BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008157
         (576 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
           Lgtc
          Length = 311

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 443 NPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGET 502
           N +++SI  + R  L E     +KVL+LD DV+V+  L+ LW  DL     GA   C + 
Sbjct: 75  NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---CIDL 131

Query: 503 FHRFDRYLNFSNPLISKNFDPRACGWAY---GMNIFDLDEWRRQNITDVYHTWQKMVSDV 559
           F   +R   +   +        A G  Y   G+ + +L +WRR +I  +   W +   DV
Sbjct: 132 F--VERQEGYKQKI------GMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDV 183

Query: 560 L 560
           +
Sbjct: 184 M 184


>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
           With Mn And Udp-2f-Galactose
 pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
           With Donor And Acceptor Sugar Analogs
          Length = 311

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 443 NPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGA-VETCGE 501
           N +++SI  + R  L E     +KVL+LD DV+V+  L+ LW  DL     GA ++   E
Sbjct: 75  NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE 134

Query: 502 TFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDV 559
               + + +  ++     N          G+ + +L +WRR +I      W +   DV
Sbjct: 135 RQEGYKQKIGXADGEYYFN---------AGVLLINLKKWRRHDIFKXSSEWVEQYKDV 183


>pdb|3CVO|A Chain A, Crystal Structure Of A Methyltransferase-Like Protein
           (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A
           Resolution
 pdb|3CVO|B Chain B, Crystal Structure Of A Methyltransferase-Like Protein
           (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A
           Resolution
 pdb|3CVO|C Chain C, Crystal Structure Of A Methyltransferase-Like Protein
           (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A
           Resolution
 pdb|3CVO|D Chain D, Crystal Structure Of A Methyltransferase-Like Protein
           (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A
           Resolution
          Length = 202

 Score = 34.3 bits (77), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 356 NSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRAT 395
            STV  A+ P  HV  + +DR      + W  ANPP   T
Sbjct: 41  GSTVVAAELPGKHVTSVESDRAWARXXKAWLAANPPAEGT 80


>pdb|1P99|A Chain A, 1.7a Crystal Structure Of Protein Pg110 From
           Staphylococcus Aureus
          Length = 295

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 226 KEVQRALGDATKDSDLP-RIANDRLKAMEQSLAK 258
           KE Q+AL +  KD + P  ++ D +KA+E SLAK
Sbjct: 262 KEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK 295


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,272,074
Number of Sequences: 62578
Number of extensions: 640562
Number of successful extensions: 1957
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1952
Number of HSP's gapped (non-prelim): 6
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)