Query 008156
Match_columns 576
No_of_seqs 232 out of 1538
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 19:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 8.6E-66 3E-70 538.1 30.3 336 71-575 5-360 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 2E-64 6.8E-69 523.8 28.6 328 69-576 4-345 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 4.6E-64 1.6E-68 529.1 29.9 322 71-574 59-396 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 2.1E-63 7.1E-68 517.6 25.7 334 73-576 2-353 (355)
5 2ayn_A Ubiquitin carboxyl-term 100.0 2.6E-63 9E-68 526.1 21.1 367 70-575 10-395 (404)
6 1nb8_A Ubiquitin carboxyl-term 100.0 2.5E-62 8.5E-67 508.5 25.9 294 71-574 3-315 (353)
7 1vjv_A Ubiquitin carboxyl-term 100.0 2E-61 6.9E-66 513.2 27.2 359 70-574 20-414 (415)
8 3mhs_A Ubiquitin carboxyl-term 100.0 2.8E-60 9.6E-65 513.1 29.7 324 70-574 137-474 (476)
9 3ihp_A Ubiquitin carboxyl-term 100.0 2.5E-60 8.5E-65 539.3 27.0 246 68-394 338-628 (854)
10 2f1z_A Ubiquitin carboxyl-term 100.0 5E-59 1.7E-63 507.9 27.2 295 71-575 172-485 (522)
11 2vhf_A Ubiquitin carboxyl-term 100.0 5.8E-38 2E-42 313.4 17.4 101 72-177 7-113 (374)
12 3shq_A UBLCP1; phosphatase, hy 97.4 3.1E-05 1E-09 77.6 0.5 61 2-63 36-103 (320)
13 3mp2_A Non-structural protein 96.8 0.014 4.6E-07 53.8 12.5 69 73-172 12-80 (211)
14 1wgg_A Ubiquitin carboxyl-term 96.8 0.00013 4.4E-09 59.5 -0.9 46 3-54 40-90 (96)
15 2fe8_A PP1AB, ORF1AB, replicas 95.7 0.27 9.3E-06 48.2 15.4 72 74-172 102-174 (315)
16 1v5t_A 8430435I17RIK protein; 95.6 0.0011 3.7E-08 53.2 -1.8 41 3-43 40-86 (90)
17 2dzm_A FAS-associated factor 1 95.2 0.0023 8E-08 52.2 -1.0 31 3-34 41-71 (100)
18 1v86_A DNA segment, CHR 7, way 93.2 0.012 4.1E-07 47.5 -0.7 36 3-41 49-89 (95)
19 2lxa_A Ubiquitin-like protein 92.3 0.015 5.1E-07 46.1 -1.3 29 3-33 37-65 (87)
20 2kd0_A LRR repeats and ubiquit 92.2 0.015 5E-07 45.9 -1.5 30 3-34 44-73 (85)
21 4a20_A Ubiquitin-like protein 90.0 0.042 1.4E-06 44.5 -0.9 30 3-34 55-85 (98)
22 1wxv_A BAG-family molecular ch 89.8 0.034 1.2E-06 44.4 -1.6 30 3-34 44-74 (92)
23 1qmy_A Protease, leader protea 88.1 0.28 9.5E-06 41.4 2.8 33 73-105 12-45 (167)
24 2wyq_A HHR23A, UV excision rep 85.7 0.12 4.2E-06 40.2 -0.6 30 3-34 41-70 (85)
25 3v6c_B Ubiquitin; structural g 85.6 0.11 3.7E-06 41.3 -1.0 30 3-34 50-79 (91)
26 3b1l_X E3 ubiquitin-protein li 85.7 0.16 5.5E-06 38.5 0.0 30 3-34 33-62 (76)
27 4fbj_B NEDD8; effector-HOST ta 85.3 0.1 3.4E-06 41.3 -1.3 30 3-34 33-62 (88)
28 4eew_A Large proline-rich prot 85.2 0.11 3.9E-06 40.8 -1.0 30 3-34 50-79 (88)
29 2kk8_A Uncharacterized protein 85.0 0.1 3.4E-06 40.9 -1.4 30 3-34 43-73 (84)
30 3phx_B Ubiquitin-like protein 84.9 0.12 4.1E-06 39.7 -1.0 30 3-34 37-66 (79)
31 2hj8_A Interferon-induced 17 k 84.8 0.14 4.7E-06 40.4 -0.7 30 3-34 37-66 (88)
32 1uel_A HHR23B, UV excision rep 84.6 0.13 4.3E-06 41.3 -1.0 30 3-34 36-65 (95)
33 3m62_B UV excision repair prot 84.4 0.13 4.6E-06 42.2 -1.0 30 3-34 34-63 (106)
34 3m63_B Ubiquitin domain-contai 84.0 0.11 3.6E-06 42.4 -1.7 30 3-34 60-89 (101)
35 2bwf_A Ubiquitin-like protein 83.5 0.14 4.9E-06 38.9 -1.1 30 3-34 36-65 (77)
36 2kan_A Uncharacterized protein 83.0 0.12 4.1E-06 41.4 -1.8 30 3-34 47-77 (94)
37 4hcn_B Polyubiquitin, ubiquiti 82.5 0.17 5.7E-06 40.8 -1.1 30 3-34 55-84 (98)
38 1sif_A Ubiquitin; hydrophobic 82.1 0.17 6E-06 39.8 -1.1 30 3-34 42-71 (88)
39 3mtn_B UBA80, ubcep1, ubiquiti 82.0 0.19 6.3E-06 39.1 -1.0 30 3-34 36-65 (85)
40 3dbh_I NEDD8; cell cycle, acti 81.8 0.2 7E-06 39.2 -0.8 30 3-34 45-74 (88)
41 2dzi_A Ubiquitin-like protein 81.6 0.19 6.6E-06 38.6 -1.0 30 3-34 40-69 (81)
42 2faz_A Ubiquitin-like containi 81.2 0.18 6.1E-06 38.6 -1.3 30 3-34 37-66 (78)
43 3u5e_m 60S ribosomal protein L 80.7 0.33 1.1E-05 41.3 0.0 30 3-34 33-62 (128)
44 3n3k_B Ubiquitin; hydrolase, p 80.6 0.19 6.4E-06 39.1 -1.4 30 3-34 36-65 (85)
45 1we6_A Splicing factor, putati 80.6 0.27 9.3E-06 40.6 -0.5 30 3-34 64-93 (111)
46 2l7r_A Ubiquitin-like protein 79.9 0.21 7.3E-06 39.8 -1.4 30 3-34 50-79 (93)
47 1wju_A NEDD8 ultimate buster-1 79.9 0.19 6.7E-06 40.6 -1.6 29 4-34 53-81 (100)
48 3k9o_B Ubiquitin, UBB+1; E2-25 79.8 0.24 8.2E-06 39.6 -1.1 30 3-34 34-63 (96)
49 1ndd_A NEDD8, protein (ubiquit 79.5 0.26 8.7E-06 37.2 -1.0 30 3-34 33-62 (76)
50 1yqb_A Ubiquilin 3; structural 79.4 0.22 7.5E-06 40.4 -1.4 30 3-34 54-83 (100)
51 2klc_A Ubiquilin-1; ubiquitin- 79.4 0.22 7.6E-06 40.4 -1.4 30 3-34 57-86 (101)
52 1v5o_A 1700011N24RIK protein; 78.8 0.25 8.6E-06 40.1 -1.2 30 3-34 44-74 (102)
53 1wgd_A Homocysteine-responsive 78.8 0.23 7.9E-06 39.5 -1.5 28 5-34 46-75 (93)
54 1wx8_A Riken cDNA 4931431F19; 78.6 0.25 8.5E-06 39.6 -1.3 30 3-34 49-78 (96)
55 4dwf_A HLA-B-associated transc 78.4 0.29 9.8E-06 38.6 -1.0 30 3-34 38-67 (90)
56 3a9j_A Ubiquitin; protein comp 78.2 0.28 9.7E-06 36.9 -1.1 30 3-34 33-62 (76)
57 1wy8_A NP95-like ring finger p 77.6 0.26 8.9E-06 38.7 -1.5 30 3-34 42-71 (89)
58 3vdz_A Ubiquitin-40S ribosomal 77.3 0.29 9.8E-06 40.5 -1.3 30 3-34 68-97 (111)
59 3u5c_f 40S ribosomal protein S 76.2 0.53 1.8E-05 41.3 0.0 30 3-34 33-62 (152)
60 1yx5_B Ubiquitin; proteasome, 75.9 0.41 1.4E-05 38.4 -0.8 30 3-34 33-62 (98)
61 2kdi_A Ubiquitin, vacuolar pro 75.2 0.36 1.2E-05 40.1 -1.3 30 3-34 42-71 (114)
62 1uh6_A Ubiquitin-like 5; beta- 74.9 0.36 1.2E-05 39.0 -1.3 29 4-34 62-90 (100)
63 1wh3_A 59 kDa 2'-5'-oligoadeny 74.3 0.36 1.2E-05 37.7 -1.5 30 3-34 40-69 (87)
64 1ttn_A DC-UBP, dendritic cell- 73.5 0.41 1.4E-05 39.2 -1.4 30 3-34 56-85 (106)
65 1we7_A SF3A1 protein; structur 71.5 0.42 1.4E-05 39.7 -1.8 30 3-34 68-97 (115)
66 1wx7_A Ubiquilin 3; ubiquitin- 70.7 0.43 1.5E-05 39.0 -1.9 30 3-34 49-78 (106)
67 3u30_A Ubiquitin, linear DI-ub 70.2 0.63 2.1E-05 41.7 -1.1 30 3-34 53-82 (172)
68 2daf_A FLJ35834 protein; hypot 69.5 0.42 1.4E-05 39.6 -2.1 30 3-34 49-78 (118)
69 1x1m_A Ubiquitin-like protein 68.2 0.51 1.7E-05 38.7 -2.0 28 5-34 61-89 (107)
70 3plu_A Ubiquitin-like modifier 67.7 0.71 2.4E-05 36.6 -1.1 29 4-34 55-83 (93)
71 3l0w_B Monoubiquitinated proli 67.6 0.68 2.3E-05 41.4 -1.4 30 3-34 33-62 (169)
72 2ojr_A Ubiquitin; lanthide-bin 67.2 0.6 2E-05 38.5 -1.7 30 3-34 68-97 (111)
73 1j8c_A Ubiquitin-like protein 66.9 0.52 1.8E-05 39.8 -2.2 30 3-34 64-93 (125)
74 4b6w_A Tubulin-specific chaper 66.5 1.1 3.8E-05 35.0 -0.2 31 2-34 36-73 (86)
75 2fnj_B Transcription elongatio 65.9 0.73 2.5E-05 38.4 -1.4 30 3-34 34-63 (118)
76 4ajy_B Transcription elongatio 63.3 0.9 3.1E-05 37.7 -1.3 31 3-35 34-64 (118)
77 2dzj_A Synaptic glycoprotein S 62.1 1.5 5E-05 34.5 -0.3 32 3-34 47-78 (88)
78 3b08_A Polyubiquitin-C, ubiqui 62.0 1.1 3.8E-05 38.8 -1.1 30 3-34 33-62 (152)
79 2kdb_A Homocysteine-responsive 59.5 0.94 3.2E-05 36.5 -1.9 30 3-34 59-91 (99)
80 3rt3_B Ubiquitin-like protein 57.4 1.8 6.3E-05 37.9 -0.5 31 3-34 35-66 (159)
81 2uyz_B Small ubiquitin-related 56.4 1.3 4.5E-05 33.6 -1.5 29 4-34 37-65 (79)
82 1v6e_A Cytoskeleton-associated 55.3 2.1 7.1E-05 34.0 -0.5 30 3-34 41-77 (95)
83 2kjr_A CG11242; UBL, ubiquitin 52.4 1.5 5E-05 35.1 -1.8 30 3-34 50-85 (95)
84 1oqy_A HHR23A, UV excision rep 51.6 2 6.9E-05 43.3 -1.4 30 3-34 43-72 (368)
85 4dbg_A Ranbp-type and C3HC4-ty 48.6 2.2 7.5E-05 34.7 -1.4 29 4-34 60-88 (105)
86 1wyw_B Ubiquitin-like protein 46.5 2.4 8.1E-05 33.8 -1.5 29 4-34 55-83 (97)
87 1qmy_A Protease, leader protea 43.6 19 0.00066 30.4 3.6 41 502-561 108-150 (167)
88 1se9_A Ubiquitin family; ubiqu 41.2 4.1 0.00014 34.2 -0.8 30 3-34 55-86 (126)
89 3a43_A HYPD, hydrogenase nicke 40.7 23 0.00079 30.1 3.8 14 227-240 66-79 (139)
90 2kj6_A Tubulin folding cofacto 40.2 3.2 0.00011 33.2 -1.6 30 3-34 49-85 (97)
91 1t0y_A Tubulin folding cofacto 37.3 4.2 0.00014 33.9 -1.4 30 3-34 40-76 (122)
92 2kzr_A Ubiquitin thioesterase 36.9 5.5 0.00019 30.8 -0.7 32 3-34 33-67 (86)
93 2oxg_Z SOXZ protein; immunoglo 36.4 87 0.003 25.2 6.5 56 498-574 17-82 (108)
94 2gow_A HCG-1 protein, ubiquiti 35.6 5.8 0.0002 33.3 -0.8 30 3-34 56-87 (125)
95 1v8h_A Sulfur oxidation protei 29.4 1.3E+02 0.0045 24.1 6.4 56 498-574 16-81 (107)
96 1wf9_A NPL4 family protein; be 26.8 12 0.0004 30.3 -0.4 30 3-34 40-84 (107)
97 2xzm_9 RPS31E; ribosome, trans 23.2 17 0.00059 32.7 0.0 25 3-29 33-57 (189)
98 1wgh_A Ubiquitin-like 3, HCG-1 21.9 10 0.00034 31.3 -1.7 29 4-34 56-86 (116)
99 3o65_A Putative ataxin-3-like 20.2 64 0.0022 28.9 3.1 51 502-572 109-167 (191)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.6e-66 Score=538.07 Aligned_cols=336 Identities=26% Similarity=0.423 Sum_probs=266.0
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccC-----CCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC-----EEPDEDLPLTVALASLLEELCLVGETRLVLSPQKV 145 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~-----~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~ 145 (576)
.++++||.|+||||||||+||||+++|+|+++|....... .......+++.+|+.||..||. +....++|..|
T Consensus 5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~--~~~~~i~P~~~ 82 (367)
T 2y6e_A 5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWS--GRDAHVAPRMF 82 (367)
T ss_dssp CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTS--SSCSEECCHHH
T ss_pred CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHc--CCCCCcCHHHH
Confidence 4589999999999999999999999999999998743221 1122356899999999999975 34478999999
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhccccccc
Q 008156 146 MLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFD 225 (576)
Q Consensus 146 ~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~ 225 (576)
+.+++...+.|.+++||||||||.+||+.|+++++.....+.....+..+.+.... ....+......-.+.|.++|+
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~---a~~~w~~~~~~~~s~i~~~F~ 159 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVV---AKEAWENHRLRNDSVIVDTFH 159 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHH---HHHHHHHHHHHCCSHHHHHHC
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHH---HHHHHHHHHHhcCCccccccC
Confidence 99999999999999999999999999999999987654432211111100000000 000000000111234788999
Q ss_pred ceeeceEEecCCCCcccccccccceeecccCCCCCC-----------CCCCCCCHHHHHhhhcCeeeccc---cccCCcc
Q 008156 226 GILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGS-----------TIPFGCTLEDCLKQFLTAEQLEN---YHCSHCW 291 (576)
Q Consensus 226 g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~-----------~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~ 291 (576)
|.+.++++|..|++ .+.++|+|++|+|+++..... ......+|++||+.|+.+|.+++ |.|++|+
T Consensus 160 G~l~s~~~C~~C~~-~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~ 238 (367)
T 2y6e_A 160 GLFKSTLVCPECAK-VSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCK 238 (367)
T ss_dssp EEEEEEEECTTTCC-EEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTT
T ss_pred cEEeeeEEeCCCCC-EeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCC
Confidence 99999999999996 699999999999965543211 12345699999999999999985 9999999
Q ss_pred hhhhhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceee
Q 008156 292 HIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVK 371 (576)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~K 371 (576)
.. +.+.|+..|.++|+||+|||+||.|+.. ...|
T Consensus 239 ~~---------------------------------------------~~a~K~~~i~~lP~vL~i~LkRF~~~~~-~~~K 272 (367)
T 2y6e_A 239 KH---------------------------------------------QQATKKFDLWSLPKILVVHLKRFSYNRY-WRDK 272 (367)
T ss_dssp EE---------------------------------------------ECCEEEEEEEECCSEEEEEEECEEECSS-CEEE
T ss_pred CC---------------------------------------------ceEEEEEEEecCCcEEEEEEeCeeecCc-ccee
Confidence 87 8999999999999999999999999754 4689
Q ss_pred eccceeecc-ccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCcccc
Q 008156 372 IWGHIAFPL-ILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDEL 450 (576)
Q Consensus 372 i~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (576)
+.++|.||. .|||.+|+....
T Consensus 273 ~~~~v~fp~~~Ldl~~~~~~~~---------------------------------------------------------- 294 (367)
T 2y6e_A 273 LDTVVEFPIRGLNMSEFVCNLS---------------------------------------------------------- 294 (367)
T ss_dssp CCCCEECCSSCEECGGGBSCSS----------------------------------------------------------
T ss_pred cCceEEecCCcCChhhhccCCC----------------------------------------------------------
Confidence 999999997 699999995420
Q ss_pred CCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCC
Q 008156 451 GCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHE 530 (576)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~ 530 (576)
.....|+|+|||+|.|++++|||+||+|..
T Consensus 295 ---------------------------------------------~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~----- 324 (367)
T 2y6e_A 295 ---------------------------------------------ARPYVYDLIAVSNHYGAMGVGHYTAYAKNK----- 324 (367)
T ss_dssp ---------------------------------------------SCCCEEEEEEEEEEECSSSSCEEEEEEECT-----
T ss_pred ---------------------------------------------CCCceEEEEEEeecCCCCCCCeeeEEEEcC-----
Confidence 123479999999999999999999999963
Q ss_pred CCCCCCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEeccC
Q 008156 531 ENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERIIE 575 (576)
Q Consensus 531 ~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv~~ 575 (576)
.+++||+|||+.|++|++++|+...||||||+|++.
T Consensus 325 ---------~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 325 ---------LNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 360 (367)
T ss_dssp ---------TTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred ---------CCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCC
Confidence 478999999999999999999999999999999874
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=2e-64 Score=523.82 Aligned_cols=328 Identities=28% Similarity=0.411 Sum_probs=267.7
Q ss_pred hccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCC---CCCCCChHHHHHHHHHHHHHhcCCCCceeChHHH
Q 008156 69 EKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECE---EPDEDLPLTVALASLLEELCLVGETRLVLSPQKV 145 (576)
Q Consensus 69 ~~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~---~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~ 145 (576)
+..++++||.|+||||||||+||+|+++|+|+++++....... ......+++.+|+.||..||. ......++|..|
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~~~~~~p~~~ 82 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT-SSPNDVVSPSEF 82 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTT-CCTTCEECCHHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHc-CCCCCccCHHHH
Confidence 3456899999999999999999999999999999987543211 123567899999999999984 455689999999
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhh-------hh
Q 008156 146 MLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRW-------RK 218 (576)
Q Consensus 146 ~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 218 (576)
+.+++...+.|.++.||||||||.+||+.|++++............+... ..........| .+
T Consensus 83 ~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~s 152 (348)
T 3nhe_A 83 KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDH----------LPDDEKGRQMWRKYLEREDS 152 (348)
T ss_dssp HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTT----------SCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCcccccc----------CCchHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999997654432221111100 00011111122 23
Q ss_pred cccccccceeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhh
Q 008156 219 HFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAA 295 (576)
Q Consensus 219 ~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~ 295 (576)
.|.++|+|.+.++++|..|++ .+.++|+|++|+|+++... ...++|++||+.|+..|.+++ |.|++|+..
T Consensus 153 ~i~~~F~g~~~~~~~C~~C~~-~s~~~e~f~~LsL~i~~~~----~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~-- 225 (348)
T 3nhe_A 153 RIGDLFVGQLKSSLTCTDCGY-CSTVFDPFWDLSLPIAKRG----YPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGR-- 225 (348)
T ss_dssp HHHHHHCEEEEEEEEETTTCC-EEEEEEEESSEEECCCSSC----SSCEEHHHHHHHHHSCEEECGGGCCEETTTTEE--
T ss_pred ccccccceEEEEEEEcCCCCC-EeeeeccceEEeeeCCCcc----cCCCCHHHHHHHhcCceEecCCCceECCCCCCc--
Confidence 478899999999999999996 6999999999999654432 224699999999999999987 899999987
Q ss_pred hhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccc
Q 008156 296 IKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGH 375 (576)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~ 375 (576)
+.+.|+..|.++|+||+|||+||.|+. +...|+...
T Consensus 226 -------------------------------------------~~~~k~~~i~~lP~vL~i~lkRf~~~~-~~~~K~~~~ 261 (348)
T 3nhe_A 226 -------------------------------------------KRCIKKFSIQRFPKILVLHLKRFSESR-IRTSKLTTF 261 (348)
T ss_dssp -------------------------------------------CCEEEEEEEEECCSEEEEEECCBCCCS-SCCCBCCCC
T ss_pred -------------------------------------------ccEEEEEEeecCCceEEEEEEcccccC-CceeecCcc
Confidence 899999999999999999999998865 457899999
Q ss_pred eeecc-ccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCcc
Q 008156 376 IAFPL-ILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTA 454 (576)
Q Consensus 376 V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (576)
|.||. .|||.+|+...
T Consensus 262 v~fp~~~ldl~~~~~~~--------------------------------------------------------------- 278 (348)
T 3nhe_A 262 VNFPLRDLDLREFASEN--------------------------------------------------------------- 278 (348)
T ss_dssp EECCSSCEECGGGBCTT---------------------------------------------------------------
T ss_pred eeccCCcCCHhhhcCCC---------------------------------------------------------------
Confidence 99995 69999998432
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCC
Q 008156 455 HEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPN 534 (576)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~ 534 (576)
.....|+|+|||+|.|++++|||+||+|.+
T Consensus 279 -----------------------------------------~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~--------- 308 (348)
T 3nhe_A 279 -----------------------------------------TNHAVYNLYAVSNHSGTTMGGHYTAYCRSP--------- 308 (348)
T ss_dssp -----------------------------------------CCCCEEEEEEEEEEEECSSCEEEEEEEECT---------
T ss_pred -----------------------------------------CCCCcEEEEEEEEccCCCCCcccEEEEccC---------
Confidence 123479999999999999999999999963
Q ss_pred CCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEeccCC
Q 008156 535 EHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERIIES 576 (576)
Q Consensus 535 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv~~~ 576 (576)
.+++||+|||+.|++|++++|....||||||+|++.+
T Consensus 309 -----~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 309 -----GTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp -----TTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC--
T ss_pred -----CCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCC
Confidence 5789999999999999999999999999999998753
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=4.6e-64 Score=529.13 Aligned_cols=322 Identities=28% Similarity=0.463 Sum_probs=262.0
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhcc-----CCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGE-----CEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKV 145 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~-----~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~ 145 (576)
.++++||.|+||||||||+||||+++|+|+++|...... .........++.+|..|+..||.. ....++|..|
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~--~~~~i~P~~f 136 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTG--QYRYISPKDF 136 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHS--CEEEECCHHH
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcC--CCceECHHHH
Confidence 467999999999999999999999999999999864321 111224568999999999999863 3578999999
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhh-------hh
Q 008156 146 MLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRW-------RK 218 (576)
Q Consensus 146 ~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 218 (576)
+.+++...+.|.+++||||||||.+||+.|++++................ .+ ........| .+
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~-------~~---~~~~a~~~w~~~~~~~~s 206 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDH-------LD---DFKAAEHAWQKHKQLNES 206 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TT-------SC---HHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccc-------cc---hhhHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999987653321111000000 00 001111122 23
Q ss_pred cccccccceeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhh
Q 008156 219 HFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAA 295 (576)
Q Consensus 219 ~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~ 295 (576)
.|.++|+|++.++++|..|++ .+.++|+|++|+|+++.. ...+|++||+.|+.+|.+++ |.|++|+..
T Consensus 207 ~I~~lF~G~l~s~i~C~~C~~-~s~~~e~f~~LsL~ip~~------~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~-- 277 (396)
T 2gfo_A 207 IIVALFQGQFKSTVQCLTCHK-KSRTFEAFMYLSLPLAST------SKCTLQDCLRLFSKEEKLTDNNRFYCSHCRAR-- 277 (396)
T ss_dssp HHHHHHCEEEEEEEEETTTCC-EEEEEEEESSEEECCSCS------SEEEHHHHHHHHTSCEEECSTTCEEETTTTEE--
T ss_pred ccchhhCcEEEEEEEeCCCCc-eecccccceeeeeccccc------ccCCHHHHHHHhCCcccccCCcccccCCcccc--
Confidence 478899999999999999996 799999999999965432 24599999999999999986 999999987
Q ss_pred hhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccc
Q 008156 296 IKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGH 375 (576)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~ 375 (576)
+.+.|+..|.++|+||+|||+||.|+..+ ..|+...
T Consensus 278 -------------------------------------------~~a~k~~~i~~lP~vLiihLkRF~~~~~~-~~K~~~~ 313 (396)
T 2gfo_A 278 -------------------------------------------RDSLKKIEIWKLPPVLLVHLKRFSYDGRW-KQKLQTS 313 (396)
T ss_dssp -------------------------------------------ECEEEEEEEEECCSEEEEEECCEEECSSS-EEECCCE
T ss_pred -------------------------------------------cceEEEEEEecCCcEEEEEecceeccCcc-ceecCce
Confidence 88999999999999999999999998654 6899999
Q ss_pred eeecc-ccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCcc
Q 008156 376 IAFPL-ILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTA 454 (576)
Q Consensus 376 V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (576)
|.||. .|||.+|+....
T Consensus 314 v~fp~~~Ldl~~~~~~~~-------------------------------------------------------------- 331 (396)
T 2gfo_A 314 VDFPLENLDLSQYVIGPK-------------------------------------------------------------- 331 (396)
T ss_dssp EECCSSCBCCGGGBCSCC--------------------------------------------------------------
T ss_pred EecchhhccccccccCCC--------------------------------------------------------------
Confidence 99996 699999984320
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCC
Q 008156 455 HEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPN 534 (576)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~ 534 (576)
.....|+|+|||+|.|++++|||+||+|..
T Consensus 332 -----------------------------------------~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~--------- 361 (396)
T 2gfo_A 332 -----------------------------------------NNLKKYNLFSVSNHYGGLDGGHYTAYCKNA--------- 361 (396)
T ss_dssp -----------------------------------------SSCCCBEEEEEEEEESCTTTCEEEEEEEET---------
T ss_pred -----------------------------------------CCCceEEEEEEEEecCCCCCCceEEEEcCC---------
Confidence 112369999999999999999999999963
Q ss_pred CCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEecc
Q 008156 535 EHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERII 574 (576)
Q Consensus 535 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv~ 574 (576)
.+++||+|||+.|++|++++|....||||||+|++
T Consensus 362 -----~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 362 -----ARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp -----TTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred -----CCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 46899999999999999999999999999999974
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=2.1e-63 Score=517.58 Aligned_cols=334 Identities=29% Similarity=0.397 Sum_probs=254.6
Q ss_pred CCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhcc--CCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 73 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGE--CEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 73 ~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~--~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
+.+||.|+||||||||+||+|+++|+|+++++..... ........+++.+|+.||..||.. .....++|..|+.+++
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHP-DSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSC-SSCCCBCCHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHH
Confidence 6899999999999999999999999999999864321 111224568999999999999863 2346899999999999
Q ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhh----h-hhchhhhhhhHHhhh-------hhh
Q 008156 151 LYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASC----R-ILSLKRREVQSEQKR-------WRK 218 (576)
Q Consensus 151 ~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~-------~~~ 218 (576)
...+.|.++.||||||||.+||+.|++++............+....... . ...+........... ..+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999976543221111100000000 0 000000000111111 224
Q ss_pred cccccccceeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhh
Q 008156 219 HFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAA 295 (576)
Q Consensus 219 ~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~ 295 (576)
.|.++|+|.+.+.++|..|++ .+.+.|+|++|+|+++... ......+|++||+.|+..|.+++ |.|++|+..
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~-~s~~~e~f~~lsl~i~~~~--~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~-- 235 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGY-RSTTFEVFCDLSLPIPKKG--FAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQK-- 235 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCC-EEEEEEEESSEEECCCC---------CBHHHHHHHHHCCEEECGGGCCCCSSSCCC--
T ss_pred cccccccEEEEeeEEeCCCCC-CceeeccceeecccCCccc--cccCccCHHHHHHHhCCccccCCCCCeeCCCCCCc--
Confidence 478899999999999999997 6899999999999654321 11245699999999999999987 999999987
Q ss_pred hhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccc
Q 008156 296 IKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGH 375 (576)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~ 375 (576)
+.+.|+..|.++|+||+|||+||.++. +...|+..+
T Consensus 236 -------------------------------------------~~a~k~~~i~~lP~vL~i~lkRF~~~~-~~~~K~~~~ 271 (355)
T 3i3t_A 236 -------------------------------------------TRSTKKLTVQRFPRILVLHLNRFSASR-GSIKKSSVG 271 (355)
T ss_dssp -------------------------------------------CCEEEEEEEEECCSEEEEEECCEECCS-SCCEECCCC
T ss_pred -------------------------------------------cceEEEEEcccCChheEEEhhheecCC-CCceECCcc
Confidence 899999999999999999999999864 457899999
Q ss_pred eeecc-ccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCcc
Q 008156 376 IAFPL-ILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTA 454 (576)
Q Consensus 376 V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (576)
|.||. .|||.+|+...
T Consensus 272 v~fp~~~l~l~~~~~~~--------------------------------------------------------------- 288 (355)
T 3i3t_A 272 VDFPLQRLSLGDFASDK--------------------------------------------------------------- 288 (355)
T ss_dssp CBCCSSCEECGGGBC-----------------------------------------------------------------
T ss_pred eeCCccccCchhhccCC---------------------------------------------------------------
Confidence 99995 59999998431
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCC
Q 008156 455 HEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPN 534 (576)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~ 534 (576)
.....|+|+|||+|.|++++|||+||+|.
T Consensus 289 -----------------------------------------~~~~~Y~L~avv~H~G~~~~GHY~~~~~~---------- 317 (355)
T 3i3t_A 289 -----------------------------------------AGSPVYQLYALCNHSGSVHYGHYTALCRC---------- 317 (355)
T ss_dssp -------------------------------------------CCEEEEEEEEEEEEETTEEEEEEEEEE----------
T ss_pred -----------------------------------------CCCcceEEEEEEEecCCCCCCeEEEEEEc----------
Confidence 12337999999999999999999999995
Q ss_pred CCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEeccCC
Q 008156 535 EHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERIIES 576 (576)
Q Consensus 535 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv~~~ 576 (576)
.+.||+|||+.|++|++++|+...||||||+|++++
T Consensus 318 ------~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 318 ------QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp ------TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred ------CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCC
Confidence 467999999999999999999999999999999753
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2.6e-63 Score=526.12 Aligned_cols=367 Identities=20% Similarity=0.242 Sum_probs=260.7
Q ss_pred ccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccC--C-CCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHH
Q 008156 70 KLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC--E-EPDEDLPLTVALASLLEELCLVGETRLVLSPQKVM 146 (576)
Q Consensus 70 ~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~--~-~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~ 146 (576)
....++||.|+||||||||+||||+++|+|+++|+.+.... . ......+++++|+.||..|+... .+++|..|+
T Consensus 10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~ 86 (404)
T 2ayn_A 10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS---SSIPPIILL 86 (404)
T ss_dssp -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHH
T ss_pred ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHH
Confidence 35589999999999999999999999999999998865431 1 11234689999999999998743 699999999
Q ss_pred HHHHHHhhccC------CCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcc
Q 008156 147 LAMELYIQNFN------LTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHF 220 (576)
Q Consensus 147 ~~l~~~~~~f~------~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (576)
.+++...+.|. ++.||||||||.+||+.|++++......... +.. .............+.|
T Consensus 87 ~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~---e~~----------~~~~~~~~~~~~~s~i 153 (404)
T 2ayn_A 87 QFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVK---ETD----------SSSASAATPSKKKSLI 153 (404)
T ss_dssp HHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC-------------------------------CCHH
T ss_pred HHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCccc---ccc----------hhhhhhhhccccCchh
Confidence 99999999998 4899999999999999999998653221100 000 0000000001112347
Q ss_pred cccccceeeceEEecCCCCcc-cccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhh
Q 008156 221 FGPFDGILGSILTCQSCLSQI-SLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYL 299 (576)
Q Consensus 221 ~~~F~g~~~s~i~C~~C~~~~-s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l 299 (576)
..+|+|.+.++++|..|++.. +.++|+|++|+|++... ..+|++||+.|+. |.++ +.|++|+..
T Consensus 154 ~~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~-------~~~l~~~L~~~~~-e~l~-~~c~~c~~~------ 218 (404)
T 2ayn_A 154 DQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQE-------VKYLFTGLKLRLQ-EEIT-KQSPTLQRN------ 218 (404)
T ss_dssp HHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS-------CCBHHHHHHHTTE-ECCC-CEETTTTEE------
T ss_pred hhhccEEEEEEEEecCCCCccCceeeccCceEEeecCCC-------cccHHHHHHHhcc-ccee-ecchhhCCc------
Confidence 889999999999999999743 47999999999965432 1389999999986 6666 899999976
Q ss_pred ccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-Cceeeeccceee
Q 008156 300 SITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAF 378 (576)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~f 378 (576)
+.+.|+..|.+||+||+|||+||.|+.. +...|+.++|.|
T Consensus 219 ---------------------------------------~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~f 259 (404)
T 2ayn_A 219 ---------------------------------------ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKF 259 (404)
T ss_dssp ---------------------------------------CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBC
T ss_pred ---------------------------------------cceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceecc
Confidence 8899999999999999999999999875 567899999999
Q ss_pred ccccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCcccccc
Q 008156 379 PLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKE 458 (576)
Q Consensus 379 P~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (576)
|..|||.+|+..+.+.+..+... ..... + ....+ ......+ ..+ ...++.
T Consensus 260 P~~Ldl~~~~~~~~~~~~~~~~~---~~~~~-~--~~~~~-----~~~~~~~---------------~~~-~~~~~~--- 309 (404)
T 2ayn_A 260 PLMLDMYELCTPELQEKMVSFRS---KFKDL-E--DKKVN-----QQPNTSD---------------KKS-SPQKEV--- 309 (404)
T ss_dssp CSEEECGGGBCHHHHHHTTTTTG---GGTCT-T--C--------------------------------------------
T ss_pred CceeEHhHhcChhhhhhcchhhh---HHhhh-h--cccch-----hhhhhcc---------------ccc-cccccc---
Confidence 99999999997643221111100 00000 0 00000 0000000 000 000000
Q ss_pred ccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCC
Q 008156 459 FRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHF 537 (576)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~ 537 (576)
..+ ... ...+........|+|+|||+|.|. +++|||+||||.
T Consensus 310 ---------------~~e-~~~--------~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~------------- 352 (404)
T 2ayn_A 310 ---------------KYE-PFS--------FADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR------------- 352 (404)
T ss_dssp -----------------C-CCC--------CSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE-------------
T ss_pred ---------------ccc-ccc--------cccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEEC-------------
Confidence 000 000 000112345678999999999997 999999999996
Q ss_pred CCCCCceEEEeCCceeeechhhhccCc-------eEEEEEEeccC
Q 008156 538 ETPLTHWFCISDSQVYSVSVNDVLAAE-------ASLLFYERIIE 575 (576)
Q Consensus 538 ~~~~~~W~~~nD~~V~~v~~~~v~~~~-------aYlLfY~rv~~ 575 (576)
.+++||+|||+.|++|++++|+... ||||||+|++.
T Consensus 353 --~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 353 --KQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRV 395 (404)
T ss_dssp --ETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC--
T ss_pred --CCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCC
Confidence 3789999999999999999999876 99999999863
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=2.5e-62 Score=508.49 Aligned_cols=294 Identities=20% Similarity=0.268 Sum_probs=245.3
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
.++++||.|+||||||||+||||+++|+|++++...... ......++..+|+.||..|+... .++.|..|+.+++
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~ 77 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG 77 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHHT
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC--CCcccccHHHHHHHHHHHHhhcC---CCCCCHHHHhhcC
Confidence 357999999999999999999999999999999765322 12245689999999999998643 4789999988875
Q ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeec
Q 008156 151 LYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGS 230 (576)
Q Consensus 151 ~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s 230 (576)
. +.|.++.||||||||.+||+.|++++..... .+.|.++|+|.+.+
T Consensus 78 ~--~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~~--------------------------------~s~i~~~F~g~~~~ 123 (353)
T 1nb8_A 78 W--ETLDSFMQHDVQELCRVLLDNVENKMKGTCV--------------------------------EGTIPKLFRGKMVS 123 (353)
T ss_dssp C--CBTTTTTTSCHHHHHHHHHHHHHHHTTTSTT--------------------------------TTHHHHHHCEEEEE
T ss_pred C--CCCCcccchhHHHHHHHHHHHHHHHhcCCCc--------------------------------cchhhhhceeEEEE
Confidence 3 7799999999999999999999998753210 12267899999999
Q ss_pred eEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHH
Q 008156 231 ILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEM 307 (576)
Q Consensus 231 ~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~ 307 (576)
+++|..|++ .+.+.|+|++|+|+++ ...+|.++|+.|+.+|.+++ |.|+.|+.
T Consensus 124 ~i~C~~C~~-~s~~~e~f~~LsL~i~--------~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~~--------------- 179 (353)
T 1nb8_A 124 YIQCKEVDY-RSDRREDYYDIQLSIK--------GKKNIFESFVDYVAVEQLDGDNKYDAGEHGL--------------- 179 (353)
T ss_dssp EEEESSSCC-EEEEEEEESCEEECCT--------TCSBHHHHHHHHTCCEEECTTTCEECGGGCE---------------
T ss_pred EEEeccCCC-eeceeeeeEEEEEEEC--------CCcchHHHHHHhhCccccCCCccccCCcCcc---------------
Confidence 999999997 6889999999999543 23489999999999999986 88999875
Q ss_pred HHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-CceeeeccceeeccccccCc
Q 008156 308 EIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDLFP 386 (576)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl~~ 386 (576)
+.+.|+..|.++|+||+|||+||.|+.. +...|+.++|.||+.|||.+
T Consensus 180 -------------------------------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~ 228 (353)
T 1nb8_A 180 -------------------------------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 228 (353)
T ss_dssp -------------------------------ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGG
T ss_pred -------------------------------EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhh
Confidence 7899999999999999999999999874 56789999999999999999
Q ss_pred CccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCC
Q 008156 387 FVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILP 466 (576)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (576)
|+....
T Consensus 229 ~~~~~~-------------------------------------------------------------------------- 234 (353)
T 1nb8_A 229 FLQKTD-------------------------------------------------------------------------- 234 (353)
T ss_dssp GBSSCC--------------------------------------------------------------------------
T ss_pred hhcccC--------------------------------------------------------------------------
Confidence 994310
Q ss_pred CCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEE
Q 008156 467 PTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFC 546 (576)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~ 546 (576)
......|+|+|||+|.|.+++|||+||+|.. .+++||+
T Consensus 235 ----------------------------~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~--------------~~~~W~~ 272 (353)
T 1nb8_A 235 ----------------------------PKDPANYILHAVLVHSGDNHGGHYVVYLNPK--------------GDGKWCK 272 (353)
T ss_dssp ----------------------------TTSCCEEEEEEEEEEESSTTCCCEEEEECTT--------------SSSCCEE
T ss_pred ----------------------------CCCCceEEEEEEEEEeCCCCCcEEEEEEecC--------------CCCCEEE
Confidence 0123479999999999999999999999952 5789999
Q ss_pred EeCCceeeechhhhcc---------------CceEEEEEEecc
Q 008156 547 ISDSQVYSVSVNDVLA---------------AEASLLFYERII 574 (576)
Q Consensus 547 ~nD~~V~~v~~~~v~~---------------~~aYlLfY~rv~ 574 (576)
|||+.|++|++++|+. ..||||||+|.+
T Consensus 273 fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~ 315 (353)
T 1nb8_A 273 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 315 (353)
T ss_dssp EETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETT
T ss_pred EECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECc
Confidence 9999999999999874 469999999976
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2e-61 Score=513.21 Aligned_cols=359 Identities=19% Similarity=0.204 Sum_probs=252.1
Q ss_pred ccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCC-------CChHHHHHHHHHHHHHhcCCCCceeCh
Q 008156 70 KLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDE-------DLPLTVALASLLEELCLVGETRLVLSP 142 (576)
Q Consensus 70 ~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~-------~~~l~~~L~~L~~~l~~~~~~~~~i~p 142 (576)
....++||.|+||||||||+||+|+++|+|+++|+.+......... ..+++.+|+.||..|+. +...+++|
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~--~~~~~v~p 97 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQN--KSFKSVLP 97 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHC--C-CCEECC
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhc--CCCCccCH
Confidence 3458999999999999999999999999999999986544322211 34899999999999975 34479999
Q ss_pred HHHHHHHHHHhhccC-------CCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhh
Q 008156 143 QKVMLAMELYIQNFN-------LTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKR 215 (576)
Q Consensus 143 ~~~~~~l~~~~~~f~-------~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (576)
..|+.+++..++.|. ++.||||||||.+||+.|++++..
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------- 143 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------- 143 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----------------------------------
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----------------------------------
Confidence 999999999999998 799999999999999999999842
Q ss_pred hhhcccccccceeeceEEecCCCCcc-cccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccccccCCcchhh
Q 008156 216 WRKHFFGPFDGILGSILTCQSCLSQI-SLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIA 294 (576)
Q Consensus 216 ~~~~i~~~F~g~~~s~i~C~~C~~~~-s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~ 294 (576)
+.|..+|+ .+.++++|..|++.. +.+.|+|++|+|++.... .+|++||+.|+. |.++ +.|++|+..
T Consensus 144 --~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~-------~~l~~~L~~~~~-e~i~-~~c~~c~~~- 210 (415)
T 1vjv_A 144 --KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTT-------NFMRNGLLEGLN-EKIE-KRSDLTGAN- 210 (415)
T ss_dssp --HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTC-------CBHHHHHHHHHE-EC----------CC-
T ss_pred --chHHHHHH-hheEEEEECCCCCCccccccccceeeeecccccc-------chHHHHHHHHhh-hhhh-hcccccCCc-
Confidence 12778999 999999999999643 369999999999654321 389999999997 5566 899999976
Q ss_pred hhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-Cceeeec
Q 008156 295 AIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIW 373 (576)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~ 373 (576)
+.+.|+..|.+||+||+|||+||.|+.. +...|+.
T Consensus 211 --------------------------------------------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~ 246 (415)
T 1vjv_A 211 --------------------------------------------SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKIL 246 (415)
T ss_dssp --------------------------------------------CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECC
T ss_pred --------------------------------------------ccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhc
Confidence 8899999999999999999999999875 5679999
Q ss_pred cceeeccccccCcCccCCCCCCCchhHH-hhhhhccccCC------CCCc---cccccccchhh--hhhhcccCCCCCCC
Q 008156 374 GHIAFPLILDLFPFVKSGVGINDLDESW-QRGQAKVLNER------PSSS---LNHVNRKYDAK--VLNSIYGLTGKNNH 441 (576)
Q Consensus 374 ~~V~fP~~Ldl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~ 441 (576)
++|.||..|||.+|+..+.+.+..+... .+...+...+. ...+ ......+...+ .........++
T Consensus 247 ~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--- 323 (415)
T 1vjv_A 247 RKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQ--- 323 (415)
T ss_dssp CCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHH---
T ss_pred CccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhh---
Confidence 9999999999999997654322211100 00000000000 0000 00000000000 00000000000
Q ss_pred CccCCccccCCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEE
Q 008156 442 TKALGVDELGCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTV 520 (576)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~a 520 (576)
..+.... . .+ . ...........|+|+|||+|.|. +++|||+|
T Consensus 324 --------~~~~~~~-~------~~----------------~------~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a 366 (415)
T 1vjv_A 324 --------WLEEYKK-H------FP----------------P------NLEKGENPSCVYNLIGVITHQGANSESGHYQA 366 (415)
T ss_dssp --------HHHHHHT-T------SC----------------T------TCCTTBCSSSEEEEEEEEEEESSSTTSSEEEE
T ss_pred --------hhhhccc-c------cc----------------c------ccccccCCCceEEEEEEEEecCCCCCCCCEEE
Confidence 0000000 0 00 0 00001234568999999999996 99999999
Q ss_pred EEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCc-------eEEEEEEecc
Q 008156 521 YRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAE-------ASLLFYERII 574 (576)
Q Consensus 521 yvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~-------aYlLfY~rv~ 574 (576)
|||.+ ..+++||+|||+.|++|++++|++.. ||||||+|++
T Consensus 367 ~vr~~-------------~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 367 FIRDE-------------LDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EEECS-------------SCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred EEeCC-------------CCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 99951 25789999999999999999999876 9999999975
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2.8e-60 Score=513.12 Aligned_cols=324 Identities=26% Similarity=0.402 Sum_probs=259.8
Q ss_pred ccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhc--cCCCCCCCChHHHHHHHHHHHHHhcCCC-------Ccee
Q 008156 70 KLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMG--ECEEPDEDLPLTVALASLLEELCLVGET-------RLVL 140 (576)
Q Consensus 70 ~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~--~~~~~~~~~~l~~~L~~L~~~l~~~~~~-------~~~i 140 (576)
..++.+||.|+||||||||+||+|+++|+|+++++.... .+.......++.++|..+|..|+..... ...+
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 216 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTN 216 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCC
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccccc
Confidence 456899999999999999999999999999999986433 2222345678999999999999863321 2245
Q ss_pred ChHHHHHHHH---HHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhh
Q 008156 141 SPQKVMLAME---LYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWR 217 (576)
Q Consensus 141 ~p~~~~~~l~---~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (576)
.|..++..+. ...+.|.++.||||||||.+||+.|++++............ .......
T Consensus 217 ~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~-------------------~~~~~~~ 277 (476)
T 3mhs_A 217 RQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSR-------------------ANNKQCE 277 (476)
T ss_dssp SCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC--------------------------CCCSCC
T ss_pred CcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccc-------------------cccccCC
Confidence 6666655554 77899999999999999999999999998754321110000 0000112
Q ss_pred hcccccccceeeceEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc--cccCCcchhhh
Q 008156 218 KHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN--YHCSHCWHIAA 295 (576)
Q Consensus 218 ~~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~--~~C~~C~~~~~ 295 (576)
+.|.++|+|.+.++++|..|+++...++++|++|+|+++ ...+|+++|+.|+.+|.+++ |.|++|+..
T Consensus 278 s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~--------~~~sl~~~L~~~~~~E~l~~~~~~C~~C~~~-- 347 (476)
T 3mhs_A 278 CIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK--------DKKKLYECLDSFHKKEQLKDFNYHCGECNST-- 347 (476)
T ss_dssp SHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCT--------TCCBHHHHHHHHHCCEECSSCCCEETTTTEE--
T ss_pred CcceeecceEEEEEEEECCCCCeeCCcccchhhhccchh--------hhhHHHHHHHHhcChhhccCCCCcCCccCCc--
Confidence 347789999999999999999743456999999999543 23599999999999999985 999999987
Q ss_pred hhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccc
Q 008156 296 IKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGH 375 (576)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~ 375 (576)
+.+.|+..|.+||+||+|||+||.|+..+...|+.++
T Consensus 348 -------------------------------------------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~ 384 (476)
T 3mhs_A 348 -------------------------------------------QDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDF 384 (476)
T ss_dssp -------------------------------------------CCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCC
T ss_pred -------------------------------------------ccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEE
Confidence 8899999999999999999999999887888999999
Q ss_pred eeeccccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccc
Q 008156 376 IAFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAH 455 (576)
Q Consensus 376 V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (576)
|.||..|||.+|+..........
T Consensus 385 V~fP~~Ldl~~~~~~~~~~~~~~--------------------------------------------------------- 407 (476)
T 3mhs_A 385 IEFPTYLNMKNYCSTKEKDKHSE--------------------------------------------------------- 407 (476)
T ss_dssp CBCCSEEECGGGBSCCBCCC--C---------------------------------------------------------
T ss_pred EcCCCeeechhhcCccccccccc---------------------------------------------------------
Confidence 99999999999996542100000
Q ss_pred cccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCC
Q 008156 456 EKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNE 535 (576)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~ 535 (576)
........|+|+|||+|.|++++|||+||+|.
T Consensus 408 -------------------------------------~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~----------- 439 (476)
T 3mhs_A 408 -------------------------------------NGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI----------- 439 (476)
T ss_dssp -------------------------------------CCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC-----------
T ss_pred -------------------------------------ccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC-----------
Confidence 00123457999999999999999999999995
Q ss_pred CCCCCCCceEEEeCCceeeechhhhccCceEEEEEEecc
Q 008156 536 HFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERII 574 (576)
Q Consensus 536 ~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv~ 574 (576)
.+++||+|||+.|++|++++|+...||||||+|..
T Consensus 440 ----~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 440 ----SGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp ----TTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred ----CCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 47899999999999999999999999999999975
No 9
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-60 Score=539.30 Aligned_cols=246 Identities=20% Similarity=0.234 Sum_probs=209.8
Q ss_pred hhccCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhcc---CCCCCCCChHHHHHHHHHHHHHhcC----------
Q 008156 68 LEKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGE---CEEPDEDLPLTVALASLLEELCLVG---------- 134 (576)
Q Consensus 68 ~~~~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~---~~~~~~~~~l~~~L~~L~~~l~~~~---------- 134 (576)
+..+++++||.|+||||||||+||+|+++|+|+++|+..... ........++..+|+.||..|+...
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~ 417 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGD 417 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC----------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccc
Confidence 444678999999999999999999999999999998743221 1223456789999999999998532
Q ss_pred --------CCCceeChHHHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhh
Q 008156 135 --------ETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKR 206 (576)
Q Consensus 135 --------~~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (576)
.....++|..|+.+++..++.|.+++||||||||.+||+.|++++...
T Consensus 418 ~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~~------------------------ 473 (854)
T 3ihp_A 418 GERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSS------------------------ 473 (854)
T ss_dssp -----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTTS------------------------
T ss_pred cccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhccc------------------------
Confidence 345689999999999999999999999999999999999999987431
Q ss_pred hhhhHHhhhhhhcccccccceeeceEEecCCCCcccccccccceeecccCCCCC------------------------CC
Q 008156 207 REVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSG------------------------ST 262 (576)
Q Consensus 207 ~~~~~~~~~~~~~i~~~F~g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~------------------------~~ 262 (576)
+.|.++|.|.+.++++|..|++ .+.+.++|++|+|+++.... ..
T Consensus 474 -----------s~i~~lF~G~l~s~i~C~~C~~-vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 541 (854)
T 3ihp_A 474 -----------ENPNEVFRFLVEEKIKCLATEK-VKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPEL 541 (854)
T ss_dssp -----------CCGGGGTCEEEEEEEEETTTTE-EEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred -----------CCchhhcCceEEEEEEecCCCC-EeEEeeeceEEEeeCCccccccccchhhhccccccccccccccccc
Confidence 1267899999999999999996 79999999999997654211 11
Q ss_pred CCCCCCHHHHHhhhcCeeeccccccCCcchhhhhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccce
Q 008156 263 IPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTL 342 (576)
Q Consensus 263 ~~~~~sL~~~L~~~~~~E~i~~~~C~~C~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (576)
+...++|++||+.|+.+|.+++|.|++|+.+ +.+.
T Consensus 542 ~~~~~sL~dcL~~f~~~E~Le~y~C~~C~~k---------------------------------------------~~a~ 576 (854)
T 3ihp_A 542 VRAQVPFSSCLEAYGAPEQVDDFWSTALQAK---------------------------------------------SVAV 576 (854)
T ss_dssp CCEECCHHHHHHHHHSCEEEEEEEETTTTEE---------------------------------------------EEEE
T ss_pred ccCCCCHHHHHHHhcCceEeeeeeccccCCc---------------------------------------------ceee
Confidence 2345799999999999999999999999987 8999
Q ss_pred eEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCccCCCCC
Q 008156 343 KKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGI 394 (576)
Q Consensus 343 k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~ 394 (576)
|+..|.+||+||+|||+||.|+..+...|+..+|.||+.|||++|+..+.+.
T Consensus 577 K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~ 628 (854)
T 3ihp_A 577 KTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQP 628 (854)
T ss_dssp EEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCT
T ss_pred EEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCC
Confidence 9999999999999999999998778889999999999999999999876543
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=5e-59 Score=507.92 Aligned_cols=295 Identities=20% Similarity=0.268 Sum_probs=248.5
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
.++++||.|+||||||||+||||+++|+|++++...... ......++..+|+.||..|+... .++.|..|+..++
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~ 246 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG 246 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC--SSCTTTCHHHHHHHHHHHHHHCS---SCBCCTTHHHHTC
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc--CCcccchHHHHHHHHHHHHhcCC---CccCcHHHHhhcC
Confidence 457999999999999999999999999999999765322 12245689999999999998643 4788999887775
Q ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeec
Q 008156 151 LYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGS 230 (576)
Q Consensus 151 ~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s 230 (576)
. +.|.++.||||||||.+||+.|++++..... .+.|.++|+|++.+
T Consensus 247 ~--~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~~--------------------------------~s~i~~lF~G~~~s 292 (522)
T 2f1z_A 247 W--ETLDSFMQHDVQELCRVLLDNVENKMKGTCV--------------------------------EGTIPKLFRGKMVS 292 (522)
T ss_dssp C--CTTTSSTTSCHHHHHHHHHHHHHHHHTTSTT--------------------------------TTHHHHHHCEEEEE
T ss_pred C--ccCCCcccccHHHHHHHHHHHHHhhccCCcc--------------------------------ccchhhheeEEEEE
Confidence 3 6789999999999999999999998864210 11267899999999
Q ss_pred eEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHH
Q 008156 231 ILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEM 307 (576)
Q Consensus 231 ~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~ 307 (576)
+++|..|++ .+.+.|+|++|+|+++ ...+|++||+.|+.+|.+++ |.|+.|+.
T Consensus 293 ~i~C~~C~~-~s~~~e~f~~LsL~i~--------~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~~--------------- 348 (522)
T 2f1z_A 293 YIQCKEVDY-RSDRREDYYDIQLSIK--------GKKNIFESFVDYVAVEQLDGDNKYDAGEHGL--------------- 348 (522)
T ss_dssp EECCSSSCC-CCCEEEEESCEEECCT--------TCCBHHHHHHHHTCEEEECTTSCBCCGGGCS---------------
T ss_pred EEEcCCCCc-eeeeeeeeEEEEEEeC--------CcccchHHHHHhhceeecCCcceeecCcCCc---------------
Confidence 999999997 6899999999999543 23489999999999999986 88998875
Q ss_pred HHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-CceeeeccceeeccccccCc
Q 008156 308 EIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDLFP 386 (576)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl~~ 386 (576)
+.+.|+..|.+||+||+|||+||.|+.. +...|+.++|.||..|||.+
T Consensus 349 -------------------------------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~ 397 (522)
T 2f1z_A 349 -------------------------------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 397 (522)
T ss_dssp -------------------------------BCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGG
T ss_pred -------------------------------cceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchh
Confidence 8899999999999999999999999974 56789999999999999999
Q ss_pred CccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCC
Q 008156 387 FVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILP 466 (576)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (576)
|+....
T Consensus 398 ~~~~~~-------------------------------------------------------------------------- 403 (522)
T 2f1z_A 398 FLQKTD-------------------------------------------------------------------------- 403 (522)
T ss_dssp GBSSCC--------------------------------------------------------------------------
T ss_pred hhcccc--------------------------------------------------------------------------
Confidence 994310
Q ss_pred CCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEE
Q 008156 467 PTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFC 546 (576)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~ 546 (576)
......|+|+|||+|.|.+++|||+||+|.. .+++||+
T Consensus 404 ----------------------------~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~--------------~~~~W~~ 441 (522)
T 2f1z_A 404 ----------------------------PKDPANYILHAVLVHSGDNHGGHYVVYLNPK--------------GDGKWCK 441 (522)
T ss_dssp ----------------------------TTSCCEEEEEEEEEEECSSSCSEEEEEECTT--------------SSSCCEE
T ss_pred ----------------------------CCCCcEEEEEEEEEecccCCCceEEEEEecC--------------CCCCEEE
Confidence 0123479999999999999999999999942 5789999
Q ss_pred EeCCceeeechhhhcc---------------CceEEEEEEeccC
Q 008156 547 ISDSQVYSVSVNDVLA---------------AEASLLFYERIIE 575 (576)
Q Consensus 547 ~nD~~V~~v~~~~v~~---------------~~aYlLfY~rv~~ 575 (576)
|||+.|++|+.++|+. ..||||||+|.+.
T Consensus 442 fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 442 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp EETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred EECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCc
Confidence 9999999999999974 4699999999763
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=313.41 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=84.6
Q ss_pred CCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHH-HHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 72 CLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVAL-ASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 72 ~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L-~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
+.|+||.|+||||||||+||+|+++|++.+.|..+............++.+| ++||+.|.. ..+.|..|+..|+
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~LR 81 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI-----YGYVCATKIMKLR 81 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHHHH
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHHHH
Confidence 3699999999999999999999999999999998854432211223689999 899999975 5899999999999
Q ss_pred HHhhccCC-----CccccHHHHHHHHHHHHHH
Q 008156 151 LYIQNFNL-----TSQQDAEEAFLHLMSSLRE 177 (576)
Q Consensus 151 ~~~~~f~~-----~~QqDA~Efl~~Lld~L~~ 177 (576)
..+|+|.. +.||||+|||+.||..|..
T Consensus 82 ~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~ 113 (374)
T 2vhf_A 82 KILEKVEAASGFTSEEKDPEEFLNILFHHILR 113 (374)
T ss_dssp HHHHHHC--------CCCHHHHHHHHHTTTTC
T ss_pred HHhHHHhcccCCCccccCHHHHHHHHHHHHhh
Confidence 99999985 7999999999999998764
No 12
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=97.37 E-value=3.1e-05 Score=77.62 Aligned_cols=61 Identities=11% Similarity=-0.053 Sum_probs=43.9
Q ss_pred cccCCchHHHHHHhh-hcCCCCCCcchhhhcccc-----ccccccch-hhhhhhccccCCCcccccchh
Q 008156 2 KCEGATSVRALVLQS-LKNGFLPHMKWVSASGLL-----GILGVAGF-VLALKKDAKIGNLSGFSWLSE 63 (576)
Q Consensus 2 ~~~~v~~~r~k~~~~-~~~~~l~~~~~~~~~~~~-----~~~g~~~~-~~~l~~~p~~~~~~~~~~~~~ 63 (576)
..|||||+|||||+- .+|+.|+|+.+++.+||+ ||||++++ +.+...+|.....| ++++..
T Consensus 36 ~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~i~~~~~~p~~~~~~-~eD~~~ 103 (320)
T 3shq_A 36 RKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEADIEDACSLPDNIGEV-VDDFDD 103 (320)
T ss_dssp HHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC----------CCCSCC-CCTTCC
T ss_pred HHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhhhcccccCCCcCCcc-cccCCC
Confidence 368999999999951 257899999999999988 59999987 53334678888888 688875
No 13
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.83 E-value=0.014 Score=53.80 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=45.8
Q ss_pred CCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHH
Q 008156 73 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELY 152 (576)
Q Consensus 73 ~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~ 152 (576)
+..=|.=.-|+||+||++=.|-.+... ++++...+. .-+|..|...+-..
T Consensus 12 G~~vLkq~dNNCwVNaa~l~LQ~~~~~-----------------------~~~aw~~f~-------~Gd~~~fV~~~Ya~ 61 (211)
T 3mp2_A 12 GKIILKQGDNNCWINACCYQLQAFDFF-----------------------NNEAWEKFK-------KGDVMDFVNLCYAA 61 (211)
T ss_dssp TEEEECCCTTCHHHHHHHHHHTTCTTC-----------------------CCHHHHHHT-------TTCCHHHHHHHHHH
T ss_pred CEEEEEccCCCcHHHHHHHHHHhcChh-----------------------HHHHHHHHh-------CCChHHHHHHHHHH
Confidence 344455568999999998887655432 333334431 33556666666554
Q ss_pred hhccCCCccccHHHHHHHHH
Q 008156 153 IQNFNLTSQQDAEEAFLHLM 172 (576)
Q Consensus 153 ~~~f~~~~QqDA~Efl~~Ll 172 (576)
.....+.--||+++|..|+
T Consensus 62 -~~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 62 -TTLARGHSGDAEYLLELML 80 (211)
T ss_dssp -HTCCTTSCCCHHHHHHHHH
T ss_pred -cCCCCCCCcCHHHHHHHHH
Confidence 4566678889999999998
No 14
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.83 E-value=0.00013 Score=59.51 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=37.9
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc-----ccccccchhhhhhhccccCC
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL-----GILGVAGFVLALKKDAKIGN 54 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~-----~~~g~~~~~~~l~~~p~~~~ 54 (576)
.||||++||||+ .+|..|+|+ .++.+||+ +|+|+++.+ +.+|.++.
T Consensus 40 ~tgip~~~QkLi--~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~~---~~~p~~~~ 90 (96)
T 1wgg_A 40 LTGVQPARQKVM--VKGGTLKDD-DWGNIKMKNGMTVLMMGSADAL---PEEPSAKT 90 (96)
T ss_dssp HTCCCTTTSCCE--ETTEECCSS-CCCSCCCCSSCEEECCCCCCCC---CCCCCCSS
T ss_pred HHCcCHHHeEEE--ECCcCCCCC-CHHHCCCCCCCEEEEEecchhc---CCCCCcCC
Confidence 589999999999 899999999 99999988 488988865 45555443
No 15
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.70 E-value=0.27 Score=48.18 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=46.5
Q ss_pred CCCcccCCCchhhHHHHHHHhccch-hHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHHH
Q 008156 74 VPGLQNLGNNCFLNVILQALASCTC-FLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELY 152 (576)
Q Consensus 74 ~~GL~NlGNTCY~NSvLQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~~ 152 (576)
..=|.=.-|+||+||++=.|-.+.. |+. .+|+++...+. .-+|..|...+-..
T Consensus 102 ~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~-------------------~~l~~aw~~f~-------~Gd~~~FVa~~Ya~ 155 (315)
T 2fe8_A 102 LTSIKWADNNCYLSSVLLALQQLEVKFNA-------------------PALQEAYYRAR-------AGDAANFCALILAY 155 (315)
T ss_dssp EECCCCCTTTHHHHHHHHHHHTSCCCBSS-------------------HHHHHHHHHHH-------HTCCHHHHHHHHHH
T ss_pred EEEEeecCCccHHHHHHHHHHhcCCccCC-------------------HHHHHHHHHHh-------CCChHHHHHHHHHh
Confidence 3334455799999999877755432 221 24555555552 33567777666665
Q ss_pred hhccCCCccccHHHHHHHHH
Q 008156 153 IQNFNLTSQQDAEEAFLHLM 172 (576)
Q Consensus 153 ~~~f~~~~QqDA~Efl~~Ll 172 (576)
.....++--||+++|..|+
T Consensus 156 -~~~~~G~~gDa~~~L~~Ll 174 (315)
T 2fe8_A 156 -SNKTVGELGDVRETMTHLL 174 (315)
T ss_dssp -TTCCTTSCCCHHHHHHHHH
T ss_pred -cCCCCCCCccHHHHHHHHH
Confidence 4455678889999999994
No 16
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=95.56 E-value=0.0011 Score=53.21 Aligned_cols=41 Identities=17% Similarity=0.030 Sum_probs=33.7
Q ss_pred ccCCchHHHHHHhh-hcCCCCCCcchhhhcccc-----ccccccchh
Q 008156 3 CEGATSVRALVLQS-LKNGFLPHMKWVSASGLL-----GILGVAGFV 43 (576)
Q Consensus 3 ~~~v~~~r~k~~~~-~~~~~l~~~~~~~~~~~~-----~~~g~~~~~ 43 (576)
.||||++||||++. .+|..|+|+.+++.++++ +|+|+++++
T Consensus 40 ~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~~~ 86 (90)
T 1v5t_A 40 LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRESG 86 (90)
T ss_dssp HTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCSSS
T ss_pred HHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCccc
Confidence 58999999999942 356689999999999988 488888764
No 17
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.17 E-value=0.0023 Score=52.17 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=27.5
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.|||||+||||++ .++|.|+|+..++.++++
T Consensus 41 ~tgIpp~~QkLi~-~~~gkL~D~~tLs~~~I~ 71 (100)
T 2dzm_A 41 ELQIPVSKMLLKG-WKTGDVEDSTVLKSLHLP 71 (100)
T ss_dssp HHCCCTTTCCEEC-CSSSCCCTTSBHHHHCCC
T ss_pred HHCCChhHeEEEc-cCCCCCCCcCCHHHcCCC
Confidence 5899999999984 477889999999999997
No 18
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.23 E-value=0.012 Score=47.54 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=29.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc-----ccccccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL-----GILGVAG 41 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~-----~~~g~~~ 41 (576)
.||||++||+|+ .+|..| ||..++.++++ +|+|+..
T Consensus 49 ~tgip~~~QrL~--~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 49 ITGLPPAMQKVM--YKGLVP-EDKTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp HHCSCSTTCCCB--SSSBCC-SSSBHHHHCCCTTEEEEECCSSC
T ss_pred HHCcCHHHeEEE--ECCeeC-CcCcHHHCCCCCCCEEEEEeccc
Confidence 589999999999 888888 66799999987 3666653
No 19
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=92.31 E-value=0.015 Score=46.09 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGL 33 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~ 33 (576)
.+|||+++|+|+ .+|..|+|+.+++.+++
T Consensus 37 ~~gip~~~QrLi--~~Gk~L~D~~tL~~y~I 65 (87)
T 2lxa_A 37 EKASHISEIKLL--LKGKVLHDNLFLSDLKV 65 (87)
T ss_dssp TSCSSSTTEEEE--ETTEECCTTCBHHHHCC
T ss_pred hcCCChHHEEEE--ECCEECcCcCCHHHcCC
Confidence 579999999999 89999999999999999
No 20
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=92.20 E-value=0.015 Score=45.90 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=27.2
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 44 ~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~ 73 (85)
T 2kd0_A 44 ITNVLPRGQKLI--FKGKVLVETSTLKQSDVG 73 (85)
T ss_dssp HHCCCTTTCEEE--ETTEECCTTCBTTTTTCC
T ss_pred HHCcChHHEEEE--ECCeECCCcCCHHHCCCC
Confidence 479999999999 788899999999999986
No 21
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=89.99 E-value=0.042 Score=44.54 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=27.9
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhccc-c
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGL-L 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~-~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+++ +
T Consensus 55 ~~gip~~~QrLi--~~Gk~L~D~~tL~dy~I~~ 85 (98)
T 4a20_A 55 EKASHISEIKLL--LKGKVLHDNLFLSDLKVTP 85 (98)
T ss_dssp TSCSCGGGEEEE--ETTEEECTTCBGGGSCCBT
T ss_pred hcCCChhhEEEE--ECCEECcCcCCHHHcCcCC
Confidence 479999999999 89999999999999998 5
No 22
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.76 E-value=0.034 Score=44.43 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=26.3
Q ss_pred ccCCchHHHHHHhhhcCCCCCC-cchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPH-MKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~-~~~~~~~~~~ 34 (576)
.+|||++||+|+ .+|..|+| +..++.+|++
T Consensus 44 ~~gip~~~qrL~--~~Gk~L~D~~~~L~~~~i~ 74 (92)
T 1wxv_A 44 VIGVPQSFQKLI--FKGKSLKEMETPLSALGIQ 74 (92)
T ss_dssp HTCCCTTTCEEE--ETTEEECCSSSBHHHHTCC
T ss_pred HHCcCHHHEEEE--ECCeecCCCcccHHHCCCC
Confidence 479999999999 88889998 4579999987
No 23
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=88.10 E-value=0.28 Score=41.43 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCCCcccCCCchhhHHHHHHHhccc-hhHHHHHh
Q 008156 73 LVPGLQNLGNNCFLNVILQALASCT-CFLPFLQK 105 (576)
Q Consensus 73 ~~~GL~NlGNTCY~NSvLQ~L~~~p-~f~~~l~~ 105 (576)
...|+.|.-++|++|++||+...+. +|-++...
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y~ 45 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYS 45 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHT
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhccC
Confidence 4789999999999999999987653 45555443
No 24
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=85.71 E-value=0.12 Score=40.23 Aligned_cols=30 Identities=3% Similarity=-0.078 Sum_probs=27.3
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
++|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 41 ~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~ 70 (85)
T 2wyq_A 41 RDAFPVAGQKLI--YAGKILSDDVPIRDYRID 70 (85)
T ss_dssp TTTCCGGGEEEE--ETTEECCTTSBGGGGCCC
T ss_pred ccCCCHHHeEEE--ECCEECcCCCCHHHcCCC
Confidence 489999999999 788899999999999986
No 25
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=85.60 E-value=0.11 Score=41.33 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.5
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 50 ~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~ 79 (91)
T 3v6c_B 50 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 79 (91)
T ss_dssp HHCCCGGGCEEE--ETTEECCTTCBTGGGTCC
T ss_pred hhCCChhhEEEE--ECCeECCCcCcHHHCCCC
Confidence 479999999999 888899999999999986
No 26
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=85.65 E-value=0.16 Score=38.55 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 33 ~~gi~~~~qrL~--~~gk~L~d~~tL~~~~i~ 62 (76)
T 3b1l_X 33 QQGVPADQLRVI--FAGKELPNHLTVQNCDLE 62 (76)
Confidence 579999999999 888899999999999885
No 27
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=85.33 E-value=0.1 Score=41.26 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=27.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 33 ~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~ 62 (88)
T 4fbj_B 33 KEGIPPQQQRLI--YSGKQMNDEKTAADYKIL 62 (88)
T ss_dssp HHCCCGGGCEEE--ETTEECCTTSBTTTTTCC
T ss_pred HHCcChhHEEEE--ECCeECCCCCcHHHcCCC
Confidence 479999999999 888899999999999987
No 28
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=85.16 E-value=0.11 Score=40.80 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=26.9
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|+.
T Consensus 50 ~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~ 79 (88)
T 4eew_A 50 SVSIPSEKQRLI--YQGRVLQDDKKLQEYNVG 79 (88)
T ss_dssp HHTCCGGGEEEE--ETTEECCTTSBGGGGTCT
T ss_pred HhCCCHHHEEEE--ECCEECCCCCcHHHcCCC
Confidence 479999999999 888899999999999873
No 29
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=85.02 E-value=0.1 Score=40.90 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=26.8
Q ss_pred ccCCchHHHHHHhhhcCCC-CCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGF-LPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~-l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|.. |.|+.+++.+|++
T Consensus 43 ~~gip~~~QrLi--~~Gk~lL~D~~tL~~y~I~ 73 (84)
T 2kk8_A 43 SQHIPVSKQTLI--VDGIVILREDLTVEQCQIV 73 (84)
T ss_dssp HHTCCGGGEEEE--ETTEECCCSSSBHHHHTCC
T ss_pred HHCcChHHEEEE--ECCEEecCCcCCHHHcCCC
Confidence 479999999999 77777 9999999999986
No 30
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=84.86 E-value=0.12 Score=39.68 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=27.3
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 37 ~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~ 66 (79)
T 3phx_B 37 LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLK 66 (79)
T ss_dssp HHTCCGGGEEEE--ETTEECCTTSBGGGGTCC
T ss_pred hcCCCHHHEEEE--ECCEECCCCCcHHHCCCC
Confidence 479999999999 888899999999999986
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=84.81 E-value=0.14 Score=40.44 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 37 ~~gip~~~qrL~--~~Gk~L~D~~tL~~~~I~ 66 (88)
T 2hj8_A 37 LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLK 66 (88)
T ss_dssp HTCSCTTTEEEE--SSSSCCCTTSBHHHHHCS
T ss_pred HhCCChhHEEEE--ECCEECCCCCcHHHcCCC
Confidence 479999999999 888899999999999986
No 32
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.63 E-value=0.13 Score=41.34 Aligned_cols=30 Identities=3% Similarity=-0.073 Sum_probs=27.3
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
++|||+++|+|+ ..|..|+|+.+++.+|++
T Consensus 36 ~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~ 65 (95)
T 1uel_A 36 KDAFPVAGQKLI--YAGKILNDDTALKEYKID 65 (95)
T ss_dssp TTTCCTTTEEEE--ETTEECCTTSBGGGGTCC
T ss_pred cCCCChhhEEEE--ECCEECCCcCcHHHCCCC
Confidence 389999999999 888899999999999996
No 33
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=84.43 E-value=0.13 Score=42.16 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=27.8
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 34 ~~gip~~~QrLi--~~Gk~L~D~~tL~~~~i~ 63 (106)
T 3m62_B 34 SISCEESQIKLI--YSGKVLQDSKTVSECGLK 63 (106)
T ss_dssp TTTSCGGGCEEE--ETTEECCTTSBTTTTTCC
T ss_pred HHCCChhhEEEE--ECCEECCCcCCHHHcCCC
Confidence 579999999999 888899999999999997
No 34
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=84.04 E-value=0.11 Score=42.38 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=27.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 60 ~~gip~~~QrLi--~~Gk~L~D~~tL~~~gI~ 89 (101)
T 3m63_B 60 ANGIPVANQRLI--YSGKILKDDQTVESYHIQ 89 (101)
T ss_dssp HHSCCSTTCCEE--ETTEECCTTSBTTTTTCC
T ss_pred HHCcChHHEEEE--ECCEECCCcCcHHHCCCC
Confidence 479999999999 888899999999999986
No 35
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=83.50 E-value=0.14 Score=38.88 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|.|+.+++.+|++
T Consensus 36 ~~~i~~~~qrL~--~~gk~L~d~~tL~~~~i~ 65 (77)
T 2bwf_A 36 ANGIPVANQRLI--YSGKILKDDQTVESYHIQ 65 (77)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTSBTGGGTCC
T ss_pred HhCCCHHHEEEE--ECCeEcCCCCCHHHcCCC
Confidence 479999999999 888899999999999986
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=83.03 E-value=0.12 Score=41.41 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCc-chhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHM-KWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~-~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|+|+ .+++.+|++
T Consensus 47 ~~gip~~~QrLi--~~Gk~L~D~~~tL~~ygI~ 77 (94)
T 2kan_A 47 VENTPIKRMQLY--YSGIELADDYRNLNEYGIT 77 (94)
T ss_dssp HSSSCTTTEEEE--ETTEEECCTTSBHHHHTCC
T ss_pred HHCcCHHHEEEE--ECCEECCCCcccHHHCCCC
Confidence 479999999999 888899999 899999986
No 37
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=82.52 E-value=0.17 Score=40.84 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+..++.++++
T Consensus 55 ~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~ 84 (98)
T 4hcn_B 55 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 84 (98)
T ss_dssp HHCCCGGGCEEE--ETTEECCTTCBSGGGTCC
T ss_pred HhCCChhHEEEE--ECCEECCCCCcHHHCCCC
Confidence 479999999999 888899999999999986
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=82.13 E-value=0.17 Score=39.82 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 42 ~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~ 71 (88)
T 1sif_A 42 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 71 (88)
T ss_dssp HHCCCGGGCEEE--ETTEECCTTSBSGGGTCC
T ss_pred HHCcChhhEEEE--ECCEECCCCCcHHHcCCC
Confidence 479999999999 788899999999999986
No 39
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=81.99 E-value=0.19 Score=39.06 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.2
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .++..|+|+.+++.++++
T Consensus 36 ~~~i~~~~qrL~--~~g~~L~d~~tL~~~~i~ 65 (85)
T 3mtn_B 36 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 65 (85)
T ss_dssp HHCCCGGGCEEE--ETTEECCTTSBTGGGTCC
T ss_pred HHCcChHHEEEE--ECCEECCCCCCHHHcCCC
Confidence 479999999999 888899999999999986
No 40
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=81.77 E-value=0.2 Score=39.18 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=27.3
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|.|+.+++.++++
T Consensus 45 ~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~ 74 (88)
T 3dbh_I 45 KEGIPPQQQRLI--YSGKQMNDEKTAADYKIL 74 (88)
T ss_dssp HHCCCGGGCCEE--ETTEECCTTSBGGGGTCC
T ss_pred HHCcCHHHEEEE--ECCeECCCCCcHHHcCCC
Confidence 479999999999 888899999999999986
No 41
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.59 E-value=0.19 Score=38.57 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=27.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|.|+.+++.+|++
T Consensus 40 ~~~i~~~~qrL~--~~gk~L~d~~tL~~~~i~ 69 (81)
T 2dzi_A 40 KLNVPVRQQRLL--FKGKALADGKRLSDYSIG 69 (81)
T ss_dssp HTCCCTTTCEEE--ETTEECCTTSBGGGGTCC
T ss_pred HHCcCHHHEEEE--ECCeECCCCCcHHHcCCC
Confidence 479999999999 788899999999999986
No 42
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=81.23 E-value=0.18 Score=38.55 Aligned_cols=30 Identities=0% Similarity=-0.210 Sum_probs=26.8
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 37 ~~gip~~~qrL~--~~g~~L~d~~tL~~~~i~ 66 (78)
T 2faz_A 37 LFHVEPGLQRLF--YRGKQMEDGHTLFDYEVR 66 (78)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTCBTTTTTCC
T ss_pred HHCcChhhEEEE--ECCEECCCCCCHHHcCCC
Confidence 479999999999 788889999999999885
No 43
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=80.66 E-value=0.33 Score=41.29 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+||||++|+|+ ..|..|.|+.+++.+|+.
T Consensus 33 ~~gip~~~QrLi--~~Gk~L~D~~tL~~~~I~ 62 (128)
T 3u5e_m 33 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 62 (128)
T ss_dssp --------------------------------
T ss_pred HhCcChHHEEEE--ECCEECCCCCchhhhccC
Confidence 589999999999 899999999999999986
No 44
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=80.62 E-value=0.19 Score=39.05 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=27.2
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .++..|.|+.+++.++++
T Consensus 36 ~~~ip~~~qrL~--~~g~~L~d~~tL~~~~i~ 65 (85)
T 3n3k_B 36 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIH 65 (85)
T ss_dssp HHCCCGGGEEEE--ETBEECCTTCBTTTTTCC
T ss_pred HHCCCHHHEEEE--ECCeECCCCCCHHHCCCC
Confidence 479999999999 888899999999999986
No 45
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=80.60 E-value=0.27 Score=40.61 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=27.5
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 64 ~~gip~~~QrL~--~~Gk~L~D~~tL~~y~I~ 93 (111)
T 1we6_A 64 EIQIPANKQKLS--GKAGFLKDNMSLAHYNVG 93 (111)
T ss_dssp HTTCCTTTSEEE--CSSSBCCTTSBTTTTTCS
T ss_pred HHCCCHHHeEEE--ECCEECCCCCcHHHCCCC
Confidence 479999999999 888899999999999986
No 46
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=79.86 E-value=0.21 Score=39.81 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=27.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|+|+.+++.++++
T Consensus 50 ~~gip~~~qrLi--~~Gk~L~D~~tL~~y~I~ 79 (93)
T 2l7r_A 50 LEGIAPEDQVVL--LAGAPLEDEATLGQCGVE 79 (93)
T ss_dssp HHTCCGGGCEEE--ETTEECCTTSBHHHHTCC
T ss_pred HhCcChhHEEEE--ECCEECCCCCcHHHCCCC
Confidence 479999999999 888899999999999886
No 47
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=79.86 E-value=0.19 Score=40.59 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=27.0
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+||||++|+|+ ..|-+|+|+.+++..+|+
T Consensus 53 ~gip~~qQrLI--~~GKiL~D~~TL~~y~I~ 81 (100)
T 1wju_A 53 FGLQENYIKIV--INKKQLQLGKTLEEQGVA 81 (100)
T ss_dssp TTCCSTTCEEE--ETTEECCTTSBHHHHTCC
T ss_pred HCcCHHHeEEE--eCCeECCCCCcHHHcCCC
Confidence 69999999999 788899999999999997
No 48
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=79.82 E-value=0.24 Score=39.58 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|+|+.+++.+|++
T Consensus 34 ~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~ 63 (96)
T 3k9o_B 34 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 63 (96)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTSBTGGGTCC
T ss_pred hhCCChhHEEEE--ECCEECCCCCcHHHcCCC
Confidence 479999999999 888899999999999987
No 49
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=79.45 E-value=0.26 Score=37.21 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=26.9
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 33 ~~~i~~~~q~L~--~~g~~L~d~~tL~~~~i~ 62 (76)
T 1ndd_A 33 KEGIPPQQQRLI--YSGKQMNDEKTAADYKIL 62 (76)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTSBGGGGTCC
T ss_pred HHCcChHHEEEE--ECCEECCCCCcHHHcCCC
Confidence 479999999999 788899999999999886
No 50
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=79.44 E-value=0.22 Score=40.37 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 54 ~~gip~~~QrLi--~~Gk~L~D~~tL~~ygI~ 83 (100)
T 1yqb_A 54 RFKAHPDQLVLI--FAGKILKDPDSLAQCGVR 83 (100)
T ss_dssp HHTCCGGGEEEE--ETTEECCTTSBHHHHTCC
T ss_pred HHCcChhhEEEE--ECCEECCCcCcHHHCCCC
Confidence 479999999999 788899999999999986
No 51
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=79.42 E-value=0.22 Score=40.41 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 57 ~~gip~~~qrLi--~~Gk~L~D~~tL~~~gI~ 86 (101)
T 2klc_A 57 RFKSHTDQLVLI--FAGKILKDQDTLSQHGIH 86 (101)
T ss_dssp HHTCCGGGEEEE--ETTEEECTTCCTGGGTCC
T ss_pred HHCcChhhEEEE--ECCEECCCcCcHHHcCCC
Confidence 479999999999 788899999999999986
No 52
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.85 E-value=0.25 Score=40.12 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=26.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCc-chhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHM-KWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~-~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|+|+ .+++.+|++
T Consensus 44 ~~gip~~~qrL~--~~gk~L~D~~~tL~~ygI~ 74 (102)
T 1v5o_A 44 ESGVPAEEAQIV--YMEQLLTDDHCSLGSYGLK 74 (102)
T ss_dssp HTCCCGGGBCEE--ETTEEECCSSSBHHHHTCC
T ss_pred HHCcChHHeEEE--ECCEECCCCcccHHHCCCC
Confidence 479999999999 888899988 589999987
No 53
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.77 E-value=0.23 Score=39.51 Aligned_cols=28 Identities=4% Similarity=-0.046 Sum_probs=25.6
Q ss_pred CCchHHHHHHhhhcCCCCCCcchhhhc--ccc
Q 008156 5 GATSVRALVLQSLKNGFLPHMKWVSAS--GLL 34 (576)
Q Consensus 5 ~v~~~r~k~~~~~~~~~l~~~~~~~~~--~~~ 34 (576)
|||++||+|+ .+|..|+|+.+++.+ +++
T Consensus 46 ~i~~~~QrLi--~~Gk~L~D~~tL~~~~~~i~ 75 (93)
T 1wgd_A 46 RPRPEDQRLI--YSGKLLLDHQCLRDLLPKQE 75 (93)
T ss_dssp CCCTTTCEEE--ETTEECCSSSCHHHHSCSSS
T ss_pred CCChHHeEEE--ECCEECcCcCCHHHHhcCCC
Confidence 9999999999 888899999999998 775
No 54
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.61 E-value=0.25 Score=39.56 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=27.2
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.+|++
T Consensus 49 ~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~ 78 (96)
T 1wx8_A 49 YLHCNADRLVLI--FTGKILRDQDILSQRGIL 78 (96)
T ss_dssp HTCSCTTTBCCE--ETTEECCTTSCHHHHTCC
T ss_pred HhCCCHHHEEEE--ECCEECCCcCCHHHCCCC
Confidence 479999999999 888899999999999986
No 55
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=78.35 E-value=0.29 Score=38.59 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=27.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|+|+..++.+++.
T Consensus 38 ~~gip~~~qrLi--~~Gk~L~d~~tL~~~~i~ 67 (90)
T 4dwf_A 38 SVSIPSEKQRLI--YQGRVLQDDKKLQEYNVG 67 (90)
T ss_dssp HHTCCGGGEEEE--ETTEECCTTSBGGGGTCT
T ss_pred HhCCCHHHEEEE--ECCeECCCCCCHHHcCCC
Confidence 479999999999 888899999999999884
No 56
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=78.17 E-value=0.28 Score=36.94 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=26.7
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|.|+.+++.+|++
T Consensus 33 ~~~i~~~~q~L~--~~g~~L~d~~tL~~~~i~ 62 (76)
T 3a9j_A 33 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 62 (76)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTCBTGGGTCC
T ss_pred HHCcCHHHeEEE--ECCeECCCCCcHHHcCCC
Confidence 479999999999 788889999999999886
No 57
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.60 E-value=0.26 Score=38.72 Aligned_cols=30 Identities=3% Similarity=-0.201 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.++++
T Consensus 42 ~~gip~~~qrL~--~~gk~L~d~~tL~~~~i~ 71 (89)
T 1wy8_A 42 LFDVRPECQRLF--YRGKQLENGYTLFDYDVG 71 (89)
T ss_dssp HSCCCTTTEEEE--ETTEECCSSSBHHHHTCC
T ss_pred HHCcChhhEEEE--ECCeECCCCCCHHHCCCC
Confidence 479999999999 788899999999999986
No 58
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=77.35 E-value=0.29 Score=40.49 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.+++.++++
T Consensus 68 ~~gip~~~QrLi--~~Gk~L~D~~tL~~~gI~ 97 (111)
T 3vdz_A 68 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 97 (111)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTSBTTTTTCC
T ss_pred HhCCChHHEEEE--ECCEECCCCCcHHHCCCC
Confidence 479999999999 888899999999999986
No 59
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=76.19 E-value=0.53 Score=41.26 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+||.
T Consensus 33 ~~gip~~~QrLi--~~Gk~L~D~~tL~dygI~ 62 (152)
T 3u5c_f 33 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 62 (152)
T ss_dssp --------------------------------
T ss_pred HhCCCHHHEEEE--ECCEEccccCcHHHcCCC
Confidence 579999999999 899999999999999987
No 60
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=75.95 E-value=0.41 Score=38.43 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 33 ~~gi~~~~qrL~--~~Gk~L~D~~tL~~~gi~ 62 (98)
T 1yx5_B 33 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 62 (98)
T ss_dssp HTCCCGGGEEEE--ETTEECCTTSBTGGGTCC
T ss_pred HHCcChhhEEEE--ECCEECCCCCCHHHcCCC
Confidence 479999999999 788899999999999986
No 61
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=75.19 E-value=0.36 Score=40.13 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=27.2
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 42 ~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~ 71 (114)
T 2kdi_A 42 KEGIPPDQQRLI--WAGKQLEDGRTLSDYNIQ 71 (114)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTCBTTTTTCC
T ss_pred HHCcChHHEEEE--ECCEECCCCCcHHHCCCC
Confidence 479999999999 788899999999999986
No 62
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.89 E-value=0.36 Score=38.98 Aligned_cols=29 Identities=3% Similarity=-0.074 Sum_probs=26.3
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|||++||+|. ..|.+|+|+.+++..+|+
T Consensus 62 ~Gip~~qQrLi--~~Gk~L~D~~TL~dygI~ 90 (100)
T 1uh6_A 62 TGTRWNKIVLK--KWYTIFKDHVSLGDYEIH 90 (100)
T ss_dssp HCCCGGGCEEE--ETTEECCSSCBHHHHTCC
T ss_pred hCCCHHHEEEE--ECCEECCCCCCHHHcCCC
Confidence 69999999999 777799999999999886
No 63
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.35 E-value=0.36 Score=37.69 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=26.9
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.++++
T Consensus 40 ~~gi~~~~qrL~--~~Gk~L~d~~tL~~~~i~ 69 (87)
T 1wh3_A 40 QQGLPKKQQQLE--FQGQVLQDWLGLGIYGIQ 69 (87)
T ss_dssp HTCCCTTTEEEE--ETTEECCSSSBHHHHTCC
T ss_pred HhCCChHHEEEE--ECCEEccCCCCHHHCCCC
Confidence 479999999999 788889999999999886
No 64
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.53 E-value=0.41 Score=39.17 Aligned_cols=30 Identities=10% Similarity=-0.018 Sum_probs=27.5
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 56 ~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~ 85 (106)
T 1ttn_A 56 AEGVEPGSQRWF--FSGRPLTDKMKFEELKIP 85 (106)
T ss_dssp TTCCCSTTCEEE--ETTEECCTTSHHHHCCCS
T ss_pred HHCcCcccEEEE--ECCEECCCCCcHHHcCCC
Confidence 589999999999 888899999999999996
No 65
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=71.48 E-value=0.42 Score=39.71 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.++++
T Consensus 68 ~~gip~~~QrL~--~~Gk~L~D~~tL~~y~i~ 97 (115)
T 1we7_A 68 ATGMPAGKQKLQ--YEGIFIKDSNSLAYYNMA 97 (115)
T ss_dssp HSSCCTTTEEEE--ETTEEECTTSBHHHHTCC
T ss_pred HHCCChHHEEEE--ECCEECCCCCCHHHCCCC
Confidence 479999999999 788899999999999986
No 66
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.71 E-value=0.43 Score=39.00 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=27.2
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+..+..++++
T Consensus 49 ~~gip~~~qrLi--~~Gk~L~D~~tL~~~gi~ 78 (106)
T 1wx7_A 49 RFKAHPDQLVLI--FAGKILKDPDSLAQCGVR 78 (106)
T ss_dssp HHTCCTTTEEEE--ETTEECCTTSCHHHHTCC
T ss_pred HHCcChhhEEEE--ECCEECCCcCcHHHcCCC
Confidence 479999999999 888899999999999987
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=70.21 E-value=0.63 Score=41.65 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|+|+.+++.+|++
T Consensus 53 ~~gip~~~QrL~--~~g~~L~d~~tL~~~~i~ 82 (172)
T 3u30_A 53 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 82 (172)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTCBTGGGTCC
T ss_pred HHCcChHHEEEE--ECCccccccCCHhHcCCc
Confidence 479999999999 888899999999999986
No 68
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.51 E-value=0.42 Score=39.59 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=27.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
..|||+++|.|+ ..|.+|||+.++...|++
T Consensus 49 ~~~iP~e~qrLI--y~GKiLKD~eTL~~~gIk 78 (118)
T 2daf_A 49 LLGIPHSVLQIR--YSGKILKNNETLVQHGVK 78 (118)
T ss_dssp HHTCCTTTEEEE--ETTEEECSSCCHHHHSCC
T ss_pred hhCCChHHEEEE--ECCeEcCCcchHHHcCCC
Confidence 368999999999 888899999999999997
No 69
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.25 E-value=0.51 Score=38.66 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=26.2
Q ss_pred CCchHH-HHHHhhhcCCCCCCcchhhhcccc
Q 008156 5 GATSVR-ALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 5 ~v~~~r-~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
|||+++ |+|+ .+|..|+|+.+++.+|++
T Consensus 61 gip~~~~qrLi--~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 61 SVPDPELIDLI--YCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp TCCCSSSEEEE--ETTEECCTTCBHHHHTCC
T ss_pred CCChhhcEEEE--ECCeECCCCCcHHHcCCC
Confidence 999999 9999 888899999999999986
No 70
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=67.68 E-value=0.71 Score=36.61 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=26.1
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|+||++|+|. -.|.+|+|+.++...+|+
T Consensus 55 ~Gip~~qQrLi--f~Gk~LkD~~TL~dY~I~ 83 (93)
T 3plu_A 55 IGTQPNKIVLQ--KGGSVLKDHISLEDYEVH 83 (93)
T ss_dssp HTCCGGGEEEE--ETTEECCTTSBTGGGTCC
T ss_pred hCCCHHHEEEE--eCCEEccCcCCHHHcCCC
Confidence 69999999998 666799999999999986
No 71
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=67.56 E-value=0.68 Score=41.38 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.6
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 33 ~~gip~~~QrLi--~~Gk~L~D~~tL~~y~I~ 62 (169)
T 3l0w_B 33 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 62 (169)
T ss_dssp HHCCCTTTEEEE--ETTEECCTTSBGGGGTCC
T ss_pred HHCcCHHHEEEE--ECCccccCcCcHHHcCCC
Confidence 479999999999 888899999999999987
No 72
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=67.21 E-value=0.6 Score=38.49 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|.|+.+++.+|++
T Consensus 68 ~~gip~~~qrLi--~~Gk~L~D~~tL~~~gI~ 97 (111)
T 2ojr_A 68 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 97 (111)
T ss_dssp HHCCCTTTEEEE--ETTEECCSSCBTTTTTCC
T ss_pred HHCcCcccEEEE--ECCEECCCCCcHHHcCCC
Confidence 479999999999 788899999999999886
No 73
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.93 E-value=0.52 Score=39.83 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=27.2
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|..|+|+.++..+|++
T Consensus 64 ~~gip~~~QrLi--~~Gk~L~D~~tL~dygI~ 93 (125)
T 1j8c_A 64 RFKSQTDQLVLI--FAGKILKDQDTLIQHGIH 93 (125)
T ss_dssp HHCSCSSSEEEE--ETTEEESTTSCGGGTTCS
T ss_pred HHCcCcceEEEE--ECCEEcCCCCCHHHcCCC
Confidence 479999999999 788899999999999997
No 74
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=66.48 E-value=1.1 Score=34.99 Aligned_cols=31 Identities=6% Similarity=-0.164 Sum_probs=26.2
Q ss_pred cccCCchHHHHHHhhhc-------CCCCCCcchhhhcccc
Q 008156 2 KCEGATSVRALVLQSLK-------NGFLPHMKWVSASGLL 34 (576)
Q Consensus 2 ~~~~v~~~r~k~~~~~~-------~~~l~~~~~~~~~~~~ 34 (576)
..+||||+.|+|. .+ |.++.|+.+++..|++
T Consensus 36 ~~~Gip~~~QrLi--~~~~~~~~~g~~l~d~~tL~~Y~i~ 73 (86)
T 4b6w_A 36 THFATPPEYMQLQ--LIDDRGITIEKNMANDKQLGYYQCR 73 (86)
T ss_dssp TTSCCCGGGEEEE--EECTTSCEEESSCCTTSBGGGGTCC
T ss_pred HHHCCCHHHEEEE--EecCCCCceeeEcCCCCCHHHCCCC
Confidence 3589999999998 54 4578999999999986
No 75
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=65.94 E-value=0.73 Score=38.37 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=26.9
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||++.|+|+ ..|..|.|+.+++.+||+
T Consensus 34 ~egIP~~qQrLi--~~Gk~LeD~~TLsdy~I~ 63 (118)
T 2fnj_B 34 ILKRPPEEQRLY--KDDQLLDDGKTLGECGFT 63 (118)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTSBHHHHTCC
T ss_pred HhCCCHHHeEEE--ECCeECCCCCCHHHcCcc
Confidence 479999999999 677799999999999987
No 76
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=63.26 E-value=0.9 Score=37.74 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhccccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLLG 35 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~~ 35 (576)
.+||||++|+|. ..|.+|.|+.+++.+||+.
T Consensus 34 ~~giPp~qQrLI--~~Gk~LeD~kTL~dy~I~~ 64 (118)
T 4ajy_B 34 ILKRPPDEQRLY--KDDQLLDDGKTLGECGFTS 64 (118)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTSBTTTTTCCG
T ss_pred HHCCCHHHeEEE--eCCeECCCcCCHHHcCCCc
Confidence 469999999999 6777999999999999973
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.12 E-value=1.5 Score=34.48 Aligned_cols=32 Identities=9% Similarity=-0.148 Sum_probs=25.4
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
..||||+||+|.-.-+|-+|+|+.+++..+++
T Consensus 47 ~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~ 78 (88)
T 2dzj_A 47 HPQWYPARQSLRLDPKGKSLKDEDVLQKLPVG 78 (88)
T ss_dssp CSSSCTTTCCEESSTTSCCCCTTCBTTTSSCC
T ss_pred hcCCChHHeEEEecCCCcCcCCCCCHHHcCCC
Confidence 36999999999721236699999999999885
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=62.00 E-value=1.1 Score=38.76 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=26.8
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ ..|..|.|+.+++.+|++
T Consensus 33 ~~gip~~~q~L~--~~g~~L~d~~tL~~~~i~ 62 (152)
T 3b08_A 33 KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQ 62 (152)
T ss_dssp HHCCCGGGEEEE--ETTEECCTTSBTGGGTCC
T ss_pred HHCcChHHeEEE--ECCeECcCcccHHHhccC
Confidence 479999999999 788789999999999986
No 79
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=59.46 E-value=0.94 Score=36.50 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=25.4
Q ss_pred ccCCch-HHHHHHhhhcCCCCCCcchhhhc--ccc
Q 008156 3 CEGATS-VRALVLQSLKNGFLPHMKWVSAS--GLL 34 (576)
Q Consensus 3 ~~~v~~-~r~k~~~~~~~~~l~~~~~~~~~--~~~ 34 (576)
++|+|| ++|+|+ ..|.+|+|+.+++.+ +++
T Consensus 59 ~~g~pp~~~QrLI--y~Gk~L~D~~tL~~y~~~I~ 91 (99)
T 2kdb_A 59 YPSKPLTKDQRLV--YSGRLLPDHLQLKDILRKQD 91 (99)
T ss_dssp STTCCCTTTCCEE--ETTEEECTTSBTHHHHTTTC
T ss_pred hcCCCChhhEEEE--ECCEECCCCCCHHHHhcCCC
Confidence 467775 999999 888899999999988 775
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=57.41 E-value=1.8 Score=37.86 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=26.4
Q ss_pred ccCCchHHHHHHhhh-cCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSL-KNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~-~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+. . .|..|+|+.+++.++++
T Consensus 35 ~~gip~~~QrL~~-~~~g~~L~d~~tL~~y~i~ 66 (159)
T 3rt3_B 35 KIGVHAFQQRLAV-HPSGVALQDRVPLASQGLG 66 (159)
T ss_dssp HHCCCGGGEEEEE-ETTCCBCCTTSCGGGGTCC
T ss_pred HhCCCHHHEEEEE-cCCCCCCCCCCCHHHcCCC
Confidence 4799999999982 2 46689999999999997
No 81
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=56.39 E-value=1.3 Score=33.62 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=26.4
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|+|+++|+++ ..|..|.|+.+++.+++.
T Consensus 37 ~gi~~~~qrL~--~~G~~L~d~~tl~~~~i~ 65 (79)
T 2uyz_B 37 QGVPMNSLRFL--FEGQRIADNHTPKELGME 65 (79)
T ss_dssp HTCCGGGEEEE--ETTEECCTTCCHHHHTCC
T ss_pred HCCCcccEEEE--ECCEEeCCCCCHHHcCCC
Confidence 69999999999 788899999999999986
No 82
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.28 E-value=2.1 Score=34.03 Aligned_cols=30 Identities=7% Similarity=-0.071 Sum_probs=24.6
Q ss_pred ccCCchHHHHHHhhhcC--C-----CCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKN--G-----FLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~--~-----~l~~~~~~~~~~~~ 34 (576)
.+||||++|+|. ..+ | ++.|+..++..|++
T Consensus 41 ~~gip~~~qrL~--~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 41 VVGSPASCMELE--LYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp HTCSCTTTCBCE--EECSSSCEEEECCCSSSBTTSSSCC
T ss_pred HHCCCHHHeEEE--EeCCCCccccccCCCcCCHhHCCCC
Confidence 589999999999 665 3 25788899988886
No 83
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=52.42 E-value=1.5 Score=35.06 Aligned_cols=30 Identities=7% Similarity=-0.149 Sum_probs=24.5
Q ss_pred ccCCchHHHHHHhhhcC-C-----CCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKN-G-----FLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~-~-----~l~~~~~~~~~~~~ 34 (576)
.|||||++|+|+ ..+ | ++.|+.+++..|++
T Consensus 50 ~~GiP~~~QrL~--~~~~g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 50 LTGGCAGTMKVQ--VFKGDTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp HHCSCTTTEEEE--EEETTEEEEECCCTTSBHHHHCCS
T ss_pred HHCcCHHHeEEE--EecCCcccceeCCCCCCHhHCCcC
Confidence 589999999999 664 3 35888899999886
No 84
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=51.56 E-value=2 Score=43.34 Aligned_cols=30 Identities=3% Similarity=-0.078 Sum_probs=27.9
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|||+++|+|+ .+|.+|+|+.+++.++|+
T Consensus 43 ~~gip~~~QrLi--y~GK~L~D~~tL~dygI~ 72 (368)
T 1oqy_A 43 RDAFPVAGQKLI--YAGKILSDDVPIRDYRID 72 (368)
T ss_dssp SSSCCSTEEEEE--SSSSEECSSSBTTTTCCC
T ss_pred cCCCChhheEEE--ECCeecCCcCCHHHcCCC
Confidence 579999999999 888899999999999987
No 85
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=48.63 E-value=2.2 Score=34.68 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=23.0
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.|+||++|++. ..+-++.|+.++...|++
T Consensus 60 ~Gipp~~QRli--~ggkll~D~~TL~~ygI~ 88 (105)
T 4dbg_A 60 YGFPPVLQQWV--IGQRLARDQETLHSHGVR 88 (105)
T ss_dssp HCCCGGGEEEE--ETTEEECTTCBTGGGTCC
T ss_pred hCCCHHHEEEe--ccCeEccCcCcHHHcCCC
Confidence 69999999955 444467889999999984
No 86
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=46.53 E-value=2.4 Score=33.80 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=26.5
Q ss_pred cCCchHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGATSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|||+++|+|+ ..|..|.|+.+++.++++
T Consensus 55 ~gip~~~qrLi--f~Gk~L~d~~tl~dy~i~ 83 (97)
T 1wyw_B 55 QGVPMNSLRFL--FEGQRIADNHTPKELGME 83 (97)
T ss_dssp HTCCGGGEEEE--ETTEECCTTCCHHHHTCC
T ss_pred HCCChhhEEEE--ECCeEcCCCCCHHHCCCC
Confidence 69999999999 788899999999999986
No 87
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=43.63 E-value=19 Score=30.40 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=29.5
Q ss_pred EEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeec--hhhhc
Q 008156 502 RLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVS--VNDVL 561 (576)
Q Consensus 502 ~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~--~~~v~ 561 (576)
..+|=|.-.| .+|-+-++- ....||.+||+...+.+ .++|+
T Consensus 108 DfhAgIflkg---~eHAVFa~~----------------TS~GWyaiDDe~fypwtPdpsdVL 150 (167)
T 1qmy_A 108 DFHAGIFLKG---QEHAVFACV----------------TSNGWYAIDDEDFYPWTPDPSDVL 150 (167)
T ss_dssp GEEEEEEEET---TTEEEEEEC----------------CTTSSEEEETTEEEECCCCGGGEE
T ss_pred hhhhheeecC---CCceEEEEE----------------ccCceEEecccccccCCCChhhEE
Confidence 3444444444 489888887 47899999999999984 45554
No 88
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=41.24 E-value=4.1 Score=34.21 Aligned_cols=30 Identities=13% Similarity=-0.008 Sum_probs=26.4
Q ss_pred ccCCch--HHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGATS--VRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~--~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|+|+ ++|+|+ ..|.+|.|+.+++..+++
T Consensus 55 kegiP~~~~qQrLI--y~GK~LeD~~TLsdy~I~ 86 (126)
T 1se9_A 55 KENGPKTVKEVKLI--SAGKVLENSKTVKDYRSP 86 (126)
T ss_dssp CSSSCCSGGGEEEE--ETTEECCTTSBGGGGSCC
T ss_pred cccCCCChhhEEEE--ECCeECcCCCcHHHcCCC
Confidence 368986 899999 788899999999999986
No 89
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=40.69 E-value=23 Score=30.13 Aligned_cols=14 Identities=14% Similarity=0.529 Sum_probs=11.7
Q ss_pred eeeceEEecCCCCc
Q 008156 227 ILGSILTCQSCLSQ 240 (576)
Q Consensus 227 ~~~s~i~C~~C~~~ 240 (576)
...-..+|..||+.
T Consensus 66 ~~p~~~~C~~CG~~ 79 (139)
T 3a43_A 66 EEEAVFKCRNCNYE 79 (139)
T ss_dssp EECCEEEETTTCCE
T ss_pred ecCCcEECCCCCCE
Confidence 66778999999974
No 90
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=40.19 E-value=3.2 Score=33.15 Aligned_cols=30 Identities=7% Similarity=-0.065 Sum_probs=23.9
Q ss_pred ccCCchHHHHHHhhhcCC-------CCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNG-------FLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~-------~l~~~~~~~~~~~~ 34 (576)
.+||||+.|+|. ..+. ++.|+.+++..+++
T Consensus 49 ~~Gip~~~QrLi--~~g~~g~~~~~L~~D~~tL~~Y~I~ 85 (97)
T 2kj6_A 49 KCGTSVNSMALE--LYDDSGSKVAVLSDDSRPLGFFSPF 85 (97)
T ss_dssp HHCCCTTSEEEE--EECSSSCBCCCSSGGGSCHHHHCCC
T ss_pred HHCcCHHHeEEE--EecCCCcccceecCCcCCHHHCCCC
Confidence 589999999999 6652 25788889888886
No 91
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=37.32 E-value=4.2 Score=33.93 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=24.2
Q ss_pred ccCCchHHHHHHhhhcC--C-----CCCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKN--G-----FLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~--~-----~l~~~~~~~~~~~~ 34 (576)
.+||||.+|+|. ..+ | ++.|+.+++..|++
T Consensus 40 ~~Gip~~~qrL~--~~g~~~~~~~~l~~D~~tL~~y~i~ 76 (122)
T 1t0y_A 40 VVGTTVDSMRIQ--LFDGDDQLKGELTDGAKSLKDLGVR 76 (122)
T ss_dssp HHCCCTTTEEEE--EECSSSSEEEECCCCSSBTTTTTCC
T ss_pred HhCCCHHHeEEE--EecCCCccccccCCCcCCHHHCCCC
Confidence 589999999999 665 2 24788889989886
No 92
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=36.86 E-value=5.5 Score=30.78 Aligned_cols=32 Identities=9% Similarity=-0.014 Sum_probs=22.4
Q ss_pred ccCCchHHHHHHhhhcCCCC--C-Ccchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNGFL--P-HMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l--~-~~~~~~~~~~~ 34 (576)
.+|||++||+|+-..++..+ . ++.+++.+||+
T Consensus 33 ~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~ 67 (86)
T 2kzr_A 33 ITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQ 67 (86)
T ss_dssp HTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCC
T ss_pred HhCCCccceEEEeCCCCcccccCCCCCCHHHcCCC
Confidence 47999999999831122344 3 56788888885
No 93
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=36.36 E-value=87 Score=25.23 Aligned_cols=56 Identities=9% Similarity=0.136 Sum_probs=44.2
Q ss_pred CceEEEeEEEEee---cC-CC------CCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCceEE
Q 008156 498 TYLYRLASVVEHF---GR-VG------SGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASL 567 (576)
Q Consensus 498 ~~~Y~L~aVV~H~---G~-~~------sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYl 567 (576)
....++...|.|- |- .+ -.||+.++. +.+||..|-.+++....+.++|+
T Consensus 17 g~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~---------------------~~~ng~~v~~~~~~~~iS~NP~~ 75 (108)
T 2oxg_Z 17 GETVTVKALISHKMESGQRKDADGKLIPRSIINRFT---------------------CELNGVNVVDVAIDPAVSTNPYF 75 (108)
T ss_dssp TEEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE---------------------EEETTEEEEEEEECTTBCSSCEE
T ss_pred CCCEEEEEEeECCCccccccCcCCCccchHheEEEE---------------------EEECCEEEEEEEeCCccccCCeE
Confidence 3467888899995 33 22 279999988 34899999999999999999999
Q ss_pred EEEEecc
Q 008156 568 LFYERII 574 (576)
Q Consensus 568 LfY~rv~ 574 (576)
=|+-+..
T Consensus 76 ~F~~~~~ 82 (108)
T 2oxg_Z 76 EFDAKVD 82 (108)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9987653
No 94
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=35.61 E-value=5.8 Score=33.26 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=26.4
Q ss_pred ccCC--chHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 3 CEGA--TSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v--~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
.+|+ |+++|+|. ..|.+|+|+.+++.++++
T Consensus 56 ke~ip~~~~~qrLI--y~GK~LeD~~TL~~y~I~ 87 (125)
T 2gow_A 56 EEEQVSSPNILRLI--YQGRFLHGNVTLGALKLP 87 (125)
T ss_dssp CCCTTCCGGGEEEE--SSSSEEESSCBTGGGCCC
T ss_pred ccCCCCChHHEEEE--ECCcCCCCCCcHHHcCCC
Confidence 3678 49999999 888899999999999986
No 95
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=29.40 E-value=1.3e+02 Score=24.08 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=43.9
Q ss_pred CceEEEeEEEEeecC--CC--------CCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhhccCceEE
Q 008156 498 TYLYRLASVVEHFGR--VG--------SGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASL 567 (576)
Q Consensus 498 ~~~Y~L~aVV~H~G~--~~--------sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYl 567 (576)
....++...|.|-=. .. -.||+.++. +.+||..|-.+++....+.++|+
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~---------------------~~~ng~~v~~~~~~~~iS~nP~~ 74 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVE---------------------VYFEGEKVAEARPGPSTSANPLY 74 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE---------------------EEETTEEEEEECCCSSCCSSCEE
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEE---------------------EEECCEEEEEEEeCCccccCCeE
Confidence 346788889999533 11 279999988 34899999999999899999999
Q ss_pred EEEEecc
Q 008156 568 LFYERII 574 (576)
Q Consensus 568 LfY~rv~ 574 (576)
=|+-+..
T Consensus 75 ~F~~~~~ 81 (107)
T 1v8h_A 75 AFKFKAE 81 (107)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9987653
No 96
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=26.82 E-value=12 Score=30.32 Aligned_cols=30 Identities=7% Similarity=-0.171 Sum_probs=23.6
Q ss_pred ccCCchHHHHHHhhhcCC-----------C----CCCcchhhhcccc
Q 008156 3 CEGATSVRALVLQSLKNG-----------F----LPHMKWVSASGLL 34 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~-----------~----l~~~~~~~~~~~~ 34 (576)
.+|||+++|.|. +.+. . +.|+.+++.+||+
T Consensus 40 ~~gip~~~QrL~--~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 40 QLQIPIHNQTLS--TNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp HSCCCTTTCCCB--SSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred HhCcCcccCEEE--ECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 479999999996 4443 3 5788889999996
No 97
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=23.20 E-value=17 Score=32.69 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=0.0
Q ss_pred ccCCchHHHHHHhhhcCCCCCCcchhh
Q 008156 3 CEGATSVRALVLQSLKNGFLPHMKWVS 29 (576)
Q Consensus 3 ~~~v~~~r~k~~~~~~~~~l~~~~~~~ 29 (576)
.+|||++.|+|+ ..|..|.|+.+++
T Consensus 33 keGIP~~qQRLI--f~GK~LeD~~TLs 57 (189)
T 2xzm_9 33 DMGFEIDMMTLV--NNGFIAPNTELVT 57 (189)
T ss_dssp ---------------------------
T ss_pred HhCcChhHEEEE--ecCeECCCCCccc
Confidence 479999999999 7888888877666
No 98
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.95 E-value=10 Score=31.34 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=25.3
Q ss_pred cCC--chHHHHHHhhhcCCCCCCcchhhhcccc
Q 008156 4 EGA--TSVRALVLQSLKNGFLPHMKWVSASGLL 34 (576)
Q Consensus 4 ~~v--~~~r~k~~~~~~~~~l~~~~~~~~~~~~ 34 (576)
+|+ |++.|+|. ..|-+|+|+.+++.++++
T Consensus 56 e~~p~p~~qqrLI--y~GK~LeD~~TL~~y~I~ 86 (116)
T 1wgh_A 56 EEQVSSPNILRLI--YQGRFLHGNVTLGALKLP 86 (116)
T ss_dssp CCCCCCTTTEEEE--ETTEEECSSCBTTTTTCC
T ss_pred cCCCCChHHEEEE--ECCcCCCCCCcHHHcCCC
Confidence 465 69999999 888899999999999875
No 99
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=20.22 E-value=64 Score=28.94 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=34.3
Q ss_pred EEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEEeCCceeeechhhh--------ccCceEEEEEEe
Q 008156 502 RLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDV--------LAAEASLLFYER 572 (576)
Q Consensus 502 ~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v--------~~~~aYlLfY~r 572 (576)
...|+|++.. -|++|.+|. ++.||-+|=..-.+.-..+. +..+.|=+|-.+
T Consensus 109 ~~~~FI~N~~----~HWfaiRki----------------gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~ 167 (191)
T 3o65_A 109 NERSFICNYK----QHWFTIRKF----------------GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVK 167 (191)
T ss_dssp GCCEEEEEES----SCEEEEEEE----------------TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEE
T ss_pred hhhhhhhccc----cceeeEEec----------------CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEc
Confidence 3579999985 599999994 78999998765444422221 123467776554
Done!