Query 008160
Match_columns 575
No_of_seqs 254 out of 835
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 20:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06398 PB1_Joka2 The PB1 doma 99.9 1.6E-21 3.4E-26 169.5 11.5 86 5-91 1-91 (91)
2 cd06401 PB1_TFG The PB1 domain 99.8 6.8E-19 1.5E-23 149.9 10.1 79 5-89 1-81 (81)
3 cd06397 PB1_UP1 Uncharacterize 99.7 7.8E-18 1.7E-22 142.9 8.7 73 5-84 1-73 (82)
4 smart00666 PB1 PB1 domain. Pho 99.5 2.8E-13 6.1E-18 112.8 9.6 76 4-86 1-80 (81)
5 cd02344 ZZ_HERC2 Zinc finger, 99.5 2.8E-14 6.1E-19 109.8 3.2 43 380-422 1-45 (45)
6 cd06402 PB1_p62 The PB1 domain 99.5 3.9E-13 8.5E-18 116.5 10.6 80 5-88 1-86 (87)
7 cd02342 ZZ_UBA_plant Zinc fing 99.5 2.8E-14 6E-19 108.5 2.8 43 380-422 1-43 (43)
8 PF00564 PB1: PB1 domain; Int 99.5 6E-13 1.3E-17 111.0 11.0 78 4-88 1-83 (84)
9 cd06407 PB1_NLP A PB1 domain i 99.4 2E-12 4.3E-17 110.8 10.4 77 5-87 1-81 (82)
10 cd06396 PB1_NBR1 The PB1 domai 99.4 2.2E-12 4.7E-17 110.6 10.3 76 5-87 1-79 (81)
11 cd05992 PB1 The PB1 domain is 99.4 2.2E-12 4.7E-17 106.9 9.9 76 5-86 1-80 (81)
12 KOG4582 Uncharacterized conser 99.3 1.5E-12 3.2E-17 133.4 6.5 110 370-489 138-261 (278)
13 cd02339 ZZ_Mind_bomb Zinc fing 99.3 1.1E-12 2.3E-17 101.0 3.3 43 380-422 1-45 (45)
14 cd02340 ZZ_NBR1_like Zinc fing 99.3 1.6E-12 3.4E-17 99.0 3.1 42 380-422 1-43 (43)
15 PF00569 ZZ: Zinc finger, ZZ t 99.2 3.5E-12 7.6E-17 98.0 2.8 44 376-419 1-46 (46)
16 cd02334 ZZ_dystrophin Zinc fin 99.2 4E-12 8.6E-17 99.5 2.9 42 380-421 1-48 (49)
17 cd06404 PB1_aPKC PB1 domain is 99.2 5.9E-11 1.3E-15 102.0 9.7 65 5-75 1-65 (83)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 99.2 6.6E-12 1.4E-16 97.8 3.2 43 380-422 1-48 (48)
19 cd06403 PB1_Par6 The PB1 domai 99.2 8.1E-11 1.8E-15 100.3 9.4 78 6-88 2-79 (80)
20 KOG4351 Uncharacterized conser 99.1 2.2E-11 4.7E-16 121.2 3.4 98 463-565 108-210 (244)
21 cd02338 ZZ_PCMF_like Zinc fing 99.1 3.5E-11 7.5E-16 93.9 3.4 42 380-421 1-48 (49)
22 cd02345 ZZ_dah Zinc finger, ZZ 99.1 5.1E-11 1.1E-15 93.0 2.4 42 380-421 1-48 (49)
23 cd06408 PB1_NoxR The PB1 domai 99.0 1.4E-09 3.1E-14 94.3 7.8 62 4-74 2-63 (86)
24 cd02249 ZZ Zinc finger, ZZ typ 98.9 4.9E-10 1.1E-14 85.9 3.2 42 380-422 1-46 (46)
25 cd02335 ZZ_ADA2 Zinc finger, Z 98.9 8.4E-10 1.8E-14 85.9 3.2 43 380-422 1-49 (49)
26 smart00291 ZnF_ZZ Zinc-binding 98.9 8.9E-10 1.9E-14 83.9 3.1 37 377-414 2-38 (44)
27 cd02343 ZZ_EF Zinc finger, ZZ 98.9 7.3E-10 1.6E-14 86.6 2.5 40 380-420 1-46 (48)
28 KOG1280 Uncharacterized conser 98.9 1.1E-09 2.3E-14 114.4 3.3 52 375-426 4-61 (381)
29 cd02337 ZZ_CBP Zinc finger, ZZ 98.8 1E-09 2.2E-14 83.0 1.7 41 380-422 1-41 (41)
30 KOG4351 Uncharacterized conser 98.5 4.2E-08 9E-13 98.1 3.5 77 446-544 43-121 (244)
31 KOG4286 Dystrophin-like protei 98.4 1.2E-07 2.5E-12 106.9 1.2 54 372-426 597-656 (966)
32 cd06409 PB1_MUG70 The MUG70 pr 98.1 1.4E-05 3.1E-10 69.6 9.2 69 12-86 9-83 (86)
33 cd06406 PB1_P67 A PB1 domain i 98.0 2.7E-05 5.9E-10 67.1 7.5 73 5-87 3-76 (80)
34 KOG4301 Beta-dystrobrevin [Cyt 97.5 1.8E-05 3.9E-10 83.4 -0.4 42 372-414 234-275 (434)
35 KOG0457 Histone acetyltransfer 97.5 4.1E-05 9E-10 82.7 2.1 45 379-424 14-65 (438)
36 cd06410 PB1_UP2 Uncharacterize 97.1 0.0027 5.8E-08 56.5 9.0 73 8-88 16-96 (97)
37 cd02336 ZZ_RSC8 Zinc finger, Z 97.1 0.00029 6.4E-09 54.6 2.4 34 380-414 1-34 (45)
38 KOG3606 Cell polarity protein 96.6 0.0025 5.3E-08 66.2 4.7 86 3-93 17-102 (358)
39 COG5114 Histone acetyltransfer 96.4 0.0014 3.1E-08 69.0 1.8 47 379-425 5-57 (432)
40 cd06399 PB1_P40 The PB1 domain 96.2 0.015 3.2E-07 51.3 6.7 59 14-77 14-72 (92)
41 KOG0695 Serine/threonine prote 95.1 0.072 1.6E-06 57.5 8.1 81 4-90 15-99 (593)
42 cd06395 PB1_Map2k5 PB1 domain 94.8 0.071 1.5E-06 46.6 5.9 44 28-73 21-64 (91)
43 cd06411 PB1_p51 The PB1 domain 91.9 0.55 1.2E-05 40.8 6.4 49 29-78 16-66 (78)
44 PF07649 C1_3: C1-like domain; 91.4 0.11 2.4E-06 36.5 1.5 28 381-410 2-30 (30)
45 PF02309 AUX_IAA: AUX/IAA fami 87.7 0.16 3.6E-06 50.5 0.0 63 5-73 110-195 (215)
46 PF03107 C1_2: C1 domain; Int 83.6 0.86 1.9E-05 32.2 2.0 27 381-409 2-29 (30)
47 PF11543 UN_NPL4: Nuclear pore 83.2 1.9 4.1E-05 37.1 4.4 50 1-58 1-50 (80)
48 KOG1778 CREB binding protein/P 78.0 0.98 2.1E-05 48.3 1.1 44 379-424 169-212 (319)
49 cd01812 BAG1_N Ubiquitin-like 77.3 5.8 0.00013 31.9 5.2 57 5-73 1-57 (71)
50 PF00643 zf-B_box: B-box zinc 74.2 3.4 7.4E-05 30.5 2.8 40 379-422 3-42 (42)
51 cd06536 CIDE_N_ICAD CIDE_N dom 73.9 12 0.00027 32.7 6.5 58 7-74 5-62 (80)
52 PF14560 Ubiquitin_2: Ubiquiti 71.5 12 0.00026 32.0 5.9 40 29-69 23-63 (87)
53 PF14874 PapD-like: Flagellar- 69.7 8.6 0.00019 33.1 4.7 35 501-535 57-91 (102)
54 PF14646 MYCBPAP: MYCBP-associ 69.5 9.9 0.00021 41.7 6.2 44 502-547 296-340 (426)
55 PF09379 FERM_N: FERM N-termin 68.8 15 0.00032 30.3 5.8 60 12-77 5-65 (80)
56 PF02017 CIDE-N: CIDE-N domain 63.0 21 0.00047 31.1 5.8 55 7-73 5-59 (78)
57 smart00213 UBQ Ubiquitin homol 62.8 18 0.00038 27.9 4.9 56 6-73 2-57 (64)
58 cd01789 Alp11_N Ubiquitin-like 62.2 40 0.00086 28.9 7.3 61 5-72 4-65 (84)
59 cd01803 Ubiquitin Ubiquitin. U 61.1 20 0.00043 29.0 5.1 71 5-88 3-73 (76)
60 PF07705 CARDB: CARDB; InterP 57.7 20 0.00043 29.9 4.6 54 463-525 23-78 (101)
61 cd01615 CIDE_N CIDE_N domain, 55.0 33 0.0007 30.0 5.5 56 7-74 5-60 (78)
62 PF02207 zf-UBR: Putative zinc 49.4 14 0.0003 30.8 2.4 33 393-425 12-48 (71)
63 smart00266 CAD Domains present 48.9 44 0.00096 29.0 5.3 56 7-74 3-58 (74)
64 KOG4151 Myosin assembly protei 47.1 12 0.00026 44.3 2.2 73 6-87 291-366 (748)
65 PF02221 E1_DerP2_DerF2: ML do 45.4 49 0.0011 29.5 5.4 35 502-536 87-123 (134)
66 cd01809 Scythe_N Ubiquitin-lik 44.7 76 0.0016 25.3 5.9 67 5-84 3-69 (72)
67 cd06535 CIDE_N_CAD CIDE_N doma 44.6 59 0.0013 28.5 5.5 49 7-64 5-53 (77)
68 cd06538 CIDE_N_FSP27 CIDE_N do 44.3 52 0.0011 28.9 5.1 55 7-74 5-59 (79)
69 PRK10301 hypothetical protein; 43.8 1E+02 0.0022 28.7 7.3 32 507-538 84-115 (124)
70 PF11976 Rad60-SLD: Ubiquitin- 43.8 1.4E+02 0.0029 24.1 7.4 58 5-72 1-58 (72)
71 TIGR03279 cyano_FeS_chp putati 42.5 47 0.001 37.3 5.8 83 5-87 45-147 (433)
72 PF11325 DUF3127: Domain of un 42.2 75 0.0016 28.1 5.8 55 465-530 21-83 (84)
73 KOG4317 Predicted Zn-finger pr 41.4 13 0.00028 40.1 1.2 32 380-415 8-40 (383)
74 PF10989 DUF2808: Protein of u 41.1 51 0.0011 31.1 5.0 26 500-525 96-122 (146)
75 PF10633 NPCBM_assoc: NPCBM-as 41.0 28 0.0006 28.9 2.9 27 502-528 45-73 (78)
76 PF14445 Prok-RING_2: Prokaryo 38.7 4.8 0.0001 32.7 -1.8 32 380-411 8-49 (57)
77 PF04234 CopC: CopC domain; I 36.3 39 0.00084 29.5 3.2 29 509-537 59-87 (97)
78 cd01806 Nedd8 Nebb8-like ubiq 36.3 1.7E+02 0.0037 23.5 6.8 70 5-87 3-72 (76)
79 cd01800 SF3a120_C Ubiquitin-li 36.1 95 0.0021 25.8 5.4 54 29-88 17-70 (76)
80 cd01799 Hoil1_N Ubiquitin-like 35.6 66 0.0014 27.2 4.4 52 8-73 8-60 (75)
81 cd00917 PG-PI_TP The phosphati 35.6 80 0.0017 28.7 5.3 38 503-545 79-118 (122)
82 smart00737 ML Domain involved 35.4 82 0.0018 27.9 5.2 34 503-536 74-109 (118)
83 PF07975 C1_4: TFIIH C1-like d 35.4 19 0.00042 29.0 1.1 30 381-412 1-38 (51)
84 PRK05461 apaG CO2+/MG2+ efflux 35.3 78 0.0017 29.8 5.2 61 463-538 50-111 (127)
85 KOG2807 RNA polymerase II tran 32.7 20 0.00044 38.8 1.0 31 381-412 332-362 (378)
86 cd00021 BBOX B-Box-type zinc f 32.5 41 0.00089 23.9 2.3 37 381-421 2-38 (39)
87 cd01792 ISG15_repeat1 ISG15 ub 32.2 1.7E+02 0.0036 24.6 6.3 75 1-86 1-75 (80)
88 PF03915 AIP3: Actin interacti 32.1 15 0.00033 40.9 0.0 120 9-146 2-124 (424)
89 COG2967 ApaG Uncharacterized p 31.6 52 0.0011 31.1 3.3 38 502-539 74-111 (126)
90 cd06405 PB1_Mekk2_3 The PB1 do 30.4 2.7E+02 0.0059 24.5 7.2 70 6-86 2-76 (79)
91 PF07929 PRiA4_ORF3: Plasmid p 29.3 99 0.0021 29.8 5.0 40 3-48 3-46 (179)
92 COG2372 CopC Uncharacterized p 28.7 1.1E+02 0.0024 29.1 5.0 37 504-540 82-118 (127)
93 PF06030 DUF916: Bacterial pro 28.1 1E+02 0.0022 28.5 4.7 30 502-531 88-119 (121)
94 PTZ00044 ubiquitin; Provisiona 27.4 1.4E+02 0.0029 24.4 4.9 71 5-88 3-73 (76)
95 cd06537 CIDE_N_B CIDE_N domain 27.1 1.3E+02 0.0027 26.7 4.8 56 7-75 5-60 (81)
96 KOG4680 Uncharacterized conser 27.1 50 0.0011 32.0 2.5 57 2-65 70-137 (153)
97 COG3603 Uncharacterized conser 26.8 1.6E+02 0.0035 28.0 5.6 59 8-74 56-115 (128)
98 PF06280 DUF1034: Fn3-like dom 25.6 1.1E+02 0.0024 27.1 4.3 34 503-536 66-104 (112)
99 PF10407 Cytokin_check_N: Cdc1 24.9 1.3E+02 0.0029 25.9 4.5 65 15-86 2-69 (73)
100 smart00396 ZnF_UBR1 Putative z 24.8 62 0.0013 27.3 2.4 29 395-423 14-46 (71)
101 cd01813 UBP_N UBP ubiquitin pr 24.8 1.9E+02 0.0042 24.2 5.4 61 5-74 1-61 (74)
102 PF12760 Zn_Tnp_IS1595: Transp 24.1 50 0.0011 25.3 1.6 26 376-401 15-44 (46)
103 PF00130 C1_1: Phorbol esters/ 23.8 69 0.0015 24.6 2.4 25 376-401 8-35 (53)
104 cd01793 Fubi Fubi ubiquitin-li 23.8 2.2E+02 0.0047 23.4 5.5 64 16-89 9-72 (74)
105 COG5259 RSC8 RSC chromatin rem 23.5 46 0.00099 37.8 1.8 39 374-414 220-258 (531)
106 KOG1356 Putative transcription 23.1 35 0.00075 41.1 0.8 37 375-413 225-261 (889)
107 cd01804 midnolin_N Ubiquitin-l 23.1 2.2E+02 0.0047 23.9 5.4 56 5-74 4-59 (78)
108 cd00029 C1 Protein kinase C co 22.6 43 0.00092 25.0 1.0 23 377-400 9-34 (50)
109 KOG1985 Vesicle coat complex C 22.6 36 0.00078 40.9 0.8 31 371-401 210-247 (887)
110 cd01794 DC_UbP_C dendritic cel 22.5 1.8E+02 0.0039 24.1 4.7 56 8-74 2-57 (70)
111 smart00336 BBOX B-Box-type zin 21.8 86 0.0019 22.5 2.4 37 380-420 4-40 (42)
112 cd00912 ML The ML (MD-2-relate 21.6 2.1E+02 0.0046 25.9 5.4 35 502-536 81-118 (127)
113 cd01796 DDI1_N DNA damage indu 21.6 2.4E+02 0.0052 23.2 5.3 66 5-82 1-67 (71)
114 smart00295 B41 Band 4.1 homolo 21.5 5E+02 0.011 24.4 8.2 80 5-90 4-88 (207)
115 COG3058 FdhE Uncharacterized p 21.5 26 0.00056 37.3 -0.6 23 391-413 207-235 (308)
116 cd01805 RAD23_N Ubiquitin-like 21.3 4.3E+02 0.0092 21.4 6.7 61 16-86 11-73 (77)
117 cd06539 CIDE_N_A CIDE_N domain 20.9 3.3E+02 0.0071 24.0 6.1 56 7-74 5-60 (78)
118 cd01763 Sumo Small ubiquitin-r 20.7 5.4E+02 0.012 22.0 7.6 72 4-87 11-83 (87)
119 cd01802 AN1_N ubiquitin-like d 20.5 2.8E+02 0.0061 24.9 5.9 55 29-89 47-101 (103)
No 1
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=99.86 E-value=1.6e-21 Score=169.54 Aligned_cols=86 Identities=60% Similarity=0.989 Sum_probs=80.3
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh-----cC
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----RL 79 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q-----~l 79 (575)
++|||+|||++|||++++++| +.++++..|++||++.|+|+++.+|+|+|+|||||+|+|++|+||.+|+.. ++
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~-~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~ 79 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRL 79 (91)
T ss_pred CEEEEEeCCEEEEEEeccccc-cCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCC
Confidence 689999999999999999866 889999999999999999999999999999999999999999999999755 48
Q ss_pred ceEEEEEEecCC
Q 008160 80 KFLRIDVHLNND 91 (575)
Q Consensus 80 ~~LritV~l~~~ 91 (575)
++|||+|+++++
T Consensus 80 ~~lrl~v~~~~~ 91 (91)
T cd06398 80 NPLRIDVTVDYD 91 (91)
T ss_pred ceEEEEEEEecC
Confidence 999999998763
No 2
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=99.78 E-value=6.8e-19 Score=149.92 Aligned_cols=79 Identities=29% Similarity=0.582 Sum_probs=70.0
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhC--CCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFN--FPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~--l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
++||+.||||+|||++|.+ ++.+.+|+++||++|+ +++.++|.|||+|+|||+|||.+++||.-| .|...+|
T Consensus 1 ~iiK~~~g~DiR~~~~~~~-----~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A-~~~~~~~ 74 (81)
T cd06401 1 LILKAQLGDDIRRIPIHNE-----DITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFA-IQCSRIL 74 (81)
T ss_pred CeEEEEeCCeEEEEeccCc-----cccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHH-HhcCcce
Confidence 5899999999999999942 4557779999999995 889999999999999999999999999965 6667889
Q ss_pred EEEEEec
Q 008160 83 RIDVHLN 89 (575)
Q Consensus 83 ritV~l~ 89 (575)
+++++++
T Consensus 75 ~l~~~~~ 81 (81)
T cd06401 75 KLTLFVN 81 (81)
T ss_pred EEEEecC
Confidence 9999864
No 3
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=99.73 E-value=7.8e-18 Score=142.94 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=65.3
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
+.+||+|+|++|||+++. ++++..|++||.++|+|++++ |.|||.|||||+|||+|++||.+|++|..+.+-+
T Consensus 1 ~~fKv~~~g~~RRf~~~~------~pt~~~L~~kl~~Lf~lp~~~-~~vtYiDeD~D~ITlssd~eL~d~~~~~~~~~~~ 73 (82)
T cd06397 1 TQFKSSFLGDTRRIVFPD------IPTWEALASKLENLYNLPEIK-VGVTYIDNDNDEITLSSNKELQDFYRLSHRESTE 73 (82)
T ss_pred CeEEEEeCCceEEEecCC------CccHHHHHHHHHHHhCCChhH-eEEEEEcCCCCEEEecchHHHHHHHHhcccccCc
Confidence 478999999999999984 778999999999999999876 9999999999999999999999998876553333
No 4
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.46 E-value=2.8e-13 Score=112.82 Aligned_cols=76 Identities=37% Similarity=0.675 Sum_probs=65.4
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhc----C
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQR----L 79 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~----l 79 (575)
.+.||++||+++|||.++. +..+.+|++||++.|++.. ..+.|+|.|||||+|+|.+|+||..|+... .
T Consensus 1 ~~~vK~~~~~~~~~~~~~~------~~s~~dL~~~i~~~~~~~~-~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~ 73 (81)
T smart00666 1 TVDVKLRYGGETRRLSVPR------DISFEDLRSKVAKRFGLDN-QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGS 73 (81)
T ss_pred CccEEEEECCEEEEEEECC------CCCHHHHHHHHHHHhCCCC-CCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCC
Confidence 3789999999999999983 5668889999999999874 789999999999999999999999984322 3
Q ss_pred ceEEEEE
Q 008160 80 KFLRIDV 86 (575)
Q Consensus 80 ~~LritV 86 (575)
+.|||.|
T Consensus 74 ~~l~l~v 80 (81)
T smart00666 74 KKLRLHV 80 (81)
T ss_pred ceEEEEe
Confidence 5687776
No 5
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.46 E-value=2.8e-14 Score=109.76 Aligned_cols=43 Identities=47% Similarity=1.020 Sum_probs=39.6
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcCCC--cccEEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGS--EADYIRI 422 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n--~H~f~rI 422 (575)
|.||+|++.||.|.||||.+|.|||||+.||....+ .|.|.||
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~~H~~~H~F~ri 45 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNTRHTFGRI 45 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCCCCcCCCCceeeC
Confidence 689999999999999999999999999999998633 7999987
No 6
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.46 E-value=3.9e-13 Score=116.50 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=68.4
Q ss_pred eEEEEEeC-----CceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhc-
Q 008160 5 MVIKVKYG-----DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQR- 78 (575)
Q Consensus 5 ~viKv~~g-----d~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~- 78 (575)
++||+-+. ..+|||.++. ....++..|+++|+++|....+.+|+|+|+|||||+|||.+++||..|+...
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~----~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDE----DVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred CeEEEeecCCCCccceEEEEecC----CCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 57899883 4799999984 3466788899999999987778999999999999999999999999986553
Q ss_pred CceEEEEEEe
Q 008160 79 LKFLRIDVHL 88 (575)
Q Consensus 79 l~~LritV~l 88 (575)
..+|||.|+.
T Consensus 77 ~~~~RlyI~~ 86 (87)
T cd06402 77 DDTFRIYIKE 86 (87)
T ss_pred CCcEEEEEEe
Confidence 5689999864
No 7
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=99.46 E-value=2.8e-14 Score=108.46 Aligned_cols=43 Identities=72% Similarity=1.507 Sum_probs=40.6
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI 422 (575)
|.||+|++.||+|.||||.+|.|||||+.||....|+..|++|
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~n~~~y~~~ 43 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMGNEGEYTRI 43 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhhhcChhheeeC
Confidence 6899999999999999999999999999999999998888875
No 8
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.46 E-value=6e-13 Score=110.98 Aligned_cols=78 Identities=42% Similarity=0.694 Sum_probs=67.7
Q ss_pred ceEEEEEeCCceee-eeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh----c
Q 008160 4 TMVIKVKYGDTLRR-FNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ----R 78 (575)
Q Consensus 4 ~~viKv~~gd~lRR-f~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q----~ 78 (575)
++.||+.|++++|| |.+.. +.++..|+.+|++.|.+. +.+|.|+|.|+|||+|+|.+|+||.+|+.+ .
T Consensus 1 t~~vK~~~~~~~~~~~~~~~------~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~~ 73 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPS------DVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKESG 73 (84)
T ss_dssp SEEEEEEETTEEEEEEEECS------TSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHCT
T ss_pred CEEEEEEECCeeEEEEEcCC------CCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhcC
Confidence 57899999999999 77773 447888999999999998 789999999999999999999999998433 3
Q ss_pred CceEEEEEEe
Q 008160 79 LKFLRIDVHL 88 (575)
Q Consensus 79 l~~LritV~l 88 (575)
.+.|||.|+-
T Consensus 74 ~~~lrl~v~~ 83 (84)
T PF00564_consen 74 SKTLRLFVQD 83 (84)
T ss_dssp TSCEEEEEEE
T ss_pred CCcEEEEEEe
Confidence 4579999864
No 9
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=99.39 E-value=2e-12 Score=110.76 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=66.5
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH----HhcCc
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM----RQRLK 80 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~----~q~l~ 80 (575)
+.|||.||++++||++.. +.++.+|+++|++.|++.....|.|+|.|+|||+|+|..|.||.+|+ .....
T Consensus 1 ~~vK~~~~~d~~r~~l~~------~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~ 74 (82)
T cd06407 1 VRVKATYGEEKIRFRLPP------SWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSH 74 (82)
T ss_pred CEEEEEeCCeEEEEEcCC------CCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCC
Confidence 479999999999999994 56799999999999999755899999999999999999999999972 22346
Q ss_pred eEEEEEE
Q 008160 81 FLRIDVH 87 (575)
Q Consensus 81 ~LritV~ 87 (575)
.+||.|+
T Consensus 75 ~v~l~v~ 81 (82)
T cd06407 75 TIRLLVH 81 (82)
T ss_pred eEEEEee
Confidence 6777763
No 10
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=99.39 E-value=2.2e-12 Score=110.58 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=66.9
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH---HHhcCce
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV---MRQRLKF 81 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a---~~q~l~~ 81 (575)
+.|||.|+++++||.+.-.+ ...+.+|..+|+..|+|. .|.|||.|+|||.|+|..+.||.+| +....+.
T Consensus 1 V~vKaty~~d~~rf~~~~~~----~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~ 73 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSE----NTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNL 73 (81)
T ss_pred CEEEEEECCeEEEEEecCCC----CCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCE
Confidence 57999999999999999522 346888999999999999 9999999999999999999999998 3445688
Q ss_pred EEEEEE
Q 008160 82 LRIDVH 87 (575)
Q Consensus 82 LritV~ 87 (575)
||+.|.
T Consensus 74 l~~~v~ 79 (81)
T cd06396 74 LQMNVY 79 (81)
T ss_pred EEEEEe
Confidence 999983
No 11
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.39 E-value=2.2e-12 Score=106.95 Aligned_cols=76 Identities=38% Similarity=0.632 Sum_probs=64.7
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhc----Cc
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQR----LK 80 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~----l~ 80 (575)
+.||++|++++|||.+.. -+.++.+|+++|++.|++.. ..+.|+|.|+|||+|+|.+|+||..|+.+. .+
T Consensus 1 ~~vK~~~~~~~~~~~~~~-----~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~ 74 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVS-----RSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSK 74 (81)
T ss_pred CcEEEEecCCCEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCc
Confidence 479999999999999993 26678889999999999986 899999999999999999999999986543 34
Q ss_pred eEEEEE
Q 008160 81 FLRIDV 86 (575)
Q Consensus 81 ~LritV 86 (575)
.|+|-|
T Consensus 75 ~l~l~v 80 (81)
T cd05992 75 KLRLFV 80 (81)
T ss_pred cEEEEe
Confidence 455544
No 12
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=99.33 E-value=1.5e-12 Score=133.44 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=73.9
Q ss_pred CcCCCcccCc-----eecCCCCCCCcccceEEeccCCCCccchhhhhcC-C-CcccEEEEeCCcccCCCCCCCCcccccC
Q 008160 370 DALMGMFHKG-----VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-G-SEADYIRIDRPVHYRHPRPFRGLYDHRQ 442 (575)
Q Consensus 370 ~a~~~~vH~G-----V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-~-n~H~f~rI~~P~~~r~p~~~~~~~~~~~ 442 (575)
++..+.+|.+ +.||+|+..+|+|.||||++|.|||||+.|++.. + -.|.|+++.+-. .. +.+... +.
T Consensus 138 ~~~~~~~H~~~~~~~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~~~h~~H~~lR~~t~~-t~----~~~~~~-~~ 211 (278)
T KOG4582|consen 138 NPVVGEMHPNISKLSVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGNEHHAAHAMLRLHTNE-TP----FSGYVM-LS 211 (278)
T ss_pred CCCccccCCCcccccccCCCccCCccccceeeecCCCccchhHHhhcCCCCCcccceeeccccc-CC----CCccee-cc
Confidence 7778999999 9999999889999999999999999999999985 4 479999965511 00 111000 00
Q ss_pred CccCCCCCCcccCCCcccCC-----ceEEEe--cCCCCCCCCCeEEEecCccCC
Q 008160 443 NFWLGTPGPDTQHVGALGAP-----HILRDR--GIKPGRSRGSQLVWIGGDKFS 489 (575)
Q Consensus 443 ~~~~~~fv~Dv~pDGt~v~P-----KtWrvr--Gs~~~WP~Gt~LvfvgGd~m~ 489 (575)
. .+.+.+...-+-.+.| +.|.++ |.. .|+.|+..-..+++...
T Consensus 212 ~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 261 (278)
T KOG4582|consen 212 S---PPNPVNLNKRPIFVGHSKVRGNDWYWTSLGGG-EGRIGRVNEIVLWINGP 261 (278)
T ss_pred C---CCCcccccccccccccccccccCCccccccCC-CCCCccccccccccccc
Confidence 0 0111111111111222 677777 666 79999999888876543
No 13
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=99.31 E-value=1.1e-12 Score=100.98 Aligned_cols=43 Identities=33% Similarity=0.694 Sum_probs=38.7
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcCC--CcccEEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG--SEADYIRI 422 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~--n~H~f~rI 422 (575)
|.||+|+..||.|.||||.+|.|||||+.||.... ..|+|.++
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~~H~~~H~f~r~ 45 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDKHDLEHRFYRY 45 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhCCCCCCCCCCEEeC
Confidence 57999998899999999999999999999998753 48999874
No 14
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=99.29 E-value=1.6e-12 Score=99.02 Aligned_cols=42 Identities=48% Similarity=0.843 Sum_probs=38.3
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcC-CCcccEEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-GSEADYIRI 422 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-~n~H~f~rI 422 (575)
|.||+|+. +|.|.||||.+|+|||||+.||... |..|+|++|
T Consensus 1 v~Cd~C~~-~i~G~ry~C~~C~d~dLC~~C~~~~~H~~H~f~~~ 43 (43)
T cd02340 1 VICDGCQG-PIVGVRYKCLVCPDYDLCESCEAKGVHPEHAMLKI 43 (43)
T ss_pred CCCCCCCC-cCcCCeEECCCCCCccchHHhhCcCCCCCCCEEeC
Confidence 58999998 9999999999999999999999985 468999875
No 15
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=99.24 E-value=3.5e-12 Score=97.99 Aligned_cols=44 Identities=43% Similarity=0.936 Sum_probs=35.0
Q ss_pred ccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC--CCcccE
Q 008160 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM--GSEADY 419 (575)
Q Consensus 376 vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~--~n~H~f 419 (575)
.|.++.||+|+..+|.|.||+|.+|.|||||..||..+ ...|.|
T Consensus 1 ~h~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~~ 46 (46)
T PF00569_consen 1 IHHGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHKM 46 (46)
T ss_dssp -CSSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSSE
T ss_pred CCCCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcCc
Confidence 48999999999889999999999999999999999984 346654
No 16
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=99.24 E-value=4e-12 Score=99.50 Aligned_cols=42 Identities=31% Similarity=0.615 Sum_probs=37.3
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIR 421 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~r 421 (575)
|.||+|++.||.|.||||++|.|||||+.||... | ..|+|+.
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp~~e 48 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMKE 48 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCeec
Confidence 5799999999999999999999999999999875 2 3688864
No 17
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=99.22 E-value=5.9e-11 Score=102.03 Aligned_cols=65 Identities=20% Similarity=0.441 Sum_probs=59.9
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~ 75 (575)
+.||+.|+||++++.+.+ .+.+..|..+|+++|+|..+-.|++||+|||||.|||.++.+|..|.
T Consensus 1 i~~K~~y~gdi~it~~d~------~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~ 65 (83)
T cd06404 1 VRVKAAYNGDIMITSIDP------SISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAF 65 (83)
T ss_pred CeEEEEecCcEEEEEcCC------CcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHH
Confidence 469999999999999996 44577799999999999999999999999999999999999999983
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.22 E-value=6.6e-12 Score=97.85 Aligned_cols=43 Identities=35% Similarity=0.848 Sum_probs=38.7
Q ss_pred eecCCCCCCCcccceEEeccCC--CCccchhhhhcC--C-CcccEEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKD--DYDLCSICFAAM--G-SEADYIRI 422 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~--DyDLC~~C~~~~--~-n~H~f~rI 422 (575)
+.||+|++.||.|.||+|.+|. |||||+.||... | ..|.|.+|
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~~H~~~H~~~~i 48 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGESHQEDHWLVKI 48 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcCCCCCCCceeeC
Confidence 4799999999999999999999 999999999986 3 47999875
No 19
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=99.20 E-value=8.1e-11 Score=100.26 Aligned_cols=78 Identities=22% Similarity=0.463 Sum_probs=69.4
Q ss_pred EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEE
Q 008160 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID 85 (575)
Q Consensus 6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lrit 85 (575)
-||.||+...|||.+.-+ . .-.+..+..+|+++++|+ +.+|+|.|.|.|||++.|..|+.|.+|+...-..|||.
T Consensus 2 eVKSkfdaEfRRFsl~r~--~--~~~f~ef~~ll~~lH~l~-~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~plLRl~ 76 (80)
T cd06403 2 EVKSKFDAEFRRFSLDRN--K--PGKFEDFYKLLEHLHHIP-NVDFLIGYTDPHGDLLPINNDDNFLKALSSANPLLRIF 76 (80)
T ss_pred ceecccCCeEEEEEeccc--c--CcCHHHHHHHHHHHhCCC-CCcEEEEEeCCCCCEecccCcHHHHHHHHcCCCceEEE
Confidence 489999999999999964 2 345677999999999999 68999999999999999999999999987777889999
Q ss_pred EEe
Q 008160 86 VHL 88 (575)
Q Consensus 86 V~l 88 (575)
||.
T Consensus 77 iqr 79 (80)
T cd06403 77 IQR 79 (80)
T ss_pred EEc
Confidence 975
No 20
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2.2e-11 Score=121.17 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=80.8
Q ss_pred ceEEEe--cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCCCC
Q 008160 463 HILRDR--GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQ 540 (575)
Q Consensus 463 KtWrvr--Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~FG~ 540 (575)
+.|||+ |.. .||.|++|.+++||.+....-. . ++.+.|+|+.+|.+.+.+|.++|.|.+.||+++++|.+||+
T Consensus 108 s~WRl~n~G~~-~Wp~~~~lk~~~~d~~~~~n~~--~--~~sLdP~E~~~I~~~~s~P~e~g~~~~~~q~vt~e~~~~Ge 182 (244)
T KOG4351|consen 108 SHWRLQNSGPR-VWPSDPCLKEVSPDQIEKGNIS--S--SPSLDPQEETDILAKESRPGEVGEIPGKWQNVTSENLLYGE 182 (244)
T ss_pred eeEEEecCCce-eCCCCCcccccCCccccceeee--c--ccccCchhhhhhhhhhcCCCccccccchheeecccceeeec
Confidence 999999 999 9999999999999999754211 1 34688999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCC---cchhhhHHHHhhh
Q 008160 541 RVWVLIQVLRAL---ESIAISFEAYAFD 565 (575)
Q Consensus 541 ~lWv~I~V~~~~---~~laltqQl~~l~ 565 (575)
.||+++.++... .-+-+-|++.+|.
T Consensus 183 siwvI~~~~~ls~e~~~~~~~~~~~~l~ 210 (244)
T KOG4351|consen 183 SIWVIPAGDLLSFELSDIPIVQELEQLP 210 (244)
T ss_pred ceEEeecCCCcceeeccCccchhhhhcc
Confidence 999999974331 2233445555554
No 21
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=99.13 E-value=3.5e-11 Score=93.87 Aligned_cols=42 Identities=38% Similarity=0.759 Sum_probs=37.3
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIR 421 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~r 421 (575)
|.||+|+..||.|.||+|.+|.|||||+.||... | +.|+|+.
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~~ 48 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQC 48 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEEE
Confidence 5799999889999999999999999999999985 2 3688864
No 22
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=99.07 E-value=5.1e-11 Score=92.98 Aligned_cols=42 Identities=31% Similarity=0.588 Sum_probs=36.8
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIR 421 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~r 421 (575)
+.||+|...+|.|.||+|++|.|||||..||... | ..|+|..
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~~~H~~~H~~~~ 48 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYE 48 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCccc
Confidence 4799999889999999999999999999999975 2 3688864
No 23
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=98.98 E-value=1.4e-09 Score=94.29 Aligned_cols=62 Identities=29% Similarity=0.439 Sum_probs=57.7
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
++.|||.|++|+|=+.++. ++.+.+|..||+..|+|. ..|+|+|+|| ||.|||.|++||-.|
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~------~i~f~dL~~kIrdkf~~~--~~~~iKykDE-GD~iti~sq~DLd~A 63 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGP------DTGFADFEDKIRDKFGFK--RRLKIKMKDD-GDMITMGDQDDLDMA 63 (86)
T ss_pred cEEEEEEecCcEEEEEcCC------CCCHHHHHHHHHHHhCCC--CceEEEEEcC-CCCccccCHHHHHHH
Confidence 5789999999999999994 777999999999999996 6999999999 999999999999987
No 24
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=98.95 E-value=4.9e-10 Score=85.93 Aligned_cols=42 Identities=43% Similarity=0.937 Sum_probs=36.9
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcC--CC--cccEEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM--GS--EADYIRI 422 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~--~n--~H~f~rI 422 (575)
+.||+|+. +|.|.||+|..|.|||||..||... .+ .|+|.+|
T Consensus 1 ~~C~~C~~-~i~g~r~~C~~C~d~dLC~~Cf~~~~~~H~~~H~~~~~ 46 (46)
T cd02249 1 YSCDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGKKGHPPDHSFTEI 46 (46)
T ss_pred CCCcCCCC-CCcCCEEECCCCCCCcCHHHHHCcCcCCCCCCCCEeEC
Confidence 46999998 9999999999999999999999986 22 6888764
No 25
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.91 E-value=8.4e-10 Score=85.93 Aligned_cols=43 Identities=30% Similarity=0.568 Sum_probs=37.1
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcCC------CcccEEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG------SEADYIRI 422 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~------n~H~f~rI 422 (575)
..||+|...++.|.||+|.+|.|||||..||..+. +.|+|+.|
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~~~ 49 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYRVV 49 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeEeC
Confidence 36999999888889999999999999999999851 36888754
No 26
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=98.90 E-value=8.9e-10 Score=83.94 Aligned_cols=37 Identities=49% Similarity=0.994 Sum_probs=34.4
Q ss_pred cCceecCCCCCCCcccceEEeccCCCCccchhhhhcCC
Q 008160 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG 414 (575)
Q Consensus 377 H~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~ 414 (575)
|.++.|++|+. +|.|.||+|..|.|||||..||....
T Consensus 2 ~~~~~C~~C~~-~i~g~ry~C~~C~d~dlC~~Cf~~~~ 38 (44)
T smart00291 2 HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAKGS 38 (44)
T ss_pred CCCcCCCCCCC-CCcCCEEECCCCCCccchHHHHhCcC
Confidence 67899999998 99999999999999999999998753
No 27
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.89 E-value=7.3e-10 Score=86.58 Aligned_cols=40 Identities=28% Similarity=0.637 Sum_probs=34.3
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcCC------CcccEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG------SEADYI 420 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~------n~H~f~ 420 (575)
|.||+|.. .+.|.||||+.|+|||||+.||..+. ..|+|.
T Consensus 1 i~CdgC~~-~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm~ 46 (48)
T cd02343 1 ISCDGCDE-IAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMV 46 (48)
T ss_pred CCCCCCCC-cCCCceEECCCCCCchhHHHHHhCCccCCCCCCCCCcc
Confidence 57999997 58999999999999999999999852 357764
No 28
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=98.86 E-value=1.1e-09 Score=114.39 Aligned_cols=52 Identities=37% Similarity=0.607 Sum_probs=46.8
Q ss_pred cccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEEEeCCc
Q 008160 375 MFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIRIDRPV 426 (575)
Q Consensus 375 ~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~rI~~P~ 426 (575)
..|.||.||||+.....|.||||..|.|||||..||.+. | .+|++..|..+.
T Consensus 4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~ 61 (381)
T KOG1280|consen 4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRV 61 (381)
T ss_pred CCcCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeecc
Confidence 479999999999999999999999999999999999985 2 479998887665
No 29
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=98.84 E-value=1e-09 Score=83.04 Aligned_cols=41 Identities=24% Similarity=0.629 Sum_probs=35.7
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI 422 (575)
+.||+|.. +.|.||+|.+|+|||||..||....+.|.+++|
T Consensus 1 y~C~~C~~--~~~~r~~C~~C~dfDLC~~C~~~~~H~H~~~~~ 41 (41)
T cd02337 1 YTCNECKH--HVETRWHCTVCEDYDLCITCYNTKNHPHKMEKL 41 (41)
T ss_pred CcCCCCCC--cCCCceECCCCcchhhHHHHhCCCCCCcccccC
Confidence 36999985 779999999999999999999987778887653
No 30
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=4.2e-08 Score=98.09 Aligned_cols=77 Identities=27% Similarity=0.374 Sum_probs=62.1
Q ss_pred CCCCCCcccCCCcccCCceEEEe--cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCe
Q 008160 446 LGTPGPDTQHVGALGAPHILRDR--GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGR 523 (575)
Q Consensus 446 ~~~fv~Dv~pDGt~v~PKtWrvr--Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~ 523 (575)
++.|+.|+ |.|+|+ |++ -|+.++.|++++|+.+...-++... ...|-+.+|+|+|+||..+
T Consensus 43 ~aaF~Ld~---------knW~lqna~sv-~~d~~t~l~~m~~~~~~~~lsv~~~-----~~i~~e~~v~v~f~aP~~~-- 105 (244)
T KOG4351|consen 43 SAAFVLDM---------KNWNLQNAGSV-YWDQDTKLKSMPGMLFVASLSVKDQ-----EVIGHEGVVSVEFIAPALE-- 105 (244)
T ss_pred ccceeeec---------cceeccccccE-EEcCCCceeeccccceeeeeeecce-----eeeccccceeeeecCCCcc--
Confidence 45566664 899999 999 9999999999999988654333222 2368899999999999998
Q ss_pred EeeEEEeECCCCCCCCCeEEE
Q 008160 524 YISYWRMSSPSGVKFGQRVWV 544 (575)
Q Consensus 524 Y~SyWRL~tp~G~~FG~~lWv 544 (575)
|.++|||.+. |.++|+
T Consensus 106 y~s~WRl~n~-----G~~~Wp 121 (244)
T KOG4351|consen 106 YTSHWRLQNS-----GPRVWP 121 (244)
T ss_pred ceeeEEEecC-----CceeCC
Confidence 9999999985 667776
No 31
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=1.2e-07 Score=106.86 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=46.5
Q ss_pred CCCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEEEeCCc
Q 008160 372 LMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIRIDRPV 426 (575)
Q Consensus 372 ~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~rI~~P~ 426 (575)
.....|. ..|++|++.||+|+||+|.+|+|||+|..||..+ | .+|+|..+-.|.
T Consensus 597 aE~~kH~-~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~~pM~Ey~~~t 656 (966)
T KOG4286|consen 597 AETAKHQ-AKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMHYPMVEYCTPT 656 (966)
T ss_pred HHHHHhh-hhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCCCCceeeeCCC
Confidence 4566775 8999999999999999999999999999999985 2 379998887665
No 32
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=98.14 E-value=1.4e-05 Score=69.60 Aligned_cols=69 Identities=29% Similarity=0.439 Sum_probs=55.3
Q ss_pred CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCC--CceEEEEecCCCCeEEEcCchhHHHHH----HhcCceEEEE
Q 008160 12 GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHD--SDLTLTYVDEDGDIVTLVDDDDLCDVM----RQRLKFLRID 85 (575)
Q Consensus 12 gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d--~~~~l~Y~DeDGD~Vtl~dd~DL~~a~----~q~l~~Lrit 85 (575)
.|.+=||++... -++..|+..|.+=|++..+ ..|.|+|.|.|||+|.|..|+||.+|+ ....+.++|-
T Consensus 9 ~GrvhRf~~~~s------~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~~v~L~ 82 (86)
T cd06409 9 KGRVHRFRLRPS------ESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDLH 82 (86)
T ss_pred CCCEEEEEecCC------CCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCCEEEEE
Confidence 566778988743 2588899999999988854 799999999999999999999999972 2334656666
Q ss_pred E
Q 008160 86 V 86 (575)
Q Consensus 86 V 86 (575)
|
T Consensus 83 v 83 (86)
T cd06409 83 L 83 (86)
T ss_pred E
Confidence 6
No 33
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=97.97 E-value=2.7e-05 Score=67.08 Aligned_cols=73 Identities=27% Similarity=0.361 Sum_probs=59.1
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCC-CeEEEcCchhHHHHHHhcCceEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG-DIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDG-D~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
.||||.|.+ =|-|.+. .++.+.+|+.||.+=|+|+ .+.++|.|+||+. ++|-| .|+||.+|..|-.+ =+
T Consensus 3 ~vvKV~f~~---tIaIrvp----~~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~s~~~v~l-~d~dle~aws~~~~-~~ 72 (80)
T cd06406 3 YVVKVHFKY---TVAIQVA----RGLSYATLLQKISSKLELP-AEHITLSYKSEASGEDVIL-SDTNMEDVWSQAKD-GC 72 (80)
T ss_pred eEEEEEEEE---EEEEEcC----CCCCHHHHHHHHHHHhCCC-chhcEEEeccCCCCCccCc-ChHHHHHHHHhhcC-Ce
Confidence 799999998 3445542 4888999999999999999 5679999999985 78888 89999998777543 56
Q ss_pred EEEE
Q 008160 84 IDVH 87 (575)
Q Consensus 84 itV~ 87 (575)
||+-
T Consensus 73 lTLw 76 (80)
T cd06406 73 LTLW 76 (80)
T ss_pred EEEE
Confidence 6654
No 34
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=97.52 E-value=1.8e-05 Score=83.42 Aligned_cols=42 Identities=29% Similarity=0.679 Sum_probs=38.1
Q ss_pred CCCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcCC
Q 008160 372 LMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG 414 (575)
Q Consensus 372 ~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~ 414 (575)
...+.|+ +.|+.|...+|.|+||+|..|.+|.||+.||..++
T Consensus 234 v~nv~hp-v~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~ 275 (434)
T KOG4301|consen 234 VENVFHP-VECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGH 275 (434)
T ss_pred hcccCCC-ccCcceecccccchhhhHhhcCCccccchhhcccc
Confidence 4567786 99999999999999999999999999999999863
No 35
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.51 E-value=4.1e-05 Score=82.70 Aligned_cols=45 Identities=33% Similarity=0.619 Sum_probs=39.0
Q ss_pred ceecCCCCCCCcccce-EEeccCCCCccchhhhhcC------CCcccEEEEeC
Q 008160 379 GVRCDGCGVHPITGPR-FKSKVKDDYDLCSICFAAM------GSEADYIRIDR 424 (575)
Q Consensus 379 GV~CDgC~~~PI~G~R-YKCsvC~DyDLC~~C~~~~------~n~H~f~rI~~ 424 (575)
.+.||+|.. .|.|.. .||++|+|||||-.||..+ .+.|+|..|.+
T Consensus 14 ky~C~~C~~-dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~ 65 (438)
T KOG0457|consen 14 KYNCDYCSL-DITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDT 65 (438)
T ss_pred CCCCccHhH-HhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecC
Confidence 478999996 588887 9999999999999999985 35899988875
No 36
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=97.14 E-value=0.0027 Score=56.53 Aligned_cols=73 Identities=29% Similarity=0.468 Sum_probs=56.1
Q ss_pred EEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEe--cCCCC-eEEEcCchhHHHHHHhcC----
Q 008160 8 KVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYV--DEDGD-IVTLVDDDDLCDVMRQRL---- 79 (575)
Q Consensus 8 Kv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~--DeDGD-~Vtl~dd~DL~~a~~q~l---- 79 (575)
|++| ||+.|-..|.- ++.+..|+.|+.+.|+...+ ++|+|. +||-| +|+|.+|+||...+.-.-
T Consensus 16 ~l~Y~GG~tr~i~V~r------~~s~~el~~kl~~~~~~~~~--~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~~~~~ 87 (97)
T cd06410 16 QLRYVGGETRIVSVDR------SISFKELVSKLSELFGAGVV--VTLKYQLPDEDLDALISVSNDEDLKNMMEEYDRLSG 87 (97)
T ss_pred CEEEcCCceEEEEEcC------CCCHHHHHHHHHHHhCCCCc--eEEEEEcCCCCcceeEEecCcHHHHHHHHhhccccC
Confidence 4555 66788888873 46788899999999998854 999997 88888 999999999998653333
Q ss_pred ceEEEEEEe
Q 008160 80 KFLRIDVHL 88 (575)
Q Consensus 80 ~~LritV~l 88 (575)
+.-||.|++
T Consensus 88 ~~~rirvfl 96 (97)
T cd06410 88 GSARLRVFL 96 (97)
T ss_pred CCceEEEEE
Confidence 445665554
No 37
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=97.13 E-value=0.00029 Score=54.64 Aligned_cols=34 Identities=29% Similarity=0.645 Sum_probs=30.5
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcCC
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG 414 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~ 414 (575)
+.|+.|+. .+...||+|+.+.+||||..||.++.
T Consensus 1 y~C~~Cg~-D~t~vryh~~~~~~~dLC~~CF~~G~ 34 (45)
T cd02336 1 YHCFTCGN-DCTRVRYHNLKAKKYDLCPSCYQEGR 34 (45)
T ss_pred CcccCCCC-ccCceEEEecCCCccccChHHHhCcC
Confidence 46999996 57889999999999999999999864
No 38
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=96.59 E-value=0.0025 Score=66.17 Aligned_cols=86 Identities=24% Similarity=0.473 Sum_probs=70.9
Q ss_pred cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
+++-||-||+-.-|||.++-..-+ .|..+..-++.+-+|+ +-+|+|-|.|--||+.-|..|+-|..|+..---.|
T Consensus 17 ~~veVKSKFdaEfRRfsl~r~~~~----~f~~F~~Lv~~~H~i~-nvdvllgY~d~hgDLLPinNDDn~~ka~~sa~PlL 91 (358)
T KOG3606|consen 17 STVEVKSKFDAEFRRFSLPRHSAS----SFDEFYSLVEHLHHIP-NVDVLLGYADTHGDLLPINNDDNLHKALSSARPLL 91 (358)
T ss_pred ceEEeeccccchhheecccccCcc----cHHHHHHHHHHHhcCC-CceEEEEEecCCCceecccCchhHHHHhhccCchh
Confidence 357799999999999999965333 4555666666677787 78999999999999999999999999988877779
Q ss_pred EEEEEecCCcc
Q 008160 83 RIDVHLNNDKF 93 (575)
Q Consensus 83 ritV~l~~~~~ 93 (575)
||-||.+.++.
T Consensus 92 R~~iQkr~ea~ 102 (358)
T KOG3606|consen 92 RLLIQKREEAD 102 (358)
T ss_pred hhhhhhhhhhh
Confidence 99998776544
No 39
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.41 E-value=0.0014 Score=68.99 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=38.4
Q ss_pred ceecCCCCCCCcccceEEeccCCCCccchhhhhcC------CCcccEEEEeCC
Q 008160 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM------GSEADYIRIDRP 425 (575)
Q Consensus 379 GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~------~n~H~f~rI~~P 425 (575)
.+.||.|...-..-.+.+|..|++||||-.||.++ +..|+|..|.+-
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRiietn 57 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIETN 57 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEeecc
Confidence 36799999865667899999999999999999985 246888777643
No 40
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=96.22 E-value=0.015 Score=51.34 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=44.5
Q ss_pred ceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh
Q 008160 14 TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ 77 (575)
Q Consensus 14 ~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q 77 (575)
++|-+.++ +|=...=.+.+|..-|++.|+-. ++.|.|.|-+||+|.|-||+|+...+++
T Consensus 14 ~~rdi~ve--e~l~~~P~~kdLl~lmr~~f~~~---dIaLNYrD~EGDLIRllddeDv~LMV~~ 72 (92)
T cd06399 14 TIRDIAVE--EDLSSTPLLKDLLELTRREFQRE---DIALNYRDAEGDLIRLLSDEDVALMVRQ 72 (92)
T ss_pred cccceEee--cccccCccHHHHHHHHHHHhchh---heeeeeecCCCCEEEEcchhhHHHHHHH
Confidence 45555555 22222234678999999999855 8999999999999999999999876554
No 41
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.11 E-value=0.072 Score=57.50 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=64.2
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH---HHhc-C
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV---MRQR-L 79 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a---~~q~-l 79 (575)
.+-+|+.|++++= -.+.+ ..+.+.+|-..++..-++.-.-.|++||.|||||-+|++..-+|.+| +.+. -
T Consensus 15 ~vrlka~y~g~i~--i~~~~----p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d 88 (593)
T KOG0695|consen 15 RVRLKAHYGGDIF--ITSVD----PATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRD 88 (593)
T ss_pred cEEEEEeecCcEE--EEecc----CcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHHhccc
Confidence 5889999999984 44443 35667789988888889988899999999999999999999999987 3333 2
Q ss_pred ceEEEEEEecC
Q 008160 80 KFLRIDVHLNN 90 (575)
Q Consensus 80 ~~LritV~l~~ 90 (575)
.-|-|-|+.-.
T Consensus 89 ~el~ihvf~~~ 99 (593)
T KOG0695|consen 89 EELIIHVFPST 99 (593)
T ss_pred cceEEEEccCC
Confidence 44788887543
No 42
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=94.84 E-value=0.071 Score=46.62 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=35.3
Q ss_pred cccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 28 LDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 28 ~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
..|+|+++..-|.+++-=.. .--+-|-|||||-||.-+|++|..
T Consensus 21 ~~L~F~DvL~~I~~vlp~aT--~tAFeYEDE~gDRITVRSDeEm~A 64 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEAT--TTAFEYEDEDGDRITVRSDEEMKA 64 (91)
T ss_pred ccccHHHHHHHHHHhccccc--ccceeeccccCCeeEecchHHHHH
Confidence 46889999999999974221 223489999999999999999883
No 43
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=91.86 E-value=0.55 Score=40.78 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=40.8
Q ss_pred ccCHHHHHHHHHHHhCCCCCCceEEEEecCCCC--eEEEcCchhHHHHHHhc
Q 008160 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGD--IVTLVDDDDLCDVMRQR 78 (575)
Q Consensus 29 dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD--~Vtl~dd~DL~~a~~q~ 78 (575)
.+++..|+.||.+.|.+.++. .+|.|++++.+ +|-|.-++++.+|-.+-
T Consensus 16 g~~y~~L~~~ls~kL~l~~~~-~~LSY~~~~~~~~~v~l~~e~~me~aW~~v 66 (78)
T cd06411 16 GADVSSLRALLSQALPQQAQR-GQLSYRAPGEDGHWVPISGEESLQRAWQDV 66 (78)
T ss_pred CCCHHHHHHHHHHHhcCChhh-cEEEecCCCCCccEeecCcchHHHHHHHhc
Confidence 566888999999999999764 99999998885 77777699999985554
No 44
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=91.44 E-value=0.11 Score=36.52 Aligned_cols=28 Identities=43% Similarity=0.892 Sum_probs=13.4
Q ss_pred ecCCCCCCCccc-ceEEeccCCCCccchhhh
Q 008160 381 RCDGCGVHPITG-PRFKSKVKDDYDLCSICF 410 (575)
Q Consensus 381 ~CDgC~~~PI~G-~RYKCsvC~DyDLC~~C~ 410 (575)
.|+.|+. ++.| ..|.|..| ||+|...|.
T Consensus 2 ~C~~C~~-~~~~~~~Y~C~~C-df~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGK-PIDGGWFYRCSEC-DFDLHEECA 30 (30)
T ss_dssp --TTTS-----S--EEE-TTT------HHHH
T ss_pred cCCcCCC-cCCCCceEECccC-CCccChhcC
Confidence 6999996 6887 99999999 899988873
No 45
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=87.66 E-value=0.16 Score=50.50 Aligned_cols=63 Identities=19% Similarity=0.373 Sum_probs=0.0
Q ss_pred eEEEEEeCCc--eeeeeeccCCCCCcccCHHHHHHHHHHHh---CCC----------------CCCceEEEEecCCCCeE
Q 008160 5 MVIKVKYGDT--LRRFNARVDENEKLDLDIDGLRAKIKSLF---NFP----------------HDSDLTLTYVDEDGDIV 63 (575)
Q Consensus 5 ~viKv~~gd~--lRRf~~~~~~n~~~dl~~~~L~~ki~~~F---~l~----------------~d~~~~l~Y~DeDGD~V 63 (575)
.-+||.-.|. .|++.+..-. .+..|...+.+.| .+. ...+++|+|.|.|||+.
T Consensus 110 ~~vKV~mdG~~igRkVDL~~~~------sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~m 183 (215)
T PF02309_consen 110 SYVKVNMDGVPIGRKVDLSAYS------SYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWM 183 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEEecCcccceecCHHHhh------CHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEE
Confidence 5689998884 7887776421 3556998888888 443 34588999999999997
Q ss_pred EEcCch--hHHH
Q 008160 64 TLVDDD--DLCD 73 (575)
Q Consensus 64 tl~dd~--DL~~ 73 (575)
..-|+- +|..
T Consensus 184 lvGD~PW~~F~~ 195 (215)
T PF02309_consen 184 LVGDVPWEEFVK 195 (215)
T ss_dssp ------------
T ss_pred EecCCCHHHHHH
Confidence 777665 5543
No 46
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=83.58 E-value=0.86 Score=32.24 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.1
Q ss_pred ecCCCCCCCcccc-eEEeccCCCCccchhh
Q 008160 381 RCDGCGVHPITGP-RFKSKVKDDYDLCSIC 409 (575)
Q Consensus 381 ~CDgC~~~PI~G~-RYKCsvC~DyDLC~~C 409 (575)
.|+.|+. .+.|. .|+|..|. |+|-..|
T Consensus 2 ~C~~C~~-~~~~~~~Y~C~~c~-f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRR-KIDGFYFYHCSECC-FTLHVRC 29 (30)
T ss_pred CCCCCCC-CcCCCEeEEeCCCC-CeEcCcc
Confidence 6999996 58999 99999986 8887766
No 47
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=83.23 E-value=1.9 Score=37.10 Aligned_cols=50 Identities=24% Similarity=0.471 Sum_probs=30.5
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecC
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE 58 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~De 58 (575)
|+++++|.|+=-|-+.|+.+.-. =++.+|..||++.|+++.+ .+.| |.|.
T Consensus 1 ~~~~milRvrS~dG~~Rie~~~~------~t~~~L~~kI~~~l~~~~~-~~~L-~~~~ 50 (80)
T PF11543_consen 1 MASSMILRVRSKDGMKRIEVSPS------STLSDLKEKISEQLSIPDS-SQSL-SKDR 50 (80)
T ss_dssp -----EEEEE-SSEEEEEEE-TT------SBHHHHHHHHHHHS---TT-T----BSSG
T ss_pred CCccEEEEEECCCCCEEEEcCCc------ccHHHHHHHHHHHcCCCCc-ceEE-EecC
Confidence 89999999999999999999843 2588899999999999955 6655 5554
No 48
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=77.98 E-value=0.98 Score=48.27 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=37.1
Q ss_pred ceecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEEeC
Q 008160 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDR 424 (575)
Q Consensus 379 GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI~~ 424 (575)
...|..|... . ..+|.|.+|.+||.|..|+....+.|.|..+..
T Consensus 169 ~~~c~~c~~~-~-~~~~~c~~~~d~d~~~~~~~k~~h~h~~~~~~~ 212 (319)
T KOG1778|consen 169 AYTCPICKLE-V-LTAWHCEVCPDYDRCRACEEKPLHPHLYEAMES 212 (319)
T ss_pred eeecCccccc-c-ccccccccCCchhhhhcccCCCCCCcchhcccc
Confidence 3789999974 4 889999999999999999998877788776543
No 49
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=77.34 E-value=5.8 Score=31.86 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=39.0
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
+.|+|++++.. +.+.+.. +.+...|..+|++.+++++ ....|.|.. .. |.|+.-|.+
T Consensus 1 i~i~vk~~g~~--~~i~v~~----~~tv~~lK~~i~~~~gi~~-~~q~L~~~g---~~--l~d~~~L~~ 57 (71)
T cd01812 1 IRVRVKHGGES--HDLSISS----QATFGDLKKMLAPVTGVEP-RDQKLIFKG---KE--RDDAETLDM 57 (71)
T ss_pred CEEEEEECCEE--EEEEECC----CCcHHHHHHHHHHhhCCCh-HHeEEeeCC---cc--cCccCcHHH
Confidence 46888998655 4555542 4567889999999999986 467777863 32 455555554
No 50
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=74.22 E-value=3.4 Score=30.49 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=30.5
Q ss_pred ceecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEE
Q 008160 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (575)
Q Consensus 379 GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI 422 (575)
...|+.|... -.+|-|..|.. -+|..|....|..|.+..|
T Consensus 3 ~~~C~~H~~~---~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i 42 (42)
T PF00643_consen 3 EPKCPEHPEE---PLSLFCEDCNE-PLCSECTVSGHKGHKIVPI 42 (42)
T ss_dssp SSB-SSTTTS---BEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred CccCccCCcc---ceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence 3567777753 37799999976 5999999998888988654
No 51
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=73.87 E-value=12 Score=32.69 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=43.2
Q ss_pred EEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 7 iKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
+||+=.+.-+|+-|-.+ ++..|+.|.+..|+|+......-=|.+||| |..||+|....
T Consensus 5 fkV~~~~r~~k~GV~A~-------sL~eL~~K~~~~l~l~~~~~~~~lvL~eDG---T~VddEeyF~t 62 (80)
T cd06536 5 CVVCNVSRQKQHGVAAS-------SLEELRIKACESLGFDSSSAPITLVLAEDG---TIVEDEDYFLC 62 (80)
T ss_pred eEEecCCCCeeEeEEcC-------CHHHHHHHHHHHhCCCCCCCceEEEEecCC---cEEccHHHHhh
Confidence 67887888888888754 466699999999999954333334788899 56677777754
No 52
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=71.48 E-value=12 Score=31.95 Aligned_cols=40 Identities=30% Similarity=0.556 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHHHhCCCCCCceEEEEe-cCCCCeEEEcCch
Q 008160 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYV-DEDGDIVTLVDDD 69 (575)
Q Consensus 29 dl~~~~L~~ki~~~F~l~~d~~~~l~Y~-DeDGD~Vtl~dd~ 69 (575)
++....|..||..+|++++ ....|.|. |+++..+...+++
T Consensus 23 ~~Tv~eLK~kl~~~~Gi~~-~~m~L~l~~~~~~~~~~~~~dd 63 (87)
T PF14560_consen 23 SITVSELKQKLEKLTGIPP-SDMRLQLKSDKDDSKIEELDDD 63 (87)
T ss_dssp TSBHHHHHHHHHHHHTS-T-TTEEEEEE-TSSSSEEEESSGS
T ss_pred CCCHHHHHHHHHHHhCCCc-ccEEEEEEecCCCccccccCCC
Confidence 3457779999999999997 47777777 7777777666554
No 53
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=69.66 E-value=8.6 Score=33.05 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCC
Q 008160 501 DGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSG 535 (575)
Q Consensus 501 ~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G 535 (575)
+.|+||+++++.|.|.++...|.|...-.+..+.|
T Consensus 57 g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~ 91 (102)
T PF14874_consen 57 GFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGG 91 (102)
T ss_pred CEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCe
Confidence 46999999999999998899999999888877544
No 54
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=69.51 E-value=9.9 Score=41.70 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCCC-CeEEEEEE
Q 008160 502 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFG-QRVWVLIQ 547 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~FG-~~lWv~I~ 547 (575)
.+.|||+..|.|-|+ |..+|.|...|+|.+ .-..|| ..|-|.+.
T Consensus 296 vilPGe~~~~~~~F~-s~~~Gif~E~W~L~t-~P~l~~~~~l~v~L~ 340 (426)
T PF14646_consen 296 VILPGETRNFPFMFK-SRKVGIFKERWELRT-FPPLFGGASLTVRLH 340 (426)
T ss_pred EECCCceEEEEEEEe-CCCceEEEEEEEEEE-eccccCCCceEEEEE
Confidence 489999999999999 778999999999998 444444 55554443
No 55
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=68.85 E-value=15 Score=30.27 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=49.1
Q ss_pred CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEE-ecCCCCeEEEcCchhHHHHHHh
Q 008160 12 GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTY-VDEDGDIVTLVDDDDLCDVMRQ 77 (575)
Q Consensus 12 gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y-~DeDGD~Vtl~dd~DL~~a~~q 77 (575)
.|..+.|.++-+ -.-.+|..+|.+-++|....-|-|.| .|.+|...-|+.+.-|.+.+..
T Consensus 5 D~~~~~~~v~~~------~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 5 DGTTKTFEVDPK------TTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp SEEEEEEEEETT------SBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcEEEEEcCC------CcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 455788888843 34788999999999999999999999 8999999999999988864433
No 56
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=63.04 E-value=21 Score=31.05 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=41.5
Q ss_pred EEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 7 iKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
+||+=.+.-+|+-|-.. ++..|+.|.+..|+++. ..+.| +.+||| |+.||+|...
T Consensus 5 ~kv~~~~r~~k~Gv~A~-------sL~eL~~K~~~~l~~~~-~~~~l-vL~eDG---T~VddEeyF~ 59 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAAS-------SLEELLEKACDKLQLPE-EPVRL-VLEEDG---TEVDDEEYFQ 59 (78)
T ss_dssp EEEEETTSSCEEEEEES-------SHHHHHHHHHHHHT-SS-STCEE-EETTTT---CBESSCHHHC
T ss_pred EEEecCCCCceEeEEcC-------CHHHHHHHHHHHhCCCC-cCcEE-EEeCCC---cEEccHHHHh
Confidence 67887888888888754 46779999999999996 56666 778999 4557777663
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=62.81 E-value=18 Score=27.88 Aligned_cols=56 Identities=29% Similarity=0.376 Sum_probs=39.2
Q ss_pred EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
-|.|+..+ +.+.+.++. +.+...|..+|++.++++++ .+.|.|.. - .|.|+.-|.+
T Consensus 2 ~i~vk~~~--~~~~~~v~~----~~tv~~lk~~i~~~~~~~~~-~~~L~~~g---~--~L~d~~tL~~ 57 (64)
T smart00213 2 ELTVKTLD--GTITLEVKP----SDTVSELKEKIAELTGIPVE-QQRLIYKG---K--VLEDDRTLAD 57 (64)
T ss_pred EEEEEECC--ceEEEEECC----CCcHHHHHHHHHHHHCCCHH-HEEEEECC---E--ECCCCCCHHH
Confidence 36677777 466666643 45688899999999999864 68888863 2 3666655554
No 58
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=62.24 E-value=40 Score=28.93 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=38.6
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEE-EcCchhHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT-LVDDDDLC 72 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vt-l~dd~DL~ 72 (575)
+.|++.. +.|.+...+. ..++...|..|+.++|++++. ...|-|.|.+|..|. |+||+..+
T Consensus 4 v~i~~~~--~~~~~ekr~~----~~~Tv~~lK~kl~~~~G~~~~-~mrL~l~~~~~~~~~~l~~d~~~L 65 (84)
T cd01789 4 VNITSSA--DSFSFEKKYS----RGLTIAELKKKLELVVGTPAS-SMRLQLFDGDDKLVSKLDDDDALL 65 (84)
T ss_pred EEEEeCC--CceeeeEecC----CCCcHHHHHHHHHHHHCCCcc-ceEEEEEcCCCCeEeecCCCccEe
Confidence 5566655 2444443332 355677899999999999975 566665555565544 65555433
No 59
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=61.09 E-value=20 Score=28.97 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=46.1
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
++||..-| |.|.+.++. +.+..+|..+|++.+++++ ++..|.|. |. .|.|+..|.+.=.+....|.+
T Consensus 3 i~v~~~~g---~~~~~~v~~----~~tV~~lK~~i~~~~g~~~-~~q~L~~~---g~--~L~d~~~L~~~~i~~~~~i~l 69 (76)
T cd01803 3 IFVKTLTG---KTITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLSDYNIQKESTLHL 69 (76)
T ss_pred EEEEcCCC---CEEEEEECC----cCcHHHHHHHHHHHhCCCH-HHeEEEEC---CE--ECCCCCcHHHcCCCCCCEEEE
Confidence 45554444 445566642 4567889999999999986 46777785 33 367777777643444555666
Q ss_pred EEEe
Q 008160 85 DVHL 88 (575)
Q Consensus 85 tV~l 88 (575)
.+.+
T Consensus 70 ~~~~ 73 (76)
T cd01803 70 VLRL 73 (76)
T ss_pred EEEc
Confidence 6643
No 60
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=57.68 E-value=20 Score=29.90 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=34.0
Q ss_pred ceEEEe--cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeEe
Q 008160 463 HILRDR--GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 525 (575)
Q Consensus 463 KtWrvr--Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y~ 525 (575)
-+|+|+ |.. .. .++.+.+..++... . ...| +.|+||++..+++.+..+ .+|.|.
T Consensus 23 i~~~V~N~G~~-~~-~~~~v~~~~~~~~~--~--~~~i--~~L~~g~~~~v~~~~~~~-~~G~~~ 78 (101)
T PF07705_consen 23 ITVTVKNNGTA-DA-ENVTVRLYLDGNSV--S--TVTI--PSLAPGESETVTFTWTPP-SPGSYT 78 (101)
T ss_dssp EEEEEEE-SSS--B-EEEEEEEEETTEEE--E--EEEE--SEB-TTEEEEEEEEEE-S-S-CEEE
T ss_pred EEEEEEECCCC-CC-CCEEEEEEECCcee--c--cEEE--CCcCCCcEEEEEEEEEeC-CCCeEE
Confidence 567788 888 53 45566554433221 1 1233 579999999999999988 899987
No 61
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=54.95 E-value=33 Score=30.00 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=42.0
Q ss_pred EEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 7 iKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
+||+=.+..+|+-|-.+ ++..|+.|.++.|+|+ +..+. =|.+||| |..||+|....
T Consensus 5 ~kV~~~~r~~k~GV~A~-------sL~eL~~K~~~~l~l~-~~~~~-lvL~eDG---TeVddEeYF~t 60 (78)
T cd01615 5 FKVCDSDRSRKKGVAAS-------SLEELLSKACEKLKLP-SAPVT-LVLEEDG---TEVDDEEYFQT 60 (78)
T ss_pred EEEecCCCCeeEEEEcC-------CHHHHHHHHHHHcCCC-CCCeE-EEEeCCC---cEEccHHHHhc
Confidence 67887888888888854 4666999999999998 33443 4778889 55677777653
No 62
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=49.36 E-value=14 Score=30.82 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=23.2
Q ss_pred ceEEeccCC---CCccchhhhhcC-CCcccEEEEeCC
Q 008160 393 PRFKSKVKD---DYDLCSICFAAM-GSEADYIRIDRP 425 (575)
Q Consensus 393 ~RYKCsvC~---DyDLC~~C~~~~-~n~H~f~rI~~P 425 (575)
.-|+|..|. ..-+|..||... |..|.+..+...
T Consensus 12 ~~y~C~tC~~~~~~~iC~~CF~~~~H~gH~~~~~~~~ 48 (71)
T PF02207_consen 12 IFYRCLTCSLDESSGICEECFANSCHEGHRVVYYRSS 48 (71)
T ss_dssp EEEEETTTBSSTT-BBEHHHHCTSGGGGSSEEEEE--
T ss_pred EEEECccCCCCCCEEEchhhCCCCCcCCCcEEEEEeC
Confidence 447888885 377899998875 668998877655
No 63
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=48.92 E-value=44 Score=28.97 Aligned_cols=56 Identities=27% Similarity=0.441 Sum_probs=41.4
Q ss_pred EEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 7 iKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
+||+=.+..+|+-|-.+ ++..|+.|.+..|+++.. .+. =|.+||| |..|++|....
T Consensus 3 ~kV~~~~r~~k~GV~A~-------sL~eL~~K~~~~l~l~~~-~~~-l~L~eDG---T~VddEeyF~t 58 (74)
T smart00266 3 FKVRDHDRNVRKGVAAS-------SLEELLSKVCDKLALPDS-PVT-LVLEEDG---TIVDDEEYFQT 58 (74)
T ss_pred EEEecCCCCeeEEEEcC-------CHHHHHHHHHHHhCCCCC-CcE-EEEecCC---cEEccHHHHhc
Confidence 57777777888888754 466699999999999853 333 4788899 55677777643
No 64
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.11 E-value=12 Score=44.27 Aligned_cols=73 Identities=30% Similarity=0.442 Sum_probs=51.7
Q ss_pred EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh--c-CceE
Q 008160 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ--R-LKFL 82 (575)
Q Consensus 6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q--~-l~~L 82 (575)
.+|.-||+++|+=.++++ -++.-||.-|.. +++-..+-|+|.|-+||.|||.+...|.-++.+ + ++.+
T Consensus 291 ~~~~v~~~~i~laql~~~------~~~~~lR~ii~~---~~~~~~v~ik~~~~~~~~vtit~~a~l~l~~sa~i~l~~~~ 361 (748)
T KOG4151|consen 291 TLKLVYGDDIRLAQLPLN------CTVKILREIIHS---FPSLRAVLIKYRDTEGDLVTITTTAELRLAESAVIKLGKTL 361 (748)
T ss_pred hhhhhhccHHHHHhcchh------hchHHHHHHHhc---ccchhhheeeeccCCcceeeeeehhhhhhhhHHHHHHHHHh
Confidence 467888999998888753 234345555554 777778999999999999999999988765222 1 2345
Q ss_pred EEEEE
Q 008160 83 RIDVH 87 (575)
Q Consensus 83 ritV~ 87 (575)
|.++.
T Consensus 362 r~~~v 366 (748)
T KOG4151|consen 362 RFYVV 366 (748)
T ss_pred hhhee
Confidence 66653
No 65
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=45.36 E-value=49 Score=29.53 Aligned_cols=35 Identities=17% Similarity=0.467 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEEEeeCCC--CCCeEeeEEEeECCCCC
Q 008160 502 GVPVEGEIDIAVDFTAPE--LPGRYISYWRMSSPSGV 536 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~--~pG~Y~SyWRL~tp~G~ 536 (575)
++.+|+....+.++..|. -+|.|.-.|+|.+.+|.
T Consensus 87 Pi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~~ 123 (134)
T PF02221_consen 87 PIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDGE 123 (134)
T ss_dssp TBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTTE
T ss_pred ccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCCC
Confidence 389999877777766664 46999999999997654
No 66
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=44.68 E-value=76 Score=25.25 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=40.8
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
+.||...|.. +.+.+.. +.....|..+|++.++++++ ...|.|. |. .|.|+.-|.+.-.+....|.+
T Consensus 3 i~vk~~~g~~---~~~~v~~----~~tv~~lK~~i~~~~gi~~~-~q~L~~~---g~--~L~d~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 3 IKVKTLDSQT---HTFTVEE----EITVLDLKEKIAEEVGIPVE-QQRLIYS---GR--VLKDDETLSEYKVEDGHTIHL 69 (72)
T ss_pred EEEEeCCCCE---EEEEECC----CCcHHHHHHHHHHHHCcCHH-HeEEEEC---CE--ECCCcCcHHHCCCCCCCEEEE
Confidence 4555554433 3444432 34678899999999999865 6788884 54 456666666543333343433
No 67
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=44.64 E-value=59 Score=28.46 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=37.6
Q ss_pred EEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEE
Q 008160 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT 64 (575)
Q Consensus 7 iKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vt 64 (575)
+||+=-+..+|+-|-.+ ++..|+.|.++.|+|+.. . .-=|.+|||=.|+
T Consensus 5 ~kV~~~~rs~k~GV~A~-------sL~eL~~K~~~~l~l~~~-~-~~l~L~eDGTeVt 53 (77)
T cd06535 5 VKIRSLNSAQKYGVAAK-------NLKELLRKGCRLLQLPCA-G-SRLCLYEDGTEVT 53 (77)
T ss_pred eEEecCCCCeeEeEEcC-------CHHHHHHHHHHHhCCCCC-C-cEEEEecCCcEeh
Confidence 67777777888888754 466699999999999853 3 3357799998883
No 68
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=44.29 E-value=52 Score=28.86 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=40.6
Q ss_pred EEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 7 iKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
+||+=.+..+|+-|-.+ ++..|+.|.++.|+|+. ..-=|.+||| |..|++|....
T Consensus 5 ~kV~~~~rs~k~GV~A~-------sL~eL~~K~~~~l~l~~---~~~lvL~eDG---T~Vd~EeyF~t 59 (79)
T cd06538 5 FRVSNADRSLRKGIMAD-------SLEDLLNKVLDALLLDC---ISSLVLDEDG---TGVDTEEFFQA 59 (79)
T ss_pred EEEecCCCceeEeEEcC-------CHHHHHHHHHHHcCCCC---ccEEEEecCC---cEEccHHHHhh
Confidence 57777777778887743 46669999999999942 2335888999 55677777754
No 69
>PRK10301 hypothetical protein; Provisional
Probab=43.84 E-value=1e+02 Score=28.68 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=26.2
Q ss_pred CEEEEEEEeeCCCCCCeEeeEEEeECCCCCCC
Q 008160 507 GEIDIAVDFTAPELPGRYISYWRMSSPSGVKF 538 (575)
Q Consensus 507 EevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~F 538 (575)
+.-.++|.+..|-.+|.|.=.||..+.||..-
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~~ 115 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVSVDGHKT 115 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEecCCCcc
Confidence 34456777777789999999999999999764
No 70
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=43.81 E-value=1.4e+02 Score=24.10 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=38.8
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLC 72 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~ 72 (575)
+.|||+..+- +++.+.++. +-.+..|..+.++..+++++.++.|.|. |.. |+++.-+.
T Consensus 1 I~i~v~~~~~-~~~~~~v~~----~~~~~~l~~~~~~~~~i~~~~~~~l~fd---G~~--L~~~~T~~ 58 (72)
T PF11976_consen 1 ITIKVRSQDG-KEIKFKVKP----TTTVSKLIEKYCEKKGIPPEESIRLIFD---GKR--LDPNDTPE 58 (72)
T ss_dssp EEEEEEETTS-EEEEEEEET----TSCCHHHHHHHHHHHTTTT-TTEEEEET---TEE--E-TTSCHH
T ss_pred CEEEEEeCCC-CEEEEEECC----CCcHHHHHHHHHHhhCCCccceEEEEEC---CEE--cCCCCCHH
Confidence 3567776543 366666653 4457779999999999998789999994 444 44444444
No 71
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=42.47 E-value=47 Score=37.27 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=58.9
Q ss_pred eEEEEEe-CCceeeeeeccCCCCCcccCH-HHHHHHHHH-----Hh----CCCCCCceEEEEecCC-------CCeEEEc
Q 008160 5 MVIKVKY-GDTLRRFNARVDENEKLDLDI-DGLRAKIKS-----LF----NFPHDSDLTLTYVDED-------GDIVTLV 66 (575)
Q Consensus 5 ~viKv~~-gd~lRRf~~~~~~n~~~dl~~-~~L~~ki~~-----~F----~l~~d~~~~l~Y~DeD-------GD~Vtl~ 66 (575)
+.++|.- +|..+-+.+.-..++++-+.| ..|-+.+++ +| ++++..-=+|-.+|+| |.+|||.
T Consensus 45 l~L~V~~rdGe~~~l~Ie~~~dedlG~~f~~~~~d~~~~C~N~C~FCFidQlP~gmR~sLY~KDDDyRLSFL~GnyiTLT 124 (433)
T TIGR03279 45 LELEVLDANGESHQIEIEKDLDEDLGLEFTTALFDGLIQCNNRCPFCFIDQQPPGKRESLYLKDDDYRLSFLYGSYLTLT 124 (433)
T ss_pred EEEEEEcCCCeEEEEEEecCCCCCCcEEeccccCCcccccCCcCceEeccCCCCCCcCcceeccCcchhhhhccceeeec
Confidence 5566642 444445555544445555555 345455555 34 7899888899999988 9999998
Q ss_pred C--chhHHHHHHhcCceEEEEEE
Q 008160 67 D--DDDLCDVMRQRLKFLRIDVH 87 (575)
Q Consensus 67 d--d~DL~~a~~q~l~~LritV~ 87 (575)
. +.|+.+.++|++.+|.|+|+
T Consensus 125 Nl~~~d~~RI~~~~lspl~iSVh 147 (433)
T TIGR03279 125 NLPPAEWQRIEQLRLSPLYVSVH 147 (433)
T ss_pred CCCHHHHHHHHHcCCCCEEEEEe
Confidence 6 55999999999999999994
No 72
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=42.24 E-value=75 Score=28.11 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=41.3
Q ss_pred EEEe-----cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeE---eeEEEe
Q 008160 465 LRDR-----GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRY---ISYWRM 530 (575)
Q Consensus 465 Wrvr-----Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y---~SyWRL 530 (575)
|+-| -.. .+|.-.++-+.+ |+... +..+++|++|.|+.++.+=+-.|+| .--||+
T Consensus 21 w~Kre~Vlet~~-qYP~~i~f~~~~-dk~~~---------l~~~~~Gd~V~Vsf~i~~RE~~gr~fn~i~aWri 83 (84)
T PF11325_consen 21 WKKREFVLETEE-QYPQKICFEFWG-DKIDL---------LDNFQVGDEVKVSFNIEGREWNGRWFNSIRAWRI 83 (84)
T ss_pred cEEEEEEEeCCC-cCCceEEEEEEc-chhhh---------hccCCCCCEEEEEEEeeccEecceEeeEeEEEEe
Confidence 7766 444 689999988877 65432 1358899999999999999888886 455765
No 73
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=41.37 E-value=13 Score=40.08 Aligned_cols=32 Identities=22% Similarity=0.600 Sum_probs=24.9
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchh-hhhcCCC
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSI-CFAAMGS 415 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~-C~~~~~n 415 (575)
..|-.|++++ .||+|-.| |+-+|+. ||.++.+
T Consensus 8 ~~C~ic~vq~---~~YtCPRC-n~~YCsl~CYr~h~~ 40 (383)
T KOG4317|consen 8 LACGICGVQK---REYTCPRC-NLLYCSLKCYRNHKH 40 (383)
T ss_pred eecccccccc---ccccCCCC-CccceeeeeecCCCc
Confidence 5688888765 66999999 6778886 9987643
No 74
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=41.12 E-value=51 Score=31.10 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.8
Q ss_pred CCCCCCCCEEEEEE-EeeCCCCCCeEe
Q 008160 500 ADGVPVEGEIDIAV-DFTAPELPGRYI 525 (575)
Q Consensus 500 v~~v~PGEevdVSV-~L~AP~~pG~Y~ 525 (575)
-++|+||+++.|.+ .+..|...|.|+
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEE
Confidence 45799999999999 788999999984
No 75
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=40.95 E-value=28 Score=28.94 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=19.8
Q ss_pred CCCCCCEEEEEEEeeCCC--CCCeEeeEE
Q 008160 502 GVPVEGEIDIAVDFTAPE--LPGRYISYW 528 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~--~pG~Y~SyW 528 (575)
.|+|||++.+++.++.|. .+|.|.=-.
T Consensus 45 ~l~pG~s~~~~~~V~vp~~a~~G~y~v~~ 73 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVPADAAPGTYTVTV 73 (78)
T ss_dssp -B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred cCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence 699999999999999996 489986433
No 76
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=38.68 E-value=4.8 Score=32.67 Aligned_cols=32 Identities=34% Similarity=0.759 Sum_probs=23.2
Q ss_pred eecCCCCC-CCccc-------ceEEeccC--CCCccchhhhh
Q 008160 380 VRCDGCGV-HPITG-------PRFKSKVK--DDYDLCSICFA 411 (575)
Q Consensus 380 V~CDgC~~-~PI~G-------~RYKCsvC--~DyDLC~~C~~ 411 (575)
+.||-|+. .||.| .||-|+.| +.|-+|-.|-.
T Consensus 8 y~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~deYY~CksC~G 49 (57)
T PF14445_consen 8 YSCDLCNSSHPISELRQCVLCGRWACNSCWQDEYYTCKSCNG 49 (57)
T ss_pred HhHHhhcccCcHHHHHHHhhhchhhhhhhhhhhHhHHHhhhc
Confidence 67888885 35544 47888888 46888888864
No 77
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=36.34 E-value=39 Score=29.54 Aligned_cols=29 Identities=31% Similarity=0.618 Sum_probs=21.9
Q ss_pred EEEEEEeeCCCCCCeEeeEEEeECCCCCC
Q 008160 509 IDIAVDFTAPELPGRYISYWRMSSPSGVK 537 (575)
Q Consensus 509 vdVSV~L~AP~~pG~Y~SyWRL~tp~G~~ 537 (575)
-.+.+.+..+-.+|.|.=.||....||..
T Consensus 59 ~~~~~~l~~~l~~G~YtV~wrvvs~DGH~ 87 (97)
T PF04234_consen 59 KTLTVPLPPPLPPGTYTVSWRVVSADGHP 87 (97)
T ss_dssp TEEEEEESS---SEEEEEEEEEEETTSCE
T ss_pred eEEEEECCCCCCCceEEEEEEEEecCCCC
Confidence 46677777778899999999999999965
No 78
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=36.26 E-value=1.7e+02 Score=23.46 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=43.8
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
++||...|.. +.+.+. .+.....|..+|++.++++++ +..|.|. |. .|.|+..|.+.=.+....|.+
T Consensus 3 i~v~~~~g~~---~~~~v~----~~~tv~~lK~~i~~~~g~~~~-~qrL~~~---g~--~L~d~~tl~~~~i~~g~~i~l 69 (76)
T cd01806 3 IKVKTLTGKE---IEIDIE----PTDKVERIKERVEEKEGIPPQ-QQRLIYS---GK--QMNDDKTAADYKLEGGSVLHL 69 (76)
T ss_pred EEEEeCCCCE---EEEEEC----CCCCHHHHHHHHhHhhCCChh-hEEEEEC---Ce--EccCCCCHHHcCCCCCCEEEE
Confidence 5666655544 444443 245678899999999999976 5777785 43 356777776542333444555
Q ss_pred EEE
Q 008160 85 DVH 87 (575)
Q Consensus 85 tV~ 87 (575)
.+.
T Consensus 70 ~~~ 72 (76)
T cd01806 70 VLA 72 (76)
T ss_pred EEE
Confidence 553
No 79
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=36.06 E-value=95 Score=25.78 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=39.6
Q ss_pred ccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEEEEe
Q 008160 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHL 88 (575)
Q Consensus 29 dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~LritV~l 88 (575)
+.+...|..+|+....+++ +...|.|... .|.|+..|.+.-.+....|.+.+.+
T Consensus 17 ~~TV~~lK~~i~~~~gip~-~~q~L~~~G~-----~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 17 SDPVSVLKVKIHEETGMPA-GKQKLQYEGI-----FIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred CCcHHHHHHHHHHHHCCCH-HHEEEEECCE-----EcCCCCcHHHcCCCCCCEEEEEEec
Confidence 5568889999999999986 4677789753 5778778876545556666666644
No 80
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=35.62 E-value=66 Score=27.20 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=36.3
Q ss_pred EEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCc-hhHHH
Q 008160 8 KVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDD-DDLCD 73 (575)
Q Consensus 8 Kv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd-~DL~~ 73 (575)
|+.+|++.. +.+.. +.+...|..||+..++++++ ...| |.... |.|| .-|.+
T Consensus 8 ~~~~~~t~~-l~v~~------~~TV~~lK~kI~~~~gip~~-~QrL-~~G~~-----L~dD~~tL~~ 60 (75)
T cd01799 8 AQSHTVTIW-LTVRP------DMTVAQLKDKVFLDYGFPPA-VQRW-VIGQR-----LARDQETLYS 60 (75)
T ss_pred cccCCCeEE-EEECC------CCcHHHHHHHHHHHHCcCHH-HEEE-EcCCe-----eCCCcCCHHH
Confidence 677777765 66652 55788899999999999986 5666 76432 5544 44544
No 81
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=35.57 E-value=80 Score=28.73 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCCCCEEEEEEEeeCCC--CCCeEeeEEEeECCCCCCCCCeEEEE
Q 008160 503 VPVEGEIDIAVDFTAPE--LPGRYISYWRMSSPSGVKFGQRVWVL 545 (575)
Q Consensus 503 v~PGEevdVSV~L~AP~--~pG~Y~SyWRL~tp~G~~FG~~lWv~ 545 (575)
+++|+.. ++..+.-|. -+|+|.-.|+|.+.++ +.|.|.
T Consensus 79 i~~G~~~-~~~~~~ip~~~P~g~y~v~~~l~d~~~----~~i~Ci 118 (122)
T cd00917 79 IEPGDKF-LTKLVDLPGEIPPGKYTVSARAYTKDD----EEITCL 118 (122)
T ss_pred cCCCcEE-EEEEeeCCCCCCCceEEEEEEEECCCC----CEEEEE
Confidence 8999988 777777776 5899999999998654 455553
No 82
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=35.42 E-value=82 Score=27.92 Aligned_cols=34 Identities=21% Similarity=0.558 Sum_probs=28.0
Q ss_pred CCCCCEEEEEEEeeCCC--CCCeEeeEEEeECCCCC
Q 008160 503 VPVEGEIDIAVDFTAPE--LPGRYISYWRMSSPSGV 536 (575)
Q Consensus 503 v~PGEevdVSV~L~AP~--~pG~Y~SyWRL~tp~G~ 536 (575)
+.+|+.+.....|.-|. -+|.|.-.|+|.+++|.
T Consensus 74 l~~G~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~~ 109 (118)
T smart00737 74 IEKGETVNYTNSLTVPGIFPPGKYTVKWELTDEDGE 109 (118)
T ss_pred CCCCeeEEEEEeeEccccCCCeEEEEEEEEEcCCCC
Confidence 89999988888776665 46999999999997753
No 83
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=35.40 E-value=19 Score=29.00 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=17.4
Q ss_pred ecCCCCCCCccc--------ceEEeccCCCCccchhhhhc
Q 008160 381 RCDGCGVHPITG--------PRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 381 ~CDgC~~~PI~G--------~RYKCsvC~DyDLC~~C~~~ 412 (575)
.|=+|... +.. .||+|..|... +|..|=.-
T Consensus 1 ~CfgC~~~-~~~~~~~~~~~~~y~C~~C~~~-FC~dCD~f 38 (51)
T PF07975_consen 1 YCFGCQKP-FPDGPEKKADSSRYRCPKCKNH-FCIDCDVF 38 (51)
T ss_dssp EETTTTEE--TTS-------EEE--TTTT---B-HHHHHT
T ss_pred CCccCCCC-CCCcccccccCCeEECCCCCCc-cccCcChh
Confidence 37788863 333 69999999765 99999543
No 84
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=35.29 E-value=78 Score=29.78 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=42.1
Q ss_pred ceEEEe-cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCC
Q 008160 463 HILRDR-GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKF 538 (575)
Q Consensus 463 KtWrvr-Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~F 538 (575)
..|.+. +.- .+..+.|+-... +-| -|.|||....+=--.-....|.-.+++.|.+++|..|
T Consensus 50 R~W~I~d~~g-------~~~~V~G~GVVG------~qP--~L~PGe~F~Y~S~~~l~tp~G~M~G~y~~~~~~G~~F 111 (127)
T PRK05461 50 RHWLITDANG-------RVQEVRGEGVVG------EQP--VLAPGESFEYTSGAVLETPSGTMQGHYQMVDEDGERF 111 (127)
T ss_pred eeEEEEECCC-------CEEEEECCceec------CCc--eECCCCCeEEeCCCCccCCCEEEEEEEEEEeCCCCEE
Confidence 788888 432 134566754322 233 4999998888765555567899999999998888654
No 85
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=32.68 E-value=20 Score=38.84 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=25.9
Q ss_pred ecCCCCCCCcccceEEeccCCCCccchhhhhc
Q 008160 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 381 ~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~ 412 (575)
.|-+|+.....+.||+|..|-++ +|..|-.-
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~ 362 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNV-FCLDCDVF 362 (378)
T ss_pred ceeeeccccCCCCcEEchhccce-eeccchHH
Confidence 39999766788999999999887 89999543
No 86
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=32.52 E-value=41 Score=23.88 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=24.8
Q ss_pred ecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEE
Q 008160 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIR 421 (575)
Q Consensus 381 ~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~r 421 (575)
.|+.|...+ ..|-|..|... +|..|....|..|.+..
T Consensus 2 ~C~~H~~~~---~~~fC~~~~~~-iC~~C~~~~H~~H~~~~ 38 (39)
T cd00021 2 LCDEHGEEP---LSLFCETDRAL-LCVDCDLSVHSGHRRVP 38 (39)
T ss_pred CCCccCCcc---eEEEeCccChh-hhhhcChhhcCCCCEee
Confidence 455555433 35777777554 89999877777787754
No 87
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=32.16 E-value=1.7e+02 Score=24.55 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=47.5
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCc
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~ 80 (575)
|-=.++||..-| |.|.+.+.. +.+..+|..+|++.+++++ ....|+|.. +|- .|.|+.-|.+.=.+...
T Consensus 1 ~~~~i~Vk~~~G---~~~~~~v~~----~~TV~~lK~~I~~~~~i~~-~~qrL~~~~-~G~--~L~D~~tL~~~gi~~gs 69 (80)
T cd01792 1 MGWDLKVKMLGG---NEFLVSLRD----SMTVSELKQQIAQKIGVPA-FQQRLAHLD-SRE--VLQDGVPLVSQGLGPGS 69 (80)
T ss_pred CceEEEEEeCCC---CEEEEEcCC----CCcHHHHHHHHHHHhCCCH-HHEEEEecc-CCC--CCCCCCCHHHcCCCCCC
Confidence 343467777555 447776642 4567889999999999875 577775543 444 35666666654234455
Q ss_pred eEEEEE
Q 008160 81 FLRIDV 86 (575)
Q Consensus 81 ~LritV 86 (575)
.|.+.+
T Consensus 70 ~l~l~~ 75 (80)
T cd01792 70 TVLLVV 75 (80)
T ss_pred EEEEEE
Confidence 565554
No 88
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=32.08 E-value=15 Score=40.87 Aligned_cols=120 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCC-ce-EEEEecCCCCeEEEcCchhHHHHHHhcCceEEEEE
Q 008160 9 VKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDS-DL-TLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (575)
Q Consensus 9 v~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~-~~-~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~LritV 86 (575)
.+||+.+||+.++. .++++.|++-.-+-|.-.+.. +| -|--.|..=++----+|+.|.+ ++....|.|.+
T Consensus 2 Lq~~~~tKk~~~~~------~~t~~~lr~lFv~~F~~~~~~~~~p~IyI~Dp~~~v~yELed~~l~d--ikd~s~l~l~~ 73 (424)
T PF03915_consen 2 LQYGDKTKKCVLPN------PLTINSLRLLFVEKFAYSPGMDDFPEIYIQDPKSGVFYELEDSNLSD--IKDGSVLSLNE 73 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCCeeeeeeCCC------CCCHHHHHHHHHHHccCCCCCCCCCceEeecCCCCceeeeccccccc--ccCCeeEEEec
Confidence 47999999999994 445777888888888544432 23 2333343222211111222443 22234455555
Q ss_pred Ee-cCCccCCccccCCCCCCCCCCCcccCCchhhhhHHHHHHhcCCchhHHHHHhhhhhHh
Q 008160 87 HL-NNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVA 146 (575)
Q Consensus 87 ~l-~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~i~~~i~~~l~~~~ep~~~~~~kls~~~~ 146 (575)
.- +.-.. + .. ..+..+.+.+..||+.|++.-..+-..+.+.....+.+++
T Consensus 74 ~~ldevk~--h----~d----~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (424)
T PF03915_consen 74 EPLDEVKK--H----ID----SGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVA 124 (424)
T ss_dssp -------------------------------------------------------------
T ss_pred ccccchhh--h----hc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 32 11111 0 01 1245566677788888777666664444444444444443
No 89
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=31.61 E-value=52 Score=31.15 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCCC
Q 008160 502 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFG 539 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~FG 539 (575)
.++||++...+=--.-....|.-++.+-|.+.+|..|-
T Consensus 74 ~l~PG~~y~YtSg~~l~Tp~G~M~GhY~M~~e~G~~F~ 111 (126)
T COG2967 74 LLAPGEEYQYTSGCPLDTPSGTMQGHYEMIDEDGETFD 111 (126)
T ss_pred ccCCCCceEEcCCcCccCCcceEEEEEEEecCCCcEEE
Confidence 59999999998765556668999999999999998884
No 90
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=30.35 E-value=2.7e+02 Score=24.55 Aligned_cols=70 Identities=23% Similarity=0.355 Sum_probs=51.8
Q ss_pred EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh-----cCc
Q 008160 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----RLK 80 (575)
Q Consensus 6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q-----~l~ 80 (575)
-||..|.|.-|=+.++ | -+-+.+|.+|+..+|+..= -+-|+.- -=+|-|-+.+||-+|+.. ..+
T Consensus 2 RiKfE~~gEKRIi~f~-R-----Pvkf~dl~~kv~~afGq~m----dl~ytn~-eL~iPl~~Q~DLDkAie~ld~s~~~k 70 (79)
T cd06405 2 RIKFEHNGEKRIIQFP-R-----PVKFKDLQQKVTTAFGQPM----DLHYTNN-ELLIPLKNQEDLDRAIELLDRSPHMK 70 (79)
T ss_pred eEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCCee----eEEEecc-cEEEeccCHHHHHHHHHHHccCcccc
Confidence 4899999998888887 2 4557779999999998763 3556553 367888899999988422 246
Q ss_pred eEEEEE
Q 008160 81 FLRIDV 86 (575)
Q Consensus 81 ~LritV 86 (575)
.|||-+
T Consensus 71 sLRilL 76 (79)
T cd06405 71 SLRILL 76 (79)
T ss_pred ceeEeE
Confidence 677765
No 91
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=29.30 E-value=99 Score=29.75 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=29.5
Q ss_pred cceEEEEEeCCc----eeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCC
Q 008160 3 STMVIKVKYGDT----LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHD 48 (575)
Q Consensus 3 ~~~viKv~~gd~----lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d 48 (575)
..+.|||++.+. -||+.|+. ++++.+|-..||.+|....+
T Consensus 3 ~~y~lkV~L~~~~p~iwRri~Vp~------~~tl~~Lh~~Iq~afgw~~~ 46 (179)
T PF07929_consen 3 KVYQLKVSLKGSKPPIWRRIEVPA------DITLADLHEVIQAAFGWDDD 46 (179)
T ss_dssp EEEEEEEEETT-SS-EEEEEEEET------T-BHHHHHHHHHHHTT----
T ss_pred eEEEEEEEEcCCCCCeEEEEEECC------CCCHHHHHHHHHHHhCcCCC
Confidence 357899999764 89999994 66788899999999977633
No 92
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=28.68 E-value=1.1e+02 Score=29.11 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=30.5
Q ss_pred CCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCCCC
Q 008160 504 PVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQ 540 (575)
Q Consensus 504 ~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~FG~ 540 (575)
..++...+.|.+..|-++|.|+--||..+.||..-+-
T Consensus 82 ~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~G 118 (127)
T COG2372 82 DEQNHTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVKG 118 (127)
T ss_pred cccCCcEEEecCcccCCCCcEEEEEEEEecCCcEecc
Confidence 3344467889999999999999999999999977544
No 93
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=28.10 E-value=1e+02 Score=28.46 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.3
Q ss_pred CCCCCCEEEEEEEeeCCCC--CCeEeeEEEeE
Q 008160 502 GVPVEGEIDIAVDFTAPEL--PGRYISYWRMS 531 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~~--pG~Y~SyWRL~ 531 (575)
.|+|+|+.+|++.++.|.+ .|.+.+=|++.
T Consensus 88 tl~~~~sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 88 TLPPNESKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EECCCCEEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 4899999999999999987 89888877764
No 94
>PTZ00044 ubiquitin; Provisional
Probab=27.40 E-value=1.4e+02 Score=24.38 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=44.4
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
+.||---|. .+.+.+++ +.+...|..+|++..+++++ +..|-|. |.. |.|+..|.+.-.+....|.+
T Consensus 3 i~vk~~~G~---~~~l~v~~----~~tv~~lK~~i~~~~gi~~~-~q~L~~~---g~~--L~d~~~l~~~~i~~~~~i~l 69 (76)
T PTZ00044 3 ILIKTLTGK---KQSFNFEP----DNTVQQVKMALQEKEGIDVK-QIRLIYS---GKQ--MSDDLKLSDYKVVPGSTIHM 69 (76)
T ss_pred EEEEeCCCC---EEEEEECC----CCcHHHHHHHHHHHHCCCHH-HeEEEEC---CEE--ccCCCcHHHcCCCCCCEEEE
Confidence 445544343 34445432 45678899999999999874 5666685 333 66777776543444555666
Q ss_pred EEEe
Q 008160 85 DVHL 88 (575)
Q Consensus 85 tV~l 88 (575)
.+.+
T Consensus 70 ~~~~ 73 (76)
T PTZ00044 70 VLQL 73 (76)
T ss_pred EEEc
Confidence 6644
No 95
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.11 E-value=1.3e+02 Score=26.70 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=39.1
Q ss_pred EEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH
Q 008160 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (575)
Q Consensus 7 iKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~ 75 (575)
+||+=-+...|+-|-.. ++..|+.|.+..|+++.. +.| -.+||| |..|++|....+
T Consensus 5 fkv~~~~r~~kkGV~A~-------sL~EL~~K~~~~L~~~~~--~~l-vLeeDG---T~Vd~EeyF~tL 60 (81)
T cd06537 5 FRVCDHKRTVRKGLTAA-------SLQELLAKALETLLLSGV--LTL-VLEEDG---TAVDSEDFFELL 60 (81)
T ss_pred eEEecCCCCeeEeEEcc-------CHHHHHHHHHHHhCCCCc--eEE-EEecCC---CEEccHHHHhhC
Confidence 57776666677777643 467799999999999632 333 357788 566777777543
No 96
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=27.05 E-value=50 Score=32.05 Aligned_cols=57 Identities=32% Similarity=0.341 Sum_probs=35.0
Q ss_pred CcceEEEEEeCCceeeeeeccCCCCCcccCH---------HHHHHHHHHHhCCCCCCceEE--EEecCCCCeEEE
Q 008160 2 ESTMVIKVKYGDTLRRFNARVDENEKLDLDI---------DGLRAKIKSLFNFPHDSDLTL--TYVDEDGDIVTL 65 (575)
Q Consensus 2 ~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~---------~~L~~ki~~~F~l~~d~~~~l--~Y~DeDGD~Vtl 65 (575)
++++||.|+||+- .+| +|..||=. .-|+.+.|.+=..-|--..++ |-.|++|+.+|-
T Consensus 70 ~Gk~VIeV~y~gi----~ih---sethDLCdetsCPVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~LTC 137 (153)
T KOG4680|consen 70 EGKYVIEVSYGGI----RIH---SETHDLCDETSCPVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKELTC 137 (153)
T ss_pred CCeEEEEEEEeeE----EEe---eccccccccccCCcCcCceeeeeeEeccCcCCCceEEEEEEeecCCCCEEEE
Confidence 5789999999984 334 33344311 115666766664333344444 778899988874
No 97
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=26.80 E-value=1.6e+02 Score=28.04 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=41.5
Q ss_pred EEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEE-EEecCCCCeEEEcCchhHHHH
Q 008160 8 KVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTL-TYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 8 Kv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l-~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
+|+-+..-+=|+++ +.++.++...+++|-+.+.=+-=--|.+ || |+|+|-+. .+||..|
T Consensus 56 ~V~~~~GW~~lk~~----gpf~FgltGilasV~~pLsd~gigIFavSty---dtDhiLVr-~~dLekA 115 (128)
T COG3603 56 VVQIEKGWSCLKFE----GPFDFGLTGILASVSQPLSDNGIGIFAVSTY---DTDHILVR-EEDLEKA 115 (128)
T ss_pred ceEecCCeEEEEEe----ccccCCcchhhhhhhhhHhhCCccEEEEEec---cCceEEEe-hhhHHHH
Confidence 45556666677777 4789999999999999884332225666 77 79999665 5667755
No 98
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=25.62 E-value=1.1e+02 Score=27.09 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=24.8
Q ss_pred CCCCCEEEEEEEeeCCC----CCCe-EeeEEEeECCCCC
Q 008160 503 VPVEGEIDIAVDFTAPE----LPGR-YISYWRMSSPSGV 536 (575)
Q Consensus 503 v~PGEevdVSV~L~AP~----~pG~-Y~SyWRL~tp~G~ 536 (575)
|+||++.+|.|.|..|. .-|. |.+|=+|...+|.
T Consensus 66 V~ag~s~~v~vti~~p~~~~~~~~~~~eG~I~~~~~~~~ 104 (112)
T PF06280_consen 66 VPAGQSKTVTVTITPPSGLDASNGPFYEGFITFKSSDGE 104 (112)
T ss_dssp E-TTEEEEEEEEEE--GGGHHTT-EEEEEEEEEESSTTS
T ss_pred ECCCCEEEEEEEEEehhcCCcccCCEEEEEEEEEcCCCC
Confidence 89999999999999987 3344 7888888887765
No 99
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=24.92 E-value=1.3e+02 Score=25.90 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=41.1
Q ss_pred eeeeeeccCCCCCcccCHHHHHHHHHHHh-CCCCCC-ceEE-EEecCCCCeEEEcCchhHHHHHHhcCceEEEEE
Q 008160 15 LRRFNARVDENEKLDLDIDGLRAKIKSLF-NFPHDS-DLTL-TYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (575)
Q Consensus 15 lRRf~~~~~~n~~~dl~~~~L~~ki~~~F-~l~~d~-~~~l-~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~LritV 86 (575)
.|||-.-..+ +-++..|...|.+-| +|.|+. ++.| +..|++|. -|+.|--..++..+ .+.||+-|
T Consensus 2 ~kKFLhlt~~----~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~c--DLD~d~~V~DVf~~-~~~vrvi~ 69 (73)
T PF10407_consen 2 YKKFLHLTDP----NNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGC--DLDPDFLVKDVFNS-NNVVRVIL 69 (73)
T ss_pred ccEEEEEeCC----CCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCC--CCCcccEeeeeecc-CCEEEEEe
Confidence 4778666543 445666999999999 777776 7777 99999883 23333222333343 35566654
No 100
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=24.82 E-value=62 Score=27.27 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=21.4
Q ss_pred EEeccCC---CCccchhhhh-cCCCcccEEEEe
Q 008160 395 FKSKVKD---DYDLCSICFA-AMGSEADYIRID 423 (575)
Q Consensus 395 YKCsvC~---DyDLC~~C~~-~~~n~H~f~rI~ 423 (575)
|+|..|. ..-+|..||. ..|..|.+..+.
T Consensus 14 y~C~tC~~~~~~~iC~~Cf~~~~H~gH~~~~~~ 46 (71)
T smart00396 14 YRCKTCGLDPTCVLCSDCFRSNCHKGHDYSLKT 46 (71)
T ss_pred EECcCCCCCCCEeEChHHCCCCCCCCCCEEEEE
Confidence 8888885 2448999999 557788876554
No 101
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=24.82 E-value=1.9e+02 Score=24.16 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=41.1
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
+.|.|+|++.. |.+.++ .+-...+|..+|++..+++++ ..-|-|.---|- .+.|+..|.+.
T Consensus 1 ~~i~vk~~g~~--~~v~v~----~~~Tv~~lK~~i~~~tgvp~~-~QKLi~~~~~Gk--~l~D~~~L~~~ 61 (74)
T cd01813 1 VPVIVKWGGQE--YSVTTL----SEDTVLDLKQFIKTLTGVLPE-RQKLLGLKVKGK--PAEDDVKISAL 61 (74)
T ss_pred CEEEEEECCEE--EEEEEC----CCCCHHHHHHHHHHHHCCCHH-HEEEEeecccCC--cCCCCcCHHHc
Confidence 35778888865 566664 255688899999999999976 444444100143 47788888764
No 102
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=24.13 E-value=50 Score=25.35 Aligned_cols=26 Identities=23% Similarity=0.590 Sum_probs=19.9
Q ss_pred ccCceecCCCCCC---Cccc-ceEEeccCC
Q 008160 376 FHKGVRCDGCGVH---PITG-PRFKSKVKD 401 (575)
Q Consensus 376 vH~GV~CDgC~~~---PI~G-~RYKCsvC~ 401 (575)
+-.|+.|-.|+.. .|.+ .+|+|..|-
T Consensus 15 W~~g~~CP~Cg~~~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 15 WPDGFVCPHCGSTKHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCCCCCCCeeeEEeCCCCeEECCCCC
Confidence 4567889999963 4666 899999984
No 103
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=23.79 E-value=69 Score=24.56 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=18.2
Q ss_pred ccCceecCCCCCCCc---ccceEEeccCC
Q 008160 376 FHKGVRCDGCGVHPI---TGPRFKSKVKD 401 (575)
Q Consensus 376 vH~GV~CDgC~~~PI---~G~RYKCsvC~ 401 (575)
+.....|+.|+. .| ...-|+|..|.
T Consensus 8 ~~~~~~C~~C~~-~i~g~~~~g~~C~~C~ 35 (53)
T PF00130_consen 8 FSKPTYCDVCGK-FIWGLGKQGYRCSWCG 35 (53)
T ss_dssp SSSTEB-TTSSS-BECSSSSCEEEETTTT
T ss_pred CCCCCCCcccCc-ccCCCCCCeEEECCCC
Confidence 355689999996 57 56788898884
No 104
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=23.77 E-value=2.2e+02 Score=23.37 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=45.1
Q ss_pred eeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEEEEec
Q 008160 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLN 89 (575)
Q Consensus 16 RRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~LritV~l~ 89 (575)
+.+.+.+.+ +....+|..+|++.+++++ ++..|-|. |- .|.|+.-|.+.-.+....|.+.+.+.
T Consensus 9 ~~~~l~v~~----~~tV~~lK~~i~~~~gip~-~~q~Li~~---Gk--~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01793 9 NTHTLEVTG----QETVSDIKAHVAGLEGIDV-EDQVLLLA---GV--PLEDDATLGQCGVEELCTLEVAGRLL 72 (74)
T ss_pred CEEEEEECC----cCcHHHHHHHHHhhhCCCH-HHEEEEEC---Ce--ECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 567777753 4567789999999999986 46677784 43 37777777765455566677777554
No 105
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=23.51 E-value=46 Score=37.77 Aligned_cols=39 Identities=23% Similarity=0.529 Sum_probs=31.8
Q ss_pred CcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcCC
Q 008160 374 GMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG 414 (575)
Q Consensus 374 ~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~ 414 (575)
...| ...|+-|+.. -.-.||+-..-..|++|..||.+++
T Consensus 220 ~~~~-~~~C~~cG~~-~~~t~y~nlra~~~n~C~~C~~qg~ 258 (531)
T COG5259 220 SEKH-PSSCSCCGNK-SFNTRYHNLRAEKYNSCSECYDQGR 258 (531)
T ss_pred cccC-CceeeccCcc-ccchhhhhhhhhhcccchHHHhcCc
Confidence 4445 4889999975 5667899999999999999999874
No 106
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.13 E-value=35 Score=41.06 Aligned_cols=37 Identities=14% Similarity=0.393 Sum_probs=29.0
Q ss_pred cccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC
Q 008160 375 MFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM 413 (575)
Q Consensus 375 ~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~ 413 (575)
+.-..-+||.|.. .+.-+.|.|..|. |-+|-.|+...
T Consensus 225 ~~g~~~mC~~C~~-tlfn~hw~C~~C~-~~~Cl~C~r~~ 261 (889)
T KOG1356|consen 225 VKGIREMCDRCET-TLFNIHWRCPRCG-FGVCLDCYRKW 261 (889)
T ss_pred ccCcchhhhhhcc-cccceeEEccccC-Ceeeecchhhc
Confidence 3444578999996 4777899999994 66999999763
No 107
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=23.08 E-value=2.2e+02 Score=23.90 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=38.7
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
++||...| |+|.+.++. +-...+|..+|++.+++++ +...|.|. |- .|.|+ -|.+.
T Consensus 4 I~Vk~~~G---~~~~l~v~~----~~TV~~LK~~I~~~~~~~~-~~qrL~~~---Gk--~L~d~-~L~~~ 59 (78)
T cd01804 4 LNIHSTTG---TRFDLSVPP----DETVEGLKKRISQRLKVPK-ERLALLHR---ET--RLSSG-KLQDL 59 (78)
T ss_pred EEEEECCC---CEEEEEECC----cCHHHHHHHHHHHHhCCCh-HHEEEEEC---Cc--CCCCC-cHHHc
Confidence 55665555 458888753 4467789999999999986 57788887 43 35565 56543
No 108
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=22.62 E-value=43 Score=24.95 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=17.8
Q ss_pred cCceecCCCCCCCccc---ceEEeccC
Q 008160 377 HKGVRCDGCGVHPITG---PRFKSKVK 400 (575)
Q Consensus 377 H~GV~CDgC~~~PI~G---~RYKCsvC 400 (575)
+....|+.|+. .|.| ..|+|..|
T Consensus 9 ~~~~~C~~C~~-~i~~~~~~~~~C~~C 34 (50)
T cd00029 9 FKPTFCDVCRK-SIWGLFKQGLRCSWC 34 (50)
T ss_pred CCCCChhhcch-hhhccccceeEcCCC
Confidence 45677999995 5887 77888887
No 109
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.60 E-value=36 Score=40.85 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=23.1
Q ss_pred cCCCcccCceecCCCCCC--C-----cccceEEeccCC
Q 008160 371 ALMGMFHKGVRCDGCGVH--P-----ITGPRFKSKVKD 401 (575)
Q Consensus 371 a~~~~vH~GV~CDgC~~~--P-----I~G~RYKCsvC~ 401 (575)
.....-|.-|.|..|+.. | =.|.||||..|.
T Consensus 210 ~p~~~~~~IvRCr~CRtYiNPFV~fid~gr~WrCNlC~ 247 (887)
T KOG1985|consen 210 LPVITSTLIVRCRRCRTYINPFVEFIDQGRRWRCNLCG 247 (887)
T ss_pred CCcccCCceeeehhhhhhcCCeEEecCCCceeeechhh
Confidence 334555667899999973 2 258999999995
No 110
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=22.47 E-value=1.8e+02 Score=24.09 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=39.7
Q ss_pred EEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 8 KVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 8 Kv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
|||.-+. |.|.+.+++ +....+|..+|++.++++++ +..|-|.-. .|.|+.-|.+.
T Consensus 2 ~vk~~~G-~~~~l~v~~----~~TV~~lK~~I~~~~gi~~~-~q~Li~~G~-----~L~D~~~l~~~ 57 (70)
T cd01794 2 KVRLSTG-KDVKLSVSS----KDTVGQLKKQLQAAEGVDPC-CQRWFFSGK-----LLTDKTRLQET 57 (70)
T ss_pred eEEcCCC-CEEEEEECC----cChHHHHHHHHHHHhCCCHH-HeEEEECCe-----ECCCCCCHHHc
Confidence 5655533 667788764 44678899999999999874 566668533 47788777763
No 111
>smart00336 BBOX B-Box-type zinc finger.
Probab=21.83 E-value=86 Score=22.52 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=23.5
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEE
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYI 420 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~ 420 (575)
..|..|...+ ..|-|..|... +|..|....|..|...
T Consensus 4 ~~C~~h~~~~---~~~~C~~c~~~-iC~~C~~~~H~~H~~~ 40 (42)
T smart00336 4 PKCDSHGDEP---AEFFCEECGAL-LCRTCDEAEHRGHTVV 40 (42)
T ss_pred CcCCCCCCCc---eEEECCCCCcc-cccccChhhcCCCcee
Confidence 4566665322 34667777654 8999987756677654
No 112
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=21.63 E-value=2.1e+02 Score=25.86 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEEEeeCCC--CC-CeEeeEEEeECCCCC
Q 008160 502 GVPVEGEIDIAVDFTAPE--LP-GRYISYWRMSSPSGV 536 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~--~p-G~Y~SyWRL~tp~G~ 536 (575)
++++||.+.++..+.-|. .| +.|.--|+|.+.+|.
T Consensus 81 Pl~~G~~~~~~~~~~v~~~~~P~~~~~v~~~l~~~~~~ 118 (127)
T cd00912 81 PLRKGQQYSYAKTVNVPEFTIPTIEYQVVLEDVTDKGE 118 (127)
T ss_pred CcCCCCEEEEEEEEecCcccCCCeeEEEEEEEEcCCCC
Confidence 389999999999888773 45 679999999986543
No 113
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=21.60 E-value=2.4e+02 Score=23.17 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=40.6
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchh-HHHHHHhcCceE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDD-LCDVMRQRLKFL 82 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~D-L~~a~~q~l~~L 82 (575)
++||.--++. .+.+.+.+ +.+...|..+|++.+.+++ ++..|.|.. - .|.|+.. |.+.-.+....|
T Consensus 1 l~v~~~~~g~--~~~l~v~~----~~TV~~lK~~I~~~~gip~-~~q~Li~~G---k--~L~D~~~~L~~~gi~~~~~l 67 (71)
T cd01796 1 ITVYTARSET--TFSLDVDP----DLELENFKALCEAESGIPA-SQQQLIYNG---R--ELVDNKRLLALYGVKDGDLV 67 (71)
T ss_pred CEEEECCCCC--EEEEEECC----cCCHHHHHHHHHHHhCCCH-HHeEEEECC---e--EccCCcccHHHcCCCCCCEE
Confidence 3566652333 36677653 6778899999999999986 456777753 3 4566544 444323333333
No 114
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=21.53 E-value=5e+02 Score=24.42 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=56.0
Q ss_pred eEEEEEeCCc-eeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCe-EEEcCchhHHHHHHh--cCc
Q 008160 5 MVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDI-VTLVDDDDLCDVMRQ--RLK 80 (575)
Q Consensus 5 ~viKv~~gd~-lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~-Vtl~dd~DL~~a~~q--~l~ 80 (575)
+.|+|.+-|. .+.|.+.- .....++...|.+-++|.....|.|.|.|.++.. .-++.+..|.+.... ..+
T Consensus 4 ~~~~V~l~dg~~~~~~~~~------~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 77 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDS------STTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLT 77 (207)
T ss_pred EEEEEEecCCCEEEEEECC------CCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcE
Confidence 5677776554 66777663 4457789999999999998899999999988766 567667777765322 112
Q ss_pred -eEEEEEEecC
Q 008160 81 -FLRIDVHLNN 90 (575)
Q Consensus 81 -~LritV~l~~ 90 (575)
.+|+.+++..
T Consensus 78 l~fr~r~~~~~ 88 (207)
T smart00295 78 LYFRVKFYPPD 88 (207)
T ss_pred EEEEEEEccCC
Confidence 1555555443
No 115
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.48 E-value=26 Score=37.35 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=14.1
Q ss_pred ccceE-EeccCC-CCcc----chhhhhcC
Q 008160 391 TGPRF-KSKVKD-DYDL----CSICFAAM 413 (575)
Q Consensus 391 ~G~RY-KCsvC~-DyDL----C~~C~~~~ 413 (575)
.|.|| +|+.|. ++.+ |.+|....
T Consensus 207 ~GlRYL~CslC~teW~~VR~KC~nC~~t~ 235 (308)
T COG3058 207 QGLRYLHCSLCETEWHYVRVKCSNCEQSK 235 (308)
T ss_pred ccchhhhhhhHHHHHHHHHHHhccccccC
Confidence 45676 677774 4544 77776543
No 116
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=21.34 E-value=4.3e+02 Score=21.41 Aligned_cols=61 Identities=28% Similarity=0.380 Sum_probs=39.9
Q ss_pred eeeeeccCCCCCcccCHHHHHHHHHHHhCC--CCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEEE
Q 008160 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNF--PHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (575)
Q Consensus 16 RRf~~~~~~n~~~dl~~~~L~~ki~~~F~l--~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~LritV 86 (575)
+.|.+.+.. +.+...|..+|++.+++ ++ .+..|.|. |- .|.|+.-|.+.=.+....|-+.|
T Consensus 11 ~~~~l~v~~----~~TV~~lK~~i~~~~~i~~~~-~~q~L~~~---G~--~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 11 QTFPIEVDP----DDTVAELKEKIEEEKGCDYPP-EQQKLIYS---GK--ILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CEEEEEECC----CCcHHHHHHHHHHhhCCCCCh-hHeEEEEC---CE--EccCCCCHHHcCCCCCCEEEEEE
Confidence 567777753 45688899999999998 64 57778885 44 45666666654233344444444
No 117
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=20.93 E-value=3.3e+02 Score=23.98 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=38.0
Q ss_pred EEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 7 iKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
+||+=-+...|+-|-.. ++..|+.|.+..|+++.. .+.| -.+||| |..|++|....
T Consensus 5 fkV~~~~r~~k~GV~A~-------sL~EL~~K~~~~l~~~~~-~~~l-vL~eDG---T~Vd~EeyF~~ 60 (78)
T cd06539 5 FRVSNHDRSSRRGVMAS-------SLQELISKTLDALVITSG-LVTL-VLEEDG---TVVDTEEFFQT 60 (78)
T ss_pred EEEecCCCCceEEEEec-------CHHHHHHHHHHHhCCCCC-CcEE-EEeCCC---CEEccHHHHhh
Confidence 56665666566666643 477799999999999753 3333 346788 55677777654
No 118
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=20.70 E-value=5.4e+02 Score=21.99 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=47.7
Q ss_pred ceEEEEEeC-CceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 4 TMVIKVKYG-DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 4 ~~viKv~~g-d~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
++.|||+.- +...+|++.. +-.+..|..++++...+++ +.+.|.| ||.- |.++.=+.+.=.+....+
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~------~~~l~~l~~~y~~~~gi~~-~~~rf~f---~G~~--L~~~~T~~~l~m~d~d~I 78 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKR------STPLKKLMEAYCQRQGLSM-NSVRFLF---DGQR--IRDNQTPDDLGMEDGDEI 78 (87)
T ss_pred eEEEEEECCCCCEEEEEEcC------CCHHHHHHHHHHHHhCCCc-cceEEEE---CCeE--CCCCCCHHHcCCCCCCEE
Confidence 478899877 4566777764 3457789999999999997 5888888 4654 445544444324444545
Q ss_pred EEEEE
Q 008160 83 RIDVH 87 (575)
Q Consensus 83 ritV~ 87 (575)
.+.+.
T Consensus 79 ~v~l~ 83 (87)
T cd01763 79 EVMLE 83 (87)
T ss_pred EEEEe
Confidence 55443
No 119
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=20.50 E-value=2.8e+02 Score=24.85 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=38.5
Q ss_pred ccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEEEEec
Q 008160 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLN 89 (575)
Q Consensus 29 dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~LritV~l~ 89 (575)
+.+...|..+|++..++++ ++..|.|.-. .|.|+.-|.+.-.+....|.+.+.+.
T Consensus 47 ~~TV~~lK~kI~~~~gip~-~~QrLi~~Gk-----~L~D~~tL~dy~I~~~stL~l~~~l~ 101 (103)
T cd01802 47 FETVISVKAKIQRLEGIPV-AQQHLIWNNM-----ELEDEYCLNDYNISEGCTLKLVLAMR 101 (103)
T ss_pred CCcHHHHHHHHHHHhCCCh-HHEEEEECCE-----ECCCCCcHHHcCCCCCCEEEEEEecC
Confidence 4568889999999999986 4677778532 37777777654345556677776543
Done!