Query 008156
Match_columns 576
No_of_seqs 232 out of 1538
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 20:11:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 4.7E-65 1E-69 519.4 22.2 301 72-573 106-410 (545)
2 cd02663 Peptidase_C19G A subfa 100.0 2.4E-61 5.1E-66 490.8 26.5 287 76-571 1-300 (300)
3 cd02660 Peptidase_C19D A subfa 100.0 4.7E-60 1E-64 488.5 29.3 317 75-571 1-328 (328)
4 cd02668 Peptidase_C19L A subfa 100.0 1.1E-59 2.3E-64 483.8 28.4 289 76-571 1-324 (324)
5 cd02664 Peptidase_C19H A subfa 100.0 1.3E-59 2.8E-64 483.0 26.9 308 76-571 1-327 (327)
6 cd02667 Peptidase_C19K A subfa 100.0 4.2E-59 9.2E-64 469.1 25.4 269 76-571 1-279 (279)
7 cd02658 Peptidase_C19B A subfa 100.0 1.1E-58 2.5E-63 474.3 26.8 290 76-571 1-311 (311)
8 cd02671 Peptidase_C19O A subfa 100.0 1.4E-58 3E-63 472.9 27.0 280 71-571 21-332 (332)
9 cd02657 Peptidase_C19A A subfa 100.0 2.1E-58 4.5E-63 471.3 26.7 289 76-571 1-305 (305)
10 cd02669 Peptidase_C19M A subfa 100.0 7.9E-58 1.7E-62 485.7 28.4 302 71-571 116-440 (440)
11 cd02661 Peptidase_C19E A subfa 100.0 7E-57 1.5E-61 459.9 27.4 300 74-571 1-304 (304)
12 cd02659 peptidase_C19C A subfa 100.0 2.5E-56 5.5E-61 461.8 26.6 308 73-575 1-334 (334)
13 COG5560 UBP12 Ubiquitin C-term 100.0 2.8E-57 6.1E-62 461.9 16.5 329 72-573 263-822 (823)
14 cd02662 Peptidase_C19F A subfa 100.0 1.8E-53 4E-58 418.2 23.5 233 76-571 1-240 (240)
15 KOG1872 Ubiquitin-specific pro 100.0 2.6E-55 5.6E-60 439.1 9.8 407 2-572 35-468 (473)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 3.6E-53 7.8E-58 399.0 21.2 333 71-574 68-415 (415)
17 KOG0944 Ubiquitin-specific pro 100.0 4.3E-53 9.3E-58 435.2 20.3 280 28-395 259-554 (763)
18 KOG1868 Ubiquitin C-terminal h 100.0 4.1E-49 8.9E-54 421.5 15.6 334 70-575 297-648 (653)
19 KOG1866 Ubiquitin carboxyl-ter 100.0 4.3E-50 9.3E-55 415.3 6.8 319 71-575 92-436 (944)
20 cd02674 Peptidase_C19R A subfa 100.0 1.4E-47 3E-52 375.4 20.2 226 76-571 1-230 (230)
21 cd02665 Peptidase_C19I A subfa 100.0 2.4E-47 5.2E-52 365.3 17.8 220 76-571 1-228 (228)
22 COG5077 Ubiquitin carboxyl-ter 100.0 1.8E-48 4E-53 403.5 9.3 309 59-574 178-512 (1089)
23 PF00443 UCH: Ubiquitin carbox 100.0 1.1E-45 2.3E-50 369.1 25.4 259 74-570 1-269 (269)
24 KOG1873 Ubiquitin-specific pro 100.0 3.8E-48 8.1E-53 402.3 7.3 376 69-573 200-877 (877)
25 KOG1867 Ubiquitin-specific pro 100.0 1.2E-46 2.7E-51 396.4 17.8 320 72-573 159-484 (492)
26 cd02666 Peptidase_C19J A subfa 100.0 1.9E-46 4.1E-51 382.6 17.3 313 74-571 1-343 (343)
27 cd02673 Peptidase_C19Q A subfa 100.0 6.5E-45 1.4E-49 355.6 19.9 240 77-571 2-245 (245)
28 COG5207 UBP14 Isopeptidase T [ 100.0 4.3E-43 9.4E-48 349.7 18.6 395 74-573 303-749 (749)
29 cd02257 Peptidase_C19 Peptidas 100.0 3.1E-42 6.7E-47 340.0 22.0 247 76-571 1-255 (255)
30 KOG4598 Putative ubiquitin-spe 100.0 4.2E-44 9.1E-49 367.2 5.7 343 71-575 84-443 (1203)
31 KOG1870 Ubiquitin C-terminal h 100.0 2.1E-40 4.5E-45 373.6 16.4 334 70-574 242-842 (842)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 1.9E-39 4.2E-44 374.4 14.2 302 71-575 167-487 (1093)
33 cd02672 Peptidase_C19P A subfa 100.0 6.3E-39 1.4E-43 317.6 15.4 244 73-571 14-268 (268)
34 cd02670 Peptidase_C19N A subfa 100.0 1.5E-35 3.2E-40 286.4 16.2 233 76-571 1-241 (241)
35 PF13423 UCH_1: Ubiquitin carb 100.0 3E-34 6.6E-39 290.9 22.0 294 75-552 1-295 (295)
36 KOG1871 Ubiquitin-specific pro 100.0 3.2E-34 6.9E-39 280.2 12.1 336 72-574 26-420 (420)
37 KOG1864 Ubiquitin-specific pro 100.0 4.5E-34 9.8E-39 305.6 13.7 327 73-572 231-571 (587)
38 KOG2026 Spindle pole body prot 99.9 1.7E-25 3.8E-30 218.0 12.5 300 71-573 131-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 3.1E-19 6.6E-24 190.4 15.4 336 73-570 498-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.6 6E-07 1.3E-11 84.9 12.0 47 78-130 6-52 (275)
41 KOG1864 Ubiquitin-specific pro 97.6 0.00013 2.7E-09 79.7 7.7 105 77-181 34-154 (587)
42 cd01813 UBP_N UBP ubiquitin pr 97.3 4.7E-05 1E-09 59.9 -0.2 38 2-39 31-74 (74)
43 KOG1887 Ubiquitin carboxyl-ter 95.3 0.0056 1.2E-07 67.4 0.7 58 497-572 723-789 (806)
44 PF05408 Peptidase_C28: Foot-a 93.1 0.048 1E-06 49.5 1.5 23 74-96 33-55 (193)
45 cd01812 BAG1_N Ubiquitin-like 91.5 0.057 1.2E-06 41.8 0.1 31 2-34 31-61 (71)
46 cd01800 SF3a120_C Ubiquitin-li 90.3 0.064 1.4E-06 42.3 -0.6 31 2-34 29-59 (76)
47 PF05408 Peptidase_C28: Foot-a 88.9 0.5 1.1E-05 43.1 3.8 33 509-557 130-164 (193)
48 PF08715 Viral_protease: Papai 85.9 0.98 2.1E-05 45.8 4.4 77 73-176 101-178 (320)
49 cd01791 Ubl5 UBL5 ubiquitin-li 84.7 0.29 6.2E-06 38.3 -0.0 29 4-34 35-63 (73)
50 cd01809 Scythe_N Ubiquitin-lik 84.4 0.22 4.8E-06 38.4 -0.8 30 3-34 33-62 (72)
51 cd01805 RAD23_N Ubiquitin-like 83.7 0.26 5.7E-06 38.7 -0.7 30 3-34 33-64 (77)
52 smart00213 UBQ Ubiquitin homol 83.5 0.26 5.7E-06 36.8 -0.7 31 2-34 31-61 (64)
53 cd01792 ISG15_repeat1 ISG15 ub 78.3 0.78 1.7E-05 36.5 0.4 29 4-34 36-66 (80)
54 cd01797 NIRF_N amino-terminal 77.7 0.57 1.2E-05 37.1 -0.6 30 3-34 35-64 (78)
55 cd01793 Fubi Fubi ubiquitin-li 76.3 0.67 1.4E-05 36.2 -0.5 30 3-34 31-60 (74)
56 cd01794 DC_UbP_C dendritic cel 75.8 0.73 1.6E-05 35.6 -0.4 30 3-34 31-60 (70)
57 cd01810 ISG15_repeat2 ISG15 ub 74.3 0.78 1.7E-05 35.8 -0.6 30 3-34 31-60 (74)
58 PF00240 ubiquitin: Ubiquitin 73.7 0.62 1.3E-05 35.6 -1.3 30 3-34 28-57 (69)
59 cd01803 Ubiquitin Ubiquitin. U 72.3 0.91 2E-05 35.4 -0.7 30 3-34 33-62 (76)
60 cd01807 GDX_N ubiquitin-like d 71.8 0.98 2.1E-05 35.2 -0.6 30 3-34 33-62 (74)
61 KOG1868 Ubiquitin C-terminal h 70.2 0.095 2.1E-06 58.0 -9.0 52 339-390 360-411 (653)
62 cd01804 midnolin_N Ubiquitin-l 69.6 1.4 3.1E-05 34.8 -0.1 28 4-34 35-62 (78)
63 KOG1867 Ubiquitin-specific pro 68.3 1.2 2.6E-05 48.2 -1.0 103 73-176 76-181 (492)
64 cd01815 BMSC_UbP_N Ubiquitin-l 68.1 1.8 4E-05 33.8 0.2 29 4-34 36-65 (75)
65 cd01806 Nedd8 Nebb8-like ubiq 65.7 1.5 3.3E-05 34.0 -0.7 30 3-34 33-62 (76)
66 PF14353 CpXC: CpXC protein 64.9 3.7 8E-05 35.8 1.5 47 231-293 1-47 (128)
67 cd01796 DDI1_N DNA damage indu 64.7 1.8 3.9E-05 33.5 -0.4 30 3-34 32-62 (71)
68 cd01808 hPLIC_N Ubiquitin-like 64.3 1.8 3.9E-05 33.4 -0.5 29 4-34 33-61 (71)
69 cd01769 UBL Ubiquitin-like dom 64.2 2.1 4.4E-05 32.4 -0.2 30 3-34 30-59 (69)
70 cd01798 parkin_N amino-termina 63.3 1.9 4.2E-05 33.1 -0.5 30 3-34 31-60 (70)
71 KOG3556 Familial cylindromatos 60.5 11 0.00023 40.2 4.1 26 72-97 366-391 (724)
72 PTZ00044 ubiquitin; Provisiona 59.9 2.2 4.8E-05 33.3 -0.7 30 3-34 33-62 (76)
73 KOG1871 Ubiquitin-specific pro 58.4 3.7 8.1E-05 42.1 0.4 37 72-108 176-212 (420)
74 cd01802 AN1_N ubiquitin-like d 56.3 2.9 6.3E-05 35.0 -0.6 30 3-34 60-89 (103)
75 cd01795 USP48_C USP ubiquitin- 52.6 3 6.5E-05 34.2 -1.0 31 2-34 36-67 (107)
76 PRK03824 hypA hydrogenase nick 42.5 1E+02 0.0022 27.1 6.9 14 227-240 66-79 (135)
77 TIGR00310 ZPR1_znf ZPR1 zinc f 41.4 35 0.00077 32.1 4.0 18 276-293 22-39 (192)
78 PF10264 Stork_head: Winged he 40.3 87 0.0019 24.9 5.3 54 116-172 9-62 (80)
79 cd00524 SORL Superoxide reduct 39.3 1.3E+02 0.0028 24.0 6.6 46 504-572 17-66 (86)
80 TIGR00601 rad23 UV excision re 39.1 8.8 0.00019 40.1 -0.4 27 6-34 39-65 (378)
81 cd01790 Herp_N Homocysteine-re 35.8 9.8 0.00021 30.2 -0.5 25 6-32 41-65 (79)
82 KOG0005 Ubiquitin-like protein 34.2 24 0.00053 25.9 1.3 29 4-34 34-62 (70)
83 PF01473 CW_binding_1: Putativ 34.2 29 0.00063 19.1 1.4 11 540-550 6-16 (19)
84 cd01814 NTGP5 Ubiquitin-like N 33.3 14 0.00029 31.3 -0.1 29 4-34 44-74 (113)
85 cd01799 Hoil1_N Ubiquitin-like 32.2 15 0.00032 28.7 -0.0 29 3-34 35-64 (75)
86 PF08770 SoxZ: Sulphur oxidati 31.6 1.6E+02 0.0035 24.4 6.0 55 499-574 13-77 (100)
87 PF00301 Rubredoxin: Rubredoxi 31.3 41 0.0009 23.7 2.1 10 284-293 34-43 (47)
88 TIGR00340 zpr1_rel ZPR1-relate 30.5 72 0.0016 29.1 4.1 18 276-293 20-37 (163)
89 smart00709 Zpr1 Duplicated dom 28.5 78 0.0017 28.8 4.0 18 276-293 21-38 (160)
90 TIGR00373 conserved hypothetic 28.5 1.6E+02 0.0035 26.7 6.0 18 268-293 120-137 (158)
91 cd05027 S-100B S-100B: S-100B 25.6 1.8E+02 0.0039 23.4 5.2 49 120-169 7-58 (88)
92 PRK06266 transcription initiat 25.4 70 0.0015 29.7 3.2 43 268-318 128-171 (178)
93 PF11164 DUF2948: Protein of u 25.3 4.8E+02 0.01 23.1 8.8 25 497-521 81-105 (138)
94 cd01801 Tsc13_N Ubiquitin-like 24.6 19 0.0004 28.2 -0.7 30 5-34 38-67 (77)
95 PF02099 Josephin: Josephin; 24.3 90 0.002 28.3 3.6 34 502-555 98-131 (157)
96 COG1779 C4-type Zn-finger prot 23.7 88 0.0019 29.3 3.4 43 227-293 10-52 (201)
97 PHA02998 RNA polymerase subuni 23.1 89 0.0019 28.7 3.2 29 221-253 132-161 (195)
98 KOG2463 Predicted RNA-binding 22.2 99 0.0022 31.3 3.6 18 352-369 279-297 (376)
99 KOG2906 RNA polymerase III sub 20.5 1.2E+02 0.0025 25.0 3.0 57 226-293 16-74 (105)
100 PF13717 zinc_ribbon_4: zinc-r 20.1 64 0.0014 21.2 1.3 10 231-240 2-11 (36)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-65 Score=519.37 Aligned_cols=301 Identities=28% Similarity=0.471 Sum_probs=263.3
Q ss_pred CCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHH
Q 008156 72 CLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMEL 151 (576)
Q Consensus 72 ~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~ 151 (576)
..++||.|+|||||+|||||||.++|+|..||+...+.........|++++|+..+... ..+.+.+|+|..|+..|+.
T Consensus 106 ~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A--~~~~g~pisP~~i~s~L~~ 183 (545)
T KOG1865|consen 106 AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRA--LHNPGHPISPSQILSNLRN 183 (545)
T ss_pred cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHH--hcCCCCccChHHHHHhhhh
Confidence 37999999999999999999999999999999998877666668899999999988776 3455569999999999999
Q ss_pred HhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeece
Q 008156 152 YIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSI 231 (576)
Q Consensus 152 ~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~ 231 (576)
+..+|..+.|+||||||++++|.|+..+..-.........+ ...+..+|+|.++++
T Consensus 184 I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~------------------------ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 184 ISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQD------------------------TTLVHQIFGGYLRSQ 239 (545)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCccccc------------------------ceehhhhhccchhhc
Confidence 99999999999999999999999999875221111111111 223778999999999
Q ss_pred EEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHH
Q 008156 232 LTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEME 308 (576)
Q Consensus 232 i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~ 308 (576)
|+|..|.+ .+.++|+.++|+|.+. ...+|+++|++|+++|.++| |.|++|+.+
T Consensus 240 vkC~~C~~-vS~tyE~~~dltvei~--------d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~--------------- 295 (545)
T KOG1865|consen 240 IKCLHCKG-VSDTYEPYLDLTLEIQ--------DASSLQQALEQFTKPEKLDGENAYHCGRCKQK--------------- 295 (545)
T ss_pred eecccCCC-cccccccccceEEEec--------cchhHHHHHHHhhhHHhhCCccccccchhhhh---------------
Confidence 99999997 7999999999999544 33499999999999999965 999999998
Q ss_pred HHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCc
Q 008156 309 IEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFV 388 (576)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~ 388 (576)
+.|.|+..|.++|+||+||||||.+ ++..||.++|.||+.|||.||+
T Consensus 296 ------------------------------v~A~K~lti~raPnVLTi~LKRF~~---~~~gKI~K~I~fPE~LDl~PyM 342 (545)
T KOG1865|consen 296 ------------------------------VPASKQLTIHRAPNVLTLHLKRFSN---GTGGKISKPVSFPETLDLQPYM 342 (545)
T ss_pred ------------------------------CcccceeeeecCCceEEEeeehhcc---CcccccccccCCcccccccccc
Confidence 9999999999999999999999997 3446999999999999999999
Q ss_pred cCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCC
Q 008156 389 KSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPT 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (576)
+.+
T Consensus 343 S~~----------------------------------------------------------------------------- 345 (545)
T KOG1865|consen 343 SQP----------------------------------------------------------------------------- 345 (545)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 642
Q ss_pred CCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEE
Q 008156 469 QSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCI 547 (576)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~ 547 (576)
...+..|.|+|||+|.|. ..+|||+||||. .++.||+|
T Consensus 346 --------------------------~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks---------------~~g~Wy~~ 384 (545)
T KOG1865|consen 346 --------------------------NEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS---------------QNGQWYKM 384 (545)
T ss_pred --------------------------CCCCceEEEEEEEEeccccccCCceEEEEEc---------------CCCceEEc
Confidence 124458999999999999 999999999996 58899999
Q ss_pred eCCceeeechhhhccCceEEEEEEec
Q 008156 548 SDSQVYSVSVNDVLAAEASLLFYERI 573 (576)
Q Consensus 548 nD~~V~~v~~~~v~~~~aYlLfY~rv 573 (576)
||+.|+.++.+.|+++.||||||.|-
T Consensus 385 DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 385 DDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred cCceeeeccccceecccceEEEEEee
Confidence 99999999999999999999999984
No 2
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-61 Score=490.78 Aligned_cols=287 Identities=28% Similarity=0.466 Sum_probs=240.9
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhhc
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQN 155 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~~ 155 (576)
||.|+||||||||+||+|++ .+++.+|+.||..|+........++|..|+++|+...+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 99999999999999999987 468899999999998765556789999999999999999
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEec
Q 008156 156 FNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQ 235 (576)
Q Consensus 156 f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~ 235 (576)
|..++||||||||.+|||.|++++........... +. ........-.+.|..+|+|.+.++++|.
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~-~~--------------~~~~~~~~~~~~i~~~F~G~~~~~~~C~ 124 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR-KL--------------NNNNNAEPQPTWVHEIFQGILTNETRCL 124 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccc-cc--------------cccccCCcCCCChhhhCceEEEeeEEeC
Confidence 99999999999999999999999976432211100 00 0000001112347789999999999999
Q ss_pred CCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHHHHHH
Q 008156 236 SCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEMEIEEL 312 (576)
Q Consensus 236 ~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~~~~~ 312 (576)
.|++ .+.+.|+|++|+|+++. ..+|++||+.|+++|.+++ |.|++|+..
T Consensus 125 ~C~~-~s~~~e~f~~Lsl~i~~--------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~------------------- 176 (300)
T cd02663 125 TCET-VSSRDETFLDLSIDVEQ--------NTSITSCLRQFSATETLCGRNKFYCDECCSL------------------- 176 (300)
T ss_pred CCCC-CccccceeEEeccCCCC--------cCCHHHHHHHhhcccccCCCCcEECCCCCCc-------------------
Confidence 9996 68999999999995433 4599999999999999975 899999987
Q ss_pred HHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-CceeeeccceeeccccccCcCccCC
Q 008156 313 RRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDLFPFVKSG 391 (576)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl~~~~~~~ 391 (576)
+.+.|+..|.++|+||+|||+||.|+.. ++..|+..+|.||+.|+|..+....
T Consensus 177 --------------------------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~ 230 (300)
T cd02663 177 --------------------------QEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDA 230 (300)
T ss_pred --------------------------eeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEecccccccc
Confidence 8899999999999999999999999975 4678999999999999998764211
Q ss_pred CCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCC
Q 008156 392 VGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSG 471 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (576)
T Consensus 231 -------------------------------------------------------------------------------- 230 (300)
T cd02663 231 -------------------------------------------------------------------------------- 230 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCC
Q 008156 472 SNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDS 550 (576)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~ 550 (576)
......|+|+|||+|.|+ +++|||+||+|. +++||+|||+
T Consensus 231 -----------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~----------------~~~W~~fdD~ 271 (300)
T cd02663 231 -----------------------ENPDRLYELVAVVVHIGGGPNHGHYVSIVKS----------------HGGWLLFDDE 271 (300)
T ss_pred -----------------------CCCCeEEEEEEEEEEecCCCCCCceEEEEEC----------------CCcEEEEcCC
Confidence 112347999999999998 999999999993 7899999999
Q ss_pred ceeeechhhhc--------cCceEEEEEE
Q 008156 551 QVYSVSVNDVL--------AAEASLLFYE 571 (576)
Q Consensus 551 ~V~~v~~~~v~--------~~~aYlLfY~ 571 (576)
.|++++.++|. ...||||||+
T Consensus 272 ~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 272 TVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred ceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 99999999997 4569999996
No 3
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-60 Score=488.47 Aligned_cols=317 Identities=31% Similarity=0.462 Sum_probs=260.8
Q ss_pred CCcccCCCchhhHHHHHHHhccchhHHHHHhhhccC--CCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHH
Q 008156 75 PGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC--EEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELY 152 (576)
Q Consensus 75 ~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~--~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~ 152 (576)
+||.|+||||||||+||+|+++|+|+++|+...... .......++.++|+.||..|+. ......+.|..|+.++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~~~~l~~~~~~ 79 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYY-SGDRSPYGPINLLYLSWKH 79 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhc-CCCCCCcCHHHHHHHHHhh
Confidence 599999999999999999999999999998864432 1233567899999999999963 3345688999999999988
Q ss_pred hhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceE
Q 008156 153 IQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSIL 232 (576)
Q Consensus 153 ~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i 232 (576)
.+.|.++.||||||||.+||+.|++++......... .....+.|.++|+|.+.+++
T Consensus 80 ~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------------~~~~~~~i~~~F~g~~~~~~ 135 (328)
T cd02660 80 SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAND------------------------ESHCNCIIHQTFSGSLQSSV 135 (328)
T ss_pred chhhcccccccHHHHHHHHHHHHHHHhhcccccccc------------------------cccCCceeEEecccEEEeee
Confidence 889999999999999999999999998754321000 00112347889999999999
Q ss_pred EecCCCCcccccccccceeecccCCCCCC-------CCCCCCCHHHHHhhhcCeeeccc--cccCCcchhhhhhhhcccc
Q 008156 233 TCQSCLSQISLDYQFFHSLPLSPVLDSGS-------TIPFGCTLEDCLKQFLTAEQLEN--YHCSHCWHIAAIKYLSITE 303 (576)
Q Consensus 233 ~C~~C~~~~s~~~e~f~~LsL~~~~~~~~-------~~~~~~sL~~~L~~~~~~E~i~~--~~C~~C~~~~~~~~l~~~~ 303 (576)
+|..|++ .+.+.|+|+.|+|+++..... ......+|++||+.|+.+|.+++ |.|++|+..
T Consensus 136 ~C~~C~~-~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~---------- 204 (328)
T cd02660 136 TCQRCGG-VSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGST---------- 204 (328)
T ss_pred EcCCCCC-ccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCc----------
Confidence 9999996 688899999999976544221 12345799999999999999976 589999987
Q ss_pred ccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccc
Q 008156 304 ANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILD 383 (576)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ld 383 (576)
+.+.|+..|.++|+||+|||+||.|+..+...|+..+|.||..||
T Consensus 205 -----------------------------------~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ld 249 (328)
T cd02660 205 -----------------------------------QEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELN 249 (328)
T ss_pred -----------------------------------cceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEec
Confidence 889999999999999999999999987776789999999999999
Q ss_pred cCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCC
Q 008156 384 LFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGES 463 (576)
Q Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (576)
|.+|+..+.....
T Consensus 250 l~~~~~~~~~~~~------------------------------------------------------------------- 262 (328)
T cd02660 250 MTPYTSSSIGDTQ------------------------------------------------------------------- 262 (328)
T ss_pred hhhhccccccccc-------------------------------------------------------------------
Confidence 9999965310000
Q ss_pred CCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCc
Q 008156 464 ILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTH 543 (576)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~ 543 (576)
..........|+|+|||+|+|+.++|||+||+|. .+++
T Consensus 263 ---------------------------~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~---------------~~~~ 300 (328)
T cd02660 263 ---------------------------DSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQ---------------GDGQ 300 (328)
T ss_pred ---------------------------ccccCCCCceEEEEEEEEeeccCCCCcEEEEEEC---------------CCCc
Confidence 0001224458999999999999889999999995 2489
Q ss_pred eEEEeCCceeeechhhhccCceEEEEEE
Q 008156 544 WFCISDSQVYSVSVNDVLAAEASLLFYE 571 (576)
Q Consensus 544 W~~~nD~~V~~v~~~~v~~~~aYlLfY~ 571 (576)
||+|||+.|+++++++|+...||||||.
T Consensus 301 W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 301 WFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred EEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 9999999999999999999999999994
No 4
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-59 Score=483.82 Aligned_cols=289 Identities=26% Similarity=0.415 Sum_probs=243.8
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCC---------CCCCChHHHHHHHHHHHHHhcCCCCceeChHHHH
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEE---------PDEDLPLTVALASLLEELCLVGETRLVLSPQKVM 146 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~---------~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~ 146 (576)
||.|+||||||||+||+|+++|+|+++++........ .....+++.+|+.||..|+. +....++|..|+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~--~~~~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQF--GNRSVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHh--CCCceEChHHHH
Confidence 8999999999999999999999999999876543210 01236899999999999975 345789999999
Q ss_pred HHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccc
Q 008156 147 LAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDG 226 (576)
Q Consensus 147 ~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g 226 (576)
.+++ |..++||||+|||.+||+.|++++.....+. ..+.|.++|.|
T Consensus 79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~-----------------------------~~~~i~~~F~G 124 (324)
T cd02668 79 KALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPD-----------------------------LKNIVQDLFRG 124 (324)
T ss_pred HHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccCCc-----------------------------ccchhhhhcce
Confidence 9884 6678999999999999999999986431110 12237789999
Q ss_pred eeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhcccc
Q 008156 227 ILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITE 303 (576)
Q Consensus 227 ~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~ 303 (576)
.+.++++|..|++ .+.+.|+|+.|+|+++ ...+|+++|+.|+.+|.++| |.|++|+..
T Consensus 125 ~~~~~~~C~~C~~-~s~~~e~f~~l~l~i~--------~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~---------- 185 (324)
T cd02668 125 EYSYVTQCSKCGR-ESSLPSKFYELELQLK--------GHKTLEECIDEFLKEEQLTGDNQYFCESCNSK---------- 185 (324)
T ss_pred EEEEEEEeCCCCC-ccccccccEEEEEEec--------ccCCHHHHHHHhhCceecCCCccccCCCCCce----------
Confidence 9999999999996 6888999999999543 23599999999999999976 899999987
Q ss_pred ccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-Cceeeeccceeecccc
Q 008156 304 ANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLIL 382 (576)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~L 382 (576)
+.+.|+..|.++|+||+|||+||.|+.. +...|+..+|.||+.|
T Consensus 186 -----------------------------------~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~L 230 (324)
T cd02668 186 -----------------------------------TDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEIL 230 (324)
T ss_pred -----------------------------------eeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeE
Confidence 8899999999999999999999999874 6679999999999999
Q ss_pred ccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCC
Q 008156 383 DLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGE 462 (576)
Q Consensus 383 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (576)
||.+|+...
T Consensus 231 dl~~~~~~~----------------------------------------------------------------------- 239 (324)
T cd02668 231 DMGEYLAES----------------------------------------------------------------------- 239 (324)
T ss_pred echhhcccc-----------------------------------------------------------------------
Confidence 999998331
Q ss_pred CCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCC
Q 008156 463 SILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPL 541 (576)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~ 541 (576)
......|+|+|||+|.|. +++|||+||+|.. .+
T Consensus 240 --------------------------------~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~--------------~~ 273 (324)
T cd02668 240 --------------------------------DEGSYVYELSGVLIHQGVSAYSGHYIAHIKDE--------------QT 273 (324)
T ss_pred --------------------------------cCCCcEEEEEEEEEEcCCCCCCEeeEEEEECC--------------CC
Confidence 112347999999999998 8999999999953 46
Q ss_pred CceEEEeCCceeeechhhhcc---------------------CceEEEEEE
Q 008156 542 THWFCISDSQVYSVSVNDVLA---------------------AEASLLFYE 571 (576)
Q Consensus 542 ~~W~~~nD~~V~~v~~~~v~~---------------------~~aYlLfY~ 571 (576)
++||+|||+.|++++++.|.. ..||||||+
T Consensus 274 ~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 274 GEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 899999999999998887732 249999996
No 5
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-59 Score=483.04 Aligned_cols=308 Identities=28% Similarity=0.386 Sum_probs=242.9
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHH-HHHHHHHHhh
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQK-VMLAMELYIQ 154 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~-~~~~l~~~~~ 154 (576)
||.|+||||||||+||+|+++|+||+++++...... .....+..+|+.||..|.. ....++.|.. |+.++. .+
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~--~~~~~~~~~L~~lf~~l~~--~~~~~~~~~~~~l~~~~--~~ 74 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL--GDSQSVMKKLQLLQAHLMH--TQRRAEAPPDYFLEASR--PP 74 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc--CCcchHHHHHHHHHHHHhh--cCCcccCCHHHHHHHhc--cc
Confidence 899999999999999999999999999998764321 2345788899999998853 3345667766 776654 47
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEe
Q 008156 155 NFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTC 234 (576)
Q Consensus 155 ~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C 234 (576)
.|..+.||||||||.+||+.|+.. |.++|+|.+.++++|
T Consensus 75 ~f~~~~QqDa~EFl~~lLd~l~~~-----------------------------------------i~~~F~G~~~~~i~C 113 (327)
T cd02664 75 WFTPGSQQDCSEYLRYLLDRLHTL-----------------------------------------IEKMFGGKLSTTIRC 113 (327)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHH-----------------------------------------HHhhCcEEeEeEEEc
Confidence 899999999999999999999821 567999999999999
Q ss_pred cCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHHHHH
Q 008156 235 QSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEMEIEE 311 (576)
Q Consensus 235 ~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~~~~ 311 (576)
..|++ .+.+.|+|..|+|+++ +|+++|+.|+.+|.++| |.|++|+..
T Consensus 114 ~~C~~-~s~~~e~f~~l~L~i~-----------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~------------------ 163 (327)
T cd02664 114 LNCNS-TSARTERFRDLDLSFP-----------SVQDLLNYFLSPEKLTGDNQYYCEKCASL------------------ 163 (327)
T ss_pred CCCCC-EecccccceeeecCCC-----------CHHHHHHHhcCeeEccCCCceeCCccCCc------------------
Confidence 99996 6899999999999532 89999999999999986 999999987
Q ss_pred HHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-CceeeeccceeeccccccCcCccC
Q 008156 312 LRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDLFPFVKS 390 (576)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl~~~~~~ 390 (576)
+.+.|+..|.++|+||+|||+||.|+.. +...||.++|.||+.|||..++..
T Consensus 164 ---------------------------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~ 216 (327)
T cd02664 164 ---------------------------QDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVES 216 (327)
T ss_pred ---------------------------cceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccccc
Confidence 8899999999999999999999999985 567899999999999999988743
Q ss_pred CCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCC
Q 008156 391 GVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQS 470 (576)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (576)
......... . . ++.+ .
T Consensus 217 ~~~~~~~~~-------------------------------------~----~-----~~~~----------~-------- 232 (327)
T cd02664 217 KSSESPLEK-------------------------------------K----E-----EESG----------D-------- 232 (327)
T ss_pred ccccccccc-------------------------------------c----c-----cccc----------c--------
Confidence 210000000 0 0 0000 0
Q ss_pred CCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCC------CCCCCCCCCCCCCc
Q 008156 471 GSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESH------EENPNEHFETPLTH 543 (576)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~------~~~~~~~~~~~~~~ 543 (576)
..........|+|+|||+|.|. +++|||+||+|.....+ ++..+.......+.
T Consensus 233 --------------------~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (327)
T cd02664 233 --------------------DGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKN 292 (327)
T ss_pred --------------------cccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCC
Confidence 0001124568999999999998 89999999999752111 11112223345689
Q ss_pred eEEEeCCceeeechhhhcc-------CceEEEEEE
Q 008156 544 WFCISDSQVYSVSVNDVLA-------AEASLLFYE 571 (576)
Q Consensus 544 W~~~nD~~V~~v~~~~v~~-------~~aYlLfY~ 571 (576)
||+|||+.|++++.++|++ ..||||||+
T Consensus 293 W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 293 WYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred EEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 9999999999999999986 679999996
No 6
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.2e-59 Score=469.06 Aligned_cols=269 Identities=37% Similarity=0.608 Sum_probs=227.8
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhhc
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQN 155 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~~ 155 (576)
||.|+|||||||||||+|+++|+|+++++. +|..|+..+....+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-----------------------------------~P~~~~~~l~~~~~~ 45 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-----------------------------------TPKELFSQVCRKAPQ 45 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-----------------------------------CHHHHHHHHHHhhHh
Confidence 999999999999999999999999999876 778888888888899
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEec
Q 008156 156 FNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQ 235 (576)
Q Consensus 156 f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~ 235 (576)
|..+.||||+|||.+||+.|+.. |.++|.|.+.++++|.
T Consensus 46 f~~~~QqDA~Efl~~lld~l~~~-----------------------------------------i~~~F~G~~~~~i~C~ 84 (279)
T cd02667 46 FKGYQQQDSHELLRYLLDGLRTF-----------------------------------------IDSIFGGELTSTIMCE 84 (279)
T ss_pred hcCCchhhHHHHHHHHHHHHHHh-----------------------------------------hhhhcceEEEEEEEcC
Confidence 99999999999999999999821 5678999999999999
Q ss_pred CCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHHHHHH
Q 008156 236 SCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEMEIEEL 312 (576)
Q Consensus 236 ~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~~~~~ 312 (576)
.|++ .+.+.|+|+.|+|+... ......+|++||+.|+.+|.+++ |.|++|+.
T Consensus 85 ~C~~-~s~~~E~f~~L~Lp~~~----~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~-------------------- 139 (279)
T cd02667 85 SCGT-VSLVYEPFLDLSLPRSD----EIKSECSIESCLKQFTEVEILEGNNKFACENCTK-------------------- 139 (279)
T ss_pred CCCC-EeCccccceEEecCCCc----ccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc--------------------
Confidence 9996 68999999999995332 22345799999999999999986 89999983
Q ss_pred HHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCC
Q 008156 313 RRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGV 392 (576)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~ 392 (576)
+.|+..|.++|+||+|||+||.|+..+...|++.+|.||..|||.+|+....
T Consensus 140 ----------------------------a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~ 191 (279)
T cd02667 140 ----------------------------AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPKC 191 (279)
T ss_pred ----------------------------eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCccc
Confidence 7889999999999999999999998767799999999999999999995521
Q ss_pred CCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCC
Q 008156 393 GINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGS 472 (576)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (576)
..
T Consensus 192 ~~------------------------------------------------------------------------------ 193 (279)
T cd02667 192 NS------------------------------------------------------------------------------ 193 (279)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccC-------CCCCCCCCCCCCCCceE
Q 008156 473 NVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVES-------HEENPNEHFETPLTHWF 545 (576)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~-------~~~~~~~~~~~~~~~W~ 545 (576)
........|+|+|||+|.|+.++|||+||+|..... .+..+.......+++||
T Consensus 194 --------------------~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 253 (279)
T cd02667 194 --------------------SEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWY 253 (279)
T ss_pred --------------------cccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEE
Confidence 001234579999999999999999999999974211 01111222334578999
Q ss_pred EEeCCceeeechhhhccCceEEEEEE
Q 008156 546 CISDSQVYSVSVNDVLAAEASLLFYE 571 (576)
Q Consensus 546 ~~nD~~V~~v~~~~v~~~~aYlLfY~ 571 (576)
+|||+.|++|+.++|+...|||||||
T Consensus 254 ~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 254 YISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred EEECCccEECCHHHhccCCcEEEEeC
Confidence 99999999999999999999999996
No 7
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-58 Score=474.34 Aligned_cols=290 Identities=26% Similarity=0.339 Sum_probs=244.9
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccC--CCCCCCChHHHHHHHHHHHHHhcCC------------CCceeC
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC--EEPDEDLPLTVALASLLEELCLVGE------------TRLVLS 141 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~--~~~~~~~~l~~~L~~L~~~l~~~~~------------~~~~i~ 141 (576)
||.|+||||||||+||||+++|+||++|+...... ....+..+++++|++|+..|+.... ....++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 99999999999999999999999999998743221 2223566899999999999975321 245799
Q ss_pred hHHHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhccc
Q 008156 142 PQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFF 221 (576)
Q Consensus 142 p~~~~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (576)
|..|+.+++..++.|..+.||||||||.+||+.|++++.... ...+.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~---------------------------------~~~~~ 127 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNL---------------------------------GLNPN 127 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhcccc---------------------------------cCCch
Confidence 999999999999999999999999999999999999885311 01156
Q ss_pred ccccceeeceEEecCCCCcccccccccceeecccCCCCC------CCCCCCCCHHHHHhhhcCeeeccccccCCcchhhh
Q 008156 222 GPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSG------STIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAA 295 (576)
Q Consensus 222 ~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~------~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~ 295 (576)
.+|+|.+.++++|..|++ .+.+.|+|.+|+|+++.... ..+....+|+++|+.|+..|.++ +.|++|+..
T Consensus 128 ~~f~~~~~~~i~C~~C~~-~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~-~~C~~C~~~-- 203 (311)
T cd02658 128 DLFKFMIEDRLECLSCKK-VKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE-DFCSTCKEK-- 203 (311)
T ss_pred hheEEEeeEEEEcCCCCC-EEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc-ccccCCCCc--
Confidence 789999999999999995 68889999999996554321 12234679999999999999998 679999987
Q ss_pred hhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccc
Q 008156 296 IKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGH 375 (576)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~ 375 (576)
+.+.|+..|.+||+||+|||+||.|+..+...|+...
T Consensus 204 -------------------------------------------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~ 240 (311)
T cd02658 204 -------------------------------------------TTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVP 240 (311)
T ss_pred -------------------------------------------ccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccc
Confidence 8899999999999999999999999877778999999
Q ss_pred eeeccccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccc
Q 008156 376 IAFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAH 455 (576)
Q Consensus 376 V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (576)
|.||..| .
T Consensus 241 v~~p~~l-------~----------------------------------------------------------------- 248 (311)
T cd02658 241 IDVPEEL-------G----------------------------------------------------------------- 248 (311)
T ss_pred cccCCcC-------C-----------------------------------------------------------------
Confidence 9999776 1
Q ss_pred cccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCC
Q 008156 456 EKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPN 534 (576)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~ 534 (576)
...|+|+|||+|.|. +++|||+||+|..
T Consensus 249 ------------------------------------------~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~--------- 277 (311)
T cd02658 249 ------------------------------------------PGKYELIAFISHKGTSVHSGHYVAHIKKE--------- 277 (311)
T ss_pred ------------------------------------------CCcEEEEEEEEccCCCCCCcceEEEEeCC---------
Confidence 015999999999998 9999999999963
Q ss_pred CCCCCCCCceEEEeCCceeeechhhhccCceEEEEEE
Q 008156 535 EHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYE 571 (576)
Q Consensus 535 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~ 571 (576)
....++||+|||+.|++++..+|.+..||||||+
T Consensus 278 ---~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 278 ---IDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred ---CCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 0134899999999999999999999999999996
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-58 Score=472.88 Aligned_cols=280 Identities=28% Similarity=0.434 Sum_probs=231.6
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHH---HHHHhcCCCCceeChHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLL---EELCLVGETRLVLSPQKVML 147 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~---~~l~~~~~~~~~i~p~~~~~ 147 (576)
..+++||.|+||||||||+||+|+++|.|++.+.+..... .....++.++ ..++. .....+.|..|++
T Consensus 21 ~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~--~~~~~~~P~~~~~ 91 (332)
T cd02671 21 LLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYN--DELANQAPRRLLN 91 (332)
T ss_pred CCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHh--hcccccCHHHHHH
Confidence 4479999999999999999999999999999998765221 1122334333 33332 2223567999999
Q ss_pred HHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccce
Q 008156 148 AMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGI 227 (576)
Q Consensus 148 ~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~ 227 (576)
+++..++.|..+.||||||||.+||+.|+.. |.++|+|.
T Consensus 92 ~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~~-----------------------------------------i~~~F~g~ 130 (332)
T cd02671 92 ALREVNPMYEGYLQHDAQEVLQCILGNIQEL-----------------------------------------VEKDFQGQ 130 (332)
T ss_pred HHHHhccccCCccccCHHHHHHHHHHHHHHH-----------------------------------------HHhhhceE
Confidence 9999999999999999999999999999842 55689999
Q ss_pred eeceEEecCCCCcccccccccceeecccCCCCC-----------CCCCCCCCHHHHHhhhcCeeeccc---cccCCcchh
Q 008156 228 LGSILTCQSCLSQISLDYQFFHSLPLSPVLDSG-----------STIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHI 293 (576)
Q Consensus 228 ~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~-----------~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~ 293 (576)
+.++++|..|++ .+.+.|+|++|+|++..... .+.....+|++||+.|+++|.++| |.|++|+..
T Consensus 131 ~~~~~~C~~C~~-~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~ 209 (332)
T cd02671 131 LVLRTRCLECET-FTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHY 209 (332)
T ss_pred EEEEEEeCCCCC-eeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCc
Confidence 999999999996 79999999999996554321 011134699999999999999964 999999987
Q ss_pred hhhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcC-----CCc
Q 008156 294 AAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINE-----MGE 368 (576)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~-----~~~ 368 (576)
+.+.|+..|.++|+||+|||+||.++. .+.
T Consensus 210 ---------------------------------------------~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~ 244 (332)
T cd02671 210 ---------------------------------------------TEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGG 244 (332)
T ss_pred ---------------------------------------------eeEEEEEEEecCCCEEEEEeeeeccccccccccCC
Confidence 899999999999999999999999764 245
Q ss_pred eeeeccceeeccccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCcc
Q 008156 369 LVKIWGHIAFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVD 448 (576)
Q Consensus 369 ~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (576)
..|++++|.||..||+.+++..
T Consensus 245 ~~Ki~~~v~fp~~L~~~~~~~~---------------------------------------------------------- 266 (332)
T cd02671 245 LSKVNTPLLTPLKLSLEEWSTK---------------------------------------------------------- 266 (332)
T ss_pred ceecCccccCccccccccccCC----------------------------------------------------------
Confidence 7899999999999999876622
Q ss_pred ccCCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEeccc
Q 008156 449 ELGCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVE 527 (576)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~ 527 (576)
.....|+|+|||+|.|. +++|||+||||
T Consensus 267 -----------------------------------------------~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr---- 295 (332)
T cd02671 267 -----------------------------------------------PKNDVYRLFAVVMHSGATISSGHYTAYVR---- 295 (332)
T ss_pred -----------------------------------------------CCCCeEEEEEEEEEcCCCCCCCeEEEEEE----
Confidence 12347999999999998 89999999997
Q ss_pred CCCCCCCCCCCCCCCceEEEeCCceeeechhhhcc---------CceEEEEEE
Q 008156 528 SHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLA---------AEASLLFYE 571 (576)
Q Consensus 528 ~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~---------~~aYlLfY~ 571 (576)
||+|||+.|+.++++++.. ..||||||+
T Consensus 296 ----------------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 296 ----------------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred ----------------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999999999999988864 359999995
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-58 Score=471.25 Aligned_cols=289 Identities=26% Similarity=0.320 Sum_probs=244.8
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCC-CCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhh
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECE-EPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQ 154 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~ 154 (576)
||.|+||||||||+||+|+++|+|++++++...... ......+++.+|+.||..|+... ..++|..|+..++...+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~---~~i~p~~~~~~l~~~~~ 77 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ---EPVPPIEFLQLLRMAFP 77 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCC---CcCCcHHHHHHHHHHCc
Confidence 899999999999999999999999999988765321 12246789999999999997533 48999999999999999
Q ss_pred ccC------CCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhccccccccee
Q 008156 155 NFN------LTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGIL 228 (576)
Q Consensus 155 ~f~------~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~ 228 (576)
.|. .++||||||||.+||+.|++++..... ..+.|.++|.|.+
T Consensus 78 ~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~-------------------------------~~~~i~~~F~g~~ 126 (305)
T cd02657 78 QFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGS-------------------------------KGSFIDQLFGIEL 126 (305)
T ss_pred CcccccCCCCccccCHHHHHHHHHHHHHHHhcccCC-------------------------------CCcHHHHhhceEE
Confidence 984 459999999999999999999864110 0122678999999
Q ss_pred eceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHH
Q 008156 229 GSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEME 308 (576)
Q Consensus 229 ~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~ 308 (576)
.+.++|..|+...+.+.|+|++|+|+++... ...+|+++|+.++..+.. ..|+.|+..
T Consensus 127 ~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~-----~~~~l~~~L~~~~~~~~~--~~~~~~~~~--------------- 184 (305)
T cd02657 127 ETKMKCTESPDEEEVSTESEYKLQCHISITT-----EVNYLQDGLKKGLEEEIE--KHSPTLGRD--------------- 184 (305)
T ss_pred EEEEEcCCCCCCCccccccceEEEeecCCCc-----ccccHHHHHHHhhhhhhh--hcCcccCCC---------------
Confidence 9999999999326889999999999655432 235899999999987654 468888875
Q ss_pred HHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-CceeeeccceeeccccccCcC
Q 008156 309 IEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDLFPF 387 (576)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl~~~ 387 (576)
..+.|+..|.++|+||+|||+||.|+.. +...|+..+|.||+.|||.+|
T Consensus 185 ------------------------------~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~ 234 (305)
T cd02657 185 ------------------------------AIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYEL 234 (305)
T ss_pred ------------------------------ceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccc
Confidence 7789999999999999999999999875 567899999999999999999
Q ss_pred ccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCC
Q 008156 388 VKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPP 467 (576)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (576)
+..
T Consensus 235 ~~~----------------------------------------------------------------------------- 237 (305)
T cd02657 235 CTP----------------------------------------------------------------------------- 237 (305)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 831
Q ss_pred CCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEE
Q 008156 468 TQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFC 546 (576)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~ 546 (576)
+..|+|+|||+|.|. +++|||+||+|.. .+++||+
T Consensus 238 ------------------------------~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~--------------~~~~W~~ 273 (305)
T cd02657 238 ------------------------------SGYYELVAVITHQGRSADSGHYVAWVRRK--------------NDGKWIK 273 (305)
T ss_pred ------------------------------CCcEEEEEEEEecCCCCCCcEEEEEEEcC--------------CCCeEEE
Confidence 126999999999997 9999999999963 3489999
Q ss_pred EeCCceeeechhhhcc-------CceEEEEEE
Q 008156 547 ISDSQVYSVSVNDVLA-------AEASLLFYE 571 (576)
Q Consensus 547 ~nD~~V~~v~~~~v~~-------~~aYlLfY~ 571 (576)
|||+.|++++.++|+. ..||||||+
T Consensus 274 fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 274 FDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 9999999999999985 469999996
No 10
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.9e-58 Score=485.71 Aligned_cols=302 Identities=23% Similarity=0.240 Sum_probs=246.0
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
.++++||.|+|||||||||||+|+++|+||++++.............+++.+|..+++.+|+....+..++|..|+.++.
T Consensus 116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~ 195 (440)
T cd02669 116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVS 195 (440)
T ss_pred cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHH
Confidence 45889999999999999999999999999999987544321112456899999999999987554467999999999998
Q ss_pred HHh-hccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceee
Q 008156 151 LYI-QNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILG 229 (576)
Q Consensus 151 ~~~-~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~ 229 (576)
... +.|.+++||||||||.+||+.||+++...... -.+.|..+|+|++.
T Consensus 196 ~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~------------------------------~~~ii~~~F~G~l~ 245 (440)
T cd02669 196 KVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKP------------------------------NSSIIHDCFQGKVQ 245 (440)
T ss_pred hhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCC------------------------------CCCcceeccCceEE
Confidence 864 57889999999999999999999998643110 02337789999999
Q ss_pred ceEEecCC--------------CCcccccccccceeecccCCCCC------CCCCCCCCHHHHHhhhcCeeeccccccCC
Q 008156 230 SILTCQSC--------------LSQISLDYQFFHSLPLSPVLDSG------STIPFGCTLEDCLKQFLTAEQLENYHCSH 289 (576)
Q Consensus 230 s~i~C~~C--------------~~~~s~~~e~f~~LsL~~~~~~~------~~~~~~~sL~~~L~~~~~~E~i~~~~C~~ 289 (576)
+.++|..| ++..+.+.++|++|+|+++.... ....+..+|+++|+. |.|+.
T Consensus 246 ~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k---------y~~~~ 316 (440)
T cd02669 246 IETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK---------YDGKT 316 (440)
T ss_pred EEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHh---------cCCcc
Confidence 99998754 43457778999999997654321 112234688888865 66777
Q ss_pred cchhhhhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCce
Q 008156 290 CWHIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGEL 369 (576)
Q Consensus 290 C~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~ 369 (576)
|... ..+.|+..|.+||+||+||||||.|+. +..
T Consensus 317 c~~~---------------------------------------------~~a~k~~~I~~LP~vLiihLKRF~~~~-~~~ 350 (440)
T cd02669 317 ETEL---------------------------------------------KDSLKRYLISRLPKYLIFHIKRFSKNN-FFK 350 (440)
T ss_pred ceec---------------------------------------------ccceEEEEEeeCCcEEEEEEecccCCC-Ccc
Confidence 7765 778999999999999999999999975 456
Q ss_pred eeeccceeeccc-cccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCcc
Q 008156 370 VKIWGHIAFPLI-LDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVD 448 (576)
Q Consensus 370 ~Ki~~~V~fP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (576)
.|+.+.|.||.. |||.+|+....
T Consensus 351 ~K~~t~V~FP~~~LDm~~y~~~~~-------------------------------------------------------- 374 (440)
T cd02669 351 EKNPTIVNFPIKNLDLSDYVHFDK-------------------------------------------------------- 374 (440)
T ss_pred ccCCCEEECCCCccchhhhhCccc--------------------------------------------------------
Confidence 899999999997 89999995310
Q ss_pred ccCCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCC-CCCeEEEEEEeccc
Q 008156 449 ELGCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRV-GSGHYTVYRSVRVE 527 (576)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~-~sGHY~ayvr~~~~ 527 (576)
........|+|+|||+|.|+. ++|||+||+|+.
T Consensus 375 --------------------------------------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~-- 408 (440)
T cd02669 375 --------------------------------------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHK-- 408 (440)
T ss_pred --------------------------------------------cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcC--
Confidence 011244589999999999995 999999999963
Q ss_pred CCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCceEEEEEE
Q 008156 528 SHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYE 571 (576)
Q Consensus 528 ~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~ 571 (576)
.+++||+|||+.|+++++++|+..+||||||+
T Consensus 409 ------------~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 409 ------------STNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred ------------CCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 47899999999999999999999999999996
No 11
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7e-57 Score=459.93 Aligned_cols=300 Identities=30% Similarity=0.463 Sum_probs=251.7
Q ss_pred CCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHh
Q 008156 74 VPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYI 153 (576)
Q Consensus 74 ~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~ 153 (576)
|+||.|+||||||||+||+|+++|+|+++++.............++.++|+.++..++. .....+.|..|..++....
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~p~~~~~~l~~~~ 78 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALA--SSGPGSAPRIFSSNLKQIS 78 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHh--CCCCccChHHHHHHHHHHH
Confidence 78999999999999999999999999999986543322223456899999999999864 3447899999999999999
Q ss_pred hccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEE
Q 008156 154 QNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILT 233 (576)
Q Consensus 154 ~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~ 233 (576)
+.|..+.||||+|||.+||+.|++++.......... .....-...+..+|+|.+.++++
T Consensus 79 ~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~ 137 (304)
T cd02661 79 KHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAV---------------------DPSSQETTLVQQIFGGYLRSQVK 137 (304)
T ss_pred HhhcCcchhhHHHHHHHHHHHHHHHHhhhccccccc---------------------CccccCCChhhhcCCcEEeeeEE
Confidence 999999999999999999999998875432211000 00000122377899999999999
Q ss_pred ecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHHHH
Q 008156 234 CQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEMEIE 310 (576)
Q Consensus 234 C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~~~ 310 (576)
|..|+. .+.+.|+|+.|+|+++. ..+|+++|+.|+.+|.+++ |.|++|+..
T Consensus 138 C~~C~~-~s~~~e~~~~l~l~i~~--------~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~----------------- 191 (304)
T cd02661 138 CLNCKH-VSNTYDPFLDLSLDIKG--------ADSLEDALEQFTKPEQLDGENKYKCERCKKK----------------- 191 (304)
T ss_pred eCCCCC-CcCccccceeeeeecCC--------CCcHHHHHHHhcCceeeCCCCCeeCCCCCCc-----------------
Confidence 999995 68899999999995432 2499999999999999886 899999987
Q ss_pred HHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccC
Q 008156 311 ELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKS 390 (576)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~ 390 (576)
..+.++..|.++|++|+|||+||.|+ ...|+.+.|.||..|||.+|+..
T Consensus 192 ----------------------------~~~~~~~~i~~~P~iL~i~l~Rf~~~---~~~Ki~~~v~f~~~L~l~~~~~~ 240 (304)
T cd02661 192 ----------------------------VKASKQLTIHRAPNVLTIHLKRFSNF---RGGKINKQISFPETLDLSPYMSQ 240 (304)
T ss_pred ----------------------------cceEEEEEEecCCcEEEEEEeccccC---CccccCCeEecCCeechhhcccc
Confidence 88999999999999999999999987 35799999999999999999843
Q ss_pred CCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCC
Q 008156 391 GVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQS 470 (576)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (576)
+
T Consensus 241 ~------------------------------------------------------------------------------- 241 (304)
T cd02661 241 P------------------------------------------------------------------------------- 241 (304)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeC
Q 008156 471 GSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISD 549 (576)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD 549 (576)
......|+|+|||+|.|. +++|||+||+|. .+++||+|||
T Consensus 242 ------------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~---------------~~~~W~~~nD 282 (304)
T cd02661 242 ------------------------NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS---------------SNGKWYNMDD 282 (304)
T ss_pred ------------------------CCCCceeeEEEEEEECCCCCCCcCCEEEEEC---------------CCCCEEEEeC
Confidence 112347999999999999 699999999995 3689999999
Q ss_pred CceeeechhhhccCceEEEEEE
Q 008156 550 SQVYSVSVNDVLAAEASLLFYE 571 (576)
Q Consensus 550 ~~V~~v~~~~v~~~~aYlLfY~ 571 (576)
+.|+++++++|+...||||||-
T Consensus 283 ~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 283 SKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred CeeEECCHHHhcCCCcEEEEeC
Confidence 9999999999999999999993
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-56 Score=461.80 Aligned_cols=308 Identities=26% Similarity=0.393 Sum_probs=246.9
Q ss_pred CCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHH
Q 008156 73 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELY 152 (576)
Q Consensus 73 ~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~ 152 (576)
|.+||.|+||||||||+||+|+++|+|+++++..... .......++..+|+.||..|+.... ..+.|..+.......
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~lf~~~~~~~~--~~~~~~~~~~~~~~~ 77 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-EDDDDNKSVPLALQRLFLFLQLSES--PVKTTELTDKTRSFG 77 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-ccCcccccHHHHHHHHHHHHHhCCc--cccCcchhheeccCC
Confidence 5799999999999999999999999999999986422 1123467899999999999975332 344554443122222
Q ss_pred hhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceE
Q 008156 153 IQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSIL 232 (576)
Q Consensus 153 ~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i 232 (576)
...|..+.||||+|||.+||+.|++++..... .+.|..+|.|.+...+
T Consensus 78 ~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~--------------------------------~~~i~~lF~g~~~~~~ 125 (334)
T cd02659 78 WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQ--------------------------------EGLIKNLFGGKLVNYI 125 (334)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHHhccCcc--------------------------------cchhhhhCceEEEeEE
Confidence 35677899999999999999999998864211 1227789999999999
Q ss_pred EecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHHH
Q 008156 233 TCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEMEI 309 (576)
Q Consensus 233 ~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~~ 309 (576)
+|..|++ .+...++|+.|+|++.+ ..+|+++|+.|+.+|.+++ |.|++|+..
T Consensus 126 ~C~~C~~-~s~~~e~f~~l~l~i~~--------~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~---------------- 180 (334)
T cd02659 126 ICKECPH-ESEREEYFLDLQVAVKG--------KKNLEESLDAYVQGETLEGDNKYFCEKCGKK---------------- 180 (334)
T ss_pred EecCCCc-eecccccceEEEEEcCC--------CCCHHHHHHHhcCeeEecCCccEecCcCCCc----------------
Confidence 9999985 79999999999995432 3599999999999999986 999999986
Q ss_pred HHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-CceeeeccceeeccccccCcCc
Q 008156 310 EELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDLFPFV 388 (576)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl~~~~ 388 (576)
+.+.++..|.++|++|+|||+||.|+.. +...|++.+|.||..|||.+|+
T Consensus 181 -----------------------------~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~ 231 (334)
T cd02659 181 -----------------------------VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYT 231 (334)
T ss_pred -----------------------------ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCcccc
Confidence 7899999999999999999999999864 6678999999999999999999
Q ss_pred cCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCC
Q 008156 389 KSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPT 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (576)
......+.. . .
T Consensus 232 ~~~~~~~~~-----------------------------------------------------~-------------~--- 242 (334)
T cd02659 232 EKGLAKKEG-----------------------------------------------------D-------------S--- 242 (334)
T ss_pred ccccccccc-----------------------------------------------------c-------------c---
Confidence 553210000 0 0
Q ss_pred CCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEe
Q 008156 469 QSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCIS 548 (576)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~n 548 (576)
.........|+|+|||+|.|+.++|||+||+|.. .+++|++||
T Consensus 243 -----------------------~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~--------------~~~~W~~~n 285 (334)
T cd02659 243 -----------------------EKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDR--------------DDGKWYKFN 285 (334)
T ss_pred -----------------------cccCCCCeeEEEEEEEEecCCCCCCCeEEEEECC--------------CCCceEEEe
Confidence 0011234579999999999999999999999963 478999999
Q ss_pred CCceeeechhhhcc----------------------CceEEEEEEeccC
Q 008156 549 DSQVYSVSVNDVLA----------------------AEASLLFYERIIE 575 (576)
Q Consensus 549 D~~V~~v~~~~v~~----------------------~~aYlLfY~rv~~ 575 (576)
|+.|+++++++|++ ..||||||+|.++
T Consensus 286 D~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 286 DDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKSP 334 (334)
T ss_pred CcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeCC
Confidence 99999999999962 3499999999764
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-57 Score=461.94 Aligned_cols=329 Identities=26% Similarity=0.409 Sum_probs=273.5
Q ss_pred CCCCCcccCCCchhhHHHHHHHhccchhHHHHHhh-----hccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHH
Q 008156 72 CLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKV-----MGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVM 146 (576)
Q Consensus 72 ~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~-----~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~ 146 (576)
.+.+||.|+||||||||.||||.|+++||+|+..- ....+.++....+..+++.|++++. .....+++|..|.
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly--~~~~haf~Ps~fK 340 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLY--DGNLHAFTPSGFK 340 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHh--CccccccChHHHH
Confidence 37899999999999999999999999999998642 1222345677889999999999996 4566899999999
Q ss_pred HHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhh-------hc
Q 008156 147 LAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWR-------KH 219 (576)
Q Consensus 147 ~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 219 (576)
..++..+..|.++.|||.+||+.+|||.||+.++++..+++.+-.+....... .-...+.+.|. +.
T Consensus 341 ~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~-------~vKk~a~ecW~~H~kRNdSi 413 (823)
T COG5560 341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDV-------VVKKKAKECWWEHLKRNDSI 413 (823)
T ss_pred HHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchH-------HHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999998877766544332211111 11122333443 34
Q ss_pred ccccccceeeceEEecCCCCcccccccccceeecccCCCC------------CCC--C----------------------
Q 008156 220 FFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDS------------GST--I---------------------- 263 (576)
Q Consensus 220 i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~------------~~~--~---------------------- 263 (576)
|.++|.|-.++++.|..|+ ..+++++||++|+||++... +.. .
T Consensus 414 ItdLFqgmyKSTL~Cp~C~-~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~g 492 (823)
T COG5560 414 ITDLFQGMYKSTLTCPGCG-SVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYG 492 (823)
T ss_pred HHHHHHHHhhceeeccCcC-ceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhc
Confidence 8899999999999999999 58999999999999644321 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 008156 264 -------------------------------------------------------------------------------- 263 (576)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (576)
T Consensus 493 k~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~ 572 (823)
T COG5560 493 KLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKA 572 (823)
T ss_pred cCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecch
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008156 264 -------------------------------------------------------------------------------- 263 (576)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (576)
T Consensus 573 ~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~ 652 (823)
T COG5560 573 SIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKR 652 (823)
T ss_pred hhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccc
Confidence
Q ss_pred -------------------CCCCCHHHHHhhhcCeeecc---ccccCCcchhhhhhhhccccccHHHHHHHHHhhccCcc
Q 008156 264 -------------------PFGCTLEDCLKQFLTAEQLE---NYHCSHCWHIAAIKYLSITEANEMEIEELRRCSAQDSC 321 (576)
Q Consensus 264 -------------------~~~~sL~~~L~~~~~~E~i~---~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (576)
...+||++||..|.++|.+. .++|+.|+..
T Consensus 653 y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkef---------------------------- 704 (823)
T COG5560 653 YLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEF---------------------------- 704 (823)
T ss_pred hhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhh----------------------------
Confidence 37799999999999999984 4999999998
Q ss_pred ccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccc-cccCcCccCCCCCCCchhH
Q 008156 322 NCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLI-LDLFPFVKSGVGINDLDES 400 (576)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~-Ldl~~~~~~~~~~~~~~~~ 400 (576)
..|+|++.|+++|.||+||||||.+... .+.||.+-|.||.. |||+.+...-
T Consensus 705 -----------------rqasKqmelwrlP~iLiihLkRFss~rs-frdKiddlVeyPiddldLs~~~~~~--------- 757 (823)
T COG5560 705 -----------------RQASKQMELWRLPMILIIHLKRFSSVRS-FRDKIDDLVEYPIDDLDLSGVEYMV--------- 757 (823)
T ss_pred -----------------hhhhhhhhhhcCChheeeehhhhhhccc-chhhhhhhhccccccccccceEEee---------
Confidence 9999999999999999999999997554 36899999999987 9998877331
Q ss_pred HhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCCccCCCcC
Q 008156 401 WQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNVRGRDIQ 480 (576)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (576)
T Consensus 758 -------------------------------------------------------------------------------- 757 (823)
T COG5560 758 -------------------------------------------------------------------------------- 757 (823)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhh
Q 008156 481 MQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDV 560 (576)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v 560 (576)
.++...|.|+||=.|+|...+|||+||+|.+ .+++||+|||.+|++|.+++.
T Consensus 758 --------------~~p~liydlyavDNHygglsgGHYtAyarn~--------------~n~~wy~fdDsritevdped~ 809 (823)
T COG5560 758 --------------DDPRLIYDLYAVDNHYGGLSGGHYTAYARNF--------------ANNGWYLFDDSRITEVDPEDS 809 (823)
T ss_pred --------------cCcceEEEeeeccccccccCCcceeeeeecc--------------cCCceEEecCccccccCcccc
Confidence 1233589999999999999999999999965 688999999999999999999
Q ss_pred ccCceEEEEEEec
Q 008156 561 LAAEASLLFYERI 573 (576)
Q Consensus 561 ~~~~aYlLfY~rv 573 (576)
....||+|||+|.
T Consensus 810 vtssaYvLFyrrk 822 (823)
T COG5560 810 VTSSAYVLFYRRK 822 (823)
T ss_pred ccceeEEEEEEec
Confidence 9999999999995
No 14
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-53 Score=418.20 Aligned_cols=233 Identities=40% Similarity=0.668 Sum_probs=196.7
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhhc
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQN 155 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~~ 155 (576)
||.|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999987642
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEec
Q 008156 156 FNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQ 235 (576)
Q Consensus 156 f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~ 235 (576)
.||||||||..||+.|+.. +.++|.|.+.+.++|.
T Consensus 33 ----~QqDa~EFl~~ll~~l~~~-----------------------------------------i~~~F~g~~~~~i~C~ 67 (240)
T cd02662 33 ----EQQDAHELFQVLLETLEQL-----------------------------------------LKFPFDGLLASRIVCL 67 (240)
T ss_pred ----hhcCHHHHHHHHHHHHHHh-----------------------------------------ccCccccEEEEEEEeC
Confidence 8999999999999999922 5679999999999999
Q ss_pred CCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHHHHh
Q 008156 236 SCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRRC 315 (576)
Q Consensus 236 ~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~ 315 (576)
.|++....+.|+|++|+|+++.... ....+|++||+.|+.+|.++++.|++|.
T Consensus 68 ~C~~~s~~~~e~f~~LsL~ip~~~~---~~~~sl~~~L~~~~~~E~l~~~~C~~C~------------------------ 120 (240)
T cd02662 68 QCGESSKVRYESFTMLSLPVPNQSS---GSGTTLEHCLDDFLSTEIIDDYKCDRCQ------------------------ 120 (240)
T ss_pred CCCCccCcceeeeeeeEecccccCC---CCCCCHHHHHHHhcCcccccCcCCCCCe------------------------
Confidence 9997434469999999996544321 2346999999999999999999999983
Q ss_pred hccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCCCC
Q 008156 316 SAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGIN 395 (576)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~ 395 (576)
..|.++|+||+|||+||.|+..+...|++.+|.||+.| ..
T Consensus 121 -----------------------------~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l-------~~---- 160 (240)
T cd02662 121 -----------------------------TVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL-------PK---- 160 (240)
T ss_pred -----------------------------EEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc-------CC----
Confidence 47999999999999999999877789999999999988 10
Q ss_pred CchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCCcc
Q 008156 396 DLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNVR 475 (576)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (576)
T Consensus 161 -------------------------------------------------------------------------------- 160 (240)
T cd02662 161 -------------------------------------------------------------------------------- 160 (240)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCC------CCCCCCCCCCceEEEeC
Q 008156 476 GRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEEN------PNEHFETPLTHWFCISD 549 (576)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~------~~~~~~~~~~~W~~~nD 549 (576)
..|+|+|||+|.|+.++|||+||+|.+...+... .........++||+|||
T Consensus 161 -----------------------~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD 217 (240)
T cd02662 161 -----------------------VLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISD 217 (240)
T ss_pred -----------------------ceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEec
Confidence 1599999999999999999999999752211100 01112234689999999
Q ss_pred Cceeeechhhh-ccCceEEEEEE
Q 008156 550 SQVYSVSVNDV-LAAEASLLFYE 571 (576)
Q Consensus 550 ~~V~~v~~~~v-~~~~aYlLfY~ 571 (576)
+.|++|+.++| ....||||||+
T Consensus 218 ~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 218 TTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred hheEEeCHHHHhhCCCEEEEEeC
Confidence 99999999999 88889999996
No 15
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-55 Score=439.09 Aligned_cols=407 Identities=19% Similarity=0.197 Sum_probs=307.8
Q ss_pred cccCCchHHHHHHhhhcCCCCCCcchhhhcccc-----ccccccchhhhhhhccccCCCcccccchhhhhhhhccCCCCC
Q 008156 2 KCEGATSVRALVLQSLKNGFLPHMKWVSASGLL-----GILGVAGFVLALKKDAKIGNLSGFSWLSEKENRLEKLCLVPG 76 (576)
Q Consensus 2 ~~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~-----~~~g~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~G 76 (576)
.+||||||||||| +|||+++||..|.+++|+ ||||+++++ +.+|.....| +++..+.. .....++++|
T Consensus 35 ~LTgV~PeRQKv~--vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~~---~e~p~~~~~~-~ed~~e~~-~~~~~~lp~g 107 (473)
T KOG1872|consen 35 ALTGVPPERQKVM--VKGGLAKDDVDWGALQIKPNETLMMMGTAEAG---LEPPSLPPTF-IEDSAEQF-ASAALPLPVG 107 (473)
T ss_pred HhcCCCccceeEE--EecccccccccccccccCCCCEEEeecccccc---ccCcccCCcc-hhhhhHHH-HHhhccCCcc
Confidence 5899999999999 999999999999999999 699999997 6888888888 47776443 2555678999
Q ss_pred cccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCC---CCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHh
Q 008156 77 LQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPD---EDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYI 153 (576)
Q Consensus 77 L~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~---~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~ 153 (576)
|.|+|||||||+.+|||..+|+++..+..+.......+ ....++.+++.+|+.|.+. .++.|..+++.++..+
T Consensus 108 l~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~----~~v~pi~llqtl~~~~ 183 (473)
T KOG1872|consen 108 LPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK----GAVAPINLLQTLSSQY 183 (473)
T ss_pred ccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----CCcchHHHHHHHHHHh
Confidence 99999999999999999999999998877664432211 2457888999999999653 6999999999999999
Q ss_pred hccCC------CccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccce
Q 008156 154 QNFNL------TSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGI 227 (576)
Q Consensus 154 ~~f~~------~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~ 227 (576)
|+|.. +.||||.|++..+|..++..+....... .....+..+|++.
T Consensus 184 Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~----------------------------~~~~~~d~~f~~~ 235 (473)
T KOG1872|consen 184 PQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP----------------------------CLEAEAAAGFGAE 235 (473)
T ss_pred HHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc----------------------------chhHHHHHhhccc
Confidence 99987 8999999999999999988765432211 1112256688888
Q ss_pred eeceEEecCCCCccccc-ccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhc--cccc
Q 008156 228 LGSILTCQSCLSQISLD-YQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLS--ITEA 304 (576)
Q Consensus 228 ~~s~i~C~~C~~~~s~~-~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~--~~~~ 304 (576)
+..++.|..-....... .|.|+.|+. .......++. ++.+
T Consensus 236 ~~~t~~~~e~e~~~~~~~~E~~~~L~c-------------------------------------~i~~~~~~~k~Gl~~~ 278 (473)
T KOG1872|consen 236 FSTTMSCSEGEDEGGGAGRELVDQLKC-------------------------------------IINKTVHDMRFGLKSG 278 (473)
T ss_pred cccceeeccCcccccccccccccccce-------------------------------------EEeeeechhhhhhhhh
Confidence 99899998877532222 555554443 2222333343 8888
Q ss_pred cHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-Cceeeeccceeeccccc
Q 008156 305 NEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILD 383 (576)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ld 383 (576)
+.+++++.+..++++ ..+.|.+.|++||+||.|++.||+|+.. +...||.+.|.||..||
T Consensus 279 ~~e~~~K~s~~lgr~-------------------a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld 339 (473)
T KOG1872|consen 279 LSEEIQKISSILGRP-------------------AAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLD 339 (473)
T ss_pred hhhhhhccCcccCCC-------------------hHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhh
Confidence 999999999999998 8999999999999999999999999976 66789999999999999
Q ss_pred cCcCccCCCCCCCchhHH-hhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCC
Q 008156 384 LFPFVKSGVGINDLDESW-QRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGE 462 (576)
Q Consensus 384 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (576)
..++|+++++.++..... .|+..+...+.+- ..... ..++...+
T Consensus 340 ~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~-~~k~~--------------~~~~~~~~-------------------- 384 (473)
T KOG1872|consen 340 QQDLCTPELKKKLLCRRKKHRKVEDKKKEEDV-MPKVK--------------GAQERLKE-------------------- 384 (473)
T ss_pred HHHhhCHHhhcCccchHHHHHHHHhcCCchhh-ccccc--------------CcCccccc--------------------
Confidence 999999999988877633 3333221111100 00000 00000000
Q ss_pred CCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCC
Q 008156 463 SILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPL 541 (576)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~ 541 (576)
...+ ..-+......+.++.|.|+|||+|.|+ ..+|||++|+|. ..
T Consensus 385 ----------------~~~e---~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~---------------s~ 430 (473)
T KOG1872|consen 385 ----------------VPLE---GMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRV---------------SE 430 (473)
T ss_pred ----------------cccc---chhccccccccccceeeeeEeeeccccccCCCcceEEEec---------------cC
Confidence 0000 000000011223789999999999999 999999999996 46
Q ss_pred CceEEEeCCceeeechhhhccCc-------eEEEEEEe
Q 008156 542 THWFCISDSQVYSVSVNDVLAAE-------ASLLFYER 572 (576)
Q Consensus 542 ~~W~~~nD~~V~~v~~~~v~~~~-------aYlLfY~r 572 (576)
+.|++|||+.|+.|..+++++.. ||+|+|+-
T Consensus 431 ~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~ 468 (473)
T KOG1872|consen 431 DKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKA 468 (473)
T ss_pred CceeeccccccccccccceeeecCCCccchhhheeecc
Confidence 79999999999999999998653 99999974
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-53 Score=399.03 Aligned_cols=333 Identities=23% Similarity=0.256 Sum_probs=239.3
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHH-----HhhhccCCCCCCCC-hHHHHHHHHHHHHHhcCCCCceeChHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFL-----QKVMGECEEPDEDL-PLTVALASLLEELCLVGETRLVLSPQK 144 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l-----~~~~~~~~~~~~~~-~l~~~L~~L~~~l~~~~~~~~~i~p~~ 144 (576)
...|.||.|+|||||||++||||+++..|...| ++........+... .+...+..|...+- .-+...|+|+.
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~--~Hg~~sis~~n 145 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPG--CHGPKSISPRN 145 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccc--cCCCcccchHH
Confidence 347999999999999999999999999998843 33333333333344 44455555555552 23456799999
Q ss_pred HHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCC-CCchhhhhhhhhhhhhchhhhhhhHHhhhh----hhc
Q 008156 145 VMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPN-ESSLVDAFEAASCRILSLKRREVQSEQKRW----RKH 219 (576)
Q Consensus 145 ~~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 219 (576)
|+..++..++.|++.+|||+|||+.++||.||++++....+. ...+.+.. ...+.-.+.......|++.. .+.
T Consensus 146 F~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~--e~~Reel~l~~~S~~EWn~~L~sn~S~ 223 (415)
T COG5533 146 FIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEF--EEVREELPLSHFSHHEWNLHLRSNKSL 223 (415)
T ss_pred HHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHH--HHHHhhcCcchhhhhhhHHhhccchHH
Confidence 999999999999999999999999999999999998754431 11122111 11121122222222222211 234
Q ss_pred ccccccceeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhh
Q 008156 220 FFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAI 296 (576)
Q Consensus 220 i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~ 296 (576)
+.+.|.|+..++++|..|++ +|+++.+|..|.+++..- ..+.|.+||+.|.+.|.+++ |.|++|+.+
T Consensus 224 v~~~f~gq~~srlqC~~C~~-TStT~a~fs~l~vp~~~v------~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k--- 293 (415)
T COG5533 224 VAKTFFGQDKSRLQCEACNY-TSTTIAMFSTLLVPPYEV------VQLGLQECIDRFYEEEKLEGKDAWRCPKCGRK--- 293 (415)
T ss_pred HHHHHhhhhhhhhhhhhcCC-ceeEEeccceeeeccchh------eeecHHHHHHHhhhHHhhcCcccccCchhccc---
Confidence 66789999999999999997 799999999999954332 23569999999999999975 999999987
Q ss_pred hhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccce
Q 008156 297 KYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHI 376 (576)
Q Consensus 297 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V 376 (576)
..+.|++.|.++|++||||++||... |
T Consensus 294 ------------------------------------------~ss~K~~~I~~lP~~LII~i~RF~i~-----------V 320 (415)
T COG5533 294 ------------------------------------------ESSRKRMEILVLPDVLIIHISRFHIS-----------V 320 (415)
T ss_pred ------------------------------------------ccchheEEEEecCceEEEEeeeeeEE-----------e
Confidence 88999999999999999999999843 3
Q ss_pred eeccccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCcccc
Q 008156 377 AFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHE 456 (576)
Q Consensus 377 ~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (576)
..|..||+..+..........
T Consensus 321 ~~~~kiD~p~gw~~~~~~e~~----------------------------------------------------------- 341 (415)
T COG5533 321 MGRKKIDTPQGWKNTASVEVN----------------------------------------------------------- 341 (415)
T ss_pred ecccccCCCcchhccCCceec-----------------------------------------------------------
Confidence 444555555554221100000
Q ss_pred ccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCC
Q 008156 457 KEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEH 536 (576)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~ 536 (576)
.+ ...+.-..-.+..|+|.|||||.|+.++|||+++|+.
T Consensus 342 --------v~---------------------~~f~~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~------------ 380 (415)
T COG5533 342 --------VT---------------------LLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR------------ 380 (415)
T ss_pred --------cc---------------------ccccCCCCCCccceeEEEEEeecceecCceeEEeeee------------
Confidence 00 0000002234568999999999999999999999995
Q ss_pred CCCCCCceEEEeCCceeeechhhhc-cCceEEEEEEecc
Q 008156 537 FETPLTHWFCISDSQVYSVSVNDVL-AAEASLLFYERII 574 (576)
Q Consensus 537 ~~~~~~~W~~~nD~~V~~v~~~~v~-~~~aYlLfY~rv~ 574 (576)
++.|+.|||+.|+.++..--. ...+|||||+|..
T Consensus 381 ----~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~~ 415 (415)
T COG5533 381 ----SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRSS 415 (415)
T ss_pred ----cCceEEechhheeeccceecccCCcceEEEEEecC
Confidence 799999999999999664333 3469999999963
No 17
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-53 Score=435.22 Aligned_cols=280 Identities=21% Similarity=0.264 Sum_probs=225.4
Q ss_pred hhhccccc--cccccchhhhhhhccccCCCcccccchhhh----hhhhccCCCCCcccCCCchhhHHHHHHHhccchhHH
Q 008156 28 VSASGLLG--ILGVAGFVLALKKDAKIGNLSGFSWLSEKE----NRLEKLCLVPGLQNLGNNCFLNVILQALASCTCFLP 101 (576)
Q Consensus 28 ~~~~~~~~--~~g~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~ 101 (576)
++.+||.| |.|+...+..+.-.-+.. .+|..-.+ ..+..+++.+||+|+||+||||||+|+|+++|.|..
T Consensus 259 l~hfGId~~~m~kteksl~elel~~N~i----~Ew~~~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~ 334 (763)
T KOG0944|consen 259 LSHFGIDMAKMDKTEKSLVELELDQNRI----WEWEALEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQR 334 (763)
T ss_pred HHhcCccHHHhccchhHHHHHHHHhhcc----cCceeeccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHH
Confidence 45667775 888888876665543311 24432211 224557899999999999999999999999999977
Q ss_pred HHHhh--hccCCCCCCCChHHHHHHHHHHHHHhcCCCC--------ceeChHHHHHHHHHHhhccCCCccccHHHHHHHH
Q 008156 102 FLQKV--MGECEEPDEDLPLTVALASLLEELCLVGETR--------LVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHL 171 (576)
Q Consensus 102 ~l~~~--~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~--------~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~L 171 (576)
..... ...+...++..+|.++|.+|...|.+...+. ..|+|..|...+++.+|.|...+||||+|||.+|
T Consensus 335 ~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfL 414 (763)
T KOG0944|consen 335 RYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFL 414 (763)
T ss_pred hhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHH
Confidence 65544 2234446688999999999999996533322 4799999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEecCCCCccccccccccee
Q 008156 172 MSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSL 251 (576)
Q Consensus 172 ld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~L 251 (576)
|+.|++...... ..+.++|...+..++.|..|+. .+.+++.-+.|
T Consensus 415 l~ki~~n~rs~~----------------------------------~nptd~frF~ve~Rv~C~~c~k-VrYs~~~~~~i 459 (763)
T KOG0944|consen 415 LEKIRENSRSSL----------------------------------PNPTDLFRFEVEDRVSCLGCRK-VRYSYESEYLI 459 (763)
T ss_pred HHHHhhcccccC----------------------------------CCHHHHHHhhhhhhhhhhcccc-ccccchhheee
Confidence 999987654321 1156789999999999999995 68888887777
Q ss_pred ecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHHHHhhccCccccccccccCC
Q 008156 252 PLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLET 331 (576)
Q Consensus 252 sL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (576)
.|+++ ..+ .+...+.+..||+.||.+ .+++|+|..|+.+
T Consensus 460 ~lpv~-~~~-~v~~~v~~~~cleaff~p-q~~df~s~ac~~K-------------------------------------- 498 (763)
T KOG0944|consen 460 QLPVP-MTN-EVREKVPISACLEAFFEP-QVDDFWSTACGEK-------------------------------------- 498 (763)
T ss_pred Eeecc-ccc-cccccCCHHHHHHHhcCC-cchhhhhHhhcCc--------------------------------------
Confidence 77433 222 366778999999999999 6667999999998
Q ss_pred CCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCCCC
Q 008156 332 LPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGIN 395 (576)
Q Consensus 332 ~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~ 395 (576)
..|+|+.+|.+||+||+||..||.| ..|..+|+...|.+|+.|||+.|...+.++.
T Consensus 499 -------~~a~kt~~~ksfP~yLiiqv~rf~~-~dw~pkKld~~iempe~ldls~~rs~g~~p~ 554 (763)
T KOG0944|consen 499 -------KGATKTTRFKSFPDYLIIQVGRFTL-QDWVPKKLDVSIEMPEELDLSSYRSKGLQPG 554 (763)
T ss_pred -------cccccccccccCCceEEEEeeEEEe-cCceeeeeccceecchhhchhhhhhcCCCCc
Confidence 9999999999999999999999999 7789999999999999999999998775433
No 18
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-49 Score=421.53 Aligned_cols=334 Identities=34% Similarity=0.502 Sum_probs=256.3
Q ss_pred ccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhh-hccCC---CCCCCChHHHHHHHHHHHHHhcCCCCceeChHHH
Q 008156 70 KLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKV-MGECE---EPDEDLPLTVALASLLEELCLVGETRLVLSPQKV 145 (576)
Q Consensus 70 ~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~-~~~~~---~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~ 145 (576)
...+++||.|+|||||||++||||+.++.|+..++.. ..... ......++..++..++..++. ......+.|..|
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~s~~P~~f 375 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWH-GHGQFSVLPRRF 375 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhcc-CCCceecCcHHH
Confidence 3458999999999999999999999999999544332 22111 222556888889998888875 345677999999
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCC-CchhhhhhhhhhhhhchhhhhhhHHhhhhhh------
Q 008156 146 MLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNE-SSLVDAFEAASCRILSLKRREVQSEQKRWRK------ 218 (576)
Q Consensus 146 ~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 218 (576)
+..+..+.+.|.++.|||||||+.++++.||++++....+.. ........ ... ............|..
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~--~~~---~~~~~s~~s~~~w~~~~~~~d 450 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYL--LSE---LELSDSKKSLAEWLRYLEEED 450 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccc--ccc---ccccccchhHHHHHhhccccc
Confidence 999999999999999999999999999999999988654211 00000000 000 000001111111211
Q ss_pred -cccccccceeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhh
Q 008156 219 -HFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIA 294 (576)
Q Consensus 219 -~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~ 294 (576)
.|..+|.|++.+.++|..||+ .+.++++|.+|+|+++.. +.. ...++|++|++.|+..|.+++ |.|++|++.
T Consensus 451 ~~i~~lf~gQ~ks~Lkc~~cg~-~s~t~~~f~~lslpIp~~-~~~-~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~- 526 (653)
T KOG1868|consen 451 SKIGDLFVGQLKSYLKCQACGY-TSTTFETFTDLSLPIPKK-GFA-GGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHK- 526 (653)
T ss_pred hHHHHHHHHHHHhheehhhcCC-cceeeecceeeEEecccc-ccc-ccccchHhhhccccchhhcccccccCCccccCc-
Confidence 167899999999999999997 799999999999954432 221 125789999999999999998 999999986
Q ss_pred hhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccce--eEEEeecCCceEEEEeeceEEcCCCceeee
Q 008156 295 AIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTL--KKLSISHCPQILCIHLQRVSINEMGELVKI 372 (576)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki 372 (576)
.... |+..|.+||++|+|||+||.++.. ...|.
T Consensus 527 --------------------------------------------~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~-~~~k~ 561 (653)
T KOG1868|consen 527 --------------------------------------------ESSKTLKKLTILRLPKILIIHLKRFSSDGN-SFNKL 561 (653)
T ss_pred --------------------------------------------ccccccceeeeecCCHHHHHHHHHhccCcc-ccccc
Confidence 4453 999999999999999999998862 35689
Q ss_pred ccceeeccc-cccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccC
Q 008156 373 WGHIAFPLI-LDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELG 451 (576)
Q Consensus 373 ~~~V~fP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (576)
..-|.||.. +++.++....
T Consensus 562 ~~~v~~~~~~~~~~~~~~~~------------------------------------------------------------ 581 (653)
T KOG1868|consen 562 STGVDFPLREADLSPRFAEK------------------------------------------------------------ 581 (653)
T ss_pred ceeeccchHhhhhchhcccc------------------------------------------------------------
Confidence 999999986 6666544221
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCC
Q 008156 452 CTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEE 531 (576)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~ 531 (576)
.+....|+|+|||+|.|+.++|||+||+++.
T Consensus 582 -------------------------------------------~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~------ 612 (653)
T KOG1868|consen 582 -------------------------------------------GNNPKSYRLYAVVNHSGTLNSGHYTAYVYKN------ 612 (653)
T ss_pred -------------------------------------------CCCccceeeEEEEeccCcccCCceEEEEeec------
Confidence 1233359999999999999999999999963
Q ss_pred CCCCCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEeccC
Q 008156 532 NPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERIIE 575 (576)
Q Consensus 532 ~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv~~ 575 (576)
..+.|+.|||+.|+.+...+|....||||||+|+..
T Consensus 613 --------~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~ 648 (653)
T KOG1868|consen 613 --------EKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGI 648 (653)
T ss_pred --------CCCceEEecCeeeeccccccccCCCceEEEeecCCc
Confidence 578999999999999999999988999999999864
No 19
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-50 Score=415.26 Aligned_cols=319 Identities=27% Similarity=0.401 Sum_probs=262.8
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCC--CCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEE--PDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLA 148 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~--~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~ 148 (576)
..+.+||.|-|+|||||+++|-|.++|.++..+......... ...+..+.+.|+.+|.+|.. +.-.++-|..|.+.
T Consensus 92 p~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~--s~lQyyVPeg~Wk~ 169 (944)
T KOG1866|consen 92 PEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAA--SQLQYYVPEGFWKQ 169 (944)
T ss_pred CcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHH--HhhhhhcchhHHHH
Confidence 347999999999999999999999999999988776655221 11223399999999999954 55679999999999
Q ss_pred HHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhccccccccee
Q 008156 149 MELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGIL 228 (576)
Q Consensus 149 l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~ 228 (576)
++....-....+||||-|||+.|||.+++.+++...+.. +.+-|+|..
T Consensus 170 Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~l--------------------------------f~n~f~G~y 217 (944)
T KOG1866|consen 170 FRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQL--------------------------------FSNTFGGSY 217 (944)
T ss_pred hhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcHH--------------------------------HHHHhcCcc
Confidence 998877777889999999999999999999998765432 667899999
Q ss_pred eceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhcccccc
Q 008156 229 GSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEAN 305 (576)
Q Consensus 229 ~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~ 305 (576)
..+-.|..|.|. -...|.|+.|+|.+ . ..+|+++|++|.+.|.+|| |.|+||+.+
T Consensus 218 sdqKIC~~CpHR-Y~~eE~F~~l~l~i--------~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK------------ 275 (944)
T KOG1866|consen 218 SDQKICQGCPHR-YECEESFTTLNLDI--------R-HQNLEESLEQFVKGEVLEGANAYHCEKCDEK------------ 275 (944)
T ss_pred chhhhhccCCcc-cCccccceeeeeec--------c-cchHHHHHHHHHHHHHhcCcchhhhhhhhhh------------
Confidence 999999999985 58899999999943 3 4599999999999999998 999999998
Q ss_pred HHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-Cceeeeccceeecccccc
Q 008156 306 EMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDL 384 (576)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl 384 (576)
....|+..|.+||++|+||||||.||.. +...|.+.-++||.+|||
T Consensus 276 ---------------------------------~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldM 322 (944)
T KOG1866|consen 276 ---------------------------------VDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDM 322 (944)
T ss_pred ---------------------------------hHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcC
Confidence 8889999999999999999999999974 678999999999999999
Q ss_pred CcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCC
Q 008156 385 FPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESI 464 (576)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (576)
.||...+.... +. ++... +
T Consensus 323 ePYtvsg~a~~-------------e~---------------------------~~~~~--g------------------- 341 (944)
T KOG1866|consen 323 EPYTVSGVAKL-------------EG---------------------------ENVES--G------------------- 341 (944)
T ss_pred Cceeehhhhhh-------------cc---------------------------ccCCc--C-------------------
Confidence 99997764110 00 00000 0
Q ss_pred CCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCce
Q 008156 465 LPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHW 544 (576)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W 544 (576)
+..+ ....+.+|+|+|||+|.|.+.+|||++||+.++. ..+++|
T Consensus 342 ---~~~e----------------------~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~-----------~~~~kW 385 (944)
T KOG1866|consen 342 ---QQLE----------------------QSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRG-----------EDGNKW 385 (944)
T ss_pred ---cccc----------------------cccCcceeEEEEEEEecccccCcchhhhhhhhcc-----------CCCCce
Confidence 0000 1124558999999999999999999999997643 356999
Q ss_pred EEEeCCceeeechhhhccC--------------------ceEEEEEEeccC
Q 008156 545 FCISDSQVYSVSVNDVLAA--------------------EASLLFYERIIE 575 (576)
Q Consensus 545 ~~~nD~~V~~v~~~~v~~~--------------------~aYlLfY~rv~~ 575 (576)
|+|||-.|++++..++... +||||||+|+++
T Consensus 386 ykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d 436 (944)
T KOG1866|consen 386 YKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDD 436 (944)
T ss_pred EeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcC
Confidence 9999999999988776532 299999999875
No 20
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-47 Score=375.36 Aligned_cols=226 Identities=40% Similarity=0.682 Sum_probs=197.2
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhhc
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQN 155 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~~ 155 (576)
||.|.|||||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999998
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEec
Q 008156 156 FNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQ 235 (576)
Q Consensus 156 f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~ 235 (576)
.||||+||+.+||+.|+.. +.++|.|.+.++++|.
T Consensus 21 ----~QqDa~Ef~~~ll~~l~~~-----------------------------------------i~~~F~~~~~~~~~C~ 55 (230)
T cd02674 21 ----DQQDAQEFLLFLLDGLHSI-----------------------------------------IVDLFQGQLKSRLTCL 55 (230)
T ss_pred ----hhhhHHHHHHHHHHHHhhh-----------------------------------------HHheeCCEEeCcEEcC
Confidence 8999999999999999811 5679999999999999
Q ss_pred CCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHHHHHH
Q 008156 236 SCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEMEIEEL 312 (576)
Q Consensus 236 ~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~~~~~ 312 (576)
.|++ .+.+.|+|+.|+|+++.... .....+|+++|+.|+.+|.+++ +.|++|+..
T Consensus 56 ~C~~-~~~~~e~~~~l~l~ip~~~~--~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~------------------- 113 (230)
T cd02674 56 TCGK-TSTTFEPFTYLSLPIPSGSG--DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKK------------------- 113 (230)
T ss_pred CCcC-CcceecceeEEEEecccccC--CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCc-------------------
Confidence 9996 68889999999996544321 1345699999999999998875 899999987
Q ss_pred HHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeecc-ccccCcCccCC
Q 008156 313 RRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPL-ILDLFPFVKSG 391 (576)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~ 391 (576)
+.+.++..|.++|++|+|||+||.++. +...|+..+|.||. .||+.+|+...
T Consensus 114 --------------------------~~~~~~~~i~~lP~iLii~l~R~~~~~-~~~~K~~~~v~~~~~~l~l~~~~~~~ 166 (230)
T cd02674 114 --------------------------RKATKKLTISRLPKVLIIHLKRFSFSR-GSTRKLTTPVTFPLNDLDLTPYVDTR 166 (230)
T ss_pred --------------------------cceEEEEEEecCChhhEeEhhheecCC-CCcccCCceEeccccccccccccCcc
Confidence 889999999999999999999999987 55789999999996 59998886211
Q ss_pred CCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCC
Q 008156 392 VGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSG 471 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (576)
T Consensus 167 -------------------------------------------------------------------------------- 166 (230)
T cd02674 167 -------------------------------------------------------------------------------- 166 (230)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCc
Q 008156 472 SNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQ 551 (576)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~ 551 (576)
.......|+|+|||+|.|..++|||+||+|.. .++.|++|||+.
T Consensus 167 ----------------------~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~--------------~~~~W~~fnD~~ 210 (230)
T cd02674 167 ----------------------SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNN--------------ETNDWYKFDDSR 210 (230)
T ss_pred ----------------------cCCCCceEEEEEEEEeeCCCCCcEEEEEEECC--------------CCCceEEEcCCe
Confidence 11244579999999999999999999999963 358999999999
Q ss_pred eeeechhhhccCceEEEEEE
Q 008156 552 VYSVSVNDVLAAEASLLFYE 571 (576)
Q Consensus 552 V~~v~~~~v~~~~aYlLfY~ 571 (576)
|++++.+++....||||||+
T Consensus 211 V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 211 VTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred EEEcCHHHccCCCceEEEeC
Confidence 99999999988889999996
No 21
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-47 Score=365.34 Aligned_cols=220 Identities=25% Similarity=0.348 Sum_probs=182.1
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhhc
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQN 155 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~~ 155 (576)
||.|.|||||+|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEec
Q 008156 156 FNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQ 235 (576)
Q Consensus 156 f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~ 235 (576)
.||||+|||+.||+.|++++......... .+...+.|.++|.|++.+++.|
T Consensus 21 ----~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~------------------------~~~~~~~i~~lF~G~~~~~~~~- 71 (228)
T cd02665 21 ----QQQDVSEFTHLLLDWLEDAFQAAAEAISP------------------------GEKSKNPMVQLFYGTFLTEGVL- 71 (228)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhccccccccc------------------------cccccchHhhceEEEEEEEEEE-
Confidence 89999999999999999998753211000 0011234788999999987777
Q ss_pred CCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHHHHh
Q 008156 236 SCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRRC 315 (576)
Q Consensus 236 ~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~ 315 (576)
|+. .+.+.|+|++|+|++ ....+|++||+.|+..|.+++..|.+|
T Consensus 72 -~~~-~s~~~E~F~~L~l~i--------~~~~~L~e~L~~~~~ee~l~~~~~~~~------------------------- 116 (228)
T cd02665 72 -EGK-PFCNCETFGQYPLQV--------NGYGNLHECLEAAMFEGEVELLPSDHS------------------------- 116 (228)
T ss_pred -CCC-cccccCccEEEEEEE--------CCCCCHHHHHHHhhhhcccccccccch-------------------------
Confidence 664 588999999999943 334599999999999999987555432
Q ss_pred hccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCCCC
Q 008156 316 SAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGIN 395 (576)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~ 395 (576)
..+.++..|.+||+||+|||+||.|+. +...|+.++|.||..| ..
T Consensus 117 -----------------------~~~~~~~~i~~lP~vL~i~LkRF~~~~-~~~~Ki~~~v~FP~~l-------~~---- 161 (228)
T cd02665 117 -----------------------VKSGQERWFTELPPVLTFELSRFEFNQ-GRPEKIHDKLEFPQII-------QQ---- 161 (228)
T ss_pred -----------------------hhhhhhhhhhhCChhhEEEeEeeEEcC-CccEECCEEEEeeCcc-------CC----
Confidence 446677889999999999999999987 5679999999999987 00
Q ss_pred CchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCCcc
Q 008156 396 DLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNVR 475 (576)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (576)
T Consensus 162 -------------------------------------------------------------------------------- 161 (228)
T cd02665 162 -------------------------------------------------------------------------------- 161 (228)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeee
Q 008156 476 GRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSV 555 (576)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v 555 (576)
..|+|+|||+|.|++++|||+||+|.. .+++||+|||+.|+++
T Consensus 162 -----------------------~~Y~L~aVi~H~G~~~~GHY~~~i~~~--------------~~~~W~~fdD~~V~~~ 204 (228)
T cd02665 162 -----------------------VPYELHAVLVHEGQANAGHYWAYIYKQ--------------SRQEWEKYNDISVTES 204 (228)
T ss_pred -----------------------ceeEEEEEEEecCCCCCCEEEEEEEcC--------------CCCEEEEEECCeeEEc
Confidence 159999999999999999999999953 4789999999999999
Q ss_pred chhhhccC--------ceEEEEEE
Q 008156 556 SVNDVLAA--------EASLLFYE 571 (576)
Q Consensus 556 ~~~~v~~~--------~aYlLfY~ 571 (576)
+.++|+.. .||||||.
T Consensus 205 ~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 205 SWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred CHHHHhhhccCCCCCCceEEEEEC
Confidence 99999753 59999994
No 22
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-48 Score=403.46 Aligned_cols=309 Identities=21% Similarity=0.298 Sum_probs=260.9
Q ss_pred ccchhhhhhhhccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCc
Q 008156 59 SWLSEKENRLEKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRL 138 (576)
Q Consensus 59 ~~~~~~~~~~~~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~ 138 (576)
-|.+....-++...+.+||+|.|.||||||.||+|+.+..||+.+..++..... +...+..+|+++|..|+... .
T Consensus 178 LWHsF~nYnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~--grdSValaLQr~Fynlq~~~---~ 252 (1089)
T COG5077 178 LWHSFLNYNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR--GRDSVALALQRLFYNLQTGE---E 252 (1089)
T ss_pred eeecccccccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCC--ccchHHHHHHHHHHHHhccC---C
Confidence 466655544666779999999999999999999999999999999998765433 45678899999999997543 6
Q ss_pred eeChHHHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhh
Q 008156 139 VLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRK 218 (576)
Q Consensus 139 ~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (576)
+++..+|...+++ ..+...+|||.|||-+.|+|.|+..++.... ..
T Consensus 253 PvdTteltrsfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~V--------------------------------En 298 (1089)
T COG5077 253 PVDTTELTRSFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV--------------------------------EN 298 (1089)
T ss_pred CcchHHhhhhcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCChh--------------------------------hh
Confidence 9999999888887 4566779999999999999999987654221 11
Q ss_pred cccccccceeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhh
Q 008156 219 HFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAA 295 (576)
Q Consensus 219 ~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~ 295 (576)
.+..+|-|++.+.+.|..-.+ .|.+.|.||+++|+. ...-+|+++++.|.+.|.++| |.|++-+.
T Consensus 299 aln~ifVgkmksyikCvnvny-EsarvedfwdiqlNv--------K~~knLqeSfr~yIqvE~l~GdN~Y~ae~~Gl--- 366 (1089)
T COG5077 299 ALNGIFVGKMKSYIKCVNVNY-ESARVEDFWDIQLNV--------KGMKNLQESFRRYIQVETLDGDNRYNAEKHGL--- 366 (1089)
T ss_pred HHhHHHHHHhhceeeEEEech-hhhhHHHHHHHHhcc--------cchhhHHHHHHHhhhheeccCCcccccccccc---
Confidence 277899999999999999997 699999999999943 344599999999999999998 66666555
Q ss_pred hhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-Cceeeecc
Q 008156 296 IKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWG 374 (576)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~ 374 (576)
+.|.|...+.+||++|.+|||||.||-. +++.||++
T Consensus 367 -------------------------------------------qdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKIND 403 (1089)
T COG5077 367 -------------------------------------------QDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKIND 403 (1089)
T ss_pred -------------------------------------------hhhccceeeccCchHHHHHHHHhccccccCceeeecc
Confidence 8899999999999999999999999964 78899999
Q ss_pred ceeeccccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCcc
Q 008156 375 HIAFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTA 454 (576)
Q Consensus 375 ~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (576)
+.+||+++||.+|.+..+..
T Consensus 404 ryEFP~eiDl~pfld~da~k------------------------------------------------------------ 423 (1089)
T COG5077 404 RYEFPLEIDLLPFLDRDADK------------------------------------------------------------ 423 (1089)
T ss_pred cccCcchhccccccCchhhh------------------------------------------------------------
Confidence 99999999999999664310
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCC
Q 008156 455 HEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPN 534 (576)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~ 534 (576)
..+....|.|+||++|.|..+.|||+|++|
T Consensus 424 ---------------------------------------sen~d~vY~LygVlVHsGDl~~GHyYallK----------- 453 (1089)
T COG5077 424 ---------------------------------------SENSDAVYVLYGVLVHSGDLHEGHYYALLK----------- 453 (1089)
T ss_pred ---------------------------------------hcccCcEEEEEEEEEeccccCCceEEEEec-----------
Confidence 011225899999999999999999999999
Q ss_pred CCCCCCCCceEEEeCCceeeechhhhccCc----------------------eEEEEEEecc
Q 008156 535 EHFETPLTHWFCISDSQVYSVSVNDVLAAE----------------------ASLLFYERII 574 (576)
Q Consensus 535 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~----------------------aYlLfY~rv~ 574 (576)
+..+++||+|||++|++++..+|+..+ ||||+|-|.+
T Consensus 454 ---pe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks 512 (1089)
T COG5077 454 ---PEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKS 512 (1089)
T ss_pred ---cccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHh
Confidence 357899999999999999999998643 8999998864
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.1e-45 Score=369.11 Aligned_cols=259 Identities=31% Similarity=0.471 Sum_probs=203.7
Q ss_pred CCCcccCCCchhhHHHHHHHhccchhHHHHHhh-----hccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHH
Q 008156 74 VPGLQNLGNNCFLNVILQALASCTCFLPFLQKV-----MGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLA 148 (576)
Q Consensus 74 ~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~-----~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~ 148 (576)
|+||.|.||||||||+||+|+++|+|+++|.+. ............++.+|+.||..|+........+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 689999999999999999999999999999975 112222334567999999999999876456789999999999
Q ss_pred HHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhccccccccee
Q 008156 149 MELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGIL 228 (576)
Q Consensus 149 l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~ 228 (576)
++...+.|..+.||||+|||..||+.|++++...... ...........+.+..+|.+.+
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~f~~~~ 139 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKR---------------------KSWKNTNSSEDSLISDLFGGQF 139 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSH---------------------HHHHHHHCCEESHHHHHH-EEE
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccc---------------------cccccccccccccccccccccc
Confidence 9999999999999999999999999999998653220 0000001111223567899999
Q ss_pred eceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHH
Q 008156 229 GSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEME 308 (576)
Q Consensus 229 ~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~ 308 (576)
...+.|..|+..
T Consensus 140 ~~~~~c~~c~~~-------------------------------------------------------------------- 151 (269)
T PF00443_consen 140 ESSIKCSSCKNS-------------------------------------------------------------------- 151 (269)
T ss_dssp EEEEEETTTTCE--------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 999999999851
Q ss_pred HHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-Cceeeeccceeec-cccccCc
Q 008156 309 IEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFP-LILDLFP 386 (576)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP-~~Ldl~~ 386 (576)
...|.++|+||+|||+||.|+.. +...|+..+|.|| ..|||.+
T Consensus 152 -----------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~ 196 (269)
T PF00443_consen 152 -----------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSP 196 (269)
T ss_dssp -----------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGG
T ss_pred -----------------------------------ccccccccceeeeccccceeccccccccccccccccCchhhhhhh
Confidence 14789999999999999999875 5689999999999 6999999
Q ss_pred CccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCC
Q 008156 387 FVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILP 466 (576)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (576)
++.....
T Consensus 197 ~~~~~~~------------------------------------------------------------------------- 203 (269)
T PF00443_consen 197 YLEKNNS------------------------------------------------------------------------- 203 (269)
T ss_dssp GBSSCCC-------------------------------------------------------------------------
T ss_pred hhccccc-------------------------------------------------------------------------
Confidence 8854310
Q ss_pred CCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEE
Q 008156 467 PTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFC 546 (576)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~ 546 (576)
.......|+|+|||+|.|+.++|||+||||.. ..++|++
T Consensus 204 ---------------------------~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~--------------~~~~W~~ 242 (269)
T PF00443_consen 204 ---------------------------ECQSNVKYRLVAVIVHYGSADSGHYVAYVRDS--------------DDGKWYK 242 (269)
T ss_dssp ---------------------------THTSSSEEEEEEEEEEESSTTSEEEEEEEEET--------------TTTEEEE
T ss_pred ---------------------------cccccceeeehhhhccccccccceEEEeeccc--------------cCCeEEE
Confidence 00124589999999999999999999999973 4456999
Q ss_pred EeCCceeeechhhhcc---CceEEEEE
Q 008156 547 ISDSQVYSVSVNDVLA---AEASLLFY 570 (576)
Q Consensus 547 ~nD~~V~~v~~~~v~~---~~aYlLfY 570 (576)
|||+.|+++++++|.+ ..||||||
T Consensus 243 ~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 243 FDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred eeCCceEECCHHHHhhccCCceEEEeC
Confidence 9999999999999998 78999999
No 24
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-48 Score=402.27 Aligned_cols=376 Identities=30% Similarity=0.411 Sum_probs=266.0
Q ss_pred hccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCC-----------------CCCCChHHHHHHHHHHHHH
Q 008156 69 EKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEE-----------------PDEDLPLTVALASLLEELC 131 (576)
Q Consensus 69 ~~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~-----------------~~~~~~l~~~L~~L~~~l~ 131 (576)
+.+...+||.|||||||+|||+|+|+.+|.|++.|......... +....+++.+|..|.....
T Consensus 200 ~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e 279 (877)
T KOG1873|consen 200 RRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSE 279 (877)
T ss_pred cccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhh
Confidence 33557899999999999999999999999999999887655311 1256788888888554443
Q ss_pred hcCCCCceeChHHHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCC-CCchhhhh--h------hhhhhhh
Q 008156 132 LVGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPN-ESSLVDAF--E------AASCRIL 202 (576)
Q Consensus 132 ~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~-~~~~~~~~--~------~~~~~~~ 202 (576)
.....++|+.|+..+....|+|.++.||||||+|++|||.|..|.....++. ...+.... . ....+++
T Consensus 280 ---~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvY 356 (877)
T KOG1873|consen 280 ---TTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVY 356 (877)
T ss_pred ---ccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcc
Confidence 3457999999999999999999999999999999999999987654432211 00000000 0 0001111
Q ss_pred chhhhhhhHHhhhhhhcccccccceeeceEEecCCCCcccccccccceeecccCCCCCCCC-------------------
Q 008156 203 SLKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTI------------------- 263 (576)
Q Consensus 203 ~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~------------------- 263 (576)
.+. ....-.....|.|.+.+++.|..|. .+...+.|.+.++++.+....+.
T Consensus 357 e~f--------~~~~~~vp~~~~~~~~s~~~~~~~~--vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~sp 426 (877)
T KOG1873|consen 357 EPF--------KDLSLPVPLSFNGPLTSQIECQACD--VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSP 426 (877)
T ss_pred ccc--------ccCCcccccccCCCcccchhhhccc--eeccchhhcccccccccCccccccCCCcccceeccccccCCc
Confidence 110 0011113467999999999999999 58889999998887544311110
Q ss_pred --------------------------------------------------------------------------------
Q 008156 264 -------------------------------------------------------------------------------- 263 (576)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (576)
T Consensus 427 st~~~t~n~~~~e~~~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD 506 (877)
T KOG1873|consen 427 STEAPTKNLPSSELLDSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGD 506 (877)
T ss_pred cccCcccCcccccccccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008156 264 -------------------------------------------------------------------------------- 263 (576)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (576)
T Consensus 507 ~e~s~Ad~~lde~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~ 586 (877)
T KOG1873|consen 507 GELSKADMSLDEANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSR 586 (877)
T ss_pred ccccccccccccccccccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008156 264 -------------------------------------------------------------------------------- 263 (576)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (576)
T Consensus 587 sp~~se~~~vs~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s 666 (877)
T KOG1873|consen 587 SPKKSEVKIVSGNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSIS 666 (877)
T ss_pred CCcccceeeeccccccccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCcccccccc
Confidence
Q ss_pred --------CCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHHHHHHHHhhccCccccccccccCCC
Q 008156 264 --------PFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETL 332 (576)
Q Consensus 264 --------~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (576)
...++++.||.+|++.|.+.| +.|+.|........ +-+ +.++.+..+ . ...|.
T Consensus 667 ~~~~~~~~D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~-r~k-----------~~~n~~~sk-~--s~~es- 730 (877)
T KOG1873|consen 667 DPEVLDSSDEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQR-REK-----------RGLNEDNSK-Y--SFNES- 730 (877)
T ss_pred ChhhccCCCCCccHHHHHHhhhhhhhcccccchhhhhhhccccccc-hhh-----------ccCCCCccc-c--cccch-
Confidence 346899999999999999976 99999986411110 000 001101000 0 00001
Q ss_pred CCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCCCCCchhHHhhhhhccccCC
Q 008156 333 PWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNER 412 (576)
Q Consensus 333 ~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (576)
-.++..|.|+..|..+||||+|||+||+-+..++..|.+.+|.|++.+||.+|+...- .
T Consensus 731 --~~~~t~akk~~li~~aPpVltihlKrf~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc------------~------- 789 (877)
T KOG1873|consen 731 --EYRNTYAKKKVLINKAPPVLTIHLKRFFQDIRGRLSKLNKHVDFKEFEDLLDYMDFRC------------S------- 789 (877)
T ss_pred --hhhhhhhheeeecccCCceeeehHhhhhhhhhchhhcccccchHHHHHHHHHHhhhhc------------c-------
Confidence 1112457999999999999999999999887788899999999999999999983310 0
Q ss_pred CCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccC
Q 008156 413 PSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQ 492 (576)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (576)
+.
T Consensus 790 ----------------------------------------------------------------------~l-------- 791 (877)
T KOG1873|consen 790 ----------------------------------------------------------------------HL-------- 791 (877)
T ss_pred ----------------------------------------------------------------------cc--------
Confidence 00
Q ss_pred CCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccC----CCCCCCCC--CCCCCCceEEEeCCceeeechhhhccCceE
Q 008156 493 LCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVES----HEENPNEH--FETPLTHWFCISDSQVYSVSVNDVLAAEAS 566 (576)
Q Consensus 493 ~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~----~~~~~~~~--~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY 566 (576)
....+..|+|.|||.|.|+..+|||++|+|....- +.+..+.. .....++||.++|..|.+|++++|++.+||
T Consensus 792 -~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAY 870 (877)
T KOG1873|consen 792 -DEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAY 870 (877)
T ss_pred -CCcchhhhhhccceeccccccCCcchhhhhccchhhccCccccccchhccCCCCcceEEecchheecccHHHHhhhhhh
Confidence 01134579999999999999999999999976432 11111111 225789999999999999999999999999
Q ss_pred EEEEEec
Q 008156 567 LLFYERI 573 (576)
Q Consensus 567 lLfY~rv 573 (576)
|||||||
T Consensus 871 lLFYERI 877 (877)
T KOG1873|consen 871 LLFYERI 877 (877)
T ss_pred hhheecC
Confidence 9999997
No 25
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-46 Score=396.36 Aligned_cols=320 Identities=33% Similarity=0.443 Sum_probs=264.9
Q ss_pred CCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCC-CChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 72 CLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDE-DLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 72 ~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~-~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
.+++||.|+|||||||++||+|.+.+..+...+...+.+..... ..++.+++.++|..+++..+ ..+++|..+++.++
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~-~~~~sp~~~l~~~~ 237 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHN-RTPYSPFELLNLVW 237 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCC-CCCcChHHHHHHHH
Confidence 47899999999999999999999999888877776666544443 78999999999999986442 78999999999999
Q ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeec
Q 008156 151 LYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGS 230 (576)
Q Consensus 151 ~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s 230 (576)
+..+.+.++.|||||||+..+++.++.+.....+... .. . . ...-...+..+|.|.+.+
T Consensus 238 k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~---~~------------~-~-----~~~c~~iv~~~F~G~L~~ 296 (492)
T KOG1867|consen 238 KHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLI---AS------------Q-S-----NKQCPCIVHTIFSGTLQS 296 (492)
T ss_pred HhCcccccccccchHHHHHHhcccccccccccccccc---cc------------c-C-----Ccccccccceeecceecc
Confidence 9999999999999999999999999988721111000 00 0 0 001233477899999999
Q ss_pred eEEecCCCCcccccccccceeecccCCCCCCCCCC--CCCHHHHHhhhcCeeecc---ccccCCcchhhhhhhhcccccc
Q 008156 231 ILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPF--GCTLEDCLKQFLTAEQLE---NYHCSHCWHIAAIKYLSITEAN 305 (576)
Q Consensus 231 ~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~--~~sL~~~L~~~~~~E~i~---~~~C~~C~~~~~~~~l~~~~~~ 305 (576)
.++|..|+. .+..+++|++|+|+++......... ..++.+|++.|...+... ++.|..|+..
T Consensus 297 ~v~c~~c~~-~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~------------ 363 (492)
T KOG1867|consen 297 DVTCQTCGS-KSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSK------------ 363 (492)
T ss_pred ceeehhhcc-eeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccc------------
Confidence 999999996 6799999999999876554333322 368999999999888753 5999999987
Q ss_pred HHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccC
Q 008156 306 EMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLF 385 (576)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~ 385 (576)
+.++|+..|.++|.+|++|++||.|...+...|++..|.||..|++.
T Consensus 364 ---------------------------------~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~ 410 (492)
T KOG1867|consen 364 ---------------------------------QESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMK 410 (492)
T ss_pred ---------------------------------cccccccccccCCceeeeeeccccccccccccccCcccccchhhcCC
Confidence 89999999999999999999999998876556999999999999999
Q ss_pred cCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCC
Q 008156 386 PFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESIL 465 (576)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (576)
+|+..+....
T Consensus 411 p~~~~~~~~~---------------------------------------------------------------------- 420 (492)
T KOG1867|consen 411 PYCSSEKLKS---------------------------------------------------------------------- 420 (492)
T ss_pred cccccccccc----------------------------------------------------------------------
Confidence 9996521000
Q ss_pred CCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceE
Q 008156 466 PPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWF 545 (576)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~ 545 (576)
.+.+...|+|+|||+|+|..++|||+||+|. .+.||
T Consensus 421 ----------------------------~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~----------------~~~~~ 456 (492)
T KOG1867|consen 421 ----------------------------QDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ----------------SGGWF 456 (492)
T ss_pred ----------------------------CCCCCceEEEEEEEEeccCCCCCceEEEEEe----------------CCCcE
Confidence 0124568999999999999999999999994 78999
Q ss_pred EEeCCceeeechhhhccCceEEEEEEec
Q 008156 546 CISDSQVYSVSVNDVLAAEASLLFYERI 573 (576)
Q Consensus 546 ~~nD~~V~~v~~~~v~~~~aYlLfY~rv 573 (576)
+|||+.|+.++.++|++..||+|||.+.
T Consensus 457 ~~dDs~v~~~s~~eVl~~~aylLFY~~~ 484 (492)
T KOG1867|consen 457 KCDDSTVTKVSEEEVLSSQAYLLFYTQE 484 (492)
T ss_pred EEcCeEEEEeeHHHhhhchhhheehhHH
Confidence 9999999999999999999999999874
No 26
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-46 Score=382.62 Aligned_cols=313 Identities=20% Similarity=0.213 Sum_probs=211.1
Q ss_pred CCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCC-------------CC-------CCCChHHHHHHHHHHHHHhc
Q 008156 74 VPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECE-------------EP-------DEDLPLTVALASLLEELCLV 133 (576)
Q Consensus 74 ~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~-------------~~-------~~~~~l~~~L~~L~~~l~~~ 133 (576)
|+||.|+||||||||+||+|+++|+||++++.+..... .. ....+++.+|+.||..|+.
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~- 79 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIH- 79 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHh-
Confidence 79999999999999999999999999999998753211 00 0123699999999999974
Q ss_pred CCCCceeChHHHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHh
Q 008156 134 GETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQ 213 (576)
Q Consensus 134 ~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (576)
+....++|..++..++. .||||+|||..||+.|+.+++........+ ......+.
T Consensus 80 -s~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~----------------~~~~~~~~ 134 (343)
T cd02666 80 -SNTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGP----------------DTEDDKEQ 134 (343)
T ss_pred -CCCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCc----------------ccccccch
Confidence 55578999999887653 899999999999999999987543211000 00000111
Q ss_pred hhhhhcccccccceeeceEEecCCC--CcccccccccceeecccCCCCC--CCCCCCCCHHHHHhhhcCeeeccccccCC
Q 008156 214 KRWRKHFFGPFDGILGSILTCQSCL--SQISLDYQFFHSLPLSPVLDSG--STIPFGCTLEDCLKQFLTAEQLENYHCSH 289 (576)
Q Consensus 214 ~~~~~~i~~~F~g~~~s~i~C~~C~--~~~s~~~e~f~~LsL~~~~~~~--~~~~~~~sL~~~L~~~~~~E~i~~~~C~~ 289 (576)
.+.|.++|.|++.+.++|..|+ ...+.+.|+|++|+|++..... .......+|.+||+.|+..|.
T Consensus 135 ---~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-------- 203 (343)
T cd02666 135 ---SDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-------- 203 (343)
T ss_pred ---hhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh--------
Confidence 2337889999999999999996 2368999999999997653111 111135699999999997652
Q ss_pred cchhhhhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCce
Q 008156 290 CWHIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGEL 369 (576)
Q Consensus 290 C~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~ 369 (576)
|.+||++|.|||+
T Consensus 204 ---------------------------------------------------------~~~~P~vl~~qlq---------- 216 (343)
T cd02666 204 ---------------------------------------------------------LTKLPQRSQVQAQ---------- 216 (343)
T ss_pred ---------------------------------------------------------hccCCHHHHHHHh----------
Confidence 7899999999999
Q ss_pred eeeccceeeccccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccc
Q 008156 370 VKIWGHIAFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDE 449 (576)
Q Consensus 370 ~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (576)
..++.|++.+++.+|-.+...... ....+....... ..+.. .+...+....
T Consensus 217 ---~~~~~~~~~~~~dry~~~~~~~~~--~~l~~~~~~~~~----~~~~~--~~~~~~~l~~------------------ 267 (343)
T cd02666 217 ---LAQPLQRELISMDRYELPSSIDDI--DELIREAIQSES----SLVRQ--AQNELAELKH------------------ 267 (343)
T ss_pred ---hcccccchheeeccccccchHHHH--HHHHHHHHHHHH----HHHHH--HHHHHHHHHH------------------
Confidence 334555555555555221110000 000000000000 00000 0000000000
Q ss_pred cCCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCC
Q 008156 450 LGCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESH 529 (576)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~ 529 (576)
..+..........|+|+|||+|.|.+++|||++|+|..
T Consensus 268 --------------------------------------~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~---- 305 (343)
T cd02666 268 --------------------------------------EIEKQFDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDF---- 305 (343)
T ss_pred --------------------------------------HHHHhhcccCCCceEEEEEEEeecCCCCCeEEEEEEEC----
Confidence 00000012355689999999999999999999999964
Q ss_pred CCCCCCCCCCCCCceEEEeCCceeeechhhhccC------ceEEEEEE
Q 008156 530 EENPNEHFETPLTHWFCISDSQVYSVSVNDVLAA------EASLLFYE 571 (576)
Q Consensus 530 ~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~------~aYlLfY~ 571 (576)
.++.||+|||+.|++++.++|+.. +||||+|.
T Consensus 306 ----------~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 306 ----------EENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred ----------CCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 458999999999999999999864 59999994
No 27
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-45 Score=355.61 Aligned_cols=240 Identities=25% Similarity=0.324 Sum_probs=182.7
Q ss_pred cccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhhcc
Q 008156 77 LQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQNF 156 (576)
Q Consensus 77 L~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~~f 156 (576)
|.|.||.||+||.+|+|.++ ++.++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i-----------------------------------------------------~~~~~~F 28 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI-----------------------------------------------------GKINTEF 28 (245)
T ss_pred ceecCCeeeehhHHHHHHHH-----------------------------------------------------hhhhhhc
Confidence 78999999999999998532 1224789
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEecC
Q 008156 157 NLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQS 236 (576)
Q Consensus 157 ~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~~ 236 (576)
.+++||||||||.+||+.|++++............ +...+ ....+|.|.+.+.++|..
T Consensus 29 ~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~--------------------~~~~~--~~~~~F~~~l~s~i~C~~ 86 (245)
T cd02673 29 DNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNI--------------------EIKRL--NPLEAFKYTIESSYVCIG 86 (245)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcc--------------------ccccc--CHhHheeeEEEeEEEecC
Confidence 99999999999999999999987543111000000 00000 123579999999999999
Q ss_pred CCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHHHHhh
Q 008156 237 CLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRRCS 316 (576)
Q Consensus 237 C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~~ 316 (576)
|++ .+.+.|+|++|+|+++.. ...+++++++.|...+.++ +.|++|+.
T Consensus 87 C~~-~s~~~e~~~~L~L~i~~~------~~~~le~l~~~~~~~~~~e-~~C~~C~~------------------------ 134 (245)
T cd02673 87 CSF-EENVSDVGNFLDVSMIDN------KLDIDELLISNFKTWSPIE-KDCSSCKC------------------------ 134 (245)
T ss_pred CCC-eeeeccccceeccccccC------CcchHHHHHHHhhcccccC-ccCCCCCC------------------------
Confidence 996 788999999999965432 1347899999999888886 89999996
Q ss_pred ccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCCCCC
Q 008156 317 AQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGIND 396 (576)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~ 396 (576)
..+.|+.+|.++|+||+|||+||.|+.. +...+.+. .+++.+|+.
T Consensus 135 ----------------------~~a~k~~~i~~~P~vL~i~lkRf~~~~~-----~~~~~~~~-~~~~~~~~~------- 179 (245)
T cd02673 135 ----------------------ESAISSERIMTFPECLSINLKRYKLRIA-----TSDYLKKN-EEIMKKYCG------- 179 (245)
T ss_pred ----------------------ccceeechhhhCChhhEEeeEeeeeccc-----cccccccc-ccccccccC-------
Confidence 5677888999999999999999987532 11111111 234444441
Q ss_pred chhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCCccC
Q 008156 397 LDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNVRG 476 (576)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (576)
T Consensus 180 -------------------------------------------------------------------------------- 179 (245)
T cd02673 180 -------------------------------------------------------------------------------- 179 (245)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeee
Q 008156 477 RDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSV 555 (576)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v 555 (576)
....|+|+|||+|.|. .++|||+||+|.. ..+++||+|||+.|+++
T Consensus 180 --------------------~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~-------------~~~~~Wy~fnD~~V~~v 226 (245)
T cd02673 180 --------------------TDAKYSLVAVICHLGESPYDGHYIAYTKEL-------------YNGSSWLYCSDDEIRPV 226 (245)
T ss_pred --------------------CCceEEEEEEEEECCCCCCCceEEEEEEcC-------------CCCCeEEEeeCceeeEc
Confidence 1236999999999998 8999999999963 12689999999999999
Q ss_pred chhhhc---cCceEEEEEE
Q 008156 556 SVNDVL---AAEASLLFYE 571 (576)
Q Consensus 556 ~~~~v~---~~~aYlLfY~ 571 (576)
++++|+ ...||||||+
T Consensus 227 ~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 227 SKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred CHHHHhhccCCceEEEEEC
Confidence 999998 4689999996
No 28
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-43 Score=349.67 Aligned_cols=395 Identities=18% Similarity=0.229 Sum_probs=261.0
Q ss_pred CCCcccCCCchhhHHHHHHHhccchhHHHHHhhhc--cCCCCCCCChHHHHHHHHHHHHHhcCC--CCceeChHHHHHHH
Q 008156 74 VPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMG--ECEEPDEDLPLTVALASLLEELCLVGE--TRLVLSPQKVMLAM 149 (576)
Q Consensus 74 ~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~--~~~~~~~~~~l~~~L~~L~~~l~~~~~--~~~~i~p~~~~~~l 149 (576)
.+||.|+||+||+|||+|.|++...+..-+....+ .+....+..+|.++|.+|+..|....+ ....|+|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 88999999999999999999998888665544332 233345788999999999998865332 34579999999999
Q ss_pred HHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceee
Q 008156 150 ELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILG 229 (576)
Q Consensus 150 ~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~ 229 (576)
++.++.|...+||||+|||.+||+.|.+.+.... ...|.++|...+.
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~---------------------------------~~~It~lf~Fe~e 429 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYL---------------------------------IPPITSLFEFEVE 429 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccchhc---------------------------------CCCcchhhhhhhc
Confidence 9999999999999999999999999988654332 2237889999999
Q ss_pred ceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHH
Q 008156 230 SILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEI 309 (576)
Q Consensus 230 s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~ 309 (576)
.++.|..|+. .+..+++...+.+.. ... -...++.++++.||.+.+++ |.|+.|+.+
T Consensus 430 ~rlsC~~C~~-v~ySye~~~~i~i~l-e~n----~E~~di~~~v~a~f~pdtiE-~~CenCk~K---------------- 486 (749)
T COG5207 430 RRLSCSGCMD-VSYSYESMLMICIFL-EGN----DEPQDIRKSVEAFFLPDTIE-WSCENCKGK---------------- 486 (749)
T ss_pred ceeccccccc-ccccccceEEEEeec-ccC----cchhhHHHHHHheECcccee-eehhhhcCc----------------
Confidence 9999999995 789999998888732 222 23458999999999999999 999999987
Q ss_pred HHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccc--cccCcC
Q 008156 310 EELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLI--LDLFPF 387 (576)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~--Ldl~~~ 387 (576)
..|.++..|.+||+|||++..||.+. .+...|+..++.+... ++++.|
T Consensus 487 -----------------------------~~a~~k~~~kslPk~LIlq~~R~~lq-ny~v~kls~pi~~~~D~m~~~~s~ 536 (749)
T COG5207 487 -----------------------------KKASRKPFIKSLPKYLILQVGRYSLQ-NYKVEKLSDPIEMRSDDMIKLGSF 536 (749)
T ss_pred -----------------------------ccccccchhhccCceeEEecceeecc-ceeehhccCceEEccccccchhhH
Confidence 88999999999999999999999874 3457899998888764 899988
Q ss_pred ccC--CCCCCCchhHHh--hhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCc--cccccccC
Q 008156 388 VKS--GVGINDLDESWQ--RGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCT--AHEKEFRG 461 (576)
Q Consensus 388 ~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 461 (576)
++. ...+...+.+.. .+.+-..... .+.--.+.+...+-.+.|..+ .+++.+.=-.... +-.+++..
T Consensus 537 msk~~PqtEn~LPdedE~~t~Nqs~I~qL----~~mGfp~~~~~rAL~~tgNqD---aEsAMNWLFqHMdDPdlndP~~~ 609 (749)
T COG5207 537 MSKFDPQTENLLPDEDEAFTDNQSLIRQL----VDMGFPEEDAARALGITGNQD---AESAMNWLFQHMDDPDLNDPFVP 609 (749)
T ss_pred hhccCCcccccCCccccccCchHHHHHHH----HHcCCCHHHHHHHHhhccCcc---hHHHHHHHHhhccCcccCCCCCC
Confidence 865 112222222110 0100000000 000000000000001111000 0000000000000 00001111
Q ss_pred CCCCCCCCC----------------------------CCCccCCCcCCCCCccccccc-----------CCCCCCCceEE
Q 008156 462 ESILPPTQS----------------------------GSNVRGRDIQMQPDDEVIGSS-----------QLCQPNTYLYR 502 (576)
Q Consensus 462 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Y~ 502 (576)
..+.|-.+. +...+..++-..+.|..+..+ ++.......|.
T Consensus 610 ~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYa 689 (749)
T COG5207 610 PPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYA 689 (749)
T ss_pred CCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCccc
Confidence 111110000 001111111111111111111 12334455699
Q ss_pred EeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEec
Q 008156 503 LASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERI 573 (576)
Q Consensus 503 L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv 573 (576)
|.|||+|.|+ +.+|||++|||+- ..+.-+|+.|||++|-.++.-++++.++||+||+|.
T Consensus 690 LtAvI~HkG~s~haGHYv~fIrk~------------~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 690 LTAVICHKGDSIHAGHYVWFIRKN------------GKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred ceeEEeccCCcccccceEEEEecc------------cCcceeEEEEccchheehhhHHHHhhCCeEEEEecC
Confidence 9999999999 9999999999974 334568999999999999888999999999999984
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-42 Score=340.00 Aligned_cols=247 Identities=37% Similarity=0.587 Sum_probs=199.4
Q ss_pred CcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhhc
Q 008156 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQN 155 (576)
Q Consensus 76 GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~~ 155 (576)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEec
Q 008156 156 FNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQ 235 (576)
Q Consensus 156 f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C~ 235 (576)
.||||+|||..+|+.|+.++....... .........+..+|.|.+.+.+.|.
T Consensus 21 ----~q~Da~E~l~~ll~~l~~~~~~~~~~~------------------------~~~~~~~~~i~~~F~~~~~~~~~c~ 72 (255)
T cd02257 21 ----EQQDAHEFLLFLLDKLHEELKKSSKRT------------------------SDSSSLKSLIHDLFGGKLESTIVCL 72 (255)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhcccc------------------------cccccCCchhhhhcccEEeeEEECC
Confidence 899999999999999999987532110 0000112237789999999999999
Q ss_pred CCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcc--hhhhhhhhccccccHHHHHHHH
Q 008156 236 SCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCW--HIAAIKYLSITEANEMEIEELR 313 (576)
Q Consensus 236 ~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~--~~~~~~~l~~~~~~~~~~~~~~ 313 (576)
.|+. .+.....+..++|+++.... ...+|+++|+.++..|.+++..|..|+ ..
T Consensus 73 ~c~~-~~~~~~~~~~l~l~~~~~~~----~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~-------------------- 127 (255)
T cd02257 73 ECGH-ESVSTEPELFLSLPLPVKGL----PQVSLEDCLEKFFKEEILEGDNCYKCEKKKK-------------------- 127 (255)
T ss_pred CCCC-CccCcccceeEEeeccCCCC----CCCcHHHHHHHhhhhhccCCCCcccCCCCcc--------------------
Confidence 9985 56665666666664332211 245999999999999999999999998 33
Q ss_pred HhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCC
Q 008156 314 RCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVG 393 (576)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~ 393 (576)
..+.++..|.++|+||+|||+||.++..+...|+..+|.||..|++..++....
T Consensus 128 -------------------------~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~~~~~~~~- 181 (255)
T cd02257 128 -------------------------QEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGE- 181 (255)
T ss_pred -------------------------cceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCcccccccc-
Confidence 889999999999999999999999987666789999999999999999884310
Q ss_pred CCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCC
Q 008156 394 INDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSN 473 (576)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (576)
.
T Consensus 182 ----~--------------------------------------------------------------------------- 182 (255)
T cd02257 182 ----K--------------------------------------------------------------------------- 182 (255)
T ss_pred ----c---------------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCce
Q 008156 474 VRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQV 552 (576)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V 552 (576)
..........|+|+|||+|.|. .++|||+||+|.+ .+++||+|||..|
T Consensus 183 -----------------~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~--------------~~~~W~~~nD~~V 231 (255)
T cd02257 183 -----------------DSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDP--------------SDGKWYKFNDDKV 231 (255)
T ss_pred -----------------cccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCC--------------CCCceEEEecccc
Confidence 0001234457999999999999 6999999999963 3599999999999
Q ss_pred eeechhhhc-----cCceEEEEEE
Q 008156 553 YSVSVNDVL-----AAEASLLFYE 571 (576)
Q Consensus 553 ~~v~~~~v~-----~~~aYlLfY~ 571 (576)
++++.+++. ...||||||+
T Consensus 232 ~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 232 TEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred EEcCHHHhhhccCCCCceEEEEEC
Confidence 999999994 5679999996
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-44 Score=367.15 Aligned_cols=343 Identities=20% Similarity=0.264 Sum_probs=240.8
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
+.+.+||+|...|||+|+.+|+|+..|.|++.+.. +...++....+.+.++
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yt-----------------------------s~~~~~et~dlt~sfg 134 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYT-----------------------------SENDSLETKDLTQSFG 134 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhC-----------------------------CCcccccchhhHhhcC
Confidence 45789999999999999999999999999987662 1112444445555544
Q ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeec
Q 008156 151 LYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGS 230 (576)
Q Consensus 151 ~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s 230 (576)
+. .-.-+.|||.+|+.+.++|+|+..++.... .+.|.+++.|++..
T Consensus 135 w~--s~ea~~qhdiqelcr~mfdalehk~k~t~~--------------------------------~~li~~ly~g~m~d 180 (1203)
T KOG4598|consen 135 WT--SNEAYDQHDVQELCRLMFDALEHKWKGTEH--------------------------------EKLIQDLYRGTMED 180 (1203)
T ss_pred CC--cchhhhhhhHHHHHHHHHHHHHhhhcCchH--------------------------------HHHHHHHhcchHHH
Confidence 42 122369999999999999999988865321 22377899999999
Q ss_pred eEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHH
Q 008156 231 ILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEM 307 (576)
Q Consensus 231 ~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~ 307 (576)
.+.|..|+ +.+.+.+.|++|+|+..|- +.+...-+++++|..|.++|.++| |-|++|+.+
T Consensus 181 ~v~cl~c~-~e~~~~d~fld~pl~v~pf--g~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k-------------- 243 (1203)
T KOG4598|consen 181 FVACLKCG-RESVKTDYFLDLPLAVKPF--GAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSK-------------- 243 (1203)
T ss_pred HHHHHHcC-ccccccceeecccccccCC--cchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhh--------------
Confidence 99999999 5899999999999954432 244556699999999999999997 999999998
Q ss_pred HHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCc-eeeeccceeeccccccCc
Q 008156 308 EIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGE-LVKIWGHIAFPLILDLFP 386 (576)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~-~~Ki~~~V~fP~~Ldl~~ 386 (576)
..|.|..+|..||-+|.||||||.||-..+ +.|++++|+||..|||..
T Consensus 244 -------------------------------~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~ 292 (1203)
T KOG4598|consen 244 -------------------------------QDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLND 292 (1203)
T ss_pred -------------------------------hhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHH
Confidence 999999999999999999999999987543 589999999999999999
Q ss_pred CccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCC
Q 008156 387 FVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILP 466 (576)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (576)
|+..+........ +.+.. ... ...++...+.++....+... ...+|
T Consensus 293 ~in~~~~s~~~~~--~~~~~-----------------------------~~~--~~~~~~~~~~~~~n~~~~~~-~~~s~ 338 (1203)
T KOG4598|consen 293 YVNKEKRSTTSSA--WQQIG-----------------------------KNK--SENEEDDMELGSPNPKRCTP-GVQSP 338 (1203)
T ss_pred hhhhccCCcchhH--hhhcc-----------------------------ccc--ccccccccccCCCCcccCcc-cccCc
Confidence 9955432111111 00000 000 00000001111100000000 00011
Q ss_pred CCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEE
Q 008156 467 PTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFC 546 (576)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~ 546 (576)
++-.++.+......+.+. .............|+|+||.+|.|++.+|||+|||+.. ++++||+
T Consensus 339 ~~~~~~~n~~~g~~~~~~---~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~--------------d~~~w~~ 401 (1203)
T KOG4598|consen 339 NRYQGSENVCVGQPIDHA---AVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNL--------------DQDRWYV 401 (1203)
T ss_pred ccccCccccccCCcCchh---hhhhHhhcCCccHHHhhhhheecCCCCCceeeeeeccc--------------CcCceEE
Confidence 111111111111111110 00001123456789999999999999999999999975 8899999
Q ss_pred EeCCceeeechhhhccC-------------ceEEEEEEeccC
Q 008156 547 ISDSQVYSVSVNDVLAA-------------EASLLFYERIIE 575 (576)
Q Consensus 547 ~nD~~V~~v~~~~v~~~-------------~aYlLfY~rv~~ 575 (576)
|||.+|+.++..+|.+. +||||+|+||+.
T Consensus 402 fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 402 FNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred ecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCc
Confidence 99999999999999753 399999999984
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-40 Score=373.58 Aligned_cols=334 Identities=27% Similarity=0.422 Sum_probs=271.7
Q ss_pred ccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccC-----CCCCCCChHHHHHHHHHHHHHhcCCCCceeChHH
Q 008156 70 KLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC-----EEPDEDLPLTVALASLLEELCLVGETRLVLSPQK 144 (576)
Q Consensus 70 ~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~-----~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~ 144 (576)
...+.+||.|+||||||||.+|||.+.+.++++++...... ...+....+..++..+...+|.... ..+.|..
T Consensus 242 ~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~--~~v~~~~ 319 (842)
T KOG1870|consen 242 SERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNK--SAVAPTS 319 (842)
T ss_pred CcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCc--cccCchh
Confidence 34589999999999999999999999999999987654443 2344667888899999999975332 4899999
Q ss_pred HHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccc
Q 008156 145 VMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPF 224 (576)
Q Consensus 145 ~~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F 224 (576)
+...+....++|.++.|||.+||+.+|+|.||+.+......++....+....+.... .............+.+..+|
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~---~~~~~~~~~~~~~s~i~d~~ 396 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEV---AAEVWDYHLKRNRSVIVDLF 396 (842)
T ss_pred hhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhh---hHHHHHhhhhhccceeeeee
Confidence 999999999999999999999999999999999998876654433333222110000 00111112222234588999
Q ss_pred cceeeceEEecCCCCcccccccccceeecccCCCCCCCC-----------------------------------------
Q 008156 225 DGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTI----------------------------------------- 263 (576)
Q Consensus 225 ~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~----------------------------------------- 263 (576)
.|.+.+.+.|..|+ ..++++++|..|+|+.+.......
T Consensus 397 ~~~~~S~~~c~~C~-~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 475 (842)
T KOG1870|consen 397 DGTYKSTLQCPTCG-KVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLS 475 (842)
T ss_pred cceecccccCccCC-CceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccch
Confidence 99999999999999 479999999999996442211110
Q ss_pred --------------------------------------------------------------------------------
Q 008156 264 -------------------------------------------------------------------------------- 263 (576)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (576)
T Consensus 476 ~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~ 555 (842)
T KOG1870|consen 476 WELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLV 555 (842)
T ss_pred hhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCccee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008156 264 -------------------------------------------------------------------------------- 263 (576)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (576)
T Consensus 556 ~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (842)
T KOG1870|consen 556 SVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESAL 635 (842)
T ss_pred eccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccc
Confidence
Q ss_pred ---------------------------------------------------------CCCCCHHHHHhhhcCeeecc---
Q 008156 264 ---------------------------------------------------------PFGCTLEDCLKQFLTAEQLE--- 283 (576)
Q Consensus 264 ---------------------------------------------------------~~~~sL~~~L~~~~~~E~i~--- 283 (576)
....+|++||+.|+.+|.|.
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~ 715 (842)
T KOG1870|consen 636 RFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDD 715 (842)
T ss_pred cccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccc
Confidence 44789999999999999996
Q ss_pred ccccCCcchhhhhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEE
Q 008156 284 NYHCSHCWHIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSI 363 (576)
Q Consensus 284 ~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~ 363 (576)
.++|+.|+.. ..|+|+..+++||+||+||||||.|
T Consensus 716 ~w~C~~Cke~---------------------------------------------~~A~Kk~~lwrlPeiLiihLKrF~~ 750 (842)
T KOG1870|consen 716 RWYCPQCKEL---------------------------------------------RQATKKLDLWRLPEILIIHLKRFQY 750 (842)
T ss_pred cccChHHHHH---------------------------------------------HHHhhhhhhhhCCceEEEEeeccee
Confidence 4999999988 9999999999999999999999999
Q ss_pred cCCCceeeeccceeeccc-cccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCC
Q 008156 364 NEMGELVKIWGHIAFPLI-LDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHT 442 (576)
Q Consensus 364 ~~~~~~~Ki~~~V~fP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (576)
...+ ..|+.+.|.||.. ||+++|+...
T Consensus 751 ~r~~-~~k~~~~v~fPi~~ld~s~~~~~~--------------------------------------------------- 778 (842)
T KOG1870|consen 751 SRES-SSKVKTKVEFPLGSLDLSEFVVNK--------------------------------------------------- 778 (842)
T ss_pred echh-hhhhCccccCCCcCCCcchhhccC---------------------------------------------------
Confidence 8764 4899999999998 9999999442
Q ss_pred ccCCccccCCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEE
Q 008156 443 KALGVDELGCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYR 522 (576)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayv 522 (576)
....|+|+||+.|.|...+|||+||.
T Consensus 779 ------------------------------------------------------~~~~Y~l~av~nHyG~l~~GHYta~~ 804 (842)
T KOG1870|consen 779 ------------------------------------------------------EQVLYDLYAVGNHYGQLSGGHYTAYA 804 (842)
T ss_pred ------------------------------------------------------ccceeeeeeeecccCCcCCcchhhhh
Confidence 11479999999999999999999999
Q ss_pred EecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEecc
Q 008156 523 SVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERII 574 (576)
Q Consensus 523 r~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv~ 574 (576)
|.. .+++||.|||..|++++++++....||+|||+|++
T Consensus 805 k~~--------------~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 805 KNV--------------GDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred hcC--------------CCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 963 68999999999999999999999999999999974
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-39 Score=374.35 Aligned_cols=302 Identities=25% Similarity=0.320 Sum_probs=255.0
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
.+.++||.|+||||||||+||+|+.++.||..+..+.......++...+..+|+.||..|+. +...++.|..+...+.
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~--s~~k~Vdt~~~~~~~~ 244 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQM--SKRKYVDTSELTKSLG 244 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhh--cCCCCcCchhhhhhhh
Confidence 34679999999999999999999999999999999885333444667799999999999954 5557999999999999
Q ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeec
Q 008156 151 LYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGS 230 (576)
Q Consensus 151 ~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s 230 (576)
+.. ...++|||++||++.|+|.|++.+..... ...|.++|.|.+.+
T Consensus 245 ~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~--------------------------------~~~l~~lf~g~~~~ 290 (1093)
T KOG1863|consen 245 WDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV--------------------------------ENTLQDLFTGKMKS 290 (1093)
T ss_pred ccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh--------------------------------hhhhhhhhcCCcce
Confidence 875 55679999999999999999998865321 22377899999999
Q ss_pred eEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc--cccCCcchhhhhhhhccccccHHH
Q 008156 231 ILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN--YHCSHCWHIAAIKYLSITEANEME 308 (576)
Q Consensus 231 ~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~--~~C~~C~~~~~~~~l~~~~~~~~~ 308 (576)
.+.|..|.. .+.+.|.|+++.|+ +....+|.++|..|+..|.++| -+|..|...
T Consensus 291 ~i~c~~~~~-~s~r~e~f~d~ql~--------~~g~~nl~~sf~~y~~~E~l~gdn~~~~~~~~~--------------- 346 (1093)
T KOG1863|consen 291 VIKCIDVDF-ESSRSESFLDLQLN--------GKGVKNLEDSLHLYFEAEILLGDNKYDAECHGL--------------- 346 (1093)
T ss_pred EEEEEeeee-eccccccccCcccc--------ccchhhHHHHHHHhhhHHHhcCCccccccccch---------------
Confidence 999999996 68899999999993 3344579999999999999986 568899987
Q ss_pred HHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-CceeeeccceeeccccccCcC
Q 008156 309 IEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDLFPF 387 (576)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl~~~ 387 (576)
+.|.|...+.+||++|.|||+||.|+.. +...|++....||..|++.+|
T Consensus 347 ------------------------------~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~ 396 (1093)
T KOG1863|consen 347 ------------------------------QDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRY 396 (1093)
T ss_pred ------------------------------hhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchh
Confidence 8899999999999999999999999965 778999999999999999999
Q ss_pred ccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCC
Q 008156 388 VKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPP 467 (576)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (576)
.... ...
T Consensus 397 ~~~~---~~~---------------------------------------------------------------------- 403 (1093)
T KOG1863|consen 397 LSRF---KAE---------------------------------------------------------------------- 403 (1093)
T ss_pred cccc---chh----------------------------------------------------------------------
Confidence 8430 000
Q ss_pred CCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEE
Q 008156 468 TQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCI 547 (576)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~ 547 (576)
.......|+|+||++|.|.+.+|||++|++. ...++|++|
T Consensus 404 --------------------------~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~--------------~~~~~w~kf 443 (1093)
T KOG1863|consen 404 --------------------------ESERSAVYSLHAVLVHSGDAHSGHYVAYINP--------------KLDGKWVKF 443 (1093)
T ss_pred --------------------------hhhccceeccchhhcccccccCccceeeecc--------------hhhccceec
Confidence 0001147999999999777999999999993 368999999
Q ss_pred eCCceeeechhhhccCc----------------eEEEEEEeccC
Q 008156 548 SDSQVYSVSVNDVLAAE----------------ASLLFYERIIE 575 (576)
Q Consensus 548 nD~~V~~v~~~~v~~~~----------------aYlLfY~rv~~ 575 (576)
||..|+.++..+++..+ ||+|+|-|.+.
T Consensus 444 dd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~ 487 (1093)
T KOG1863|consen 444 DDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSC 487 (1093)
T ss_pred cCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCc
Confidence 99999999988876531 79999999764
No 33
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.3e-39 Score=317.65 Aligned_cols=244 Identities=21% Similarity=0.209 Sum_probs=189.2
Q ss_pred CCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHH
Q 008156 73 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELY 152 (576)
Q Consensus 73 ~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~ 152 (576)
..+||.|.|.|||+||+||+|+++|+||+++...... .....+|.++|..||..
T Consensus 14 ~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~~---~~~~~~l~~el~~lfs~----------------------- 67 (268)
T cd02672 14 NYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILVA---CPKESCLLCELGYLFST----------------------- 67 (268)
T ss_pred cccccccCCccchHHHHHHHHHhcHHHHHHHHhhccc---CCcCccHHHHHHHHHHH-----------------------
Confidence 6899999999999999999999999999984332222 23578999999999900
Q ss_pred hhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceE
Q 008156 153 IQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSIL 232 (576)
Q Consensus 153 ~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i 232 (576)
=.+-|-.+|++.+..+... .+
T Consensus 68 ----------~iq~F~~fll~~i~~~~~~-----------------------------------------~~-------- 88 (268)
T cd02672 68 ----------LIQNFTRFLLETISQDQLG-----------------------------------------TP-------- 88 (268)
T ss_pred ----------HHHHHHHHHHHHHHHHhcc-----------------------------------------cC--------
Confidence 0133566677777654321 00
Q ss_pred EecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHH
Q 008156 233 TCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEEL 312 (576)
Q Consensus 233 ~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~ 312 (576)
..|++ .+.+.++|+.|+|+.+... .....+|.+||+.|+..|.+.++.|++|+..
T Consensus 89 --~~C~~-~s~~~~~~~~LsLpip~~~---~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~------------------- 143 (268)
T cd02672 89 --FSCGT-SRNSVSLLYTLSLPLGSTK---TSKESTFLQLLKRSLDLEKVTKAWCDTCCKY------------------- 143 (268)
T ss_pred --CCCCc-eeeccccceeeeeecCccc---cccCCCHHHHHHHHhhhhhcccccccccCcc-------------------
Confidence 57885 7899999999999654322 2345799999999999999988999999987
Q ss_pred HHhhccCccccccccccCCCCCCcccccceeEEEeecCCc----eEEEEeeceEEcCC------Cceeeeccceeecccc
Q 008156 313 RRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQ----ILCIHLQRVSINEM------GELVKIWGHIAFPLIL 382 (576)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~----~L~IhL~Rf~~~~~------~~~~Ki~~~V~fP~~L 382 (576)
+.+.|+..|.++|+ ||+|||+||.+... ....|+...|.||..+
T Consensus 144 --------------------------~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~ 197 (268)
T cd02672 144 --------------------------QPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAID 197 (268)
T ss_pred --------------------------cccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccc
Confidence 99999999999999 99999999986432 1246778888888887
Q ss_pred ccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCC
Q 008156 383 DLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGE 462 (576)
Q Consensus 383 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (576)
++.......
T Consensus 198 ~~~~~~~~~----------------------------------------------------------------------- 206 (268)
T cd02672 198 HDKLVKNRG----------------------------------------------------------------------- 206 (268)
T ss_pred cchhhhccC-----------------------------------------------------------------------
Confidence 665433110
Q ss_pred CCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCC
Q 008156 463 SILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPL 541 (576)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~ 541 (576)
......|+|+|||+|+|. .++|||+||||..... ...
T Consensus 207 --------------------------------~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~----------~~~ 244 (268)
T cd02672 207 --------------------------------QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEE----------STH 244 (268)
T ss_pred --------------------------------CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCC----------CCC
Confidence 112347999999999999 6999999999964111 126
Q ss_pred CceEEEeCCceeeechhhhccCceEEEEEE
Q 008156 542 THWFCISDSQVYSVSVNDVLAAEASLLFYE 571 (576)
Q Consensus 542 ~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~ 571 (576)
++||+|||..|++|+. .||||||+
T Consensus 245 ~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 245 GRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred CcEEEecCeEEEEcCc------hheeeecC
Confidence 7999999999999988 79999995
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-35 Score=286.41 Aligned_cols=233 Identities=25% Similarity=0.316 Sum_probs=160.7
Q ss_pred CcccCCC-chhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhh
Q 008156 76 GLQNLGN-NCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQ 154 (576)
Q Consensus 76 GL~NlGN-TCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~ 154 (576)
|..|.+| +|||-|+|=++++
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 7899999 9999999999987
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEe
Q 008156 155 NFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTC 234 (576)
Q Consensus 155 ~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C 234 (576)
.|||++||+++|++.|+.-+... ..++|.|-...+-.
T Consensus 22 -----~q~D~~e~~~~l~~~~~~~~~~~-------------------------------------~~~~~~~g~~~~~~- 58 (241)
T cd02670 22 -----EQQDPEEFFNFITDKLLMPLLEP-------------------------------------KVDIIHGGKKDQDD- 58 (241)
T ss_pred -----HhcCHHHHHHHHHHHHhhhhhhH-------------------------------------HHHHHhcCcccccc-
Confidence 89999999999999988643211 22445443222110
Q ss_pred cCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHHHH
Q 008156 235 QSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRR 314 (576)
Q Consensus 235 ~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~ 314 (576)
.+.-.|.|..|+++.. .. ...+||++||+.|+..|.
T Consensus 59 ------~~~~~e~~l~l~ip~~-~~----~~~~tLedcLe~~~~~e~--------------------------------- 94 (241)
T cd02670 59 ------DKLVNERLLQIPVPDD-DD----GGGITLEQCLEQYFNNSV--------------------------------- 94 (241)
T ss_pred ------ccccccceEEeecccC-CC----CCcCCHHHHHHHHhchhh---------------------------------
Confidence 1334677777777422 11 235799999999998652
Q ss_pred hhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCCC
Q 008156 315 CSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGI 394 (576)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~ 394 (576)
|.++|++|+||||||.|+. +...|+.++|.||..|||.+|+.+....
T Consensus 95 --------------------------------i~~lP~vLiIhLKRF~~~~-~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~ 141 (241)
T cd02670 95 --------------------------------FAKAPSCLIICLKRYGKTE-GKAQKMFKKILIPDEIDIPDFVADDPRA 141 (241)
T ss_pred --------------------------------hhhCCCeEEEEEEccccCC-CcceeCCcEECCCCcCCchhhccccccc
Confidence 6899999999999999988 6779999999999999999999664210
Q ss_pred CCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCCc
Q 008156 395 NDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNV 474 (576)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (576)
..... . +....... +
T Consensus 142 ~~~~~------------------------------------~------~~~~~~~~---------------~-------- 156 (241)
T cd02670 142 CSKCQ------------------------------------L------ECRVCYDD---------------K-------- 156 (241)
T ss_pred ccccc------------------------------------c------cccccccc---------------c--------
Confidence 00000 0 00000000 0
Q ss_pred cCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCcee
Q 008156 475 RGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVY 553 (576)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~ 553 (576)
..........|+|+|||+|.|+ +++|||+||+|........ ......++.|++|||..|+
T Consensus 157 ----------------~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~---~~~~~~~~~W~~FDD~~v~ 217 (241)
T cd02670 157 ----------------DFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTE---TDNEAYNAQWVFFDDMADR 217 (241)
T ss_pred ----------------cccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccc---cccCCCCCeEEEecCcccc
Confidence 0001224468999999999998 9999999999975211100 1112345899999999988
Q ss_pred eechh------hhccCceEEEEEE
Q 008156 554 SVSVN------DVLAAEASLLFYE 571 (576)
Q Consensus 554 ~v~~~------~v~~~~aYlLfY~ 571 (576)
.+... .+....||||||+
T Consensus 218 ~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 218 DGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred cccccccccchhcccCCceEEEeC
Confidence 77432 4667789999996
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=3e-34 Score=290.93 Aligned_cols=294 Identities=23% Similarity=0.257 Sum_probs=234.2
Q ss_pred CCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhh
Q 008156 75 PGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQ 154 (576)
Q Consensus 75 ~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~ 154 (576)
.||.|.+++||+||+||+|+.+|++++.++.+. . .....+|.++|+-||..|.. ........+..|+++++....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~---c~~e~cL~cELgfLf~ml~~-~~~g~~cq~sNflr~l~~~~~ 75 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E---CPKEFCLLCELGFLFDMLDS-KAKGINCQASNFLRALSWIPE 75 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C---CCccccHHHHHHHHHHHhhh-hcCCCcChHHHHHHHHhcCHH
Confidence 599999999999999999999999999999887 3 22678999999999999972 245578888999999999855
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeeceEEe
Q 008156 155 NFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTC 234 (576)
Q Consensus 155 ~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~i~C 234 (576)
....+.|+|+++|+++|+++|+.++......... ............|..+|+......++|
T Consensus 76 a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 76 AAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFH-------------------TSENSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred HHhcchhHHHHHHHHHHHHHHhHHHHhcCccccc-------------------ccccccCCCcchHHHHhCcceeeeecc
Confidence 5666789999999999999999998765432100 000000111223778999999999999
Q ss_pred cCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHHHH
Q 008156 235 QSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRR 314 (576)
Q Consensus 235 ~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~ 314 (576)
..|++ .+.+.+....+.|..++ . ....++.++|+.++..|......|++|+..
T Consensus 137 ~~c~~-~~~~~~~~~~~~l~yp~-~----~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~--------------------- 189 (295)
T PF13423_consen 137 TSCGH-ESVKESSTLVLDLPYPP-S----NSNVTFSQVLEHSLNREQQTRAWCEKCNKY--------------------- 189 (295)
T ss_pred cccCC-eEEeecceeeeeccCCC-C----CccchHHHHHHHHHhhcccccccccccccc---------------------
Confidence 99996 67888888888874333 1 235699999999999999999999999986
Q ss_pred hhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCCC
Q 008156 315 CSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGI 394 (576)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~ 394 (576)
+....+..|.++|+||.|.++|+.+...| ..|....+.||..+++..++.+....
T Consensus 190 ------------------------~~~~~~r~i~~LPpVL~In~~~~~~~~~w-~~~~~~~~~ip~~i~~~~~~~~~~~~ 244 (295)
T PF13423_consen 190 ------------------------QPTEQRRTIRSLPPVLSINLNRYSEEEFW-PKKNWLKIWIPPSINLPHFIADDSQS 244 (295)
T ss_pred ------------------------cceeeeeeccCCCcEEEEEccCCCccccc-ccccCCceecceeeeccccccccccc
Confidence 77888999999999999999999988556 78999999999999999887443100
Q ss_pred CCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCCc
Q 008156 395 NDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNV 474 (576)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (576)
...
T Consensus 245 ~~~----------------------------------------------------------------------------- 247 (295)
T PF13423_consen 245 DLE----------------------------------------------------------------------------- 247 (295)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCce
Q 008156 475 RGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQV 552 (576)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V 552 (576)
.......|+|.|+|+|.|. .++||||||||... ..+.+||.|||-.|
T Consensus 248 -------------------~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~------------~~~~~W~lFNDflV 295 (295)
T PF13423_consen 248 -------------------GESGIFKYELRSMVCHIGDSIESGHLVSLVRVGP------------SDDSQWYLFNDFLV 295 (295)
T ss_pred -------------------CCCCceEEEEEEEEEEecCCCCCCceEEEEEcCC------------CCCCcEEEECcEeC
Confidence 1234568999999999999 99999999999742 12478999999765
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=280.19 Aligned_cols=336 Identities=24% Similarity=0.261 Sum_probs=242.8
Q ss_pred CCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCC-CCCCCChHHHHHHHHHHHHHhcCC---------------
Q 008156 72 CLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECE-EPDEDLPLTVALASLLEELCLVGE--------------- 135 (576)
Q Consensus 72 ~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~l~~~L~~L~~~l~~~~~--------------- 135 (576)
..|+|+.|-||-|||||+||+|+.|++|.+.+........ ......+++.++..+..+.++...
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 3699999999999999999999999999998876653211 124678999999998888752111
Q ss_pred -----------CCceeChHHHHHHHHHHhhcc---CCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhh------hhh
Q 008156 136 -----------TRLVLSPQKVMLAMELYIQNF---NLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVD------AFE 195 (576)
Q Consensus 136 -----------~~~~i~p~~~~~~l~~~~~~f---~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~------~~~ 195 (576)
+..++-|..+...+... +.| ..|.|.||.|||.++||.||+|+............+ +..
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~ 184 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTM-SRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINN 184 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccC-CchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccc
Confidence 12344455555444443 333 358999999999999999999987543311111100 000
Q ss_pred hhhhhhhchhhhh-----------------hhHHhhhhhhcccccccceeeceEEecCCCCcccccccccceeecccCCC
Q 008156 196 AASCRILSLKRRE-----------------VQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLD 258 (576)
Q Consensus 196 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~ 258 (576)
..-+....+...+ ......-....|+.+|+|++++.+.-..-+ .+...+||..|+|++..
T Consensus 185 ~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nk--eS~tlqPF~tlqldiq~- 261 (420)
T KOG1871|consen 185 GNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNK--ESATLQPFFTLQLDIQS- 261 (420)
T ss_pred cccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccc--cccccCccceeeeeeec-
Confidence 0000000000000 000011112348899999999999876665 47999999999996533
Q ss_pred CCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCccc
Q 008156 259 SGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKF 338 (576)
Q Consensus 259 ~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (576)
....+++++|..+...|.+.++.-. -+..
T Consensus 262 -----~~i~sv~~ales~~~re~lp~~st~-s~~e--------------------------------------------- 290 (420)
T KOG1871|consen 262 -----EKIHSVQDALESLVARESLPGYSTK-SGQE--------------------------------------------- 290 (420)
T ss_pred -----cccCCHHHHhhccChhhcccceecC-CCCe---------------------------------------------
Confidence 3446999999999999999976654 2222
Q ss_pred ccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCC-CCCCCchhHHhhhhhccccCCCCCcc
Q 008156 339 SHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSG-VGINDLDESWQRGQAKVLNERPSSSL 417 (576)
Q Consensus 339 ~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (576)
..+.+++.+.+||++|++||+||.|...|...|+...+.+|-.|.+..-|... ++.+
T Consensus 291 V~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~---------------------- 348 (420)
T KOG1871|consen 291 VEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKIR---------------------- 348 (420)
T ss_pred echhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhhhccccchh----------------------
Confidence 78999999999999999999999998887789999999999999988766321 0000
Q ss_pred ccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCC
Q 008156 418 NHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPN 497 (576)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (576)
....
T Consensus 349 ----------------------------------------------------------------------------~~~~ 352 (420)
T KOG1871|consen 349 ----------------------------------------------------------------------------ILIA 352 (420)
T ss_pred ----------------------------------------------------------------------------hhcc
Confidence 0123
Q ss_pred CceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCc----eEEEEEEe
Q 008156 498 TYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAE----ASLLFYER 572 (576)
Q Consensus 498 ~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~----aYlLfY~r 572 (576)
...|+|.|||.|.|. +..|||..-+.+. ..+.|+++||..|..+..++|++.+ ||+|+|+|
T Consensus 353 ~~~yks~~vvyhtgtsatvghYl~dv~~s--------------~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~ 418 (420)
T KOG1871|consen 353 TRPYKSLAVVYHTGTSATVGHYLEDVSRS--------------VPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIE 418 (420)
T ss_pred ccccceEEEEEecccccccCceEEeeeec--------------ccCceeEeccceeeeccHhhhccccCccchheeEeee
Confidence 447999999999999 9999999999974 6789999999999999999998754 99999998
Q ss_pred cc
Q 008156 573 II 574 (576)
Q Consensus 573 v~ 574 (576)
.+
T Consensus 419 ~d 420 (420)
T KOG1871|consen 419 AD 420 (420)
T ss_pred cC
Confidence 64
No 37
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-34 Score=305.63 Aligned_cols=327 Identities=24% Similarity=0.350 Sum_probs=244.7
Q ss_pred CCCCcccCCCchhhH--HHHHHHhccchhHHHHHhhhccCCC-CCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHH
Q 008156 73 LVPGLQNLGNNCFLN--VILQALASCTCFLPFLQKVMGECEE-PDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAM 149 (576)
Q Consensus 73 ~~~GL~NlGNTCY~N--SvLQ~L~~~p~f~~~l~~~~~~~~~-~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l 149 (576)
..-|..|.+++|+.| ++.|.+..+..++.....+...... ......+...+..++............+.|..++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~ 310 (587)
T KOG1864|consen 231 RVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDL 310 (587)
T ss_pred cccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhh
Confidence 567999999999999 9999999999888655544433211 1234455566666666554434445688999999999
Q ss_pred HHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhh--hhhhhhhhhhchhhh-hhhHHhhhhhhcccccccc
Q 008156 150 ELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVD--AFEAASCRILSLKRR-EVQSEQKRWRKHFFGPFDG 226 (576)
Q Consensus 150 ~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~F~g 226 (576)
++....|..++|||||||+.++++.+++.+............. ..+............ ........| +..+|.|
T Consensus 311 ~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~---v~~lf~g 387 (587)
T KOG1864|consen 311 IKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENW---VSKLFQG 387 (587)
T ss_pred hhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhH---HHHhhcC
Confidence 9999999999999999999999999998876543221111110 000000000000000 111122334 6678999
Q ss_pred eeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhcccc
Q 008156 227 ILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITE 303 (576)
Q Consensus 227 ~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~ 303 (576)
++..+.+|..|++ .+.+.+.|.+++++...+ ...++..+|+.|...|.+.| |.|+.|...
T Consensus 388 ~l~~et~Clsc~t-~T~~de~f~D~~~~v~~d------e~~si~~~l~~~~~~e~l~g~nky~c~~c~s~---------- 450 (587)
T KOG1864|consen 388 ILTNETRCLSCET-ITSRDEGFLDLSVAVEID------ENTSITNLLKSFSSTETLSGENKYSCENCCSL---------- 450 (587)
T ss_pred eeeeeeeeccccc-cccccccccccceecccc------ccccHHHHHHHhcchhhccCCCcccccccCch----------
Confidence 9999999999995 799999999999954322 35699999999999999976 999999987
Q ss_pred ccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-Cceeeeccceeecccc
Q 008156 304 ANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLIL 382 (576)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~L 382 (576)
+.|.++..|..+|.+|+||||||.|+.. ....|+...|.||..|
T Consensus 451 -----------------------------------qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel 495 (587)
T KOG1864|consen 451 -----------------------------------QEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLEL 495 (587)
T ss_pred -----------------------------------hhHHHhccccCCcceeeeehhccccccccccccccccccccccce
Confidence 9999999999999999999999999863 3458999999999999
Q ss_pred ccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCC
Q 008156 383 DLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGE 462 (576)
Q Consensus 383 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (576)
.+.....+..
T Consensus 496 ~l~~~~~~~~---------------------------------------------------------------------- 505 (587)
T KOG1864|consen 496 RLKDTLKDDN---------------------------------------------------------------------- 505 (587)
T ss_pred eecccccccc----------------------------------------------------------------------
Confidence 9877553321
Q ss_pred CCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCC
Q 008156 463 SILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPL 541 (576)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~ 541 (576)
.+...|.|+|||+|.|. .+.|||+||+|.. .
T Consensus 506 ---------------------------------~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~---------------~ 537 (587)
T KOG1864|consen 506 ---------------------------------NPDRKYDLVAVVVHLGSTPNRGHYVAYVKSL---------------D 537 (587)
T ss_pred ---------------------------------CccceeeEEEEEEeccCCCCCcceEEEEeeC---------------C
Confidence 11247999999999999 9999999999952 3
Q ss_pred CceEEEeCCceeeechhhhccC---ceEEEEEEe
Q 008156 542 THWFCISDSQVYSVSVNDVLAA---EASLLFYER 572 (576)
Q Consensus 542 ~~W~~~nD~~V~~v~~~~v~~~---~aYlLfY~r 572 (576)
-.|++|||+.|..++.++|... .+|+++|..
T Consensus 538 ~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~ 571 (587)
T KOG1864|consen 538 FNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV 571 (587)
T ss_pred CCceecccccccccCcchhhhccCCCccceeeeE
Confidence 3399999999999999999764 366666654
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.93 E-value=1.7e-25 Score=218.00 Aligned_cols=300 Identities=19% Similarity=0.186 Sum_probs=232.1
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
.++.+||.|+-++=|+|++||+|.+++++|+|++.... ..+....++..|..+++.||....-..-++|.++++++.
T Consensus 131 LpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n---~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~ 207 (442)
T KOG2026|consen 131 LPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN---YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVM 207 (442)
T ss_pred eeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc---ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence 46899999999999999999999999999999876532 123567899999999999999888889999999999987
Q ss_pred HH-hhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceee
Q 008156 151 LY-IQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILG 229 (576)
Q Consensus 151 ~~-~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~ 229 (576)
.. ...|..++|-|+-|||.|||+.||..++....+ .+.|+.-|.|.++
T Consensus 208 ~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~-------------------------------~SIi~~~fqG~~r 256 (442)
T KOG2026|consen 208 KLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKA-------------------------------SSIIHKSFQGEVR 256 (442)
T ss_pred HHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCc-------------------------------hhHhhHhhcceEE
Confidence 76 467999999999999999999999998765421 1237778999886
Q ss_pred ceEEecC---CCCcccccccccceeecccCCC------CCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhc
Q 008156 230 SILTCQS---CLSQISLDYQFFHSLPLSPVLD------SGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLS 300 (576)
Q Consensus 230 s~i~C~~---C~~~~s~~~e~f~~LsL~~~~~------~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~ 300 (576)
...+=.. -.+......-+|+.|.|++++. ....+.+.+.|-++|..|.....-+ +.-
T Consensus 257 i~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e-~~~------------- 322 (442)
T KOG2026|consen 257 IVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE-VVT------------- 322 (442)
T ss_pred eeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee-ecc-------------
Confidence 5433222 1112345566899999885553 2334677889999999987655444 110
Q ss_pred cccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeec-
Q 008156 301 ITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFP- 379 (576)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP- 379 (576)
+..+ ++..+.++|+|||+|++||.-+. .-..|+.+-|.||
T Consensus 323 -------------------------------------~~~~-~rf~l~k~P~ylifh~~rF~kNn-~f~ekNpTl~~f~~ 363 (442)
T KOG2026|consen 323 -------------------------------------PKLA-MRFRLTKLPRYLIFHMKRFKKNN-FFKEKNPTLVEFPY 363 (442)
T ss_pred -------------------------------------hhhh-hheeeecCCceEEEEeeeccccC-cccccCCceeeccC
Confidence 0223 88999999999999999998443 4467999999999
Q ss_pred cccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccc
Q 008156 380 LILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEF 459 (576)
Q Consensus 380 ~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (576)
..+|+.++......
T Consensus 364 ~~~~~~~~~~~~~~------------------------------------------------------------------ 377 (442)
T KOG2026|consen 364 SEVDILHVLDRLKA------------------------------------------------------------------ 377 (442)
T ss_pred Cccchhhhhhhccc------------------------------------------------------------------
Confidence 45777665533210
Q ss_pred cCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCC
Q 008156 460 RGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFET 539 (576)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~ 539 (576)
....-..|.|.|-+.|- ..-|||...+++.
T Consensus 378 ----------------------------------~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~-------------- 407 (442)
T KOG2026|consen 378 ----------------------------------VNHKVTQYSLVANAIHE--DEDGNFRIQIYDN-------------- 407 (442)
T ss_pred ----------------------------------ccCccccccchhhhhcC--cccCceEEEEEeC--------------
Confidence 00111369999999998 7889999999974
Q ss_pred CCCceEEEeCCceeeechhhhccCceEEEEEEec
Q 008156 540 PLTHWFCISDSQVYSVSVNDVLAAEASLLFYERI 573 (576)
Q Consensus 540 ~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv 573 (576)
..++||.++|-.|++...+-|.-.++||-+||+-
T Consensus 408 ~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 408 SSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred CCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 7899999999999999999998888999888863
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.81 E-value=3.1e-19 Score=190.42 Aligned_cols=336 Identities=16% Similarity=0.123 Sum_probs=214.6
Q ss_pred CCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHH
Q 008156 73 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELY 152 (576)
Q Consensus 73 ~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~ 152 (576)
..+||.-.+-+-|.||+||.|+.+|++|.+++++... ...||+++|.-||..|....+ .+.....|+.+++..
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~-----~e~CL~CELGFLF~Ml~~S~G--~~Cqa~NFlraf~t~ 570 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICT-----KEFCLLCELGFLFTMLDSSTG--DPCQANNFLRAFRTN 570 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccc-----hhHHHHHHHHHHHHHHhhhcC--CccchhHHHHHHhhC
Confidence 6899999999999999999999999999999988555 688999999999999976433 588889999999876
Q ss_pred hhccCCC---cc-------------ccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhh-hhhHHhhh
Q 008156 153 IQNFNLT---SQ-------------QDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRR-EVQSEQKR 215 (576)
Q Consensus 153 ~~~f~~~---~Q-------------qDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 215 (576)
...-..+ .| |||.-|.....+...+-..- ........ ....-.-.
T Consensus 571 ~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~------------------~~~~~s~~~~~~~~~vn 632 (1118)
T KOG1275|consen 571 PEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDC------------------RGLQQSESVDGESFKVN 632 (1118)
T ss_pred hHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHh------------------hhhhhhhcccCceeeec
Confidence 3221111 11 23332222222111110000 00000000 00000000
Q ss_pred hhhcccccccceeeceEEecCCCCcccccccccceeecccCCCCC-CCCCCCCCHHHHHhhhcCeeeccccccCCcchhh
Q 008156 216 WRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSG-STIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIA 294 (576)
Q Consensus 216 ~~~~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~-~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~ 294 (576)
....+.+.|+..+....+|..|++ ...+.-....+.|+-++... ......-...+.|++-.....-....|+.|.+.
T Consensus 633 ~~~~l~q~F~~~~e~~~~Cg~C~~-~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~- 710 (1118)
T KOG1275|consen 633 YAPVLQQSFCQEIEKSLRCGECGD-EKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKP- 710 (1118)
T ss_pred chhHHHHHhhhHHHHhhhcccccc-hhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccccccCC-
Confidence 111367789999999999999996 45554444444443222211 112333466667766444443333889999986
Q ss_pred hhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC---Cceee
Q 008156 295 AIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM---GELVK 371 (576)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~---~~~~K 371 (576)
.....+..+..||.+|.|...-+.-... .+..|
T Consensus 711 --------------------------------------------ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~ 746 (1118)
T KOG1275|consen 711 --------------------------------------------EPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNK 746 (1118)
T ss_pred --------------------------------------------CCcccccccccCcceeeeeeeccchhhhhhHHHhhc
Confidence 7888889999999999999887753321 23357
Q ss_pred eccceeeccccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccC
Q 008156 372 IWGHIAFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELG 451 (576)
Q Consensus 372 i~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (576)
....|.+|+.+.+..--.......... . ..
T Consensus 747 ~~~~vWLP~~~~~~~~k~~~~~v~~~s----------------------------------~---------------~~- 776 (1118)
T KOG1275|consen 747 LLEDVWLPEWFHMIISKNKAQLVSTIS----------------------------------D---------------LD- 776 (1118)
T ss_pred cccccccchheeEEEecccceeeeeec----------------------------------c---------------cc-
Confidence 888999999988765332211000000 0 00
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCC
Q 008156 452 CTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHE 530 (576)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~ 530 (576)
....+ +.....-.+|+|.|+|+|.|. -+.+|.|++|+..++.+.
T Consensus 777 --------------------------~~~~~---------~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~ 821 (1118)
T KOG1275|consen 777 --------------------------VSPLP---------DYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHV 821 (1118)
T ss_pred --------------------------CCCCc---------cccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccc
Confidence 00000 001223468999999999999 899999999998655433
Q ss_pred CCCCCCCCCCCCceEEEeCCceeeechhhhccCc-----eEEEEE
Q 008156 531 ENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAE-----ASLLFY 570 (576)
Q Consensus 531 ~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~-----aYlLfY 570 (576)
.. +.+.+||.|||-.|++++++|.+.-. +-||+|
T Consensus 822 ~~------~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 822 IK------PDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred cC------cCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 11 34489999999999999999998654 899999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.58 E-value=6e-07 Score=84.93 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=34.2
Q ss_pred ccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHH
Q 008156 78 QNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEEL 130 (576)
Q Consensus 78 ~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l 130 (576)
.|.-|.|++-++|-+|.++..+++.+-+.... ..+++..|...+.+.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~~~------e~s~~~~L~~~Y~qa 52 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELCSK------EESVFWRLFTKYNQA 52 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhccc------cccHHHHHHHHHHHH
Confidence 58889999999999999999999988663322 345555555544443
No 41
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00013 Score=79.72 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=61.8
Q ss_pred cccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCC--------CCCChHHHHHHHHHHHH---HhcCCC--CceeChH
Q 008156 77 LQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEP--------DEDLPLTVALASLLEEL---CLVGET--RLVLSPQ 143 (576)
Q Consensus 77 L~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~--------~~~~~l~~~L~~L~~~l---~~~~~~--~~~i~p~ 143 (576)
|.|.||+||.||+||+|.++|.|+..+..+....... ............+-..+ ...... ...++-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999998877655432210 11111111122111111 111010 1112222
Q ss_pred HHHHHHHHH---hhccCCCccccHHHHHHHHHHHHHHHHhh
Q 008156 144 KVMLAMELY---IQNFNLTSQQDAEEAFLHLMSSLREEFLE 181 (576)
Q Consensus 144 ~~~~~l~~~---~~~f~~~~QqDA~Efl~~Lld~L~~e~~~ 181 (576)
.+...+... ...|....|+||++++.-|+..+..-+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 333333222 34577789999999999999888876654
No 42
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=97.32 E-value=4.7e-05 Score=59.88 Aligned_cols=38 Identities=21% Similarity=0.119 Sum_probs=31.2
Q ss_pred cccCCchHHHHHHhh-hcCCCCCCcchhhhcccc-----ccccc
Q 008156 2 KCEGATSVRALVLQS-LKNGFLPHMKWVSASGLL-----GILGV 39 (576)
Q Consensus 2 ~~~~v~~~r~k~~~~-~~~~~l~~~~~~~~~~~~-----~~~g~ 39 (576)
..|||||+|||||.. .+|+.++|+.+++.++++ +|||+
T Consensus 31 ~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 31 TLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred HHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 468999999999941 267799999999999997 47775
No 43
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.0056 Score=67.40 Aligned_cols=58 Identities=29% Similarity=0.422 Sum_probs=43.8
Q ss_pred CCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceE--EEeCCceeee-chhhhccC------ceEE
Q 008156 497 NTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWF--CISDSQVYSV-SVNDVLAA------EASL 567 (576)
Q Consensus 497 ~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~--~~nD~~V~~v-~~~~v~~~------~aYl 567 (576)
+...|+|+++|.-... .++|.|+... .++|+ ..+|..+..+ +|.+|++- .+=+
T Consensus 723 p~t~yrLVSmv~~~e~--~~~~~C~Aye----------------~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpei 784 (806)
T KOG1887|consen 723 PNTKYRLVSMVGNHEE--GEEYICFAYE----------------PNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEI 784 (806)
T ss_pred cCceeEEEEEeeeccc--cceEEEeecc----------------CCcchhhHHHHHHhhhccchHHHHHHHhcccccHHH
Confidence 4558999999975543 7899999994 67887 9999988888 77887642 2556
Q ss_pred EEEEe
Q 008156 568 LFYER 572 (576)
Q Consensus 568 LfY~r 572 (576)
|||++
T Consensus 785 l~ye~ 789 (806)
T KOG1887|consen 785 LFYEA 789 (806)
T ss_pred HHHHH
Confidence 66654
No 44
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=93.06 E-value=0.048 Score=49.52 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=16.6
Q ss_pred CCCcccCCCchhhHHHHHHHhcc
Q 008156 74 VPGLQNLGNNCFLNVILQALASC 96 (576)
Q Consensus 74 ~~GL~NlGNTCY~NSvLQ~L~~~ 96 (576)
..|+.|.+|||++||++|.+..+
T Consensus 33 ft~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 33 FTGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp EE----SSSTHHHHHHHHHHHHH
T ss_pred EecCCCCCCChHHHHHHHHHHHc
Confidence 56999999999999999998754
No 45
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=91.48 E-value=0.057 Score=41.75 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=27.8
Q ss_pred cccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 2 KCEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 2 ~~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
..+|||++||+|+ .+|..|.|+.+++.+|++
T Consensus 31 ~~~gi~~~~q~L~--~~g~~l~d~~~L~~~~i~ 61 (71)
T cd01812 31 PVTGVEPRDQKLI--FKGKERDDAETLDMSGVK 61 (71)
T ss_pred HhhCCChHHeEEe--eCCcccCccCcHHHcCCC
Confidence 3589999999999 888899999999999986
No 46
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=90.31 E-value=0.064 Score=42.29 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=28.2
Q ss_pred cccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 2 KCEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 2 ~~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
..+|||+++|+|| ..|..|+|+.+++.++++
T Consensus 29 ~~~gip~~~q~L~--~~G~~L~d~~tL~~~~i~ 59 (76)
T cd01800 29 EETGMPAGKQKLQ--YEGIFIKDSNSLAYYNLA 59 (76)
T ss_pred HHHCCCHHHEEEE--ECCEEcCCCCcHHHcCCC
Confidence 3589999999999 899999999999999986
No 47
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=88.94 E-value=0.5 Score=43.11 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=25.7
Q ss_pred eecC--CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeech
Q 008156 509 HFGR--VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSV 557 (576)
Q Consensus 509 H~G~--~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~ 557 (576)
|.|. -..||-+.|.+. .+.||+|||+.+.+-++
T Consensus 130 ~agi~~~g~~Havfa~~t----------------s~gWy~iDDe~~y~~tP 164 (193)
T PF05408_consen 130 HAGIFLKGQEHAVFACVT----------------SDGWYAIDDEDFYPWTP 164 (193)
T ss_dssp EEEEEEESTTEEEEEEEE----------------TTCEEEEETTEEEE---
T ss_pred hhHheecCCcceEEEEEe----------------eCcEEEecCCeeeeCCC
Confidence 5666 458999999994 78999999999988743
No 48
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=85.88 E-value=0.98 Score=45.84 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=42.4
Q ss_pred CCCCcccCCCchhhHHHHHHHhccch-hHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHH
Q 008156 73 LVPGLQNLGNNCFLNVILQALASCTC-FLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMEL 151 (576)
Q Consensus 73 ~~~GL~NlGNTCY~NSvLQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~ 151 (576)
+..=|.=.-|+||+||++=.|-++.. |+. .++.+++..+. .-+|..|...+-.
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-------------------~~l~~aw~~f~-------~G~~~~fVa~~Ya 154 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFKS-------------------PGLDEAWNEFK-------AGDPAPFVAWCYA 154 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BSS-------------------HHHHHHHHHHH-------TT--HHHHHHHHH
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccCC-------------------HHHHHHHHHHh-------CCChHHHHHHHHH
Confidence 34445555899999999887765532 221 13455555552 2355667666655
Q ss_pred HhhccCCCccccHHHHHHHHHHHHH
Q 008156 152 YIQNFNLTSQQDAEEAFLHLMSSLR 176 (576)
Q Consensus 152 ~~~~f~~~~QqDA~Efl~~Lld~L~ 176 (576)
. .....+.--||+++|..|+..++
T Consensus 155 ~-~~~~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 155 S-TNAKKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp H-TT--TTS---HHHHHHHHHTTB-
T ss_pred H-cCCCCCCCcCHHHHHHHHHHhcc
Confidence 3 55667788999999999986543
No 49
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=84.65 E-value=0.29 Score=38.27 Aligned_cols=29 Identities=3% Similarity=-0.033 Sum_probs=26.1
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.|+|++||+|. ..|.+|+|+.+++..|++
T Consensus 35 ~~~~~~~qrLi--~~Gk~L~D~~tL~~ygi~ 63 (73)
T cd01791 35 TGTRPEKIVLK--KWYTIFKDHISLGDYEIH 63 (73)
T ss_pred hCCChHHEEEE--eCCcCCCCCCCHHHcCCC
Confidence 48999999999 778899999999999985
No 50
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=84.36 E-value=0.22 Score=38.44 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 33 ~~gi~~~~q~L~--~~g~~L~d~~~L~~~~i~ 62 (72)
T cd01809 33 EVGIPVEQQRLI--YSGRVLKDDETLSEYKVE 62 (72)
T ss_pred HHCcCHHHeEEE--ECCEECCCcCcHHHCCCC
Confidence 479999999999 888899999999999986
No 51
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=83.67 E-value=0.26 Score=38.74 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=27.3
Q ss_pred ccCC--chHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGA--TSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v--~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|| |++||+|+ ..|..|.|+.+++.+|++
T Consensus 33 ~~~i~~~~~~q~L~--~~G~~L~d~~~L~~~~i~ 64 (77)
T cd01805 33 EKGCDYPPEQQKLI--YSGKILKDDTTLEEYKID 64 (77)
T ss_pred hhCCCCChhHeEEE--ECCEEccCCCCHHHcCCC
Confidence 4688 99999999 889999999999999986
No 52
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=83.54 E-value=0.26 Score=36.82 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=27.3
Q ss_pred cccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 2 KCEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 2 ~~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
..+|+|+++|+|+ ..|..|.|+.+++.+|++
T Consensus 31 ~~~~~~~~~~~L~--~~g~~L~d~~tL~~~~i~ 61 (64)
T smart00213 31 ELTGIPVEQQRLI--YKGKVLEDDRTLADYNIQ 61 (64)
T ss_pred HHHCCCHHHEEEE--ECCEECCCCCCHHHcCCc
Confidence 3579999999999 888899999999988885
No 53
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=78.28 E-value=0.78 Score=36.46 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=25.8
Q ss_pred cCCchHHHHH--HhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALV--LQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~--~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|+|++||+| . ..|..|+|+..++.+|++
T Consensus 36 ~~i~~~~qrL~~~--~~G~~L~D~~tL~~~gi~ 66 (80)
T cd01792 36 IGVPAFQQRLAHL--DSREVLQDGVPLVSQGLG 66 (80)
T ss_pred hCCCHHHEEEEec--cCCCCCCCCCCHHHcCCC
Confidence 5899999999 6 678899999999999985
No 54
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=77.70 E-value=0.57 Score=37.09 Aligned_cols=30 Identities=0% Similarity=-0.186 Sum_probs=27.5
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||++.|||+ ..|..|+|+.+++..|++
T Consensus 35 ~~gi~~~~QrLi--~~Gk~L~D~~tL~~y~i~ 64 (78)
T cd01797 35 LFNVEPECQRLF--YRGKQMEDGHTLFDYNVG 64 (78)
T ss_pred HhCCCHHHeEEE--eCCEECCCCCCHHHcCCC
Confidence 379999999999 888899999999999986
No 55
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=76.33 E-value=0.67 Score=36.19 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=27.5
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||++.|+|+ ..|..|.|+.+++.++++
T Consensus 31 ~~gip~~~q~Li--~~Gk~L~D~~tL~~~~i~ 60 (74)
T cd01793 31 LEGIDVEDQVLL--LAGVPLEDDATLGQCGVE 60 (74)
T ss_pred hhCCCHHHEEEE--ECCeECCCCCCHHHcCCC
Confidence 479999999999 888899999999999996
No 56
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=75.76 E-value=0.73 Score=35.62 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
..|||++.|+|. ..|..|+|+..+..++++
T Consensus 31 ~~gi~~~~q~Li--~~G~~L~D~~~l~~~~i~ 60 (70)
T cd01794 31 AEGVDPCCQRWF--FSGKLLTDKTRLQETKIQ 60 (70)
T ss_pred HhCCCHHHeEEE--ECCeECCCCCCHHHcCCC
Confidence 469999999999 888899999999998885
No 57
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=74.28 E-value=0.78 Score=35.81 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|+|+++|+|. ..|..|.|+..++..|++
T Consensus 31 ~~gi~~~~q~L~--~~G~~L~D~~tL~~~~i~ 60 (74)
T cd01810 31 RERVQADQFWLS--FEGRPMEDEHPLGEYGLK 60 (74)
T ss_pred HhCCCHHHeEEE--ECCEECCCCCCHHHcCCC
Confidence 469999999999 888899999999999996
No 58
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=73.66 E-value=0.62 Score=35.64 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=27.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|.|+.++..+|++
T Consensus 28 ~~~~~~~~~~L~--~~G~~L~d~~tL~~~~i~ 57 (69)
T PF00240_consen 28 ETGIPPEQQRLI--YNGKELDDDKTLSDYGIK 57 (69)
T ss_dssp HHTSTGGGEEEE--ETTEEESTTSBTGGGTTS
T ss_pred ccccccccceee--eeeecccCcCcHHHcCCC
Confidence 579999999999 888899999999999996
No 59
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=72.30 E-value=0.91 Score=35.37 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|+|+++|+|+ ..|..|.|+.+++.+|++
T Consensus 33 ~~g~~~~~q~L~--~~g~~L~d~~~L~~~~i~ 62 (76)
T cd01803 33 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 62 (76)
T ss_pred HhCCCHHHeEEE--ECCEECCCCCcHHHcCCC
Confidence 579999999999 788899999999999885
No 60
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=71.80 E-value=0.98 Score=35.22 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=27.7
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||++.|+|. ..|..|.|+.+++.+|++
T Consensus 33 ~~gi~~~~q~L~--~~G~~L~d~~~L~~~~i~ 62 (74)
T cd01807 33 HLNVPEEQQRLL--FKGKALADDKRLSDYSIG 62 (74)
T ss_pred HHCCCHHHeEEE--ECCEECCCCCCHHHCCCC
Confidence 479999999999 888899999999999996
No 61
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=70.17 E-value=0.095 Score=58.03 Aligned_cols=52 Identities=17% Similarity=-0.037 Sum_probs=35.4
Q ss_pred ccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccC
Q 008156 339 SHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKS 390 (576)
Q Consensus 339 ~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~ 390 (576)
..+........+|..++.+++|+.++..+...|....+-.+...-|...+..
T Consensus 360 ~~~~~~~~~s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~ 411 (653)
T KOG1868|consen 360 KLWHGHGQFSVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNE 411 (653)
T ss_pred hhccCCCceecCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhc
Confidence 3344555667999999999999987766644577777666555545544433
No 62
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=69.59 E-value=1.4 Score=34.76 Aligned_cols=28 Identities=18% Similarity=0.038 Sum_probs=24.8
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|+|++||+|. ..|..|+|+ .++..|++
T Consensus 35 ~~~~~~~qrL~--~~Gk~L~d~-~L~~~gi~ 62 (78)
T cd01804 35 LKVPKERLALL--HRETRLSSG-KLQDLGLG 62 (78)
T ss_pred hCCChHHEEEE--ECCcCCCCC-cHHHcCCC
Confidence 58999999999 788899988 89999986
No 63
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=68.33 E-value=1.2 Score=48.20 Aligned_cols=103 Identities=14% Similarity=0.029 Sum_probs=57.4
Q ss_pred CCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCce---eChHHHHHHH
Q 008156 73 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLV---LSPQKVMLAM 149 (576)
Q Consensus 73 ~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~---i~p~~~~~~l 149 (576)
..+|+.|.+|+|+||+.+|.++.++.|.-+...............++...+..+...++........ ..|. ....+
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~ 154 (492)
T KOG1867|consen 76 EHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYKEQPFHQLDSTLLTHLAEATVCQQTLLKENPK-DRLVL 154 (492)
T ss_pred cccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhhccchhhccchhhhhhhhhhccchhcccCCcc-ccccc
Confidence 6889999999999999999999999886543322111111011223333333333333221111111 1111 11122
Q ss_pred HHHhhccCCCccccHHHHHHHHHHHHH
Q 008156 150 ELYIQNFNLTSQQDAEEAFLHLMSSLR 176 (576)
Q Consensus 150 ~~~~~~f~~~~QqDA~Efl~~Lld~L~ 176 (576)
......+.+..=+++.+|+..++..|.
T Consensus 155 ~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 155 STTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred ceeeecccccccccHHHHHHHHHHHhh
Confidence 222334555678899999999999997
No 64
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=68.09 E-value=1.8 Score=33.82 Aligned_cols=29 Identities=7% Similarity=-0.064 Sum_probs=25.9
Q ss_pred cCCc-hHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGAT-SVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~-~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.|+| +++|+|. -.|.+|+|+.+++..||+
T Consensus 36 egi~~~dqQrLI--y~GKiL~D~~TL~dygI~ 65 (75)
T cd01815 36 DSLPDPELIDLI--HCGRKLKDDQTLDFYGIQ 65 (75)
T ss_pred cCCCChHHeEEE--eCCcCCCCCCcHHHcCCC
Confidence 3675 9999999 899999999999999986
No 65
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=65.72 E-value=1.5 Score=34.04 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=26.8
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
-+|+|+++|+|+ ..|..|.|+.+++.++++
T Consensus 33 ~~g~~~~~qrL~--~~g~~L~d~~tl~~~~i~ 62 (76)
T cd01806 33 KEGIPPQQQRLI--YSGKQMNDDKTAADYKLE 62 (76)
T ss_pred hhCCChhhEEEE--ECCeEccCCCCHHHcCCC
Confidence 369999999999 888899999999999886
No 66
>PF14353 CpXC: CpXC protein
Probab=64.86 E-value=3.7 Score=35.85 Aligned_cols=47 Identities=21% Similarity=0.525 Sum_probs=25.7
Q ss_pred eEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchh
Q 008156 231 ILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHI 293 (576)
Q Consensus 231 ~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~ 293 (576)
+++|+.|++ ....+.+..+...-. ..+.+.| +.. .+-.+.|+.|+..
T Consensus 1 ~itCP~C~~--~~~~~v~~~I~~~~~----------p~l~e~i---l~g-~l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 1 EITCPHCGH--EFEFEVWTSINADED----------PELKEKI---LDG-SLFSFTCPSCGHK 47 (128)
T ss_pred CcCCCCCCC--eeEEEEEeEEcCcCC----------HHHHHHH---HcC-CcCEEECCCCCCc
Confidence 478999996 444454544443111 1222222 222 2224999999985
No 67
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=64.71 E-value=1.8 Score=33.46 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=25.7
Q ss_pred ccCCchHHHHHHhhhcCCCCCCc-chhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHM-KWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~-~~~~~~~~~ 34 (576)
.+|||++.|+|+ ..|..|.|+ ..++.+|++
T Consensus 32 ~~gip~~~q~Li--~~Gk~L~D~~~~L~~~gi~ 62 (71)
T cd01796 32 ESGIPASQQQLI--YNGRELVDNKRLLALYGVK 62 (71)
T ss_pred HhCCCHHHeEEE--ECCeEccCCcccHHHcCCC
Confidence 479999999999 788889887 468889986
No 68
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=64.25 E-value=1.8 Score=33.38 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=26.1
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|+|+++|+|. ..|..|.|+.+++.+|++
T Consensus 33 ~~i~~~~~~Li--~~Gk~L~d~~tL~~~~i~ 61 (71)
T cd01808 33 FKANQEQLVLI--FAGKILKDTDTLTQHNIK 61 (71)
T ss_pred hCCCHHHEEEE--ECCeEcCCCCcHHHcCCC
Confidence 58999999998 788899999999999985
No 69
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=64.15 E-value=2.1 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=26.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|+|+++|+|+ ..|..|.|+.++..+++.
T Consensus 30 ~~~~~~~~~~l~--~~g~~l~d~~~l~~~~v~ 59 (69)
T cd01769 30 KEGVPPEQQRLI--YAGKILKDDKTLSDYGIQ 59 (69)
T ss_pred HHCcChHHEEEE--ECCcCCCCcCCHHHCCCC
Confidence 479999999998 788899999888888775
No 70
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=63.26 E-value=1.9 Score=33.08 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=27.2
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
-+|+|+++|+|+ ..|..|.|+.+++.+|++
T Consensus 31 ~~gi~~~~q~Li--~~G~~L~d~~~l~~~~i~ 60 (70)
T cd01798 31 RQGVPPDQLRVI--FAGKELRNTTTIQECDLG 60 (70)
T ss_pred HHCCCHHHeEEE--ECCeECCCCCcHHHcCCC
Confidence 479999999999 888899999999999985
No 71
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=60.47 E-value=11 Score=40.16 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.0
Q ss_pred CCCCCcccCCCchhhHHHHHHHhccc
Q 008156 72 CLVPGLQNLGNNCFLNVILQALASCT 97 (576)
Q Consensus 72 ~~~~GL~NlGNTCY~NSvLQ~L~~~p 97 (576)
+...|++-.-|.||+||.|=+++.-.
T Consensus 366 gk~kgiqgh~nscyldstlf~~f~f~ 391 (724)
T KOG3556|consen 366 GKIKGIQGHPNSCYLDSTLFKPFEFD 391 (724)
T ss_pred cccccccCCcchhhcccccccccccc
Confidence 36789999999999999998888543
No 72
>PTZ00044 ubiquitin; Provisional
Probab=59.89 E-value=2.2 Score=33.25 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=27.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||++.|+|+ ..|..|.|+.+++.++++
T Consensus 33 ~~gi~~~~q~L~--~~g~~L~d~~~l~~~~i~ 62 (76)
T PTZ00044 33 KEGIDVKQIRLI--YSGKQMSDDLKLSDYKVV 62 (76)
T ss_pred HHCCCHHHeEEE--ECCEEccCCCcHHHcCCC
Confidence 479999999999 888899999999998885
No 73
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=58.38 E-value=3.7 Score=42.07 Aligned_cols=37 Identities=30% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhc
Q 008156 72 CLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMG 108 (576)
Q Consensus 72 ~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~ 108 (576)
..|+|+.|.||-|++||..|.+.+.-.+...+.....
T Consensus 176 ~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k 212 (420)
T KOG1871|consen 176 FTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQK 212 (420)
T ss_pred ccccccccccccccccchhhcccccCchhhhcCCccc
Confidence 4799999999999999999999999998887765433
No 74
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=56.31 E-value=2.9 Score=35.03 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|+|+.+++..+++
T Consensus 60 ~~gip~~~QrLi--~~Gk~L~D~~tL~dy~I~ 89 (103)
T cd01802 60 LEGIPVAQQHLI--WNNMELEDEYCLNDYNIS 89 (103)
T ss_pred HhCCChHHEEEE--ECCEECCCCCcHHHcCCC
Confidence 469999999999 788899999999999986
No 75
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=52.63 E-value=3 Score=34.20 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=23.8
Q ss_pred cccCCchHHHHHHhhhcCCCCCC-cchhhhcccc
Q 008156 2 KCEGATSVRALVLQSLKNGFLPH-MKWVSASGLL 34 (576)
Q Consensus 2 ~~~~v~~~r~k~~~~~~~~~l~~-~~~~~~~~~~ 34 (576)
--.||||++|||+ ..|..|.| ..+++..|+.
T Consensus 36 Q~f~V~P~dQkL~--~dG~~L~DDsrTLssyGv~ 67 (107)
T cd01795 36 HAFSVAPFDQNLS--IDGKILSDDCATLGTLGVI 67 (107)
T ss_pred HHhcCCcccceee--ecCceeccCCccHHhcCCC
Confidence 3479999999999 66655554 5678888985
No 76
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=42.47 E-value=1e+02 Score=27.11 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.1
Q ss_pred eeeceEEecCCCCc
Q 008156 227 ILGSILTCQSCLSQ 240 (576)
Q Consensus 227 ~~~s~i~C~~C~~~ 240 (576)
...-...|..||+.
T Consensus 66 ~~p~~~~C~~CG~~ 79 (135)
T PRK03824 66 EEEAVLKCRNCGNE 79 (135)
T ss_pred ecceEEECCCCCCE
Confidence 45668899999964
No 77
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=41.38 E-value=35 Score=32.05 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.8
Q ss_pred hcCeeeccccccCCcchh
Q 008156 276 FLTAEQLENYHCSHCWHI 293 (576)
Q Consensus 276 ~~~~E~i~~~~C~~C~~~ 293 (576)
||+.-.+..+.|+.|+.+
T Consensus 22 ~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 22 YFGEVLETSTICEHCGYR 39 (192)
T ss_pred CcceEEEEEEECCCCCCc
Confidence 577777778999999975
No 78
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=40.28 E-value=87 Score=24.86 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHHhhccCCCccccHHHHHHHHH
Q 008156 116 DLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLM 172 (576)
Q Consensus 116 ~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~Ll 172 (576)
-.||...|...+.+|+... .+++-..+++.|.+.+|....-.|...+-.|..|+
T Consensus 9 fiPL~EvlC~~I~dln~~~---~~at~E~l~~~L~~~yp~i~~Ps~e~l~~~L~~Li 62 (80)
T PF10264_consen 9 FIPLPEVLCWVISDLNAAG---QPATQETLREHLRKHYPGIAIPSQEVLYNTLGTLI 62 (80)
T ss_pred ceeHHHHHHHHHHHHhccC---CcchHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 4588899999999997533 58888999999999999766555544444444443
No 79
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=39.32 E-value=1.3e+02 Score=24.02 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=29.4
Q ss_pred eEEEEeec----CCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEe
Q 008156 504 ASVVEHFG----RVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYER 572 (576)
Q Consensus 504 ~aVV~H~G----~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r 572 (576)
..|.+..| ...-+||+.||. +.++|..|....... ...++.-|+-+
T Consensus 17 ~~v~V~vg~~~Hpm~~~HyI~wI~---------------------l~~~d~~v~~~~l~P--~~~P~~~F~l~ 66 (86)
T cd00524 17 FDVKVKVGSVPHPMTEEHYIEWIE---------------------LYFGDEKVGRVELTP--GTKPEATFTVK 66 (86)
T ss_pred CEEEEEECCccCCCCCCcEEEEEE---------------------EEECCeEEEEEECCC--CCCCEEEEEEe
Confidence 45677778 378899999998 445665666654433 33455555544
No 80
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.07 E-value=8.8 Score=40.15 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=25.9
Q ss_pred CchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 6 ATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 6 v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
||+++|||+ .+|.+|+|+.++..++|+
T Consensus 39 ip~~~QkLI--y~GkiL~Dd~tL~dy~I~ 65 (378)
T TIGR00601 39 YPVAQQKLI--YSGKILSDDKTVREYKIK 65 (378)
T ss_pred CChhHeEEE--ECCEECCCCCcHHHcCCC
Confidence 999999999 899999999999999997
No 81
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=35.79 E-value=9.8 Score=30.16 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=21.8
Q ss_pred CchHHHHHHhhhcCCCCCCcchhhhcc
Q 008156 6 ATSVRALVLQSLKNGFLPHMKWVSASG 32 (576)
Q Consensus 6 v~~~r~k~~~~~~~~~l~~~~~~~~~~ 32 (576)
.|+++|||. -+|.+|+|+.+++..+
T Consensus 41 ~~~~~QrLI--y~GKiLkD~~tL~~~~ 65 (79)
T cd01790 41 PLEQDQRLI--YSGKLLPDHLKLRDVL 65 (79)
T ss_pred CChhHeEEE--EcCeeccchhhHHHHh
Confidence 458999999 8999999999998775
No 82
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.24 E-value=24 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=25.0
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.||||..|.|. ..|..+-||.+..+..+.
T Consensus 34 eGIPp~qqrli--~~gkqm~DD~tA~~Y~~~ 62 (70)
T KOG0005|consen 34 EGIPPQQQRLI--YAGKQMNDDKTAAHYNLL 62 (70)
T ss_pred cCCCchhhhhh--hccccccccccHHHhhhc
Confidence 59999999999 888889999888877663
No 83
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=34.21 E-value=29 Score=19.06 Aligned_cols=11 Identities=9% Similarity=0.537 Sum_probs=8.9
Q ss_pred CCCceEEEeCC
Q 008156 540 PLTHWFCISDS 550 (576)
Q Consensus 540 ~~~~W~~~nD~ 550 (576)
.++.||.|+++
T Consensus 6 ~~~~wYy~~~~ 16 (19)
T PF01473_consen 6 DNGNWYYFDSD 16 (19)
T ss_dssp ETTEEEEETTT
T ss_pred ECCEEEEeCCC
Confidence 37899999875
No 84
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=33.32 E-value=14 Score=31.33 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=25.5
Q ss_pred cCCc--hHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGAT--SVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~--~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|+| ++.|||. -.|.+|.|+.+++.+++-
T Consensus 44 e~~P~~~~~qKLI--ysGKiLeD~~TL~d~~~p 74 (113)
T cd01814 44 EVGPKTVNEVKLI--SAGKILENSKTVGECRSP 74 (113)
T ss_pred ccCCCCHHHeEEE--eCCeecCCCCcHHHhCCc
Confidence 5778 9999999 788899999999999854
No 85
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=32.17 E-value=15 Score=28.74 Aligned_cols=29 Identities=10% Similarity=-0.042 Sum_probs=22.5
Q ss_pred ccCCchHHHHHHhhhcCCCC-CCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFL-PHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l-~~~~~~~~~~~~ 34 (576)
-+||||++|+|. .|+.| .|+..++.+|++
T Consensus 35 ~~gip~~~QrL~---~G~~L~dD~~tL~~ygi~ 64 (75)
T cd01799 35 DYGFPPAVQRWV---IGQRLARDQETLYSHGIR 64 (75)
T ss_pred HHCcCHHHEEEE---cCCeeCCCcCCHHHcCCC
Confidence 479999999993 55556 466889988885
No 86
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=31.60 E-value=1.6e+02 Score=24.45 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=36.4
Q ss_pred ceEEEeEEEEe---ecC-CC-C-----CeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCceEEE
Q 008156 499 YLYRLASVVEH---FGR-VG-S-----GHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLL 568 (576)
Q Consensus 499 ~~Y~L~aVV~H---~G~-~~-s-----GHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlL 568 (576)
..=++.+.|.| .|. .+ . -||+..+. +.+||..|-..++..-.+.++|+=
T Consensus 13 ~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~---------------------v~~ng~~v~~~~~~~siS~NP~l~ 71 (100)
T PF08770_consen 13 GVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVE---------------------VTYNGKPVFRADWGPSISENPYLR 71 (100)
T ss_dssp EEEEEEEEE----B-S-BB-TTS-BB--B-EEEEE---------------------EEETTEEEEEEEE-TTB-SS-EEE
T ss_pred CcEEEEEEEECCCccccccCCCCCCCChHheEEEE---------------------EEECCEEEEEEEeCCcccCCCcEE
Confidence 36789999998 344 22 3 38887777 457999999999999999999999
Q ss_pred EEEecc
Q 008156 569 FYERII 574 (576)
Q Consensus 569 fY~rv~ 574 (576)
|+-+..
T Consensus 72 F~~~~~ 77 (100)
T PF08770_consen 72 FSFKGK 77 (100)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 997754
No 87
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=31.25 E-value=41 Score=23.70 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=6.6
Q ss_pred ccccCCcchh
Q 008156 284 NYHCSHCWHI 293 (576)
Q Consensus 284 ~~~C~~C~~~ 293 (576)
+|.|+.|+..
T Consensus 34 ~w~CP~C~a~ 43 (47)
T PF00301_consen 34 DWVCPVCGAP 43 (47)
T ss_dssp T-B-TTTSSB
T ss_pred CCcCcCCCCc
Confidence 5999999875
No 88
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=30.51 E-value=72 Score=29.13 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=14.8
Q ss_pred hcCeeeccccccCCcchh
Q 008156 276 FLTAEQLENYHCSHCWHI 293 (576)
Q Consensus 276 ~~~~E~i~~~~C~~C~~~ 293 (576)
||+.-.+..+.|+.|+.+
T Consensus 20 ~F~evii~sf~C~~CGyr 37 (163)
T TIGR00340 20 YFGKIMLSTYICEKCGYR 37 (163)
T ss_pred CcceEEEEEEECCCCCCc
Confidence 577777778999999975
No 89
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=28.54 E-value=78 Score=28.82 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=14.7
Q ss_pred hcCeeeccccccCCcchh
Q 008156 276 FLTAEQLENYHCSHCWHI 293 (576)
Q Consensus 276 ~~~~E~i~~~~C~~C~~~ 293 (576)
||+.-.+..+.|+.|+.+
T Consensus 21 ~F~evii~sf~C~~CGyk 38 (160)
T smart00709 21 YFREVIIMSFECEHCGYR 38 (160)
T ss_pred CcceEEEEEEECCCCCCc
Confidence 577777778999999975
No 90
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=28.47 E-value=1.6e+02 Score=26.66 Aligned_cols=18 Identities=22% Similarity=0.765 Sum_probs=14.4
Q ss_pred CHHHHHhhhcCeeeccccccCCcchh
Q 008156 268 TLEDCLKQFLTAEQLENYHCSHCWHI 293 (576)
Q Consensus 268 sL~~~L~~~~~~E~i~~~~C~~C~~~ 293 (576)
|+.++++. +|.|+.|+..
T Consensus 120 tf~eA~~~--------~F~Cp~Cg~~ 137 (158)
T TIGR00373 120 TFNEAMEL--------NFTCPRCGAM 137 (158)
T ss_pred eHHHHHHc--------CCcCCCCCCE
Confidence 77777763 7999999974
No 91
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=25.60 E-value=1.8e+02 Score=23.37 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCCc-eeChHHHHHHHHHHhhccCCC--ccccHHHHHH
Q 008156 120 TVALASLLEELCLVGETRL-VLSPQKVMLAMELYIQNFNLT--SQQDAEEAFL 169 (576)
Q Consensus 120 ~~~L~~L~~~l~~~~~~~~-~i~p~~~~~~l~~~~~~f~~~--~QqDA~Efl~ 169 (576)
+..|.+.|+.+.. ..+.. .|+...|...|+...|+|.+. .+.|+.+++.
T Consensus 7 ~~~l~~aF~~fD~-~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~ 58 (88)
T cd05027 7 MVALIDVFHQYSG-REGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVME 58 (88)
T ss_pred HHHHHHHHHHhcc-cCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 3556677777631 12334 699999999998877777542 4444555444
No 92
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=25.40 E-value=70 Score=29.68 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=24.7
Q ss_pred CHHHHHhhhcCeeeccccccCCcchhhhhh-hhccccccHHHHHHHHHhhcc
Q 008156 268 TLEDCLKQFLTAEQLENYHCSHCWHIAAIK-YLSITEANEMEIEELRRCSAQ 318 (576)
Q Consensus 268 sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~-~l~~~~~~~~~~~~~~~~~~~ 318 (576)
|..++++. +|.|+.|+..-..- .-.....+++.|+.+...++.
T Consensus 128 tf~eA~~~--------~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~~ 171 (178)
T PRK06266 128 TFDEAMEY--------GFRCPQCGEMLEEYDNSELIKELKEQIKELEEELKL 171 (178)
T ss_pred eHHHHhhc--------CCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhcc
Confidence 66666653 79999999751110 001344456666666665553
No 93
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=25.35 E-value=4.8e+02 Score=23.10 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=19.6
Q ss_pred CCceEEEeEEEEeecCCCCCeEEEE
Q 008156 497 NTYLYRLASVVEHFGRVGSGHYTVY 521 (576)
Q Consensus 497 ~~~~Y~L~aVV~H~G~~~sGHY~ay 521 (576)
+....+|-||-.+.|..-+||-.-.
T Consensus 81 ~d~vLsLLai~fe~~e~p~G~v~L~ 105 (138)
T PF11164_consen 81 PDAVLSLLAITFEPGEAPAGHVLLT 105 (138)
T ss_pred CCceEEEEEEEEEeCCCCCcEEEEE
Confidence 3347999999999988888886543
No 94
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=24.63 E-value=19 Score=28.21 Aligned_cols=30 Identities=17% Similarity=-0.049 Sum_probs=24.5
Q ss_pred CCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 5 GATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 5 ~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
..|++||.|....+|..|+|+..+...|++
T Consensus 38 ~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~ 67 (77)
T cd01801 38 QLTVNRQSLRLEPKGKSLKDDDTLVDLGVG 67 (77)
T ss_pred CCCcceeEEEeCCCCcccCCcccHhhcCCC
Confidence 468999999744578899999989888885
No 95
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=24.30 E-value=90 Score=28.30 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=26.1
Q ss_pred EEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeee
Q 008156 502 RLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSV 555 (576)
Q Consensus 502 ~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v 555 (576)
...|+|+| .+-|++|.+|- ++.||-+|=..-.+.
T Consensus 98 ~~~gfI~N----~~~HWf~iRki----------------~~~wyNLDS~l~~P~ 131 (157)
T PF02099_consen 98 NEFGFICN----LSRHWFAIRKI----------------GGQWYNLDSKLKEPE 131 (157)
T ss_dssp CSSEEEEE----CTTEEEEEEEE----------------TTEEEEECTTTSS-E
T ss_pred hceEEEec----cCcceEEEEee----------------CCeeEeccCCCCCCc
Confidence 36799999 45599999994 899999987654443
No 96
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=23.74 E-value=88 Score=29.32 Aligned_cols=43 Identities=12% Similarity=0.318 Sum_probs=26.9
Q ss_pred eeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchh
Q 008156 227 ILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHI 293 (576)
Q Consensus 227 ~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~ 293 (576)
....++.|+.||. .-......+.++ ||..-.+.-+.|++|+..
T Consensus 10 ~~~~~~~CPvCg~-~l~~~~~~~~IP-----------------------yFG~V~i~t~~C~~CgYR 52 (201)
T COG1779 10 EFETRIDCPVCGG-TLKAHMYLYDIP-----------------------YFGEVLISTGVCERCGYR 52 (201)
T ss_pred eeeeeecCCcccc-eeeEEEeeecCC-----------------------ccceEEEEEEEccccCCc
Confidence 4567899999995 221122222221 566666667999999974
No 97
>PHA02998 RNA polymerase subunit; Provisional
Probab=23.14 E-value=89 Score=28.69 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=18.7
Q ss_pred cccccceee-ceEEecCCCCcccccccccceeec
Q 008156 221 FGPFDGILG-SILTCQSCLSQISLDYQFFHSLPL 253 (576)
Q Consensus 221 ~~~F~g~~~-s~i~C~~C~~~~s~~~e~f~~LsL 253 (576)
..+|...-. ..+.|..|++. .-.|+.+++
T Consensus 132 ~~yfnvlpkkt~v~CPkCg~~----~A~f~qlQT 161 (195)
T PHA02998 132 DDYFNVLDEKYNTPCPNCKSK----NTTPMMIQT 161 (195)
T ss_pred hhheeccCcccCCCCCCCCCC----ceEEEEEee
Confidence 345665555 78999999963 223555665
No 98
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=99 Score=31.29 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=14.3
Q ss_pred ceEEEEee-ceEEcCCCce
Q 008156 352 QILCIHLQ-RVSINEMGEL 369 (576)
Q Consensus 352 ~~L~IhL~-Rf~~~~~~~~ 369 (576)
--+..||+ ||.|+..|..
T Consensus 279 G~~~~h~k~r~~~n~RG~~ 297 (376)
T KOG2463|consen 279 GNGQTHFKKRFQWNNRGLQ 297 (376)
T ss_pred CceeEEeecccccccCcce
Confidence 56888998 9999877743
No 99
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=20.48 E-value=1.2e+02 Score=25.00 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=31.0
Q ss_pred ceeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeec--cccccCCcchh
Q 008156 226 GILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQL--ENYHCSHCWHI 293 (576)
Q Consensus 226 g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i--~~~~C~~C~~~ 293 (576)
|....+..|..|++...++.+...-.-+ .+ -.+++.|..=-..+.+ .+..|++|++.
T Consensus 16 g~~~~rf~C~tCpY~~~I~~ei~~r~~~--~~---------Kevd~vlgg~~a~~nv~~t~~~Cp~Cgh~ 74 (105)
T KOG2906|consen 16 GESCNRFSCRTCPYVFPISREISSRKYP--KL---------KEVDDVLGGDEAWENVDQTEATCPTCGHE 74 (105)
T ss_pred CCeEeeEEcCCCCceeeEeeeeeccccC--ch---------hhhhhhcCCcccccchhhccCcCCCCCCC
Confidence 5567899999999864444332221111 11 1444455432222222 24889999986
No 100
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.13 E-value=64 Score=21.23 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=7.5
Q ss_pred eEEecCCCCc
Q 008156 231 ILTCQSCLSQ 240 (576)
Q Consensus 231 ~i~C~~C~~~ 240 (576)
.+.|..|+..
T Consensus 2 ~i~Cp~C~~~ 11 (36)
T PF13717_consen 2 IITCPNCQAK 11 (36)
T ss_pred EEECCCCCCE
Confidence 4789999853
Done!