Query 008159
Match_columns 575
No_of_seqs 481 out of 3452
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 20:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02844 oxidoreductase/ferric 100.0 5.7E-99 1E-103 825.5 53.1 569 6-575 146-722 (722)
2 PLN02292 ferric-chelate reduct 100.0 9.5E-90 2.1E-94 750.8 52.2 529 7-574 161-701 (702)
3 PLN02631 ferric-chelate reduct 100.0 1.3E-88 2.9E-93 740.1 49.9 526 6-574 143-698 (699)
4 KOG0039 Ferric reductase, NADH 100.0 1.1E-68 2.4E-73 589.1 39.7 444 7-573 184-646 (646)
5 COG4097 Predicted ferric reduc 100.0 1.8E-41 3.9E-46 331.5 32.5 360 15-409 40-422 (438)
6 PRK10684 HCP oxidoreductase, N 100.0 1.6E-42 3.5E-47 358.2 17.8 296 173-495 11-312 (332)
7 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 1.6E-40 3.6E-45 346.5 19.1 298 173-495 3-329 (352)
8 COG1018 Hmp Flavodoxin reducta 100.0 3.7E-32 8E-37 268.8 21.5 253 172-456 6-266 (266)
9 PRK08345 cytochrome-c3 hydroge 100.0 1.7E-32 3.8E-37 277.5 18.5 243 173-481 7-266 (289)
10 cd06221 sulfite_reductase_like 100.0 2.7E-32 5.9E-37 271.2 18.1 235 176-477 1-240 (253)
11 PRK08221 anaerobic sulfite red 100.0 1.7E-31 3.7E-36 266.6 16.8 233 173-477 9-242 (263)
12 PRK06222 ferredoxin-NADP(+) re 100.0 1.1E-31 2.3E-36 270.7 14.4 253 174-521 2-257 (281)
13 cd06218 DHOD_e_trans FAD/NAD b 100.0 1.2E-31 2.7E-36 265.3 12.7 227 176-480 1-230 (246)
14 cd06192 DHOD_e_trans_like FAD/ 100.0 3.9E-31 8.4E-36 261.7 15.1 197 177-409 2-199 (243)
15 PRK00054 dihydroorotate dehydr 100.0 2.9E-31 6.2E-36 263.6 14.2 196 173-409 6-202 (250)
16 cd06189 flavin_oxioreductase N 100.0 2E-30 4.3E-35 253.6 19.9 208 175-409 2-211 (224)
17 cd06219 DHOD_e_trans_like1 FAD 100.0 3.7E-31 7.9E-36 262.4 13.8 224 175-478 2-228 (248)
18 cd06215 FNR_iron_sulfur_bindin 100.0 3.9E-30 8.4E-35 252.7 20.9 215 175-414 2-221 (231)
19 TIGR02911 sulfite_red_B sulfit 100.0 1.5E-30 3.2E-35 259.5 17.9 233 173-477 7-240 (261)
20 cd06210 MMO_FAD_NAD_binding Me 100.0 6.7E-30 1.4E-34 251.9 21.3 212 173-409 3-222 (236)
21 PRK08051 fre FMN reductase; Va 100.0 1E-29 2.2E-34 249.7 21.3 210 173-409 4-216 (232)
22 cd06216 FNR_iron_sulfur_bindin 100.0 1.5E-29 3.2E-34 250.5 20.7 222 161-409 2-231 (243)
23 cd06190 T4MO_e_transfer_like T 100.0 2E-29 4.2E-34 247.9 21.1 209 177-409 2-217 (232)
24 PRK11872 antC anthranilate dio 100.0 1.5E-29 3.2E-34 262.0 21.1 217 173-418 108-329 (340)
25 cd06217 FNR_iron_sulfur_bindin 100.0 2.4E-29 5.2E-34 247.8 21.2 217 173-414 3-225 (235)
26 cd06211 phenol_2-monooxygenase 100.0 2E-29 4.4E-34 248.7 20.5 214 173-414 8-228 (238)
27 cd06213 oxygenase_e_transfer_s 100.0 2.8E-29 6.1E-34 245.9 21.3 209 173-409 2-214 (227)
28 cd06220 DHOD_e_trans_like2 FAD 100.0 2.6E-30 5.7E-35 254.0 13.5 187 174-409 1-188 (233)
29 cd06188 NADH_quinone_reductase 100.0 1.3E-29 2.8E-34 256.4 18.9 216 173-414 11-273 (283)
30 cd06191 FNR_iron_sulfur_bindin 100.0 2.4E-29 5.1E-34 247.1 20.2 211 175-409 2-218 (231)
31 PRK05802 hypothetical protein; 100.0 5.5E-30 1.2E-34 261.4 14.3 201 173-409 66-275 (320)
32 PRK07609 CDP-6-deoxy-delta-3,4 100.0 3.9E-29 8.4E-34 259.6 20.5 217 172-417 103-325 (339)
33 cd06212 monooxygenase_like The 100.0 6.9E-29 1.5E-33 244.0 21.2 214 173-414 2-221 (232)
34 cd06195 FNR1 Ferredoxin-NADP+ 100.0 6.3E-29 1.4E-33 245.7 20.8 209 176-409 2-222 (241)
35 cd06187 O2ase_reductase_like T 100.0 8.8E-29 1.9E-33 241.9 20.7 209 176-409 1-211 (224)
36 cd06209 BenDO_FAD_NAD Benzoate 100.0 1.1E-28 2.4E-33 241.8 21.5 211 173-414 3-217 (228)
37 cd06184 flavohem_like_fad_nad_ 100.0 1E-28 2.2E-33 245.2 21.2 216 172-414 7-233 (247)
38 cd00322 FNR_like Ferredoxin re 100.0 7.1E-29 1.5E-33 242.2 19.7 208 178-409 2-212 (223)
39 cd06186 NOX_Duox_like_FAD_NADP 100.0 3.4E-28 7.4E-33 235.4 22.7 192 177-408 2-196 (210)
40 cd06196 FNR_like_1 Ferredoxin 100.0 1.6E-28 3.6E-33 239.0 20.3 202 173-409 2-207 (218)
41 cd06194 FNR_N-term_Iron_sulfur 100.0 1.6E-28 3.4E-33 239.8 19.9 207 176-414 1-211 (222)
42 cd06198 FNR_like_3 NAD(P) bind 100.0 3.3E-28 7.2E-33 236.5 20.7 195 184-409 7-202 (216)
43 cd06183 cyt_b5_reduct_like Cyt 100.0 5.4E-28 1.2E-32 237.9 21.2 213 175-409 2-223 (234)
44 cd06214 PA_degradation_oxidore 100.0 8.3E-28 1.8E-32 237.7 21.9 214 173-409 3-227 (241)
45 cd06197 FNR_like_2 FAD/NAD(P) 100.0 5.4E-28 1.2E-32 235.1 20.2 186 178-409 2-211 (220)
46 PRK10926 ferredoxin-NADP reduc 100.0 7.3E-28 1.6E-32 238.6 21.2 211 173-409 6-227 (248)
47 PLN03116 ferredoxin--NADP+ red 100.0 1.9E-27 4E-32 242.7 22.1 220 173-409 26-280 (307)
48 PRK13289 bifunctional nitric o 100.0 1.2E-27 2.6E-32 254.0 20.9 218 173-417 156-385 (399)
49 PTZ00274 cytochrome b5 reducta 100.0 2.3E-27 5E-32 241.9 21.5 215 173-404 54-279 (325)
50 cd06208 CYPOR_like_FNR These f 100.0 7.5E-27 1.6E-31 236.3 22.3 220 173-409 10-260 (286)
51 PRK05464 Na(+)-translocating N 99.9 4.8E-27 1E-31 249.2 19.3 217 173-415 135-398 (409)
52 PLN03115 ferredoxin--NADP(+) r 99.9 1.1E-26 2.4E-31 239.3 20.9 219 174-409 93-340 (367)
53 PRK05713 hypothetical protein; 99.9 9E-27 1.9E-31 238.7 19.6 202 173-414 93-298 (312)
54 PTZ00319 NADH-cytochrome B5 re 99.9 1.3E-26 2.9E-31 235.3 19.8 213 173-409 35-289 (300)
55 cd06200 SiR_like1 Cytochrome p 99.9 3.1E-26 6.7E-31 226.5 21.4 197 185-409 17-224 (245)
56 PRK12778 putative bifunctional 99.9 2.1E-27 4.6E-32 270.5 14.8 197 175-409 3-202 (752)
57 TIGR01941 nqrF NADH:ubiquinone 99.9 8.5E-27 1.8E-31 246.9 18.3 216 173-414 131-393 (405)
58 PRK12775 putative trifunctiona 99.9 2.9E-27 6.2E-32 273.8 15.0 253 175-521 3-257 (1006)
59 cd06182 CYPOR_like NADPH cytoc 99.9 3.9E-25 8.4E-30 221.0 20.4 207 183-409 14-236 (267)
60 TIGR03224 benzo_boxA benzoyl-C 99.9 5.4E-25 1.2E-29 232.3 21.1 212 173-409 144-384 (411)
61 cd06185 PDR_like Phthalate dio 99.9 6.9E-25 1.5E-29 212.4 19.3 190 178-409 2-197 (211)
62 PRK12779 putative bifunctional 99.9 5.9E-26 1.3E-30 260.7 13.5 266 173-521 650-927 (944)
63 cd06201 SiR_like2 Cytochrome p 99.9 2.2E-24 4.8E-29 218.2 21.8 206 172-409 46-266 (289)
64 COG0543 UbiB 2-polyprenylpheno 99.9 6.6E-24 1.4E-28 210.1 20.5 201 174-409 10-213 (252)
65 PLN02252 nitrate reductase [NA 99.9 2.8E-24 6.1E-29 243.6 20.1 215 173-409 636-877 (888)
66 KOG0534 NADH-cytochrome b-5 re 99.9 2E-23 4.2E-28 204.9 20.6 208 173-402 53-267 (286)
67 cd06193 siderophore_interactin 99.9 2E-22 4.3E-27 198.3 18.0 194 176-409 1-219 (235)
68 PTZ00306 NADH-dependent fumara 99.9 2.6E-22 5.6E-27 237.1 20.7 220 173-414 916-1153(1167)
69 PF08030 NAD_binding_6: Ferric 99.8 1.3E-20 2.9E-25 173.3 12.6 79 283-363 1-79 (156)
70 cd06199 SiR Cytochrome p450- l 99.8 1.5E-20 3.3E-25 195.9 14.2 188 196-409 129-329 (360)
71 TIGR01931 cysJ sulfite reducta 99.8 5.7E-20 1.2E-24 202.8 13.5 187 197-409 367-566 (597)
72 cd06206 bifunctional_CYPOR The 99.8 4.9E-19 1.1E-23 186.5 15.8 187 199-409 147-349 (384)
73 cd06207 CyPoR_like NADPH cytoc 99.8 7.9E-19 1.7E-23 184.7 16.0 177 214-409 161-351 (382)
74 PRK06214 sulfite reductase; Pr 99.8 1.5E-18 3.2E-23 186.7 15.1 174 213-409 312-499 (530)
75 PRK10953 cysJ sulfite reductas 99.8 4E-18 8.7E-23 187.2 14.8 188 197-409 370-569 (600)
76 cd06203 methionine_synthase_re 99.8 1.3E-17 2.8E-22 176.1 17.0 184 213-409 170-367 (398)
77 PF01794 Ferric_reduct: Ferric 99.8 1.1E-17 2.4E-22 147.8 12.9 121 19-139 1-123 (125)
78 cd06204 CYPOR NADPH cytochrome 99.7 1.9E-17 4.1E-22 175.8 16.5 189 214-409 175-385 (416)
79 PF08022 FAD_binding_8: FAD-bi 99.7 8.5E-20 1.8E-24 155.7 -1.7 98 174-276 4-104 (105)
80 COG2871 NqrF Na+-transporting 99.7 4.9E-17 1.1E-21 154.5 12.4 198 188-409 153-395 (410)
81 cd06202 Nitric_oxide_synthase 99.7 1.6E-16 3.5E-21 168.1 17.1 178 215-409 175-371 (406)
82 PRK06567 putative bifunctional 99.7 6.8E-16 1.5E-20 173.2 15.2 120 173-308 792-915 (1028)
83 PF00175 NAD_binding_1: Oxidor 99.6 1.2E-14 2.6E-19 125.0 10.0 105 288-404 1-108 (109)
84 COG0369 CysJ Sulfite reductase 99.5 6.5E-13 1.4E-17 144.1 17.1 173 215-409 371-556 (587)
85 KOG3378 Globins and related he 99.5 2.3E-13 5E-18 128.7 10.8 123 174-308 152-287 (385)
86 PF00970 FAD_binding_6: Oxidor 99.4 1.2E-13 2.7E-18 116.7 6.4 92 174-277 2-98 (99)
87 KOG1158 NADP/FAD dependent oxi 99.3 4.5E-11 9.9E-16 129.7 14.3 178 214-409 419-614 (645)
88 PRK05419 putative sulfite oxid 98.8 5.3E-07 1.2E-11 85.9 17.6 125 11-144 39-164 (205)
89 KOG1159 NADP-dependent flavopr 98.7 7.2E-08 1.6E-12 99.2 11.3 165 216-409 367-544 (574)
90 PRK10713 2Fe-2S ferredoxin Yfa 98.6 1E-09 2.2E-14 89.3 -4.7 53 434-486 4-57 (84)
91 CHL00134 petF ferredoxin; Vali 98.5 4.1E-09 8.8E-14 88.6 -3.9 57 437-493 13-69 (99)
92 TIGR02008 fdx_plant ferredoxin 98.4 8.7E-09 1.9E-13 86.3 -3.7 52 437-488 11-62 (97)
93 PLN03136 Ferredoxin; Provision 98.4 1.3E-08 2.8E-13 91.0 -3.2 58 437-494 62-119 (148)
94 PTZ00038 ferredoxin; Provision 98.4 2.2E-08 4.7E-13 92.8 -3.4 63 432-494 98-160 (191)
95 COG2717 Predicted membrane pro 98.2 9.9E-05 2.2E-09 69.3 16.4 118 49-168 71-194 (209)
96 cd00207 fer2 2Fe-2S iron-sulfu 98.0 6.1E-07 1.3E-11 73.0 -2.7 56 433-488 2-57 (84)
97 PF00111 Fer2: 2Fe-2S iron-sul 97.9 2.3E-07 5E-12 74.5 -6.4 49 435-483 2-52 (78)
98 PRK07609 CDP-6-deoxy-delta-3,4 97.8 9.1E-07 2E-11 92.0 -4.3 54 433-486 4-57 (339)
99 COG0633 Fdx Ferredoxin [Energy 97.8 1.5E-06 3.1E-11 73.4 -2.7 44 443-486 17-62 (102)
100 COG2375 ViuB Siderophore-inter 97.7 0.0029 6.3E-08 62.1 17.6 139 172-332 18-183 (265)
101 PRK11872 antC anthranilate dio 97.7 2.4E-06 5.2E-11 88.8 -4.0 50 437-486 11-60 (340)
102 PRK05713 hypothetical protein; 97.7 2.6E-06 5.6E-11 87.5 -4.1 53 439-491 7-59 (312)
103 TIGR02007 fdx_isc ferredoxin, 97.5 7.2E-06 1.6E-10 70.3 -3.6 48 438-485 13-61 (110)
104 PRK05464 Na(+)-translocating N 97.3 2.1E-05 4.5E-10 83.9 -3.5 58 430-487 34-93 (409)
105 TIGR01941 nqrF NADH:ubiquinone 97.0 5.7E-05 1.2E-09 80.5 -3.8 57 431-487 31-89 (405)
106 PF08021 FAD_binding_9: Sidero 96.9 0.0028 6.2E-08 54.9 6.5 90 175-276 1-117 (117)
107 PLN02593 adrenodoxin-like ferr 96.7 8.9E-05 1.9E-09 64.2 -3.8 46 436-481 8-54 (117)
108 COG2871 NqrF Na+-transporting 95.7 0.0016 3.5E-08 63.3 -1.6 57 431-487 36-94 (410)
109 cd06186 NOX_Duox_like_FAD_NADP 94.5 0.026 5.7E-07 54.1 2.8 32 532-573 179-210 (210)
110 PTZ00490 Ferredoxin superfamil 93.7 0.004 8.7E-08 55.5 -4.1 49 438-486 45-95 (143)
111 PRK11433 aldehyde oxidoreducta 93.0 0.009 1.9E-07 56.8 -3.3 53 430-483 50-104 (217)
112 PRK07569 bidirectional hydroge 92.8 0.0098 2.1E-07 58.3 -3.6 45 432-478 4-54 (234)
113 PF13510 Fer2_4: 2Fe-2S iron-s 92.1 0.0058 1.3E-07 49.3 -5.1 47 431-479 3-59 (82)
114 PF13085 Fer2_3: 2Fe-2S iron-s 91.6 0.0095 2.1E-07 50.7 -4.6 37 442-478 22-64 (110)
115 PRK09908 xanthine dehydrogenas 91.4 0.025 5.4E-07 51.2 -2.3 49 430-478 7-56 (159)
116 cd06197 FNR_like_2 FAD/NAD(P) 91.2 0.15 3.3E-06 49.4 2.8 29 531-574 192-220 (220)
117 PRK08166 NADH dehydrogenase su 90.0 0.033 7.2E-07 65.2 -3.6 49 433-483 3-57 (847)
118 cd06212 monooxygenase_like The 89.8 0.39 8.4E-06 46.8 4.3 22 530-551 198-219 (232)
119 cd06195 FNR1 Ferredoxin-NADP+ 89.5 0.28 6.2E-06 48.1 3.1 25 528-552 200-224 (241)
120 KOG0039 Ferric reductase, NADH 88.5 0.45 9.7E-06 53.7 4.1 56 22-77 181-242 (646)
121 cd06185 PDR_like Phthalate dio 88.3 0.41 8.8E-06 45.8 3.2 37 510-551 162-198 (211)
122 TIGR03193 4hydroxCoAred 4-hydr 86.9 0.087 1.9E-06 47.2 -2.2 46 433-478 3-50 (148)
123 PRK08051 fre FMN reductase; Va 86.8 0.43 9.4E-06 46.6 2.4 20 531-550 196-216 (232)
124 PRK12386 fumarate reductase ir 86.7 0.072 1.6E-06 52.5 -3.1 37 442-478 23-65 (251)
125 COG4097 Predicted ferric reduc 86.6 0.3 6.6E-06 49.9 1.2 22 531-552 403-424 (438)
126 COG0479 FrdB Succinate dehydro 85.9 0.18 3.8E-06 48.9 -0.9 36 443-478 24-65 (234)
127 PRK13552 frdB fumarate reducta 85.8 0.1 2.2E-06 51.3 -2.6 37 442-478 27-69 (239)
128 PRK08640 sdhB succinate dehydr 85.8 0.1 2.2E-06 51.5 -2.6 37 442-478 26-75 (249)
129 PRK12385 fumarate reductase ir 85.6 0.15 3.2E-06 50.2 -1.5 38 442-479 28-71 (244)
130 TIGR00384 dhsB succinate dehyd 85.5 0.1 2.2E-06 50.7 -2.8 41 441-482 17-63 (220)
131 PF00175 NAD_binding_1: Oxidor 85.4 0.8 1.7E-05 38.5 3.1 21 526-546 89-109 (109)
132 PRK07570 succinate dehydrogena 85.2 0.13 2.8E-06 50.8 -2.2 35 445-479 27-71 (250)
133 cd06184 flavohem_like_fad_nad_ 83.8 1.1 2.3E-05 44.1 3.7 39 509-551 193-231 (247)
134 cd06215 FNR_iron_sulfur_bindin 83.7 0.71 1.5E-05 44.8 2.3 39 510-551 181-219 (231)
135 TIGR03198 pucE xanthine dehydr 83.4 0.18 3.8E-06 45.6 -1.9 48 431-478 3-52 (151)
136 cd06188 NADH_quinone_reductase 82.9 1.4 3E-05 44.4 4.1 24 528-551 248-271 (283)
137 cd06209 BenDO_FAD_NAD Benzoate 82.5 0.88 1.9E-05 44.2 2.4 22 529-550 193-214 (228)
138 cd06198 FNR_like_3 NAD(P) bind 82.3 0.87 1.9E-05 43.8 2.2 24 528-551 180-203 (216)
139 cd06189 flavin_oxioreductase N 82.0 0.88 1.9E-05 44.0 2.2 23 529-551 190-212 (224)
140 cd06210 MMO_FAD_NAD_binding Me 81.9 1.8 4E-05 42.1 4.4 21 530-550 202-222 (236)
141 PF00033 Cytochrom_B_N: Cytoch 81.8 37 0.00079 31.3 13.2 30 46-75 41-70 (188)
142 COG3894 Uncharacterized metal- 81.4 0.23 4.9E-06 52.5 -2.3 51 440-491 10-61 (614)
143 cd06217 FNR_iron_sulfur_bindin 81.4 1 2.2E-05 43.8 2.4 23 529-551 201-223 (235)
144 cd06213 oxygenase_e_transfer_s 79.9 2.1 4.5E-05 41.5 4.0 23 529-551 193-215 (227)
145 cd06191 FNR_iron_sulfur_bindin 78.9 1.3 2.9E-05 43.0 2.3 22 530-551 198-219 (231)
146 cd06218 DHOD_e_trans FAD/NAD b 78.8 3 6.4E-05 41.1 4.8 38 511-550 164-201 (246)
147 PRK06259 succinate dehydrogena 78.6 0.18 3.9E-06 55.2 -4.4 39 443-482 25-69 (486)
148 PRK05950 sdhB succinate dehydr 77.9 0.24 5.3E-06 48.4 -3.2 38 441-478 20-64 (232)
149 cd06187 O2ase_reductase_like T 77.5 3 6.6E-05 40.1 4.3 39 511-551 174-212 (224)
150 PRK10684 HCP oxidoreductase, N 77.0 1.6 3.5E-05 45.2 2.3 21 531-551 205-225 (332)
151 COG2080 CoxS Aerobic-type carb 76.8 0.49 1.1E-05 42.6 -1.3 47 431-477 3-51 (156)
152 cd06216 FNR_iron_sulfur_bindin 76.8 2.1 4.5E-05 42.0 3.0 22 529-550 210-231 (243)
153 PRK12577 succinate dehydrogena 76.7 0.26 5.6E-06 50.9 -3.6 38 441-478 21-64 (329)
154 cd06220 DHOD_e_trans_like2 FAD 76.4 3.3 7.2E-05 40.3 4.3 47 513-573 154-200 (233)
155 PRK12576 succinate dehydrogena 75.0 0.33 7.2E-06 48.8 -3.2 41 441-482 27-73 (279)
156 PLN00129 succinate dehydrogena 74.9 0.39 8.4E-06 48.0 -2.7 31 448-478 72-108 (276)
157 cd06211 phenol_2-monooxygenase 74.6 1.9 4.2E-05 42.1 2.1 23 529-551 204-226 (238)
158 cd06194 FNR_N-term_Iron_sulfur 72.1 2.9 6.2E-05 40.3 2.6 22 529-550 187-208 (222)
159 TIGR02160 PA_CoA_Oxy5 phenylac 71.7 4.9 0.00011 41.9 4.4 21 530-550 208-228 (352)
160 PRK12575 succinate dehydrogena 71.6 0.58 1.3E-05 45.8 -2.4 31 448-478 33-68 (235)
161 cd06196 FNR_like_1 Ferredoxin 70.1 2.6 5.7E-05 40.4 1.8 22 530-551 187-208 (218)
162 PF01292 Ni_hydr_CYTB: Prokary 67.0 61 0.0013 29.8 10.4 23 51-73 42-64 (182)
163 cd06190 T4MO_e_transfer_like T 66.8 4.3 9.3E-05 39.4 2.6 22 529-550 196-217 (232)
164 PRK12814 putative NADPH-depend 65.3 0.71 1.5E-05 52.5 -3.7 46 432-479 4-55 (652)
165 cd06214 PA_degradation_oxidore 64.8 8.7 0.00019 37.4 4.4 23 528-550 205-227 (241)
166 PRK06222 ferredoxin-NADP(+) re 64.5 7.9 0.00017 39.0 4.1 21 531-551 183-203 (281)
167 PRK10926 ferredoxin-NADP reduc 64.4 4.3 9.3E-05 40.0 2.1 22 529-550 206-227 (248)
168 PRK13289 bifunctional nitric o 64.3 4.4 9.5E-05 43.0 2.3 23 529-551 358-380 (399)
169 TIGR02963 xanthine_xdhA xanthi 63.9 1.3 2.9E-05 48.0 -1.8 46 433-478 2-50 (467)
170 TIGR01973 NuoG NADH-quinone ox 63.7 0.83 1.8E-05 51.4 -3.5 40 440-479 5-50 (603)
171 KOG0534 NADH-cytochrome b-5 re 63.1 6.7 0.00015 39.4 3.1 40 510-550 235-274 (286)
172 PRK09130 NADH dehydrogenase su 60.4 0.95 2.1E-05 51.6 -3.9 46 433-480 3-54 (687)
173 cd00322 FNR_like Ferredoxin re 60.3 5.7 0.00012 38.0 2.1 23 528-550 190-212 (223)
174 PF10418 DHODB_Fe-S_bind: Iron 57.8 0.45 9.8E-06 32.5 -4.3 19 463-481 3-21 (40)
175 PF14358 DUF4405: Domain of un 57.5 15 0.00033 27.7 3.6 30 43-72 33-62 (64)
176 cd06208 CYPOR_like_FNR These f 57.1 12 0.00025 37.8 3.8 21 530-550 240-260 (286)
177 cd06201 SiR_like2 Cytochrome p 56.3 7.2 0.00016 39.5 2.1 21 530-550 246-266 (289)
178 cd06182 CYPOR_like NADPH cytoc 55.2 7.8 0.00017 38.7 2.1 21 531-551 216-237 (267)
179 cd06193 siderophore_interactin 54.9 7.8 0.00017 37.8 2.0 22 529-550 198-219 (235)
180 PLN03116 ferredoxin--NADP+ red 54.7 7.9 0.00017 39.6 2.1 21 530-550 260-280 (307)
181 cd06219 DHOD_e_trans_like1 FAD 52.0 18 0.00038 35.6 4.1 19 532-550 183-201 (248)
182 PRK09800 putative hypoxanthine 51.8 2.6 5.7E-05 49.8 -2.1 47 432-478 3-51 (956)
183 KOG3309 Ferredoxin [Energy pro 51.5 3.9 8.5E-05 36.5 -0.6 44 437-480 52-96 (159)
184 TIGR03313 Se_sel_red_Mo probab 51.0 2.6 5.6E-05 49.9 -2.4 44 435-478 2-47 (951)
185 cd06200 SiR_like1 Cytochrome p 50.8 10 0.00022 37.3 2.1 20 531-550 204-224 (245)
186 PRK07860 NADH dehydrogenase su 50.3 1.9 4.1E-05 50.2 -3.6 45 432-478 5-55 (797)
187 PRK08345 cytochrome-c3 hydroge 50.3 10 0.00022 38.3 2.1 22 529-550 212-233 (289)
188 PF00667 FAD_binding_1: FAD bi 49.8 11 0.00024 36.3 2.2 26 214-239 176-201 (219)
189 cd06183 cyt_b5_reduct_like Cyt 49.4 11 0.00023 36.5 2.0 24 528-551 200-224 (234)
190 cd06192 DHOD_e_trans_like FAD/ 49.2 11 0.00024 36.9 2.1 22 530-551 179-200 (243)
191 cd06221 sulfite_reductase_like 48.9 11 0.00024 37.2 2.1 24 529-552 190-213 (253)
192 PF13706 PepSY_TM_3: PepSY-ass 48.4 25 0.00055 23.4 3.1 20 50-69 3-22 (37)
193 COG1018 Hmp Flavodoxin reducta 45.9 17 0.00037 36.3 2.8 40 508-551 179-218 (266)
194 cd06206 bifunctional_CYPOR The 45.6 14 0.0003 39.1 2.2 36 176-211 2-42 (384)
195 COG1294 AppB Cytochrome bd-typ 44.2 3.9E+02 0.0085 27.8 12.9 31 47-77 159-190 (346)
196 KOG3049 Succinate dehydrogenas 43.9 4.8 0.0001 37.9 -1.3 16 464-479 98-113 (288)
197 TIGR03311 Se_dep_Molyb_1 selen 43.4 4.4 9.6E-05 47.4 -2.0 43 434-478 3-47 (848)
198 cd08766 Cyt_b561_ACYB-1_like P 43.2 2.5E+02 0.0054 25.2 10.0 27 47-73 70-96 (144)
199 PRK08493 NADH dehydrogenase su 42.3 3.2 7E-05 48.0 -3.3 44 433-478 3-52 (819)
200 PRK00054 dihydroorotate dehydr 42.0 25 0.00054 34.6 3.3 20 531-550 183-202 (250)
201 PF13172 PepSY_TM_1: PepSY-ass 40.8 40 0.00086 21.9 3.1 23 49-71 3-25 (34)
202 cd08554 Cyt_b561 Eukaryotic cy 40.6 74 0.0016 27.7 5.8 27 47-73 65-91 (131)
203 PRK09129 NADH dehydrogenase su 40.0 3 6.4E-05 48.6 -4.2 45 433-479 3-53 (776)
204 PF03929 PepSY_TM: PepSY-assoc 40.0 49 0.0011 20.5 3.1 19 52-70 2-20 (27)
205 PLN03115 ferredoxin--NADP(+) r 40.0 34 0.00074 35.9 4.1 22 529-550 319-340 (367)
206 PTZ00274 cytochrome b5 reducta 39.5 19 0.00041 37.1 2.1 17 531-547 265-281 (325)
207 PRK05802 hypothetical protein; 38.8 19 0.00042 37.0 2.0 19 532-550 257-275 (320)
208 TIGR02911 sulfite_red_B sulfit 38.6 20 0.00044 35.6 2.1 23 529-551 190-212 (261)
209 COG0543 UbiB 2-polyprenylpheno 38.5 20 0.00044 35.4 2.1 25 528-552 191-215 (252)
210 PLN00192 aldehyde oxidase 38.0 6.9 0.00015 48.2 -1.6 48 431-478 5-55 (1344)
211 cd06207 CyPoR_like NADPH cytoc 36.9 21 0.00044 37.8 1.9 27 185-211 16-43 (382)
212 COG1034 NuoG NADH dehydrogenas 36.8 11 0.00024 42.7 -0.2 46 433-480 3-54 (693)
213 TIGR01583 formate-DH-gamm form 36.4 2.5E+02 0.0055 26.5 9.2 25 47-71 44-68 (204)
214 PF01794 Ferric_reduct: Ferric 34.9 86 0.0019 26.5 5.3 45 100-144 2-52 (125)
215 TIGR03224 benzo_boxA benzoyl-C 33.9 41 0.00088 35.9 3.6 21 530-550 364-388 (411)
216 PRK12446 undecaprenyldiphospho 33.1 51 0.0011 34.3 4.2 25 284-308 2-28 (352)
217 PLN02680 carbon-monoxide oxyge 32.8 3.8E+02 0.0083 26.1 9.6 28 47-74 109-136 (232)
218 TIGR02969 mam_aldehyde_ox alde 31.9 9.5 0.0002 47.0 -1.8 48 432-479 3-53 (1330)
219 cd06199 SiR Cytochrome p450- l 31.8 28 0.0006 36.5 1.9 28 185-212 16-44 (360)
220 cd06204 CYPOR NADPH cytochrome 31.7 29 0.00063 37.1 2.1 38 174-211 8-50 (416)
221 cd08763 Cyt_b561_CYB561 Verteb 31.6 3.7E+02 0.008 24.0 8.8 19 50-68 39-57 (143)
222 PF14358 DUF4405: Domain of un 31.2 1.3E+02 0.0028 22.5 5.1 45 101-145 14-61 (64)
223 PRK08221 anaerobic sulfite red 30.4 31 0.00066 34.3 1.9 22 529-550 192-213 (263)
224 PF06223 Phage_tail_T: Minor t 30.1 24 0.00053 29.4 0.9 14 507-521 5-18 (103)
225 PRK11281 hypothetical protein; 29.6 6E+02 0.013 31.0 12.5 31 41-71 606-636 (1113)
226 PF10067 DUF2306: Predicted me 29.5 1.9E+02 0.004 24.2 6.2 23 50-72 4-26 (103)
227 cd06202 Nitric_oxide_synthase 29.4 35 0.00077 36.3 2.2 28 185-212 16-45 (406)
228 PRK12779 putative bifunctional 27.3 37 0.0008 40.5 2.1 22 531-552 849-870 (944)
229 TIGR01715 phage_lam_T phage ta 26.8 33 0.00072 28.3 1.1 12 510-521 2-13 (100)
230 cd08765 Cyt_b561_CYBRD1 Verteb 26.7 4.8E+02 0.011 23.6 10.1 28 47-74 77-104 (153)
231 PTZ00305 NADH:ubiquinone oxido 26.6 18 0.00039 36.3 -0.5 46 431-478 68-120 (297)
232 TIGR02125 CytB-hydogenase Ni/F 26.0 4.9E+02 0.011 24.4 9.4 24 49-72 46-69 (211)
233 TIGR00918 2A060602 The Eukaryo 26.0 1.3E+03 0.028 28.4 15.2 67 43-111 1012-1079(1145)
234 PTZ00319 NADH-cytochrome B5 re 25.9 40 0.00088 34.2 1.9 22 529-550 267-289 (300)
235 TIGR01282 nifD nitrogenase mol 24.7 68 0.0015 34.9 3.4 67 501-573 106-174 (466)
236 cd01976 Nitrogenase_MoFe_alpha 24.6 62 0.0013 34.7 3.1 67 501-573 73-141 (421)
237 PRK12778 putative bifunctional 24.6 44 0.00096 38.8 2.1 20 532-551 184-203 (752)
238 PLN02351 cytochromes b561 fami 23.3 2.9E+02 0.0063 27.1 7.0 25 48-72 113-137 (242)
239 TIGR01931 cysJ sulfite reducta 22.6 50 0.0011 37.2 1.9 38 174-211 237-280 (597)
240 PTZ00306 NADH-dependent fumara 22.3 52 0.0011 40.3 2.1 23 528-550 1128-1150(1167)
241 cd08762 Cyt_b561_CYBASC3 Verte 21.8 6.6E+02 0.014 23.4 9.9 26 47-72 100-125 (179)
242 PRK10639 formate dehydrogenase 21.8 6.9E+02 0.015 23.7 10.0 25 48-72 50-74 (211)
243 PF09842 DUF2069: Predicted me 21.8 3.1E+02 0.0068 23.2 6.2 57 49-122 50-106 (109)
244 MTH00156 CYTB cytochrome b; Pr 21.8 6.4E+02 0.014 26.4 9.7 20 53-72 71-90 (356)
245 PRK12775 putative trifunctiona 21.7 98 0.0021 37.3 4.2 21 532-552 184-204 (1006)
246 cd06203 methionine_synthase_re 21.4 61 0.0013 34.4 2.2 28 184-211 15-43 (398)
247 PF01339 CheB_methylest: CheB 21.4 84 0.0018 29.4 2.9 29 509-537 97-125 (182)
248 cd08764 Cyt_b561_CG1275_like N 20.9 7.5E+02 0.016 23.8 9.4 23 49-71 91-113 (214)
249 cd00547 QFR_TypeD_subunitD Qui 20.7 5.4E+02 0.012 22.0 8.2 48 20-68 18-68 (115)
250 TIGR00917 2A060601 Niemann-Pic 20.3 1.5E+03 0.031 28.2 13.7 32 42-73 1095-1126(1204)
No 1
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=5.7e-99 Score=825.47 Aligned_cols=569 Identities=74% Similarity=1.240 Sum_probs=485.4
Q ss_pred ehhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHhCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhH
Q 008159 6 CRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQD 85 (575)
Q Consensus 6 ~~~~~~~~~~~~r~G~~a~~~~~ll~l~~~R~~~~~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~~ 85 (575)
..||.+|..+++|+|++|++|||++++|++||+++.+++|+|||+++.||||+|+++++++++|+++|++.|...+...+
T Consensus 146 ~~~~~~~~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~ 225 (722)
T PLN02844 146 NLWQLKYLRVATRFGLLAEACLALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQD 225 (722)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999888877766666
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHcchHHhhhhhHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHH
Q 008159 86 EMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLL 165 (575)
Q Consensus 86 ~~~~~~~~~~~~~~G~i~~~~~~~~~~~S~~~iRr~~ye~F~~~H~l~~~~~~~~~~H~~~~~~~~~~~~~~l~~~dr~~ 165 (575)
+++.|..++..+++|+++++++++|+++|++++||+.||+|+++|++++++++++++|.+..++||++|++++|++||++
T Consensus 226 ~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRll 305 (722)
T PLN02844 226 EIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLL 305 (722)
T ss_pred hhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHh
Confidence 77888777777899999999999999999999999999999999999998999999999887778899999999999999
Q ss_pred hhhhccCceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccH
Q 008159 166 RFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTS 245 (575)
Q Consensus 166 R~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~ 245 (575)
|++++++..++++++.++++++++++++++.++|+||||++|++|..++++||||||+|+|..+++.+++.||..|+||+
T Consensus 306 R~~~s~~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~ 385 (722)
T PLN02844 306 RIVQSRPETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTN 385 (722)
T ss_pred heEEEeeeEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchH
Confidence 99998877788899999999999999998889999999999999999999999999999875467789999999999999
Q ss_pred HHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 008159 246 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 325 (575)
Q Consensus 246 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~ 325 (575)
+|++.++...+.+.+.....++.|+||||.+..+..+++++++||||+||||++|+++++.+++. .+...+++++|+|+
T Consensus 386 ~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~-~~~~~~~~V~LIw~ 464 (722)
T PLN02844 386 SLYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSS-SRYRFPKRVQLIYV 464 (722)
T ss_pred HHHHHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccc-cccCCCCcEEEEEE
Confidence 99998764332211111125799999999987666678999999999999999999999987532 12233578999999
Q ss_pred eCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCC-CceeEEecCCchHHHHHHH
Q 008159 326 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGT-QSNYAVNGLESLIWMAALV 404 (575)
Q Consensus 326 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~vcGp~~~~~~~~v~ 404 (575)
+|+.+|+.+.+++.+.+.+...+..++++++|+|||+.+....++.+++....+.++.++ .+.+.+|||+++.||+++.
T Consensus 465 vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~ 544 (722)
T PLN02844 465 VKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMV 544 (722)
T ss_pred ECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHH
Confidence 999999999999876544322233578999999999875544555555544444455554 4779999999999999999
Q ss_pred HHHHHHHHHHHHHhheEEecCCCcC-ccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCC
Q 008159 405 GITSILFVIFLISLNHIFVPVEKKL-PSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQT 483 (575)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v 483 (575)
..+..+|+.+.+..++||+|.+++. ..++...++..+..+.+.+.|+.+.+..+++.+.++|++-+.....++..+++.
T Consensus 545 ~~s~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (722)
T PLN02844 545 ALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEI 624 (722)
T ss_pred HHHHHHHHHHHHHHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCC
Confidence 9999999999999999999988776 557777888888887788899999999999999999965555555677777766
Q ss_pred CCCCcCCCcccc-----cCCCcceeeeeeecCCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhhhhhhhcc
Q 008159 484 PPVSLNQGKAVQ-----VLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMN 558 (575)
Q Consensus 484 ~~~~~~~~~~~e-----~~~~~v~~~~v~fg~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~~~~~~~~ 558 (575)
+..+++..-+.+ ...+.++++++|||+|||++|||+++++++.|++|||+|||||+||++||++||++|+|+|++
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~ 704 (722)
T PLN02844 625 PRVSQKQGIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVG 704 (722)
T ss_pred ccccccccCCCCCccccccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccc
Confidence 654433332211 344566889999999999999999999999999999999999999999999999999999886
Q ss_pred C-CCCCCceeeecccccC
Q 008159 559 A-NKDKPYFNFHSLNFTF 575 (575)
Q Consensus 559 ~-~~~~~~f~fhs~~f~~ 575 (575)
+ .+.++.|||||+||||
T Consensus 705 ~~~~~~~~~~~hs~~f~l 722 (722)
T PLN02844 705 DDGKRKMYFSFHSLNFTL 722 (722)
T ss_pred cccccCCceeeeecccCC
Confidence 4 4447999999999997
No 2
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=9.5e-90 Score=750.80 Aligned_cols=529 Identities=36% Similarity=0.695 Sum_probs=430.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHhCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhHH
Q 008159 7 RWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDE 86 (575)
Q Consensus 7 ~~~~~~~~~~~r~G~~a~~~~~ll~l~~~R~~~~~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~~~ 86 (575)
.|+.++..+|+|+|++|.+|||++++|++|||++.+++|+|||+.+.||||+|+++++++++|+++|++.|...++.. +
T Consensus 161 ~~~~~l~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~-~ 239 (702)
T PLN02292 161 LWQARLDSIAVRLGLVGNICLAFLFYPVARGSSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVS-Q 239 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-h
Confidence 578889999999999999999999999999999999999999999999999999999999999999998886554432 3
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHcchHHhhhhhHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHh
Q 008159 87 MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLR 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~G~i~~~~~~~~~~~S~~~iRr~~ye~F~~~H~l~~~~~~~~~~H~~~~~~~~~~~~~~l~~~dr~~R 166 (575)
+..|..++..+++|+++++++++|+++|++++||+.||.|+++|++++++++++++|.+..+.++++|++++|++||++|
T Consensus 240 ~~~w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~YE~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR 319 (702)
T PLN02292 240 MLEWDRTGVSNLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLR 319 (702)
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHhhHHHHhcccHhHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45565555668999999999999999999999999999999999999888888899997655567889999999999999
Q ss_pred hhhccCceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHH
Q 008159 167 FIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSS 246 (575)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~ 246 (575)
+.|.+...++++++.++++++++++++++.++|+||||+++++|..+.+++|||||+|+|.+++++++++||..|++|++
T Consensus 320 ~~r~~~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~ 399 (702)
T PLN02292 320 FLQSRNNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTK 399 (702)
T ss_pred HHHhhcceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHH
Confidence 99988888999999999999999999988899999999999999988899999999999854567899999999999999
Q ss_pred HHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEe
Q 008159 247 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 326 (575)
Q Consensus 247 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~ 326 (575)
|++.++. .++..+.++.++||||.+..+..+++++++||||+||||++|+++++.++.. ++....++++|+|++
T Consensus 400 L~~~l~~-----gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~-~~~~~~~~V~LIw~v 473 (702)
T PLN02292 400 LYHMLSS-----SDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSS-TETCKIPKITLICAF 473 (702)
T ss_pred HHHhCCC-----CCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccc-cccCCCCcEEEEEEE
Confidence 9987651 1111134689999999886566678999999999999999999999987531 111123689999999
Q ss_pred CCcchhhhHHhHHHHhh--hccCCCceeEEEEEEeCCCCCcc-hhhhhhchhhhhhh-hccC--CCceeEEecCCchHHH
Q 008159 327 KSSQEICLLNSISPLLS--NQQSKKWHLTLKVFVTQEEQSSV-TVREVLNDLSLVRA-VRFG--TQSNYAVNGLESLIWM 400 (575)
Q Consensus 327 r~~~~l~~~~~l~~~l~--~~~~~~~~l~~~~~vT~~~~~~~-~~~g~~~~~~~~~~-~~~~--~~~~~~vcGp~~~~~~ 400 (575)
|+.+|+.+.+++.+++. ....+..++++++|+|+++.+.. +..| ++...++. .... +.....+|||+++.|+
T Consensus 474 R~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~ 551 (702)
T PLN02292 474 KNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPNLSDQPISPILGPNSWLWL 551 (702)
T ss_pred CCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCccccc--chhhhhhhcCCCCCCCCceEEEeCCCchHHH
Confidence 99999999998876542 11223468999999999876432 1122 22222121 1111 3467889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheEEe-cCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q 008159 401 AALVGITSILFVIFLISLNHIFV-PVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRL 479 (575)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~ 479 (575)
+++...+..+|+.+.+..++|++ |.++++ .+.+.|+.+++....+.+.+.+++.+ -.++-++.
T Consensus 552 ~~~~~~s~~~f~~~~~~~~~y~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~w~~~~ 615 (702)
T PLN02292 552 AAILSSSFLIFIIIIAIITRYHIYPIDQNS---------------NKYTLAYKSLIYLLVISISVVATSTA-AMLWNKKK 615 (702)
T ss_pred HHHHHHHHHHHHHHHHHhheeEeccccCCC---------------CCCccHHHHHHHHHHHHHHhhhhhhH-HHhhcccc
Confidence 99999999999999999999988 656554 22557888888888889988884433 34433322
Q ss_pred hc--CCCCCCc-CCCcccc--cCCCcceeeeeeecCCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhhhhh
Q 008159 480 KK--QTPPVSL-NQGKAVQ--VLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQC 554 (575)
Q Consensus 480 ~g--~v~~~~~-~~~~~~e--~~~~~v~~~~v~fg~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~~~~ 554 (575)
.. +....++ +..++.| |.+++++.+++|||+|||+++||+ +++|++|||+||||++|+++||++|++.+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~----~~~~~~vgvlv~gp~~~~~~va~~c~s~~-- 689 (702)
T PLN02292 616 YYKKSSQQVDNVDSPREIESSPQQLLVQRTNIHYGERPNLNKLLV----GLKGSSVGVLVCGPKKMRQKVAKICSSGL-- 689 (702)
T ss_pred cccchhccccccccccccccCcccccccceeeeccCCCCHHHHHH----hcCCCceeEEEECcHHHHHHHHHHHhcCC--
Confidence 11 1122221 1112222 677889999999999999999994 56899999999999999999999999944
Q ss_pred hhccCCCCCCceeeeccccc
Q 008159 555 FMMNANKDKPYFNFHSLNFT 574 (575)
Q Consensus 555 ~~~~~~~~~~~f~fhs~~f~ 574 (575)
+++|||||+|||
T Consensus 690 --------~~~~~~~s~sf~ 701 (702)
T PLN02292 690 --------AENLHFESISFS 701 (702)
T ss_pred --------CcceeEEeeccc
Confidence 789999999998
No 3
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=1.3e-88 Score=740.09 Aligned_cols=526 Identities=33% Similarity=0.652 Sum_probs=413.7
Q ss_pred ehhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHhCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhH
Q 008159 6 CRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQD 85 (575)
Q Consensus 6 ~~~~~~~~~~~~r~G~~a~~~~~ll~l~~~R~~~~~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~~ 85 (575)
..|+..+..+|+|+|++|.+|||++++|++|||++.+++|++||+++.||||+|+++++++++|++++++.|...+...
T Consensus 143 ~~~~~~l~~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~- 221 (699)
T PLN02631 143 KIWQAKFRAFGLRIGYVGHICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLM- 221 (699)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999988876544332
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHcchHHhhhhhHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHH
Q 008159 86 EMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLL 165 (575)
Q Consensus 86 ~~~~~~~~~~~~~~G~i~~~~~~~~~~~S~~~iRr~~ye~F~~~H~l~~~~~~~~~~H~~~~~~~~~~~~~~l~~~dr~~ 165 (575)
+...|......+++|+++++++++|+++|++++||+.||+|+++|++++++++++++|.++.+.+|++|++++|++||++
T Consensus 222 ~~~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~RRr~YE~F~~~Hillaifiv~~~~H~g~~w~~~~~~~ialw~~DR~l 301 (699)
T PLN02631 222 ETFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYL 301 (699)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHHHHheEEecCCchHHHHHHHHHHHHHHHHH
Confidence 23344444445689999999999999999999999999999999999998888999999877777889999999999999
Q ss_pred hhhhccCceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccH
Q 008159 166 RFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTS 245 (575)
Q Consensus 166 R~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~ 245 (575)
|++|+....++++++.+++|+++++++++++++|+||||++|++|..+.+|+|||||+|+|.++++.++++||+.|++|+
T Consensus 302 R~~r~~~~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~ 381 (699)
T PLN02631 302 RFLQSTKRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQ 381 (699)
T ss_pred HHHHHhceEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHH
Confidence 99998877888999999999999999988889999999999999998889999999999985456789999999999999
Q ss_pred HHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 008159 246 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 325 (575)
Q Consensus 246 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~ 325 (575)
+|++.++.. ..+.++.++||||.+..+..+++++|+||||+||||++|++++++++..+ ...+.++++|+|+
T Consensus 382 ~L~~~l~~~-------g~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~-~~~~~~~V~Li~~ 453 (699)
T PLN02631 382 KLYTHLSSS-------IDSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQN-PSTKLPDVLLVCS 453 (699)
T ss_pred HHHHhhhcC-------CCeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccc-cccCCCcEEEEEE
Confidence 999877510 02457999999998766666789999999999999999999999875321 1112358999999
Q ss_pred eCCcchhhhHHhHHHHhhhc-cCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhcc----CCCceeEEecCCchHHH
Q 008159 326 IKSSQEICLLNSISPLLSNQ-QSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRF----GTQSNYAVNGLESLIWM 400 (575)
Q Consensus 326 ~r~~~~l~~~~~l~~~l~~~-~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~vcGp~~~~~~ 400 (575)
+|+.+|+.+.||+.++.... ..++.++++++|+||++++. ..+... ...+..++ .+.....+.||+++.|+
T Consensus 454 vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~lw~ 529 (699)
T PLN02631 454 FKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP--ETTDDH--RLLQTKWFKPQPLDSPISPVLGPNNFLWL 529 (699)
T ss_pred ECCHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCCCCc--cccccc--ccccccccccCCCCCCceeeecCCccHHH
Confidence 99999999999997631110 11235899999999987643 111111 11122222 12356788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheEEe-cCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhh--hhHHHHHHHHh
Q 008159 401 AALVGITSILFVIFLISLNHIFV-PVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITG--STLMAILLRWR 477 (575)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C--~~G~C~~C~~~ 477 (575)
+++...+..+|+.+.+..++|++ |.|+++ ....+.|+.+++... +...| -+|..-.++-+
T Consensus 530 ~~~~~~s~~~f~~~~~~~~~y~i~~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~w~~ 592 (699)
T PLN02631 530 GVVILSSFVMFLLLIGIVTRYYIYPVDHNT--------------GSIYNFSYRGLWDMF---LGSVCIFISSSIVFLWRK 592 (699)
T ss_pred HHHHHHHHHHHHHHHHhhheeEecccCCCC--------------CcccchHHHHHHHHH---HHHhheeccceeeeeech
Confidence 99999999999999999999988 556554 112234555554441 11222 12211222221
Q ss_pred hhh--------cCCCC-------CCcCC-----Cccc--ccCCCcceeeeeeecCCCChHHHHHHHHhhcCCceeEEEec
Q 008159 478 RLK--------KQTPP-------VSLNQ-----GKAV--QVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVC 535 (575)
Q Consensus 478 ~~~--------g~v~~-------~~~~~-----~~~~--e~~~~~v~~~~v~fg~RPn~~~i~~~~~~~~~~~~vGV~~c 535 (575)
... ++++. .++.+ .++. +|.+++++.+++|||+|||+++||.+ +..+++|||+||
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~---~~~~~~vgvlv~ 669 (699)
T PLN02631 593 KQNKEGDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILLE---AEGSEDVGVMVC 669 (699)
T ss_pred hhccccccchhhccccccCCCCCCCCcccccccchhhhcccccccccceeeeecCCCCHHHHHHh---ccCCCceeEEEE
Confidence 111 11111 11110 0111 26678899999999999999999983 334469999999
Q ss_pred CccchHHHHHHHhhhhhhhhhccCCCCCCceeeeccccc
Q 008159 536 GPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFT 574 (575)
Q Consensus 536 Gp~~l~~~v~~~c~~~~~~~~~~~~~~~~~f~fhs~~f~ 574 (575)
||++|++|||++|++++ +++|||||+|||
T Consensus 670 gp~~~~~~va~~c~s~~----------~~~~~f~s~sf~ 698 (699)
T PLN02631 670 GPRKMRHEVAKICSSGL----------AKNLHFEAISFN 698 (699)
T ss_pred CcHHHHHHHHHHHhcCC----------CcceeEEeeccc
Confidence 99999999999999944 789999999998
No 4
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-68 Score=589.15 Aligned_cols=444 Identities=30% Similarity=0.564 Sum_probs=350.3
Q ss_pred hhhhhhhh--hhhHHHHHHHHHHHHHHHHhhhhhhHHHHhCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhh
Q 008159 7 RWQLKYLR--VATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQ 84 (575)
Q Consensus 7 ~~~~~~~~--~~~r~G~~a~~~~~ll~l~~~R~~~~~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~ 84 (575)
+|+..+.. ...|.|+++....++..+|..||+.+.+++|++++..+.+|+|.|++++...++|+..++++|...+...
T Consensus 184 ~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~ 263 (646)
T KOG0039|consen 184 FNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPFLVHGLEYTISLASELFFL 263 (646)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 45555444 3455555555555555588899999999999999999999999999999999999999988887655443
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHcchHHhhhhhHHHHHHHHHHHHHHHHHHhhcC-----ccchhHHHHHHHHH
Q 008159 85 DEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAG-----DRHFYMVFGGIFLF 159 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~G~i~~~~~~~~~~~S~~~iRr~~ye~F~~~H~l~~~~~~~~~~H~~-----~~~~~~~~~~~~l~ 159 (575)
.+.+.|..++..+++|+++++.+++|+++|++++||+.||.|||+||+++++++++++|+. ..|+|+++| +++|
T Consensus 264 ~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~~e~F~ytH~l~~v~~illi~hg~~~~~~~~w~~~~~p-~~ly 342 (646)
T KOG0039|consen 264 PKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGTTWMYIAVP-VLLY 342 (646)
T ss_pred chhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHH
Confidence 4466676677778999999999999999999999999999999999999999999999998 778888899 8899
Q ss_pred HHHHHHhhhhccCceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe
Q 008159 160 GLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC 239 (575)
Q Consensus 160 ~~dr~~R~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~ 239 (575)
++||+.|+.|+...++++++..+|+|+++|++++|+.++|+||||++|+||..+.+|||||||+|+| +|++++++||.
T Consensus 343 ~~dR~~r~~r~~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~ 420 (646)
T KOG0039|consen 343 ILDRILRFLRSQKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKA 420 (646)
T ss_pred HHHHHHHHHHHhcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEe
Confidence 9999999999988899999999999999999999999999999999999999999999999999999 67899999999
Q ss_pred CCCccHHHHHHHHh-cccCCccc-CcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCC----
Q 008159 240 DGEWTSSLYQMIHA-ELDSDADQ-MRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRK---- 313 (575)
Q Consensus 240 ~G~~T~~L~~~~~~-~~~~~~~~-~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~---- 313 (575)
.|+||++|++.+.+ ..+.+.+. ....++.||||||..++++.++++++|||||+|+||++|++++++.+.+.++
T Consensus 421 ~g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~ 500 (646)
T KOG0039|consen 421 LGDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP 500 (646)
T ss_pred cCcHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc
Confidence 99999999999873 22211111 1255799999999999999999999999999999999999999998754332
Q ss_pred ------CCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCc
Q 008159 314 ------YRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQS 387 (575)
Q Consensus 314 ------~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 387 (575)
....++++++|.+|+..++.|+..+...+.+.+. ..-.+++.|+|+.-... .. +
T Consensus 501 ~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~-~~~~e~~~~~t~~~~~~----------d~-~-------- 560 (646)
T KOG0039|consen 501 TSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDS-SGVIELHNYVTSSYEEG----------DA-R-------- 560 (646)
T ss_pred cccccccceecceeEEEEeccccchHHHHHHHHHHHHHHh-cCCchhheehhHhHhhh----------hh-h--------
Confidence 1245678888888888888888777665543321 12244555554321100 00 0
Q ss_pred eeEEecCCchHHHHHHHHHHHHHHHHHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhh
Q 008159 388 NYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGS 467 (575)
Q Consensus 388 ~~~vcGp~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~ 467 (575)
..+.+ +.+...+.
T Consensus 561 ---------~~~~~------------~~~~~~~~---------------------------------------------- 573 (646)
T KOG0039|consen 561 ---------SALIQ------------MVQKLLHA---------------------------------------------- 573 (646)
T ss_pred ---------hHHHH------------HHHhhccc----------------------------------------------
Confidence 00000 00000000
Q ss_pred hHHHHHHHHhhhhcCCCCCCcCCCcccccCCCcceeeeeeecCCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHH
Q 008159 468 TLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKT 547 (575)
Q Consensus 468 ~G~C~~C~~~~~~g~v~~~~~~~~~~~e~~~~~v~~~~v~fg~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~ 547 (575)
++..+. .++..+ .+|+ +||||+++|+++++.|++.+||||+|||++|.++++++
T Consensus 574 ------------~~~~di----------~~g~~~---~~~~-gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~ 627 (646)
T KOG0039|consen 574 ------------KNGVDI----------VTGLKV---ETHF-GRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKL 627 (646)
T ss_pred ------------ccCccc----------ccccee---eeeC-CCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHH
Confidence 000000 122223 4666 69999999999999999988999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCceeeecccc
Q 008159 548 SQRKSQCFMMNANKDKPYFNFHSLNF 573 (575)
Q Consensus 548 c~~~~~~~~~~~~~~~~~f~fhs~~f 573 (575)
|+++++ .++++|+||+|||
T Consensus 628 ~~~~~~-------~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 628 CNDFSS-------STATRFEFHKENF 646 (646)
T ss_pred HHhccc-------ccCceeeeeeccC
Confidence 999774 4789999999998
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-41 Score=331.54 Aligned_cols=360 Identities=18% Similarity=0.204 Sum_probs=254.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHhCCCchhHHHHHHHHHHHHHHHHHHHhhhhh-hhhcccchh---hHHHHHH
Q 008159 15 VATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTL-FVWGVSHHI---QDEMWRW 90 (575)
Q Consensus 15 ~~~r~G~~a~~~~~ll~l~~~R~~~~~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~-~~~~~~~~~---~~~~~~~ 90 (575)
...-.|.+|++.|++++++++|-+.+...+. +.|+.+.+|||.|.+++++.+.|-+... -.|....-+ ......|
T Consensus 40 ~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~-GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w~~~~~l~~k~a~v~~~ 118 (438)
T COG4097 40 FSQFLGFIALALMSLIFLLATRLPLIEAWFN-GLDKIYRFHKYTSILAILLLLAHNFILFIGNWLTLQLLNFKPAPVKPS 118 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHhhhhh-hhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcchhcccccccccccchh
Confidence 4456789999999999999999998887663 3599999999999999999999988743 344322100 0011111
Q ss_pred hhc--ccchhHHHHHHHHHHHHHHHcchHHhhhhhHHHHHHHHHHHHHHHHHHhhcCcc--chh-------HHHHHH---
Q 008159 91 QKT--GRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDR--HFY-------MVFGGI--- 156 (575)
Q Consensus 91 ~~~--~~~~~~G~i~~~~~~~~~~~S~~~iRr~~ye~F~~~H~l~~~~~~~~~~H~~~~--~~~-------~~~~~~--- 156 (575)
... ..-.-.|..+..+++.|.+.+.. .-+..||.|.++|.+.++.|++..+|.... ..| |...++
T Consensus 119 l~~~~~s~~elG~~~~yi~~~lllV~~l-~~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~all 197 (438)
T COG4097 119 LAGMWRSAKELGEWSAYIFIGLLLVWRL-WLNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFALL 197 (438)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHHHH
Confidence 000 00012344444444444333322 345689999999999999999999997421 111 221111
Q ss_pred HHHHHH--HHHhhhhcc-CceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCC-CCCccccCccccCCCCCCCc
Q 008159 157 FLFGLD--KLLRFIQSR-PETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQT 232 (575)
Q Consensus 157 ~l~~~d--r~~R~~~~~-~~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~-~~~~~hpfSI~s~p~~~~~~ 232 (575)
.+++.- -..+..+++ ....+...+..+.++++++.....++.|+||||.+++++.. +....|||||+++.. ..+
T Consensus 198 G~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~--~se 275 (438)
T COG4097 198 GLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHE--GSE 275 (438)
T ss_pred HHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCCC--Cce
Confidence 111111 122333333 34667777778888988888777777799999999999864 355689999999863 458
Q ss_pred EEEEEEeCCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCC-eEEEEEeCCChhhHHHHHHHHHHhhcc
Q 008159 233 MSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYD-SLLLVAGGIGITPFLSILQEIASAQSN 311 (575)
Q Consensus 233 l~l~Ik~~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~-~vvlIagGiGITP~lsil~~l~~~~~~ 311 (575)
+++.||..||+|+.|+|.++ +|+++.||||||.|. ++++. +.|+||||||||||+|+++.+..+.
T Consensus 276 l~FsIK~LGD~Tk~l~dnLk----------~G~k~~vdGPYG~F~--~~~g~~~QVWIAGGIGITPFis~l~~l~~~~-- 341 (438)
T COG4097 276 LRFSIKALGDFTKTLKDNLK----------VGTKLEVDGPYGKFD--FERGLNTQVWIAGGIGITPFISMLFTLAERK-- 341 (438)
T ss_pred EEEEehhhhhhhHHHHHhcc----------CCceEEEecCcceee--cccCCcccEEEecCcCcchHHHHHHhhcccc--
Confidence 99999999999999999988 799999999999985 34443 4999999999999999999998742
Q ss_pred CCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEE
Q 008159 312 RKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAV 391 (575)
Q Consensus 312 ~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v 391 (575)
..++|+|+|++|+.++..+.+|++++.+ +.+++.+++.-++++ |.++....++..+......++.
T Consensus 342 ----s~~~V~L~Y~~~n~e~~~y~~eLr~~~q----kl~~~~lHiiDSs~~-------g~l~~e~ler~~~~~~~~sv~f 406 (438)
T COG4097 342 ----SDPPVHLFYCSRNWEEALYAEELRALAQ----KLPNVVLHIIDSSKD-------GYLDQEDLERYPDRPRTRSVFF 406 (438)
T ss_pred ----cCCceEEEEEecCCchhHHHHHHHHHHh----cCCCeEEEEecCCCC-------CccCHHHhhccccccCcceEEE
Confidence 3588999999999999999999988743 236777777444333 3344333333211222358999
Q ss_pred ecCCchHHHHHHHHHHHH
Q 008159 392 NGLESLIWMAALVGITSI 409 (575)
Q Consensus 392 cGp~~~~~~~~v~~~~~~ 409 (575)
|||.+ ||++++..+..
T Consensus 407 CGP~~--m~dsL~r~l~~ 422 (438)
T COG4097 407 CGPIK--MMDSLRRDLKK 422 (438)
T ss_pred EcCHH--HHHHHHHHHHH
Confidence 99999 99999887665
No 6
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=1.6e-42 Score=358.21 Aligned_cols=296 Identities=13% Similarity=0.075 Sum_probs=233.5
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 250 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 250 (575)
..+|++++.+++++..+++..+..+.|+||||+.|.++.. ...+|||||+|.|. +++.++|+||+. |..|++|++.
T Consensus 11 ~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~-~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 11 RMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPG-VSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCC-CCCcEEEEEEEcCCCcchhHHHhc
Confidence 5678899999999999999877778999999999999853 33679999999986 567899999984 8899999887
Q ss_pred HHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 008159 251 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~ 330 (575)
++ +|+++.+.||+|.|.++....+++|||||||||||++||+++++..+ ...+++|+|++|+.+
T Consensus 89 l~----------~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~------~~~~v~l~y~~r~~~ 152 (332)
T PRK10684 89 VK----------RGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR------PQADVQVIFNVRTPQ 152 (332)
T ss_pred CC----------CCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCCEEEEEeCCChH
Confidence 76 79999999999999765445678999999999999999999987642 236899999999999
Q ss_pred hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHHH
Q 008159 331 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSIL 410 (575)
Q Consensus 331 ~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~~ 410 (575)
++.|.+++.++... ..++++++..+++. ......|++++....+.+.......+|+|||++ ||+++.+.+.+
T Consensus 153 ~~~~~~el~~l~~~----~~~~~~~~~~~~~~-~~~~~~grl~~~~l~~~~~~~~~~~vyiCGP~~--m~~~v~~~l~~- 224 (332)
T PRK10684 153 DVIFADEWRQLKQR----YPQLNLTLVAENNA-TEGFIAGRLTRELLQQAVPDLASRTVMTCGPAP--YMDWVEQEVKA- 224 (332)
T ss_pred HhhhHHHHHHHHHH----CCCeEEEEEeccCC-CCCccccccCHHHHHHhcccccCCEEEEECCHH--HHHHHHHHHHH-
Confidence 99999999876432 24566666655432 223356777754433322222346799999999 99999999887
Q ss_pred HHHHHHHhheE--EecC--CCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCC
Q 008159 411 FVIFLISLNHI--FVPV--EKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPV 486 (575)
Q Consensus 411 ~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~ 486 (575)
.|+....-|+ |.+. +.....+++.+..+++++.++.++|||++++++|++++++|+.|+||+|++++++|++++.
T Consensus 225 -~Gv~~~~i~~E~F~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~ 303 (332)
T PRK10684 225 -LGVTADRFFKEKFFTPVAEAATSGLTFTKLQPAREFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVS 303 (332)
T ss_pred -cCCCHHHeEeeccCCCCCCcCCCceEEEEecCCEEEEeCCCChHHHHHHHcCCCccCCCCCcCCCCCEEEEecCccccc
Confidence 5664333232 4432 1223467788888888999999999999999999999999999999999999999999987
Q ss_pred CcCCCcccc
Q 008159 487 SLNQGKAVQ 495 (575)
Q Consensus 487 ~~~~~~~~e 495 (575)
.+..+++.|
T Consensus 304 ~~~~l~~~~ 312 (332)
T PRK10684 304 STMTLTPAE 312 (332)
T ss_pred ccccCCHHH
Confidence 665555544
No 7
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=1.6e-40 Score=346.49 Aligned_cols=298 Identities=14% Similarity=0.137 Sum_probs=225.6
Q ss_pred ceeEEEEEEecCCeEEEEEecCC----CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCccHH
Q 008159 173 ETCILSARVFPSKAIELILPKHA----GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSS 246 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~----~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~ 246 (575)
..+|.+++.+++++.++++..|. .+.|+||||+.|.++..+...+|||||+|.| +++.++|+||+ .|..|++
T Consensus 3 ~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p--~~~~l~i~vk~~~~G~~S~~ 80 (352)
T TIGR02160 3 RLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAP--APGEIRVAVKKIPGGLFSTW 80 (352)
T ss_pred EeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCC--CCCcEEEEEEEeCCCcchHH
Confidence 45688889999999999998653 3689999999999975555578999999987 35789999998 4678999
Q ss_pred HHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcC--CCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEE
Q 008159 247 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL--RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 324 (575)
Q Consensus 247 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~--~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~ 324 (575)
|++.++ +|+.+.|.||+|.|..+.. ..+++||||||+||||++||+++++..+ ...+++|+|
T Consensus 81 l~~~l~----------~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~------~~~~v~l~~ 144 (352)
T TIGR02160 81 ANDEIR----------PGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE------PRSTFTLVY 144 (352)
T ss_pred HHhcCC----------CCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC------CCceEEEEE
Confidence 987776 7999999999999865432 2478999999999999999999998752 236899999
Q ss_pred EeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhh----ccCCCceeEEecCCchHHH
Q 008159 325 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAV----RFGTQSNYAVNGLESLIWM 400 (575)
Q Consensus 325 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~vcGp~~~~~~ 400 (575)
++|+.+++.|.+++.++... ...+++++..+++++..+.+..|+++.....+.+ ...+...+|+|||++ ||
T Consensus 145 ~~r~~~d~~~~~el~~l~~~---~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~--m~ 219 (352)
T TIGR02160 145 GNRRTASVMFAEELADLKDK---HPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQA--MV 219 (352)
T ss_pred EeCCHHHHHHHHHHHHHHHh---CcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHH--HH
Confidence 99999999999999876422 1235888888887765444445665433222221 112336799999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhheE--Eec---CC-------C-c-CccccccCCccccc---ccccCchhHHHHHHHHHHHHH
Q 008159 401 AALVGITSILFVIFLISLNHI--FVP---VE-------K-K-LPSEKLAAPSEKVV---SKEKTPSWVADLIILSSFIIA 463 (575)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~~~--~~~---~~-------~-~-~~~~~~~~~~~~~~---~~~~~~~sll~~l~~~g~~~~ 463 (575)
++++..+.. .|+....-|+ |.+ +. . . ...++|.+..+++. +.++.++||||+++++|++++
T Consensus 220 ~~v~~~L~~--~Gv~~~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~slL~~~~~~gi~~~ 297 (352)
T TIGR02160 220 DDAEQALTG--LGVPAGRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVTLDGRSTETSSLSRDESVLDAALRARPDLP 297 (352)
T ss_pred HHHHHHHHH--cCCCHHHEEEEeccCCCCCcccccccccccCCCceEEEEEECCceEEEEecCCCCcHHHHHHHcCCCCc
Confidence 999999887 6664443333 443 11 0 1 12344444444443 356788999999999999999
Q ss_pred hhhhhHHHHHHHHhhhhcCCCCCCcCCCcccc
Q 008159 464 ITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQ 495 (575)
Q Consensus 464 ~~C~~G~C~~C~~~~~~g~v~~~~~~~~~~~e 495 (575)
++|+.|+||+|++++++|+|++..+..+++.|
T Consensus 298 ~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~ 329 (352)
T TIGR02160 298 FACKGGVCGTCRAKVLEGKVDMERNYALEPDE 329 (352)
T ss_pred CCCCCccCCCCEEEEeccccccccccCCCHHH
Confidence 99999999999999999999987665555443
No 8
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=3.7e-32 Score=268.81 Aligned_cols=253 Identities=19% Similarity=0.241 Sum_probs=193.5
Q ss_pred CceeEEEEEEecCCeEEEEEecCCCC--cccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHH
Q 008159 172 PETCILSARVFPSKAIELILPKHAGL--KFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSL 247 (575)
Q Consensus 172 ~~~~v~~~~~~~~~~~~l~~~~~~~~--~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L 247 (575)
...+|.+++..+++++++++..+.+. .|+||||+.|.++..+...+|.|||+|+|. +++.+.|.||+. |..|++|
T Consensus 6 ~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~-~~~~~~isVk~~~~G~~S~~L 84 (266)
T COG1018 6 RRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPD-EDSLYRISVKREDGGGGSNWL 84 (266)
T ss_pred EEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCC-CCceEEEEEEEeCCCcccHHH
Confidence 35678999999999999999998876 599999999999988778999999999997 456899999993 8999999
Q ss_pred HHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeC
Q 008159 248 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 327 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r 327 (575)
++.++ +||+|.|.+|.|.|.++....++++|+||||||||++||++++...+ . .+|.|+|++|
T Consensus 85 h~~lk----------~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------~-~~v~l~h~~R 147 (266)
T COG1018 85 HDHLK----------VGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------P-ADVVLVHAAR 147 (266)
T ss_pred HhcCC----------CCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------C-CCEEEEEecC
Confidence 99888 89999999999999887656668999999999999999999998863 3 7899999999
Q ss_pred CcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHH
Q 008159 328 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGIT 407 (575)
Q Consensus 328 ~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~ 407 (575)
+.++++|.++ ..++.+.. ....+..+.. +....|+++...+........ ..+|+|||++ ||+++...+
T Consensus 148 ~~~~~af~de-~~l~~~~~---~~~~~~~~~~-----~~~~~g~~~~~~l~~~~~~~~-r~~y~CGp~~--fm~av~~~l 215 (266)
T COG1018 148 TPADLAFRDE-LELAAELP---NALLLGLYTE-----RGKLQGRIDVSRLLSAAPDGG-REVYLCGPGP--FMQAVRLAL 215 (266)
T ss_pred ChhhcchhhH-HHHHhhCC---CCeeEEEEEe-----cCCccccccHHHHhccCCCCC-CEEEEECCHH--HHHHHHHHH
Confidence 9999999998 55543221 2244554443 112234444333322222222 7899999999 999999998
Q ss_pred HHHHHHHHHHhheE--EecCCCcC-cccccc-CCcccccccccCchhHHHHHH
Q 008159 408 SILFVIFLISLNHI--FVPVEKKL-PSEKLA-APSEKVVSKEKTPSWVADLII 456 (575)
Q Consensus 408 ~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~sll~~l~ 456 (575)
.+ +++....-|+ |.|....+ +..... +..+++.+.+++++|+||+++
T Consensus 216 ~~--~g~~~~~vh~E~F~~~~~~~~~~~~~~~~~~s~~~~~~~~g~t~lea~~ 266 (266)
T COG1018 216 EA--LGVPDDRVHLEGFGPMLKDTAALLPFTTLARSGKEVRVPPGQTLLEAAE 266 (266)
T ss_pred HH--cCCChhcEEEeecCCCCccccccccchhhccccceEecCCCchHHHhhC
Confidence 77 5664444444 44443222 122233 666777888899999999863
No 9
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=1.7e-32 Score=277.48 Aligned_cols=243 Identities=17% Similarity=0.184 Sum_probs=178.1
Q ss_pred ceeEEEEEEecCCe--EEEEEecC---CCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHH
Q 008159 173 ETCILSARVFPSKA--IELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSL 247 (575)
Q Consensus 173 ~~~v~~~~~~~~~~--~~l~~~~~---~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L 247 (575)
..+|++++.+++++ +.+.++.+ +.+.|+||||+.|++|..+ .|||||+|.|. +++.++|+||+.|.+|++|
T Consensus 7 ~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~-~~~~l~l~Ik~~G~~S~~L 82 (289)
T PRK08345 7 DAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPT-RKGFFELCIRRAGRVTTVI 82 (289)
T ss_pred eEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCC-CCCEEEEEEEeCChHHHHH
Confidence 46788999998874 55555444 2467999999999998653 38999999886 5678999999999999999
Q ss_pred HHHHHhcccCCcccCcceeEEEeCCCCCC-CCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEe
Q 008159 248 YQMIHAELDSDADQMRCIPVAIEGPYGPA-TMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 326 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~-~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~ 326 (575)
.+ ++ +|+++.|+||||.+ ..+....++++||||||||||++||+++++... ...++++|+|++
T Consensus 83 ~~-l~----------~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~-----~~~~~v~l~~~~ 146 (289)
T PRK08345 83 HR-LK----------EGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR-----WKYGNITLIYGA 146 (289)
T ss_pred Hh-CC----------CCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC-----CCCCcEEEEEec
Confidence 74 44 69999999999984 333224468999999999999999999988642 123689999999
Q ss_pred CCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcc------h-----hhhhhchhhhhhhhccCCCceeEEecCC
Q 008159 327 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSV------T-----VREVLNDLSLVRAVRFGTQSNYAVNGLE 395 (575)
Q Consensus 327 r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~------~-----~~g~~~~~~~~~~~~~~~~~~~~vcGp~ 395 (575)
|+.+++.+.+++.++.. ...+++++..++++++... + ..|++++...... ...+...+|+|||+
T Consensus 147 r~~~d~~~~deL~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~vyiCGP~ 221 (289)
T PRK08345 147 KYYEDLLFYDELIKDLA----EAENVKIIQSVTRDPEWPGCHGLPQGFIERVCKGVVTDLFREAN-TDPKNTYAAICGPP 221 (289)
T ss_pred CCHHHhhHHHHHHHHHh----cCCCEEEEEEecCCCCCcCccccccccccccccCchhhhhhhcC-CCccccEEEEECCH
Confidence 99999999999987642 2367888888988653211 0 1344443222111 11234579999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 008159 396 SLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLR 475 (575)
Q Consensus 396 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~ 475 (575)
+ ||+++.+.+.+ .|+....-++ .++-.|.|+.|.|+.|+
T Consensus 222 ~--m~~~v~~~L~~--~Gv~~~~i~~-------------------------------------~l~~~m~cg~g~c~~c~ 260 (289)
T PRK08345 222 V--MYKFVFKELIN--RGYRPERIYV-------------------------------------TLERRMRCGIGKCGHCI 260 (289)
T ss_pred H--HHHHHHHHHHH--cCCCHHHEEE-------------------------------------EehhcccccCcccCCCc
Confidence 9 99999998877 4542222221 12234899999999999
Q ss_pred Hhhhhc
Q 008159 476 WRRLKK 481 (575)
Q Consensus 476 ~~~~~g 481 (575)
++...|
T Consensus 261 ~~~~~~ 266 (289)
T PRK08345 261 VGTSTS 266 (289)
T ss_pred cCCCCc
Confidence 886554
No 10
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=2.7e-32 Score=271.18 Aligned_cols=235 Identities=17% Similarity=0.219 Sum_probs=175.9
Q ss_pred EEEEEEecCCeEEEEEecCC----CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHH
Q 008159 176 ILSARVFPSKAIELILPKHA----GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMI 251 (575)
Q Consensus 176 v~~~~~~~~~~~~l~~~~~~----~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~ 251 (575)
|++++.+++++.++++..++ .++|+||||+.|.+|..+ .|||||+|.|. +++.++|+||..|.+|++|++ +
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~-~~~~l~~~Ik~~G~~S~~L~~-l 75 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPT-RRGPLELTIRRVGRVTEALHE-L 75 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCC-CCCeEEEEEEeCChhhHHHHc-C
Confidence 35677788876666655433 378999999999998654 38999999985 467899999999999999974 4
Q ss_pred HhcccCCcccCcceeEEEeCCCCCCC-CCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 008159 252 HAELDSDADQMRCIPVAIEGPYGPAT-MDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 330 (575)
Q Consensus 252 ~~~~~~~~~~~~g~~v~v~GPyG~~~-~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~ 330 (575)
+ +|+++.++||||.+. .+...++++|+||||+||||++||++++++.. ...++++|+|++|+.+
T Consensus 76 ~----------~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~-----~~~~~i~Li~~~r~~~ 140 (253)
T cd06221 76 K----------PGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNR-----EDYGKVTLLYGARTPE 140 (253)
T ss_pred C----------CCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhcc-----ccCCcEEEEEecCChH
Confidence 4 699999999999953 33225689999999999999999999998752 1237899999999999
Q ss_pred hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHHH
Q 008159 331 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSIL 410 (575)
Q Consensus 331 ~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~~ 410 (575)
++.+.+++.++.. + .++++.++++++++.+.+..|++++..... ........+|+|||++ |++++.+.+..
T Consensus 141 ~~~~~~~L~~l~~----~-~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~-~~~~~~~~vyicGp~~--mv~~~~~~L~~- 211 (253)
T cd06221 141 DLLFKEELKEWAK----R-SDVEVILTVDRAEEGWTGNVGLVTDLLPEL-TLDPDNTVAIVCGPPI--MMRFVAKELLK- 211 (253)
T ss_pred HcchHHHHHHHHh----c-CCeEEEEEeCCCCCCccCCccccchhHHhc-CCCcCCcEEEEECCHH--HHHHHHHHHHH-
Confidence 9999999987642 2 467888888876544444556666533221 1112457899999999 99999988876
Q ss_pred HHHHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 008159 411 FVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWR 477 (575)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~ 477 (575)
.|+.. ++++. .+...+.|+.|+||+|++.
T Consensus 212 -~Gv~~--~~i~~-----------------------------------~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 212 -LGVPE--EQIWV-----------------------------------SLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred -cCCCH--HHEEE-----------------------------------ehhhccccCCccccCcccC
Confidence 34311 11211 1244589999999999876
No 11
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.97 E-value=1.7e-31 Score=266.56 Aligned_cols=233 Identities=14% Similarity=0.157 Sum_probs=175.5
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 252 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 252 (575)
+.+|++++.+++++.++++..+ ..|+||||+.|++|..+ .|||||++.+ ++.++|+||..|..|++|.+ ++
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~-l~ 79 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFN-LK 79 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHh-CC
Confidence 4678899999999999999864 47999999999998654 3999998864 56899999999999999974 44
Q ss_pred hcccCCcccCcceeEEEeCCCCC-CCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 008159 253 AELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 331 (575)
Q Consensus 253 ~~~~~~~~~~~g~~v~v~GPyG~-~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~ 331 (575)
+|+.+.|+||+|. |..+....+++||||||+||||++||+++++... ...++++|+|++|+.++
T Consensus 80 ----------~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~-----~~~~~v~L~~g~r~~~~ 144 (263)
T PRK08221 80 ----------EGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP-----QEIKSLDLILGFKNPDD 144 (263)
T ss_pred ----------CCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHH
Confidence 6999999999998 5544334679999999999999999999987642 12368999999999999
Q ss_pred hhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHHHH
Q 008159 332 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILF 411 (575)
Q Consensus 332 l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~~~ 411 (575)
+.+.+++.++.. +..+++.+++++..+.+..|++++..........+...+|+|||++ |++++.+.+.+
T Consensus 145 l~~~~el~~~~~-------~~~~~~~~~~~~~~~~~~~G~v~~~l~~~~~~~~~~~~vylCGp~~--mv~~~~~~L~~-- 213 (263)
T PRK08221 145 ILFKEDLKRWRE-------KINLILTLDEGEEGYRGNVGLVTKYIPELTLKDIDNMQVIVVGPPI--MMKFTVLEFLK-- 213 (263)
T ss_pred hhHHHHHHHHhh-------cCcEEEEecCCCCCCccCccccChhhHhccCCCcCCeEEEEECCHH--HHHHHHHHHHH--
Confidence 999999987532 1234444555544444566777754322111112346799999999 99999988876
Q ss_pred HHHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 008159 412 VIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWR 477 (575)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~ 477 (575)
.|+. .++++.. ++..|.|+.|+||+|++.
T Consensus 214 ~Gv~--~~~i~~~-----------------------------------~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 214 RGIK--EENIWVS-----------------------------------YERKMCCGVGKCGHCKID 242 (263)
T ss_pred cCCC--HHHEEEE-----------------------------------ecceeEccCcccCCcccC
Confidence 4442 2222211 223489999999999966
No 12
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.97 E-value=1.1e-31 Score=270.65 Aligned_cols=253 Identities=18% Similarity=0.237 Sum_probs=186.7
Q ss_pred eeEEEEEEecCCeEEEEEecCC-CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHH
Q 008159 174 TCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 252 (575)
Q Consensus 174 ~~v~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 252 (575)
.+|++++.+++++.++++..|. ...|+||||+.|+++..+ ++|||||+|.|. +++.++|+||..|..|++|. .++
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~-~~~~i~l~vk~~G~~T~~L~-~l~ 77 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDR-EKGTITIVFQAVGKSTRKLA-ELK 77 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcC-CCCEEEEEEEeCCcHHHHHh-cCC
Confidence 3578889999999999998764 367999999999997543 579999999875 56789999999999999997 444
Q ss_pred hcccCCcccCcceeE-EEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 008159 253 AELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 331 (575)
Q Consensus 253 ~~~~~~~~~~~g~~v-~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~ 331 (575)
+|+.+ .|.||+|++... ...+++++||||+||||++++++++.++ ..+++++|++|+.++
T Consensus 78 ----------~Gd~v~~i~GP~G~~~~~-~~~~~~llIaGGiGiaPl~~l~~~l~~~--------~~~v~l~~g~r~~~d 138 (281)
T PRK06222 78 ----------EGDSILDVVGPLGKPSEI-EKFGTVVCVGGGVGIAPVYPIAKALKEA--------GNKVITIIGARNKDL 138 (281)
T ss_pred ----------CCCEEeeEEcCCCCCccc-CCCCeEEEEeCcCcHHHHHHHHHHHHHC--------CCeEEEEEecCCHHH
Confidence 69999 699999997643 3467999999999999999999998764 257999999999999
Q ss_pred hhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCC-CceeEEecCCchHHHHHHHHHHHHH
Q 008159 332 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGT-QSNYAVNGLESLIWMAALVGITSIL 410 (575)
Q Consensus 332 l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~vcGp~~~~~~~~v~~~~~~~ 410 (575)
+.+.+++.++. . ++ +++.+++ +.+.+|++++... +.....+ .+.+|+|||++ ||+++.+.+.+
T Consensus 139 ~~~~~el~~~~-------~--~~--~v~~~d~-~~g~~G~v~~~l~-~~~~~~~~~~~vy~CGP~~--M~~~v~~~l~~- 202 (281)
T PRK06222 139 LILEDEMKAVS-------D--EL--YVTTDDG-SYGRKGFVTDVLK-ELLESGKKVDRVVAIGPVI--MMKFVAELTKP- 202 (281)
T ss_pred hhcHHHHHhhC-------C--eE--EEEcCCC-CcCcccchHHHHH-HHhhcCCCCcEEEEECCHH--HHHHHHHHHHh-
Confidence 99999987642 1 11 2344443 4556777776432 2222222 35799999999 99999887665
Q ss_pred HHHHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCcCC
Q 008159 411 FVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQ 490 (575)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~~~~~ 490 (575)
.++ ..+ .+++-.|+|+.|+|+.|+++.. |.
T Consensus 203 -~gv-----~~~-----------------------------------~sle~~M~CG~G~C~~C~v~~~-~~-------- 232 (281)
T PRK06222 203 -YGI-----KTI-----------------------------------VSLNPIMVDGTGMCGACRVTVG-GE-------- 232 (281)
T ss_pred -cCC-----CEE-----------------------------------EECcccccCcccccceeEEEEC-CC--------
Confidence 222 000 1233358999999999998642 31
Q ss_pred CcccccCCCcceeeeeeecCCCChHHHHHHH
Q 008159 491 GKAVQVLGPIEEEHEINFGGRPNFEEIFSEL 521 (575)
Q Consensus 491 ~~~~e~~~~~v~~~~v~fg~RPn~~~i~~~~ 521 (575)
....|..+|.. + ..+-+|+++.++.
T Consensus 233 ~~~~C~dGPvF-----~-~~~v~~~~~~~~~ 257 (281)
T PRK06222 233 TKFACVDGPEF-----D-GHLVDFDELMRRL 257 (281)
T ss_pred EEEEeCCCCee-----e-CCEEeHHHHHHHH
Confidence 12455667622 2 3566888887765
No 13
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.97 E-value=1.2e-31 Score=265.34 Aligned_cols=227 Identities=19% Similarity=0.261 Sum_probs=172.3
Q ss_pred EEEEEEecCCeEEEEEecCC-CCcccCCeEEEEEeCC-CCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHHh
Q 008159 176 ILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPS-ISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 253 (575)
Q Consensus 176 v~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~-~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~ 253 (575)
|++++.+++++.+++++.+. .+.|+||||+.|.+|. .++..+|||||+|.|. +++.++|+||..|.+|++|.+ ++
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~-~~~~l~l~v~~~G~~s~~l~~-l~- 77 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDP-EEGTITLLYKVVGKGTRLLSE-LK- 77 (246)
T ss_pred CcceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccC-CCCEEEEEEEEECcchHHHhc-CC-
Confidence 35678889999999999876 6789999999999986 4566889999999875 467899999999999998864 33
Q ss_pred cccCCcccCcceeEEEeCCCCC-CCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 008159 254 ELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 332 (575)
Q Consensus 254 ~~~~~~~~~~g~~v~v~GPyG~-~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l 332 (575)
+|+++.|+||+|. +..+ ...++++|||||+||||++||++++... .++++|+|++|+.+++
T Consensus 78 ---------~Gd~v~i~gP~G~~~~~~-~~~~~~vlIagGtGIaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~ 139 (246)
T cd06218 78 ---------AGDELDVLGPLGNGFDLP-DDDGKVLLVGGGIGIAPLLFLAKQLAER--------GIKVTVLLGFRSADDL 139 (246)
T ss_pred ---------CCCEEEEEecCCCCcCCC-CCCCcEEEEecccCHHHHHHHHHHHHhc--------CCceEEEEEccchhhh
Confidence 6999999999997 4433 3578999999999999999999998763 2679999999999999
Q ss_pred hhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHHHHH
Q 008159 333 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFV 412 (575)
Q Consensus 333 ~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~~~~ 412 (575)
.+.+++.++. . ++. ++.+++ +.+.+|++.+... +.........+|+|||.+ |++++++.+.+ .
T Consensus 140 ~~~~eL~~l~-------~--~~~--~~~~~~-~~~~~g~v~~~l~-~~~~~~~~~~vyiCGp~~--mv~~~~~~L~~--~ 202 (246)
T cd06218 140 FLVEEFEALG-------A--EVY--VATDDG-SAGTKGFVTDLLK-ELLAEARPDVVYACGPEP--MLKAVAELAAE--R 202 (246)
T ss_pred hhHHHHHhhC-------C--cEE--EEcCCC-CCCcceehHHHHH-HHhhccCCCEEEEECCHH--HHHHHHHHHHh--c
Confidence 9999997751 1 222 233322 3334566665332 222222457899999999 99999988766 3
Q ss_pred HHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh
Q 008159 413 IFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLK 480 (575)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~ 480 (575)
|+ ..++ .++-.|.|+.|+||+|+....+
T Consensus 203 Gv---~~~~-------------------------------------~~~~~~~~~~g~c~~c~~~~~~ 230 (246)
T cd06218 203 GV---PCQV-------------------------------------SLEERMACGIGACLGCVVKTKD 230 (246)
T ss_pred CC---CEEE-------------------------------------EecccccCccceecccEEEeec
Confidence 32 1111 1223589999999999876654
No 14
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.97 E-value=3.9e-31 Score=261.73 Aligned_cols=197 Identities=19% Similarity=0.298 Sum_probs=153.2
Q ss_pred EEEEEecCCeEEEEEecCC-CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHHhcc
Q 008159 177 LSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAEL 255 (575)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~~~ 255 (575)
++++.+++++++++++.|. .+.|+||||+.|++|..+...+|||||+|.|. ++++++|+||..|..|++|. .++
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~-~~~~l~l~i~~~G~~t~~l~-~~~--- 76 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDP-EEGTISLLVEIRGPKTKLIA-ELK--- 76 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCC-CCCEEEEEEEEcCchHHHHH-hCC---
Confidence 5677889999999998764 47899999999999865556899999999986 56899999999999999986 344
Q ss_pred cCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhH
Q 008159 256 DSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLL 335 (575)
Q Consensus 256 ~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~ 335 (575)
+|+.+.|.||+|.+.......++++|||||+||||+++|++++... .++++++|++|+.+++.+.
T Consensus 77 -------~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------~~~v~l~~~~r~~~d~~~~ 141 (243)
T cd06192 77 -------PGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------GNKVTVLAGAKKAKEEFLD 141 (243)
T ss_pred -------CCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC--------CCeEEEEEecCcHHHHHHH
Confidence 6999999999998765433478999999999999999999998864 2689999999999999998
Q ss_pred HhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 336 NSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 336 ~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
+++.++. ...++++++ + +.+..|.+.+.. ......+...+|+|||.+ |++++.+.+..
T Consensus 142 ~el~~~~----------~~~~~~~~~-~-~~~~~g~v~~~~--~~~~~~~~~~v~icGp~~--mv~~~~~~l~~ 199 (243)
T cd06192 142 EYFELPA----------DVEIWTTDD-G-ELGLEGKVTDSD--KPIPLEDVDRIIVAGSDI--MMKAVVEALDE 199 (243)
T ss_pred HHHHhhc----------CeEEEEecC-C-CCccceeechhh--hhhhcccCCEEEEECCHH--HHHHHHHHHHh
Confidence 8886631 123344433 2 334455554431 111122335799999999 99999988766
No 15
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.97 E-value=2.9e-31 Score=263.58 Aligned_cols=196 Identities=18% Similarity=0.306 Sum_probs=155.5
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 252 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 252 (575)
..+|++++.+++++.++++..++.+.|+||||+.|.+|..++..+|||||+|.| ++.++|+||..|.+|++|.+ ++
T Consensus 6 ~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~G~~t~~l~~-l~ 81 (250)
T PRK00054 6 NMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKVGEGTKKLSK-LK 81 (250)
T ss_pred EEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEcChHHHHHhc-CC
Confidence 467889999999999999997777899999999999997766679999999986 46899999999999998874 44
Q ss_pred hcccCCcccCcceeEEEeCCCCC-CCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 008159 253 AELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 331 (575)
Q Consensus 253 ~~~~~~~~~~~g~~v~v~GPyG~-~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~ 331 (575)
+|+++.|.||||. |.++ ...+++++||||+||||++|+++++...+ .+++++|++|+.++
T Consensus 82 ----------~G~~v~i~gP~G~~f~l~-~~~~~~vlIagG~GiaP~~s~l~~~~~~~--------~~v~l~~~~r~~~d 142 (250)
T PRK00054 82 ----------EGDELDIRGPLGNGFDLE-EIGGKVLLVGGGIGVAPLYELAKELKKKG--------VEVTTVLGARTKDE 142 (250)
T ss_pred ----------CCCEEEEEcccCCCCCCC-CCCCeEEEEeccccHHHHHHHHHHHHHcC--------CcEEEEEEcCCHHH
Confidence 6999999999997 5443 36689999999999999999999998642 57999999999999
Q ss_pred hhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 332 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 332 l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
+.+.+++.+. . + + +++.+++ +.+.+|++++...... .+.+.+|+|||.+ |++++.+.+..
T Consensus 143 ~~~~~el~~~-~-------~--~--~~~~~~~-~~~~~g~v~~~l~~~~---~~~~~vyvCGp~~--m~~~v~~~l~~ 202 (250)
T PRK00054 143 VIFEEEFAKV-G-------D--V--YVTTDDG-SYGFKGFVTDVLDELD---SEYDAIYSCGPEI--MMKKVVEILKE 202 (250)
T ss_pred hhhHHHHHhc-C-------C--E--EEEecCC-CCCcccchhHhHhhhc---cCCCEEEEeCCHH--HHHHHHHHHHH
Confidence 9999988762 1 1 1 2222322 3344566665432211 2346799999999 99999988766
No 16
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.97 E-value=2e-30 Score=253.57 Aligned_cols=208 Identities=17% Similarity=0.197 Sum_probs=171.0
Q ss_pred eEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHHHH
Q 008159 175 CILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIH 252 (575)
Q Consensus 175 ~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~ 252 (575)
++++++.++++++++++..+..+.|+||||+.|.+|.. .+|||||+|.|. +++.++|+||.. |.+|++|.+.++
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPH-EDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCC-CCCeEEEEEEecCCCccHHHHHHhcc
Confidence 57788889999999999987778999999999999864 589999999985 467899999985 889999998776
Q ss_pred hcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 008159 253 AELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 332 (575)
Q Consensus 253 ~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l 332 (575)
+|+++.|.||||.+..+...+++++|||||+||||++|+++++.... ..++++|+|++|+.+++
T Consensus 78 ----------~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~ 141 (224)
T cd06189 78 ----------ENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDL 141 (224)
T ss_pred ----------CCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhc
Confidence 79999999999998765445789999999999999999999998752 24689999999999999
Q ss_pred hhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 333 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 333 ~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
.+.+++.++.. +..++++..+++++++.+.+..|++++...... .......+|+|||.+ ||+++.+.+.+
T Consensus 142 ~~~~~l~~l~~----~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~-~~~~~~~v~vCGp~~--m~~~~~~~l~~ 211 (224)
T cd06189 142 YLDELLEAWAE----AHPNFTYVPVLSEPEEGWQGRTGLVHEAVLEDF-PDLSDFDVYACGSPE--MVYAARDDFVE 211 (224)
T ss_pred cCHHHHHHHHH----hCCCeEEEEEeCCCCcCCccccccHHHHHHhhc-cCccccEEEEECCHH--HHHHHHHHHHH
Confidence 99999887643 235788888888876545556677776543222 112346799999999 99999999877
No 17
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.97 E-value=3.7e-31 Score=262.39 Aligned_cols=224 Identities=17% Similarity=0.206 Sum_probs=168.1
Q ss_pred eEEEEEEecCCeEEEEEecCC-CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHHh
Q 008159 175 CILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 253 (575)
Q Consensus 175 ~v~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~ 253 (575)
++++++.++++++.++++.|. ...|+||||+.|+++..+ ++|||||+|.|. +++.++|+||..|..|.+|.+ ++
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~~--~~~pySi~s~~~-~~~~~~~~vk~~G~~t~~l~~-l~- 76 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKG--ERIPLTIADWDP-EKGTITIVVQVVGKSTRELAT-LE- 76 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCCC--CccceEeEEEcC-CCCEEEEEEEeCCchHHHHHh-cC-
Confidence 467888899999999998765 358999999999986433 679999999875 567999999999999988854 44
Q ss_pred cccCCcccCcceeE-EEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 008159 254 ELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 332 (575)
Q Consensus 254 ~~~~~~~~~~g~~v-~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l 332 (575)
+|+++ .++||+|.+... .+.++++|||||+||||++||++++... .++++|+|++|+.+++
T Consensus 77 ---------~G~~v~~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~--------~~~v~l~~~~r~~~~~ 138 (248)
T cd06219 77 ---------EGDKIHDVVGPLGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEA--------GNRVITIIGARTKDLV 138 (248)
T ss_pred ---------CCCEeeeeecCCCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHc--------CCeEEEEEEcCCHHHh
Confidence 58999 699999998643 4568999999999999999999998764 2679999999999999
Q ss_pred hhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhh-ccCCCceeEEecCCchHHHHHHHHHHHHHH
Q 008159 333 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAV-RFGTQSNYAVNGLESLIWMAALVGITSILF 411 (575)
Q Consensus 333 ~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~vcGp~~~~~~~~v~~~~~~~~ 411 (575)
.+.+++.++.. ++ .+.+++ + +.+..|++++... +.. ...+.+.+|+|||.+ |++++.+.+.+
T Consensus 139 ~~~~el~~l~~---------~~-~~~~~~-~-~~~~~g~v~~~l~-~~~~~~~~~~~vyiCGP~~--m~~~~~~~l~~-- 201 (248)
T cd06219 139 ILEDEFRAVSD---------EL-IITTDD-G-SYGEKGFVTDPLK-ELIESGEKVDLVIAIGPPI--MMKAVSELTRP-- 201 (248)
T ss_pred hhHHHHHhhcC---------eE-EEEeCC-C-CCCccccchHHHH-HHHhccCCccEEEEECCHH--HHHHHHHHHHH--
Confidence 99999987521 11 222332 2 3334566654332 222 222345799999999 99999887655
Q ss_pred HHHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 008159 412 VIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRR 478 (575)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~ 478 (575)
.|+ ..+ ++++-.|.|+.|+|++|+++.
T Consensus 202 ~Gv----~~~------------------------------------~s~e~~m~Cg~G~C~~C~~~~ 228 (248)
T cd06219 202 YGI----PTV------------------------------------VSLNPIMVDGTGMCGACRVTV 228 (248)
T ss_pred cCC----CEE------------------------------------EEecccccCccceeeeEEEEe
Confidence 222 011 123335899999999998874
No 18
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.97 E-value=3.9e-30 Score=252.72 Aligned_cols=215 Identities=19% Similarity=0.216 Sum_probs=173.8
Q ss_pred eEEEEEEecCCeEEEEEecCCC--CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHH
Q 008159 175 CILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 250 (575)
Q Consensus 175 ~v~~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 250 (575)
++++++.+++++.+++++.+.. +.|+||||+.|++|..+...+|||||+|.|. +++.++|+||.. |.+|++|.+.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEEcCCCcchHHHHhc
Confidence 5788889999999999988765 7899999999999876666789999999986 566799999985 8999999876
Q ss_pred HHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 008159 251 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~ 330 (575)
++ +|+.+.|.||||.+..+....++++|||||+||||+++|++++...+ ..++++++|++|+.+
T Consensus 81 ~~----------~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~ 144 (231)
T cd06215 81 LK----------VGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR------PDADIVFIHSARSPA 144 (231)
T ss_pred CC----------CCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCcEEEEEecCChh
Confidence 65 69999999999998754444789999999999999999999998652 246799999999999
Q ss_pred hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCC-cchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 331 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 331 ~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
++.+.+++.++..+ ..++++++++|++++. +.+..|++++....+.........+|+|||.+ ||+++.+.+.+
T Consensus 145 ~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~v~icGp~~--m~~~~~~~l~~ 218 (231)
T cd06215 145 DIIFADELEELARR----HPNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLKERTVFVCGPAG--FMKAVKSLLAE 218 (231)
T ss_pred hhhHHHHHHHHHHH----CCCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCccCCeEEEECCHH--HHHHHHHHHHH
Confidence 99999998776432 3568888889887653 45566788764443332222346799999999 99999999876
Q ss_pred HHHHH
Q 008159 410 LFVIF 414 (575)
Q Consensus 410 ~~~~~ 414 (575)
.|+
T Consensus 219 --~gv 221 (231)
T cd06215 219 --LGF 221 (231)
T ss_pred --cCC
Confidence 444
No 19
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.97 E-value=1.5e-30 Score=259.54 Aligned_cols=233 Identities=14% Similarity=0.168 Sum_probs=173.2
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 252 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 252 (575)
.+.+++....+++++.+.++.+ +.|+||||+.|.+|..+ .|||||++. +++.++|+||..|..|.+|.+ ++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~---~~~~l~~~Vk~~G~~S~~L~~-l~ 77 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGI---GEGYIDLTIRRVGKVTDEVFT-LK 77 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCC---CCCeEEEEEEeCchhhHHHHc-CC
Confidence 4678888888999999999764 57999999999998643 489999874 357899999999999999974 44
Q ss_pred hcccCCcccCcceeEEEeCCCCC-CCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 008159 253 AELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 331 (575)
Q Consensus 253 ~~~~~~~~~~~g~~v~v~GPyG~-~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~ 331 (575)
+|+.+.|+||||. |..+....++++|||||+||||++||+++++++. ...++++|+|++|+.++
T Consensus 78 ----------~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~-----~~~~~v~L~~~~r~~~~ 142 (261)
T TIGR02911 78 ----------EGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP-----KEIKSLNLILGFKTPDD 142 (261)
T ss_pred ----------CCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHH
Confidence 6999999999998 5444335679999999999999999999987642 12368999999999999
Q ss_pred hhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHHHH
Q 008159 332 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILF 411 (575)
Q Consensus 332 l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~~~ 411 (575)
+.+.+++.++.. ..+ +.+.++++++.+.+..|++++..........+...+|+|||++ |++++++.+.+
T Consensus 143 ~~~~~eL~~l~~-----~~~--~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~~v~lCGp~~--mv~~~~~~L~~-- 211 (261)
T TIGR02911 143 ILFKEDIAEWKG-----NIN--LTLTLDEAEEDYKGNIGLVTKYIPELTLKDIEEVQAIVVGPPI--MMKFTVQELLK-- 211 (261)
T ss_pred hhHHHHHHHHHh-----cCc--EEEEEcCCCCCCcCCeeccCHhHHhccCCCccceEEEEECCHH--HHHHHHHHHHH--
Confidence 999999988642 122 3444444433344456777654322111122346799999999 99999988877
Q ss_pred HHHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 008159 412 VIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWR 477 (575)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~ 477 (575)
.|+ ..++++.. ++-.|.|+.|+||.|++.
T Consensus 212 ~Gv--~~~~i~~~-----------------------------------~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 212 KGI--KEENIWVS-----------------------------------YERKMCCGVGKCGHCKID 240 (261)
T ss_pred cCC--CHHHEEEE-----------------------------------eccceeccCcCCCCcccC
Confidence 444 22333221 112379999999999886
No 20
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.97 E-value=6.7e-30 Score=251.89 Aligned_cols=212 Identities=18% Similarity=0.282 Sum_probs=169.5
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC------CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCcc
Q 008159 173 ETCILSARVFPSKAIELILPKHAG------LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWT 244 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~------~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T 244 (575)
..+|++++.+++++++++++.+.+ +.|+||||+.|.+|.. ..+|||||+|.|. +++.++|+||. .|.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~-~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPN-WDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCC-CCCEEEEEEEEcCCCccc
Confidence 456889999999999999987654 7899999999999853 3689999999986 46789999997 48899
Q ss_pred HHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEE
Q 008159 245 SSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 324 (575)
Q Consensus 245 ~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~ 324 (575)
++|.+.++ +|+.+.|.||+|.+..+....++++|||||+||||+++|++++...+ ...+++|+|
T Consensus 80 ~~l~~~~~----------~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~------~~~~v~l~~ 143 (236)
T cd06210 80 TYLETRAK----------VGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG------EPQEARLFF 143 (236)
T ss_pred hhhhhCcC----------CCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC------CCceEEEEE
Confidence 99987565 79999999999998765445678999999999999999999988652 236899999
Q ss_pred EeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHH
Q 008159 325 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 404 (575)
Q Consensus 325 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~ 404 (575)
++|+.+++.+.+++.++.. ..+++++++.++++++.+.+..|.+.+..............+|+|||++ |++++.
T Consensus 144 ~~r~~~~~~~~~~l~~l~~----~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l~~~~~~~~vyicGp~~--m~~~~~ 217 (236)
T cd06210 144 GVNTEAELFYLDELKRLAD----SLPNLTVRICVWRPGGEWEGYRGTVVDALREDLASSDAKPDIYLCGPPG--MVDAAF 217 (236)
T ss_pred ecCCHHHhhhHHHHHHHHH----hCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhhcccCCCcEEEEeCCHH--HHHHHH
Confidence 9999999999999887643 2357888888887655455566666554332211222346789999999 999999
Q ss_pred HHHHH
Q 008159 405 GITSI 409 (575)
Q Consensus 405 ~~~~~ 409 (575)
+.+.+
T Consensus 218 ~~l~~ 222 (236)
T cd06210 218 AAARE 222 (236)
T ss_pred HHHHH
Confidence 98876
No 21
>PRK08051 fre FMN reductase; Validated
Probab=99.97 E-value=1e-29 Score=249.72 Aligned_cols=210 Identities=15% Similarity=0.122 Sum_probs=167.9
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCC--CccHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDG--EWTSSLYQM 250 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G--~~T~~L~~~ 250 (575)
..++.+++.+++++.++++..+..+.|+||||+.|+++.. ..|||||+|.|. +++.++|+||..+ ..+.++.+.
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~-~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPR-EKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCC-CCCcEEEEEEEcCCCcchHHHHHH
Confidence 4578888899999999999877778999999999998753 579999999985 5678999999844 467777776
Q ss_pred HHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 008159 251 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~ 330 (575)
++ +|+.|.|+||+|.+..+....+++||||||+||||++||+++++..+ ..++++|+|++|+.+
T Consensus 80 l~----------~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~------~~~~v~l~~g~r~~~ 143 (232)
T PRK08051 80 IL----------KDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG------PNRPITLYWGGREED 143 (232)
T ss_pred cC----------CCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC------CCCcEEEEEEeccHH
Confidence 66 79999999999998765445688999999999999999999998753 247899999999999
Q ss_pred hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHH-HH
Q 008159 331 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGIT-SI 409 (575)
Q Consensus 331 ~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~-~~ 409 (575)
++.+.+++.++... ..+++++..++++++.+.+..|++.+....... ......+|+|||++ |++++.+.+ .+
T Consensus 144 ~~~~~~el~~l~~~----~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~~-~~~~~~vyicGp~~--m~~~v~~~l~~~ 216 (232)
T PRK08051 144 HLYDLDELEALALK----HPNLHFVPVVEQPEEGWQGKTGTVLTAVMQDFG-SLAEYDIYIAGRFE--MAKIARELFCRE 216 (232)
T ss_pred HhhhhHHHHHHHHH----CCCcEEEEEeCCCCCCcccceeeehHHHHhhcc-CcccCEEEEECCHH--HHHHHHHHHHHH
Confidence 99999999876432 246788877777665555556776654432221 12345799999999 999999988 66
No 22
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.97 E-value=1.5e-29 Score=250.48 Aligned_cols=222 Identities=21% Similarity=0.284 Sum_probs=174.6
Q ss_pred HHHHHhhhhcc-----CceeEEEEEEecCCeEEEEEecCCC-CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEE
Q 008159 161 LDKLLRFIQSR-----PETCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMS 234 (575)
Q Consensus 161 ~dr~~R~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~ 234 (575)
.||++|.++.- ...+|++++.+++++.++++..+.. ..|+||||+.|.+|..+...+|||||+|.|..+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 47778876532 2467888889999999999987654 58999999999998666667899999998731367899
Q ss_pred EEEEeC--CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccC
Q 008159 235 LIVKCD--GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNR 312 (575)
Q Consensus 235 l~Ik~~--G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~ 312 (575)
|+||.. |.+|++|++.++ +|+++.|+||||.+.++...++++++||||+||||++|+++++...+
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~----------~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~--- 148 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLA----------PGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG--- 148 (243)
T ss_pred EEEEEcCCCcchhHHHhcCC----------CCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC---
Confidence 999996 999999987655 69999999999998765444789999999999999999999998652
Q ss_pred CCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEe
Q 008159 313 KYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVN 392 (575)
Q Consensus 313 ~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vc 392 (575)
..+++.++|++|+.+++.+.+++.++.. +..++++++++|++ +..|++++....+.....+...+|+|
T Consensus 149 ---~~~~i~l~~~~r~~~~~~~~~el~~l~~----~~~~~~~~~~~s~~-----~~~g~~~~~~l~~~~~~~~~~~vyvc 216 (243)
T cd06216 149 ---PTADVVLLYYARTREDVIFADELRALAA----QHPNLRLHLLYTRE-----ELDGRLSAAHLDAVVPDLADRQVYAC 216 (243)
T ss_pred ---CCCCEEEEEEcCChhhhHHHHHHHHHHH----hCCCeEEEEEEcCC-----ccCCCCCHHHHHHhccCcccCeEEEE
Confidence 2478999999999999999999877532 23568888888865 22355554433332222234689999
Q ss_pred cCCchHHHHHHHHHHHH
Q 008159 393 GLESLIWMAALVGITSI 409 (575)
Q Consensus 393 Gp~~~~~~~~v~~~~~~ 409 (575)
||++ |++++.+.+.+
T Consensus 217 Gp~~--m~~~~~~~l~~ 231 (243)
T cd06216 217 GPPG--FLDAAEELLEA 231 (243)
T ss_pred CCHH--HHHHHHHHHHH
Confidence 9999 99999998877
No 23
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.97 E-value=2e-29 Score=247.90 Aligned_cols=209 Identities=18% Similarity=0.316 Sum_probs=165.9
Q ss_pred EEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHHHHhc
Q 008159 177 LSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAE 254 (575)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~~~ 254 (575)
++++.++++++++++..+.++.|+||||+.|++|..+ ..|||||+|.|. +.+.++|+||.. |.+|++|++.++
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~~~~~vk~~~~G~~s~~l~~~~~-- 76 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLAN-ASGEWEFIIKRKPGGAASNALFDNLE-- 76 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCC-CCCEEEEEEEEcCCCcchHHHhhcCC--
Confidence 4667889999999998877788999999999998654 679999999886 457899999985 889999987655
Q ss_pred ccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhh
Q 008159 255 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 334 (575)
Q Consensus 255 ~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~ 334 (575)
+|+++.|+||||.+..+....+++||||||+||||+++|++++.... .....+++|+|++|+.+++.+
T Consensus 77 --------~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~----~~~~~~v~l~~~~r~~~~~~~ 144 (232)
T cd06190 77 --------PGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP----YLSDRPVDLFYGGRTPSDLCA 144 (232)
T ss_pred --------CCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc----cCCCCeEEEEEeecCHHHHhh
Confidence 69999999999998765445689999999999999999999998641 012478999999999999999
Q ss_pred HHhHHHHhhhccCCCceeEEEEEEeCCCCC----cchhhhhhchhhhhhhhcc-CCCceeEEecCCchHHHHHHHHHHHH
Q 008159 335 LNSISPLLSNQQSKKWHLTLKVFVTQEEQS----SVTVREVLNDLSLVRAVRF-GTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 335 ~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~----~~~~~g~~~~~~~~~~~~~-~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
.+++.++... ..++++++.+++++.. +.+.+|++++... +.... .+...+|+|||.+ |++++.+.+..
T Consensus 145 ~~el~~l~~~----~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~-~~~~~~~~~~~vyiCGp~~--m~~~v~~~l~~ 217 (232)
T cd06190 145 LDELSALVAL----GARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVE-ATLGDRLAEFEFYFAGPPP--MVDAVQRMLMI 217 (232)
T ss_pred HHHHHHHHHh----CCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHH-hhccCCccccEEEEECCHH--HHHHHHHHHHH
Confidence 9999876432 3567888888766432 3455677765432 22222 3457899999999 99999888766
No 24
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.97 E-value=1.5e-29 Score=262.01 Aligned_cols=217 Identities=17% Similarity=0.271 Sum_probs=174.3
Q ss_pred ceeEEEEEEecCCeEEEEEecC---CCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCccHHH
Q 008159 173 ETCILSARVFPSKAIELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSL 247 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~---~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~L 247 (575)
..+|++++.+++++.++++..+ +.+.|+||||+.|++|+.. .+|||||+|.|. +++.++|+||. .|.+|++|
T Consensus 108 ~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~L 184 (340)
T PRK11872 108 SGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPN-ATNQLQFLIRLLPDGVMSNYL 184 (340)
T ss_pred eEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCC-CCCeEEEEEEECCCCcchhhH
Confidence 4678899999999999999765 4678999999999998543 589999999986 56889999998 56688999
Q ss_pred HHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeC
Q 008159 248 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 327 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r 327 (575)
++.++ +|+.+.|+||||.|.++ ...++++|||||+||||++||++++...+ ..++++|+|++|
T Consensus 185 ~~~l~----------~G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r 247 (340)
T PRK11872 185 RERCQ----------VGDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG------CSPPVHLYYGVR 247 (340)
T ss_pred hhCCC----------CCCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC------CCCcEEEEEecC
Confidence 87666 79999999999999764 34579999999999999999999998752 236799999999
Q ss_pred CcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHH
Q 008159 328 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGIT 407 (575)
Q Consensus 328 ~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~ 407 (575)
+.+++.+.+++.++.. ...+++++..+++++..+.+..|++++......+ ......+|+|||++ |++++.+.+
T Consensus 248 ~~~dl~~~~el~~~~~----~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l-~~~~~~vy~CGp~~--mv~~~~~~L 320 (340)
T PRK11872 248 HAADLCELQRLAAYAE----RLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQL-RDQAFDMYLCGPPP--MVEAVKQWL 320 (340)
T ss_pred ChHHhccHHHHHHHHH----HCCCcEEEEEEeCCCCcCCCceeeccHHHHHhhc-CcCCCEEEEeCCHH--HHHHHHHHH
Confidence 9999999999987632 2357888888887766566677887765443222 11235699999999 999999998
Q ss_pred HHHHHHHHHHh
Q 008159 408 SILFVIFLISL 418 (575)
Q Consensus 408 ~~~~~~~~~~~ 418 (575)
.+ .|+....
T Consensus 321 ~~--~Gv~~~~ 329 (340)
T PRK11872 321 DE--QALENYR 329 (340)
T ss_pred HH--cCCCHHH
Confidence 87 5664433
No 25
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.97 E-value=2.4e-29 Score=247.78 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=172.5
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC--CcccCCeEEEEEeCC-CCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPS-ISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSL 247 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~-~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L 247 (575)
.++|++++.+++++.++++..+.. ..|+||||+.|++|. .+...+|||||+|.|. +++.++|+||.. |..|++|
T Consensus 3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~-~~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 3 VLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPT-QRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred eEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCC-CCCeEEEEEEEcCCCcchHHH
Confidence 467889999999999999988766 789999999999973 3444679999999986 557899999985 7789999
Q ss_pred HHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeC
Q 008159 248 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 327 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r 327 (575)
.+.++ +|+.+.|.||||.+..+....+++++||||+||||++++++++...+ ...+++++|++|
T Consensus 82 ~~~l~----------~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~------~~~~i~l~~~~r 145 (235)
T cd06217 82 HDEVK----------VGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG------WPVPFRLLYSAR 145 (235)
T ss_pred HhcCC----------CCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC------CCceEEEEEecC
Confidence 87655 69999999999998654334689999999999999999999998753 246899999999
Q ss_pred CcchhhhHHhHHHHhhhccCCCceeEEEEEEeCC-CCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHH
Q 008159 328 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQE-EQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGI 406 (575)
Q Consensus 328 ~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~ 406 (575)
+.+++.+.+++.++..+ .++++++..+|++ ++.+.+..|++++....+.....+...+|+|||++ |++++.+.
T Consensus 146 ~~~~~~~~~el~~~~~~----~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~v~icGp~~--m~~~v~~~ 219 (235)
T cd06217 146 TAEDVIFRDELEQLARR----HPNLHVTEALTRAAPADWLGPAGRITADLIAELVPPLAGRRVYVCGPPA--FVEAATRL 219 (235)
T ss_pred CHHHhhHHHHHHHHHHH----CCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCCccCCEEEEECCHH--HHHHHHHH
Confidence 99999999998775432 2468888888876 33344566777765543332223457899999999 99999998
Q ss_pred HHHHHHHH
Q 008159 407 TSILFVIF 414 (575)
Q Consensus 407 ~~~~~~~~ 414 (575)
+.. .|+
T Consensus 220 l~~--~Gv 225 (235)
T cd06217 220 LLE--LGV 225 (235)
T ss_pred HHH--cCC
Confidence 877 444
No 26
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.97 E-value=2e-29 Score=248.67 Aligned_cols=214 Identities=15% Similarity=0.200 Sum_probs=170.0
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC--CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 248 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~ 248 (575)
..+|++++.+++++.++++..+.+ ..|+||||+.|++|... .+|||||+|.|. +++.++|+||.. |..|++|+
T Consensus 8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPS-DAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCC-CCCEEEEEEEECCCCcchhhHh
Confidence 467889999999999999987654 48999999999998642 679999999986 567899999985 88999998
Q ss_pred HHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 249 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
+.++ +|+++.|.||+|.+.......+++++||||+||||++|++++++.++ ..++++|+|++|+
T Consensus 85 ~~l~----------~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~------~~~~v~l~~~~r~ 148 (238)
T cd06211 85 KQLK----------EGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG------DTRKITLFFGART 148 (238)
T ss_pred hcCC----------CCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC------CCCcEEEEEecCC
Confidence 7655 69999999999998765444589999999999999999999998753 2367999999999
Q ss_pred cchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCC--Ccchhhhhhchhhhhhhhc-cCCCceeEEecCCchHHHHHHHH
Q 008159 329 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVREVLNDLSLVRAVR-FGTQSNYAVNGLESLIWMAALVG 405 (575)
Q Consensus 329 ~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~vcGp~~~~~~~~v~~ 405 (575)
.+++.+.+++.++.. ...+++++..+++++. .+.+..|++++... +... ..+...+|+|||.+ |++++.+
T Consensus 149 ~~~~~~~~~l~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~l~-~~~~~~~~~~~vyvCGp~~--m~~~~~~ 221 (238)
T cd06211 149 RAELYYLDEFEALEK----DHPNFKYVPALSREPPESNWKGFTGFVHDAAK-KHFKNDFRGHKAYLCGPPP--MIDACIK 221 (238)
T ss_pred hhhhccHHHHHHHHH----hCCCeEEEEEECCCCCCcCcccccCcHHHHHH-HhcccccccCEEEEECCHH--HHHHHHH
Confidence 999999999887532 2346888888887642 23456677766432 2221 22346799999999 9999999
Q ss_pred HHHHHHHHH
Q 008159 406 ITSILFVIF 414 (575)
Q Consensus 406 ~~~~~~~~~ 414 (575)
.+.+ .|+
T Consensus 222 ~L~~--~Gv 228 (238)
T cd06211 222 TLMQ--GRL 228 (238)
T ss_pred HHHH--cCC
Confidence 9877 454
No 27
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.97 E-value=2.8e-29 Score=245.89 Aligned_cols=209 Identities=15% Similarity=0.293 Sum_probs=167.7
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 250 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 250 (575)
+.+|++++.++++++++++..++.+.|+||||+.|++|... .+|||||+|+|. +++.++|+||.. |.+|++|++.
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~ 78 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQ-GDGQLSFHIRKVPGGAFSGWLFGA 78 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCC-CCCEEEEEEEECCCCcchHHHHhc
Confidence 35688899999999999998877788999999999998643 689999999986 467899999984 8899999887
Q ss_pred HHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 008159 251 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~ 330 (575)
++ +|+++.|+||+|.+..+ ...+++|||||||||||+++|++++...+ ..++++++|++|+.+
T Consensus 79 l~----------~G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~------~~~~i~l~~~~r~~~ 141 (227)
T cd06213 79 DR----------TGERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG------TKRDVTLLFGARTQR 141 (227)
T ss_pred CC----------CCCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC------CCCcEEEEEeeCCHH
Confidence 66 69999999999998754 34579999999999999999999998753 236799999999999
Q ss_pred hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCC--CcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHH
Q 008159 331 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITS 408 (575)
Q Consensus 331 ~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~ 408 (575)
++.+.+++.++.... ..++++..++++++. .+.+..|++++... +.. .+...+|+|||.+ |++++.+.+.
T Consensus 142 ~~~~~~~l~~l~~~~---~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~-~~~--~~~~~v~~CGp~~--~~~~~~~~l~ 213 (227)
T cd06213 142 DLYALDEIAAIAARW---RGRFRFIPVLSEEPADSSWKGARGLVTEHIA-EVL--LAATEAYLCGPPA--MIDAAIAVLR 213 (227)
T ss_pred HhccHHHHHHHHHhc---cCCeEEEEEecCCCCCCCccCCcccHHHHHH-hhc--cCCCEEEEECCHH--HHHHHHHHHH
Confidence 999999888754221 256788878887642 23445566655332 211 3457899999999 9999998887
Q ss_pred H
Q 008159 409 I 409 (575)
Q Consensus 409 ~ 409 (575)
+
T Consensus 214 ~ 214 (227)
T cd06213 214 A 214 (227)
T ss_pred H
Confidence 6
No 28
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.97 E-value=2.6e-30 Score=254.03 Aligned_cols=187 Identities=22% Similarity=0.309 Sum_probs=147.1
Q ss_pred eeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHHh
Q 008159 174 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 253 (575)
Q Consensus 174 ~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~ 253 (575)
+++++++.+++++.+++++.+ ..|+||||+.|++|.. ..|||||+|.| +.++|+||..|.+|++|++ ++
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~-l~- 69 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHD-LK- 69 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHh-cC-
Confidence 357888999999999999864 5899999999999864 35999999986 5899999999999999986 55
Q ss_pred cccCCcccCcceeEEEeCCCCC-CCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 008159 254 ELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 332 (575)
Q Consensus 254 ~~~~~~~~~~g~~v~v~GPyG~-~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l 332 (575)
+|+.+.+.||+|. +..+ .+++++||||+||||++||++++... ++++++|++|+.+++
T Consensus 70 ---------~Gd~v~i~gP~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~---------~~i~l~~~~r~~~d~ 128 (233)
T cd06220 70 ---------EGDKLGIRGPYGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA---------ADVTVLLGARTKEEL 128 (233)
T ss_pred ---------CCCEEEEECcCCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc---------CCEEEEEecCChHHC
Confidence 6999999999998 4332 68999999999999999999998752 679999999999999
Q ss_pred hhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 333 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 333 ~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
.+.+++.+. .+ +.+ .+ +++ +.+..|++++.... .. ..+...+|+|||++ |++++.+.+..
T Consensus 129 ~~~~eL~~~--------~~--~~~-~~-~~~-~~~~~g~~~~~l~~-~~-~~~~~~vyicGp~~--m~~~~~~~L~~ 188 (233)
T cd06220 129 LFLDRLRKS--------DE--LIV-TT-DDG-SYGFKGFVTDLLKE-LD-LEEYDAIYVCGPEI--MMYKVLEILDE 188 (233)
T ss_pred hhHHHHhhC--------Cc--EEE-EE-eCC-CCcccceehHHHhh-hc-ccCCCEEEEECCHH--HHHHHHHHHHh
Confidence 999888751 11 222 22 222 33345666654322 11 22335799999999 99999988766
No 29
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.97 E-value=1.3e-29 Score=256.37 Aligned_cols=216 Identities=15% Similarity=0.244 Sum_probs=169.8
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC--CcccCCeEEEEEeCCC-----------------------------CCCccccCc
Q 008159 173 ETCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSI-----------------------------SKFQWHSFS 221 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~-----------------------------~~~~~hpfS 221 (575)
..+|++++.+++++.++++..+.+ +.|+||||+.|.+|.. +....||||
T Consensus 11 ~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 90 (283)
T cd06188 11 ECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYS 90 (283)
T ss_pred EEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccC
Confidence 467888888999999999987754 7899999999999853 223469999
Q ss_pred cccCCCCCCCcEEEEEEe-----------CCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEE
Q 008159 222 ITSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVA 290 (575)
Q Consensus 222 I~s~p~~~~~~l~l~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIa 290 (575)
|+|.|. +++.++|+||. .|..|++|++ ++ +|+++.|.||+|.+.++ ...+++||||
T Consensus 91 ias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~i~gP~G~f~l~-~~~~~~vlIA 157 (283)
T cd06188 91 LANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-LK----------PGDKVTASGPFGEFFIK-DTDREMVFIG 157 (283)
T ss_pred cCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhc-CC----------CCCEEEEECcccccccc-CCCCcEEEEE
Confidence 999986 56789999996 6788999987 55 69999999999999765 3567999999
Q ss_pred eCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCC--CCcchh
Q 008159 291 GGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTV 368 (575)
Q Consensus 291 gGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~--~~~~~~ 368 (575)
|||||||++||+++++..+. ..++++|+|++|+.+++.+.+++.++.. ..+++++++.+|+++ ..+.+.
T Consensus 158 gGtGItP~~s~l~~~~~~~~-----~~~~v~l~~g~r~~~d~~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~~~ 228 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLK-----SKRKISFWYGARSLKELFYQEEFEALEK----EFPNFKYHPVLSEPQPEDNWDGY 228 (283)
T ss_pred ecccHhHHHHHHHHHHhcCC-----CCceEEEEEecCCHHHhhHHHHHHHHHH----HCCCeEEEEEECCCCccCCCCCc
Confidence 99999999999999876421 1368999999999999999999987643 235678887788754 334456
Q ss_pred hhhhchhhhhhhhcc---CCCceeEEecCCchHHHHHHHHHHHHHHHHH
Q 008159 369 REVLNDLSLVRAVRF---GTQSNYAVNGLESLIWMAALVGITSILFVIF 414 (575)
Q Consensus 369 ~g~~~~~~~~~~~~~---~~~~~~~vcGp~~~~~~~~v~~~~~~~~~~~ 414 (575)
+|++++......+.. .....+|+|||++ ||+++.+.+.. .|+
T Consensus 229 ~G~v~~~~~~~~~~~~~~~~~~~vyiCGP~~--m~~~~~~~l~~--~Gv 273 (283)
T cd06188 229 TGFIHQVLLENYLKKHPAPEDIEFYLCGPPP--MNSAVIKMLDD--LGV 273 (283)
T ss_pred ceeecHHHHHHHhccCCCCCCeEEEEECCHH--HHHHHHHHHHH--cCC
Confidence 777776554333211 2235799999999 99999998877 555
No 30
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.97 E-value=2.4e-29 Score=247.12 Aligned_cols=211 Identities=19% Similarity=0.208 Sum_probs=165.7
Q ss_pred eEEEEEEecCCeEEEEEecCCC--CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHH
Q 008159 175 CILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 250 (575)
Q Consensus 175 ~v~~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 250 (575)
+|++++.+++++.++++..+.. +.|+||||+.|+++..+...+|||||+|.|. ++.++|.||.. |.+|++|++.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence 4678888999999999986543 6899999999999766666789999999874 57899999985 8899999876
Q ss_pred HHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 008159 251 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~ 330 (575)
++ +|+++.|+||||.+..+....++++|||||+||||++||++++.... ..++++++|++|+.+
T Consensus 80 ~~----------~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~------~~~~v~l~~~~r~~~ 143 (231)
T cd06191 80 IQ----------PGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA------PESDFTLIHSARTPA 143 (231)
T ss_pred CC----------CCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEecCCHH
Confidence 65 79999999999998765445689999999999999999999988652 247899999999999
Q ss_pred hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCC--cchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHH
Q 008159 331 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS--SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITS 408 (575)
Q Consensus 331 ~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~ 408 (575)
++.+.+++.++.. +..++++++++|+++.. +.+..+.+.+..............+|+|||.+ |++++.+.+.
T Consensus 144 ~~~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp~~--mv~~~~~~l~ 217 (231)
T cd06191 144 DMIFAQELRELAD----KPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGPAG--MMDAVETALK 217 (231)
T ss_pred HHhHHHHHHHHHH----hCCCeEEEEEECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECCHH--HHHHHHHHHH
Confidence 9999999887632 23578899899986532 22333444332221211122246799999999 9999999887
Q ss_pred H
Q 008159 409 I 409 (575)
Q Consensus 409 ~ 409 (575)
+
T Consensus 218 ~ 218 (231)
T cd06191 218 E 218 (231)
T ss_pred H
Confidence 6
No 31
>PRK05802 hypothetical protein; Provisional
Probab=99.96 E-value=5.5e-30 Score=261.40 Aligned_cols=201 Identities=14% Similarity=0.180 Sum_probs=152.4
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC---CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQ 249 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~ 249 (575)
..+|++++.+++++.++++..|.. ..++|||||+|++|..+.+..|||||+++|. +++.++|+||..|..|++|.
T Consensus 66 ~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~~G~~T~~L~- 143 (320)
T PRK05802 66 ECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEIRGVKTKKIA- 143 (320)
T ss_pred eEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEecChhHHHHh-
Confidence 467899999999999999987643 3579999999999876666789999999986 57889999999999999997
Q ss_pred HHHhcccCCcccCcceeEEEeCCCCC--CCCC---cCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEE
Q 008159 250 MIHAELDSDADQMRCIPVAIEGPYGP--ATMD---FLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 324 (575)
Q Consensus 250 ~~~~~~~~~~~~~~g~~v~v~GPyG~--~~~~---~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~ 324 (575)
.++ +|+.+.|.||||+ |... ....+++|+|||||||||++++++++.+++ .+++++|
T Consensus 144 ~l~----------~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~--------~~v~li~ 205 (320)
T PRK05802 144 KLN----------KGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG--------NKIIVII 205 (320)
T ss_pred cCC----------CCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC--------CcEEEEE
Confidence 444 6999999999965 4332 123568999999999999999999998752 5799999
Q ss_pred EeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCC-cchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHH
Q 008159 325 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 403 (575)
Q Consensus 325 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v 403 (575)
++|+.+++.+.+++.++.. ++....+.+++. ....+|.+.+... ..+.+.+|+|||++ ||+++
T Consensus 206 g~r~~~~~~~~~el~~~~~---------~~~~~~~~ddG~~~~~~~g~v~~~l~-----~~~~~~vy~CGP~~--M~k~v 269 (320)
T PRK05802 206 DKGPFKNNFIKEYLELYNI---------EIIELNLLDDGELSEEGKDILKEIIK-----KEDINLIHCGGSDI--LHYKI 269 (320)
T ss_pred eCCCHHHHHHHHHHHHhhC---------ceEEEEecccCCCCccccchHHHHhc-----CCCCCEEEEECCHH--HHHHH
Confidence 9999999999888876421 122221112321 1223455554432 11236799999999 99999
Q ss_pred HHHHHH
Q 008159 404 VGITSI 409 (575)
Q Consensus 404 ~~~~~~ 409 (575)
.+.+..
T Consensus 270 ~~~l~~ 275 (320)
T PRK05802 270 IEYLDK 275 (320)
T ss_pred HHHHhh
Confidence 877654
No 32
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.96 E-value=3.9e-29 Score=259.57 Aligned_cols=217 Identities=14% Similarity=0.134 Sum_probs=171.1
Q ss_pred CceeEEEEEEecCCeEEEEEecC--CCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCccHHH
Q 008159 172 PETCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSL 247 (575)
Q Consensus 172 ~~~~v~~~~~~~~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~L 247 (575)
.+.+|++++.++++++++++..| ..+.|+||||+.|.+|.. .+|||||+|.|. +++.++|+||. .|.+|++|
T Consensus 103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPH-SGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCC-CCCEEEEEEEecCCCccHHHH
Confidence 35678899999999999999765 357899999999999853 579999999986 45789999997 58889999
Q ss_pred HHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeC
Q 008159 248 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 327 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r 327 (575)
++.++ +|+.+.++||||.+.++....+++||||||+||||++||+++++..+ ..++++|+|++|
T Consensus 179 ~~~l~----------~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~------~~~~i~l~~g~r 242 (339)
T PRK07609 179 FGALK----------ERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG------IQRPVTLYWGAR 242 (339)
T ss_pred HHhcc----------CCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEecC
Confidence 98776 79999999999999765446689999999999999999999998753 246799999999
Q ss_pred CcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCC--CCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHH
Q 008159 328 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVG 405 (575)
Q Consensus 328 ~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~ 405 (575)
+.+++.+.+++.++.. +.+++++++.+++++ +.+.+.+|++++....... ......+|+|||.+ ||+++..
T Consensus 243 ~~~dl~~~e~l~~~~~----~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~~-~~~~~~vy~CGp~~--m~~~~~~ 315 (339)
T PRK07609 243 RPEDLYLSALAEQWAE----ELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLEDFP-DLSGHQVYACGSPV--MVYAARD 315 (339)
T ss_pred ChHHhccHHHHHHHHH----hCCCeEEEEEecCCCCCCCccCccCcHHHHHHhhcc-cccCCEEEEECCHH--HHHHHHH
Confidence 9999877766665432 235688888888753 3344566777765433221 12346799999999 9999999
Q ss_pred HHHHHHHHHHHH
Q 008159 406 ITSILFVIFLIS 417 (575)
Q Consensus 406 ~~~~~~~~~~~~ 417 (575)
.+.+ .|+...
T Consensus 316 ~l~~--~G~~~~ 325 (339)
T PRK07609 316 DFVA--AGLPAE 325 (339)
T ss_pred HHHH--cCCCHH
Confidence 9877 555333
No 33
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.96 E-value=6.9e-29 Score=244.01 Aligned_cols=214 Identities=19% Similarity=0.304 Sum_probs=168.4
Q ss_pred ceeEEEEEEecCCeEEEEEecCC--CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 248 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~--~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~ 248 (575)
.++|++++.+++++.++++..+. .+.|+||||+.|++|+.+ .+|||||+|.|. +++.++|+||.. |.+|++|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~vk~~~~G~~s~~l~ 78 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPA-DPGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCC-CCCEEEEEEEECCCCchhhHHh
Confidence 35688899999999998887543 578999999999998643 789999999986 457899999984 78899998
Q ss_pred HHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 249 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
+.++ +|+++.+.||+|.+......+++++|||||+||||+++|++++...+ ..++++|+|++|+
T Consensus 79 ~~l~----------~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~ 142 (232)
T cd06212 79 DGLA----------VGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG------SDRPVRFFYGART 142 (232)
T ss_pred hcCC----------CCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC------CCCcEEEEEeccc
Confidence 7655 69999999999998765445789999999999999999999998753 2367999999999
Q ss_pred cchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCC--CcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHH
Q 008159 329 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGI 406 (575)
Q Consensus 329 ~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~ 406 (575)
.+++.+.+++.++..+ ..++++..++++++. .+.+..|++++... +.....+...+|+|||++ ||+++...
T Consensus 143 ~~~~~~~~~l~~l~~~----~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~v~~CGp~~--~~~~v~~~ 215 (232)
T cd06212 143 ARDLFYLEEIAALGEK----IPDFTFIPALSESPDDEGWSGETGLVTEVVQ-RNEATLAGCDVYLCGPPP--MIDAALPV 215 (232)
T ss_pred hHHhccHHHHHHHHHh----CCCEEEEEEECCCCCCCCCcCCcccHHHHHH-hhccCccCCEEEEECCHH--HHHHHHHH
Confidence 9999999998776432 356788878887642 23345566665332 222122346799999999 99999999
Q ss_pred HHHHHHHH
Q 008159 407 TSILFVIF 414 (575)
Q Consensus 407 ~~~~~~~~ 414 (575)
+.+ .|+
T Consensus 216 l~~--~G~ 221 (232)
T cd06212 216 LEM--SGV 221 (232)
T ss_pred HHH--cCC
Confidence 887 444
No 34
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.96 E-value=6.3e-29 Score=245.67 Aligned_cols=209 Identities=18% Similarity=0.297 Sum_probs=167.3
Q ss_pred EEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCC-CCCccccCccccCCCCCCCcEEEEEEe--CCCccHHHHHHHH
Q 008159 176 ILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQMIH 252 (575)
Q Consensus 176 v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~-~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~L~~~~~ 252 (575)
|++++.+++++++++++.+..+.|+||||+.|++|.. +...+|||||+|.|. ++.++|+||+ .|.+|++|++ ++
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~--~~~i~~~i~~~~~G~~s~~l~~-l~ 78 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY--EENLEFYIILVPDGPLTPRLFK-LK 78 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCC--CCeEEEEEEEecCCCCchHHhc-CC
Confidence 6788889999999999887778899999999999876 667889999999884 4789999997 4999999974 44
Q ss_pred hcccCCcccCcceeEEEe-CCCCCCCCCcC-CCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 008159 253 AELDSDADQMRCIPVAIE-GPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 330 (575)
Q Consensus 253 ~~~~~~~~~~~g~~v~v~-GPyG~~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~ 330 (575)
+|+.+.+. ||+|.|..+.. ..++++|||||+||||+++|++++.... ..++++|+|++|+.+
T Consensus 79 ----------~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~ 142 (241)
T cd06195 79 ----------PGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE------RFDKIVLVHGVRYAE 142 (241)
T ss_pred ----------CCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC------CCCcEEEEEccCCHH
Confidence 69999999 99999876544 4689999999999999999999998542 247899999999999
Q ss_pred hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhh----hhhcc---CCCceeEEecCCchHHHHHH
Q 008159 331 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLV----RAVRF---GTQSNYAVNGLESLIWMAAL 403 (575)
Q Consensus 331 ~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~----~~~~~---~~~~~~~vcGp~~~~~~~~v 403 (575)
++.+.+++.++..+ ...++++++++++++..+ +..|++++.... +.+.. .+...+|+|||.+ |++++
T Consensus 143 d~~~~~el~~l~~~---~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~--m~~~~ 216 (241)
T cd06195 143 ELAYQDEIEALAKQ---YNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQ--MIDDT 216 (241)
T ss_pred HhhhHHHHHHHHhh---cCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHH--HHHHH
Confidence 99999999886432 135788888899876643 445666553321 11111 1346799999999 99999
Q ss_pred HHHHHH
Q 008159 404 VGITSI 409 (575)
Q Consensus 404 ~~~~~~ 409 (575)
.+.+.+
T Consensus 217 ~~~l~~ 222 (241)
T cd06195 217 QELLKE 222 (241)
T ss_pred HHHHHH
Confidence 988776
No 35
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.96 E-value=8.8e-29 Score=241.92 Aligned_cols=209 Identities=18% Similarity=0.275 Sum_probs=167.5
Q ss_pred EEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHHHHh
Q 008159 176 ILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHA 253 (575)
Q Consensus 176 v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~~ 253 (575)
|++++.++++++++++..+..+.|+||||+.|.+|..+. .+|||||+|.|. +.+.++|+||.. |.+|++|.+.++
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~l~- 77 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPN-EDGEIEFHVRAVPGGRVSNALHDELK- 77 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCC-CCCEEEEEEEeCCCCcchHHHhhcCc-
Confidence 356778899999999988777899999999999986543 689999999886 457899999986 999999988665
Q ss_pred cccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhh
Q 008159 254 ELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEIC 333 (575)
Q Consensus 254 ~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~ 333 (575)
+|+.+.|.||+|.+..+...++++++||||+||||++||++++...+ ...++.++|++|+.+++.
T Consensus 78 ---------~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------~~~~v~l~~~~~~~~~~~ 142 (224)
T cd06187 78 ---------VGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------EPRPVHLFFGARTERDLY 142 (224)
T ss_pred ---------cCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhhc
Confidence 69999999999998765444789999999999999999999998752 246899999999999999
Q ss_pred hHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 334 LLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 334 ~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
+.+++.++.. ...+++++++++++++.+.+.+|++.+..... ........+|+|||.+ |++++.+.+..
T Consensus 143 ~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~v~vcGp~~--~~~~v~~~l~~ 211 (224)
T cd06187 143 DLEGLLALAA----RHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRD-GPDWADHDIYICGPPA--MVDATVDALLA 211 (224)
T ss_pred ChHHHHHHHH----hCCCeEEEEEeCCCCCccCCCcccHHHHHHHh-ccccccCEEEEECCHH--HHHHHHHHHHH
Confidence 9999887532 23567888788876544445566666544322 1112346799999999 99999988876
No 36
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.96 E-value=1.1e-28 Score=241.84 Aligned_cols=211 Identities=18% Similarity=0.304 Sum_probs=168.8
Q ss_pred ceeEEEEEEecCCeEEEEEecCC--CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCccHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLY 248 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~--~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~L~ 248 (575)
..+|++++.+++++++++++.+. .+.|+||||+.|++|... .+|||||+|.|. ++.++|+||. .|..|++|+
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~--~~~i~~~i~~~~~G~~s~~l~ 78 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPG--DPRLEFLIRLLPGGAMSSYLR 78 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCC--CCeEEEEEEEcCCCcchhhHH
Confidence 35688999999999999998775 678999999999998543 689999999885 3789999998 488999998
Q ss_pred HHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 249 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
+.++ +|+.+.|.||+|.+..+ ...++++|||||+||||++|+++++...+ ...+++|+|++|+
T Consensus 79 ~~l~----------~G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~ 141 (228)
T cd06209 79 DRAQ----------PGDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTR 141 (228)
T ss_pred hccC----------CCCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCC
Confidence 8665 69999999999998654 24478999999999999999999998753 2468999999999
Q ss_pred cchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHH
Q 008159 329 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITS 408 (575)
Q Consensus 329 ~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~ 408 (575)
.+++.+.+++.++... .+++++++++++++. +.+..|++++....... ...+..+|+|||.+ ||+++.+.+.
T Consensus 142 ~~~~~~~~~l~~l~~~----~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~-~~~~~~v~icGp~~--m~~~~~~~l~ 213 (228)
T cd06209 142 DADLVELDRLEALAER----LPGFSFRTVVADPDS-WHPRKGYVTDHLEAEDL-NDGDVDVYLCGPPP--MVDAVRSWLD 213 (228)
T ss_pred HHHhccHHHHHHHHHh----CCCeEEEEEEcCCCc-cCCCcCCccHHHHHhhc-cCCCcEEEEeCCHH--HHHHHHHHHH
Confidence 9999999998876432 357888888988655 44455667654432211 12345799999999 9999999987
Q ss_pred HHHHHH
Q 008159 409 ILFVIF 414 (575)
Q Consensus 409 ~~~~~~ 414 (575)
+ .|+
T Consensus 214 ~--~G~ 217 (228)
T cd06209 214 E--QGI 217 (228)
T ss_pred H--cCC
Confidence 7 454
No 37
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.96 E-value=1e-28 Score=245.16 Aligned_cols=216 Identities=17% Similarity=0.215 Sum_probs=171.8
Q ss_pred CceeEEEEEEecCCeEEEEEecCCC---CcccCCeEEEEEeCCCC--CCccccCccccCCCCCCCcEEEEEEeC--CCcc
Q 008159 172 PETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCD--GEWT 244 (575)
Q Consensus 172 ~~~~v~~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~~--~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T 244 (575)
+..+|++++.+++++.++++..+.. +.|+||||+.|.++..+ ...+|||||+|.|. ++.++|+||.. |..|
T Consensus 7 ~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~l~~~ik~~~~G~~s 84 (247)
T cd06184 7 RPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN--GDYYRISVKREPGGLVS 84 (247)
T ss_pred EEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC--CCeEEEEEEEcCCCcch
Confidence 4567889999999999999987643 68999999999997543 45789999999984 35899999986 9999
Q ss_pred HHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEE
Q 008159 245 SSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 324 (575)
Q Consensus 245 ~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~ 324 (575)
++|.+.++ +|+++.|.||||.+..+...+++++|||||+||||++++++++.... ..++++|+|
T Consensus 85 ~~l~~~~~----------~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~------~~~~i~l~~ 148 (247)
T cd06184 85 NYLHDNVK----------VGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG------PGRPVTFIH 148 (247)
T ss_pred HHHHhcCC----------CCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC------CCCcEEEEE
Confidence 99987555 69999999999998765446789999999999999999999998742 247899999
Q ss_pred EeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCc----chhhhhhchhhhhhhhccCCCceeEEecCCchHHH
Q 008159 325 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS----VTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWM 400 (575)
Q Consensus 325 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~ 400 (575)
++|+.+++.|.+++.++..+ ..+++++++++++...+ ....|+++.....+. ...+...+|+|||.+ |+
T Consensus 149 ~~r~~~~~~~~~~l~~l~~~----~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~v~icGp~~--m~ 221 (247)
T cd06184 149 AARNSAVHAFRDELEELAAR----LPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLREL-LLPADADFYLCGPVP--FM 221 (247)
T ss_pred EcCchhhHHHHHHHHHHHhh----CCCeEEEEEECCCCcccccccccccCccCHHHHhhc-cCCCCCEEEEECCHH--HH
Confidence 99999999999998876432 35788888888765432 234566665443221 123457899999999 99
Q ss_pred HHHHHHHHHHHHHH
Q 008159 401 AALVGITSILFVIF 414 (575)
Q Consensus 401 ~~v~~~~~~~~~~~ 414 (575)
+++...+.+ .|+
T Consensus 222 ~~v~~~l~~--~G~ 233 (247)
T cd06184 222 QAVREGLKA--LGV 233 (247)
T ss_pred HHHHHHHHH--cCC
Confidence 999999877 555
No 38
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.96 E-value=7.1e-29 Score=242.21 Aligned_cols=208 Identities=19% Similarity=0.306 Sum_probs=164.7
Q ss_pred EEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHHHHhcc
Q 008159 178 SARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAEL 255 (575)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~~~~ 255 (575)
+++.+++++.++++..+....|+||||+.|.+|..+...+|||||+|.|. +++.++|+||.. |.+|++|.+. +
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~~~l~vk~~~~G~~s~~l~~~-~--- 76 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPD-EEGELELTVKIVPGGPFSAWLHDL-K--- 76 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCC-CCCeEEEEEEEeCCCchhhHHhcC-C---
Confidence 34567789999999887778899999999999976667899999999985 457899999996 9999999865 3
Q ss_pred cCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhH
Q 008159 256 DSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLL 335 (575)
Q Consensus 256 ~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~ 335 (575)
+|+++.+.||+|.+......++++++||||+||||++||++++.... ...+++++|++|+.+++.+.
T Consensus 77 -------~G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~ 143 (223)
T cd00322 77 -------PGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFL 143 (223)
T ss_pred -------CCCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHH
Confidence 69999999999998655557789999999999999999999998752 24789999999999999999
Q ss_pred HhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhch-hhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 336 NSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLND-LSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 336 ~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
+++.++.. ...++++++++++++....+..+.+.. ..........+...+|+|||++ |++++.+.+..
T Consensus 144 ~el~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~--m~~~~~~~L~~ 212 (223)
T cd00322 144 DELEELAK----EGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPPA--MAKAVREALVS 212 (223)
T ss_pred HHHHHHHH----hCCCeEEEEEecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCHH--HHHHHHHHHHH
Confidence 99987643 235788888888776544333333321 1111111223457899999999 99999988776
No 39
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.96 E-value=3.4e-28 Score=235.36 Aligned_cols=192 Identities=28% Similarity=0.517 Sum_probs=146.9
Q ss_pred EEEEEec-CCeEEEEEecCCCCcccCCeEEEEEeCCC-CCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHHhc
Q 008159 177 LSARVFP-SKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAE 254 (575)
Q Consensus 177 ~~~~~~~-~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~-~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~~ 254 (575)
++++.++ +++++++++.+..+.|+||||++|++|.. +.+++|||||+|+|..+++.++|+||..+++|+++.+.+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4567788 99999999998889999999999999987 788999999999985225899999999745556666655411
Q ss_pred ccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhh
Q 008159 255 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 334 (575)
Q Consensus 255 ~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~ 334 (575)
.+...++++.++||||.+..+...++++||||||+||||++|+++++..+..+ ....++++|+|++|+.+++.|
T Consensus 82 ----~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~ 155 (210)
T cd06186 82 ----PGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEW 155 (210)
T ss_pred ----cCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHH
Confidence 11225788999999999864556789999999999999999999999875311 113578999999999999654
Q ss_pred -HHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHH
Q 008159 335 -LNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITS 408 (575)
Q Consensus 335 -~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~ 408 (575)
.+++.+ ..+.. . .. ++++|+|+ +++|||.+ |++.+.....
T Consensus 156 ~~~~l~~-~~~~~-~-~~-~~~i~~T~----------------------------v~~CGp~~--~~~~~~~~~~ 196 (210)
T cd06186 156 FLDELRA-AQELE-V-DG-EIEIYVTR----------------------------VVVCGPPG--LVDDVRNAVA 196 (210)
T ss_pred HHHHHHh-hhhcc-C-Cc-eEEEEEee----------------------------EEEECchh--hccHHHHHHh
Confidence 455542 00111 1 11 67888886 69999988 9888876643
No 40
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.96 E-value=1.6e-28 Score=238.99 Aligned_cols=202 Identities=23% Similarity=0.319 Sum_probs=160.8
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCC-CCccccCccccCCCCCCCcEEEEEEeC---CCccHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSIS-KFQWHSFSITSSSSVDDQTMSLIVKCD---GEWTSSLY 248 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~-~~~~hpfSI~s~p~~~~~~l~l~Ik~~---G~~T~~L~ 248 (575)
+++|++++.++++++++++..+..+.|+||||+.|.++..+ +.++|||||+|.|. ++.++|+||.. |..|++|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~~~g~~s~~l~ 79 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYPDHDGVTEQLG 79 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcCCCCcHhHHHH
Confidence 45788999999999999999888889999999999997654 34789999999984 47899999983 77899886
Q ss_pred HHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 249 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
+ ++ +|+.+.+.||||.+.. .+++||||||+||||++||++++...+ ..++++|+|++|+
T Consensus 80 ~-l~----------~G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~ 138 (218)
T cd06196 80 R-LQ----------PGDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG------KLEGNTLIFANKT 138 (218)
T ss_pred h-CC----------CCCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC------CCceEEEEEecCC
Confidence 4 44 6999999999999753 267999999999999999999998742 2367999999999
Q ss_pred cchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHH
Q 008159 329 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITS 408 (575)
Q Consensus 329 ~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~ 408 (575)
.+++.+.+++.++ .++++..++|+++.. .+..|++++....+.. ......+|+|||++ |++++.+.+.
T Consensus 139 ~~~~~~~~el~~l--------~~~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~-~~~~~~vyiCGp~~--m~~~~~~~l~ 206 (218)
T cd06196 139 EKDIILKDELEKM--------LGLKFINVVTDEKDP-GYAHGRIDKAFLKQHV-TDFNQHFYVCGPPP--MEEAINGALK 206 (218)
T ss_pred HHHHhhHHHHHHh--------hcceEEEEEcCCCCC-CeeeeEECHHHHHHhc-CCCCCEEEEECCHH--HHHHHHHHHH
Confidence 9999999998875 134566677775432 2346777654433322 12236799999999 9999998887
Q ss_pred H
Q 008159 409 I 409 (575)
Q Consensus 409 ~ 409 (575)
.
T Consensus 207 ~ 207 (218)
T cd06196 207 E 207 (218)
T ss_pred H
Confidence 6
No 41
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.96 E-value=1.6e-28 Score=239.83 Aligned_cols=207 Identities=15% Similarity=0.195 Sum_probs=161.9
Q ss_pred EEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHHHHHh
Q 008159 176 ILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHA 253 (575)
Q Consensus 176 v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~~ 253 (575)
|++++.+++++++++++.+..+.|+||||+.|++|.. ..|||||+|.|. +++.++|+||.. |.+|++|.+.++
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~~~- 75 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPD-GDNELEFHIRRKPNGAFSGWLGEEAR- 75 (222)
T ss_pred CceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCC-CCCEEEEEEEeccCCccchHHHhccC-
Confidence 3567788999999999988788999999999999863 569999999986 457899999984 889999988665
Q ss_pred cccCCcccCcceeEEEeCCCCCCCCCc-CCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 008159 254 ELDSDADQMRCIPVAIEGPYGPATMDF-LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 332 (575)
Q Consensus 254 ~~~~~~~~~~g~~v~v~GPyG~~~~~~-~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l 332 (575)
+|+.+.|.||+|.+.... ...+++++||||+||||+++++++++..+ ..++++++|++|+.+++
T Consensus 76 ---------~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~ 140 (222)
T cd06194 76 ---------PGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG------HQGEIRLVHGARDPDDL 140 (222)
T ss_pred ---------CCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC------CCccEEEEEecCChhhc
Confidence 699999999999986543 45689999999999999999999988653 24789999999999999
Q ss_pred hhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcch-hhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHHHH
Q 008159 333 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVT-VREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILF 411 (575)
Q Consensus 333 ~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~~~ 411 (575)
.+.+++.++.. ...+++++.++++++..... ..+.+.+. .....+...+|+|||.+ ||+++.+.+..
T Consensus 141 ~~~~el~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~vyicGp~~--m~~~~~~~L~~-- 208 (222)
T cd06194 141 YLHPALLWLAR----EHPNFRYIPCVSEGSQGDPRVRAGRIAAH----LPPLTRDDVVYLCGAPS--MVNAVRRRAFL-- 208 (222)
T ss_pred cCHHHHHHHHH----HCCCeEEEEEEccCCCCCcccccchhhhh----hccccCCCEEEEeCCHH--HHHHHHHHHHH--
Confidence 99999887632 23568888888876543211 11222111 11223357899999999 99999999877
Q ss_pred HHH
Q 008159 412 VIF 414 (575)
Q Consensus 412 ~~~ 414 (575)
.|+
T Consensus 209 ~Gv 211 (222)
T cd06194 209 AGA 211 (222)
T ss_pred cCC
Confidence 455
No 42
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.96 E-value=3.3e-28 Score=236.50 Aligned_cols=195 Identities=23% Similarity=0.355 Sum_probs=151.5
Q ss_pred CCeEEEEEecCCC-CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHHhcccCCcccC
Q 008159 184 SKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQM 262 (575)
Q Consensus 184 ~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~~~~~~~~~~ 262 (575)
.+++++++..+.+ +.|+|||||.|++|..+..++|||||+|.|. +++.++|+||..|.+|++|.+.++
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~l~l~vk~~G~~t~~l~~~l~---------- 75 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPD-PDGRLRFTIKALGDYTRRLAERLK---------- 75 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCC-CCCeEEEEEEeCChHHHHHHHhCC----------
Confidence 4667777766554 7899999999999876667899999999885 457999999999999999997666
Q ss_pred cceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHh
Q 008159 263 RCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLL 342 (575)
Q Consensus 263 ~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l 342 (575)
+|+.+.|+||||.+..+.. +++++|||||+||||++||++++.... ..++++++|++|+.+++.+.+++.++.
T Consensus 76 ~G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~~l~ 148 (216)
T cd06198 76 PGTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG------DARPVTLFYCVRDPEDAVFLDELRALA 148 (216)
T ss_pred CCCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC------CCceEEEEEEECCHHHhhhHHHHHHHH
Confidence 6999999999999876543 789999999999999999999998752 247899999999999999999998763
Q ss_pred hhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 343 SNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 343 ~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
.+ .++++++..+++++ +....+.+. +.....+...+|+|||++ |+++++..+..
T Consensus 149 ~~-----~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~vyicGp~~--m~~~v~~~l~~ 202 (216)
T cd06198 149 AA-----AGVVLHVIDSPSDG-RLTLEQLVR-----ALVPDLADADVWFCGPPG--MADALEKGLRA 202 (216)
T ss_pred Hh-----cCeEEEEEeCCCCc-ccchhhhhh-----hcCCCcCCCeEEEECcHH--HHHHHHHHHHH
Confidence 22 25666665554332 222222220 111122346899999999 99999998877
No 43
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.96 E-value=5.4e-28 Score=237.94 Aligned_cols=213 Identities=16% Similarity=0.222 Sum_probs=170.3
Q ss_pred eEEEEEEecCCeEEEEEecCC---CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHHH
Q 008159 175 CILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQ 249 (575)
Q Consensus 175 ~v~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~~ 249 (575)
++++.+.+++++..+++..++ .+.|+||||+.|.+|..+....||||++|.+. +++.++|+||.. |..|++|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~-~~~~~~~~v~~~~~G~~s~~l~~ 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDD-DKGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCC-cCCEEEEEEEECCCCcchhHHhc
Confidence 467888899999999988764 47899999999999987767889999999885 456899999984 888999975
Q ss_pred HHHhcccCCcccCcceeEEEeCCCCCCCCCcCCC-CeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 250 MIHAELDSDADQMRCIPVAIEGPYGPATMDFLRY-DSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 250 ~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~-~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
++ +|+++.++||+|.+..+.... +++||||||+||||+++++++++... ....+++++|++|+
T Consensus 81 -~~----------~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-----~~~~~i~l~~~~r~ 144 (234)
T cd06183 81 -LK----------PGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP-----EDKTKISLLYANRT 144 (234)
T ss_pred -CC----------CCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc-----CcCcEEEEEEecCC
Confidence 33 699999999999987544343 79999999999999999999998642 12478999999999
Q ss_pred cchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhcc--CCCceeEEecCCchHHHH-HHHH
Q 008159 329 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRF--GTQSNYAVNGLESLIWMA-ALVG 405 (575)
Q Consensus 329 ~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~vcGp~~~~~~~-~v~~ 405 (575)
.++..+.+++.++.... ..++++.+++++++..+.+..|++++......... .....+|+|||.+ ||+ ++.+
T Consensus 145 ~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~--~~~~~~~~ 219 (234)
T cd06183 145 EEDILLREELDELAKKH---PDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPP--MIEGAVKG 219 (234)
T ss_pred HHHhhhHHHHHHHHHhC---cccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHH--HHHHHHHH
Confidence 99999999988764321 25788888888776656667788876654443322 2346799999999 999 9999
Q ss_pred HHHH
Q 008159 406 ITSI 409 (575)
Q Consensus 406 ~~~~ 409 (575)
.+..
T Consensus 220 ~l~~ 223 (234)
T cd06183 220 LLKE 223 (234)
T ss_pred HHHH
Confidence 8876
No 44
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.96 E-value=8.3e-28 Score=237.73 Aligned_cols=214 Identities=20% Similarity=0.248 Sum_probs=169.9
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC----CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAG----LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSS 246 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~----~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~ 246 (575)
.+++++++.+++++.++++..+.+ +.|+||||+.|++|..+...+||||++|.|. ++.++|+||.. |..|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~--~~~l~~~i~~~~~G~~s~~ 80 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG--DDELRITVKRVPGGRFSNW 80 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC--CCcEEEEEEEcCCCccchh
Confidence 467889999999999999887654 5899999999999966666889999999874 34899999984 888999
Q ss_pred HHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcC-CCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 008159 247 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 325 (575)
Q Consensus 247 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~ 325 (575)
|.+.++ +|+.+.|.||+|.+..... .+++++|||||+||||++++++++.... ..++++++|+
T Consensus 81 l~~~~~----------~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~------~~~~v~l~~~ 144 (241)
T cd06214 81 ANDELK----------AGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE------PASRVTLVYG 144 (241)
T ss_pred HHhccC----------CCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC------CCCcEEEEEE
Confidence 986655 6999999999999876544 4789999999999999999999988752 2478999999
Q ss_pred eCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhc----cCCCceeEEecCCchHHHH
Q 008159 326 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVR----FGTQSNYAVNGLESLIWMA 401 (575)
Q Consensus 326 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~vcGp~~~~~~~ 401 (575)
+|+.+++.+.+++.++... ...++++..++|+++..+.+..|++++....+... ..+...+|+|||++ |++
T Consensus 145 ~r~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~--mv~ 219 (241)
T cd06214 145 NRTEASVIFREELADLKAR---YPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEP--MMD 219 (241)
T ss_pred eCCHHHhhHHHHHHHHHHh---CcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHH--HHH
Confidence 9999999999998876322 12467888788876655544567776543322221 12346799999999 999
Q ss_pred HHHHHHHH
Q 008159 402 ALVGITSI 409 (575)
Q Consensus 402 ~v~~~~~~ 409 (575)
++.+.+.+
T Consensus 220 ~v~~~l~~ 227 (241)
T cd06214 220 AVEAALLE 227 (241)
T ss_pred HHHHHHHH
Confidence 99998876
No 45
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.96 E-value=5.4e-28 Score=235.13 Aligned_cols=186 Identities=19% Similarity=0.302 Sum_probs=144.2
Q ss_pred EEEEecCCeEEEEEecCCC---CcccCCeEEEEEeCCC----------------CCCccccCccccCCCCC--CCcEEEE
Q 008159 178 SARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSI----------------SKFQWHSFSITSSSSVD--DQTMSLI 236 (575)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~----------------~~~~~hpfSI~s~p~~~--~~~l~l~ 236 (575)
+.+.+++++.++++..+.+ +.|+|||||.|++|.. +...+|||||+|.|.++ .+.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3456789999999887766 8999999999999752 12357999999998633 2789999
Q ss_pred EEeCCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCc---CCCCeEEEEEeCCChhhHHHHHHHHHHhhccCC
Q 008159 237 VKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF---LRYDSLLLVAGGIGITPFLSILQEIASAQSNRK 313 (575)
Q Consensus 237 Ik~~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~---~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~ 313 (575)
||+.|.+|++|++...... ..|+.+.++||+|.|..+. ..+++++||||||||||++||+++++...
T Consensus 82 vk~~G~~T~~L~~~~~~~~------~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~---- 151 (220)
T cd06197 82 VRKKGPVTGFLFQVARRLR------EQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSR---- 151 (220)
T ss_pred EEeCCCCCHHHHHhhhccc------CCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcc----
Confidence 9999999999998765110 1288999999999987543 34689999999999999999999998642
Q ss_pred CCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEec
Q 008159 314 YRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNG 393 (575)
Q Consensus 314 ~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcG 393 (575)
...++++|+|++|+.+++.+.+++.+.. . .......+.+ ..+|+||
T Consensus 152 -~~~~~v~l~~~~r~~~~~~~~~el~~~~-----~-~~~~~~~~~~---------------------------~~v~~CG 197 (220)
T cd06197 152 -NTTWDITLLWSLREDDLPLVMDTLVRFP-----G-LPVSTTLFIT---------------------------SEVYLCG 197 (220)
T ss_pred -cCCCcEEEEEEecchhhHHHHHHHHhcc-----C-CceEEEEEEe---------------------------ccEEEEC
Confidence 1246899999999999999999986531 1 1122332222 1579999
Q ss_pred CCchHHHHHHHHHHHH
Q 008159 394 LESLIWMAALVGITSI 409 (575)
Q Consensus 394 p~~~~~~~~v~~~~~~ 409 (575)
|++ ||+++.+.+..
T Consensus 198 P~~--m~~~~~~~~~~ 211 (220)
T cd06197 198 PPA--LEKAVLEWLEG 211 (220)
T ss_pred cHH--HHHHHHHHhhh
Confidence 999 99999887665
No 46
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.96 E-value=7.3e-28 Score=238.57 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=160.9
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCccHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQM 250 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~L~~~ 250 (575)
..+|++++.++++++++++..+. ..|+||||+.|.++..+...+|||||+|.|. ++.++++||. .|..|++|++
T Consensus 6 ~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 6 TGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred EEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeCCCCcChHHHh-
Confidence 46788899999999999998653 4799999999999755555689999999984 4589999998 4999999974
Q ss_pred HHhcccCCcccCcceeEEEeCCC-CCCCCCcC-CCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 251 IHAELDSDADQMRCIPVAIEGPY-GPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPy-G~~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
++ +|+.+.|.||+ |.+.++.. ..++++||||||||||++||++++...+ ..++++|+|++|+
T Consensus 82 l~----------~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------~~~~v~l~~g~r~ 145 (248)
T PRK10926 82 LK----------PGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------RFKNLVLVHAARY 145 (248)
T ss_pred CC----------CCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------CCCcEEEEEeCCc
Confidence 55 79999999988 44443322 3478999999999999999999986542 2368999999999
Q ss_pred cchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhh----hhhc---cCCCceeEEecCCchHHHH
Q 008159 329 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLV----RAVR---FGTQSNYAVNGLESLIWMA 401 (575)
Q Consensus 329 ~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~----~~~~---~~~~~~~~vcGp~~~~~~~ 401 (575)
.+++.+.+++.++..+. ..++++...+|+++. .....|++++.... ..+. ..+...+|+|||++ ||+
T Consensus 146 ~~d~~~~~el~~l~~~~---~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~--Mv~ 219 (248)
T PRK10926 146 AADLSYLPLMQELEQRY---EGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQ--MVR 219 (248)
T ss_pred HHHHHHHHHHHHHHHhC---cCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHH--HHH
Confidence 99999999998753221 246888888888654 33346776543211 1111 12346799999999 999
Q ss_pred HHHHHHHH
Q 008159 402 ALVGITSI 409 (575)
Q Consensus 402 ~v~~~~~~ 409 (575)
++.+.+..
T Consensus 220 ~~~~~l~~ 227 (248)
T PRK10926 220 DTQQLLKE 227 (248)
T ss_pred HHHHHHHH
Confidence 99887654
No 47
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.96 E-value=1.9e-27 Score=242.74 Aligned_cols=220 Identities=16% Similarity=0.194 Sum_probs=164.8
Q ss_pred ceeEEEEEEec-----CCeEEEEEecCCCCcccCCeEEEEEeCCC-----C-CCccccCccccCCCCC---CCcEEEEEE
Q 008159 173 ETCILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSI-----S-KFQWHSFSITSSSSVD---DQTMSLIVK 238 (575)
Q Consensus 173 ~~~v~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~-----~-~~~~hpfSI~s~p~~~---~~~l~l~Ik 238 (575)
+.+|++++.++ +++.+++++.+..+.|+||||+.|.+|+. + +..+|+|||+|+|..+ +..++|+||
T Consensus 26 ~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr 105 (307)
T PLN03116 26 TATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVR 105 (307)
T ss_pred EEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEE
Confidence 46788888887 89999999988889999999999987742 1 2257999999998522 137999998
Q ss_pred e---------------CCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCc--CCCCeEEEEEeCCChhhHHHH
Q 008159 239 C---------------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF--LRYDSLLLVAGGIGITPFLSI 301 (575)
Q Consensus 239 ~---------------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~--~~~~~vvlIagGiGITP~lsi 301 (575)
+ .|..|++|++ ++ +|+.+.|.||+|.+.... +..+++||||||+||||++||
T Consensus 106 ~~~~~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sm 174 (307)
T PLN03116 106 RAVYYDPETGKEDPAKKGVCSNFLCD-AK----------PGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGF 174 (307)
T ss_pred EEEEecCCcCCCCCccCcchhhhHhh-CC----------CCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHH
Confidence 5 4888999987 66 799999999999986522 345789999999999999999
Q ss_pred HHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhh-
Q 008159 302 LQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA- 380 (575)
Q Consensus 302 l~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~- 380 (575)
+++++..+.. ......+++|+|++|+.+++.+.+++.++.... ..+++++..+++++..+.+.+|.+++......
T Consensus 175 l~~~l~~~~~-~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~---~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~ 250 (307)
T PLN03116 175 LRRMFMEDVP-AFKFGGLAWLFLGVANSDSLLYDDEFERYLKDY---PDNFRYDYALSREQKNKKGGKMYVQDKIEEYSD 250 (307)
T ss_pred HHHHHhhccc-cccCCCcEEEEEecCCcccchHHHHHHHHHHhC---CCcEEEEEEEccCCcccCCCccchhhHHHHHHH
Confidence 9998764211 011235799999999999999999998764321 13688888888876544444455554322111
Q ss_pred --h-ccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 381 --V-RFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 381 --~-~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
. ...+...+|+|||.+ ||+++.+.+..
T Consensus 251 ~~~~~~~~~~~vYiCGp~~--mv~~v~~~L~~ 280 (307)
T PLN03116 251 EIFKLLDNGAHIYFCGLKG--MMPGIQDTLKR 280 (307)
T ss_pred HHHhhhcCCcEEEEeCCHH--HHHHHHHHHHH
Confidence 0 122356799999988 99999887766
No 48
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.95 E-value=1.2e-27 Score=254.03 Aligned_cols=218 Identities=14% Similarity=0.198 Sum_probs=170.1
Q ss_pred ceeEEEEEEecCCeEEEEEecCC---CCcccCCeEEEEEeCCCC--CCccccCccccCCCCCCCcEEEEEEeC--CCccH
Q 008159 173 ETCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTS 245 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~~--~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~ 245 (575)
..+|++++.+++++..+++..+. ...|+||||+.|.++..+ ..++|||||+|.|. ++.++|+||+. |..|+
T Consensus 156 ~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~~G~~S~ 233 (399)
T PRK13289 156 DFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREAGGKVSN 233 (399)
T ss_pred EEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECCCCeehH
Confidence 35788999999999999997653 368999999999997543 23469999999874 56899999986 99999
Q ss_pred HHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 008159 246 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 325 (575)
Q Consensus 246 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~ 325 (575)
+|++.++ +|+.+.|.||+|.|.++....+++|||||||||||++||+++++..+ ..++++|+|+
T Consensus 234 ~L~~~l~----------~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~ 297 (399)
T PRK13289 234 YLHDHVN----------VGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHA 297 (399)
T ss_pred HHhhcCC----------CCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEE
Confidence 9998666 79999999999998765445689999999999999999999998653 2478999999
Q ss_pred eCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCc-----chhhhhhchhhhhhhhccCCCceeEEecCCchHHH
Q 008159 326 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-----VTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWM 400 (575)
Q Consensus 326 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~ 400 (575)
+|+.+++.+.+++.++.. ..+++++..++++++..+ ....|++++....+... .....+|+|||++ |+
T Consensus 298 ~r~~~~~~~~~eL~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~-~~~~~vyiCGp~~--m~ 370 (399)
T PRK13289 298 ARNGGVHAFRDEVEALAA----RHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLP-DPDADFYFCGPVP--FM 370 (399)
T ss_pred eCChhhchHHHHHHHHHH----hCCCcEEEEEECCCccccccCCcccccCcccHHHHHhhCC-CCCCEEEEECCHH--HH
Confidence 999999999999987632 234788888888754321 11246776543323221 1356799999999 99
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008159 401 AALVGITSILFVIFLIS 417 (575)
Q Consensus 401 ~~v~~~~~~~~~~~~~~ 417 (575)
+++...+.. .|+...
T Consensus 371 ~~v~~~L~~--~Gv~~~ 385 (399)
T PRK13289 371 QFVAKQLLE--LGVPEE 385 (399)
T ss_pred HHHHHHHHH--cCCCHH
Confidence 999999877 555333
No 49
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.95 E-value=2.3e-27 Score=241.89 Aligned_cols=215 Identities=13% Similarity=0.118 Sum_probs=163.5
Q ss_pred ceeEEEEEEecCCeEEEEEecCC--CCcccCCeEEEEEeCCC---CCCccccCccccCCCCCCCcEEEEEEe--CCCccH
Q 008159 173 ETCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSI---SKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTS 245 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~--~~~~~pGQ~v~l~~p~~---~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~ 245 (575)
..+|.+++.+++++.++++..|. .+.|+||||+.+.++.. +...+|+||++|.|. +++.++|+||+ .|..|+
T Consensus 54 ~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~-~~~~le~~IK~~~~G~~S~ 132 (325)
T PTZ00274 54 PYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANH-TKGYFDIIVKRKKDGLMTN 132 (325)
T ss_pred EEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCC-CCCeEEEEEEEcCCCcccH
Confidence 46788999999999999996543 68999999999877632 234689999999986 56799999999 677899
Q ss_pred HHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 008159 246 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 325 (575)
Q Consensus 246 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~ 325 (575)
+|++ ++ +|+.+.+.||+|.+..+....+++|||||||||||++||+++++.++.........+++|+|+
T Consensus 133 ~L~~-lk----------~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg 201 (325)
T PTZ00274 133 HLFG-MH----------VGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFC 201 (325)
T ss_pred HHhc-CC----------CCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEE
Confidence 9985 55 799999999988765443445799999999999999999999887531111112358999999
Q ss_pred eCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCC--CCcchhhhhhchhhhhhhhccC--CCceeEEecCCchHHHH
Q 008159 326 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVREVLNDLSLVRAVRFG--TQSNYAVNGLESLIWMA 401 (575)
Q Consensus 326 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~--~~~~~~~g~~~~~~~~~~~~~~--~~~~~~vcGp~~~~~~~ 401 (575)
+|+.+++.+.+++.++..+. ..++++.+.+++++ ..+.+..|++++..+.+..... ....+|+|||++ ||+
T Consensus 202 ~R~~~di~~~~eL~~La~~~---~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~--Mm~ 276 (325)
T PTZ00274 202 NRTERHILLKGLFDDLARRY---SNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQ--LLN 276 (325)
T ss_pred cCCHHHhhHHHHHHHHHHhC---CCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHH--HHH
Confidence 99999999999988764321 13688888887653 2345677888876543332211 124699999999 999
Q ss_pred HHH
Q 008159 402 ALV 404 (575)
Q Consensus 402 ~v~ 404 (575)
++.
T Consensus 277 av~ 279 (325)
T PTZ00274 277 HVA 279 (325)
T ss_pred Hhc
Confidence 875
No 50
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.95 E-value=7.5e-27 Score=236.27 Aligned_cols=220 Identities=18% Similarity=0.240 Sum_probs=165.0
Q ss_pred ceeEEEEEEec-----CCeEEEEEecCCCCcccCCeEEEEEeCCC----C-CCccccCccccCCCC---CCCcEEEEEEe
Q 008159 173 ETCILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSI----S-KFQWHSFSITSSSSV---DDQTMSLIVKC 239 (575)
Q Consensus 173 ~~~v~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~----~-~~~~hpfSI~s~p~~---~~~~l~l~Ik~ 239 (575)
..+|++++.++ +++.++++..+..+.|+|||||.|.+|.. + +...|||||+|.|.. +++.++|+||.
T Consensus 10 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~ 89 (286)
T cd06208 10 IGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKR 89 (286)
T ss_pred EEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEE
Confidence 46788888887 68999999887788999999999987642 2 234799999998752 24689999998
Q ss_pred C------------CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCc-CCCCeEEEEEeCCChhhHHHHHHHHH
Q 008159 240 D------------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF-LRYDSLLLVAGGIGITPFLSILQEIA 306 (575)
Q Consensus 240 ~------------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~-~~~~~vvlIagGiGITP~lsil~~l~ 306 (575)
. |..|++|.+ ++ +|+.|.|.||+|.+.... ...++++|||||+||||++||+++++
T Consensus 90 ~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~ 158 (286)
T cd06208 90 LVYTDPETDETKKGVCSNYLCD-LK----------PGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLF 158 (286)
T ss_pred EEEecCCCCceeccchHHHHhh-CC----------CCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 4 888999987 44 699999999999986532 23468999999999999999999988
Q ss_pred HhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhh--h--c
Q 008159 307 SAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA--V--R 382 (575)
Q Consensus 307 ~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~--~--~ 382 (575)
.... ......++++|+|++|+.+++.+.+++.++..+. ..++++++.+|+++..+.+.+|++++...... + .
T Consensus 159 ~~~~-~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~---~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~ 234 (286)
T cd06208 159 REKH-ADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQY---PDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNL 234 (286)
T ss_pred Hhhh-cccCCCCCEEEEEEecCccchhHHHHHHHHHHhC---CCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHH
Confidence 6420 0011236799999999999999999988764321 23688888888876544444555554332211 0 0
Q ss_pred cC-CCceeEEecCCchHHHHHHHHHHHH
Q 008159 383 FG-TQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 383 ~~-~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
.. +...+|+|||.+ |++++.+.+..
T Consensus 235 l~~~~~~vYiCGp~~--m~~~v~~~L~~ 260 (286)
T cd06208 235 LDKDNTHVYICGLKG--MEPGVDDALTS 260 (286)
T ss_pred HhcCCcEEEEeCCch--HHHHHHHHHHH
Confidence 11 335799999999 99999988776
No 51
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.95 E-value=4.8e-27 Score=249.19 Aligned_cols=217 Identities=15% Similarity=0.223 Sum_probs=168.8
Q ss_pred ceeEEEEEEecCCeEEEEEecC--CCCcccCCeEEEEEeCCC-----------------------------CCCccccCc
Q 008159 173 ETCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSI-----------------------------SKFQWHSFS 221 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~-----------------------------~~~~~hpfS 221 (575)
+.+|++++.+++++.++++..+ .+..|+||||+.|++|.. +...+||||
T Consensus 135 ~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 214 (409)
T PRK05464 135 ECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYS 214 (409)
T ss_pred EEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeec
Confidence 4678888889999999998776 357899999999999742 234679999
Q ss_pred cccCCCCCCCcEEEEEEe-----------CCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEE
Q 008159 222 ITSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVA 290 (575)
Q Consensus 222 I~s~p~~~~~~l~l~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIa 290 (575)
|+|.|. +++.++|+||. .|..|++|++ ++ +|+.+.|.||+|.|... ...+++||||
T Consensus 215 ias~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~f~~~-~~~~~ivlIA 281 (409)
T PRK05464 215 MANYPE-EKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-LK----------PGDKVTISGPFGEFFAK-DTDAEMVFIG 281 (409)
T ss_pred cCCCCC-CCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-CC----------CCCEEEEEccccCcEec-CCCceEEEEE
Confidence 999986 56789999996 4889999985 44 69999999999999764 4568999999
Q ss_pred eCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCC--Ccchh
Q 008159 291 GGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTV 368 (575)
Q Consensus 291 gGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~--~~~~~ 368 (575)
||+||||++||+++++.... ..++++|+|++|+.+++.+.+++.++.. ..+++++++.+++++. .+.+.
T Consensus 282 gGtGIaP~~sml~~~l~~~~-----~~~~v~L~~g~r~~~d~~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~g~ 352 (409)
T PRK05464 282 GGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYVEDFDQLAA----ENPNFKWHVALSDPLPEDNWTGY 352 (409)
T ss_pred eccChhHHHHHHHHHHhCCC-----CCceEEEEEecCCHHHhhHHHHHHHHHH----hCCCeEEEEEEcCCCCCCCCCCc
Confidence 99999999999998876421 2368999999999999999999987532 2357888887776532 23456
Q ss_pred hhhhchhhhhhhhc---cCCCceeEEecCCchHHHHHHHHHHHHHHHHHH
Q 008159 369 REVLNDLSLVRAVR---FGTQSNYAVNGLESLIWMAALVGITSILFVIFL 415 (575)
Q Consensus 369 ~g~~~~~~~~~~~~---~~~~~~~~vcGp~~~~~~~~v~~~~~~~~~~~~ 415 (575)
+|++++........ ..+...+|+|||.+ ||+++.+.+.+ .|+.
T Consensus 353 ~G~v~~~l~~~~l~~~~~~~~~~vyiCGP~~--m~~av~~~L~~--~Gv~ 398 (409)
T PRK05464 353 TGFIHNVLYENYLKDHEAPEDCEYYMCGPPM--MNAAVIKMLKD--LGVE 398 (409)
T ss_pred cceeCHHHHHhhhhhcCCCCCeEEEEECCHH--HHHHHHHHHHH--cCCC
Confidence 67777654332221 12346799999999 99999999877 5553
No 52
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.95 E-value=1.1e-26 Score=239.32 Aligned_cols=219 Identities=18% Similarity=0.234 Sum_probs=163.3
Q ss_pred eeEEEEEEecC-----CeEEEEEecCCCCcccCCeEEEEEeCCC---C-CCccccCccccCCCC---CCCcEEEEEEe--
Q 008159 174 TCILSARVFPS-----KAIELILPKHAGLKFTPTSVIFMKIPSI---S-KFQWHSFSITSSSSV---DDQTMSLIVKC-- 239 (575)
Q Consensus 174 ~~v~~~~~~~~-----~~~~l~~~~~~~~~~~pGQ~v~l~~p~~---~-~~~~hpfSI~s~p~~---~~~~l~l~Ik~-- 239 (575)
.++++.+.+.+ ++.+|++..+..+.|+||||+.|.+|+. + +...|||||+|+|.. +++.++|+||+
T Consensus 93 ~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~ 172 (367)
T PLN03115 93 GRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 172 (367)
T ss_pred EEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEE
Confidence 35566665543 8899999877789999999999998742 2 345799999999842 24689999996
Q ss_pred ---------CCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCc-CCCCeEEEEEeCCChhhHHHHHHHHHHhh
Q 008159 240 ---------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF-LRYDSLLLVAGGIGITPFLSILQEIASAQ 309 (575)
Q Consensus 240 ---------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~-~~~~~vvlIagGiGITP~lsil~~l~~~~ 309 (575)
.|..|++|++ ++ +|+.|.|.||+|.+.... +...++||||||+|||||+||+++++...
T Consensus 173 y~~~~g~~~~G~~S~~L~~-Lk----------~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~ 241 (367)
T PLN03115 173 YTNDQGEIVKGVCSNFLCD-LK----------PGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEK 241 (367)
T ss_pred eecCCCccCCeehHhhHhh-CC----------CcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhc
Confidence 3788999987 55 699999999999875432 34468999999999999999999876542
Q ss_pred ccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhh--h-c-c-C
Q 008159 310 SNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA--V-R-F-G 384 (575)
Q Consensus 310 ~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~--~-~-~-~ 384 (575)
.. ......+++|+|++|+.+++.|.+++.++..+. ..+++++..+|+++..+.+.++++++...+.. + . . .
T Consensus 242 ~~-~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~---p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~ 317 (367)
T PLN03115 242 HD-DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKA---PENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKK 317 (367)
T ss_pred cc-cccCCCcEEEEEccCCHHHhhHHHHHHHHHHhC---CCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhccc
Confidence 11 111135799999999999999999998764321 24789999999987666555566655332211 1 1 1 2
Q ss_pred CCceeEEecCCchHHHHHHHHHHHH
Q 008159 385 TQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 385 ~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
+...+|+|||.+ |++.+.+++..
T Consensus 318 ~~~~vYiCGp~~--M~~~V~~~l~~ 340 (367)
T PLN03115 318 DNTYVYMCGLKG--MEKGIDDIMVS 340 (367)
T ss_pred CCeEEEEeCCHH--HHHHHHHHHHH
Confidence 346799999988 99999888776
No 53
>PRK05713 hypothetical protein; Provisional
Probab=99.95 E-value=9e-27 Score=238.65 Aligned_cols=202 Identities=14% Similarity=0.203 Sum_probs=155.7
Q ss_pred ceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCccHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQM 250 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~L~~~ 250 (575)
..+|++++.+++++++++++.+..+.|+||||+.|.++. ..+|||||+|.|. +++.++++||. .|.+|++|. .
T Consensus 93 ~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~-~~~~l~~~I~~~~~G~~s~~l~-~ 167 (312)
T PRK05713 93 PARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPG-EDPFLEFHIDCSRPGAFCDAAR-Q 167 (312)
T ss_pred CeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCC-CCCeEEEEEEEcCCCccchhhh-c
Confidence 477889999999999999987777899999999999864 2689999999986 56789999985 688999884 4
Q ss_pred HHhcccCCcccCcceeEEEeCCCCCC-CCCcC-CCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 251 IHAELDSDADQMRCIPVAIEGPYGPA-TMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPyG~~-~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
++ +|+.+.+.||+|.+ ..+.. ..+++|||||||||||++||++++++.+ ..++++|+|++|+
T Consensus 168 l~----------~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r~ 231 (312)
T PRK05713 168 LQ----------VGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG------HQGPIRLLHLARD 231 (312)
T ss_pred CC----------CCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEEcCc
Confidence 44 69999999999853 33322 4578999999999999999999988753 2367999999999
Q ss_pred cchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHH
Q 008159 329 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITS 408 (575)
Q Consensus 329 ~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~ 408 (575)
.+++.+.+++.++.. +.+++++.+.++++- ...+.+ .....+...+|+|||++ |++++.+.+.
T Consensus 232 ~~d~~~~~el~~l~~----~~~~~~~~~~~~~~~------~~~l~~-----~~~~~~~~~vyiCGp~~--mv~~~~~~L~ 294 (312)
T PRK05713 232 SAGHYLAEPLAALAG----RHPQLSVELVTAAQL------PAALAE-----LRLVSRQTMALLCGSPA--SVERFARRLY 294 (312)
T ss_pred hHHhhhHHHHHHHHH----HCCCcEEEEEECcch------hhhhhh-----ccCCCCCeEEEEeCCHH--HHHHHHHHHH
Confidence 999999999987642 234677776554321 111111 11112336799999999 9999999987
Q ss_pred HHHHHH
Q 008159 409 ILFVIF 414 (575)
Q Consensus 409 ~~~~~~ 414 (575)
. .|+
T Consensus 295 ~--~Gv 298 (312)
T PRK05713 295 L--AGL 298 (312)
T ss_pred H--cCC
Confidence 7 555
No 54
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.95 E-value=1.3e-26 Score=235.31 Aligned_cols=213 Identities=17% Similarity=0.226 Sum_probs=162.6
Q ss_pred ceeEEEEEEecCCeEEEEEecCC---CCcccCCeEEEEEeCCCCC----CccccCccccCCCCCCCcEEEEEEeC-----
Q 008159 173 ETCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISK----FQWHSFSITSSSSVDDQTMSLIVKCD----- 240 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~~~----~~~hpfSI~s~p~~~~~~l~l~Ik~~----- 240 (575)
..++++++.+++++..+++..+. .+.|+||||+.|+++..+. ...||||++|.|. +++.++|+||..
T Consensus 35 ~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~ 113 (300)
T PTZ00319 35 HFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVH 113 (300)
T ss_pred EEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCC
Confidence 36788899999999988886532 3689999999999975432 4679999999885 578899999975
Q ss_pred ------CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCc---------------CCCCeEEEEEeCCChhhHH
Q 008159 241 ------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF---------------LRYDSLLLVAGGIGITPFL 299 (575)
Q Consensus 241 ------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~---------------~~~~~vvlIagGiGITP~l 299 (575)
|..|++|. .++ +|+.+.|+||+|.|.... .+.++++|||||+||||++
T Consensus 114 ~~~~~~G~~S~~L~-~l~----------~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~ 182 (300)
T PTZ00319 114 PSFPNGGRLSQHLY-HMK----------LGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPML 182 (300)
T ss_pred CCCCCCCChhhhhh-cCC----------CCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHH
Confidence 89999995 455 799999999999874321 1235799999999999999
Q ss_pred HHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCC-CCcchhhhhhchhhhh
Q 008159 300 SILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE-QSSVTVREVLNDLSLV 378 (575)
Q Consensus 300 sil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~-~~~~~~~g~~~~~~~~ 378 (575)
||+++++... ....+++|+|++|+.+++.+.+++.+. . ..++++++..+++++ ..+.+..|++++....
T Consensus 183 sml~~l~~~~-----~~~~~i~liyg~r~~~dl~~~~eL~~~-~----~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~ 252 (300)
T PTZ00319 183 QIIHAIKKNK-----EDRTKVFLVYANQTEDDILLRKELDEA-A----KDPRFHVWYTLDREATPEWKYGTGYVDEEMLR 252 (300)
T ss_pred HHHHHHHhCC-----CCCceEEEEEecCCHHHhhHHHHHHHH-h----hCCCEEEEEEECCCCCCCcccccceeCHHHHH
Confidence 9999998642 123589999999999999999999773 2 235788888888753 3344567888876544
Q ss_pred hhhccC-------CCceeEEecCCchHHHH-HHHHHHHH
Q 008159 379 RAVRFG-------TQSNYAVNGLESLIWMA-ALVGITSI 409 (575)
Q Consensus 379 ~~~~~~-------~~~~~~vcGp~~~~~~~-~v~~~~~~ 409 (575)
+.+... ++..+|+|||++ ||+ ++.+.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~vyiCGp~~--mv~~~~~~~L~~ 289 (300)
T PTZ00319 253 AHLPVPDPQNSGIKKVMALMCGPPP--MLQMAVKPNLEK 289 (300)
T ss_pred hhcCCccccccccCCeEEEEECCHH--HHHHHHHHHHHH
Confidence 443211 235799999999 998 56667666
No 55
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.95 E-value=3.1e-26 Score=226.52 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=148.3
Q ss_pred CeEEEEEecC-CCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC-------CCccHHHHHHHHhccc
Q 008159 185 KAIELILPKH-AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD-------GEWTSSLYQMIHAELD 256 (575)
Q Consensus 185 ~~~~l~~~~~-~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~-------G~~T~~L~~~~~~~~~ 256 (575)
++.++++..+ +.+.|+||||+.|.++. ...+|||||+|.|. ++.++|+||.. |..|++|++.++
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~--~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~---- 88 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPA--DGALELLVRQVRHADGGLGLGSGWLTRHAP---- 88 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCC--CCEEEEEEEEeccCCCCCeeechhhhhCCC----
Confidence 5788888877 57899999999999764 45789999999984 57899999984 458999998765
Q ss_pred CCcccCcceeEEEeCCCC-CCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc-hhhh
Q 008159 257 SDADQMRCIPVAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ-EICL 334 (575)
Q Consensus 257 ~~~~~~~g~~v~v~GPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~-~l~~ 334 (575)
+|+.|.+.||.| .|..+ ...+++|||||||||||++||++++...+ .+++.++|++|+.+ ++.+
T Consensus 89 ------~Gd~v~i~gp~gg~F~~~-~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-------~~~~~l~~g~r~~~~d~~~ 154 (245)
T cd06200 89 ------IGASVALRLRENPGFHLP-DDGRPLILIGNGTGLAGLRSHLRARARAG-------RHRNWLLFGERQAAHDFFC 154 (245)
T ss_pred ------CCCEEEEEecCCCcccCC-CCCCCEEEEecCcChHHHHHHHHHHHhcc-------CCCeEEEEecCCccccHhH
Confidence 699999999866 55443 34578999999999999999999988642 25689999999984 8999
Q ss_pred HHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCC-chHHHHHHHHHHHH
Q 008159 335 LNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLE-SLIWMAALVGITSI 409 (575)
Q Consensus 335 ~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~-~~~~~~~v~~~~~~ 409 (575)
.+++.++.. ...++++++.+|++++.....++.+.+....-.....+...+|+|||. + |++++.+.+.+
T Consensus 155 ~~el~~~~~----~~~~~~~~~~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~--m~~~v~~~l~~ 224 (245)
T cd06200 155 REELEAWQA----AGHLARLDLAFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQG--MAPGVDAVLDE 224 (245)
T ss_pred HHHHHHHHH----CCCcceEEEEEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchh--hhHHHHHHHHH
Confidence 999987643 234567778888776533333343332221100011234679999999 9 99999988776
No 56
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=2.1e-27 Score=270.52 Aligned_cols=197 Identities=16% Similarity=0.255 Sum_probs=155.2
Q ss_pred eEEEEEEecCCeEEEEEecCC-CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHHh
Q 008159 175 CILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 253 (575)
Q Consensus 175 ~v~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~ 253 (575)
+|++++.++++++.+++..|. ...|+||||+.|+++..+ ++|||||+|.+. +++.++|+||..|..|++|++ ++
T Consensus 3 ~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~-~~g~i~~~vk~vG~~T~~L~~-l~- 77 (752)
T PRK12778 3 KIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADP-EKGTITLVIQEVGLSTTKLCE-LN- 77 (752)
T ss_pred EEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCC-CCCEEEEEEEEcCchHHHHhc-CC-
Confidence 578888999999999998764 357999999999997544 578999999986 567899999999999999985 44
Q ss_pred cccCCcccCcceeE-EEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 008159 254 ELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 332 (575)
Q Consensus 254 ~~~~~~~~~~g~~v-~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l 332 (575)
+|+.+ .|.||+|++... ...++++|||||+||||++++++++...+ .+++++|++|+.+++
T Consensus 78 ---------~Gd~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~~l 139 (752)
T PRK12778 78 ---------EGDYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAG--------NRVITILGGRSKELI 139 (752)
T ss_pred ---------CCCEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCC--------CeEEEEeccCCHHHh
Confidence 69999 799999998753 34579999999999999999999998752 579999999999999
Q ss_pred hhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccC-CCceeEEecCCchHHHHHHHHHHHH
Q 008159 333 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-TQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 333 ~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
.+.+++.++. .. + +++.+++ +.+.+|++++... +..... +.+.+|+|||++ ||+++.+.+..
T Consensus 140 ~~~~el~~~~-------~~--~--~~~t~dg-~~g~~G~v~~~l~-~~~~~~~~~~~vy~CGP~~--M~~~v~~~l~~ 202 (752)
T PRK12778 140 ILEDEMRESS-------DE--V--IIMTDDG-SYGRKGLVTDGLE-EVIKRETKVDKVFAIGPAI--MMKFVCLLTKK 202 (752)
T ss_pred hhHHHHHhhc-------Ce--E--EEEECCC-CCCCcccHHHHHH-HHhhcCCCCCEEEEECCHH--HHHHHHHHHHH
Confidence 9999987641 11 1 2333433 4556777776432 222211 235799999999 99999887655
No 57
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.95 E-value=8.5e-27 Score=246.95 Aligned_cols=216 Identities=15% Similarity=0.232 Sum_probs=167.2
Q ss_pred ceeEEEEEEecCCeEEEEEecC--CCCcccCCeEEEEEeCCC-----------------------------CCCccccCc
Q 008159 173 ETCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSI-----------------------------SKFQWHSFS 221 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~-----------------------------~~~~~hpfS 221 (575)
+.++++++.+++++.++++..+ .+..|+||||+.|.+|.. +...+||||
T Consensus 131 ~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 210 (405)
T TIGR01941 131 ECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYS 210 (405)
T ss_pred eeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeec
Confidence 4667888888999988888765 346899999999999742 224679999
Q ss_pred cccCCCCCCCcEEEEEEe-----------CCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEE
Q 008159 222 ITSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVA 290 (575)
Q Consensus 222 I~s~p~~~~~~l~l~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIa 290 (575)
|+|.|. +++.++|+||. .|..|++|++ ++ +|+.+.+.||+|.|.+. ...+++||||
T Consensus 211 ias~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~i~gP~G~f~l~-~~~~~lvlIA 277 (405)
T TIGR01941 211 MANYPA-EKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-LK----------PGDKVTISGPFGEFFAK-DTDAEMVFIG 277 (405)
T ss_pred CCCCCC-CCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-CC----------CcCEEEEEeccCCCeec-CCCCCEEEEe
Confidence 999986 56789999996 3889999985 55 69999999999999764 3567899999
Q ss_pred eCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCC--CCcchh
Q 008159 291 GGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTV 368 (575)
Q Consensus 291 gGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~--~~~~~~ 368 (575)
||+||||++||+++++... ...++++|+|++|+.+++.+.+++.++.. ..+++++++.+++++ +.+.+.
T Consensus 278 gGtGIaP~lsmi~~~l~~~-----~~~~~v~l~~g~R~~~dl~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~g~ 348 (405)
T TIGR01941 278 GGAGMAPMRSHIFDQLKRL-----KSKRKISFWYGARSLREMFYQEDFDQLEA----ENPNFVWHVALSDPQPEDNWTGY 348 (405)
T ss_pred cCcCcchHHHHHHHHHhcC-----CCCCeEEEEEecCCHHHHhHHHHHHHHHH----hCCCeEEEEEeCCCCccCCCCCc
Confidence 9999999999999877542 12368999999999999999999987532 235788888887653 234456
Q ss_pred hhhhchhhhhhhhc---cCCCceeEEecCCchHHHHHHHHHHHHHHHHH
Q 008159 369 REVLNDLSLVRAVR---FGTQSNYAVNGLESLIWMAALVGITSILFVIF 414 (575)
Q Consensus 369 ~g~~~~~~~~~~~~---~~~~~~~~vcGp~~~~~~~~v~~~~~~~~~~~ 414 (575)
+|++++......+. ..+...+|+|||++ ||+++.+.+.+ .|+
T Consensus 349 ~G~v~~~l~~~~l~~~~~~~~~~vylCGP~~--m~~av~~~L~~--~Gv 393 (405)
T TIGR01941 349 TGFIHNVLYENYLKDHDAPEDCEFYMCGPPM--MNAAVIKMLED--LGV 393 (405)
T ss_pred cceeCHHHHHhhhcccCCCCCeEEEEeCCHH--HHHHHHHHHHH--cCC
Confidence 67776544322221 12346799999999 99999999877 555
No 58
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.94 E-value=2.9e-27 Score=273.82 Aligned_cols=253 Identities=15% Similarity=0.163 Sum_probs=189.9
Q ss_pred eEEEEEEecCCeEEEEEecCC-CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHHHh
Q 008159 175 CILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 253 (575)
Q Consensus 175 ~v~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~ 253 (575)
.|++.+.+++++..+++..|. ...|+|||||.|+++..+ +++||||++.+. +++.++|.||..|..|++|++.++
T Consensus 3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~-~~g~i~l~vk~vG~~T~~L~~~lk- 78 (1006)
T PRK12775 3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDR-KKGTITMVVQALGKTTREMMTKFK- 78 (1006)
T ss_pred EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCC-CCCEEEEEEEecCcHHHHHHhcCC-
Confidence 578889999999999998875 578999999999997543 579999998875 567899999999999999987666
Q ss_pred cccCCcccCcceeE-EEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh
Q 008159 254 ELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 332 (575)
Q Consensus 254 ~~~~~~~~~~g~~v-~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l 332 (575)
+|+.+ .+.||+|.+.. ....+++||||||+||||++||++++.+.+ .+++++|++|+.+++
T Consensus 79 ---------~Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g--------~~v~li~g~R~~~~l 140 (1006)
T PRK12775 79 ---------AGDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAG--------ARTTGIIGFRNKDLV 140 (1006)
T ss_pred ---------CCCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCC--------CcEEEEEeCCChHHc
Confidence 79998 79999998754 234579999999999999999999987652 569999999999999
Q ss_pred hhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHHHHH
Q 008159 333 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFV 412 (575)
Q Consensus 333 ~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~~~~ 412 (575)
.+.+++.+.. .+ ++++.+++ +.+.+|++++... +.+.....+.+|+|||.+ ||+++.+.+.. .
T Consensus 141 ~~~del~~~~-------~~----~~v~tddg-s~G~~G~vt~~l~-~~l~~~~~d~vy~CGP~~--Mm~av~~~~~~--~ 203 (1006)
T PRK12775 141 FWEDKFGKYC-------DD----LIVCTDDG-SYGKPGFVTAALK-EVCEKDKPDLVVAIGPLP--MMNACVETTRP--F 203 (1006)
T ss_pred ccHHHHHhhc-------Cc----EEEEECCC-CCCCCCChHHHHH-HHhccCCCCEEEEECCHH--HHHHHHHHHHH--C
Confidence 9988886531 11 24444444 4556777776442 222212235799999999 99999887655 1
Q ss_pred HHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCcCCCc
Q 008159 413 IFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGK 492 (575)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~~~~~~~ 492 (575)
++ .. .++++..|.|+.|+||.|++++. |+ ..
T Consensus 204 gi-----~~-----------------------------------~vSle~~M~cG~G~Cg~C~v~~~-~~--------~~ 234 (1006)
T PRK12775 204 GV-----KT-----------------------------------MVSLNAIMVDGTGMCGSCRVTVG-GE--------VK 234 (1006)
T ss_pred CC-----cE-----------------------------------EECChhheeCccceeCCCEeeeC-Cc--------eE
Confidence 11 00 02244568999999999998752 21 13
Q ss_pred ccccCCCcceeeeeeecCCCChHHHHHHH
Q 008159 493 AVQVLGPIEEEHEINFGGRPNFEEIFSEL 521 (575)
Q Consensus 493 ~~e~~~~~v~~~~v~fg~RPn~~~i~~~~ 521 (575)
..|..+|.. + +..-||++++++.
T Consensus 235 ~~C~DGPvF-----~-~~~v~~~~~~~r~ 257 (1006)
T PRK12775 235 FACVDGPDF-----D-GHKVDFKELHARQ 257 (1006)
T ss_pred EEeCCCCeE-----E-ccEeeHHHHHhHH
Confidence 567778732 2 4677888887765
No 59
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.93 E-value=3.9e-25 Score=221.04 Aligned_cols=207 Identities=18% Similarity=0.169 Sum_probs=152.4
Q ss_pred cCCeEEEEEecC--CCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC-----------CCccHHHHH
Q 008159 183 PSKAIELILPKH--AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQ 249 (575)
Q Consensus 183 ~~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~-----------G~~T~~L~~ 249 (575)
+.++.++++..+ ..+.|+||||+.|.+|. ...+|||||+|.|..+++.++|+||.. |..|+.|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 357888999887 57899999999999875 446899999999863457899999985 889999975
Q ss_pred HHHhcccCCcccCcceeEEEeCCCC-CCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 250 MIHAELDSDADQMRCIPVAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 250 ~~~~~~~~~~~~~~g~~v~v~GPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
++ +|+.+.+.||+| .|.++....+++|||||||||||++||+++++... ++.....++.|+|++|+
T Consensus 92 -lk----------~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~~~~v~l~~g~r~ 158 (267)
T cd06182 92 -LQ----------LGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALR--ANGKARGPAWLFFGCRN 158 (267)
T ss_pred -CC----------CCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh--hccccCCCEEEEEeCCC
Confidence 44 699999999999 88765444689999999999999999999998631 00112468999999999
Q ss_pred c-chhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCC-cchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHH
Q 008159 329 S-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGI 406 (575)
Q Consensus 329 ~-~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~ 406 (575)
. +++.+.+++.++.. ...+++++..+|+++.. ....++.+.+....-.....+...+|+|||.+ .|++++.++
T Consensus 159 ~~~d~~~~del~~~~~----~~~~~~~~~~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~~-~m~~~v~~~ 233 (267)
T cd06182 159 FASDYLYREELQEALK----DGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGDAK-SMAKDVEDA 233 (267)
T ss_pred CcccccHHHHHHHHHh----CCCcceEEEEEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECCcc-cchHHHHHH
Confidence 9 99999999987643 23577888888876542 11122222211110000112345899999885 378888877
Q ss_pred HHH
Q 008159 407 TSI 409 (575)
Q Consensus 407 ~~~ 409 (575)
+..
T Consensus 234 L~~ 236 (267)
T cd06182 234 LVK 236 (267)
T ss_pred HHH
Confidence 766
No 60
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.93 E-value=5.4e-25 Score=232.29 Aligned_cols=212 Identities=13% Similarity=0.199 Sum_probs=156.2
Q ss_pred ceeEEEEEEec-----CCeEEEEEecCC-CCcccCCeEEEEEeCCC----CCCccccCccccCCCCC---CCcEEEEEEe
Q 008159 173 ETCILSARVFP-----SKAIELILPKHA-GLKFTPTSVIFMKIPSI----SKFQWHSFSITSSSSVD---DQTMSLIVKC 239 (575)
Q Consensus 173 ~~~v~~~~~~~-----~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~----~~~~~hpfSI~s~p~~~---~~~l~l~Ik~ 239 (575)
..+|++++.++ +++.+++++.+. .+.|+||||+.|.+|.. .+..+|||||+|+|..+ .+.++|+||+
T Consensus 144 ~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~ 223 (411)
T TIGR03224 144 TATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKR 223 (411)
T ss_pred EEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEE
Confidence 46788888884 489999998765 68999999999998752 23468999999986321 1479999997
Q ss_pred C----------CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCC-CcCCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 008159 240 D----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM-DFLRYDSLLLVAGGIGITPFLSILQEIASA 308 (575)
Q Consensus 240 ~----------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~-~~~~~~~vvlIagGiGITP~lsil~~l~~~ 308 (575)
. |..|++|.+ ++ +|++|.+.||+|.++. +....+++|||||||||||++||++++...
T Consensus 224 v~~~~~g~~~~G~~S~~L~~-lk----------~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~ 292 (411)
T TIGR03224 224 VTTDHQGNAVRGVASNYLCD-LK----------KGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRR 292 (411)
T ss_pred EEecCCCCcCcccchhHHhc-CC----------CcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHH
Confidence 4 889999988 55 6999999999998543 322346899999999999999999998763
Q ss_pred hccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhc----c-
Q 008159 309 QSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVR----F- 383 (575)
Q Consensus 309 ~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~----~- 383 (575)
... ....+++|+|++|+.+++.+.+++.++.. ..+++++.++++++. .+|++++........ .
T Consensus 293 ~~~---~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~------~~~~~~~~~sr~~~~---~~g~V~d~l~~~~~~v~~ll~ 360 (411)
T TIGR03224 293 RDH---GEGGKLMLFFGARTKEELPYFGPLQKLPK------DFIDINFAFSRTPEQ---PKRYVQDAIRERAADVAALLK 360 (411)
T ss_pred hhc---CCCCCEEEEEecCccccchHHHHHHHHHh------cCceEEEEeccCCcc---CcccHhhHHHHhHHHHHHHHh
Confidence 211 12478999999999999999999877532 123556667775432 245555433221100 1
Q ss_pred CCCceeEEecCCchHHHHHHHHHHHH
Q 008159 384 GTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 384 ~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
..+..+|+|||.+ |++++...+..
T Consensus 361 ~~~~~vYiCGp~~--M~~~v~~~L~~ 384 (411)
T TIGR03224 361 DPNTYIYICGLKG--MEEGVLDAFRD 384 (411)
T ss_pred cCCcEEEEECCHH--HHHHHHHHHHH
Confidence 2346799999998 98888887766
No 61
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.93 E-value=6.9e-25 Score=212.37 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=146.1
Q ss_pred EEEEecCCeEEEEEecCCC---CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCC---CccHHHHHHH
Q 008159 178 SARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDG---EWTSSLYQMI 251 (575)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G---~~T~~L~~~~ 251 (575)
+++.+++++++++++.+.. ..|+||||+.|++|. ..+|||||+|.|. +++.++|+||..+ ..|.+|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~-~~~~l~~~v~~~~~g~~~s~~l~~~~ 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPA-DRDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCC-CCCEEEEEEEeccCCCchHHHHHhcC
Confidence 4667889999999988765 389999999999986 2679999999986 4588999999843 3788888766
Q ss_pred HhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcch
Q 008159 252 HAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 331 (575)
Q Consensus 252 ~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~ 331 (575)
+ +|+++.+.||+|.+..+. ..+++++||||+||||+++|++++... .++++++|++|+.++
T Consensus 78 ~----------~Gd~v~i~gP~g~f~~~~-~~~~~v~ia~GtGiap~~~il~~~~~~--------~~~v~l~~~~r~~~~ 138 (211)
T cd06185 78 R----------VGDELEVSAPRNLFPLDE-AARRHLLIAGGIGITPILSMARALAAR--------GADFELHYAGRSRED 138 (211)
T ss_pred C----------CCCEEEEcCCccCCcCCC-CCCcEEEEeccchHhHHHHHHHHHHhC--------CCCEEEEEEeCCCcc
Confidence 5 699999999999986542 457999999999999999999998763 267999999999999
Q ss_pred hhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 332 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 332 l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
+.+.+++.++. ..+ ++++.+.+.+ .......+. ...+...+|+|||++ |++++...+.+
T Consensus 139 ~~~~~~l~~~~------~~~--~~~~~~~~~~-~~~~~~~~~--------~~~~~~~vyicGp~~--m~~~~~~~l~~ 197 (211)
T cd06185 139 AAFLDELAALP------GDR--VHLHFDDEGG-RLDLAALLA--------APPAGTHVYVCGPEG--MMDAVRAAAAA 197 (211)
T ss_pred hhHHHHHhhhc------CCc--EEEEECCCCC-ccCHHHHhc--------cCCCCCEEEEECCHH--HHHHHHHHHHH
Confidence 99988887652 123 4444554321 111111111 112346899999999 99999998877
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.93 E-value=5.9e-26 Score=260.69 Aligned_cols=266 Identities=14% Similarity=0.124 Sum_probs=185.2
Q ss_pred ceeEEEEEEecCCeEEEEEecCC-CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMI 251 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~~ 251 (575)
..+|++++.+++++..+++..|. ...|+||||+.|+++..+ ++|||||++.|. +++.++++||..|..|..|.+ +
T Consensus 650 ~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~-~~g~i~l~Vk~vG~~T~~L~~-l 725 (944)
T PRK12779 650 PQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDA-EKGTIDLVVQGMGTSSLEINR-M 725 (944)
T ss_pred EEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCC-CCCEEEEEEEeeccHHHHHhc-C
Confidence 46788999999999999998764 357999999999986544 569999999875 567899999999988876643 4
Q ss_pred HhcccCCcccCcceeEE-EeCCCCCCCCCc--CCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC
Q 008159 252 HAELDSDADQMRCIPVA-IEGPYGPATMDF--LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 328 (575)
Q Consensus 252 ~~~~~~~~~~~~g~~v~-v~GPyG~~~~~~--~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~ 328 (575)
+ +|+.+. |.||+|.+.... ...+++||||||+||||+++|++++.+.+ .+++++|++|+
T Consensus 726 k----------~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g--------~~V~li~G~Rs 787 (944)
T PRK12779 726 A----------IGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--------NHVTLISGFRA 787 (944)
T ss_pred C----------CcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC--------CCEEEEEEeCC
Confidence 4 699994 999999985321 12368999999999999999999987652 57999999999
Q ss_pred cchhhhHHhHHHH--hhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccC-----CCceeEEecCCchHHHH
Q 008159 329 SQEICLLNSISPL--LSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-----TQSNYAVNGLESLIWMA 401 (575)
Q Consensus 329 ~~~l~~~~~l~~~--l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~vcGp~~~~~~~ 401 (575)
.+++.+.+++.++ +.+.. ...++ ++++.+++ +.+.+|++++.......... +...+|+|||++ ||+
T Consensus 788 ~edl~~~del~~L~~la~~~--~~~~~--v~~ttddg-s~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~~--Mmk 860 (944)
T PRK12779 788 KEFLFWTGDDERVGKLKAEF--GDQLD--VIYTTNDG-SFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPPL--MMR 860 (944)
T ss_pred HHHhhhHHHHHHHHHHHHHc--CCCeE--EEEEecCC-CCCCccccChHHHHHHHhcccccccCCcEEEEECCHH--HHH
Confidence 9998887665332 11111 12233 33444443 45667887764322111111 135689999999 999
Q ss_pred HHHHHHHHHHHHHHHHhheEEecCCCcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhh-h
Q 008159 402 ALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRL-K 480 (575)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~-~ 480 (575)
++.+.+.. .|+. . .++++-.|+|+.|+|++|+++.. .
T Consensus 861 av~~~l~~--~Gv~----~------------------------------------~vSlE~~M~CG~G~C~~C~v~~~~~ 898 (944)
T PRK12779 861 AVSDLTKP--YGVK----T------------------------------------VASLNSIMVDATGMCGACMVPVTID 898 (944)
T ss_pred HHHHHHHH--cCCC----e------------------------------------EEeecccccCCCeeeCeeeeeeecC
Confidence 99887655 2220 0 11233358999999999999742 2
Q ss_pred cCCCCCCcCCCcccccCCCcceeeeeeecCCCChHHHHHHH
Q 008159 481 KQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSEL 521 (575)
Q Consensus 481 g~v~~~~~~~~~~~e~~~~~v~~~~v~fg~RPn~~~i~~~~ 521 (575)
|. ......|..+|... ...-+|++++.+.
T Consensus 899 G~------~~~~~vC~DGPVF~------~~ev~~d~~~~r~ 927 (944)
T PRK12779 899 GK------MVRKHACIDGPEID------AHIIDWDKFLPRF 927 (944)
T ss_pred Ce------eeeeEEECCCCeEE------ccEeeHhHHHHHH
Confidence 21 00124667777332 3556788887664
No 63
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.93 E-value=2.2e-24 Score=218.23 Aligned_cols=206 Identities=12% Similarity=0.123 Sum_probs=151.6
Q ss_pred CceeEEEEEEec----CCeEEEEEecCC-------CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe-
Q 008159 172 PETCILSARVFP----SKAIELILPKHA-------GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC- 239 (575)
Q Consensus 172 ~~~~v~~~~~~~----~~~~~l~~~~~~-------~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~- 239 (575)
...++++.+.++ +++..+++..+. ...|+||||+.|..++ ....|||||+|.| +++.++|+||.
T Consensus 46 ~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g--~~~~R~YSias~p--~~g~l~l~Vk~~ 121 (289)
T cd06201 46 KALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG--SDVPRFYSLASSS--SDGFLEICVRKH 121 (289)
T ss_pred cceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC--CCCCceEecCCCC--CCCeEEEEEEeC
Confidence 356788888887 588889987765 4789999999998654 3367999999998 35789999997
Q ss_pred -CCCccHHHHHHHHhcccCCcccCcceeEEEe-CCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCC
Q 008159 240 -DGEWTSSLYQMIHAELDSDADQMRCIPVAIE-GPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFP 317 (575)
Q Consensus 240 -~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~-GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~ 317 (575)
.|..|++|++ ++ +|+.+.+. +|+|.|..+ ...++++||||||||||++||+++... .
T Consensus 122 ~~G~~S~~L~~-l~----------~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~---------~ 180 (289)
T cd06201 122 PGGLCSGYLHG-LK----------PGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAA---------R 180 (289)
T ss_pred CCccchhhHhh-CC----------CcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhc---------c
Confidence 7899999986 55 69999987 588888654 455789999999999999999987521 3
Q ss_pred ceEEEEEEeCCcc-hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCc
Q 008159 318 SKVQLIYVIKSSQ-EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLES 396 (575)
Q Consensus 318 ~~v~li~~~r~~~-~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~ 396 (575)
++++|+|++|+.+ ++.|.+++.++..+ ..+++++..++++.. ....++.+......-.....+...+|+|||.+
T Consensus 181 ~~v~L~~g~r~~~~d~~~~~eL~~l~~~----~~~~~~~~~~s~~~~-~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~ 255 (289)
T cd06201 181 RPMHLYWGGRDPASDFLYEDELDQYLAD----GRLTQLHTAFSRTPD-GAYVQDRLRADAERLRRLIEDGAQIMVCGSRA 255 (289)
T ss_pred CCEEEEEEecCcccchHHHHHHHHHHHc----CCCceEEEEECCCCC-cccchhHHHHhHHHHHHHHHCCcEEEEECCHH
Confidence 6799999999985 88899998876322 245667777776542 22222222111100000112346799999988
Q ss_pred hHHHHHHHHHHHH
Q 008159 397 LIWMAALVGITSI 409 (575)
Q Consensus 397 ~~~~~~v~~~~~~ 409 (575)
||+++.+.+..
T Consensus 256 --M~~~v~~~L~~ 266 (289)
T cd06201 256 --MAQGVAAVLEE 266 (289)
T ss_pred --HHHHHHHHHHH
Confidence 99999988776
No 64
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.92 E-value=6.6e-24 Score=210.08 Aligned_cols=201 Identities=17% Similarity=0.294 Sum_probs=157.1
Q ss_pred eeEEEEEEecCCeEEEEEecCCC-CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCccHHHHHH
Q 008159 174 TCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQM 250 (575)
Q Consensus 174 ~~v~~~~~~~~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~L~~~ 250 (575)
.+|.+++.+++++..+++..+.. +.++||||+.|+.|. ..++|||++|.+. +.+.++|+|+. .|..|.++.++
T Consensus 10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~-~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPD-DKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCC-cCCcEEEEEEEEeCChHHHHHhhc
Confidence 57899999999999998877654 689999999999998 3889999999986 45656666655 99999999876
Q ss_pred HHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc
Q 008159 251 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~ 330 (575)
. .|+.+.+.||||++.......+++++||||+|++|+.++++++.+.+ ...+++++|++|+++
T Consensus 86 k-----------~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~------~~~~V~~~~G~~~~~ 148 (252)
T COG0543 86 K-----------EGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG------DANKVTLLYGARTAK 148 (252)
T ss_pred c-----------CCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC------CCceEEEEEeccChh
Confidence 3 48999999999998755434555999999999999999999998752 237899999999999
Q ss_pred hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 331 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 331 ~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
++.+.+++.++.. + ++++.++ + .+.+.+|.++.....+.... +.+.+|+|||++ |++++...+..
T Consensus 149 dl~~~~el~~~~~-------~-~~~~~~~--~-~~~G~~G~v~~~~~~~~~~~-~~~~v~~cGp~~--M~~~v~~~~~~ 213 (252)
T COG0543 149 DLLLLDELEELAE-------K-EVHPVTD--D-GWKGRKGFVTTDVLKELLDL-EVDDVYICGPPA--MVKAVREKLKE 213 (252)
T ss_pred hcccHHHHHHhhc-------C-cEEEEEC--C-CCCccCcceeHHHHhhhccc-cCCEEEEECCHH--HHHHHHHHHHh
Confidence 9999999987521 1 2333332 3 36677888843333332222 458899999999 99999877665
No 65
>PLN02252 nitrate reductase [NADPH]
Probab=99.92 E-value=2.8e-24 Score=243.62 Aligned_cols=215 Identities=16% Similarity=0.188 Sum_probs=167.4
Q ss_pred ceeEEEEEEecCCeEEEEEecCCC---CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC---------
Q 008159 173 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--------- 240 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--------- 240 (575)
.+++++++.+++++..++|..+.. +.++||||++|+++..+....||||++|.+. +++.++|+||..
T Consensus 636 ~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~~~~~~~p 714 (888)
T PLN02252 636 PCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDD-EVGHFELVIKVYFKNVHPKFP 714 (888)
T ss_pred EEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCC-CCCEEEEEEEEEeccccCccC
Confidence 467899999999999998876543 5799999999999765656789999999986 567999999974
Q ss_pred --CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCC--------C--cCCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 008159 241 --GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM--------D--FLRYDSLLLVAGGIGITPFLSILQEIASA 308 (575)
Q Consensus 241 --G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~--------~--~~~~~~vvlIagGiGITP~lsil~~l~~~ 308 (575)
|..|++|.+ ++ +|+.|.|.||+|.|.. + ....++++|||||+||||+++|+++++..
T Consensus 715 ~gG~~S~~L~~-L~----------vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~ 783 (888)
T PLN02252 715 NGGLMSQYLDS-LP----------IGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD 783 (888)
T ss_pred CCCchhhHHhc-CC----------CCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc
Confidence 889999954 44 6999999999998632 1 11347899999999999999999999864
Q ss_pred hccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCC-CCcchhhhhhchhhhhhhhccC-CC
Q 008159 309 QSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE-QSSVTVREVLNDLSLVRAVRFG-TQ 386 (575)
Q Consensus 309 ~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~-~~~~~~~g~~~~~~~~~~~~~~-~~ 386 (575)
. ....+++|+|++|+.+++.+.++|.++..+. ..++++.+.+|+++ ..+.+.+|++++....+..... +.
T Consensus 784 ~-----~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~---p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~ 855 (888)
T PLN02252 784 P-----EDKTEMSLVYANRTEDDILLREELDRWAAEH---PDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDE 855 (888)
T ss_pred c-----CCCCcEEEEEEECCHHHhhHHHHHHHHHHhC---CCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCC
Confidence 2 1246899999999999999999998764321 25788888888754 4456677888876554443222 34
Q ss_pred ceeEEecCCchHHHH-HHHHHHHH
Q 008159 387 SNYAVNGLESLIWMA-ALVGITSI 409 (575)
Q Consensus 387 ~~~~vcGp~~~~~~~-~v~~~~~~ 409 (575)
..+|+|||++ |++ ++...+..
T Consensus 856 ~~vyiCGPp~--Mi~~av~~~L~~ 877 (888)
T PLN02252 856 TLALMCGPPP--MIEFACQPNLEK 877 (888)
T ss_pred eEEEEeCCHH--HHHHHHHHHHHH
Confidence 5689999999 998 46666665
No 66
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.91 E-value=2e-23 Score=204.90 Aligned_cols=208 Identities=18% Similarity=0.211 Sum_probs=173.3
Q ss_pred ceeEEEEEEecCCeEEEEEecC---CCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe--CCCccHHH
Q 008159 173 ETCILSARVFPSKAIELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSL 247 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~---~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~T~~L 247 (575)
..++++.+.++.|+-.+.|..| ..+....|||+++..|..+....||||..|.+. +.+++++.||. .|..|++|
T Consensus 53 ~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~-~~g~~~l~VK~Y~~G~mS~~l 131 (286)
T KOG0534|consen 53 PFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDD-DKGYFDLVVKVYPKGKMSQHL 131 (286)
T ss_pred EEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCcc-ccceEEEEEEeccCCcccHHH
Confidence 4567788888888877776655 257889999999999998888999999999975 35799999998 89999999
Q ss_pred HHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeC
Q 008159 248 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 327 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r 327 (575)
.++. .|+.|.+.||.|.+..+...++++.|||||+||||+++++++++... ....++.|+|+++
T Consensus 132 ~~Lk-----------iGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~-----~d~tki~lly~N~ 195 (286)
T KOG0534|consen 132 DSLK-----------IGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDP-----EDTTKISLLYANK 195 (286)
T ss_pred hcCC-----------CCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCC-----CCCcEEEEEEecC
Confidence 7653 59999999999998766557899999999999999999999998753 2357899999999
Q ss_pred CcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCC--ceeEEecCCchHHHHH
Q 008159 328 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQ--SNYAVNGLESLIWMAA 402 (575)
Q Consensus 328 ~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~vcGp~~~~~~~~ 402 (575)
+.+|+.+.+++.++..+. ..++++++++++++..+.+..|++++..+..++..... ..+++|||++ |++.
T Consensus 196 te~DILlr~eL~~la~~~---p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~--m~~~ 267 (286)
T KOG0534|consen 196 TEDDILLREELEELASKY---PERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPP--MING 267 (286)
T ss_pred CccccchHHHHHHHHhhC---cceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHH--HHhH
Confidence 999999999998875432 23899999999998778889999998887776544333 5678899999 9974
No 67
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.89 E-value=2e-22 Score=198.27 Aligned_cols=194 Identities=10% Similarity=0.059 Sum_probs=142.8
Q ss_pred EEEEEEecCCeEEEEEecCCC---CcccCCeEEEEEeCCCC-------------------CCccccCccccCCCCCCCcE
Q 008159 176 ILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSIS-------------------KFQWHSFSITSSSSVDDQTM 233 (575)
Q Consensus 176 v~~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~~-------------------~~~~hpfSI~s~p~~~~~~l 233 (575)
|++++.+++++++|++..+.. ..|.||||+.|.+|..+ +..+|+|||++.+. +++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l 79 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGEL 79 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEE
Confidence 357788899999999987753 68999999999997643 46789999999875 57889
Q ss_pred EEEEEeC---CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhc
Q 008159 234 SLIVKCD---GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQS 310 (575)
Q Consensus 234 ~l~Ik~~---G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~ 310 (575)
+|.||.. |..|+++. .++ +|+.+.+.||+|.+..+. ..+++||||||+||||+++|++++...
T Consensus 80 ~~~v~~~~~~G~~s~~l~-~l~----------~Gd~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~-- 145 (235)
T cd06193 80 DIDFVLHGDEGPASRWAA-SAQ----------PGDTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD-- 145 (235)
T ss_pred EEEEEeCCCCCchHHHHh-hCC----------CCCEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC--
Confidence 9999874 77899986 444 799999999999987643 567899999999999999999987542
Q ss_pred cCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeE
Q 008159 311 NRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYA 390 (575)
Q Consensus 311 ~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 390 (575)
.+++++|++|+.+++..+++ ..+++++...+.+++ .+..+.. .........+...+|
T Consensus 146 -------~~~~~~~~~~~~~d~~~l~~-----------~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~vy 202 (235)
T cd06193 146 -------ARGTALIEVPDAADEQPLPA-----------PAGVEVTWLHRGGAE--AGELALL---AVRALAPPAGDGYVW 202 (235)
T ss_pred -------CeEEEEEEECCHHHccccCC-----------CCCcEEEEEeCCCCC--cchhHHH---HHhcccCCCCCeEEE
Confidence 57999999999866533221 124566655443332 1222221 111111112346799
Q ss_pred EecCCchHHHHHHHHHHHH
Q 008159 391 VNGLESLIWMAALVGITSI 409 (575)
Q Consensus 391 vcGp~~~~~~~~v~~~~~~ 409 (575)
+|||.+ |++++++.+..
T Consensus 203 icGp~~--mv~~v~~~l~~ 219 (235)
T cd06193 203 IAGEAG--AVRALRRHLRE 219 (235)
T ss_pred EEccHH--HHHHHHHHHHH
Confidence 999999 99999988765
No 68
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.89 E-value=2.6e-22 Score=237.05 Aligned_cols=220 Identities=13% Similarity=0.102 Sum_probs=164.9
Q ss_pred ceeEEEEE---EecCCeEEEEEecCC---CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe-CCCccH
Q 008159 173 ETCILSAR---VFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC-DGEWTS 245 (575)
Q Consensus 173 ~~~v~~~~---~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~-~G~~T~ 245 (575)
++++.+++ ..+.++..++|..|. .+.|+|||||.|+++..+....|+||++|.|. +++.++|+||. .|..|+
T Consensus 916 ~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~~~G~~S~ 994 (1167)
T PTZ00306 916 TVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARGDKGTLKE 994 (1167)
T ss_pred EEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEcCCChhHH
Confidence 35566665 346787777776553 35799999999998755545679999999986 56789999998 688999
Q ss_pred HHHHHHHhcccCCcccCcceeEEEeCCCCCC----------CCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCC
Q 008159 246 SLYQMIHAELDSDADQMRCIPVAIEGPYGPA----------TMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYR 315 (575)
Q Consensus 246 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~----------~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~ 315 (575)
+|. .++ +|+.|.|.||+|.+ ..+....++++||||||||||++||+++++.+.. ..
T Consensus 995 ~L~-~l~----------~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~---~~ 1060 (1167)
T PTZ00306 995 WIS-ALR----------PGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY---VD 1060 (1167)
T ss_pred HHh-hCC----------CCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc---cC
Confidence 995 454 69999999998832 2222345789999999999999999999886420 01
Q ss_pred CCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccC-CCceeEEecC
Q 008159 316 FPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-TQSNYAVNGL 394 (575)
Q Consensus 316 ~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~vcGp 394 (575)
..++++|+|++|+.+++.|.++|.++..+. +.++++++.+++++..+.+..|++++..+.+.+... ....+|+|||
T Consensus 1061 ~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~---~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP 1137 (1167)
T PTZ00306 1061 SIESIRLIYAAEDVSELTYRELLESYRKEN---PGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGP 1137 (1167)
T ss_pred CCceEEEEEEeCCHHHhhHHHHHHHHHHHC---CCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCC
Confidence 236899999999999999999998764321 236888888887665555567888765544443222 3457999999
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 008159 395 ESLIWMAALVGITSILFVIF 414 (575)
Q Consensus 395 ~~~~~~~~v~~~~~~~~~~~ 414 (575)
++ |++++...+.. .|+
T Consensus 1138 ~~--mv~~v~~~L~~--~G~ 1153 (1167)
T PTZ00306 1138 PV--MQRAVKADLLA--LGY 1153 (1167)
T ss_pred HH--HHHHHHHHHHH--cCC
Confidence 99 99999998877 455
No 69
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.84 E-value=1.3e-20 Score=173.35 Aligned_cols=79 Identities=29% Similarity=0.540 Sum_probs=58.3
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCC
Q 008159 283 YDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 362 (575)
Q Consensus 283 ~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~ 362 (575)
|+++||||||+||||++|++++++.... ++....++++|+|++|+.+++.|+.++++.+...... .++++++|+|+++
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~-~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~-~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQN-RGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRL-GNVEVHIYVTRES 78 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHH-TT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHH-TSEEEEEEETT--
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhc-cccccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc-ccceEEEEEcCCc
Confidence 6899999999999999999999998753 2233468999999999999999998766554443322 5799999999987
Q ss_pred C
Q 008159 363 Q 363 (575)
Q Consensus 363 ~ 363 (575)
.
T Consensus 79 ~ 79 (156)
T PF08030_consen 79 S 79 (156)
T ss_dssp -
T ss_pred c
Confidence 5
No 70
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.84 E-value=1.5e-20 Score=195.87 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=141.3
Q ss_pred CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe----------CCCccHHHHHHHHhcccCCcccCcce
Q 008159 196 GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCI 265 (575)
Q Consensus 196 ~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~ 265 (575)
..++.||||+.+..|. ..|+|||+|+|...++.++++|+. .|..|++|.+..+ +|+
T Consensus 129 ~~~~~~gq~l~l~~~~----~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~----------~Gd 194 (360)
T cd06199 129 PARLTAEELLDLLRPL----QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLK----------EGD 194 (360)
T ss_pred CCCCCHHHHHHhCcCC----CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCC----------CCC
Confidence 4678999999997542 679999999996446789999884 4889999998765 699
Q ss_pred eEEEeCC-CCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHHHHhh
Q 008159 266 PVAIEGP-YGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLS 343 (575)
Q Consensus 266 ~v~v~GP-yG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~-~~l~~~~~l~~~l~ 343 (575)
.+.+.+| .|.|.++.....+++|||||+||||++||+++..... ...++.|+|++|+. +|+.|.+++.++..
T Consensus 195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~D~~y~~el~~~~~ 268 (360)
T cd06199 195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG------AKGKNWLFFGERHFATDFLYQDELQQWLK 268 (360)
T ss_pred EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc------CCCcEEEEEcCCCCccchhHHHHHHHHHH
Confidence 9999974 4578765445679999999999999999999887542 24679999999997 79999999987642
Q ss_pred hccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCC-chHHHHHHHHHHHH
Q 008159 344 NQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLE-SLIWMAALVGITSI 409 (575)
Q Consensus 344 ~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~-~~~~~~~v~~~~~~ 409 (575)
....++++..+||++......++.+.+....-.....+...+|+|||. . |++++.+++..
T Consensus 269 ----~~~~~~~~~a~Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~--M~~~V~~~L~~ 329 (360)
T cd06199 269 ----DGVLTRLDTAFSRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKR--MAKDVDAALLD 329 (360)
T ss_pred ----cCCCeEEEEEEccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCcc--ccHHHHHHHHH
Confidence 234567888899876544455555543321110012234789999999 7 88898888766
No 71
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.82 E-value=5.7e-20 Score=202.83 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=141.2
Q ss_pred CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe----------CCCccHHHHHHHHhcccCCcccCccee
Q 008159 197 LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIP 266 (575)
Q Consensus 197 ~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~~ 266 (575)
.++.||||+.+..| .+.|+|||+|+|...++.++|+|+. .|..|++|.+.++ +|++
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~----------~Gd~ 432 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLK----------EGDT 432 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCC----------CCCE
Confidence 67899999999865 3779999999986556789999984 4999999998776 6999
Q ss_pred EEEeCCC-CCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC-cchhhhHHhHHHHhhh
Q 008159 267 VAIEGPY-GPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSN 344 (575)
Q Consensus 267 v~v~GPy-G~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~-~~~l~~~~~l~~~l~~ 344 (575)
+.|.+|. |.|.++.+...+++|||+|+|||||+|+++++...+ ...+++|+|++|+ .+|+.|.+|+.+...+
T Consensus 433 v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------~~g~~~LffG~R~~~~D~ly~~El~~~~~~ 506 (597)
T TIGR01931 433 VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG------AKGKNWLFFGNPHFTTDFLYQVEWQNYLKK 506 (597)
T ss_pred EEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc------CCCCEEEEECCCCCCcchhHHHHHHHHHHc
Confidence 9999855 567665445678999999999999999999887653 2467999999999 7799999999876432
Q ss_pred ccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEec-CCchHHHHHHHHHHHH
Q 008159 345 QQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNG-LESLIWMAALVGITSI 409 (575)
Q Consensus 345 ~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcG-p~~~~~~~~v~~~~~~ 409 (575)
....++...+||+++.....++++.+....-.....+...+|+|| |.. |++++.+.+..
T Consensus 507 ----~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~--M~~~V~~~L~~ 566 (597)
T TIGR01931 507 ----GVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKK--MAKDVHQALLD 566 (597)
T ss_pred ----CCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCcc--ccHHHHHHHHH
Confidence 233456777888654444455555433211111122457899999 778 99999888776
No 72
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.80 E-value=4.9e-19 Score=186.46 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=133.9
Q ss_pred ccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe------------CCCccHHHHHHHHhcccCCcccCccee
Q 008159 199 FTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC------------DGEWTSSLYQMIHAELDSDADQMRCIP 266 (575)
Q Consensus 199 ~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~------------~G~~T~~L~~~~~~~~~~~~~~~~g~~ 266 (575)
...||++.+. |. .+.|+|||+|+|..+++.+++.|+. .|..|++|.+ ++ +|+.
T Consensus 147 ~~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~ 211 (384)
T cd06206 147 LPLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS-LR----------PGDS 211 (384)
T ss_pred CCHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh-CC----------CCCe
Confidence 4458888886 43 3779999999986445666666654 5778999964 44 5888
Q ss_pred EEE--eCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHHHHhh
Q 008159 267 VAI--EGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLS 343 (575)
Q Consensus 267 v~v--~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~-~~l~~~~~l~~~l~ 343 (575)
+.+ .||+|.|..+....++++|||||+||||++|++++....... .....++.|+|++|+. +++.|.+++.++..
T Consensus 212 v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~--~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~ 289 (384)
T cd06206 212 IHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQ--GRKLAPALLFFGCRHPDHDDLYRDELEEWEA 289 (384)
T ss_pred EEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhc--CCCcCCEEEEEeCCCCCcccchHHHHHHHHH
Confidence 774 699999976655568999999999999999999987653211 1123579999999999 89999999987642
Q ss_pred hccCCCceeEEEEEEeCCCCC-cchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 344 NQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 344 ~~~~~~~~l~~~~~vT~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
..++++.+.+|+++.. ....++.+.+....-.....+...+|+|||.+ |++++.+.+..
T Consensus 290 -----~~~~~l~~a~Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~--M~~~v~~~L~~ 349 (384)
T cd06206 290 -----AGVVSVRRAYSRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDGR--MAPGVREVLKR 349 (384)
T ss_pred -----CCCeEEEEEecccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCCc--hHHHHHHHHHH
Confidence 2467888888887543 23334444322111000122457799999999 99999998876
No 73
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.80 E-value=7.9e-19 Score=184.74 Aligned_cols=177 Identities=16% Similarity=0.112 Sum_probs=130.2
Q ss_pred CCccccCccccCCCCCCCcEEEEEEeC-----------CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCC
Q 008159 214 KFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLR 282 (575)
Q Consensus 214 ~~~~hpfSI~s~p~~~~~~l~l~Ik~~-----------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~ 282 (575)
+.+.|+|||+|+|..+++.++|+||.. |-.|++|.+ ++ +|+.+.+.||+|.|.++.+.
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~~p~g~F~lp~~~ 229 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG-LK----------VGQRVTVFIKKSSFKLPKDP 229 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh-cC----------CCCEEEEEEECCcccCCCCC
Confidence 458899999999964467899999853 888999975 44 59999999999998765444
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHHHHhhhccCCCceeEEEEEEeCC
Q 008159 283 YDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQE 361 (575)
Q Consensus 283 ~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~ 361 (575)
..+++|||||+|||||+|++++...... ......++.|+|++|+. +++.|.+++.++.. ....+++++.+|++
T Consensus 230 ~~plImIa~GtGIAP~rs~l~~~~~~~~--~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~----~~~~~~~~~a~Srd 303 (382)
T cd06207 230 KKPIIMVGPGTGLAPFRAFLQERAALLA--QGPEIGPVLLYFGCRHEDKDYLYKEELEEYEK----SGVLTTLGTAFSRD 303 (382)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHHHhh--cCccCCCEEEEECCCCCCccccHHHHHHHHHh----CCCCceEEEEecCC
Confidence 6789999999999999999998765311 11134789999999998 89999999987643 23456788888987
Q ss_pred CCCcchhhhhhchhhhhhhhccCCC-ceeEEecCC-chHHHHHHHHHHHH
Q 008159 362 EQSSVTVREVLNDLSLVRAVRFGTQ-SNYAVNGLE-SLIWMAALVGITSI 409 (575)
Q Consensus 362 ~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~vcGp~-~~~~~~~v~~~~~~ 409 (575)
++.....++.+.+....-.....+. ..+|+|||. . |++++.+.+..
T Consensus 304 ~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~--M~~~V~~~L~~ 351 (382)
T cd06207 304 QPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWK--MPPDVQEAFEE 351 (382)
T ss_pred CCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCccc--ccHHHHHHHHH
Confidence 7644444555443211100011222 379999998 5 88888888766
No 74
>PRK06214 sulfite reductase; Provisional
Probab=99.78 E-value=1.5e-18 Score=186.73 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=126.5
Q ss_pred CCCccccCccccCCCCCCCcEEEEEEe----------CCCccHHHHHHHHhcccCCcccCcceeEEEe--CCCCCCCCCc
Q 008159 213 SKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIE--GPYGPATMDF 280 (575)
Q Consensus 213 ~~~~~hpfSI~s~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~--GPyG~~~~~~ 280 (575)
.+.+.|+|||+|+|..+++.++|+||. .|..|++|.+.++ +|+.+.|. +|+| |.++.
T Consensus 312 p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~----------~Gd~V~v~i~~~~g-F~lp~ 380 (530)
T PRK06214 312 DPLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLA----------PGTRVRVYVQKAHG-FALPA 380 (530)
T ss_pred CCCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCC----------CCCEEEEEecCCCC-CccCC
Confidence 345889999999996456889999985 3888999987766 68887764 5666 76654
Q ss_pred CCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC-cchhhhHHhHHHHhhhccCCCceeEEEEEEe
Q 008159 281 LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSNQQSKKWHLTLKVFVT 359 (575)
Q Consensus 281 ~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~-~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT 359 (575)
+...++||||+|+|||||+||+++..... ...+++|+|++|+ .+|+.|.+++.++..+ ....++.+..|
T Consensus 381 ~~~~PiImIg~GTGIAPfrsfLq~r~~~~------~~g~~~LffG~R~~~~D~ly~dEL~~l~~~----g~l~~l~~afS 450 (530)
T PRK06214 381 DPNTPIIMVGPGTGIAPFRAFLHERAATK------APGRNWLFFGHQRSATDFFYEDELNGLKAA----GVLTRLSLAWS 450 (530)
T ss_pred CCCCCEEEEcCCeeHHHHHHHHHHHHHhc------CCCCeEEEEEecCChhhhHHHHHHHHHHHh----CCceEEEEEEe
Confidence 45578999999999999999999876542 2367899999965 6788999999876432 23456777888
Q ss_pred CCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHH-HHHHHHHHH
Q 008159 360 QEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWM-AALVGITSI 409 (575)
Q Consensus 360 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~-~~v~~~~~~ 409 (575)
|+++.....++++.+....-.....+...+|+|||.+ +| +++.+.+..
T Consensus 451 Rd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~--~M~~~V~~~L~~ 499 (530)
T PRK06214 451 RDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAK--RMAKDVERALVD 499 (530)
T ss_pred cCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChH--HHHHHHHHHHHH
Confidence 8765445566666543221111223457899999987 66 788877666
No 75
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.76 E-value=4e-18 Score=187.22 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=140.6
Q ss_pred CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEe----------CCCccHHHHHHHHhcccCCcccCccee
Q 008159 197 LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIP 266 (575)
Q Consensus 197 ~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~~ 266 (575)
.++.||||+.+..|. +.|+|||+|+|...++.+.|+|+. .|..|.+|.+.++ +|++
T Consensus 370 ~~~~~~q~l~ll~~l----~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~----------~Gd~ 435 (600)
T PRK10953 370 AQLDAEQLIGLLRPL----TPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLE----------EEGE 435 (600)
T ss_pred CCCCHHHHHHhCCCC----CCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCC----------CCCE
Confidence 478999999987653 679999999996556777877632 5777899987666 6999
Q ss_pred EEEeCCCC-CCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC-cchhhhHHhHHHHhhh
Q 008159 267 VAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSN 344 (575)
Q Consensus 267 v~v~GPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~-~~~l~~~~~l~~~l~~ 344 (575)
+.|.||.| .|.++.+...++||||+|+|||||++++++....+ ...+++|+|++|+ ..|+.|.+|+.++..+
T Consensus 436 v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------~~~~~~LffG~R~~~~D~lY~~El~~~~~~ 509 (600)
T PRK10953 436 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG------APGKNWLFFGNPHFTEDFLYQVEWQRYVKE 509 (600)
T ss_pred EEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC------CCCCeEEEeeccCCccchhHHHHHHHHHHc
Confidence 99999875 67665555679999999999999999999887653 2467999999998 7899999999887533
Q ss_pred ccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 345 QQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 345 ~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
. ...+++...+|+++.....+.++.+....-..+..+...+|+||+.. .|.++|.+++..
T Consensus 510 g----~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~-~M~~~V~~~L~~ 569 (600)
T PRK10953 510 G----LLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDAN-RMAKDVEQALLE 569 (600)
T ss_pred C----CcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCc-cchHHHHHHHHH
Confidence 1 22357788899876556666666654332112234567899999975 144778777665
No 76
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.76 E-value=1.3e-17 Score=176.10 Aligned_cols=184 Identities=15% Similarity=0.166 Sum_probs=129.1
Q ss_pred CCCccccCccccCCCCCCCcEEEEEEe-----CCCccHHHHHHHHhcccCCcccCcceeEEEeC-CCCCCCCCcC-CCCe
Q 008159 213 SKFQWHSFSITSSSSVDDQTMSLIVKC-----DGEWTSSLYQMIHAELDSDADQMRCIPVAIEG-PYGPATMDFL-RYDS 285 (575)
Q Consensus 213 ~~~~~hpfSI~s~p~~~~~~l~l~Ik~-----~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~G-PyG~~~~~~~-~~~~ 285 (575)
.+.+.|+|||+|+|...++.++++|+. .|..|++|.+..++. ..+|+.+.+.| |.|.|.++.. ...+
T Consensus 170 p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~------~~~G~~v~i~~~~~g~F~lp~~~~~~p 243 (398)
T cd06203 170 PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA------SSHGVKVPFYLRSSSRFRLPPDDLRRP 243 (398)
T ss_pred ccCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh------cCCCCEEEEEEecCCCcCCCCcCCCCC
Confidence 345789999999996445789999887 278999998876311 11388999998 6788876544 4578
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCC
Q 008159 286 LLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS 364 (575)
Q Consensus 286 vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~ 364 (575)
++|||+|+|||||+|++++..............++.|+|++|+. +|+.|.+|+.++..+ ....++.+.+||+++.
T Consensus 244 iImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~----~~~~~~~~a~SRd~~~ 319 (398)
T cd06203 244 IIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEE----GILTRLIVAFSRDEND 319 (398)
T ss_pred EEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHc----CCCceEEEEECCCCCC
Confidence 99999999999999999987653110011234689999999999 799999999876432 2445678888987653
Q ss_pred cchhhhhhchhhhhhhh---c--cCCCceeEEecCC-chHHHHHHHHHHHH
Q 008159 365 SVTVREVLNDLSLVRAV---R--FGTQSNYAVNGLE-SLIWMAALVGITSI 409 (575)
Q Consensus 365 ~~~~~g~~~~~~~~~~~---~--~~~~~~~~vcGp~-~~~~~~~v~~~~~~ 409 (575)
. +.++++++....... . ......+|+|||. . |.+++.+++..
T Consensus 320 ~-g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~--M~~~V~~~l~~ 367 (398)
T cd06203 320 G-STPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKG--MAKDVRDTFVD 367 (398)
T ss_pred C-CCceecchHHHhCHHHHHHHHhcCCcEEEEECCcch--hhHHHHHHHHH
Confidence 1 234555543322211 1 1245779999985 6 77888877665
No 77
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.75 E-value=1.1e-17 Score=147.76 Aligned_cols=121 Identities=40% Similarity=0.632 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhh-HHHHHHhhcccch
Q 008159 19 FGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQ-DEMWRWQKTGRIY 97 (575)
Q Consensus 19 ~G~~a~~~~~ll~l~~~R~~~~~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 97 (575)
+|.+|..+|++++++++|++++...+|+++|+.+.+|||+|+++++++++|++.++..+....... .........+..+
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYN 80 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHH
Confidence 589999999999999999999999999999999999999999999999999999887654322100 1111122234557
Q ss_pred hHHHHHHHHHHHHHHHcchHHh-hhhhHHHHHHHHHHHHHHHH
Q 008159 98 LAGEIALVTGLVMWITSLPQIR-RKKFEFFYYTHHLYIIFLIF 139 (575)
Q Consensus 98 ~~G~i~~~~~~~~~~~S~~~iR-r~~ye~F~~~H~l~~~~~~~ 139 (575)
.+|.++++++++|+++|.+++| |+.||.|+++|+++++++++
T Consensus 81 ~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~~~~~~~~l 123 (125)
T PF01794_consen 81 LTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHILFYIAFLL 123 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 88999999999998766544
No 78
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.75 E-value=1.9e-17 Score=175.78 Aligned_cols=189 Identities=15% Similarity=0.107 Sum_probs=132.5
Q ss_pred CCccccCccccCCCCCCCcEEEEEEeC-----------CCccHHHHHHHHhc----------ccCCcccCcceeEEEeCC
Q 008159 214 KFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQMIHAE----------LDSDADQMRCIPVAIEGP 272 (575)
Q Consensus 214 ~~~~hpfSI~s~p~~~~~~l~l~Ik~~-----------G~~T~~L~~~~~~~----------~~~~~~~~~g~~v~v~GP 272 (575)
+.+.|+|||+|+|..+++.++|+|+.. |-.|++|.+..+.. +....+..+|+.+.+..|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 458899999999975667899988751 88899999876411 000111225889999999
Q ss_pred CCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCc-chhhhHHhHHHHhhhccCCCce
Q 008159 273 YGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWH 351 (575)
Q Consensus 273 yG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~-~~l~~~~~l~~~l~~~~~~~~~ 351 (575)
.|.|.++.+...++||||||+||||++||+++....... .....++.|+|++|+. +++.|.+++.++.. ...+
T Consensus 255 ~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~--~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~----~~~~ 328 (416)
T cd06204 255 RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKES--GKKVGPTLLFFGCRHPDEDFIYKDELEEYAK----LGGL 328 (416)
T ss_pred cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhc--cCccCCEEEEEcCCCCCcccchHHHHHHHHH----cCCc
Confidence 999876655568999999999999999999986543211 1123689999999998 79999999987643 2356
Q ss_pred eEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 352 LTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 352 l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
+++...+||+++.....++++.+....-.....+...+|+|||.+ .|++++.+.+..
T Consensus 329 ~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~-~M~~~V~~~L~~ 385 (416)
T cd06204 329 LELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAK-NMARDVEKTLLE 385 (416)
T ss_pred eEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcc-cchHHHHHHHHH
Confidence 788888888765344556666532211100122347799999984 166888877666
No 79
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.74 E-value=8.5e-20 Score=155.71 Aligned_cols=98 Identities=37% Similarity=0.759 Sum_probs=7.1
Q ss_pred eeEEEEEEecCCeEEEEEecCCC-CcccCCeEEEEEeCCCC--CCccccCccccCCCCCCCcEEEEEEeCCCccHHHHHH
Q 008159 174 TCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQM 250 (575)
Q Consensus 174 ~~v~~~~~~~~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~~--~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~~~ 250 (575)
+++.+++.+++++++++++++.. ++|+||||++|++|..+ .+|||||||+|+|. ++.++++||..|+||++|++.
T Consensus 4 ~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 4 VRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeCCCchHHHHHH
Confidence 45678889999999999999876 99999999999999999 45999999999984 789999999999999999998
Q ss_pred HHhcccCCcccCcceeEEEeCCCCCC
Q 008159 251 IHAELDSDADQMRCIPVAIEGPYGPA 276 (575)
Q Consensus 251 ~~~~~~~~~~~~~g~~v~v~GPyG~~ 276 (575)
+.+.. .+...+.++.||||||.+
T Consensus 82 ~~~~~---~~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESP---SKQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ------------------TTSTTSHH
T ss_pred Hhhhc---ccCCCceEEEEECCCCCC
Confidence 75321 111245689999999974
No 80
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.72 E-value=4.9e-17 Score=154.46 Aligned_cols=198 Identities=15% Similarity=0.234 Sum_probs=151.8
Q ss_pred EEEEecCCCCcccCCeEEEEEeCCC--------------CC---------------CccccCccccCCCCCCCcEEEEEE
Q 008159 188 ELILPKHAGLKFTPTSVIFMKIPSI--------------SK---------------FQWHSFSITSSSSVDDQTMSLIVK 238 (575)
Q Consensus 188 ~l~~~~~~~~~~~pGQ~v~l~~p~~--------------~~---------------~~~hpfSI~s~p~~~~~~l~l~Ik 238 (575)
.|.++..+...|+||-|+.|.+|.- +. -..|.||++|-|. +.+.+.+-||
T Consensus 153 ~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPe-E~giI~~NvR 231 (410)
T COG2871 153 KLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPE-EKGIIKLNVR 231 (410)
T ss_pred eeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChh-hcCeEEEEEE
Confidence 3444444578999999999998742 00 1248999999997 6778888888
Q ss_pred e-----------CCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHH
Q 008159 239 C-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIAS 307 (575)
Q Consensus 239 ~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~ 307 (575)
. -|..|.+++.+. +||++.|+||||.|+.. +....+|+|+||.|.+|+.|.+-+.+.
T Consensus 232 IAtPPp~~~~~PpG~mSSyi~sLK-----------pGDKvtisGPfGEfFaK-dtdaemvFigGGAGmapmRSHIfDqL~ 299 (410)
T COG2871 232 IATPPPRNPDAPPGQMSSYIWSLK-----------PGDKVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLK 299 (410)
T ss_pred eccCCCCCCCCCccceeeeEEeec-----------CCCeEEEeccchhhhhc-cCCCceEEEecCcCcCchHHHHHHHHH
Confidence 5 255666666543 59999999999998643 455789999999999999999988877
Q ss_pred hhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCC--Ccchhhhhhchhhhhhhhcc--
Q 008159 308 AQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVREVLNDLSLVRAVRF-- 383 (575)
Q Consensus 308 ~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~--~~~~~~g~~~~~~~~~~~~~-- 383 (575)
+.. ..+++.+.|++|+..+..|.+++.++.. +.+|++.|+.++.+.. .|.+..|++..+..+..+..
T Consensus 300 rlh-----SkRkis~WYGARS~rE~fY~Ed~d~L~a----e~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk~h~ 370 (410)
T COG2871 300 RLH-----SKRKISFWYGARSLREMFYQEDFDQLQA----ENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLKDHE 370 (410)
T ss_pred hhc-----ccceeeeeeccchHHHhHHHHHHHHHHh----hCCCcEEEEEecCCCCcCCcccchhHHHHHHHhhhhhcCC
Confidence 632 3588999999999999999999988632 4589999999998764 45667788877765555433
Q ss_pred -CCCceeEEecCCchHHHHHHHHHHHH
Q 008159 384 -GTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 384 -~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
.++-.||+|||+- |-+++..++..
T Consensus 371 aPEDceyYmCGPp~--mNasvikmL~d 395 (410)
T COG2871 371 APEDCEYYMCGPPL--MNASVIKMLKD 395 (410)
T ss_pred CchheeEEeeCcch--hhHHHHHHHHh
Confidence 2346799999987 88888887766
No 81
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.71 E-value=1.6e-16 Score=168.14 Aligned_cols=178 Identities=15% Similarity=0.073 Sum_probs=122.4
Q ss_pred CccccCccccCCCCCCCcEEEEEEe-------------CCCccHHHHHHHHhcccCCcccCcceeEEEeCCC-CCCCCCc
Q 008159 215 FQWHSFSITSSSSVDDQTMSLIVKC-------------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPY-GPATMDF 280 (575)
Q Consensus 215 ~~~hpfSI~s~p~~~~~~l~l~Ik~-------------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPy-G~~~~~~ 280 (575)
.+.|+|||+|+|...++.++++|+. .|..|++|.+ ++ +|+.+.+.+|. |.|.++.
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~~~~~~~F~lp~ 243 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNG-LT----------PGDTVPCFVRSAPSFHLPE 243 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHh-CC----------CCCEEEEEEeeCCccCCCC
Confidence 4789999999986445667777654 3788999954 44 58999887754 4566554
Q ss_pred CCCCeEEEEEeCCChhhHHHHHHHHHHhhc--cCCCCCCceEEEEEEeCCc-chhhhHHhHHHHhhhccCCCceeEEEEE
Q 008159 281 LRYDSLLLVAGGIGITPFLSILQEIASAQS--NRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVF 357 (575)
Q Consensus 281 ~~~~~vvlIagGiGITP~lsil~~l~~~~~--~~~~~~~~~v~li~~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~~~~~ 357 (575)
+...++||||+|+|||||+|++++...... ........++.|+|++|+. +|..|.+|+.++.. .....+++..
T Consensus 244 ~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~----~~~~~~~~~a 319 (406)
T cd06202 244 DPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKN----KGVLTEVYTA 319 (406)
T ss_pred CCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHH----cCCCceEEEE
Confidence 455799999999999999999998653210 0111134789999999999 88999999887642 2345568888
Q ss_pred EeCCCCC-cchhhhhhchhhhhhh-hccCCCceeEEecCCchHHHHHHHHHHHH
Q 008159 358 VTQEEQS-SVTVREVLNDLSLVRA-VRFGTQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 358 vT~~~~~-~~~~~g~~~~~~~~~~-~~~~~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
+||+++. ....+..+.+....-. ........+|+|||.+ |++++.+.+..
T Consensus 320 ~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~--M~~~V~~~L~~ 371 (406)
T cd06202 320 LSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDVT--MAEDVSQTIQR 371 (406)
T ss_pred EcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCc--hHHHHHHHHHH
Confidence 8987642 2233333332211100 0013457899999997 99999988766
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.66 E-value=6.8e-16 Score=173.16 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=97.1
Q ss_pred ceeEEEEEEecCCeEEEEEecCC-CCcccCCeEEEEEeCCCC--CC-ccccCccccCCCCCCCcEEEEEEeCCCccHHHH
Q 008159 173 ETCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSIS--KF-QWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLY 248 (575)
Q Consensus 173 ~~~v~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~~--~~-~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~~L~ 248 (575)
..+|++++.++++++++++..|. .-.++||||+.|++++.+ .+ +.+||||++.+. +.+.+++.++..|..|+.|.
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEEChHHHHHh
Confidence 46789999999999999998875 346899999999986433 22 456899999865 56789999999999999997
Q ss_pred HHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 008159 249 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASA 308 (575)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~ 308 (575)
++. +|+.+.+.||+|.++. ...++++++||||+|++| +++.+.+.
T Consensus 871 ~l~-----------~Gd~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk~~ 915 (1028)
T PRK06567 871 TLS-----------ENEKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLKEN 915 (1028)
T ss_pred cCC-----------CCCEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHHHC
Confidence 643 5999999999998753 334679999999999997 55666543
No 83
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.57 E-value=1.2e-14 Score=125.01 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=79.4
Q ss_pred EEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcch
Q 008159 288 LVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVT 367 (575)
Q Consensus 288 lIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~ 367 (575)
|||||+||||++||+++++..+ ...+++|+|++|+.+++.+.+++.++..... .++.+... .+.+..+.+
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~---~~~~~~~~-~~~~~~~~~ 70 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN------DNRKVTLFYGARTPEDLLFRDELEALAQEYP---NRFHVVYV-SSPDDGWDG 70 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT------CTSEEEEEEEESSGGGSTTHHHHHHHHHHST---TCEEEEEE-TTTTSSTTS
T ss_pred CeecceeHHHHHHHHHHHHHhC------CCCCEEEEEEEcccccccchhHHHHHHhhcc---cccccccc-cccccccCC
Confidence 7999999999999999999763 3589999999999999999999988753321 23444433 444444566
Q ss_pred hhhhhchhhhhhhhc---cCCCceeEEecCCchHHHHHHH
Q 008159 368 VREVLNDLSLVRAVR---FGTQSNYAVNGLESLIWMAALV 404 (575)
Q Consensus 368 ~~g~~~~~~~~~~~~---~~~~~~~~vcGp~~~~~~~~v~ 404 (575)
.+|++++....+... ..+...+|+|||++ ||++++
T Consensus 71 ~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~--m~~~v~ 108 (109)
T PF00175_consen 71 FKGRVTDLLLEDLLPEKIDPDDTHVYICGPPP--MMKAVR 108 (109)
T ss_dssp EESSHHHHHHHHHHHHHHCTTTEEEEEEEEHH--HHHHHH
T ss_pred ceeehhHHHHHhhcccccCCCCCEEEEECCHH--HHHHhc
Confidence 778888776544443 34567899999999 999875
No 84
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.48 E-value=6.5e-13 Score=144.12 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=136.9
Q ss_pred CccccCccccCCCCCCCcEEEEEEe----------CCCccHHHHHHHHhcccCCcccCcceeEEEeCCCC-CCCCCcCCC
Q 008159 215 FQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYG-PATMDFLRY 283 (575)
Q Consensus 215 ~~~hpfSI~s~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG-~~~~~~~~~ 283 (575)
+..|-|||+|+|...++.++++|.. .|.-|.+|.+... .|+.+.|-..-+ +|.++.++.
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~----------~g~~i~v~v~~n~nf~lp~~~~ 440 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLE----------EGDTIPVFVQPNKNFRLPEDPE 440 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhc----------CCCeEEEEeccCCccccCCCCC
Confidence 4679999999998767778877764 3667888888776 577888777666 666655555
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCC-cchhhhHHhHHHHhhhccCCCceeEEEEEEeCCC
Q 008159 284 DSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 362 (575)
Q Consensus 284 ~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~-~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~ 362 (575)
.+++|||.|+|||||.+++++....+ ...+..|++++|+ .+|..|.+|+.+... .....++....+|++
T Consensus 441 ~PiIMIG~GTGIAPFRafvq~r~~~~------~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~----~G~~~~l~~AfSRdq 510 (587)
T COG0369 441 TPIIMIGPGTGIAPFRAFVQERAANG------AEGKNWLFFGCRHFTEDFLYQEEWEEYLK----DGVLTRLDLAFSRDQ 510 (587)
T ss_pred CceEEEcCCCCchhHHHHHHHHHhcc------ccCceEEEecCCCCccchhhHHHHHHHHh----cCCceeEEEEEeecC
Confidence 89999999999999999999988764 2347999999999 789999999987532 223678889999999
Q ss_pred CCcchhhhhhchhhhhhhhccCCCceeEEec-CCchHHHHHHHHHHHH
Q 008159 363 QSSVTVREVLNDLSLVRAVRFGTQSNYAVNG-LESLIWMAALVGITSI 409 (575)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcG-p~~~~~~~~v~~~~~~ 409 (575)
.....++.++.+...+-..++.+...+|+|| ... |...|..++..
T Consensus 511 ~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~--Ma~dV~~AL~~ 556 (587)
T COG0369 511 EEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKG--MAKDVEEALLD 556 (587)
T ss_pred CCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCcc--chHHHHHHHHH
Confidence 8888888888876654444555668999999 778 88888888776
No 85
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.47 E-value=2.3e-13 Score=128.74 Aligned_cols=123 Identities=18% Similarity=0.157 Sum_probs=92.3
Q ss_pred eeEEEEEEecCCeEEEEEec-CCC---CcccCCeEEEEEeC--CCCC--CccccCccccCCCCCCCcEEEEEEe--CCCc
Q 008159 174 TCILSARVFPSKAIELILPK-HAG---LKFTPTSVIFMKIP--SISK--FQWHSFSITSSSSVDDQTMSLIVKC--DGEW 243 (575)
Q Consensus 174 ~~v~~~~~~~~~~~~l~~~~-~~~---~~~~pGQ~v~l~~p--~~~~--~~~hpfSI~s~p~~~~~~l~l~Ik~--~G~~ 243 (575)
..+.+....++|+.++.+.. .+. ....|||||.+... ..+. ...+.||.++.. -.+.+++.||+ .|-.
T Consensus 152 F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t--~rN~~R~sVr~~A~G~V 229 (385)
T KOG3378|consen 152 FKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDT--CRNQFRISVRRVAGGVV 229 (385)
T ss_pred eeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhh--hccceeEEEeehhchhh
Confidence 45556666688999988843 222 45789999999863 3332 223445555543 46789999998 6778
Q ss_pred cHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCC---cCCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 008159 244 TSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMD---FLRYDSLLLVAGGIGITPFLSILQEIASA 308 (575)
Q Consensus 244 T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~---~~~~~~vvlIagGiGITP~lsil~~l~~~ 308 (575)
|+.+++.++ .||.+.++.|-|+|... .....++++.|||+||||+++|++..+..
T Consensus 230 S~~~H~~~K----------VGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C 287 (385)
T KOG3378|consen 230 SNFVHDNLK----------VGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC 287 (385)
T ss_pred HHHhhcccc----------ccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc
Confidence 999999887 89999999999999643 22357899999999999999999987754
No 86
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.45 E-value=1.2e-13 Score=116.66 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=77.0
Q ss_pred eeEEEEEEecCCeEEEEEecCC---CCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CCccHHHH
Q 008159 174 TCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 248 (575)
Q Consensus 174 ~~v~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~~T~~L~ 248 (575)
++|++++.+++++..+++..+. .+.|.||||+.|+++..+...+||||++|.|. +++.++|+||.. |..|++|.
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEECTTSHHHHHHH
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEeccCCHHHHHHH
Confidence 5788999999999888886652 36799999999999966666899999999986 677999999996 88999996
Q ss_pred HHHHhcccCCcccCcceeEEEeCCCCCCC
Q 008159 249 QMIHAELDSDADQMRCIPVAIEGPYGPAT 277 (575)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~ 277 (575)
+ ++ +|+.+.++||+|.|.
T Consensus 81 ~-l~----------~Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 81 Q-LK----------PGDEVEIRGPYGNFT 98 (99)
T ss_dssp T-SC----------TTSEEEEEEEESSEE
T ss_pred h-CC----------CCCEEEEEEcccccC
Confidence 5 55 699999999999873
No 87
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.27 E-value=4.5e-11 Score=129.71 Aligned_cols=178 Identities=18% Similarity=0.149 Sum_probs=119.3
Q ss_pred CCccccCccccCCCCCCCcEEEEEEe------C------CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCC--CC
Q 008159 214 KFQWHSFSITSSSSVDDQTMSLIVKC------D------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPAT--MD 279 (575)
Q Consensus 214 ~~~~hpfSI~s~p~~~~~~l~l~Ik~------~------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~--~~ 279 (575)
.++.|+|||+|+|....+.+.+++-. . |--|++|.++. +|+.+-.-+|-+.+. ++
T Consensus 419 ~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~-----------~~~~~~~~~~~~~s~frlp 487 (645)
T KOG1158|consen 419 RLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLK-----------PGEKVPNPVPVGKSMFRLP 487 (645)
T ss_pred cccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcC-----------CccccCcceeecccceecC
Confidence 46889999999987666666555533 2 55677887643 244443334444432 33
Q ss_pred cCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchh-hhHHhHHHHhhhccCCCceeEEEEEE
Q 008159 280 FLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI-CLLNSISPLLSNQQSKKWHLTLKVFV 358 (575)
Q Consensus 280 ~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l-~~~~~l~~~l~~~~~~~~~l~~~~~v 358 (575)
.+...+++|||-|+|||||++++++.......+...... +.|++++|+.++. .|.+|+.... ......++...+
T Consensus 488 ~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~----~~~~l~~l~~A~ 562 (645)
T KOG1158|consen 488 SDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYK----KAGILTRLDVAF 562 (645)
T ss_pred CCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHH----hcCcchhheeee
Confidence 345679999999999999999999988764322212234 8999999998877 7777776642 123456788899
Q ss_pred eCCC-CCcchhhhhhchhhhhhhhcc-CCCceeEEecCC-chHHHHHHHHHHHH
Q 008159 359 TQEE-QSSVTVREVLNDLSLVRAVRF-GTQSNYAVNGLE-SLIWMAALVGITSI 409 (575)
Q Consensus 359 T~~~-~~~~~~~g~~~~~~~~~~~~~-~~~~~~~vcGp~-~~~~~~~v~~~~~~ 409 (575)
+|++ +.....+.++.+....-..-+ .+...+|+||.. + |+..|..++..
T Consensus 563 SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~--Ma~dV~~~L~~ 614 (645)
T KOG1158|consen 563 SREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKG--MAKDVQDALVR 614 (645)
T ss_pred eccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCcc--chHHHHHHHHH
Confidence 9998 545566666655443211112 346889999988 5 77777777655
No 88
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.76 E-value=5.3e-07 Score=85.89 Aligned_cols=125 Identities=22% Similarity=0.121 Sum_probs=92.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHhCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhHHHHHH
Q 008159 11 KYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRW 90 (575)
Q Consensus 11 ~~~~~~~r~G~~a~~~~~ll~l~~~R~~~~~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 90 (575)
+...+...+|..|...|.+.++. +++.++.|. ++...+||++|..+++.+++|...|+...... .. +..+..
T Consensus 39 p~~~~~~~tG~~Al~llll~l~l----~pL~~l~~~--~~l~~~RR~LGl~af~~a~lH~~~y~~~~~~~-~~-~~~~~~ 110 (205)
T PRK05419 39 PVKDIEHFTGLWALVFLLATLAV----TPLRRLTGQ--PLLIRTRRLLGLWAFFYATLHLLSYLLLDLGL-DW-SLLGKE 110 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cH-HHHHHH
Confidence 34456788899988887766655 456777775 58999999999999999999998776432211 01 112211
Q ss_pred hhcccchhHHHHHHHHHHHHHHHcchHHhhh-hhHHHHHHHHHHHHHHHHHHhhc
Q 008159 91 QKTGRIYLAGEIALVTGLVMWITSLPQIRRK-KFEFFYYTHHLYIIFLIFFLFHA 144 (575)
Q Consensus 91 ~~~~~~~~~G~i~~~~~~~~~~~S~~~iRr~-~ye~F~~~H~l~~~~~~~~~~H~ 144 (575)
..+..+...|.++++.++.+.+||..+.||+ .| .|..+|.+..+++++..+|.
T Consensus 111 i~~~~~i~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~Y~a~~L~~~H~ 164 (205)
T PRK05419 111 IVKRPYITVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLVYLIAILAPLHY 164 (205)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 1223446779999999999999999977765 67 89999999888888889994
No 89
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=98.73 E-value=7.2e-08 Score=99.16 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=108.3
Q ss_pred ccccCccccCCCCCCCcEEEEEE-----------eCCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCC
Q 008159 216 QWHSFSITSSSSVDDQTMSLIVK-----------CDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYD 284 (575)
Q Consensus 216 ~~hpfSI~s~p~~~~~~l~l~Ik-----------~~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~ 284 (575)
..|.|||+|.|. ...++++|- +.|--|++|.++. +|+.+.+.=--|....+.....
T Consensus 367 rPR~fSIas~~~--~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~-----------~g~~i~~~v~~g~l~~p~~~~~ 433 (574)
T KOG1159|consen 367 RPRAFSIASSPG--AHHLELLVAIVEYKTILKEPRRGLCSNWLASLK-----------PGDEIPIKVRPGTLYFPSDLNK 433 (574)
T ss_pred ccceeeeccCCC--CCceeEEEEEEEEeeeccccccchhHHHHhhcC-----------CCCeEEEEEecCccccCCCCCC
Confidence 569999999985 344776653 2588888887754 3666555544466544444467
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcc-hhhhHHhHHHHhhhccCCCceeEEEEEEeCCCC
Q 008159 285 SLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ-EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ 363 (575)
Q Consensus 285 ~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~-~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~ 363 (575)
+++|||-|+||||+.|++++-..++ .....|+++||+.+ |..|.+++.+.. ....+...+|+++
T Consensus 434 PlImVGPGTGvAPfRa~i~er~~q~-------~~~~~lFfGCR~K~~Df~y~~eW~~~~--------~~~~~~AFSRDqe 498 (574)
T KOG1159|consen 434 PLIMVGPGTGVAPFRALIQERIYQG-------DKENVLFFGCRNKDKDFLYEDEWTELN--------KRAFHTAFSRDQE 498 (574)
T ss_pred CeEEEcCCCCcccHHHHHHHHHhhc-------cCCceEEEecccCCccccccchhhhhh--------cchhhhhcccccc
Confidence 9999999999999999999877542 24447889999875 666666665531 2233446788877
Q ss_pred CcchhhhhhchhhhhhhhccC-CCceeEEecCCchHHHHHHHHHHHH
Q 008159 364 SSVTVREVLNDLSLVRAVRFG-TQSNYAVNGLESLIWMAALVGITSI 409 (575)
Q Consensus 364 ~~~~~~g~~~~~~~~~~~~~~-~~~~~~vcGp~~~~~~~~v~~~~~~ 409 (575)
.....+..+.+......--.. .+..+|+||..+ .|=.+|.+++.+
T Consensus 499 ~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~-~MP~~V~~al~e 544 (574)
T KOG1159|consen 499 QKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSG-KMPKDVKEALIE 544 (574)
T ss_pred cceeHHHHHHHhhHHHHHHHhccCCEEEEecCCC-CCcHHHHHHHHH
Confidence 666666666554432221222 346789999773 255666666444
No 90
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=98.62 E-value=1e-09 Score=89.32 Aligned_cols=53 Identities=6% Similarity=-0.153 Sum_probs=46.1
Q ss_pred ccCCcccccccccC-chhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCC
Q 008159 434 LAAPSEKVVSKEKT-PSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPV 486 (575)
Q Consensus 434 ~~~~~~~~~~~~~~-~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~ 486 (575)
+++..+++++.+++ ++|+||+++++|+.+|++|+.|.||+|++++++|++++.
T Consensus 4 v~~~~~~~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~ 57 (84)
T PRK10713 4 VTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWI 57 (84)
T ss_pred EEEEeCCcEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecC
Confidence 44556667777775 489999999999999999999999999999999999874
No 91
>CHL00134 petF ferredoxin; Validated
Probab=98.52 E-value=4.1e-09 Score=88.55 Aligned_cols=57 Identities=4% Similarity=-0.145 Sum_probs=48.3
Q ss_pred CcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCcCCCcc
Q 008159 437 PSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKA 493 (575)
Q Consensus 437 ~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~~~~~~~~ 493 (575)
.+.+.+++++.++||||+++++|+.++++|+.|.||+|++++++|+++......++.
T Consensus 13 ~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~ 69 (99)
T CHL00134 13 EGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDD 69 (99)
T ss_pred CCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCH
Confidence 444556888999999999999999999999999999999999999998755443433
No 92
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=98.45 E-value=8.7e-09 Score=86.34 Aligned_cols=52 Identities=2% Similarity=-0.132 Sum_probs=46.1
Q ss_pred CcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCc
Q 008159 437 PSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSL 488 (575)
Q Consensus 437 ~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~~~ 488 (575)
.++++++.++++++|||+++++|+.++++|+.|.||+|++++.+|+++....
T Consensus 11 ~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~ 62 (97)
T TIGR02008 11 DGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQ 62 (97)
T ss_pred CCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCcc
Confidence 4455778889999999999999999999999999999999999999876443
No 93
>PLN03136 Ferredoxin; Provisional
Probab=98.43 E-value=1.3e-08 Score=91.02 Aligned_cols=58 Identities=5% Similarity=-0.107 Sum_probs=49.4
Q ss_pred CcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCcCCCccc
Q 008159 437 PSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAV 494 (575)
Q Consensus 437 ~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~~~~~~~~~ 494 (575)
++.+++++.+++++|||+++++|+.+|++|+.|.||+|++++++|+|++..+..+++.
T Consensus 62 ~~~~~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~ 119 (148)
T PLN03136 62 PEGEQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDE 119 (148)
T ss_pred CCCcEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHH
Confidence 3444678889999999999999999999999999999999999999998655444443
No 94
>PTZ00038 ferredoxin; Provisional
Probab=98.37 E-value=2.2e-08 Score=92.82 Aligned_cols=63 Identities=8% Similarity=-0.043 Sum_probs=52.9
Q ss_pred ccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCcCCCccc
Q 008159 432 EKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAV 494 (575)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~~~~~~~~~ 494 (575)
+++..+..++++++++++||||+++++|+.+|++|+.|.||+|++++.+|+++......+++.
T Consensus 98 Vt~~~~~g~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~e 160 (191)
T PTZ00038 98 ITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDE 160 (191)
T ss_pred EEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHH
Confidence 455445556788889999999999999999999999999999999999999988665555443
No 95
>COG2717 Predicted membrane protein [Function unknown]
Probab=98.18 E-value=9.9e-05 Score=69.33 Aligned_cols=118 Identities=17% Similarity=0.051 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhHHHHHHhhcccchhHHHHHHHHHHHHHHHcchHHhhhhhHHHHH
Q 008159 49 EASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYY 128 (575)
Q Consensus 49 ~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~S~~~iRr~~ye~F~~ 128 (575)
...+++-|-+|.++++.++.|...|+......+ . +..+....+.+....|.++++.++.+.+||..+.||+.=..|..
T Consensus 71 ~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~-~-~~~~~d~~~rpyitiG~iaflll~pLalTS~k~~~rrlG~rW~~ 148 (209)
T COG2717 71 PKLIRIRRALGLWAFFYALLHFTAYLVLDLGLD-L-ALLGLDLLKRPYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKK 148 (209)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567889999999999999999998865422111 1 11222112334457799999999999999999988887799999
Q ss_pred HHHHHHHHHHHHHhhcCcc-----chhHHHH-HHHHHHHHHHHhhh
Q 008159 129 THHLYIIFLIFFLFHAGDR-----HFYMVFG-GIFLFGLDKLLRFI 168 (575)
Q Consensus 129 ~H~l~~~~~~~~~~H~~~~-----~~~~~~~-~~~l~~~dr~~R~~ 168 (575)
+|.+..+++++..+|.... ..+++.. ..+.+.+.|+.+..
T Consensus 149 LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~ 194 (209)
T COG2717 149 LHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996321 1111111 23456677777664
No 96
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=97.95 E-value=6.1e-07 Score=73.02 Aligned_cols=56 Identities=7% Similarity=-0.052 Sum_probs=48.6
Q ss_pred cccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCc
Q 008159 433 KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSL 488 (575)
Q Consensus 433 ~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~~~ 488 (575)
++..++.+++++++++++||++++.+|+.++++|+.|.||+|++++.+|.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~ 57 (84)
T cd00207 2 TINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDP 57 (84)
T ss_pred EEecCCCCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcc
Confidence 34445667788889999999999999999999999999999999999998877654
No 97
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=97.88 E-value=2.3e-07 Score=74.47 Aligned_cols=49 Identities=12% Similarity=-0.038 Sum_probs=44.3
Q ss_pred cCCcccccccccCchh-HHHHHHHH-HHHHHhhhhhHHHHHHHHhhhhcCC
Q 008159 435 AAPSEKVVSKEKTPSW-VADLIILS-SFIIAITGSTLMAILLRWRRLKKQT 483 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~s-ll~~l~~~-g~~~~~~C~~G~C~~C~~~~~~g~v 483 (575)
++++++.+++++++++ ||++++++ ++.++++|+.|.||+|++++.+|++
T Consensus 2 ~i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~ 52 (78)
T PF00111_consen 2 TINGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV 52 (78)
T ss_dssp ETTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE
T ss_pred EECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc
Confidence 4566677888888888 99999999 9999999999999999999999988
No 98
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=97.85 E-value=9.1e-07 Score=92.02 Aligned_cols=54 Identities=6% Similarity=-0.072 Sum_probs=48.5
Q ss_pred cccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCC
Q 008159 433 KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPV 486 (575)
Q Consensus 433 ~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~ 486 (575)
++++...++++.++.++|+||+++++|+.++++|+.|.||+|++++++|++++.
T Consensus 4 ~v~~~~~~~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~ 57 (339)
T PRK07609 4 QVTLQPSGRQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQG 57 (339)
T ss_pred EEEEecCCeEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecc
Confidence 345556677888899999999999999999999999999999999999999876
No 99
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=97.82 E-value=1.5e-06 Score=73.44 Aligned_cols=44 Identities=9% Similarity=-0.048 Sum_probs=38.4
Q ss_pred ccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhc--CCCCC
Q 008159 443 SKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKK--QTPPV 486 (575)
Q Consensus 443 ~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g--~v~~~ 486 (575)
...+.++++|++++++|++++++||+|.|++|++++.+| +++..
T Consensus 17 ~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~ 62 (102)
T COG0633 17 EAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPP 62 (102)
T ss_pred EeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCc
Confidence 344558999999999999999999999999999999999 55443
No 100
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.0029 Score=62.06 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=99.0
Q ss_pred CceeEEEEEEecCCeEEEEEecCCCCcc---c-CCeEEEEEeCCCCC--------------------CccccCccccCCC
Q 008159 172 PETCILSARVFPSKAIELILPKHAGLKF---T-PTSVIFMKIPSISK--------------------FQWHSFSITSSSS 227 (575)
Q Consensus 172 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~---~-pGQ~v~l~~p~~~~--------------------~~~hpfSI~s~p~ 227 (575)
..+.++.++.++++.+++++.-+....+ . .+||+.|.+|..+. ...|+|||.+...
T Consensus 18 ~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d~ 97 (265)
T COG2375 18 HEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVDA 97 (265)
T ss_pred eEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeecc
Confidence 3567888999999999999987754333 3 44599999975321 2379999976633
Q ss_pred CCCCcEEEEE--E-eCCCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHH
Q 008159 228 VDDQTMSLIV--K-CDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQE 304 (575)
Q Consensus 228 ~~~~~l~l~I--k-~~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~ 304 (575)
+.+++.|-+ - ..|..+++-.+ .+ +|+++.+.||-|.... ...++.++||+-=+++--+..||++
T Consensus 98 -~~~e~~vDfVlH~~~gpas~WA~~-a~----------~GD~l~i~GP~g~~~p-~~~~~~~lLigDetAlPAIa~iLE~ 164 (265)
T COG2375 98 -AAGELDVDFVLHGEGGPASRWART-AQ----------PGDTLTIMGPRGSLVP-PEAADWYLLIGDETALPAIARILET 164 (265)
T ss_pred -cccEEEEEEEEcCCCCcchhhHhh-CC----------CCCEEEEeCCCCCCCC-CCCcceEEEeccccchHHHHHHHHh
Confidence 344444333 3 35666666543 33 6999999999999654 3578899999999999999999998
Q ss_pred HHHhhccCCCCCCceEEEEEEeCCcchh
Q 008159 305 IASAQSNRKYRFPSKVQLIYVIKSSQEI 332 (575)
Q Consensus 305 l~~~~~~~~~~~~~~v~li~~~r~~~~l 332 (575)
+-.. .+.+.+-.+++.++.
T Consensus 165 lp~~---------~~~~a~lev~d~ad~ 183 (265)
T COG2375 165 LPAD---------TPAEAFLEVDDAADR 183 (265)
T ss_pred CCCC---------CceEEEEEeCChHHh
Confidence 8653 344666667776554
No 101
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=97.69 E-value=2.4e-06 Score=88.82 Aligned_cols=50 Identities=4% Similarity=-0.114 Sum_probs=43.8
Q ss_pred CcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCC
Q 008159 437 PSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPV 486 (575)
Q Consensus 437 ~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~ 486 (575)
.+.+..++++.++||||+++++|+.+|++|+.|.||+|++++++|++++.
T Consensus 11 ~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~ 60 (340)
T PRK11872 11 DGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQD 60 (340)
T ss_pred CCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccC
Confidence 34444567789999999999999999999999999999999999998753
No 102
>PRK05713 hypothetical protein; Provisional
Probab=97.68 E-value=2.6e-06 Score=87.54 Aligned_cols=53 Identities=8% Similarity=-0.128 Sum_probs=45.9
Q ss_pred ccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCCCCCCcCCC
Q 008159 439 EKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQG 491 (575)
Q Consensus 439 ~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v~~~~~~~~ 491 (575)
++++++++.++||||+++++|+.++++|+.|.||+|++++++|+++...+..+
T Consensus 7 ~~~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l 59 (312)
T PRK05713 7 GERRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEAL 59 (312)
T ss_pred CCeEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccC
Confidence 44677788999999999999999999999999999999999999875544443
No 103
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=97.46 E-value=7.2e-06 Score=70.32 Aligned_cols=48 Identities=10% Similarity=-0.021 Sum_probs=41.7
Q ss_pred cccccccccCchhHHHHHHHHHHHHHhhhh-hHHHHHHHHhhhhcCCCC
Q 008159 438 SEKVVSKEKTPSWVADLIILSSFIIAITGS-TLMAILLRWRRLKKQTPP 485 (575)
Q Consensus 438 ~~~~~~~~~~~~sll~~l~~~g~~~~~~C~-~G~C~~C~~~~~~g~v~~ 485 (575)
..++++++..+++|||+++++|++++++|+ .|.|++|++++.+|+...
T Consensus 13 p~~~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~ 61 (110)
T TIGR02007 13 PEGAVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSL 61 (110)
T ss_pred CCCeEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccC
Confidence 345677788999999999999999999999 599999999999986443
No 104
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=97.28 E-value=2.1e-05 Score=83.94 Aligned_cols=58 Identities=2% Similarity=-0.115 Sum_probs=49.5
Q ss_pred ccccccCCcc-cccccccCchhHHHHHHHHHHHHHhhhhh-HHHHHHHHhhhhcCCCCCC
Q 008159 430 PSEKLAAPSE-KVVSKEKTPSWVADLIILSSFIIAITGST-LMAILLRWRRLKKQTPPVS 487 (575)
Q Consensus 430 ~~~~~~~~~~-~~~~~~~~~~sll~~l~~~g~~~~~~C~~-G~C~~C~~~~~~g~v~~~~ 487 (575)
..+++++.+. ++++++++++||||+++++|+.++++|++ |.||+|++++.+|++.+..
T Consensus 34 ~~~~i~~~~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~ 93 (409)
T PRK05464 34 GDVTIKINGDPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILP 93 (409)
T ss_pred ccEEEEEcCCCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCCh
Confidence 3466666653 57788899999999999999999999995 9999999999999876544
No 105
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=96.98 E-value=5.7e-05 Score=80.50 Aligned_cols=57 Identities=7% Similarity=-0.048 Sum_probs=47.7
Q ss_pred cccccCC-cccccccccCchhHHHHHHHHHHHHHhhhhh-HHHHHHHHhhhhcCCCCCC
Q 008159 431 SEKLAAP-SEKVVSKEKTPSWVADLIILSSFIIAITGST-LMAILLRWRRLKKQTPPVS 487 (575)
Q Consensus 431 ~~~~~~~-~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~-G~C~~C~~~~~~g~v~~~~ 487 (575)
.+++..+ +.++++.++.++|+|++++++|+.+++.|++ |.||+|++++.+|++++..
T Consensus 31 ~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~ 89 (405)
T TIGR01941 31 DITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILP 89 (405)
T ss_pred cEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCCh
Confidence 3555554 3457788899999999999999999999995 8999999999999876543
No 106
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=96.86 E-value=0.0028 Score=54.92 Aligned_cols=90 Identities=10% Similarity=0.116 Sum_probs=54.6
Q ss_pred eEEEEEEecCCeEEEEEecCCCCc---ccCCeEEEEEeCCCCCC---------------------ccccCccccCCCCCC
Q 008159 175 CILSARVFPSKAIELILPKHAGLK---FTPTSVIFMKIPSISKF---------------------QWHSFSITSSSSVDD 230 (575)
Q Consensus 175 ~v~~~~~~~~~~~~l~~~~~~~~~---~~pGQ~v~l~~p~~~~~---------------------~~hpfSI~s~p~~~~ 230 (575)
+|++++.++++.+++++.-+.... ..+|||+.|.+|..+.. ..|.||+.+... +.
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~-~~ 79 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDP-ET 79 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEET-T-
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcC-CC
Confidence 367889999999999998764322 46999999999865422 468999988754 45
Q ss_pred CcEEEEEEeC---CCccHHHHHHHHhcccCCcccCcceeEEEeCCCCCC
Q 008159 231 QTMSLIVKCD---GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPA 276 (575)
Q Consensus 231 ~~l~l~Ik~~---G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~ 276 (575)
+++.|-+-.. |..+++..+ ++ +|+.+.|.||-|.|
T Consensus 80 ~~l~iDfv~Hg~~Gpas~WA~~-A~----------pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 80 GELDIDFVLHGDEGPASRWARS-AR----------PGDRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEEE--SS--HHHHHHHH-------------TT-EEEEEEEE---
T ss_pred CEEEEEEEECCCCCchHHHHhh-CC----------CCCEEEEeCCCCCC
Confidence 6777766554 446676644 33 69999999998875
No 107
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=96.74 E-value=8.9e-05 Score=64.18 Aligned_cols=46 Identities=7% Similarity=-0.093 Sum_probs=38.9
Q ss_pred CCcccccccccCchhHHHHHHHHHHHHHhhhhh-HHHHHHHHhhhhc
Q 008159 436 APSEKVVSKEKTPSWVADLIILSSFIIAITGST-LMAILLRWRRLKK 481 (575)
Q Consensus 436 ~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~-G~C~~C~~~~~~g 481 (575)
..+..++++...++|||++++++|++++..|++ |.|++|+++++++
T Consensus 8 ~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~ 54 (117)
T PLN02593 8 KDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDE 54 (117)
T ss_pred CCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecC
Confidence 344456677788999999999999999999996 9999999999643
No 108
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=95.70 E-value=0.0016 Score=63.27 Aligned_cols=57 Identities=7% Similarity=-0.092 Sum_probs=46.4
Q ss_pred cccccCCc-ccccccccCchhHHHHHHHHHHHHHhhhh-hHHHHHHHHhhhhcCCCCCC
Q 008159 431 SEKLAAPS-EKVVSKEKTPSWVADLIILSSFIIAITGS-TLMAILLRWRRLKKQTPPVS 487 (575)
Q Consensus 431 ~~~~~~~~-~~~~~~~~~~~sll~~l~~~g~~~~~~C~-~G~C~~C~~~~~~g~v~~~~ 487 (575)
++++.+++ .+++..++.+.+||.+|...|+.+++.|| .|.|+.|++++++|.-++..
T Consensus 36 d~ti~IN~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~Lp 94 (410)
T COG2871 36 DITIKINGDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILP 94 (410)
T ss_pred ceEEEeCCChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCc
Confidence 45555544 33667789999999999999999999999 78999999999988765554
No 109
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=94.47 E-value=0.026 Score=54.14 Aligned_cols=32 Identities=31% Similarity=0.644 Sum_probs=28.7
Q ss_pred EEecCccchHHHHHHHhhhhhhhhhccCCCCCCceeeecccc
Q 008159 532 VLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 573 (575)
Q Consensus 532 V~~cGp~~l~~~v~~~c~~~~~~~~~~~~~~~~~f~fhs~~f 573 (575)
|++|||++|.+++++.|.+ +....++||+|+|
T Consensus 179 v~~CGp~~~~~~~~~~~~~----------~~~~~~~~~~e~f 210 (210)
T cd06186 179 VVVCGPPGLVDDVRNAVAK----------KGGTGVEFHEESF 210 (210)
T ss_pred EEEECchhhccHHHHHHhh----------cCCCceEEEeecC
Confidence 9999999999999999987 3357799999998
No 110
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=93.74 E-value=0.004 Score=55.53 Aligned_cols=49 Identities=2% Similarity=-0.192 Sum_probs=40.5
Q ss_pred cccccccccCchhHHHHHHHH-HHHHHhhhh-hHHHHHHHHhhhhcCCCCC
Q 008159 438 SEKVVSKEKTPSWVADLIILS-SFIIAITGS-TLMAILLRWRRLKKQTPPV 486 (575)
Q Consensus 438 ~~~~~~~~~~~~sll~~l~~~-g~~~~~~C~-~G~C~~C~~~~~~g~v~~~ 486 (575)
+..++++++.++||++++..+ ++.++..|+ .|.|++|++.+.+|..+..
T Consensus 45 G~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l 95 (143)
T PTZ00490 45 GTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKL 95 (143)
T ss_pred CCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccC
Confidence 344678889999999999995 688899999 8999999999988755443
No 111
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=93.01 E-value=0.009 Score=56.85 Aligned_cols=53 Identities=6% Similarity=-0.128 Sum_probs=43.1
Q ss_pred ccccccCCcccccccccCchhHHHHHHHHHHH--HHhhhhhHHHHHHHHhhhhcCC
Q 008159 430 PSEKLAAPSEKVVSKEKTPSWVADLIILSSFI--IAITGSTLMAILLRWRRLKKQT 483 (575)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~--~~~~C~~G~C~~C~~~~~~g~v 483 (575)
..+++.+++..++++++++.+||++|.+..-. +..+|+.|.||+|.+ +++|+.
T Consensus 50 ~~i~~~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~~ 104 (217)
T PRK11433 50 SPVTLKVNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGRR 104 (217)
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCEE
Confidence 35778889988888889999999999985333 579999999999998 556643
No 112
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=92.75 E-value=0.0098 Score=58.35 Aligned_cols=45 Identities=7% Similarity=-0.070 Sum_probs=38.8
Q ss_pred ccccCCcccccccccCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhh
Q 008159 432 EKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGS------TLMAILLRWRR 478 (575)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~ 478 (575)
+++++++. .+++++++|+|++++++|+.+|..|. .|.|+.|++++
T Consensus 4 v~i~idg~--~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v 54 (234)
T PRK07569 4 KTLTIDDQ--LVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI 54 (234)
T ss_pred EEEEECCE--EEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE
Confidence 45556554 47788999999999999999999998 99999999987
No 113
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=92.08 E-value=0.0058 Score=49.34 Aligned_cols=47 Identities=4% Similarity=-0.148 Sum_probs=32.2
Q ss_pred cccccCCcccccccccCchhHHHHHHHHHHHHHhhhhh----------HHHHHHHHhhh
Q 008159 431 SEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGST----------LMAILLRWRRL 479 (575)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~----------G~C~~C~~~~~ 479 (575)
.+++.+++. .+++.+++|+++++.++|+.+|..|.. |.|..|.+.+.
T Consensus 3 ~v~i~idG~--~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~ 59 (82)
T PF13510_consen 3 MVTITIDGK--PVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD 59 (82)
T ss_dssp EEEEEETTE--EEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES
T ss_pred EEEEEECCE--EEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC
Confidence 355666664 556688999999999999999988886 89999987664
No 114
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=91.56 E-value=0.0095 Score=50.69 Aligned_cols=37 Identities=8% Similarity=-0.190 Sum_probs=26.8
Q ss_pred cccccCchhHHHHHHHHHHH------HHhhhhhHHHHHHHHhh
Q 008159 442 VSKEKTPSWVADLIILSSFI------IAITGSTLMAILLRWRR 478 (575)
Q Consensus 442 ~~~~~~~~sll~~l~~~g~~------~~~~C~~G~C~~C~~~~ 478 (575)
++.+.++.|+||+|....-. -.++|+.|+||+|.+++
T Consensus 22 ~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I 64 (110)
T PF13085_consen 22 EVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI 64 (110)
T ss_dssp EEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE
T ss_pred EecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE
Confidence 34456778999999975333 36899999999998765
No 115
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=91.44 E-value=0.025 Score=51.24 Aligned_cols=49 Identities=2% Similarity=-0.201 Sum_probs=42.0
Q ss_pred ccccccCCcccccccccCchhHHHHHHHHHH-HHHhhhhhHHHHHHHHhh
Q 008159 430 PSEKLAAPSEKVVSKEKTPSWVADLIILSSF-IIAITGSTLMAILLRWRR 478 (575)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~-~~~~~C~~G~C~~C~~~~ 478 (575)
..+++.+++..++++++++.+|++.|.+.++ .+..+|+.|.||+|.+-+
T Consensus 7 ~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv 56 (159)
T PRK09908 7 ITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV 56 (159)
T ss_pred eeEEEEECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE
Confidence 3577888999888888999999999998776 468999999999997655
No 116
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=91.19 E-value=0.15 Score=49.38 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.7
Q ss_pred EEEecCccchHHHHHHHhhhhhhhhhccCCCCCCceeeeccccc
Q 008159 531 GVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFT 574 (575)
Q Consensus 531 GV~~cGp~~l~~~v~~~c~~~~~~~~~~~~~~~~~f~fhs~~f~ 574 (575)
=||+|||+.|.+.|++.+++ . .+|+|.|+
T Consensus 192 ~v~~CGP~~m~~~~~~~~~~----------~-----~~~~e~f~ 220 (220)
T cd06197 192 EVYLCGPPALEKAVLEWLEG----------K-----KVHRESFA 220 (220)
T ss_pred cEEEECcHHHHHHHHHHhhh----------c-----eeEecccC
Confidence 48999999999999999886 1 67888885
No 117
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=89.99 E-value=0.033 Score=65.20 Aligned_cols=49 Identities=2% Similarity=-0.122 Sum_probs=41.0
Q ss_pred cccCCcccccccccCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhhhhcCC
Q 008159 433 KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGS------TLMAILLRWRRLKKQT 483 (575)
Q Consensus 433 ~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~~~g~v 483 (575)
++++++. .+++++++|+|++++++|+.+|+.|. .|.|..|.+++.+|.+
T Consensus 3 ~i~idg~--~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~ 57 (847)
T PRK08166 3 TIHVDGK--EYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE 57 (847)
T ss_pred EEEECCE--EEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc
Confidence 3444444 46678999999999999999999998 7999999999988754
No 118
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=89.79 E-value=0.39 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.7
Q ss_pred eEEEecCccchHHHHHHHhhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
.-||+|||+.|.+.+.+.+.+.
T Consensus 198 ~~v~~CGp~~~~~~v~~~l~~~ 219 (232)
T cd06212 198 CDVYLCGPPPMIDAALPVLEMS 219 (232)
T ss_pred CEEEEECCHHHHHHHHHHHHHc
Confidence 4599999999999999999873
No 119
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=89.51 E-value=0.28 Score=48.10 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.1
Q ss_pred ceeEEEecCccchHHHHHHHhhhhh
Q 008159 528 SDIGVLVCGPESMKESVAKTSQRKS 552 (575)
Q Consensus 528 ~~vGV~~cGp~~l~~~v~~~c~~~~ 552 (575)
++--||+|||+.|.+++++.+++..
T Consensus 200 ~~~~vyiCGp~~m~~~~~~~l~~~G 224 (241)
T cd06195 200 ETSHVMLCGNPQMIDDTQELLKEKG 224 (241)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHHcC
Confidence 3456999999999999999998743
No 120
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.54 E-value=0.45 Score=53.75 Aligned_cols=56 Identities=25% Similarity=0.426 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhhhhhHH-H---Hh--CCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 008159 22 LAEACLALLLLPILRGLSLF-R---LL--GIQFEASVRYHIWLGTAMIFFATIHGGSTLFVW 77 (575)
Q Consensus 22 ~a~~~~~ll~l~~~R~~~~~-~---~~--g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~ 77 (575)
....|++++++++||+.... + .+ -+|+++++.||+.+|.....+..+|...+.++.
T Consensus 181 ~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~ 242 (646)
T KOG0039|consen 181 TLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNF 242 (646)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999998643 2 22 389999999999999999999999999987764
No 121
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=88.29 E-value=0.41 Score=45.84 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=29.6
Q ss_pred CCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhh
Q 008159 510 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 510 ~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+|++.++++... .....|++|||+.|.+++++...+.
T Consensus 162 ~~~~~~~~~~~~-----~~~~~vyicGp~~m~~~~~~~l~~~ 198 (211)
T cd06185 162 GRLDLAALLAAP-----PAGTHVYVCGPEGMMDAVRAAAAAL 198 (211)
T ss_pred CccCHHHHhccC-----CCCCEEEEECCHHHHHHHHHHHHHc
Confidence 578888887653 1245799999999999999999874
No 122
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=86.94 E-value=0.087 Score=47.23 Aligned_cols=46 Identities=4% Similarity=-0.211 Sum_probs=37.4
Q ss_pred cccCCcccccccccCchhHHHHHHHH-HH-HHHhhhhhHHHHHHHHhh
Q 008159 433 KLAAPSEKVVSKEKTPSWVADLIILS-SF-IIAITGSTLMAILLRWRR 478 (575)
Q Consensus 433 ~~~~~~~~~~~~~~~~~sll~~l~~~-g~-~~~~~C~~G~C~~C~~~~ 478 (575)
++++++..++++++++.+|+|.|.+. ++ .+..+|+.|.||+|.+-+
T Consensus 3 ~~~vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv 50 (148)
T TIGR03193 3 RLTVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV 50 (148)
T ss_pred EEEECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE
Confidence 46677777888888999999999973 43 357999999999997655
No 123
>PRK08051 fre FMN reductase; Validated
Probab=86.78 E-value=0.43 Score=46.59 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=18.5
Q ss_pred EEEecCccchHHHHHHHh-hh
Q 008159 531 GVLVCGPESMKESVAKTS-QR 550 (575)
Q Consensus 531 GV~~cGp~~l~~~v~~~c-~~ 550 (575)
-||+|||+.|.+.|.+++ .+
T Consensus 196 ~vyicGp~~m~~~v~~~l~~~ 216 (232)
T PRK08051 196 DIYIAGRFEMAKIARELFCRE 216 (232)
T ss_pred EEEEECCHHHHHHHHHHHHHH
Confidence 499999999999999999 76
No 124
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=86.71 E-value=0.072 Score=52.53 Aligned_cols=37 Identities=8% Similarity=-0.186 Sum_probs=30.0
Q ss_pred cccccCchhHHHHHHHHHH------HHHhhhhhHHHHHHHHhh
Q 008159 442 VSKEKTPSWVADLIILSSF------IIAITGSTLMAILLRWRR 478 (575)
Q Consensus 442 ~~~~~~~~sll~~l~~~g~------~~~~~C~~G~C~~C~~~~ 478 (575)
++++.++.|+|++|...+. ...++|+.|+||+|.+.+
T Consensus 23 ~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I 65 (251)
T PRK12386 23 TVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI 65 (251)
T ss_pred EEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE
Confidence 4455678899999999775 457999999999997655
No 125
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=86.57 E-value=0.3 Score=49.85 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=19.2
Q ss_pred EEEecCccchHHHHHHHhhhhh
Q 008159 531 GVLVCGPESMKESVAKTSQRKS 552 (575)
Q Consensus 531 GV~~cGp~~l~~~v~~~c~~~~ 552 (575)
-||+|||++|.+++++.-+..+
T Consensus 403 sv~fCGP~~m~dsL~r~l~~~~ 424 (438)
T COG4097 403 SVFFCGPIKMMDSLRRDLKKQN 424 (438)
T ss_pred eEEEEcCHHHHHHHHHHHHHcC
Confidence 6999999999999999877633
No 126
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=85.85 E-value=0.18 Score=48.92 Aligned_cols=36 Identities=6% Similarity=-0.151 Sum_probs=28.3
Q ss_pred ccccCchhHHHHHHHHH------HHHHhhhhhHHHHHHHHhh
Q 008159 443 SKEKTPSWVADLIILSS------FIIAITGSTLMAILLRWRR 478 (575)
Q Consensus 443 ~~~~~~~sll~~l~~~g------~~~~~~C~~G~C~~C~~~~ 478 (575)
+...++.++||+|...- +....+||.|+||+|...+
T Consensus 24 v~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I 65 (234)
T COG0479 24 VPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI 65 (234)
T ss_pred ecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE
Confidence 34457789999998754 4457999999999998765
No 127
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=85.84 E-value=0.1 Score=51.26 Aligned_cols=37 Identities=3% Similarity=-0.268 Sum_probs=28.5
Q ss_pred cccccCchhHHHHHHHHH------HHHHhhhhhHHHHHHHHhh
Q 008159 442 VSKEKTPSWVADLIILSS------FIIAITGSTLMAILLRWRR 478 (575)
Q Consensus 442 ~~~~~~~~sll~~l~~~g------~~~~~~C~~G~C~~C~~~~ 478 (575)
++.+.++.|+||+|.... +.-.++|+.|+||+|..++
T Consensus 27 ~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I 69 (239)
T PRK13552 27 QLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI 69 (239)
T ss_pred EecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE
Confidence 345567789999999764 3335899999999997765
No 128
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=85.76 E-value=0.1 Score=51.53 Aligned_cols=37 Identities=3% Similarity=-0.189 Sum_probs=28.3
Q ss_pred cccccCchhHHHHHHHHH-------------HHHHhhhhhHHHHHHHHhh
Q 008159 442 VSKEKTPSWVADLIILSS-------------FIIAITGSTLMAILLRWRR 478 (575)
Q Consensus 442 ~~~~~~~~sll~~l~~~g-------------~~~~~~C~~G~C~~C~~~~ 478 (575)
++++.++.|+||+|.... +.-.++|+.|+||+|..++
T Consensus 26 ~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I 75 (249)
T PRK08640 26 EIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI 75 (249)
T ss_pred EecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE
Confidence 344567789999999763 3336899999999997765
No 129
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=85.58 E-value=0.15 Score=50.24 Aligned_cols=38 Identities=3% Similarity=-0.290 Sum_probs=29.2
Q ss_pred cccccCchhHHHHHHHHHHH------HHhhhhhHHHHHHHHhhh
Q 008159 442 VSKEKTPSWVADLIILSSFI------IAITGSTLMAILLRWRRL 479 (575)
Q Consensus 442 ~~~~~~~~sll~~l~~~g~~------~~~~C~~G~C~~C~~~~~ 479 (575)
.++++++.|+|++|....-. -..+|+.|+||+|.+++-
T Consensus 28 ~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~In 71 (244)
T PRK12385 28 EVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVN 71 (244)
T ss_pred EeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceEC
Confidence 34556788999999876432 246999999999988765
No 130
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=85.51 E-value=0.1 Score=50.71 Aligned_cols=41 Identities=5% Similarity=-0.154 Sum_probs=31.3
Q ss_pred ccccccCchhHHHHHHHHH------HHHHhhhhhHHHHHHHHhhhhcC
Q 008159 441 VVSKEKTPSWVADLIILSS------FIIAITGSTLMAILLRWRRLKKQ 482 (575)
Q Consensus 441 ~~~~~~~~~sll~~l~~~g------~~~~~~C~~G~C~~C~~~~~~g~ 482 (575)
.+++++++.|+|++|...+ +....+|+.|+||+|.+++ .|+
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~ 63 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGK 63 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCE
Confidence 3445668899999999876 3335899999999998864 453
No 131
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=85.43 E-value=0.8 Score=38.51 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=17.5
Q ss_pred CCceeEEEecCccchHHHHHH
Q 008159 526 AGSDIGVLVCGPESMKESVAK 546 (575)
Q Consensus 526 ~~~~vGV~~cGp~~l~~~v~~ 546 (575)
...+.-||+|||++|.++|++
T Consensus 89 ~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 89 DPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp CTTTEEEEEEEEHHHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHhcC
Confidence 345677999999999999875
No 132
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=85.23 E-value=0.13 Score=50.76 Aligned_cols=35 Identities=0% Similarity=-0.207 Sum_probs=27.5
Q ss_pred ccCchhHHHHHHHHH----------HHHHhhhhhHHHHHHHHhhh
Q 008159 445 EKTPSWVADLIILSS----------FIIAITGSTLMAILLRWRRL 479 (575)
Q Consensus 445 ~~~~~sll~~l~~~g----------~~~~~~C~~G~C~~C~~~~~ 479 (575)
+.++.|+||+|.... +.-.++|+.|+||+|..++-
T Consensus 27 ~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~IN 71 (250)
T PRK07570 27 ISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVIN 71 (250)
T ss_pred CCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEEC
Confidence 346789999998653 44469999999999988664
No 133
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=83.81 E-value=1.1 Score=44.13 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=27.5
Q ss_pred cCCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhh
Q 008159 509 GGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 509 g~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
.+|++...+-+ . ....+.-||+|||++|.+++++..++.
T Consensus 193 ~g~~~~~~l~~-~---~~~~~~~v~icGp~~m~~~v~~~l~~~ 231 (247)
T cd06184 193 AGRIDLALLRE-L---LLPADADFYLCGPVPFMQAVREGLKAL 231 (247)
T ss_pred cCccCHHHHhh-c---cCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 36776543332 1 123457799999999999999999873
No 134
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=83.72 E-value=0.71 Score=44.83 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhh
Q 008159 510 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 510 ~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+|.+- +++++..... ++.-||+|||++|.+++++..++.
T Consensus 181 g~~~~-~~l~~~~~~~--~~~~v~icGp~~m~~~~~~~l~~~ 219 (231)
T cd06215 181 GRLNA-ELLALLVPDL--KERTVFVCGPAGFMKAVKSLLAEL 219 (231)
T ss_pred CcCCH-HHHHHhcCCc--cCCeEEEECCHHHHHHHHHHHHHc
Confidence 56553 2344432222 234699999999999999999873
No 135
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=83.41 E-value=0.18 Score=45.56 Aligned_cols=48 Identities=4% Similarity=-0.097 Sum_probs=39.6
Q ss_pred cccccCCcccccccccCchhHHHHHHH-HHHH-HHhhhhhHHHHHHHHhh
Q 008159 431 SEKLAAPSEKVVSKEKTPSWVADLIIL-SSFI-IAITGSTLMAILLRWRR 478 (575)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~sll~~l~~-~g~~-~~~~C~~G~C~~C~~~~ 478 (575)
.+++++++..++..++++.++++.|.. .++. +..+|+.|.||+|.+-+
T Consensus 3 ~i~f~vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv 52 (151)
T TIGR03198 3 QFRFTVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI 52 (151)
T ss_pred cEEEEECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE
Confidence 467788888888888888999999987 3544 47899999999998766
No 136
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=82.91 E-value=1.4 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.9
Q ss_pred ceeEEEecCccchHHHHHHHhhhh
Q 008159 528 SDIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 528 ~~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
.+.-||+|||+.|.+.+++++.+.
T Consensus 248 ~~~~vyiCGP~~m~~~~~~~l~~~ 271 (283)
T cd06188 248 EDIEFYLCGPPPMNSAVIKMLDDL 271 (283)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc
Confidence 356799999999999999999873
No 137
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=82.53 E-value=0.88 Score=44.16 Aligned_cols=22 Identities=32% Similarity=0.663 Sum_probs=20.0
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+.-||+|||++|.+++++..++
T Consensus 193 ~~~v~icGp~~m~~~~~~~l~~ 214 (228)
T cd06209 193 DVDVYLCGPPPMVDAVRSWLDE 214 (228)
T ss_pred CcEEEEeCCHHHHHHHHHHHHH
Confidence 4569999999999999999987
No 138
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=82.27 E-value=0.87 Score=43.78 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.1
Q ss_pred ceeEEEecCccchHHHHHHHhhhh
Q 008159 528 SDIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 528 ~~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
++.-||+|||+.|.+++++.+.+.
T Consensus 180 ~~~~vyicGp~~m~~~v~~~l~~~ 203 (216)
T cd06198 180 ADADVWFCGPPGMADALEKGLRAL 203 (216)
T ss_pred CCCeEEEECcHHHHHHHHHHHHHc
Confidence 456799999999999999999873
No 139
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=81.99 E-value=0.88 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.2
Q ss_pred eeEEEecCccchHHHHHHHhhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+--||+|||+.|.+++.++.++.
T Consensus 190 ~~~v~vCGp~~m~~~~~~~l~~~ 212 (224)
T cd06189 190 DFDVYACGSPEMVYAARDDFVEK 212 (224)
T ss_pred ccEEEEECCHHHHHHHHHHHHHc
Confidence 45599999999999999999873
No 140
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=81.87 E-value=1.8 Score=42.10 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=19.0
Q ss_pred eEEEecCccchHHHHHHHhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~ 550 (575)
--||+|||+.|.+.+++..++
T Consensus 202 ~~vyicGp~~m~~~~~~~l~~ 222 (236)
T cd06210 202 PDIYLCGPPGMVDAAFAAARE 222 (236)
T ss_pred cEEEEeCCHHHHHHHHHHHHH
Confidence 348999999999999999987
No 141
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=81.85 E-value=37 Score=31.33 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=25.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008159 46 IQFEASVRYHIWLGTAMIFFATIHGGSTLF 75 (575)
Q Consensus 46 ~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~ 75 (575)
-..+....+|+++|.+.++..+++.+..+.
T Consensus 41 ~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 41 PGRQLLRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999999999999876543
No 142
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=81.44 E-value=0.23 Score=52.51 Aligned_cols=51 Identities=8% Similarity=-0.174 Sum_probs=43.1
Q ss_pred cccccccCchhHHHHHHHHHHHHHhhhh-hHHHHHHHHhhhhcCCCCCCcCCC
Q 008159 440 KVVSKEKTPSWVADLIILSSFIIAITGS-TLMAILLRWRRLKKQTPPVSLNQG 491 (575)
Q Consensus 440 ~~~~~~~~~~sll~~l~~~g~~~~~~C~-~G~C~~C~~~~~~g~v~~~~~~~~ 491 (575)
++..+ +.+.|+||++.+.|+-+.+.|+ -|.||-|.+-+.+|.....|....
T Consensus 10 gkr~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh 61 (614)
T COG3894 10 GKRGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDH 61 (614)
T ss_pred CCcCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhH
Confidence 34444 8889999999999999999998 799999999999998777665544
No 143
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=81.36 E-value=1 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred eeEEEecCccchHHHHHHHhhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+--|++|||+.|.+++.+++++.
T Consensus 201 ~~~v~icGp~~m~~~v~~~l~~~ 223 (235)
T cd06217 201 GRRVYVCGPPAFVEAATRLLLEL 223 (235)
T ss_pred CCEEEEECCHHHHHHHHHHHHHc
Confidence 34699999999999999999874
No 144
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=79.87 E-value=2.1 Score=41.49 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.1
Q ss_pred eeEEEecCccchHHHHHHHhhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+--||+|||+.|.++++++..+.
T Consensus 193 ~~~v~~CGp~~~~~~~~~~l~~~ 215 (227)
T cd06213 193 ATEAYLCGPPAMIDAAIAVLRAL 215 (227)
T ss_pred CCEEEEECCHHHHHHHHHHHHHc
Confidence 34699999999999999999873
No 145
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=78.87 E-value=1.3 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.6
Q ss_pred eEEEecCccchHHHHHHHhhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
--||+|||+.|.+.+++.+++.
T Consensus 198 ~~vyicGp~~mv~~~~~~l~~~ 219 (231)
T cd06191 198 REAFICGPAGMMDAVETALKEL 219 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHHc
Confidence 4699999999999999999873
No 146
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=78.81 E-value=3 Score=41.12 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhh
Q 008159 511 RPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 511 RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+....+.+.+..... .+--||+|||++|.+++++++++
T Consensus 164 ~g~v~~~l~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~ 201 (246)
T cd06218 164 KGFVTDLLKELLAEA--RPDVVYACGPEPMLKAVAELAAE 201 (246)
T ss_pred ceehHHHHHHHhhcc--CCCEEEEECCHHHHHHHHHHHHh
Confidence 445566665543322 35689999999999999999987
No 147
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=78.56 E-value=0.18 Score=55.15 Aligned_cols=39 Identities=8% Similarity=-0.149 Sum_probs=31.6
Q ss_pred ccccCchhHHHHHHH------HHHHHHhhhhhHHHHHHHHhhhhcC
Q 008159 443 SKEKTPSWVADLIIL------SSFIIAITGSTLMAILLRWRRLKKQ 482 (575)
Q Consensus 443 ~~~~~~~sll~~l~~------~g~~~~~~C~~G~C~~C~~~~~~g~ 482 (575)
+.+++++|+||++.+ .++..+.+|+.|+||+|.+++ +|+
T Consensus 25 v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~ 69 (486)
T PRK06259 25 VPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE 69 (486)
T ss_pred EeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe
Confidence 445688999999996 445568999999999999984 665
No 148
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=77.95 E-value=0.24 Score=48.43 Aligned_cols=38 Identities=8% Similarity=-0.145 Sum_probs=30.6
Q ss_pred cccccc-CchhHHHHHHHHH------HHHHhhhhhHHHHHHHHhh
Q 008159 441 VVSKEK-TPSWVADLIILSS------FIIAITGSTLMAILLRWRR 478 (575)
Q Consensus 441 ~~~~~~-~~~sll~~l~~~g------~~~~~~C~~G~C~~C~~~~ 478 (575)
.+++++ ++.|+|++|...+ +....+|+.|+||+|.+.+
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v 64 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI 64 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE
Confidence 445667 7899999999987 2225899999999998877
No 149
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=77.46 E-value=3 Score=40.13 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=26.1
Q ss_pred CCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhh
Q 008159 511 RPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 511 RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+-...+.+.+.... .++--|++|||+.|.+++.+..++.
T Consensus 174 ~g~~~~~~~~~~~~--~~~~~v~vcGp~~~~~~v~~~l~~~ 212 (224)
T cd06187 174 RGLVTDVVGRDGPD--WADHDIYICGPPAMVDATVDALLAR 212 (224)
T ss_pred cccHHHHHHHhccc--cccCEEEEECCHHHHHHHHHHHHHc
Confidence 33445555443221 1345699999999999999998873
No 150
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=77.02 E-value=1.6 Score=45.17 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEecCccchHHHHHHHhhhh
Q 008159 531 GVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 531 GV~~cGp~~l~~~v~~~c~~~ 551 (575)
-||+|||+.|.+.++++.++.
T Consensus 205 ~vyiCGP~~m~~~v~~~l~~~ 225 (332)
T PRK10684 205 TVMTCGPAPYMDWVEQEVKAL 225 (332)
T ss_pred EEEEECCHHHHHHHHHHHHHc
Confidence 489999999999999998773
No 151
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=76.84 E-value=0.49 Score=42.61 Aligned_cols=47 Identities=9% Similarity=-0.144 Sum_probs=38.5
Q ss_pred cccccCCcccccccccCchhHHHHHHH-HHHH-HHhhhhhHHHHHHHHh
Q 008159 431 SEKLAAPSEKVVSKEKTPSWVADLIIL-SSFI-IAITGSTLMAILLRWR 477 (575)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~sll~~l~~-~g~~-~~~~C~~G~C~~C~~~ 477 (575)
.+++++++...++++.+..+|+++|.+ .++. ...+|+.|.||+|.+-
T Consensus 3 ~i~ltvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVl 51 (156)
T COG2080 3 PITLTVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVL 51 (156)
T ss_pred cEEEEECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEE
Confidence 467788888888899999999999985 4444 3689999999999653
No 152
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=76.79 E-value=2.1 Score=42.01 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.9
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
.--|++|||++|.++++++.++
T Consensus 210 ~~~vyvcGp~~m~~~~~~~l~~ 231 (243)
T cd06216 210 DRQVYACGPPGFLDAAEELLEA 231 (243)
T ss_pred cCeEEEECCHHHHHHHHHHHHH
Confidence 3589999999999999999887
No 153
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=76.67 E-value=0.26 Score=50.92 Aligned_cols=38 Identities=5% Similarity=-0.136 Sum_probs=31.7
Q ss_pred ccccccCchhHHHHHHHHHHHHH------hhhhhHHHHHHHHhh
Q 008159 441 VVSKEKTPSWVADLIILSSFIIA------ITGSTLMAILLRWRR 478 (575)
Q Consensus 441 ~~~~~~~~~sll~~l~~~g~~~~------~~C~~G~C~~C~~~~ 478 (575)
.+++++++.|+||+|...+..++ .+|+.|+||+|.+++
T Consensus 21 ~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i 64 (329)
T PRK12577 21 YTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI 64 (329)
T ss_pred EEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE
Confidence 44566788999999999988773 569999999998876
No 154
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=76.42 E-value=3.3 Score=40.32 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=30.6
Q ss_pred ChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhhhhhhhccCCCCCCceeeecccc
Q 008159 513 NFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 573 (575)
Q Consensus 513 n~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~~~~~~~~~~~~~~~f~fhs~~f 573 (575)
...+++.+.. ....--||+|||+.|.+++++..++.. -.-++|.|+|
T Consensus 154 ~~~~~l~~~~---~~~~~~vyicGp~~m~~~~~~~L~~~g-----------~~~~i~~e~f 200 (233)
T cd06220 154 FVTDLLKELD---LEEYDAIYVCGPEIMMYKVLEILDERG-----------VRAQFSLERY 200 (233)
T ss_pred eehHHHhhhc---ccCCCEEEEECCHHHHHHHHHHHHhcC-----------CcEEEEeccc
Confidence 3445555443 111225899999999999999987622 1456666666
No 155
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=75.03 E-value=0.33 Score=48.82 Aligned_cols=41 Identities=5% Similarity=-0.191 Sum_probs=31.8
Q ss_pred ccccccCchhHHHHHHHHHHHH------HhhhhhHHHHHHHHhhhhcC
Q 008159 441 VVSKEKTPSWVADLIILSSFII------AITGSTLMAILLRWRRLKKQ 482 (575)
Q Consensus 441 ~~~~~~~~~sll~~l~~~g~~~------~~~C~~G~C~~C~~~~~~g~ 482 (575)
..++++++.|+||+|...+... ..+|+.|+||+|.+.+ .|.
T Consensus 27 ~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~ 73 (279)
T PRK12576 27 YKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGE 73 (279)
T ss_pred EEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCc
Confidence 3445678899999999976443 4899999999998877 443
No 156
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=74.93 E-value=0.39 Score=47.98 Aligned_cols=31 Identities=10% Similarity=-0.052 Sum_probs=24.7
Q ss_pred chhHHHHHHHHH------HHHHhhhhhHHHHHHHHhh
Q 008159 448 PSWVADLIILSS------FIIAITGSTLMAILLRWRR 478 (575)
Q Consensus 448 ~~sll~~l~~~g------~~~~~~C~~G~C~~C~~~~ 478 (575)
+.|+||+|...- +.-.++|+.|+||+|..++
T Consensus 72 ~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I 108 (276)
T PLN00129 72 GPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI 108 (276)
T ss_pred CchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE
Confidence 578999998754 2235899999999998765
No 157
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=74.57 E-value=1.9 Score=42.08 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.0
Q ss_pred eeEEEecCccchHHHHHHHhhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+--||+|||+.|.+.+.++..+.
T Consensus 204 ~~~vyvCGp~~m~~~~~~~L~~~ 226 (238)
T cd06211 204 GHKAYLCGPPPMIDACIKTLMQG 226 (238)
T ss_pred cCEEEEECCHHHHHHHHHHHHHc
Confidence 34699999999999999998873
No 158
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=72.07 E-value=2.9 Score=40.30 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.7
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+--||+|||+.|.+++++...+
T Consensus 187 ~~~vyicGp~~m~~~~~~~L~~ 208 (222)
T cd06194 187 DDVVYLCGAPSMVNAVRRRAFL 208 (222)
T ss_pred CCEEEEeCCHHHHHHHHHHHHH
Confidence 4569999999999999999876
No 159
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=71.70 E-value=4.9 Score=41.90 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=19.0
Q ss_pred eEEEecCccchHHHHHHHhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~ 550 (575)
--||+|||++|.++++++..+
T Consensus 208 ~~vyiCGp~~m~~~v~~~L~~ 228 (352)
T TIGR02160 208 DEWFLCGPQAMVDDAEQALTG 228 (352)
T ss_pred CEEEEECCHHHHHHHHHHHHH
Confidence 459999999999999999876
No 160
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=71.61 E-value=0.58 Score=45.76 Aligned_cols=31 Identities=3% Similarity=-0.278 Sum_probs=24.1
Q ss_pred chhHHHHHHHHH-HH----HHhhhhhHHHHHHHHhh
Q 008159 448 PSWVADLIILSS-FI----IAITGSTLMAILLRWRR 478 (575)
Q Consensus 448 ~~sll~~l~~~g-~~----~~~~C~~G~C~~C~~~~ 478 (575)
..|+||+|.... .+ -.++|+.|+||+|..++
T Consensus 33 ~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i 68 (235)
T PRK12575 33 DRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI 68 (235)
T ss_pred CCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE
Confidence 458999998764 12 25899999999998765
No 161
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=70.09 E-value=2.6 Score=40.43 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.3
Q ss_pred eEEEecCccchHHHHHHHhhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
--||+|||+.|.++++++..+.
T Consensus 187 ~~vyiCGp~~m~~~~~~~l~~~ 208 (218)
T cd06196 187 QHFYVCGPPPMEEAINGALKEL 208 (218)
T ss_pred CEEEEECCHHHHHHHHHHHHHc
Confidence 3489999999999999999873
No 162
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=66.98 E-value=61 Score=29.76 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 008159 51 SVRYHIWLGTAMIFFATIHGGST 73 (575)
Q Consensus 51 ~~~~Hr~~g~~~~~~~~~H~~~~ 73 (575)
...+|.++|.++....++.....
T Consensus 42 ~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 42 VRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999998887643
No 163
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=66.79 E-value=4.3 Score=39.37 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.3
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+--||+|||++|.+.+.+.-++
T Consensus 196 ~~~vyiCGp~~m~~~v~~~l~~ 217 (232)
T cd06190 196 EFEFYFAGPPPMVDAVQRMLMI 217 (232)
T ss_pred ccEEEEECCHHHHHHHHHHHHH
Confidence 4679999999999999888766
No 164
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=65.29 E-value=0.71 Score=52.45 Aligned_cols=46 Identities=7% Similarity=-0.125 Sum_probs=38.0
Q ss_pred ccccCCcccccccccCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhhh
Q 008159 432 EKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGS------TLMAILLRWRRL 479 (575)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~~ 479 (575)
+++++++. .++++.++|+++++.++|+.+|..|. .|.|+.|.+++.
T Consensus 4 v~~~idg~--~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~ 55 (652)
T PRK12814 4 ISLTINGR--SVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIK 55 (652)
T ss_pred EEEEECCE--EEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEEC
Confidence 45666664 55678999999999999999999997 799999998763
No 165
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=64.84 E-value=8.7 Score=37.41 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.3
Q ss_pred ceeEEEecCccchHHHHHHHhhh
Q 008159 528 SDIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 528 ~~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
++.-|++|||+.|.+.+.++..+
T Consensus 205 ~~~~v~icGp~~mv~~v~~~l~~ 227 (241)
T cd06214 205 EFDEAFLCGPEPMMDAVEAALLE 227 (241)
T ss_pred cCcEEEEECCHHHHHHHHHHHHH
Confidence 45679999999999999999877
No 166
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=64.52 E-value=7.9 Score=38.97 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEecCccchHHHHHHHhhhh
Q 008159 531 GVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 531 GV~~cGp~~l~~~v~~~c~~~ 551 (575)
=||+|||+.|.+.+++.+++.
T Consensus 183 ~vy~CGP~~M~~~v~~~l~~~ 203 (281)
T PRK06222 183 RVVAIGPVIMMKFVAELTKPY 203 (281)
T ss_pred EEEEECCHHHHHHHHHHHHhc
Confidence 389999999999999999874
No 167
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=64.43 E-value=4.3 Score=40.05 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.5
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+--||+|||+.|.+.+.+.+.+
T Consensus 206 ~~~vy~CGp~~Mv~~~~~~l~~ 227 (248)
T PRK10926 206 TSHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999999999976
No 168
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=64.34 E-value=4.4 Score=43.01 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.0
Q ss_pred eeEEEecCccchHHHHHHHhhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+.-||+|||+.|.+.+.+...+.
T Consensus 358 ~~~vyiCGp~~m~~~v~~~L~~~ 380 (399)
T PRK13289 358 DADFYFCGPVPFMQFVAKQLLEL 380 (399)
T ss_pred CCEEEEECCHHHHHHHHHHHHHc
Confidence 45699999999999999998873
No 169
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=63.93 E-value=1.3 Score=47.97 Aligned_cols=46 Identities=7% Similarity=-0.143 Sum_probs=37.1
Q ss_pred cccCCcccccc-cccCchhHHHHHHHH-HHH-HHhhhhhHHHHHHHHhh
Q 008159 433 KLAAPSEKVVS-KEKTPSWVADLIILS-SFI-IAITGSTLMAILLRWRR 478 (575)
Q Consensus 433 ~~~~~~~~~~~-~~~~~~sll~~l~~~-g~~-~~~~C~~G~C~~C~~~~ 478 (575)
++.+++..+++ +++++.+|++.|... |+. +..+|+.|.||+|.+-+
T Consensus 2 ~~~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 2 RFFLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred EEEECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 45667777777 588999999999974 543 58999999999998766
No 170
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=63.66 E-value=0.83 Score=51.44 Aligned_cols=40 Identities=5% Similarity=-0.249 Sum_probs=35.7
Q ss_pred cccccccCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhhh
Q 008159 440 KVVSKEKTPSWVADLIILSSFIIAITGS------TLMAILLRWRRL 479 (575)
Q Consensus 440 ~~~~~~~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~~ 479 (575)
++++++++++|+++++.++|+.+|.-|. .|.|..|.+++.
T Consensus 5 g~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~ 50 (603)
T TIGR01973 5 GKELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE 50 (603)
T ss_pred CEEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC
Confidence 3566788999999999999999999997 999999998874
No 171
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=63.12 E-value=6.7 Score=39.41 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=27.5
Q ss_pred CCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhh
Q 008159 510 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 510 ~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
++++.+.|-..+.....+ ++=|++|||++|.+.++...-+
T Consensus 235 g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le 274 (286)
T KOG0534|consen 235 GFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLE 274 (286)
T ss_pred CccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHH
Confidence 677766665555444444 7889999999999865544433
No 172
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=60.37 E-value=0.95 Score=51.65 Aligned_cols=46 Identities=7% Similarity=-0.255 Sum_probs=38.3
Q ss_pred cccCCcccccccccCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhhhh
Q 008159 433 KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGS------TLMAILLRWRRLK 480 (575)
Q Consensus 433 ~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~~~ 480 (575)
++++++ +++++++++|+||+++++|+.+|.-|- .|.|..|.+.+..
T Consensus 3 ~~~Idg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~ 54 (687)
T PRK09130 3 KLKVDG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKG 54 (687)
T ss_pred EEEECC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECC
Confidence 344444 566789999999999999999999996 8999999988753
No 173
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=60.29 E-value=5.7 Score=37.98 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.2
Q ss_pred ceeEEEecCccchHHHHHHHhhh
Q 008159 528 SDIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 528 ~~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
++.-||+|||+.|.+.+++...+
T Consensus 190 ~~~~~yvCGp~~m~~~~~~~L~~ 212 (223)
T cd00322 190 SGALVYICGPPAMAKAVREALVS 212 (223)
T ss_pred cCCEEEEECCHHHHHHHHHHHHH
Confidence 45679999999999999999876
No 174
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=57.75 E-value=0.45 Score=32.53 Aligned_cols=19 Identities=0% Similarity=-0.422 Sum_probs=13.7
Q ss_pred HhhhhhHHHHHHHHhhhhc
Q 008159 463 AITGSTLMAILLRWRRLKK 481 (575)
Q Consensus 463 ~~~C~~G~C~~C~~~~~~g 481 (575)
.|+|+.|+|+.|.++...+
T Consensus 3 ~M~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 3 RMACGVGACGGCVVPVKDG 21 (40)
T ss_dssp --SSSSSSS-TTEEECSST
T ss_pred cccCCCcEeCCcEeeeecC
Confidence 4799999999998877654
No 175
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=57.48 E-value=15 Score=27.74 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=26.3
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 008159 43 LLGIQFEASVRYHIWLGTAMIFFATIHGGS 72 (575)
Q Consensus 43 ~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~ 72 (575)
+.|.+.+.....|.|.|.++++++.+|...
T Consensus 33 ~~~~~~~~~~~iH~~~g~~~~~l~~~Hl~l 62 (64)
T PF14358_consen 33 FLGLNKHFWRNIHLWAGYLFLILIILHLGL 62 (64)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788999999999999999999864
No 176
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=57.08 E-value=12 Score=37.83 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.4
Q ss_pred eEEEecCccchHHHHHHHhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~ 550 (575)
.-||+|||++|.+.|.+++.+
T Consensus 240 ~~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 240 THVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred cEEEEeCCchHHHHHHHHHHH
Confidence 459999999999999888876
No 177
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=56.33 E-value=7.2 Score=39.46 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=17.3
Q ss_pred eEEEecCccchHHHHHHHhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~ 550 (575)
.-||+|||+.|.+.|.+...+
T Consensus 246 ~~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 246 AQIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred cEEEEECCHHHHHHHHHHHHH
Confidence 459999999998888777665
No 178
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=55.21 E-value=7.8 Score=38.73 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=17.5
Q ss_pred EEEecCccc-hHHHHHHHhhhh
Q 008159 531 GVLVCGPES-MKESVAKTSQRK 551 (575)
Q Consensus 531 GV~~cGp~~-l~~~v~~~c~~~ 551 (575)
-||+|||+. |.+++.+++.+.
T Consensus 216 ~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 216 HIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred EEEEECCcccchHHHHHHHHHH
Confidence 699999999 988887777763
No 179
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=54.93 E-value=7.8 Score=37.78 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.9
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+-=|++|||++|.+.+++.+++
T Consensus 198 ~~~vyicGp~~mv~~v~~~l~~ 219 (235)
T cd06193 198 DGYVWIAGEAGAVRALRRHLRE 219 (235)
T ss_pred CeEEEEEccHHHHHHHHHHHHH
Confidence 4569999999999999999986
No 180
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=54.70 E-value=7.9 Score=39.55 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=16.9
Q ss_pred eEEEecCccchHHHHHHHhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~ 550 (575)
-=||+|||++|.+.+.+++.+
T Consensus 260 ~~vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 260 AHIYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred cEEEEeCCHHHHHHHHHHHHH
Confidence 348999999999877776665
No 181
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=51.97 E-value=18 Score=35.60 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=17.7
Q ss_pred EEecCccchHHHHHHHhhh
Q 008159 532 VLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 532 V~~cGp~~l~~~v~~~c~~ 550 (575)
||+|||+.|.+.+++..++
T Consensus 183 vyiCGP~~m~~~~~~~l~~ 201 (248)
T cd06219 183 VIAIGPPIMMKAVSELTRP 201 (248)
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 8999999999999998876
No 182
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=51.82 E-value=2.6 Score=49.79 Aligned_cols=47 Identities=6% Similarity=-0.214 Sum_probs=37.8
Q ss_pred ccccCCcccccccccCchhHHHHHHHHHHHH-Hhh-hhhHHHHHHHHhh
Q 008159 432 EKLAAPSEKVVSKEKTPSWVADLIILSSFII-AIT-GSTLMAILLRWRR 478 (575)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~-~~~-C~~G~C~~C~~~~ 478 (575)
+++++++...++.++++.+||+.|.+.|+.- ..+ |+.|.||+|.+-+
T Consensus 3 i~~~vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~ 51 (956)
T PRK09800 3 IHFTLNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF 51 (956)
T ss_pred EEEEECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE
Confidence 4677888888888899999999999966543 466 8899999996644
No 183
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=51.53 E-value=3.9 Score=36.47 Aligned_cols=44 Identities=11% Similarity=-0.058 Sum_probs=35.7
Q ss_pred CcccccccccCchhHHHHHHHHHHHHHhhhh-hHHHHHHHHhhhh
Q 008159 437 PSEKVVSKEKTPSWVADLIILSSFIIAITGS-TLMAILLRWRRLK 480 (575)
Q Consensus 437 ~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~-~G~C~~C~~~~~~ 480 (575)
+|....++...+.|+|+++-..+++.+-+|. .-.|.+|-+-+..
T Consensus 52 dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~ 96 (159)
T KOG3309|consen 52 DGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDE 96 (159)
T ss_pred CCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcH
Confidence 4555677888999999999999999998998 6678888665543
No 184
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=51.01 E-value=2.6 Score=49.86 Aligned_cols=44 Identities=9% Similarity=-0.183 Sum_probs=34.7
Q ss_pred cCCcccccccccCchhHHHHHHHHHHH-HHh-hhhhHHHHHHHHhh
Q 008159 435 AAPSEKVVSKEKTPSWVADLIILSSFI-IAI-TGSTLMAILLRWRR 478 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~sll~~l~~~g~~-~~~-~C~~G~C~~C~~~~ 478 (575)
++++..+++.++++.+|++.|.+.|+. +.. +|+.|.||+|.+-+
T Consensus 2 ~~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~ 47 (951)
T TIGR03313 2 TLNGAPQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF 47 (951)
T ss_pred EECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE
Confidence 456666777788899999999997654 566 69999999996544
No 185
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=50.80 E-value=10 Score=37.26 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.8
Q ss_pred EEEecCcc-chHHHHHHHhhh
Q 008159 531 GVLVCGPE-SMKESVAKTSQR 550 (575)
Q Consensus 531 GV~~cGp~-~l~~~v~~~c~~ 550 (575)
=||+|||+ .|.++|.+...+
T Consensus 204 ~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 204 AIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred EEEEECCchhhhHHHHHHHHH
Confidence 38999999 999888887665
No 186
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=50.34 E-value=1.9 Score=50.20 Aligned_cols=45 Identities=11% Similarity=-0.147 Sum_probs=38.1
Q ss_pred ccccCCcccccccccCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhh
Q 008159 432 EKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGS------TLMAILLRWRR 478 (575)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~ 478 (575)
+++++++ +.+++++++|++|++..+|+.+|.-|- .|.|..|.+.+
T Consensus 5 v~~~idg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev 55 (797)
T PRK07860 5 VTLTIDG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV 55 (797)
T ss_pred EEEEECC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE
Confidence 4555655 556778999999999999999999996 89999998877
No 187
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=50.32 E-value=10 Score=38.35 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.3
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+--||+|||+.|.+++++..++
T Consensus 212 ~~~vyiCGP~~m~~~v~~~L~~ 233 (289)
T PRK08345 212 NTYAAICGPPVMYKFVFKELIN 233 (289)
T ss_pred ccEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999999998876
No 188
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=49.78 E-value=11 Score=36.35 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=18.3
Q ss_pred CCccccCccccCCCCCCCcEEEEEEe
Q 008159 214 KFQWHSFSITSSSSVDDQTMSLIVKC 239 (575)
Q Consensus 214 ~~~~hpfSI~s~p~~~~~~l~l~Ik~ 239 (575)
+.+.|.|||+|+|...++.++|+|..
T Consensus 176 ~l~PR~YSIsSS~~~~p~~v~ltv~v 201 (219)
T PF00667_consen 176 PLQPRYYSISSSPLVHPNKVHLTVSV 201 (219)
T ss_dssp B---EEEEB-S-TTTSTTEEEEEEEE
T ss_pred CCCCcceeecccccCCCCEEEEEEEE
Confidence 34779999999998778899999986
No 189
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=49.40 E-value=11 Score=36.47 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=20.7
Q ss_pred ceeEEEecCccchHH-HHHHHhhhh
Q 008159 528 SDIGVLVCGPESMKE-SVAKTSQRK 551 (575)
Q Consensus 528 ~~vGV~~cGp~~l~~-~v~~~c~~~ 551 (575)
.+.-|++|||++|.+ ++++..++.
T Consensus 200 ~~~~~~icGp~~~~~~~~~~~l~~~ 224 (234)
T cd06183 200 EDTLVLVCGPPPMIEGAVKGLLKEL 224 (234)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHc
Confidence 456799999999999 999999863
No 190
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=49.24 E-value=11 Score=36.90 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.3
Q ss_pred eEEEecCccchHHHHHHHhhhh
Q 008159 530 IGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 530 vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
--||+|||+.|.+.+++..++.
T Consensus 179 ~~v~icGp~~mv~~~~~~l~~~ 200 (243)
T cd06192 179 DRIIVAGSDIMMKAVVEALDEW 200 (243)
T ss_pred CEEEEECCHHHHHHHHHHHHhh
Confidence 3599999999999999998774
No 191
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=48.87 E-value=11 Score=37.17 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.5
Q ss_pred eeEEEecCccchHHHHHHHhhhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQRKS 552 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~~~ 552 (575)
+--||+|||+.|.+.+.++.++..
T Consensus 190 ~~~vyicGp~~mv~~~~~~L~~~G 213 (253)
T cd06221 190 NTVAIVCGPPIMMRFVAKELLKLG 213 (253)
T ss_pred CcEEEEECCHHHHHHHHHHHHHcC
Confidence 446999999999999999998743
No 192
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=48.43 E-value=25 Score=23.45 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 008159 50 ASVRYHIWLGTAMIFFATIH 69 (575)
Q Consensus 50 ~~~~~Hr~~g~~~~~~~~~H 69 (575)
...+.|+|+|..+.++..+=
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~ 22 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVI 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35678999999877665543
No 193
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=45.94 E-value=17 Score=36.33 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=29.0
Q ss_pred ecCCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhh
Q 008159 508 FGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 508 fg~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
.++|++...+.... .... -=+|+|||..|-+.|+..+.+.
T Consensus 179 ~~g~~~~~~l~~~~---~~~~-r~~y~CGp~~fm~av~~~l~~~ 218 (266)
T COG1018 179 LQGRIDVSRLLSAA---PDGG-REVYLCGPGPFMQAVRLALEAL 218 (266)
T ss_pred ccccccHHHHhccC---CCCC-CEEEEECCHHHHHHHHHHHHHc
Confidence 35788877776442 1112 4589999999999999999763
No 194
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=45.57 E-value=14 Score=39.13 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=25.8
Q ss_pred EEEEEEec-----CCeEEEEEecCCCCcccCCeEEEEEeCC
Q 008159 176 ILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPS 211 (575)
Q Consensus 176 v~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~p~ 211 (575)
|++++.++ .++..+.+..+....|+||.++.|..+.
T Consensus 2 v~~~~~lt~~~~~~~~~~~~~~~~~~~~y~~GD~l~v~P~N 42 (384)
T cd06206 2 VVENRELTAPGVGPSKRHLELRLPDGMTYRAGDYLAVLPRN 42 (384)
T ss_pred eeeEEEcCCCCCCccEEEEEEECCCCCccCCCCEEEEECCC
Confidence 34555553 3567777776667899999999998654
No 195
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=44.21 E-value=3.9e+02 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.477 Sum_probs=24.3
Q ss_pred CchhHH-HHHHHHHHHHHHHHHHHhhhhhhhh
Q 008159 47 QFEASV-RYHIWLGTAMIFFATIHGGSTLFVW 77 (575)
Q Consensus 47 ~~~~~~-~~Hr~~g~~~~~~~~~H~~~~~~~~ 77 (575)
+++... .|--++|...+....+|+.+++...
T Consensus 159 ~~~~l~~pf~~l~gl~~~~~~~l~Ga~~l~~k 190 (346)
T COG1294 159 SFDQLLNPFALLCGLGLVLMYVLHGAAWLLLK 190 (346)
T ss_pred cHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 5778999999999999999988765
No 196
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=43.91 E-value=4.8 Score=37.86 Aligned_cols=16 Identities=0% Similarity=-0.400 Sum_probs=13.8
Q ss_pred hhhhhHHHHHHHHhhh
Q 008159 464 ITGSTLMAILLRWRRL 479 (575)
Q Consensus 464 ~~C~~G~C~~C~~~~~ 479 (575)
-+||.|+||+|..++-
T Consensus 98 RSCREGICGSCAMNI~ 113 (288)
T KOG3049|consen 98 RSCREGICGSCAMNIN 113 (288)
T ss_pred hhhhccccccceeccC
Confidence 3799999999998764
No 197
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=43.44 E-value=4.4 Score=47.42 Aligned_cols=43 Identities=0% Similarity=-0.230 Sum_probs=33.3
Q ss_pred ccCCcccccccccCchhHHHHHHH-HHH-HHHhhhhhHHHHHHHHhh
Q 008159 434 LAAPSEKVVSKEKTPSWVADLIIL-SSF-IIAITGSTLMAILLRWRR 478 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~sll~~l~~-~g~-~~~~~C~~G~C~~C~~~~ 478 (575)
+++++. .++++++++||+.|.+ .|+ .+..+|+.|.||+|.+-+
T Consensus 3 ~~~ng~--~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~ 47 (848)
T TIGR03311 3 FIVNGR--EVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV 47 (848)
T ss_pred EEECCE--EeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE
Confidence 445554 4566788999999997 465 568999999999997655
No 198
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=43.16 E-value=2.5e+02 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008159 47 QFEASVRYHIWLGTAMIFFATIHGGST 73 (575)
Q Consensus 47 ~~~~~~~~Hr~~g~~~~~~~~~H~~~~ 73 (575)
+..+...+|-|+|..++++..+..+.-
T Consensus 70 ~~~~~~SlHSwlGl~t~~L~~lQ~~~G 96 (144)
T cd08766 70 GIPNLYSLHSWLGIGTISLFGLQWLFG 96 (144)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888887777777765543
No 199
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=42.30 E-value=3.2 Score=48.02 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=34.9
Q ss_pred cccCCcccccccccCchhHHHHHHHHHHHHHhhh-----h-hHHHHHHHHhh
Q 008159 433 KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITG-----S-TLMAILLRWRR 478 (575)
Q Consensus 433 ~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C-----~-~G~C~~C~~~~ 478 (575)
++++++. ++++++++|+|+++.++|+.+|.-| . .|.|+.|.+.+
T Consensus 3 ~i~IdG~--~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV 52 (819)
T PRK08493 3 TITINGK--ECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA 52 (819)
T ss_pred EEEECCE--EEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE
Confidence 4555554 4566789999999999999999766 3 69999998876
No 200
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=42.00 E-value=25 Score=34.59 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=18.5
Q ss_pred EEEecCccchHHHHHHHhhh
Q 008159 531 GVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 531 GV~~cGp~~l~~~v~~~c~~ 550 (575)
-||+|||+.|.++++++.++
T Consensus 183 ~vyvCGp~~m~~~v~~~l~~ 202 (250)
T PRK00054 183 AIYSCGPEIMMKKVVEILKE 202 (250)
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 49999999999999999887
No 201
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=40.79 E-value=40 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 008159 49 EASVRYHIWLGTAMIFFATIHGG 71 (575)
Q Consensus 49 ~~~~~~Hr~~g~~~~~~~~~H~~ 71 (575)
....++|+|+|..+.+..++=++
T Consensus 3 ~~~~~~H~~~g~~~~~~ll~~~l 25 (34)
T PF13172_consen 3 KFWRKIHRWLGLIAAIFLLLLAL 25 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999988777665443
No 202
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=40.56 E-value=74 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008159 47 QFEASVRYHIWLGTAMIFFATIHGGST 73 (575)
Q Consensus 47 ~~~~~~~~Hr~~g~~~~~~~~~H~~~~ 73 (575)
+..+....|.|+|..++++..+-.+.-
T Consensus 65 ~~~h~~s~Hs~lGl~~~~l~~~q~~~G 91 (131)
T cd08554 65 GIANLYSLHSWLGLATVLLFLLQFLSG 91 (131)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 345667789999998888888776553
No 203
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=40.04 E-value=3 Score=48.58 Aligned_cols=45 Identities=7% Similarity=-0.152 Sum_probs=37.2
Q ss_pred cccCCcccccccccCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhhh
Q 008159 433 KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGS------TLMAILLRWRRL 479 (575)
Q Consensus 433 ~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~~ 479 (575)
++++++ +++++++++|+|++++.+|+.+|.-|- .|.|..|.+++.
T Consensus 3 ~~~idg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~ 53 (776)
T PRK09129 3 EIEIDG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVE 53 (776)
T ss_pred EEEECC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEEC
Confidence 344555 455678999999999999999999998 689999998873
No 204
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=40.03 E-value=49 Score=20.49 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008159 52 VRYHIWLGTAMIFFATIHG 70 (575)
Q Consensus 52 ~~~Hr~~g~~~~~~~~~H~ 70 (575)
+++|||++-++.++.++=+
T Consensus 2 ~~LH~w~~~i~al~~lv~~ 20 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFA 20 (27)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5789988877666655543
No 205
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=39.95 E-value=34 Score=35.91 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=16.6
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+-=||+|||++|.++|.++-.+
T Consensus 319 ~~~vYiCGp~~M~~~V~~~l~~ 340 (367)
T PLN03115 319 NTYVYMCGLKGMEKGIDDIMVS 340 (367)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH
Confidence 3459999999997777665544
No 206
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=39.47 E-value=19 Score=37.13 Aligned_cols=17 Identities=35% Similarity=0.792 Sum_probs=15.3
Q ss_pred EEEecCccchHHHHHHH
Q 008159 531 GVLVCGPESMKESVAKT 547 (575)
Q Consensus 531 GV~~cGp~~l~~~v~~~ 547 (575)
-||+|||+.|.+.|+..
T Consensus 265 ~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 265 IIMLCGPDQLLNHVAGT 281 (325)
T ss_pred EEEEeCCHHHHHHhcCC
Confidence 48999999999999766
No 207
>PRK05802 hypothetical protein; Provisional
Probab=38.80 E-value=19 Score=36.97 Aligned_cols=19 Identities=5% Similarity=0.195 Sum_probs=18.0
Q ss_pred EEecCccchHHHHHHHhhh
Q 008159 532 VLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 532 V~~cGp~~l~~~v~~~c~~ 550 (575)
||+|||+.|.+.|+++..+
T Consensus 257 vy~CGP~~M~k~v~~~l~~ 275 (320)
T PRK05802 257 IHCGGSDILHYKIIEYLDK 275 (320)
T ss_pred EEEECCHHHHHHHHHHHhh
Confidence 9999999999999999876
No 208
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=38.60 E-value=20 Score=35.58 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.7
Q ss_pred eeEEEecCccchHHHHHHHhhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~~ 551 (575)
+--|++|||+.|.+++++...+.
T Consensus 190 ~~~v~lCGp~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 190 EVQAIVVGPPIMMKFTVQELLKK 212 (261)
T ss_pred ceEEEEECCHHHHHHHHHHHHHc
Confidence 34699999999999999988763
No 209
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=38.45 E-value=20 Score=35.38 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.0
Q ss_pred ceeEEEecCccchHHHHHHHhhhhh
Q 008159 528 SDIGVLVCGPESMKESVAKTSQRKS 552 (575)
Q Consensus 528 ~~vGV~~cGp~~l~~~v~~~c~~~~ 552 (575)
+.-=|++|||+.|.+.+++...++.
T Consensus 191 ~~~~v~~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 191 EVDDVYICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred cCCEEEEECCHHHHHHHHHHHHhcC
Confidence 3456999999999999999988754
No 210
>PLN00192 aldehyde oxidase
Probab=38.04 E-value=6.9 Score=48.23 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=39.2
Q ss_pred cccccCCcccccc-cccCchhHHHHHHHH-HHH-HHhhhhhHHHHHHHHhh
Q 008159 431 SEKLAAPSEKVVS-KEKTPSWVADLIILS-SFI-IAITGSTLMAILLRWRR 478 (575)
Q Consensus 431 ~~~~~~~~~~~~~-~~~~~~sll~~l~~~-g~~-~~~~C~~G~C~~C~~~~ 478 (575)
.+++.+++...+. .++++.+||+.|... ++. ...+|+.|.||+|.+-+
T Consensus 5 ~i~~~vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v 55 (1344)
T PLN00192 5 SLVFAVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLL 55 (1344)
T ss_pred eEEEEECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEE
Confidence 4667788888877 578889999999974 544 57999999999998766
No 211
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=36.89 E-value=21 Score=37.76 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=21.3
Q ss_pred CeEEEEEecC-CCCcccCCeEEEEEeCC
Q 008159 185 KAIELILPKH-AGLKFTPTSVIFMKIPS 211 (575)
Q Consensus 185 ~~~~l~~~~~-~~~~~~pGQ~v~l~~p~ 211 (575)
++.++++..+ .++.|+||+++.|..+.
T Consensus 16 ~~~hl~l~~~~~~~~y~~GD~l~v~p~N 43 (382)
T cd06207 16 STRHIEFDLGGSGLSYETGDNLGIYPEN 43 (382)
T ss_pred eEEEEEEecCCCCCccCCCCEEEEEcCC
Confidence 4677888753 57899999999998654
No 212
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=36.82 E-value=11 Score=42.72 Aligned_cols=46 Identities=4% Similarity=-0.232 Sum_probs=35.4
Q ss_pred cccCCcccccccccCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhhhh
Q 008159 433 KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGS------TLMAILLRWRRLK 480 (575)
Q Consensus 433 ~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~~~ 480 (575)
|+.+++ +++.++.+.|+|++++.+|+++|+.|= .|.|..|.+.+-.
T Consensus 3 tI~IDG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg 54 (693)
T COG1034 3 TITIDG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEG 54 (693)
T ss_pred EEEECC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecC
Confidence 444554 566778899999999999999998883 6777777666544
No 213
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=36.37 E-value=2.5e+02 Score=26.54 Aligned_cols=25 Identities=8% Similarity=-0.055 Sum_probs=20.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhh
Q 008159 47 QFEASVRYHIWLGTAMIFFATIHGG 71 (575)
Q Consensus 47 ~~~~~~~~Hr~~g~~~~~~~~~H~~ 71 (575)
+.+.....|+++|.++++..+.+.+
T Consensus 44 ~~~~~~~~H~~~g~~~~~~~i~~~~ 68 (204)
T TIGR01583 44 ELWVAKNLHPFAGILFFISIIPMFL 68 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999888887754
No 214
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=34.90 E-value=86 Score=26.55 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHcc-----hHHhhhhhHHHHHHHHHHH-HHHHHHHhhc
Q 008159 100 GEIALVTGLVMWITSL-----PQIRRKKFEFFYYTHHLYI-IFLIFFLFHA 144 (575)
Q Consensus 100 G~i~~~~~~~~~~~S~-----~~iRr~~ye~F~~~H~l~~-~~~~~~~~H~ 144 (575)
|.++.+.+.+..+.+. ...+...++.....|...+ +.+++..+|.
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~ 52 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHG 52 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444442 2345567999999999876 5677888896
No 215
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=33.87 E-value=41 Score=35.94 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=15.4
Q ss_pred eEEEecCccch----HHHHHHHhhh
Q 008159 530 IGVLVCGPESM----KESVAKTSQR 550 (575)
Q Consensus 530 vGV~~cGp~~l----~~~v~~~c~~ 550 (575)
--||+|||+.| .+.+++++.+
T Consensus 364 ~~vYiCGp~~M~~~v~~~L~~~~~~ 388 (411)
T TIGR03224 364 TYIYICGLKGMEEGVLDAFRDVCAT 388 (411)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHH
Confidence 34999999999 5555666654
No 216
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=33.12 E-value=51 Score=34.32 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.2
Q ss_pred CeEEEEEeCCC--hhhHHHHHHHHHHh
Q 008159 284 DSLLLVAGGIG--ITPFLSILQEIASA 308 (575)
Q Consensus 284 ~~vvlIagGiG--ITP~lsil~~l~~~ 308 (575)
+++++.|||+| |.|.++++++|.++
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 47899999999 89999999999753
No 217
>PLN02680 carbon-monoxide oxygenase
Probab=32.78 E-value=3.8e+02 Score=26.14 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=21.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 008159 47 QFEASVRYHIWLGTAMIFFATIHGGSTL 74 (575)
Q Consensus 47 ~~~~~~~~Hr~~g~~~~~~~~~H~~~~~ 74 (575)
+..+.+.+|-|+|..++++..+..+.-+
T Consensus 109 ~~~nfySlHSWlGl~t~iL~~lQ~~~Gf 136 (232)
T PLN02680 109 GIDNFYSLHSWLGLACLFLFSLQWAAGF 136 (232)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999998888888765443
No 218
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=31.90 E-value=9.5 Score=47.01 Aligned_cols=48 Identities=4% Similarity=-0.208 Sum_probs=37.3
Q ss_pred ccccCCcccc-cccccCchhHHHHHHHH-HHH-HHhhhhhHHHHHHHHhhh
Q 008159 432 EKLAAPSEKV-VSKEKTPSWVADLIILS-SFI-IAITGSTLMAILLRWRRL 479 (575)
Q Consensus 432 ~~~~~~~~~~-~~~~~~~~sll~~l~~~-g~~-~~~~C~~G~C~~C~~~~~ 479 (575)
+++.+++... ...++++.+||+.|... ++. +..+|+.|.||+|.+-+-
T Consensus 3 ~~~~~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 3 LLFYVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred EEEEECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 4567777775 44678889999999973 543 579999999999987664
No 219
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=31.76 E-value=28 Score=36.46 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=21.7
Q ss_pred CeEEEEEecCC-CCcccCCeEEEEEeCCC
Q 008159 185 KAIELILPKHA-GLKFTPTSVIFMKIPSI 212 (575)
Q Consensus 185 ~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~ 212 (575)
++..+++..+. ++.|+||.++.|..+..
T Consensus 16 ~~~~i~~~~~~~~~~y~~GD~l~i~p~N~ 44 (360)
T cd06199 16 ETRHIELDLEGSGLSYEPGDALGVYPTND 44 (360)
T ss_pred cEEEEEEeCCCCCCcccCCCEEEEEcCCC
Confidence 57778887543 68999999999987543
No 220
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=31.66 E-value=29 Score=37.10 Aligned_cols=38 Identities=5% Similarity=0.137 Sum_probs=26.9
Q ss_pred eeEEEEEEec----CCeEEEEEecCC-CCcccCCeEEEEEeCC
Q 008159 174 TCILSARVFP----SKAIELILPKHA-GLKFTPTSVIFMKIPS 211 (575)
Q Consensus 174 ~~v~~~~~~~----~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~ 211 (575)
+.+++.+.++ .++..+++..+. ++.|+||+++.|..+.
T Consensus 8 ~~v~~~~~lt~~~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N 50 (416)
T cd06204 8 APVAVSRELFTGSDRSCLHIEFDISGSGIRYQTGDHLAVWPTN 50 (416)
T ss_pred eEEEEEeeccCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCC
Confidence 4556666664 256777777543 6899999999998654
No 221
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.58 E-value=3.7e+02 Score=24.04 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008159 50 ASVRYHIWLGTAMIFFATI 68 (575)
Q Consensus 50 ~~~~~Hr~~g~~~~~~~~~ 68 (575)
.....|-++..++++++++
T Consensus 39 ~~k~~H~~L~~la~~~~~~ 57 (143)
T cd08763 39 STKILHGLLHIMALVISLV 57 (143)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344555555555554444
No 222
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=31.25 E-value=1.3e+02 Score=22.54 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcchH--HhhhhhHHHHHHHHHHH-HHHHHHHhhcC
Q 008159 101 EIALVTGLVMWITSLPQ--IRRKKFEFFYYTHHLYI-IFLIFFLFHAG 145 (575)
Q Consensus 101 ~i~~~~~~~~~~~S~~~--iRr~~ye~F~~~H~l~~-~~~~~~~~H~~ 145 (575)
.+..+++++|.....+. +.......+..+|...+ +++++..+|..
T Consensus 14 ~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~Hl~ 61 (64)
T PF14358_consen 14 LVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIILHLG 61 (64)
T ss_pred HHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455544333332 34445678899999986 57788888864
No 223
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=30.40 E-value=31 Score=34.32 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.7
Q ss_pred eeEEEecCccchHHHHHHHhhh
Q 008159 529 DIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
+--||+|||+.|.+++.+.-++
T Consensus 192 ~~~vylCGp~~mv~~~~~~L~~ 213 (263)
T PRK08221 192 NMQVIVVGPPIMMKFTVLEFLK 213 (263)
T ss_pred CeEEEEECCHHHHHHHHHHHHH
Confidence 4459999999999999888765
No 224
>PF06223 Phage_tail_T: Minor tail protein T; InterPro: IPR009350 This family represents the minor tail protein T of Lambda-like viruses and their prophage. The minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerisation. The protein is essential for tail assembly but is not found in the mature virion [].
Probab=30.10 E-value=24 Score=29.43 Aligned_cols=14 Identities=36% Similarity=1.080 Sum_probs=12.2
Q ss_pred eecCCCChHHHHHHH
Q 008159 507 NFGGRPNFEEIFSEL 521 (575)
Q Consensus 507 ~fg~RPn~~~i~~~~ 521 (575)
.| +||||+.++.++
T Consensus 5 Ef-~R~dWR~MLa~M 18 (103)
T PF06223_consen 5 EF-GRPDWRRMLAEM 18 (103)
T ss_pred Hh-cCchHHHHHHhc
Confidence 46 899999999876
No 225
>PRK11281 hypothetical protein; Provisional
Probab=29.61 E-value=6e+02 Score=31.04 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=24.4
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 008159 41 FRLLGIQFEASVRYHIWLGTAMIFFATIHGG 71 (575)
Q Consensus 41 ~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~ 71 (575)
.+-||+|-+..-.++|++-+.+++...+-.+
T Consensus 606 ~~HF~w~~~~~~~~~~~~~~~~~~~~pl~~~ 636 (1113)
T PRK11281 606 ERHFGMPKEQVSHFRRQIVRLSLALLPLLFW 636 (1113)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999888877776666544
No 226
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=29.52 E-value=1.9e+02 Score=24.17 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 008159 50 ASVRYHIWLGTAMIFFATIHGGS 72 (575)
Q Consensus 50 ~~~~~Hr~~g~~~~~~~~~H~~~ 72 (575)
+...+||++|++-++.+++=+++
T Consensus 4 k~~~~HR~lGrvyv~~~~~~a~s 26 (103)
T PF10067_consen 4 KGPRLHRWLGRVYVAAMLISALS 26 (103)
T ss_pred CcccHHHhhhHHHHHHHHHHHHH
Confidence 45689999999988887755444
No 227
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=29.41 E-value=35 Score=36.32 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=21.3
Q ss_pred CeEEEEEecC--CCCcccCCeEEEEEeCCC
Q 008159 185 KAIELILPKH--AGLKFTPTSVIFMKIPSI 212 (575)
Q Consensus 185 ~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~ 212 (575)
+++.+.++.+ ++..|+||.++.|..+..
T Consensus 16 ~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~ 45 (406)
T cd06202 16 STILVKLDTNGAQELHYQPGDHVGIFPANR 45 (406)
T ss_pred eEEEEEEECCCCCCCCCCCCCEEEEEeCCC
Confidence 5667777654 478999999999987543
No 228
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=27.31 E-value=37 Score=40.46 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEecCccchHHHHHHHhhhhh
Q 008159 531 GVLVCGPESMKESVAKTSQRKS 552 (575)
Q Consensus 531 GV~~cGp~~l~~~v~~~c~~~~ 552 (575)
-||+|||+.|.+.|++++.+..
T Consensus 849 ~Vy~CGP~~Mmkav~~~l~~~G 870 (944)
T PRK12779 849 EVIAIGPPLMMRAVSDLTKPYG 870 (944)
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 3999999999999999998743
No 229
>TIGR01715 phage_lam_T phage tail assembly protein T. This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion.
Probab=26.81 E-value=33 Score=28.35 Aligned_cols=12 Identities=25% Similarity=0.908 Sum_probs=10.9
Q ss_pred CCCChHHHHHHH
Q 008159 510 GRPNFEEIFSEL 521 (575)
Q Consensus 510 ~RPn~~~i~~~~ 521 (575)
+||||+.++.++
T Consensus 2 ~rpdWR~mLa~M 13 (100)
T TIGR01715 2 GRPDWRAMLAGM 13 (100)
T ss_pred CCchHHHHHHhc
Confidence 799999999876
No 230
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=26.74 E-value=4.8e+02 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 008159 47 QFEASVRYHIWLGTAMIFFATIHGGSTL 74 (575)
Q Consensus 47 ~~~~~~~~Hr~~g~~~~~~~~~H~~~~~ 74 (575)
+..+...+|-|+|...+++..+..+.-+
T Consensus 77 ~~~~fySlHSwlGl~t~~l~~lQ~~~Gf 104 (153)
T cd08765 77 NIPNMYSLHSWVGLAAVILYPLQLVLGI 104 (153)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877765443
No 231
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=26.58 E-value=18 Score=36.28 Aligned_cols=46 Identities=0% Similarity=-0.198 Sum_probs=36.7
Q ss_pred cccccCCcccccccc-cCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHhh
Q 008159 431 SEKLAAPSEKVVSKE-KTPSWVADLIILSSFIIAITGS------TLMAILLRWRR 478 (575)
Q Consensus 431 ~~~~~~~~~~~~~~~-~~~~sll~~l~~~g~~~~~~C~------~G~C~~C~~~~ 478 (575)
.+.+.+++ +++++ ++++|+||++.++|+.+|.-|- .|.|..|.+.+
T Consensus 68 ~~~I~IDG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV 120 (297)
T PTZ00305 68 RAIMFVNK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV 120 (297)
T ss_pred ceEEEECC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE
Confidence 45566655 55666 7889999999999999998884 67788888776
No 232
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=26.00 E-value=4.9e+02 Score=24.41 Aligned_cols=24 Identities=13% Similarity=-0.137 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q 008159 49 EASVRYHIWLGTAMIFFATIHGGS 72 (575)
Q Consensus 49 ~~~~~~Hr~~g~~~~~~~~~H~~~ 72 (575)
+....+|+++|.++.+..++..+.
T Consensus 46 ~~~~~~H~~~G~~~~~l~l~rl~~ 69 (211)
T TIGR02125 46 GYIRFVHFAAGFVLIAVLLFRVYL 69 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346688999999998888877643
No 233
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=25.99 E-value=1.3e+03 Score=28.36 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=34.1
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhHHHHH-HhhcccchhHHHHHHHHHHHHH
Q 008159 43 LLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWR-WQKTGRIYLAGEIALVTGLVMW 111 (575)
Q Consensus 43 ~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~~~~~~~ 111 (575)
+.|++++..-..=-.++..+.+-..+|...++... .+...+.... ....+...+.|.+..++++++.
T Consensus 1012 lwgI~LnaVS~vnLimsIGisVefsaHI~~~F~~~--~~~r~eR~~~AL~~~G~pVl~g~lTT~lGvlvL 1079 (1145)
T TIGR00918 1012 LLGIKLSAIPVVILIASVGIGVEFTVHIALGFLTA--IGDRNRRAVLALEHMFAPVLDGALSTLLGVLML 1079 (1145)
T ss_pred HHcCCccHHHHHHHHHHHhhhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 56888886655555566666666777865443211 1111111211 1224445566766555554443
No 234
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=25.95 E-value=40 Score=34.22 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=15.7
Q ss_pred eeEEEecCccchHH-HHHHHhhh
Q 008159 529 DIGVLVCGPESMKE-SVAKTSQR 550 (575)
Q Consensus 529 ~vGV~~cGp~~l~~-~v~~~c~~ 550 (575)
+.-||+|||+.|.+ .+.+.-.+
T Consensus 267 ~~~vyiCGp~~mv~~~~~~~L~~ 289 (300)
T PTZ00319 267 KVMALMCGPPPMLQMAVKPNLEK 289 (300)
T ss_pred CeEEEEECCHHHHHHHHHHHHHH
Confidence 45699999999987 55544343
No 235
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=24.73 E-value=68 Score=34.90 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=51.2
Q ss_pred ceeeeeeecCCCChHHHHHHHHhhcCC-ceeEEEe-cCccchHHHHHHHhhhhhhhhhccCCCCCCceeeecccc
Q 008159 501 EEEHEINFGGRPNFEEIFSELEKETAG-SDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 573 (575)
Q Consensus 501 v~~~~v~fg~RPn~~~i~~~~~~~~~~-~~vGV~~-cGp~~l~~~v~~~c~~~~~~~~~~~~~~~~~f~fhs~~f 573 (575)
.++.++-||+..++++.+.++.++++. +-|+|+- |-++.+.+++...|++.... ...+-+.+++..|
T Consensus 106 l~E~diVfGGe~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~~~------~~~pVi~v~t~gf 174 (466)
T TIGR01282 106 FQEKDIVFGGDKKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKASKE------LGKPVVPVRCEGF 174 (466)
T ss_pred CCccceecCcHHHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHhhh------cCCcEEEEeCCCc
Confidence 455678899999999999999999875 6788876 66667789999999885421 1246677777777
No 236
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.65 E-value=62 Score=34.68 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=49.7
Q ss_pred ceeeeeeecCCCChHHHHHHHHhhcCC-ceeEEEe-cCccchHHHHHHHhhhhhhhhhccCCCCCCceeeecccc
Q 008159 501 EEEHEINFGGRPNFEEIFSELEKETAG-SDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 573 (575)
Q Consensus 501 v~~~~v~fg~RPn~~~i~~~~~~~~~~-~~vGV~~-cGp~~l~~~v~~~c~~~~~~~~~~~~~~~~~f~fhs~~f 573 (575)
..+.++-||+..++++.++++.++++. +-|+|.- |-|+.+.+++...|++.... ...+-+.++...|
T Consensus 73 l~E~dvVfGg~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~------~~~pvi~v~t~gf 141 (421)
T cd01976 73 FQEKDIVFGGDKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASKE------LGIPVVPVRCEGF 141 (421)
T ss_pred CCccceecCCHHHHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHHHHHHHHh------hCCCEEEEeCCCc
Confidence 455578899999999999999999876 6788776 66677789999999874421 1234566666655
No 237
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=24.60 E-value=44 Score=38.77 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.5
Q ss_pred EEecCccchHHHHHHHhhhh
Q 008159 532 VLVCGPESMKESVAKTSQRK 551 (575)
Q Consensus 532 V~~cGp~~l~~~v~~~c~~~ 551 (575)
||+|||+.|.+.+++++++.
T Consensus 184 vy~CGP~~M~~~v~~~l~~~ 203 (752)
T PRK12778 184 VFAIGPAIMMKFVCLLTKKY 203 (752)
T ss_pred EEEECCHHHHHHHHHHHHHc
Confidence 89999999999999999874
No 238
>PLN02351 cytochromes b561 family protein
Probab=23.27 E-value=2.9e+02 Score=27.07 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 008159 48 FEASVRYHIWLGTAMIFFATIHGGS 72 (575)
Q Consensus 48 ~~~~~~~Hr~~g~~~~~~~~~H~~~ 72 (575)
..+.+.+|-|+|..++++..+..+.
T Consensus 113 i~nlySLHSWlGl~tv~Lf~lQwv~ 137 (242)
T PLN02351 113 VANFYSLHSWMGLICVSLFGAQWLT 137 (242)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777766666666443
No 239
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=22.58 E-value=50 Score=37.16 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=27.1
Q ss_pred eeEEEEEEecC-----CeEEEEEecC-CCCcccCCeEEEEEeCC
Q 008159 174 TCILSARVFPS-----KAIELILPKH-AGLKFTPTSVIFMKIPS 211 (575)
Q Consensus 174 ~~v~~~~~~~~-----~~~~l~~~~~-~~~~~~pGQ~v~l~~p~ 211 (575)
..|++.+.+++ ++..+++..+ .+..|+||+++-|..+.
T Consensus 237 a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N 280 (597)
T TIGR01931 237 AEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKN 280 (597)
T ss_pred EEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCC
Confidence 45666676652 4677777643 46899999999998654
No 240
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=22.27 E-value=52 Score=40.31 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.0
Q ss_pred ceeEEEecCccchHHHHHHHhhh
Q 008159 528 SDIGVLVCGPESMKESVAKTSQR 550 (575)
Q Consensus 528 ~~vGV~~cGp~~l~~~v~~~c~~ 550 (575)
++.-||+|||+.|.+++.+...+
T Consensus 1128 ~~~~vyiCGP~~mv~~v~~~L~~ 1150 (1167)
T PTZ00306 1128 KDLLVAICGPPVMQRAVKADLLA 1150 (1167)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH
Confidence 34569999999999999999876
No 241
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.84 E-value=6.6e+02 Score=23.45 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=16.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhh
Q 008159 47 QFEASVRYHIWLGTAMIFFATIHGGS 72 (575)
Q Consensus 47 ~~~~~~~~Hr~~g~~~~~~~~~H~~~ 72 (575)
+.++.+.+|-|+|..++.+..+..+.
T Consensus 100 ~~~nlySlHSWlGl~t~~Lf~lQ~~~ 125 (179)
T cd08762 100 HTANLYSLHSWVGICTVALFTCQWVM 125 (179)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34666666777777666666665443
No 242
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=21.83 E-value=6.9e+02 Score=23.70 Aligned_cols=25 Identities=16% Similarity=-0.020 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 008159 48 FEASVRYHIWLGTAMIFFATIHGGS 72 (575)
Q Consensus 48 ~~~~~~~Hr~~g~~~~~~~~~H~~~ 72 (575)
.+.....|++.|.+.++..+++...
T Consensus 50 ~~~~r~iH~~~g~i~~~~~~~~~~~ 74 (211)
T PRK10639 50 PQLARILHPFVGVVMFASFIIMFFR 74 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556668999999999999988654
No 243
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=21.78 E-value=3.1e+02 Score=23.23 Aligned_cols=57 Identities=12% Similarity=0.283 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhHHHHHHhhcccchhHHHHHHHHHHHHHHHcchHHhhhh
Q 008159 49 EASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKK 122 (575)
Q Consensus 49 ~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~S~~~iRr~~ 122 (575)
.....=|.|.+.++++. .+|++.... .. .+ ....|.+.++.-+++.+.++-++|.+.
T Consensus 50 ~g~~~t~~W~sfv~L~Y-F~~gv~~a~--~~-------------~~-~~~~a~~e~~ls~~lF~~~~~y~R~r~ 106 (109)
T PF09842_consen 50 RGRPYTYAWASFVILLY-FIHGVTRAW--SD-------------PG-ERWLAWLELLLSVLLFVGAMLYARWRG 106 (109)
T ss_pred cCCHHHHHHHHHHHHHH-HHHHHHHHh--cC-------------cc-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556688988876654 457764321 11 11 124567777777777788888888654
No 244
>MTH00156 CYTB cytochrome b; Provisional
Probab=21.77 E-value=6.4e+02 Score=26.35 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008159 53 RYHIWLGTAMIFFATIHGGS 72 (575)
Q Consensus 53 ~~Hr~~g~~~~~~~~~H~~~ 72 (575)
..|+|-+-++++.+.+|..-
T Consensus 71 ~~H~~gas~~~~~~~lH~~r 90 (356)
T MTH00156 71 TLHANGASFFFICIYLHIGR 90 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999764
No 245
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=21.70 E-value=98 Score=37.26 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.0
Q ss_pred EEecCccchHHHHHHHhhhhh
Q 008159 532 VLVCGPESMKESVAKTSQRKS 552 (575)
Q Consensus 532 V~~cGp~~l~~~v~~~c~~~~ 552 (575)
||+|||+.|.+.|+++.+++.
T Consensus 184 vy~CGP~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 184 VVAIGPLPMMNACVETTRPFG 204 (1006)
T ss_pred EEEECCHHHHHHHHHHHHHCC
Confidence 999999999999999988653
No 246
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=21.42 E-value=61 Score=34.44 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=21.1
Q ss_pred CCeEEEEEecC-CCCcccCCeEEEEEeCC
Q 008159 184 SKAIELILPKH-AGLKFTPTSVIFMKIPS 211 (575)
Q Consensus 184 ~~~~~l~~~~~-~~~~~~pGQ~v~l~~p~ 211 (575)
.++.++.++.. .+..|+||.++.|..+.
T Consensus 15 ~~~~~i~~~~~~~~~~y~~GD~l~V~p~N 43 (398)
T cd06203 15 KTVVDLTLDLSPTGFDYQPGDTIGILPPN 43 (398)
T ss_pred ceEEEEEEecCCCCCcCCCCCEEEEeCCC
Confidence 45677777642 46899999999998654
No 247
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=21.37 E-value=84 Score=29.36 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=24.6
Q ss_pred cCCCChHHHHHHHHhhcCCceeEEEecCc
Q 008159 509 GGRPNFEEIFSELEKETAGSDIGVLVCGP 537 (575)
Q Consensus 509 g~RPn~~~i~~~~~~~~~~~~vGV~~cGp 537 (575)
+.||..+.+|..+++.....-+||..+|-
T Consensus 97 ~~~psiD~lf~SlA~~~g~~~i~ViLsG~ 125 (182)
T PF01339_consen 97 GYRPSIDVLFRSLAEVYGPRAIGVILSGM 125 (182)
T ss_dssp TBSS-HHHHHHHHHHHCGGGEEEEE-SBS
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEecCC
Confidence 47999999999999998888899999886
No 248
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.93 E-value=7.5e+02 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 008159 49 EASVRYHIWLGTAMIFFATIHGG 71 (575)
Q Consensus 49 ~~~~~~Hr~~g~~~~~~~~~H~~ 71 (575)
.+...+|-|+|...+++..+-.+
T Consensus 91 ~hfySlHSwlGl~t~~L~~lQ~~ 113 (214)
T cd08764 91 PNMYSLHSWLGLTAVILFSLQWV 113 (214)
T ss_pred CcccchHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554433
No 249
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=20.70 E-value=5.4e+02 Score=22.03 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhC--CCchhHHHH-HHHHHHHHHHHHHH
Q 008159 20 GLLAEACLALLLLPILRGLSLFRLLG--IQFEASVRY-HIWLGTAMIFFATI 68 (575)
Q Consensus 20 G~~a~~~~~ll~l~~~R~~~~~~~~g--~~~~~~~~~-Hr~~g~~~~~~~~~ 68 (575)
|.++....|.+++..+=-.|+. +++ .+||+..-| |-|+|.++++..++
T Consensus 18 Gm~sAl~~PvlIll~GillPlG-~~~~a~~y~~i~aFa~s~iG~l~ll~~i~ 68 (115)
T cd00547 18 GMWSAIVTPVLILLLGILLPLG-LIPAALSYDRIIAFAQSWIGKLFLLVLII 68 (115)
T ss_pred hhHHHHHHHHHHHHHHHHHhcc-CcccccCHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666666666555444444 333 578888776 67889887766554
No 250
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=20.31 E-value=1.5e+03 Score=28.16 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=20.1
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008159 42 RLLGIQFEASVRYHIWLGTAMIFFATIHGGST 73 (575)
Q Consensus 42 ~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~ 73 (575)
.+.|++.+..-..=-.++..+.+-...|..-+
T Consensus 1095 ~~~gisLN~vSlv~Li~avGisV~f~~hI~~~ 1126 (1204)
T TIGR00917 1095 HLWNISLNAVSVVNLVMAKGISIEFCSHINAQ 1126 (1204)
T ss_pred HHhCCCHhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46688887776555555555566666665543
Done!