCCch---HHHHHHH---HHhcCCccchhhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhhhhc
Confidence 4688888888754442 2333333 3333433331121223333444444444444544 5579999999999754
No 166
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=30.29 E-value=47 Score=34.90 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHc-----CCCHH-HHHhhhhhhcc
Q 008155 109 PLTKALSVALLLADL-----QMDAE-VISAGLLRQVV 139 (576)
Q Consensus 109 yi~H~l~Va~iL~~~-----~~d~~-~i~AalLHDvv 139 (576)
.+.|-++|+.+...+ .+|.+ .+++|||||+=
T Consensus 160 LleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiG 196 (314)
T PRK13480 160 LAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLG 196 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhh
Confidence 579999999987554 35766 66788999975
No 167
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=30.20 E-value=48 Score=36.38 Aligned_cols=30 Identities=37% Similarity=0.389 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHH----HcCCCHH-HHHhhhhhhcc
Q 008155 110 LTKALSVALLLA----DLQMDAE-VISAGLLRQVV 139 (576)
Q Consensus 110 i~H~l~Va~iL~----~~~~d~~-~i~AalLHDvv 139 (576)
++|.++||.+-. .++.+.+ +.+|||+||+=
T Consensus 72 ltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 72 LTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 699999999754 3566544 55799999974
No 168
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=29.39 E-value=46 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=22.9
Q ss_pred ChHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 502 PGEDAREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 502 ~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
+++.++.++..+-.|..|+|.|.||+.-+.
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 678899999999999999999999987655
No 169
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=29.38 E-value=1.1e+02 Score=29.12 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=42.3
Q ss_pred CCChhHHHHHHHHHH---H-HcCCCHHHH-Hhhhhhhcccc-C--------CCCHHHHh-hhcCHHHHHHHHHhhhhhh
Q 008155 106 SRSPLTKALSVALLL---A-DLQMDAEVI-SAGLLRQVVES-G--------GVSIQQVR-DRIGIGTAHLLHESLRVKN 169 (576)
Q Consensus 106 g~pyi~H~l~Va~iL---~-~~~~d~~~i-~AalLHDvvED-t--------~~t~~~i~-~~fG~~Va~lV~~ltk~~~ 169 (576)
.+..+-||+.|+..+ + ++|-|++.- .+|||||.=-+ | -.+.+-++ +...++|++.|.+-.....
T Consensus 45 ~e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~~~~ 123 (212)
T COG2316 45 SESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAAYTG 123 (212)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhhhhc
Confidence 367899999988754 3 689988755 69999997432 2 22233333 3567888888876544443
No 170
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=27.01 E-value=40 Score=37.04 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHH----c-C---------C-CHH-HHHhhhhhhcc
Q 008155 110 LTKALSVALLLAD----L-Q---------M-DAE-VISAGLLRQVV 139 (576)
Q Consensus 110 i~H~l~Va~iL~~----~-~---------~-d~~-~i~AalLHDvv 139 (576)
++|.++||.+-.. + + . +.+ +-+|||+||+=
T Consensus 60 ltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiG 105 (432)
T PRK05318 60 LTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIG 105 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCC
Confidence 6999999997543 3 1 1 344 33789999974
No 171
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=26.50 E-value=1.2e+02 Score=34.63 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=39.8
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCcccc
Q 008155 503 GEDAREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQ 564 (576)
Q Consensus 503 ~~~v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It 564 (576)
....+.+|..+|.+.+|.|+|.+|+..+..+. . .+..+.+.-.| +++|.+++ ..+
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~--~--~~~~ek~~l~y--~lh~~p~~-~~d 608 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILK--A--GDALEKLKLLY--KLHDPPAD-ELD 608 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHH--h--hhHHHHHHHHH--hhccCCcc-ccc
Confidence 44578899999999999999999999887643 1 23344556666 66777766 443
No 172
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=3.9e+02 Score=27.53 Aligned_cols=112 Identities=13% Similarity=-0.018 Sum_probs=66.3
Q ss_pred HHhhccccCCCCHHHHHHHHHHHHHHHHhHHhHhCchhHHHHHHHhhhhhcc-----cchHHHHHHHHHhhhcCcH----
Q 008155 206 RLDMMRHLDYLPRYQQLMISLEVMKIHAPLAHAVATNYLSFELEDLSFRYLF-----PFSYLFVDTWLRSHETGSK---- 276 (576)
Q Consensus 206 rl~Nmr~l~~~~~~k~~~~a~Et~~iy~pLA~rlG~~~lk~eLEdl~f~~l~-----P~~y~~i~~~l~~~~~~~~---- 276 (576)
+.+|.--+..-+++++.++..|++++.+ ..-|...+-..+--+.|++++ ++=|.+.++..++.....-
T Consensus 14 q~~~~~~~~t~ded~~~~~~~~~~~lls---~~y~~~~~~a~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~vr 90 (285)
T COG1578 14 QAVNAVKLATDDEDLRSRIMSEALKLLS---EEYGESAVPAIAGTLIHREVYKILGNEDPYKEYKRRANEIALKVLPKVR 90 (285)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH---hhhCcCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445678999999999997754 446666666666666666654 4567766666554322111
Q ss_pred ----HHHHHHHHHHHHHHHhcccccccccceeEEe-eccCcchHHHHHhhcCCCC
Q 008155 277 ----PLIDIYKEQLLQCLKTDATLADLVEDVSVQG-RYKSRYSTMKKLLKDGRIP 326 (576)
Q Consensus 277 ----~~~~~~~~~l~~~l~~~~il~~~~~~~~v~~-R~K~~~Si~~Kl~r~~~~~ 326 (576)
..-..++..++-.+..+- +++.|.| +...+....+|+...+...
T Consensus 91 ~~~~~~~~dl~~Avk~ai~GN~------iDfgv~G~~~~~lee~~~~~~~~~l~i 139 (285)
T COG1578 91 ENIEDTPEDLKTAVKLAIVGNV------IDFGVLGFSPFDLEEEVEKLLDAELYI 139 (285)
T ss_pred hcccCChHHHHHHHHHHHHhcc------eeeccccCCHhHHHHHHHHhhcCcccc
Confidence 111122223332222232 4889997 8888888888887765443
No 173
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=25.39 E-value=2.2e+02 Score=30.23 Aligned_cols=140 Identities=17% Similarity=0.105 Sum_probs=73.6
Q ss_pred CChh-HHHHHHHHHHH----HcCCCHH----HHHhhhhhhccc----------cCCCCHHHHh---hh--cCHHHHHHHH
Q 008155 107 RSPL-TKALSVALLLA----DLQMDAE----VISAGLLRQVVE----------SGGVSIQQVR---DR--IGIGTAHLLH 162 (576)
Q Consensus 107 ~pyi-~H~l~Va~iL~----~~~~d~~----~i~AalLHDvvE----------Dt~~t~~~i~---~~--fG~~Va~lV~ 162 (576)
.+|. .|...||.... .+|++.+ .-.||+|||+=. -+.+|.+|-+ .+ +|..+..
T Consensus 146 d~~t~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~~iL~--- 222 (344)
T COG2206 146 DDYTYGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGYDILK--- 222 (344)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHHHHHH---
Confidence 5554 89999998643 3787654 457999999622 2567766632 22 4444332
Q ss_pred HhhhhhhhhhhhcccchHHHHHHHHH--HH--Hhc--CCccEEeehhhhHHhhccccCCCCHHHHHHHHHHHHHHHHhHH
Q 008155 163 ESLRVKNNVNLKLQVLDDETAAALRK--FC--LTY--YDIRALILDLAIRLDMMRHLDYLPRYQQLMISLEVMKIHAPLA 236 (576)
Q Consensus 163 ~ltk~~~~~~~~~~~~~~~~~~~~r~--~l--la~--~d~rv~lIKLADrl~Nmr~l~~~~~~k~~~~a~Et~~iy~pLA 236 (576)
.+......+... -....|.+-- +- +.- -++-+.+|.+||-.+.|.+=. |+++..-..|++
T Consensus 223 ~~~~~~~~~~~~----~l~HHEr~DGtGYP~GL~GeeI~l~aRIiAVADvydAlts~R---pYkka~s~~~Al------- 288 (344)
T COG2206 223 DLPEFLESVRAV----ALRHHERWDGTGYPRGLKGEEIPLEARIIAVADVYDALTSDR---PYKKAKSPEEAL------- 288 (344)
T ss_pred hcccccHHHHHH----HHHhhhccCCCCCCCCCCcccCChHhHHHHHhhHHHHHhcCC---CCcccCCHHHHH-------
Confidence 222111100000 0000000000 00 000 133466889999999998432 333333333444
Q ss_pred hHhCchhHHHHHHHhhhhhcccchHHHHHHHHHhhh
Q 008155 237 HAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHE 272 (576)
Q Consensus 237 ~rlG~~~lk~eLEdl~f~~l~P~~y~~i~~~l~~~~ 272 (576)
.+|...+.+.++|.....+.+.+....
T Consensus 289 ---------~~l~~~~~~~fDp~vv~~~~~~~~~~~ 315 (344)
T COG2206 289 ---------EELRKNSGGKFDPKVVDAFLKALSKYP 315 (344)
T ss_pred ---------HHHHHhcCCCCCHHHHHHHHHHHhhcC
Confidence 345557888888888888777776543
No 174
>PLN02222 phosphoinositide phospholipase C 2
Probab=24.87 E-value=1.2e+02 Score=34.66 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=47.7
Q ss_pred ccchhhhhhcccCCCCCccCHHHHHHHHHHcCC----ChHHHHHHHHhhCC-CCCCcccHHHHHHHHHH
Q 008155 469 FDWRDRVFRLLDKNGDGRISIEELMEVMEELGA----PGEDAREMMQLLDS-NSDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 469 ~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~----~~~~v~~l~~~~D~-n~dG~Isf~EF~~~l~~ 532 (576)
..++..+|..+-. ++.++.++|..+|...+. +.+.++.+++.+.. ...+.++++.|..++..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3578888888743 479999999999987543 46678888887632 24567999999999875
No 175
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=24.82 E-value=65 Score=29.68 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=28.3
Q ss_pred CCccCHHHHHHHHHHcCCChHHHHHHHHhhCC-------CCCCcccHHHHHHHHHHH
Q 008155 484 DGRISIEELMEVMEELGAPGEDAREMMQLLDS-------NSDGSLSSDEFDLFQKQV 533 (576)
Q Consensus 484 dG~Is~~EL~~~L~~lg~~~~~v~~l~~~~D~-------n~dG~Isf~EF~~~l~~v 533 (576)
=+.||..||.+.-+-...+...++.+++.|.. +.++.|+|+.|..||...
T Consensus 5 ~~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH
Confidence 36788888887533322244566777777732 344579999999999864
No 176
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=24.69 E-value=2.2e+02 Score=32.50 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=38.0
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHH-cCC--C---hHHHHHHHHhhCCC--CCCcccHHHHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEE-LGA--P---GEDAREMMQLLDSN--SDGSLSSDEFDLFQ 530 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~-lg~--~---~~~v~~l~~~~D~n--~dG~Isf~EF~~~l 530 (576)
..+.++|++.|.|+||.+|-.|+-..=.. ++. . .+++...++..-++ .++.++..-|+.+-
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 56788999999999999999998776433 333 2 23344444443222 23456666666543
No 177
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=24.36 E-value=54 Score=34.39 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=43.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHhhccCCCccccH--HHHHhc
Q 008155 506 AREMMQLLDSNSDGSLSSDEFDLFQKQVEFMRNLEDRDDEYRTMLDEKLQMAGDSGLIQV--YSTELG 571 (576)
Q Consensus 506 v~~l~~~~D~n~dG~Isf~EF~~~l~~v~~~~~~~~~~~e~~~~f~~~~~Dkd~dG~It~--~l~~lG 571 (576)
+...|..+|.|.++.|.-.|+..|-..+.... ....-.+..| ++.|.|+|-+|+. .+.-||
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s---~~rkC~rk~~--~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKS---KPRKCSRKFF--KYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhc---cHHHHhhhcc--hhcccCCCceecHHHHhhhhc
Confidence 45578899999999999999887766543111 1122334455 5669999999999 777666
No 178
>PF12522 UL73_N: Cytomegalovirus glycoprotein N terminal; InterPro: IPR021003 This domain family is found in viruses, and is approximately 30 amino acids in length. The signature is found in association with PF03554 from PFAM. This family is an envelope glycoprotein of (Human herpesvirus 5) [].
Probab=24.15 E-value=36 Score=21.88 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=7.4
Q ss_pred hhhcCCCcccCCCCCCC
Q 008155 36 IRAESSSSSFASSPAPL 52 (576)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ 52 (576)
+.+.||+.+++.|+++.
T Consensus 8 v~~gSs~n~sSTsts~t 24 (27)
T PF12522_consen 8 VAAGSSGNNSSTSTSAT 24 (27)
T ss_pred EEeccccCCcccccccc
Confidence 44444444444444443
No 179
>PLN02228 Phosphoinositide phospholipase C
Probab=23.95 E-value=1.5e+02 Score=33.88 Aligned_cols=63 Identities=14% Similarity=0.290 Sum_probs=48.2
Q ss_pred cccchhhhhhcccCCCCCccCHHHHHHHHHHcCC----ChHHHHHHHHhhCCC----CCCcccHHHHHHHHHH
Q 008155 468 EFDWRDRVFRLLDKNGDGRISIEELMEVMEELGA----PGEDAREMMQLLDSN----SDGSLSSDEFDLFQKQ 532 (576)
Q Consensus 468 ~~~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~----~~~~v~~l~~~~D~n----~dG~Isf~EF~~~l~~ 532 (576)
...++..+|..+-. ++.++.++|..+|...+. +.+.+..++..+... ..|.++++.|..++..
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34678888888743 368999999999987643 456788888887643 3467999999999874
No 180
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.75 E-value=44 Score=35.61 Aligned_cols=58 Identities=28% Similarity=0.236 Sum_probs=43.1
Q ss_pred cchhhhhhcccCCCCCccCHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCCCcccHHHHH
Q 008155 470 DWRDRVFRLLDKNGDGRISIEELMEVMEELGA---PGEDAREMMQLLDSNSDGSLSSDEFD 527 (576)
Q Consensus 470 ~~l~~~F~~~D~d~dG~Is~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~dG~Isf~EF~ 527 (576)
+++++.|+.+|+.++|+|+.+-++.+|..+.. .++.+.-+-+.+|+.+-|-|-..+|.
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 67889999999999999999999999998873 34555555555666655555555543
No 181
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=23.60 E-value=85 Score=28.08 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=33.8
Q ss_pred CCCccCHHHHHHHHHHc----CCChHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 008155 483 GDGRISIEELMEVMEEL----GAPGEDAREMMQLLDSNSDGSLSSDEFDLFQK 531 (576)
Q Consensus 483 ~dG~Is~~EL~~~L~~l----g~~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~ 531 (576)
-||.|+.+|...+...+ +.+....+.++..++.-.....++.+|+..+.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 57999999988776655 55677777777777665555788888876555
No 182
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=23.30 E-value=3.3e+02 Score=25.46 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHcCCCHHHHHhhhhhh---ccccCCCCHHHHhhhcCHHH
Q 008155 81 SSSRLLFKALKLSIPMLQSLPLSPDSRSPLTKALSVALLLADLQMDAEVISAGLLRQ---VVESGGVSIQQVRDRIGIGT 157 (576)
Q Consensus 81 ~~~~~l~~A~~~A~~~h~gq~rk~~g~pyi~H~l~Va~iL~~~~~d~~~i~AalLHD---vvEDt~~t~~~i~~~fG~~V 157 (576)
.+.+...+|+..-.-.- .| | +.+.|+++....|. .++|+| .-..+..+..+++..++..+
T Consensus 22 ~~~~~~~~al~~v~~W~---~R---~-~~lP~aVe~Ta~Ll----------~~~l~d~~~~~~~~~~~~~~lr~~ysmai 84 (154)
T PF04031_consen 22 DDPESRRRALERVSAWK---SR---G-SKLPHAVESTASLL----------EAQLQDEEDPSSSGARSEQELRLSYSMAI 84 (154)
T ss_pred CCHHHHHHHHHHHHHHH---Hc---C-CCCcHHHHHHHHHH----------HHHccCccccccccCCCHHHHHHHHHHhH
Confidence 46677777877654331 12 3 56779998887654 456666 23345677788999999999
Q ss_pred HHHHHHhhhhhh
Q 008155 158 AHLLHESLRVKN 169 (576)
Q Consensus 158 a~lV~~ltk~~~ 169 (576)
.+.|.|++...+
T Consensus 85 vRfVNgl~D~~Q 96 (154)
T PF04031_consen 85 VRFVNGLVDPSQ 96 (154)
T ss_pred HHHHHHhhhHhh
Confidence 999999988765
No 183
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=23.19 E-value=1.6e+02 Score=21.55 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhhCCCCCCcccHHHHHHH
Q 008155 489 IEELMEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFDLF 529 (576)
Q Consensus 489 ~~EL~~~L~~lg~~~~~v~~l~~~~D~n~dG~Isf~EF~~~ 529 (576)
.+|....|..+|++..+++..+..+.. ...++.++.++.
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 467888999999999999888888864 334666666543
No 184
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.00 E-value=88 Score=21.21 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.3
Q ss_pred CCcccHHHHHHHHHHHH
Q 008155 518 DGSLSSDEFDLFQKQVE 534 (576)
Q Consensus 518 dG~Isf~EF~~~l~~v~ 534 (576)
.|.|+++|++.+...+.
T Consensus 2 ~~~i~~~~~~d~a~rv~ 18 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVN 18 (33)
T ss_pred CceecHHHHHHHHHHHH
Confidence 58899999999888765
No 185
>PF14473 RD3: RD3 protein
Probab=22.07 E-value=1.5e+02 Score=27.20 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=31.4
Q ss_pred HHHHHHhhhhhcccchHHHHHHHHHhh----hcCcHHHHHHHHHHHHHHHHh
Q 008155 245 SFELEDLSFRYLFPFSYLFVDTWLRSH----ETGSKPLIDIYKEQLLQCLKT 292 (576)
Q Consensus 245 k~eLEdl~f~~l~P~~y~~i~~~l~~~----~~~~~~~~~~~~~~l~~~l~~ 292 (576)
+.+|||||=+ +.|..-..+...+++. .+...++...++..|++.|.+
T Consensus 77 rlqLE~lCsk-i~P~~~g~vI~RFRellae~e~~~~Ev~~iFr~vl~e~l~~ 127 (133)
T PF14473_consen 77 RLQLEDLCSK-IPPCECGPVISRFRELLAENEPEVWEVPRIFRSVLQEFLES 127 (133)
T ss_pred HHHHHHHHhc-CChhhhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 4589999965 6788777766666654 445555666666666666654
No 186
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=21.45 E-value=1.1e+02 Score=24.78 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=12.8
Q ss_pred CCCccCHHHHHHHHHH
Q 008155 483 GDGRISIEELMEVMEE 498 (576)
Q Consensus 483 ~dG~Is~~EL~~~L~~ 498 (576)
..|++..+||..+++.
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 5688888888888765
No 187
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]
Probab=21.09 E-value=77 Score=29.11 Aligned_cols=104 Identities=18% Similarity=0.089 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCCCCCCCCC-------ChhHHHHHHHHHHHHcCCCHHHHHhhhh
Q 008155 63 KLVGAFNELTERMNVLSSSSSRLLFKALKLSIPMLQSLPLSPDSR-------SPLTKALSVALLLADLQMDAEVISAGLL 135 (576)
Q Consensus 63 e~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~~h~gq~rk~~g~-------pyi~H~l~Va~iL~~~~~d~~~i~AalL 135 (576)
+|+..++++.+.-+|-+.+ +.+++|++--..-+...... .|. -|..+-..+...++++..+-..++.+.+
T Consensus 14 ~Ll~elD~~i~~rg~~sRS--E~IrdAir~yl~e~~~~~~~-~~~~~G~i~vvy~h~~~~~~~~l~~iqhey~~~iiss~ 90 (136)
T COG0864 14 ELLEELDELIEERGYSSRS--ELIRDALREYLEEYRWLEDI-EGERAGVITVVYDHEKRDVEEKLADIQHEYTDIIISSL 90 (136)
T ss_pred HHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHHHhhhhccc-cceeEEEEEEEEccccchHHHHHHHHhhhccceEEEEe
Confidence 5777888888765554444 46888888776666654332 222 3567777889999998888888999999
Q ss_pred hhccccCCCCHHHHhhhcCHHHHHHHHHhhhhhh
Q 008155 136 RQVVESGGVSIQQVRDRIGIGTAHLLHESLRVKN 169 (576)
Q Consensus 136 HDvvEDt~~t~~~i~~~fG~~Va~lV~~ltk~~~ 169 (576)
|.-+++..+=.--+-+.=+.+|..+++.+..+.+
T Consensus 91 h~hl~~~~ClE~~vv~G~~~~i~~l~~~i~~~~g 124 (136)
T COG0864 91 HVHLDGDNCLEVIVVKGDSERIRELADKLRALRG 124 (136)
T ss_pred eEEcCCCceEEEEEEecCchhHHHHHHHHHhhcC
Confidence 9999874432222334557788888887766655
No 188
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=20.79 E-value=5.3e+02 Score=21.96 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhHhC-----chhHHHHHHHhhhhhccc----chHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Q 008155 218 RYQQLMISLEVMKIHAPLAHAVA-----TNYLSFELEDLSFRYLFP----FSYLFVDTWLRSHETGSKPLIDIYKEQLLQ 288 (576)
Q Consensus 218 ~~k~~~~a~Et~~iy~pLA~rlG-----~~~lk~eLEdl~f~~l~P----~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~ 288 (576)
+...+.++.-.=.=|-++|.+|| +.. .+++.+...|=.- ..|.-+..|...... +..+ ..|-+
T Consensus 2 ~~~~q~~~~nvGr~WK~laR~Lg~~cral~d--~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~--~Atv----~~Lv~ 73 (90)
T cd08780 2 PADQQHFAKSVGKKWKPVGRSLQKNCRALRD--PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGK--KATL----QRLVQ 73 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcccccccch--hHHHHHHhhcccccHHHHHHHHHHHHHHhccc--cchH----HHHHH
Confidence 55677788888888999999999 654 5677777666444 345555555543322 2333 34444
Q ss_pred HHHhcc
Q 008155 289 CLKTDA 294 (576)
Q Consensus 289 ~l~~~~ 294 (576)
+|..++
T Consensus 74 AL~~c~ 79 (90)
T cd08780 74 ALEENG 79 (90)
T ss_pred HHHHcc
Confidence 555555
No 189
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.68 E-value=4.9e+02 Score=21.56 Aligned_cols=74 Identities=11% Similarity=0.003 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHhHhCchhHHHHHHHhhhhhcccchHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHhcc
Q 008155 215 YLPRYQQLMISLEVMKIHAPLAHAVATNYLSFELEDLSFRYLFPFSYLFVDTWLRSHETGSKPLIDIYKEQLLQCLKTDA 294 (576)
Q Consensus 215 ~~~~~k~~~~a~Et~~iy~pLA~rlG~~~lk~eLEdl~f~~l~P~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 294 (576)
.++.+.-..+|...-.=|-+||.+||+.. .+++.+- .-+|+.+....+.|...+..... ......|.+.|.+.|
T Consensus 4 ~~t~~~l~~ia~~iG~~Wk~Lar~LGls~--~dI~~i~--~~~~~~~eq~~~mL~~W~~r~g~--~AT~~~L~~aL~~~~ 77 (86)
T cd08318 4 PVTGEQITVFANKLGEDWKTLAPHLEMKD--KEIRAIE--SDSEDIKMQAKQLLVAWQDREGS--QATPETLITALNAAG 77 (86)
T ss_pred CCCHHHHHHHHHHHhhhHHHHHHHcCCCH--HHHHHHH--hcCCCHHHHHHHHHHHHHHhcCc--cccHHHHHHHHHHcC
Confidence 34556666678777788999999999975 5565544 34566666666666554432111 123444555555555
No 190
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=20.18 E-value=2.3e+02 Score=29.68 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCC---ChHHHHHHHHhhCCCCCCcccHHHHHHHHH-HHHhhhccCCCHHHH------HHHHhH---Hh
Q 008155 488 SIEELMEVMEELGA---PGEDAREMMQLLDSNSDGSLSSDEFDLFQK-QVEFMRNLEDRDDEY------RTMLDE---KL 554 (576)
Q Consensus 488 s~~EL~~~L~~lg~---~~~~v~~l~~~~D~n~dG~Isf~EF~~~l~-~v~~~~~~~~~~~e~------~~~f~~---~~ 554 (576)
|.+.|++++....- ..-+-.-+|...|.|+||.++-.|.-.+.. .++.+-+....++.+ +-.+++ +-
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 56777877776532 223345689999999999999888876544 333222111111111 112222 22
Q ss_pred hccCCCccccH--HHHH
Q 008155 555 QMAGDSGLIQV--YSTE 569 (576)
Q Consensus 555 ~Dkd~dG~It~--~l~~ 569 (576)
.|.|.|-.||. +++.
T Consensus 305 vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLND 321 (442)
T ss_pred cccchhhhhhHHHHHhh
Confidence 39999999988 5544
Done!