Query 008158
Match_columns 575
No_of_seqs 166 out of 1891
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 19:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 1.2E-31 4.2E-36 289.5 27.2 448 11-555 7-478 (491)
2 2xut_A Proton/peptide symporte 100.0 2.4E-30 8.4E-35 281.8 25.3 482 13-557 8-511 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.2E-27 4.2E-32 254.6 21.6 401 16-551 27-436 (451)
4 4gc0_A D-xylose-proton symport 99.9 3.8E-26 1.3E-30 246.3 18.7 413 52-563 54-477 (491)
5 3o7q_A L-fucose-proton symport 99.9 6.9E-25 2.4E-29 232.6 27.2 176 15-224 24-228 (438)
6 2gfp_A EMRD, multidrug resista 99.9 1.4E-23 4.7E-28 218.3 9.0 165 22-220 5-169 (375)
7 2cfq_A Lactose permease; trans 99.9 1.4E-22 4.9E-27 214.5 7.1 386 17-549 7-400 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 3.9E-12 1.3E-16 134.6 14.1 178 17-225 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 4.1E-11 1.4E-15 126.2 15.8 169 17-221 258-428 (438)
10 2cfq_A Lactose permease; trans 99.2 4.6E-11 1.6E-15 125.8 9.4 162 31-225 234-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 2.1E-10 7.2E-15 122.9 13.6 185 19-228 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 4.7E-09 1.6E-13 112.3 17.5 183 17-227 276-464 (491)
13 2gfp_A EMRD, multidrug resista 98.7 4.2E-09 1.4E-13 108.6 2.1 161 18-212 200-363 (375)
14 2xut_A Proton/peptide symporte 98.1 6.9E-06 2.4E-10 88.4 9.9 133 374-547 61-197 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.2e-31 Score=289.50 Aligned_cols=448 Identities=16% Similarity=0.234 Sum_probs=293.6
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-----hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhh-cccch
Q 008158 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKE-----YHMNQTSAANILNIWGGVTNFAPLLGAFISDT-YIGRF 84 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~-~~Grr 84 (575)
..+.++|..+.+....+++.+++|++..+++.|++++ +|++..+.+++.+.+.++..++.+++|+++|| + |||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r 85 (491)
T 4aps_A 7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR 85 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence 3455677888888899999999999999999999998 99999999999999999999999999999999 6 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCC
Q 008158 85 KTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 164 (575)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 164 (575)
+++..+.++..++.+++++++ +.+.++++|++.|+|.+...++..++++|++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF--------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC--------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 999999999999999888765 556789999999999999999999999999998
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEee---CCCCC-cch
Q 008158 165 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLV---EPEGS-IFS 240 (575)
Q Consensus 165 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-~~~ 240 (575)
++ ++|+.++++++.+.++|..++|.+++++.+..|||+.|++.++..+++++++++..+++..+ ++++. ...
T Consensus 140 ~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4aps_A 140 HD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPE 215 (491)
T ss_dssp CT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHH
T ss_pred cc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccc
Confidence 66 45788899999999999999999999999989999999998777766666655443332211 11111 111
Q ss_pred hHHHHHHH-------------HHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCC
Q 008158 241 GIGQVLVA-------------AYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGT 307 (575)
Q Consensus 241 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (575)
+..+.... .....+. . +..+................
T Consensus 216 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~~~~~~~------ 264 (491)
T 4aps_A 216 EVKPLLVKVSLAVAGFIAIIVVMNLVGW--N-----------------------SLPAYINLLTIVAIAIPVFY------ 264 (491)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHHHHHHSS--C-----------------------CTTHHHHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC--c-----------------------ccccchhhhhHHHHHHHHHH------
Confidence 10000000 0000000 0 00000000000000000000
Q ss_pred CCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeecc-cccccCCCccccCccccccchhHhhHhhhhc
Q 008158 308 PVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKFQIPPGTVGVISMITIGLWLPF 386 (575)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 386 (575)
....|+... ....++++......++.....++..+.+..+....+.. ..+... ...+.......+..++..++
T Consensus 265 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 338 (491)
T 4aps_A 265 FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPF 338 (491)
T ss_dssp HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHH
T ss_pred HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHH
Confidence 000000000 01123334444444555555555555554443221111 111110 23455566677777777776
Q ss_pred ccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhh
Q 008158 387 YDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIG 466 (575)
Q Consensus 387 ~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~ 466 (575)
.+++ .||++||+. ...+.+.+|..+.+++++.+........ .....+.++.++.+++.+++.+...+.
T Consensus 339 ~~~l----~~r~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~ 406 (491)
T 4aps_A 339 FAWL----WTAWKKNQP--SSPTKFAVGLMFAGLSFLLMAIPGALYG------TSGKVSPLWLVGSWALVILGEMLISPV 406 (491)
T ss_dssp HHHH----HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHCC------CCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHH----HHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence 5554 888877743 4566777888888888777665432110 011245666777888899999999999
Q ss_pred hHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008158 467 QIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFL 546 (575)
Q Consensus 467 ~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~ 546 (575)
.++++.|.+|++.||+++|+.++...+|..+++.+.+++.+. ++.+.|...+++++++.++.+
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776542 234677777888887777777
Q ss_pred HHHhhcccc
Q 008158 547 YCARRYRYK 555 (575)
Q Consensus 547 ~~~~~~~~~ 555 (575)
++.++.+++
T Consensus 470 ~~~~~~~~~ 478 (491)
T 4aps_A 470 FLSKRIQGL 478 (491)
T ss_dssp HC-------
T ss_pred HHHHHHHHH
Confidence 665554433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=2.4e-30 Score=281.79 Aligned_cols=482 Identities=22% Similarity=0.346 Sum_probs=285.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhC------CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-cchH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYH------MNQTSAANILNIWGGVTNFAPLLGAFISDTYI-GRFK 85 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Grr~ 85 (575)
+.++|.++.+....++.++++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 3445677778889999999999999999999999999 999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCC
Q 008158 86 TITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 165 (575)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 165 (575)
++..+.++..++.++++++.. +.+.+++.|++.|++.+...++..++++|.+|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 141 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFEH-------------------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS 141 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSS-------------------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------------------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence 999999999999988887541 4567899999999999999999999999999987
Q ss_pred Ccccccchh---hhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhH
Q 008158 166 TDEGVKGIN---SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 242 (575)
Q Consensus 166 ~~~~~~~r~---~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (575)
+ |+ ..+++++.+.++|..++|.+++++.+..||++.|++.+++.++..+++++..++.+++++++++..+.
T Consensus 142 ~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (524)
T 2xut_A 142 N------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215 (524)
T ss_dssp T------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------
T ss_pred c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhH
Confidence 7 64 45566999999999999999999988889999999888777666666555444332222221111111
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhh----hhccCCCCCCCCCCCCccc-----
Q 008158 243 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAA----MIVDNNELKPDGTPVNQWR----- 313 (575)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----- 313 (575)
.+.+....++++.+. . ....+..............+.+......... ...+ .....+|+
T Consensus 216 ~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 283 (524)
T 2xut_A 216 LPVIRSALLTKVEGK-G----NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMG-------FVGAGASLQLERA 283 (524)
T ss_dssp -----------CTTH-H----HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHH-------HHHTGGGTHHHHS
T ss_pred HHHHHHHHhhhhccc-C----ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhc-------ccccchhhHHhhh
Confidence 111111111100000 0 0000000000000000000000000000000 0000 00000110
Q ss_pred --cchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchh
Q 008158 314 --LCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVL 391 (575)
Q Consensus 314 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~ 391 (575)
..+.+..+++++......++.....++..+.+..+.+..+....+... + .+.+.+...+.++.++..++.+++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (524)
T 2xut_A 284 RKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVL 359 (524)
T ss_dssp CCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-
T ss_pred hccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhh
Confidence 000011123344444444444444555555554443332222222110 0 1344555666777778888888775
Q ss_pred HHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhh
Q 008158 392 VPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFF 471 (575)
Q Consensus 392 ~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~ 471 (575)
.+..+|.++| .+..+.+.+|+++.+++++.+........ .....+.+++++.+++.+++++...+..++++
T Consensus 360 ~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 430 (524)
T 2xut_A 360 YPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD------GGSALSIFWQILPYALLTFGEVLVSATGLEFA 430 (524)
T ss_dssp --------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555655433 24556777888888887776654421100 00123556677788999999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008158 472 NKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 550 (575)
Q Consensus 472 ~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~ 550 (575)
.+.+|++.||+++|+.++...+|+.+++.+.+.+.+... .+|..+ ..+ .....|++.+++++++.++++++.+
T Consensus 431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998875320 123211 011 1123377777888887777776666
Q ss_pred hcccccc
Q 008158 551 RYRYKSG 557 (575)
Q Consensus 551 ~~~~~~~ 557 (575)
+++++++
T Consensus 505 ~~~~~~~ 511 (524)
T 2xut_A 505 SYQMQDH 511 (524)
T ss_dssp -------
T ss_pred Hhccchh
Confidence 6554443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.2e-27 Score=254.59 Aligned_cols=401 Identities=12% Similarity=-0.031 Sum_probs=248.5
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
|+....+....++..+..+. .....+++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++..+.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKN-FALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-HHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 34444555555666555444 444455666678 9999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHH----HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 96 LGMLTVTL----TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 96 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
++.+++++ +. +.+.++++|++.|++.+...+...+++.|.+|+++
T Consensus 104 ~~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----- 152 (451)
T 1pw4_A 104 AVMLFMGFVPWATS--------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----- 152 (451)
T ss_dssp HHHHHHHHCHHHHS--------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-----
T ss_pred HHHHHHHhhhhccc--------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-----
Confidence 99999988 65 45668999999999999999999999999999877
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHH
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAY 250 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (575)
|++++++.+.+.++|..++|.+++++.+..| ||+.|++.+++.++..++.++..++.++.....+ ..
T Consensus 153 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------- 220 (451)
T 1pw4_A 153 -RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP-IE---------- 220 (451)
T ss_dssp -HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-CT----------
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC-hh----------
Confidence 9999999999999999999999999888888 9999998887666555444333222111000000 00
Q ss_pred HhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhH
Q 008158 251 KKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKII 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (575)
+..+ +.+ .+..+. . .....++..........+.++...
T Consensus 221 -----~~~~---~~~-----~~~~~~------~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 258 (451)
T 1pw4_A 221 -----EYKN---DYP-----DDYNEK------A-----------------------EQELTAKQIFMQYVLPNKLLWYIA 258 (451)
T ss_dssp -----TTCC---C-----------------------------------------------CCTHHHHHHTSSCHHHHHHH
T ss_pred -----hhcc---ccc-----ccchhh------h-----------------------hcccccccchHHHHHcCHHHHHHH
Confidence 0000 000 000000 0 000000000000000001111111
Q ss_pred H-HHHHHHHHHHhhccccceeeeecccccccCCCcccc-CccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChH
Q 008158 331 P-IWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQI-PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLL 408 (575)
Q Consensus 331 ~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~ 408 (575)
. .+............. +.+.....+ ++. ..+.......++.++...+. ..+.||+.+ +++
T Consensus 259 ~~~~~~~~~~~~~~~~~-------~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~----g~l~~~~~~-----~~~ 320 (451)
T 1pw4_A 259 IANVFVYLLRYGILDWS-------PTYLKEVKH--FALDKSSWAYFLYEYAGIPGTLLC----GWMSDKVFR-----GNR 320 (451)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHBTTBSC--CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTST-----TCH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhc-----CCc
Confidence 1 111111111111111 111112121 111 11222333344444444433 333666511 122
Q ss_pred HHHHHHHHHHH-HHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHH
Q 008158 409 QRIGIGMIFSI-LSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 487 (575)
Q Consensus 409 ~~i~ig~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~ 487 (575)
+.+.++..+.. ++++.+... ...+.+......++.|++.+...+..+.++.+.+|++.||++.|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 321 GATGVFFMTLVTIATIVYWMN-------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh-------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 33444444443 444443322 1124555666667788888888888899999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 488 FCSFGF-ASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551 (575)
Q Consensus 488 ~~~~~l-g~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~ 551 (575)
++...+ |..+++.+.+.+.+.. ++...|.+.+++.+++.++.++..++
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 9999999999988743 34677888888888877666665433
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=3.8e-26 Score=246.28 Aligned_cols=413 Identities=11% Similarity=0.036 Sum_probs=226.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcch
Q 008158 52 QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSM 131 (575)
Q Consensus 52 ~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (575)
....+++.+++.++..++++++|+++||+ |||++++++.+++.+++++++++........... .. ...-..
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-------~~-~~~~a~ 124 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-------TV-PVYLAG 124 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-------SC-CGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-------HH-HHHHhh
Confidence 45678899999999999999999999995 9999999999999999999986432111000000 00 000122
Q ss_pred hhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc--------ccc
Q 008158 132 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD--------SVS 203 (575)
Q Consensus 132 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~--------~~g 203 (575)
+.+.++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|.++++.++..+.. ..+
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 67889999999999999999999999999999877 9999999999999999999877765533 235
Q ss_pred chhHhHHHHHHHHHHHHHHHhccc--eEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccC
Q 008158 204 WVIGFGIPTVLMIGAIILFLVGKK--LYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKL 281 (575)
Q Consensus 204 w~~~f~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (575)
||+.+.+..+..++.++..+...+ ++...+.+.+.. .+.+.....+....... .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a---~~~l~~~~~~~~~~~~~---------------~------ 254 (491)
T 4gc0_A 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQA---EGILRKIMGNTLATQAV---------------Q------ 254 (491)
T ss_dssp HHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHH---HHHHHHHHHHHHHHHHH---------------H------
T ss_pred hHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHH---HHhHHHhcCCchhHHHH---------------H------
Confidence 777776665554444443332211 111111111111 11111110000000000 0
Q ss_pred CCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeecccccccC
Q 008158 282 PLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL 361 (575)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 361 (575)
+.....+.... . . ........++...... ..++........... +........
T Consensus 255 ---~~~~~~~~~~~--~------------~----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~ 307 (491)
T 4gc0_A 255 ---EIKHSLDHGRK--T------------G----GRLLMFGVGVIVIGVM-----LSIFQQFVGINVVLY-YAPEVFKTL 307 (491)
T ss_dssp ---HHHHHHHHHHH--H------------T----THHHHSCCTHHHHHHH-----HHHHHHHTCHHHHHH-HHHHHHHHS
T ss_pred ---HHHHHHHhhhh--h------------h----hHHHHhcccHHHHHHH-----HHHHHHHhhhhHHHh-cchHHHHhc
Confidence 00000000000 0 0 0000000011110000 000000000000000 000000011
Q ss_pred CCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCC
Q 008158 362 GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPM 441 (575)
Q Consensus 362 ~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (575)
+ ...........+..+..++... +...+.||++|| +.+..+.....++++.++.....
T Consensus 308 ~-~~~~~~~~~~~~~~~~~~~~~~----~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~---------- 365 (491)
T 4gc0_A 308 G-ASTDIALLQTIIVGVINLTFTV----LAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT---------- 365 (491)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred C-CCccchhhHHHHHHHHHHHHHH----HHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc----------
Confidence 0 0000001111122222222222 233457787655 44566666666666665544321
Q ss_pred ccchhHHHHHHHHHHHHH-HHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccC
Q 008158 442 SQVSVFWLAPQLILMGFC-EAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN 520 (575)
Q Consensus 442 ~~~~~~~~i~~~~l~g~g-~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~ 520 (575)
..+.+..+...++...+ .....|..+.+..|.+|++.|++++|+.+..+++++.+++.+.|.+.+.. |...
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~ 437 (491)
T 4gc0_A 366 -QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVA 437 (491)
T ss_dssp -TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH
T ss_pred -ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh
Confidence 11222222222222222 22345667889999999999999999999999999999999988765421 1000
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 008158 521 DIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLED 563 (575)
Q Consensus 521 ~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~~~~~~~~~ 563 (575)
..+....|++++++++++.++.+++.+|+|+++.+|.++.
T Consensus 438 ---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 438 ---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 0022356888899999999999999999999988876655
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=6.9e-25 Score=232.56 Aligned_cols=176 Identities=11% Similarity=0.056 Sum_probs=145.5
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 008158 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~ 94 (575)
.++....+....++..+.. .....+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVAN-NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 3444444444444444443 4556666778899999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHH---HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 95 ILGMLTV---TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 95 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
.++.+++ +.+. +.+.++++|++.|+|.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----- 150 (438)
T 3o7q_A 102 ALGAALFWPAAEIM--------------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----- 150 (438)
T ss_dssp HHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-----
T ss_pred HHHHHHHHhccccc--------------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh-----
Confidence 9999988 4433 67889999999999999999999999999999988
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhcc-cccc-------------------------chhHhHHHHHHHHHHHHHHHh
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQ-DSVS-------------------------WVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~-~~~g-------------------------w~~~f~~~~~~~~i~~~~~~~ 224 (575)
|++.+++.+.+.++|..++|.+++++. +..+ ||+.|++.++..++..+++++
T Consensus 151 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 -GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 5544 999998766655544444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=1.4e-23 Score=218.29 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008158 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTV 101 (575)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~ 101 (575)
+....++..+........ .+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+..++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPA-IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHH
Confidence 344455555554434444 4456778999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 102 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
++++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 83 ~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 130 (375)
T 2gfp_A 83 VTTS--------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN 130 (375)
T ss_dssp HHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred HHhc--------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence 8876 67789999999999999999999999999999877 999999999
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHH
Q 008158 182 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 182 ~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~ 220 (575)
...++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888999999877765554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.86 E-value=1.4e-22 Score=214.48 Aligned_cols=386 Identities=10% Similarity=0.009 Sum_probs=214.4
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
|..+.+....++...++..+.++++.|+++++|+|..+.+++.+.+.++..++++++|+++||+ ||||+++.+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 3444444555556566666778899999999999999999999999999999999999999995 999999988887655
Q ss_pred HHHHH---HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 97 GMLTV---TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 97 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
+.... .++.. ....+..++.+.+++.+...+...+...+..++.. +++
T Consensus 86 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~ 136 (417)
T 2cfq_A 86 MFAPFFIFIFGPL-------------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRS 136 (417)
T ss_dssp CHHHHHHHTHHHH-------------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhc
Confidence 33211 12110 00012344455555444444443444444433211 235
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhh
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKR 253 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (575)
+..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+..+++ .+++.+.
T Consensus 137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------- 197 (417)
T 2cfq_A 137 NFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATV--------------- 197 (417)
T ss_dssp TCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCS---------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---ccccccc---------------
Confidence 666777777788999999999999876 689999987665543333322221111 0000000
Q ss_pred cccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHH
Q 008158 254 RLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIW 333 (575)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (575)
.+ +++ . +. ...+ ..+.. +..++ +..+......
T Consensus 198 ----~~---~~~------~-~~------~~~~---~~~~~------------------------~~~~~-~~~~~~~~~~ 229 (417)
T 2cfq_A 198 ----AN---AVG------A-NH------SAFS---LKLAL------------------------ELFRQ-PKLWFLSLYV 229 (417)
T ss_dssp ----SS---SSS------S-CC------CCCC---HHHHH------------------------HHTTC-HHHHHHHHHH
T ss_pred ----cc---ccc------c-cc------cccc---HHHHH------------------------HHhcC-CchhhHHHHH
Confidence 00 000 0 00 0000 00000 00001 1111111111
Q ss_pred HH-HHHHHHhhccccceeeeecccccccCCCccccCc---cccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHH
Q 008158 334 AA-GIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP---GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQ 409 (575)
Q Consensus 334 ~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~ 409 (575)
.. ...+.....+.+.+.. ...+ ...... +....++.+..++...+ ..++.||+++| +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~----~g~l~dr~g~~-------~ 290 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFT-------SFFA-TGEQGTRVFGYVTTMGELLNASIMFF----APLIINRIGGK-------N 290 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HTSS-SHHHHTHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHh-ccCCChhHHHHHHHHHHHHHHHHHHH----HHHHHHHhcHH-------H
Confidence 11 1111111111111110 0010 000001 11222333333333333 33347776443 4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHH-HH
Q 008158 410 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LF 488 (575)
Q Consensus 410 ~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~ 488 (575)
.+.++..+.+++++..... .+.+.+++..++.+++.....+..+.+..|.+|++.||++.++ ++
T Consensus 291 ~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 355 (417)
T 2cfq_A 291 ALLLAGTIMSVRIIGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTC---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5666666666665544322 2334444555556677666777778899999999999999999 47
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008158 489 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 549 (575)
Q Consensus 489 ~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~ 549 (575)
+.+.+|+.+++.+.+++.+.. ++...|.+.+++++++.+..++..
T Consensus 356 ~~~~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 356 FFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp TTHHHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHhHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhh
Confidence 888899999999999887642 456778888888777766655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=3.9e-12 Score=134.55 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=148.0
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc--cchHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI--GRFKTITFASIAA 94 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Grr~~~~~~~~l~ 94 (575)
|.++.+....++....++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 455666677777778888899999999998899999999999999999999999999999999 7 9999888777766
Q ss_pred H-HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 95 I-LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 95 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
. ++.++..+.. ..+.+.+.+..++.|++.+...+....+..|.+|+++ |
T Consensus 331 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 380 (451)
T 1pw4_A 331 VTIATIVYWMNP------------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A 380 (451)
T ss_dssp HHHHHHHTTSCC------------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred HHHHHHHHHHhc------------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h
Confidence 5 5554444321 1145566777788899888888888899999999877 9
Q ss_pred hhhhHHHHHHHHH-HHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 174 NSFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 174 ~~~~~~~~~~~~i-g~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
++++++++...++ |..++|.+.|++.+..||+..|++.+++.+++.++.++.
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999998999999998877777666655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.27 E-value=4.1e-11 Score=126.22 Aligned_cols=169 Identities=13% Similarity=0.060 Sum_probs=135.9
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHH-HhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVY-LLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
|..+......++.....+++..+++.| +++.+|++..+.+.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 455556666667777777888999999 8888899999999999999999999999999999995 99999999998888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++.++..+.. +.. ..+..++.|++.+...+...++..|.+|++ ++.
T Consensus 337 ~~~~~~~~~~--------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~ 382 (438)
T 3o7q_A 337 ALCLISAFAG--------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKY 382 (438)
T ss_dssp HHHHHHHHCC--------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHH
T ss_pred HHHHHHHHcC--------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccc
Confidence 8877776643 222 334447788999999999999989998842 566
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHH
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~ 221 (575)
+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 666655 567999999999999999888 999998776655544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.16 E-value=4.6e-11 Score=125.85 Aligned_cols=162 Identities=6% Similarity=0.059 Sum_probs=120.8
Q ss_pred HHhhhhHHHHHHHHhhhhCC---ChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 008158 31 LATIGLLANFMVYLLKEYHM---NQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWL 107 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~---~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~ 107 (575)
..++.....++.|+.+.++. +....+...++..++..++.++.|+++||+ |||+++..+..+..++.+..++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~-- 310 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 33344445678888776653 234456777777778888899999999995 999999888888777765554432
Q ss_pred CCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH-HHHHHHH
Q 008158 108 PQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW-YYTTFTV 186 (575)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~i 186 (575)
+.+.+++..++.+++.+...+....+..|.+|++. |++..++ ++....+
T Consensus 311 ------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 311 ------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQL 360 (417)
T ss_dssp ------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhH
Confidence 33445666666777766666667889999999866 8998888 4677789
Q ss_pred HHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 187 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 187 g~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
|..++|.++|++.+..|++..|.+.+++.+++.++.+..
T Consensus 361 g~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999888888888888777766666655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.14 E-value=2.1e-10 Score=122.93 Aligned_cols=185 Identities=9% Similarity=-0.006 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHH-----HHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTIT-----FASIA 93 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-----~~~~l 93 (575)
...+....++....++.....++.|+++.++.+..+.+.+.....++..++.++.|++.||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44444455556666677888899999998988878888889999999999999999999995 9986554 66666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
..++.++..+...... .....+.+.+.+..++.|++.+...+....+..|.+|++. |
T Consensus 364 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~ 420 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG-----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------N 420 (491)
T ss_dssp HHHHHTTTHHHHHHCC-----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------S
T ss_pred HHHHHHHHHHHHHhcC-----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------H
Confidence 6666666555431100 0001145567777888999999999999999999999988 9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccce
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 228 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~ 228 (575)
+.+.++++...++|..+++.+.+++.+ .++.+.|++.+++.+++.++.++..++
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876 467778877766666666555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=4.7e-09 Score=112.31 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=123.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
+.........++.....+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3333444444444444444455556677778888888888888888889999999999999995 999999999988888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+.+..+....... ......+.+.....+++ .+..+....+.+|.+|.+. |+.+
T Consensus 355 ~~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~ 407 (491)
T 4gc0_A 355 GMFSLGTAFYTQA--------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKA 407 (491)
T ss_dssp HHHHHHHHHHTTC--------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHH
T ss_pred HHHHHHHHHhccc--------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHH
Confidence 8777665432110 11112222222222333 3345667789999999988 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccc------cccchhHhHHHHHHHHHHHHHHHhccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQD------SVSWVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
.++.+....+|.++++.+.+.+.+ ..++...|++.+++.+++.+..++..|
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 999999999999999887766543 235556777766666666555544333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.68 E-value=4.2e-09 Score=108.58 Aligned_cols=161 Identities=9% Similarity=0.011 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH-HHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA-AIL 96 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l-~~~ 96 (575)
..+......++.....++...+++.|+++.+|.+..+.+.+.....++..++.++.|+++||+ ||+. ..+..+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~--~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM--WQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHHH--HHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 344555566667777777888888999988999999999999999999999999999999995 8732 223333 222
Q ss_pred HHH--HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 97 GML--TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 97 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
+.. ...... ..+.+.+++..++.|++.+...+...++..|.+| ++ |+
T Consensus 277 ~~~~~~~~~~~------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g 325 (375)
T 2gfp_A 277 GLLMWIPDWFG------------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AG 325 (375)
T ss_dssp SSSSSHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HH
T ss_pred HHHHHHHhhhc------------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cc
Confidence 222 122211 0144556677788899999999999999999987 55 99
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHH
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT 212 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~ 212 (575)
++.++.+...++|..++|.+.+++.+..+|+..+++.+
T Consensus 326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999999988777877776533
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.10 E-value=6.9e-06 Score=88.36 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=93.2
Q ss_pred cchhHhhHhhhhcccchhHHHhhhh-hcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHH
Q 008158 374 VISMITIGLWLPFYDTVLVPALRKI-TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ 452 (575)
Q Consensus 374 ~i~~~~~~i~~~~~~~~~~~~~~r~-~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 452 (575)
....++..+..++.++ +.||+ ++ ++.+.++.++..++.+..... ..+.+.+++.
T Consensus 61 ~~~~~~~~~~~~~~G~----l~dr~~g~-------r~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 115 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGW----IADRFFGK-------YNTILWLSLIYCVGHAFLAIF--------------EHSVQGFYTG 115 (524)
T ss_dssp HHHHHHHHHTHHHHHH----HHTTSSCS-------HHHHHHHHHHHHHHHHHHHHT--------------SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhcc-------hHHHHHHHHHHHHHHHHHHHh--------------cccHHHHHHH
Confidence 3344444444443333 36665 43 355777777777777766643 1156667777
Q ss_pred HHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHH
Q 008158 453 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL---LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 529 (575)
Q Consensus 453 ~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~---~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 529 (575)
.++.|++.+...+....++.|.+|++.|+.+.+. .+....+|..+++.+.+.+.+.. +| .+
T Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~----------~~ 179 (524)
T 2xut_A 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA----------AV 179 (524)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----------HH
T ss_pred HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----------HH
Confidence 8889999999999999999999999999877666 88888899999998888776532 33 56
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008158 530 FYFLIAGLGGLNIVYFLY 547 (575)
Q Consensus 530 ~f~~~a~i~~v~~i~~~~ 547 (575)
.|.+.+++.+++.+.+++
T Consensus 180 ~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 180 AFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776666555443
Done!