Query 008157
Match_columns 576
No_of_seqs 310 out of 1144
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 19:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 1.8E-30 6.2E-35 262.0 11.7 177 338-559 5-188 (276)
2 1g9r_A Glycosyl transferase; a 100.0 4.6E-29 1.6E-33 254.4 14.2 194 339-574 1-210 (311)
3 1ll2_A Glycogenin-1; protein-s 99.5 1.6E-14 5.5E-19 149.7 11.7 149 338-555 4-155 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.3 2.3E-12 7.9E-17 129.9 9.9 165 341-574 8-191 (263)
5 3v1a_A Computational design, M 48.6 17 0.00058 27.8 3.6 37 195-231 6-42 (48)
6 1yzm_A FYVE-finger-containing 39.7 24 0.00081 27.3 3.3 38 194-231 6-43 (51)
7 1z0k_B FYVE-finger-containing 38.1 24 0.00083 28.8 3.3 38 194-231 24-61 (69)
8 1z0j_B FYVE-finger-containing 34.0 33 0.0011 27.3 3.3 38 194-231 13-50 (59)
9 3dfz_A SIRC, precorrin-2 dehyd 25.8 1.8E+02 0.0062 28.1 7.9 79 207-299 143-221 (223)
10 2lse_A Four helix bundle prote 29.1 17 0.00058 30.4 0.0 56 222-280 6-61 (101)
11 2dl1_A Spartin; SPG20, MIT, st 21.0 3.1E+02 0.011 24.4 7.6 83 190-289 10-96 (116)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=99.96 E-value=1.8e-30 Score=261.98 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=122.4
Q ss_pred ceEEEEEecc-c-cccccchhhhhcccCCCCceEEEEEeCCCCHHHH---HHHHhhCCCCCceeEEeehhhhhhcccccc
Q 008157 338 LFHYALFSDN-V-LAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAM---RMWFLANPPGRATVQVQNIEEFTWLNSSYS 412 (576)
Q Consensus 338 ~iHIa~~sDN-v-laasVvInSiv~N~~~Pe~ivFHIVTD~~s~~am---k~WF~~n~~~~a~IeV~nie~F~wL~~~y~ 412 (576)
.+|||+++|+ + .+++|+|+|++.|+++ ++++|||++++++.+.. +.++.. .+..+++..+.
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~---~~~~i~~~~~~---------- 70 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKK---FSYTLYPIRAT---------- 70 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHT---TTCEEEEEECC----------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHH---cCCEEEEEEeC----------
Confidence 5899999995 5 6899999999999986 57999999999987643 333321 12233332221
Q ss_pred hhhhhhccccceEEEecccccCCccccccCCCCcchhhhhhhhhhhcccCC-CCeEEEEecceeeecCchHHhccCCCCC
Q 008157 413 PVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR-LNKVLFLDDDVVVQKDLSGLWSIDLKGK 491 (576)
Q Consensus 413 PvLkql~~~~~~~y~F~~~~~~s~~~~k~r~p~y~S~~~y~Rf~LPeLlP~-ldKVLYLD~DvIV~~DLseLw~iDL~gk 491 (576)
...+.. .....+++..+|+||++|+++|. ++||||||+|+||++||++||++|++|+
T Consensus 71 -----------------~~~~~~-----~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~ 128 (276)
T 3tzt_A 71 -----------------DDLFSF-----AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDY 128 (276)
T ss_dssp -----------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTS
T ss_pred -----------------HHHHhc-----CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCC
Confidence 100000 01124678999999999999995 9999999999999999999999999999
Q ss_pred eeEEeeccccc-ccccccccccCChhhhcCCCCCCCceeechhhccHHHHHhhCHHHHHHHHHHHccCc
Q 008157 492 VNGAVETCGET-FHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDV 559 (576)
Q Consensus 492 viAAVedc~~~-f~ry~~yLn~SnP~i~~~f~~~~cYFNSGVmLiDL~kWRk~nit~k~~~w~kln~d~ 559 (576)
++|||+||+.. +.++.. ..++....||||||||||||++||+.++++++++|++.+..+
T Consensus 129 ~~aav~d~~~~~~~~~~~---------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~ 188 (276)
T 3tzt_A 129 ILAAASHTGKTDMANNVN---------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMN 188 (276)
T ss_dssp SEEEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC---
T ss_pred eEEEEEecccchHHHHHH---------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccc
Confidence 99999999743 111111 123444469999999999999999999999999999887643
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=99.96 E-value=4.6e-29 Score=254.43 Aligned_cols=194 Identities=20% Similarity=0.307 Sum_probs=140.8
Q ss_pred eEEEEEecc-c-cccccchhhh-hcccCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceeEEeehhhhhhcccccchhh
Q 008157 339 FHYALFSDN-V-LAAAVVVNST-VTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVL 415 (576)
Q Consensus 339 iHIa~~sDN-v-laasVvInSi-v~N~~~Pe~ivFHIVTD~~s~~amk~WF~~n~~~~a~IeV~nie~F~wL~~~y~PvL 415 (576)
+|||+++|. + .+++|+++|+ +.|+. .+++|||++++++.+..+..-..-...+..|++..++
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~------------- 65 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN------------- 65 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECC-------------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcC-------------
Confidence 699999995 5 6899999999 99875 4799999999998765332111100011223222221
Q ss_pred hhhccccceEEEecccccCCccccccCCCCcchhhhhhhhhhhcccCCCCeEEEEecceeeecCchHHhccCCCCCeeEE
Q 008157 416 KQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGA 495 (576)
Q Consensus 416 kql~~~~~~~y~F~~~~~~s~~~~k~r~p~y~S~~~y~Rf~LPeLlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAA 495 (576)
..... ... ....+++..+|+||++|++||+++||||||+|+||++||++||++|++|+++||
T Consensus 66 --------------~~~~~---~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aa 127 (311)
T 1g9r_A 66 --------------PEDFA---GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA 127 (311)
T ss_dssp --------------GGGGT---TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEE
T ss_pred --------------HHHHh---cCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEE
Confidence 11000 000 113577889999999999999999999999999999999999999999999999
Q ss_pred eecccccc-cccccccccCChhhhcCCCCCCCceeechhhccHHHHHhhCHHHHHHHHHHHccCcccc------------
Q 008157 496 VETCGETF-HRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSS------------ 562 (576)
Q Consensus 496 Vedc~~~f-~ry~~yLn~SnP~i~~~f~~~~cYFNSGVmLiDL~kWRk~nit~k~~~w~kln~d~~Lw------------ 562 (576)
|+||.... ..+.. ..++.+..|||||||||||+++||+.++++++++|++.+.....|
T Consensus 128 v~d~~~~~~~~~~~---------~~~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~ 198 (311)
T 1g9r_A 128 SIDLFVERQEGYKQ---------KIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKG 198 (311)
T ss_dssp EECHHHHTSTTHHH---------HTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTT
T ss_pred EeccchhhhHHHHH---------hcCCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHcC
Confidence 99986321 01111 124445679999999999999999999999999999876654322
Q ss_pred cccccCCccccc
Q 008157 563 WLASLPNFINYF 574 (576)
Q Consensus 563 klGsLPp~Ll~F 574 (576)
+...||+.|++.
T Consensus 199 ~~~~Lp~~wN~~ 210 (311)
T 1g9r_A 199 GVCYANSRFNFM 210 (311)
T ss_dssp SEEEECGGGSBC
T ss_pred CEEEcChhhccC
Confidence 356888888764
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.54 E-value=1.6e-14 Score=149.69 Aligned_cols=149 Identities=13% Similarity=0.166 Sum_probs=96.8
Q ss_pred ceEEEEEecc-c-cccccchhhhhcccCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceeEEeehhhhhhcccccchhh
Q 008157 338 LFHYALFSDN-V-LAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVL 415 (576)
Q Consensus 338 ~iHIa~~sDN-v-laasVvInSiv~N~~~Pe~ivFHIVTD~~s~~amk~WF~~n~~~~a~IeV~nie~F~wL~~~y~PvL 415 (576)
..+|++++|. + .++.|++.|+..|+++ ..++| +++++++....+..-... . .+..++.. .... +
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~~l---~~~~-~-- 69 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----D--EVITVDIL---DSGD-S-- 69 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----S--EEEECCTT---STTS-T--
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEeec---CCcc-h--
Confidence 5688888874 5 5799999999999875 35666 677788765433221110 1 12222110 0000 0
Q ss_pred hhhccccceEEEecccccCCccccc-cCCCCcchhhhhhhhhhhcccCCCCeEEEEecceeeecCchHHhccCCCCCeeE
Q 008157 416 KQLNSQSMIDYYFRAHRANSDSNLK-FRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNG 494 (576)
Q Consensus 416 kql~~~~~~~y~F~~~~~~s~~~~k-~r~p~y~S~~~y~Rf~LPeLlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviA 494 (576)
.+.. ..++ ....+|+||++|++ ++++||||||+|+||.+||++||+++ .+|
T Consensus 70 ---------------------~~~~~~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~a 121 (333)
T 1ll2_A 70 ---------------------AHLTLMKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELS 121 (333)
T ss_dssp ---------------------THHHHHHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSE
T ss_pred ---------------------hhccccccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----cee
Confidence 0000 0111 23578999999996 78999999999999999999999987 478
Q ss_pred EeecccccccccccccccCChhhhcCCCCCCCceeechhhccHHHHHhhCHHHHHHHHHHH
Q 008157 495 AVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKM 555 (576)
Q Consensus 495 AVedc~~~f~ry~~yLn~SnP~i~~~f~~~~cYFNSGVmLiDL~kWRk~nit~k~~~w~kl 555 (576)
||+|++ | .+||||||||||+.. +..+++.++++.
T Consensus 122 Av~d~~-----------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~ 155 (333)
T 1ll2_A 122 AAPDPG-----------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASE 155 (333)
T ss_dssp EEECSS-----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHH
T ss_pred EEecCC-----------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHh
Confidence 887752 1 369999999997742 223455555543
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.33 E-value=2.3e-12 Score=129.93 Aligned_cols=165 Identities=14% Similarity=0.147 Sum_probs=103.9
Q ss_pred EEEEec-cc-cccccchhhhhcccCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceeEEeehhhhhhcccccchhhhhh
Q 008157 341 YALFSD-NV-LAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQL 418 (576)
Q Consensus 341 Ia~~sD-Nv-laasVvInSiv~N~~~Pe~ivFHIVTD~~s~~amk~WF~~n~~~~a~IeV~nie~F~wL~~~y~PvLkql 418 (576)
+.+++| +| .++.|++.|+..|++. ..+++ +++++++....+..-.. . .++..++.. .... +.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~----~--~~vi~V~~l---~~~~-~~---- 71 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETV----F--DEVIMVDVL---DSGD-SA---- 71 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH----S--SEEEECCCC---CCCC-HH----
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHc----C--CeEEEeeec---CCcc-hh----
Confidence 445566 45 5899999999998875 23444 56788876543321111 0 112222110 0000 00
Q ss_pred ccccceEEEecccccCCccccc-cCCCCcchhhhhhhhhhhcccCCCCeEEEEecceeeecCchHHhccCCCCCeeEEee
Q 008157 419 NSQSMIDYYFRAHRANSDSNLK-FRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVE 497 (576)
Q Consensus 419 ~~~~~~~y~F~~~~~~s~~~~k-~r~p~y~S~~~y~Rf~LPeLlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAAVe 497 (576)
+.+ ...|.+ ..+|.|++++.+. +++||||||+|++|.+||.+||+++ .+|||.
T Consensus 72 -------------------~~~~~~rp~~--~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~ 125 (263)
T 3u2u_A 72 -------------------HLTLMKRPEL--GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAP 125 (263)
T ss_dssp -------------------HHHHTTCTTG--GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEE
T ss_pred -------------------hhhhhcCcch--hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEec
Confidence 000 011222 3678999999987 4999999999999999999999987 478887
Q ss_pred cccccccccccccccCChhhhcCCCCCCCceeechhhccHHHHHhhCHHHHHHHHHHHccCcc----------c--c---
Q 008157 498 TCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVL----------S--S--- 562 (576)
Q Consensus 498 dc~~~f~ry~~yLn~SnP~i~~~f~~~~cYFNSGVmLiDL~kWRk~nit~k~~~w~kln~d~~----------L--w--- 562 (576)
|.+ | .+||||||||||++ .++.+++.++++.+.... + |
T Consensus 126 d~~-----------~------------~~~fNsGv~li~p~----~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~~w~~~ 178 (263)
T 3u2u_A 126 DPG-----------W------------PDCFNSGVFVYQPS----VETYNQLLHLASEQGSFDGGDQGILNTFFSSWATT 178 (263)
T ss_dssp CTT-----------S------------TTSEEEEEEEECCC----HHHHHHHHHHHHHHCCTTSSHHHHHHHHTTTTTTS
T ss_pred cCC-----------C------------CccccCeEEEEccc----HHHHHHHHHHHHhcCCCCcccHHHHHHHhcccccc
Confidence 753 1 36999999999985 356666777766433211 1 3
Q ss_pred -cccccCCccccc
Q 008157 563 -WLASLPNFINYF 574 (576)
Q Consensus 563 -klGsLPp~Ll~F 574 (576)
+...||..|++.
T Consensus 179 ~~~~~Lp~~yN~~ 191 (263)
T 3u2u_A 179 DIRKHLPFIYNLS 191 (263)
T ss_dssp CGGGBCCGGGSEE
T ss_pred CeeEeCCcccccc
Confidence 346788888864
No 5
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=48.60 E-value=17 Score=27.78 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=33.6
Q ss_pred hhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 008157 195 LKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231 (576)
Q Consensus 195 l~dql~~a~~Y~~~a~~~~~~~l~~el~~~i~e~~~~ 231 (576)
|+.|+++-+.|+.-|+..+.-.=+.=|.++++|+++-
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E 42 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHE 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988888999999999753
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=39.71 E-value=24 Score=27.29 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=33.4
Q ss_pred hhhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 008157 194 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231 (576)
Q Consensus 194 ~l~dql~~a~~Y~~~a~~~~~~~l~~el~~~i~e~~~~ 231 (576)
=|.+|+++-+.|..-|+..+.-.=+.=|..+++|++.-
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~e 43 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDE 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 37899999999999999999988888888999888753
No 7
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=38.08 E-value=24 Score=28.83 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=34.2
Q ss_pred hhhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 008157 194 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231 (576)
Q Consensus 194 ~l~dql~~a~~Y~~~a~~~~~~~l~~el~~~i~e~~~~ 231 (576)
=|.+|+++-+.|..-|+..+...=+.=|..+++|+++-
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 48899999999999999999988888899999998853
No 8
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=33.99 E-value=33 Score=27.28 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=33.7
Q ss_pred hhhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 008157 194 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231 (576)
Q Consensus 194 ~l~dql~~a~~Y~~~a~~~~~~~l~~el~~~i~e~~~~ 231 (576)
-|..|+++-|+|.--|+..+...=+.=|..+++|++.-
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~e 50 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHT 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 58899999999999999999988888889999988753
No 9
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=25.77 E-value=1.8e+02 Score=28.05 Aligned_cols=79 Identities=8% Similarity=0.051 Sum_probs=49.9
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHhhccCCcChHHHHHHHHHHHHHHHHHHHH
Q 008157 207 SLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRV 286 (576)
Q Consensus 207 ~~a~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~klr~~l~~~ee~~~~ 286 (576)
+|.-......|++.||++|.+. ||++..+.++.|..+=.+.|+...|-...-.-++.++ -.+-+..
T Consensus 143 aIST~G~sP~la~~iR~~ie~~------------lp~~~~~~~~~~~~~R~~vk~~~~~~~~Rr~~~~~~~--~~~~~~~ 208 (223)
T 3dfz_A 143 AISTDGASPLLTKRIKEDLSSN------------YDESYTQYTQFLYECRVLIHRLNVSKSRKHELLTEII--DDQYRLS 208 (223)
T ss_dssp EEECTTSCHHHHHHHHHHHHHH------------SCTHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHTC--SHHHHHC
T ss_pred EEECCCCCcHHHHHHHHHHHHH------------ccHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh--cchhhcC
Confidence 4444556678889888888776 5666666666666666666666666555444444443 1223336
Q ss_pred HHHhHHHHHHHhh
Q 008157 287 HKKQTLFLTQLTA 299 (576)
Q Consensus 287 ~~~q~~~~~~laa 299 (576)
..+|..|+..|..
T Consensus 209 ~~~~~~~~~~l~~ 221 (223)
T 3dfz_A 209 LVKQREFLQQIEK 221 (223)
T ss_dssp HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHh
Confidence 6777888877643
No 10
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.15 E-value=17 Score=30.39 Aligned_cols=56 Identities=14% Similarity=0.371 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHhhccCCcChHHHHHHHHHHHHHH
Q 008157 222 RLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHST 280 (576)
Q Consensus 222 ~~~i~e~~~~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~klr~~l~~~ 280 (576)
+.-+..++.+|.+.+.++ |.++.++|.++..-+..--.. -|.++++.|.|+-+..|
T Consensus 6 kklleklekildevtdga--pdearerieklakdvkdelee-gdaknmiekfrdemeqm 61 (101)
T 2lse_A 6 KKLLEKLEKILDEVTDGA--PDEARERIEKLAKDVKDELEE-GDAKNMIEKFRDEMEQM 61 (101)
Confidence 334556778888888877 888888888776555333333 38899999988755443
No 11
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.97 E-value=3.1e+02 Score=24.36 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=52.4
Q ss_pred hHHHhhhhHHHHHHhhcccc---ccCCchHHHHHHH-HHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHhhccCCcC
Q 008157 190 FRVRQLKDQLIKAKVYLSLP---AMRNNANFVRELR-LRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDD 265 (576)
Q Consensus 190 ~~~~~l~dql~~a~~Y~~~a---~~~~~~~l~~el~-~~i~e~~~~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d 265 (576)
..++.+|+.=-.|..|++-| -+.++-+.|.+|. +-|+++++.|+--..+.+-....-++.
T Consensus 10 ~~l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~A---------------- 73 (116)
T 2dl1_A 10 AEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESA---------------- 73 (116)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH----------------
Confidence 45677888887788886433 2346677887775 459999998886654433222322222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 008157 266 CAAVVKKLRAMLHSTEEQLRVHKK 289 (576)
Q Consensus 266 ~~~~~~klr~~l~~~ee~~~~~~~ 289 (576)
..+..||+..+.++.+++....+
T Consensus 74 -r~lq~KM~~nL~~v~~RL~~Le~ 96 (116)
T 2dl1_A 74 -RQMQQKMKETLQNVRTRLEILEK 96 (116)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHh
Confidence 23456777788888888754443
Done!