Query 008160
Match_columns 575
No_of_seqs 254 out of 835
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 19:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 99.6 4E-15 1.4E-19 127.3 9.9 82 3-89 5-86 (86)
2 1vd2_A Protein kinase C, IOTA 99.6 1.4E-14 4.7E-19 124.7 10.6 80 3-88 5-88 (89)
3 2kkc_A Sequestosome-1; P62, PB 99.5 2.2E-14 7.5E-19 126.3 11.2 84 4-88 5-101 (102)
4 2ktr_A Sequestosome-1; autopha 99.5 6.1E-14 2.1E-18 126.1 11.3 86 1-88 18-116 (117)
5 2dip_A Zinc finger SWIM domain 99.5 2E-14 6.7E-19 125.6 4.5 54 373-426 25-79 (98)
6 2fc7_A ZZZ3 protein; structure 99.5 6.6E-14 2.3E-18 118.6 6.7 57 370-426 12-77 (82)
7 2e5r_A Dystrobrevin alpha; ZZ 99.5 5.1E-14 1.7E-18 113.9 5.4 54 370-424 3-62 (63)
8 2bkf_A Zinc-finger protein NBR 99.3 7E-12 2.4E-16 107.3 11.6 81 1-88 3-86 (87)
9 1wj6_A KIAA0049 protein, RSGI 99.3 9.5E-12 3.2E-16 108.9 8.7 80 1-87 11-93 (101)
10 1tot_A CREB-binding protein; z 99.3 2E-12 6.9E-17 101.0 3.8 49 376-426 3-51 (52)
11 1q1o_A Cell division control p 99.1 3.1E-10 1.1E-14 99.2 9.2 77 4-86 5-97 (98)
12 1pqs_A Cell division control p 98.6 4.6E-08 1.6E-12 82.1 6.1 46 29-74 11-60 (77)
13 1oey_J P40-PHOX, neutrophil cy 98.3 8.1E-07 2.8E-11 78.2 7.0 59 5-77 19-77 (107)
14 1oey_A P67-PHOX, neutrophil cy 97.9 3E-05 1E-09 66.0 8.7 75 5-89 6-81 (83)
15 1ip9_A BEM1 protein; ubiquitin 96.9 0.0033 1.1E-07 53.7 8.0 68 3-80 11-79 (85)
16 2npt_A Dual specificity mitoge 94.4 0.1 3.4E-06 45.6 7.2 43 28-73 35-78 (106)
17 2cu1_A Mitogen-activated prote 89.8 3.7 0.00013 36.2 11.2 73 4-87 8-85 (103)
18 1v5n_A PDI-like hypothetical p 86.7 0.32 1.1E-05 41.3 2.4 31 380-412 48-78 (89)
19 2jrh_A Mitogen-activated prote 83.9 19 0.00064 31.2 12.0 80 1-91 1-85 (94)
20 1t0y_A Tubulin folding cofacto 82.6 2.7 9.1E-05 37.0 6.6 75 1-80 3-79 (122)
21 1wjn_A Tubulin-folding protein 76.8 6.6 0.00022 32.8 7.0 41 29-70 32-74 (97)
22 1wx7_A Ubiquilin 3; ubiquitin- 75.8 16 0.00054 30.8 9.2 76 5-92 18-93 (106)
23 2hj8_A Interferon-induced 17 k 73.6 11 0.00037 30.7 7.3 77 1-88 1-77 (88)
24 2kjr_A CG11242; UBL, ubiquitin 71.0 18 0.0006 30.6 8.2 72 3-80 14-88 (95)
25 1v6e_A Cytoskeleton-associated 69.8 6.9 0.00024 32.6 5.4 64 5-73 8-73 (95)
26 2kj6_A Tubulin folding cofacto 69.2 14 0.00048 31.5 7.2 75 3-82 13-90 (97)
27 2npt_B Mitogen-activated prote 61.2 70 0.0024 28.0 10.0 73 4-87 20-97 (100)
28 1v5t_A 8430435I17RIK protein; 60.2 31 0.001 28.3 7.5 60 4-74 7-69 (90)
29 2c60_A Human mitogen-activated 59.6 86 0.0029 27.8 10.4 73 4-87 31-108 (111)
30 2daf_A FLJ35834 protein; hypot 58.7 67 0.0023 28.8 9.9 76 2-87 13-88 (118)
31 3nis_A E3 ubiquitin-protein li 58.6 8 0.00028 32.6 3.7 49 374-424 3-55 (82)
32 3phx_B Ubiquitin-like protein 58.6 19 0.00066 28.1 5.8 75 1-87 1-76 (79)
33 4b6w_A Tubulin-specific chaper 58.1 7 0.00024 32.5 3.2 55 30-85 25-81 (86)
34 1ef1_A Moesin; membrane, FERM 57.8 22 0.00074 34.8 7.2 63 5-73 2-64 (294)
35 2gim_A Plastocyanin; beta shee 56.4 35 0.0012 28.0 7.3 26 502-532 66-91 (106)
36 1v5o_A 1700011N24RIK protein; 54.8 51 0.0017 27.6 8.1 70 5-84 8-81 (102)
37 3ny3_A E3 ubiquitin-protein li 52.3 9.7 0.00033 31.5 3.1 32 393-424 16-51 (75)
38 1wh3_A 59 kDa 2'-5'-oligoadeny 51.5 70 0.0024 25.2 8.2 73 4-87 7-79 (87)
39 3mtn_B UBA80, ubcep1, ubiquiti 51.4 16 0.00056 28.6 4.3 78 3-91 2-79 (85)
40 1yqb_A Ubiquilin 3; structural 51.3 49 0.0017 27.7 7.5 71 4-86 22-92 (100)
41 1we7_A SF3A1 protein; structur 48.4 70 0.0024 27.2 8.2 77 3-89 24-109 (115)
42 2uyz_B Small ubiquitin-related 48.2 50 0.0017 25.7 6.7 74 1-86 1-74 (79)
43 2f1e_A Protein APAG; APAG prot 47.8 38 0.0013 30.5 6.5 61 463-538 50-111 (127)
44 3o27_A Putative uncharacterize 47.7 12 0.00042 30.7 2.9 31 35-65 29-59 (68)
45 1wxv_A BAG-family molecular ch 47.2 94 0.0032 25.1 8.4 66 1-74 4-71 (92)
46 2vrw_B P95VAV, VAV1, proto-onc 47.1 12 0.0004 38.5 3.5 36 376-413 354-392 (406)
47 2d8v_A Zinc finger FYVE domain 46.7 9.1 0.00031 31.4 2.0 42 381-426 10-56 (67)
48 1xvs_A Protein APAG; MCSG APC2 46.6 36 0.0012 30.7 6.1 61 463-538 49-110 (126)
49 2ys4_A Hydrocephalus-inducing 46.0 12 0.00042 32.3 2.9 34 501-535 74-107 (122)
50 2i1j_A Moesin; FERM, coiled-co 45.8 34 0.0012 37.7 7.1 66 1-72 1-66 (575)
51 1wx8_A Riken cDNA 4931431F19; 44.4 27 0.00093 28.5 4.7 69 4-84 17-85 (96)
52 1v86_A DNA segment, CHR 7, way 44.1 48 0.0017 27.4 6.3 59 3-74 16-74 (95)
53 1d4b_A CIDE B, human cell deat 43.3 47 0.0016 30.0 6.3 56 6-74 37-92 (122)
54 1j8c_A Ubiquitin-like protein 43.1 38 0.0013 29.8 5.7 71 4-86 32-102 (125)
55 3n3k_B Ubiquitin; hydrolase, p 42.4 23 0.00078 27.8 3.8 76 4-90 3-78 (85)
56 2kan_A Uncharacterized protein 40.4 1.2E+02 0.004 25.1 8.0 71 5-87 16-87 (94)
57 1tza_A APAG protein, SOR45; st 40.1 39 0.0013 30.8 5.4 61 463-538 49-110 (134)
58 2e6j_A Hydin protein; PAPD, st 37.4 54 0.0019 27.1 5.6 47 501-549 64-110 (112)
59 1xq4_A Protein APAG; all beta 37.2 62 0.0021 29.6 6.3 61 463-538 54-115 (139)
60 1wy8_A NP95-like ring finger p 36.0 1.6E+02 0.0054 23.3 8.0 75 4-88 7-82 (89)
61 1wgg_A Ubiquitin carboxyl-term 35.4 70 0.0024 26.6 5.9 45 4-55 7-52 (96)
62 1f2r_I Inhibitor of caspase-ac 34.8 59 0.002 28.5 5.4 57 6-72 20-76 (100)
63 2pjh_A Protein NPL4, nuclear p 34.7 26 0.00089 28.6 3.0 49 1-56 1-49 (80)
64 1x1m_A Ubiquitin-like protein 34.3 1.3E+02 0.0045 25.2 7.6 77 5-86 13-98 (107)
65 2dzi_A Ubiquitin-like protein 33.7 53 0.0018 25.4 4.6 58 4-73 7-65 (81)
66 3k9o_B Ubiquitin, UBB+1; E2-25 33.6 55 0.0019 26.4 4.9 75 6-91 3-77 (96)
67 3cvb_A Plastocyanin; cupredoxi 33.4 55 0.0019 26.6 4.9 27 502-533 65-91 (105)
68 2kk8_A Uncharacterized protein 33.1 75 0.0026 25.7 5.6 62 16-86 21-82 (84)
69 2ffw_A Midline-1; B-BOX, ring 32.9 22 0.00077 28.9 2.4 33 379-412 30-62 (78)
70 1lyq_A PCOC copper resistance 32.9 32 0.0011 29.6 3.5 30 507-537 65-94 (104)
71 2c9r_A COPC, copper resistance 32.6 35 0.0012 29.2 3.6 33 504-537 60-92 (102)
72 2l7r_A Ubiquitin-like protein 32.3 80 0.0027 25.8 5.7 69 5-86 20-88 (93)
73 2kvz_A ISPE; structural genomi 32.1 31 0.0011 29.2 3.1 25 43-69 1-25 (85)
74 2i1s_A Hypothetical protein; m 32.0 1.6E+02 0.0055 27.4 8.4 38 4-47 8-49 (188)
75 2bwf_A Ubiquitin-like protein 30.6 71 0.0024 24.4 4.9 57 5-73 5-61 (77)
76 3a9j_A Ubiquitin; protein comp 30.4 74 0.0025 24.0 4.9 68 7-86 3-71 (76)
77 3dbh_I NEDD8; cell cycle, acti 28.7 48 0.0016 26.2 3.6 71 4-86 12-83 (88)
78 1wf9_A NPL4 family protein; be 28.7 80 0.0027 26.7 5.2 47 5-57 8-54 (107)
79 2klc_A Ubiquilin-1; ubiquitin- 28.6 1.1E+02 0.0039 25.4 6.1 70 5-86 26-95 (101)
80 1wju_A NEDD8 ultimate buster-1 26.7 1.4E+02 0.0048 25.6 6.4 76 6-92 17-95 (100)
81 3ky9_A Proto-oncogene VAV; cal 26.7 36 0.0012 36.9 3.3 37 375-413 525-564 (587)
82 3v6c_B Ubiquitin; structural g 26.6 67 0.0023 25.9 4.2 70 4-85 17-87 (91)
83 2eel_A Cell death activator CI 26.5 1.2E+02 0.0039 26.1 5.7 56 6-73 11-66 (91)
84 1dvp_A HRS, hepatocyte growth 26.1 37 0.0013 32.4 2.9 34 378-412 160-194 (220)
85 4hcn_B Polyubiquitin, ubiquiti 25.6 46 0.0016 27.5 3.1 71 4-86 22-93 (98)
86 1h4r_A Merlin; FERM, neurofibr 25.2 1.1E+02 0.0036 30.3 6.2 76 4-86 22-97 (314)
87 3zyq_A Hepatocyte growth facto 25.2 40 0.0014 32.6 3.0 34 378-412 163-197 (226)
88 1wyw_B Ubiquitin-like protein 24.9 1.6E+02 0.0053 24.3 6.3 70 5-86 22-92 (97)
89 2kut_A Uncharacterized protein 24.7 93 0.0032 27.8 5.1 53 466-521 23-77 (122)
90 1nep_A EPV20, BNPC2, epididyma 24.2 1.3E+02 0.0044 26.4 5.9 34 503-536 82-117 (130)
91 3qij_A Protein 4.1; cytoskelet 24.2 1.9E+02 0.0064 28.6 7.8 65 4-74 17-82 (296)
92 2ojr_A Ubiquitin; lanthide-bin 23.9 1.2E+02 0.0041 25.6 5.5 72 4-86 35-106 (111)
93 1wgd_A Homocysteine-responsive 23.7 2.1E+02 0.0072 23.0 6.8 72 5-86 8-84 (93)
94 2dzm_A FAS-associated factor 1 23.4 1.2E+02 0.004 25.9 5.3 69 5-84 10-78 (100)
95 2xzz_A Protein-glutamine gamma 23.4 56 0.0019 28.1 3.3 43 476-524 37-79 (102)
96 1wfk_A Zinc finger, FYVE domai 23.2 53 0.0018 27.5 3.0 37 375-412 5-42 (88)
97 2row_A RHO-associated protein 22.9 43 0.0015 28.2 2.4 36 374-411 30-70 (84)
98 1dj7_B Ferredoxin thioredoxin 22.8 29 0.001 29.0 1.3 18 5-25 51-68 (75)
99 2kd0_A LRR repeats and ubiquit 22.3 2.2E+02 0.0076 22.8 6.6 59 3-73 11-69 (85)
100 4fbj_B NEDD8; effector-HOST ta 21.6 75 0.0026 25.6 3.6 66 16-91 11-76 (88)
101 1vfy_A Phosphatidylinositol-3- 21.1 57 0.002 26.1 2.7 36 376-412 8-44 (73)
102 2kzr_A Ubiquitin thioesterase 20.9 1.8E+02 0.0061 23.3 5.7 53 6-66 2-55 (86)
103 3isy_A Bsupi, intracellular pr 20.6 61 0.0021 29.0 3.0 24 502-525 73-96 (120)
104 1ndd_A NEDD8, protein (ubiquit 20.5 1.4E+02 0.0048 22.4 4.8 68 7-86 3-71 (76)
105 1joc_A EEA1, early endosomal a 20.5 50 0.0017 29.3 2.4 32 380-412 70-102 (125)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=99.59 E-value=4e-15 Score=127.30 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=70.5
Q ss_pred cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
+.+.||+||+.+.|||.+.-+ + ...+..|..+|+++|+|. +.+|+|+|+|+|||+|+|.+|++|.+|+....-+|
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~--~--~~~fe~f~~lv~~lh~L~-~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~plL 79 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRA--S--VSGFQEFSRLLRAVHQIP-GLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPL 79 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGG--G--CCCHHHHHHHHHHHTTCT-TCCCEEEEECTTSCEEECCSHHHHHHHTTSSSSCE
T ss_pred CEEEEEeecCCeeeEeEccCC--C--CCCHHHHHHHHHHHcCCC-CCCEEEEEECCCCCEeeecCHHHHHHHHHhCCCcE
Confidence 568999999999999999843 2 346777999999999994 88999999999999999999999999865443489
Q ss_pred EEEEEec
Q 008160 83 RIDVHLN 89 (575)
Q Consensus 83 ritV~l~ 89 (575)
||.|+.+
T Consensus 80 Rl~Iqrk 86 (86)
T 1wmh_B 80 RLLVQKR 86 (86)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999753
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=99.56 E-value=1.4e-14 Score=124.70 Aligned_cols=80 Identities=21% Similarity=0.376 Sum_probs=69.4
Q ss_pred cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHH----hc
Q 008160 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----QR 78 (575)
Q Consensus 3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~----q~ 78 (575)
+.+.|||.|+||+|||.++. ++++..|.+||+++|++..+..|+|||+|||||.|||.+|.||..|+. .+
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~------~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~ 78 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP------SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNK 78 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT------TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTS
T ss_pred CeEEEEEEeCCeEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccC
Confidence 35899999999999999984 677888999999999999999999999999999999999999998843 12
Q ss_pred CceEEEEEEe
Q 008160 79 LKFLRIDVHL 88 (575)
Q Consensus 79 l~~LritV~l 88 (575)
-..|.|-|+.
T Consensus 79 ~~~l~ihvf~ 88 (89)
T 1vd2_A 79 DSELLIHVFP 88 (89)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEEEEcc
Confidence 3347787764
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=99.55 E-value=2.2e-14 Score=126.26 Aligned_cols=84 Identities=20% Similarity=0.370 Sum_probs=68.0
Q ss_pred ceEEEEEe------CCceeeeeeccCCCCCcc-----cCHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeEEEcCchhH
Q 008160 4 TMVIKVKY------GDTLRRFNARVDENEKLD-----LDIDGLRAKIKSLF-NFPHDSDLTLTYVDEDGDIVTLVDDDDL 71 (575)
Q Consensus 4 ~~viKv~~------gd~lRRf~~~~~~n~~~d-----l~~~~L~~ki~~~F-~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL 71 (575)
.++|||.| ++++|||.++++.+-..+ .++..|++||+++| +|. ..+|+|+|+|||||+|||.+|+||
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~-~~~f~l~Y~DedGDlItiSsDeEL 83 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR-PGGFQAHYRAERGDLVAFSSDEEL 83 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-SSCEEEEEECTTCCEEEECSHHHH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC-CCcEEEEEECCCCCEEEecCHHHH
Confidence 58999999 579999999975211111 46888999999999 566 678999999999999999999999
Q ss_pred HHHHHh-cCceEEEEEEe
Q 008160 72 CDVMRQ-RLKFLRIDVHL 88 (575)
Q Consensus 72 ~~a~~q-~l~~LritV~l 88 (575)
..|+.. +...|||.|+-
T Consensus 84 ~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 84 TMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp HHHHHHCCSSEEEEEEEE
T ss_pred HHHHHhcCCCeEEEEEEc
Confidence 998544 34589998863
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=99.51 E-value=6.1e-14 Score=126.10 Aligned_cols=86 Identities=22% Similarity=0.343 Sum_probs=68.9
Q ss_pred CCcceEEEEEeC------CceeeeeeccCCCCCc-----ccCHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeEEEcCc
Q 008160 1 MESTMVIKVKYG------DTLRRFNARVDENEKL-----DLDIDGLRAKIKSLF-NFPHDSDLTLTYVDEDGDIVTLVDD 68 (575)
Q Consensus 1 ~~~~~viKv~~g------d~lRRf~~~~~~n~~~-----dl~~~~L~~ki~~~F-~l~~d~~~~l~Y~DeDGD~Vtl~dd 68 (575)
|-+ ++|||.|+ +++|||.++++.+-.+ ..++..|++||+++| +|. ..+|+|+|+|||||+|||.+|
T Consensus 18 ~~~-l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 18 MGS-LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-PGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp --C-EEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-SSCEEEEEECTTCCEEEECSH
T ss_pred ccc-EEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-CCcEEEEEECCCCCEEEecCH
Confidence 444 99999996 7999999997532112 247888999999999 677 568999999999999999999
Q ss_pred hhHHHHHHh-cCceEEEEEEe
Q 008160 69 DDLCDVMRQ-RLKFLRIDVHL 88 (575)
Q Consensus 69 ~DL~~a~~q-~l~~LritV~l 88 (575)
++|..|+.. +...|||.|+-
T Consensus 96 eEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 96 EELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp HHHHHHHHHCCSSEEEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEEe
Confidence 999998644 33578998863
No 5
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.47 E-value=2e-14 Score=125.64 Aligned_cols=54 Identities=24% Similarity=0.486 Sum_probs=49.8
Q ss_pred CCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC-CCcccEEEEeCCc
Q 008160 373 MGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-GSEADYIRIDRPV 426 (575)
Q Consensus 373 ~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-~n~H~f~rI~~P~ 426 (575)
..++|.|+.||+|++.||.|.||||.+|+|||||+.||... |..|+|++|.+|.
T Consensus 25 ~~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~~~ 79 (98)
T 2dip_A 25 RLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRN 79 (98)
T ss_dssp CCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSGGGSCEEECCSSS
T ss_pred cccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCCCCCCeeEecCCC
Confidence 57899999999999999999999999999999999999986 4589999998875
No 6
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.46 E-value=6.6e-14 Score=118.64 Aligned_cols=57 Identities=26% Similarity=0.536 Sum_probs=51.4
Q ss_pred CcCCCcccCceecCCCCCCCcccceEEeccCCC---CccchhhhhcC-----C-CcccEEEEeCCc
Q 008160 370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDD---YDLCSICFAAM-----G-SEADYIRIDRPV 426 (575)
Q Consensus 370 ~a~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~D---yDLC~~C~~~~-----~-n~H~f~rI~~P~ 426 (575)
++...++|.++.||+|++.||+|.||||.+|+| ||||+.||... | ..|+|+.|.+|.
T Consensus 12 ~~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 12 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp SSTTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred ccccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 566789999999999999999999999999999 99999999862 3 479999999886
No 7
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=5.1e-14 Score=113.86 Aligned_cols=54 Identities=24% Similarity=0.536 Sum_probs=47.4
Q ss_pred CcCCCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEEEeC
Q 008160 370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIRIDR 424 (575)
Q Consensus 370 ~a~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~rI~~ 424 (575)
.+...+.|. +.||+|+..||.|.||||++|+|||||+.||... | ..|+|++|.+
T Consensus 3 s~~~~v~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 3 SGSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CCSSSCCSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred CCcCCceeC-CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence 456788888 9999999999999999999999999999999985 2 4799998853
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=99.34 E-value=7e-12 Score=107.32 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=69.9
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH---Hh
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ 77 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~---~q 77 (575)
||..+++||.|.|+.|||-+.-. + +.++.+|..|+...|+|. +|+|||.|||||.|+|.++.++.+|+ ..
T Consensus 3 ~~~~v~lkV~f~ge~~rf~vs~~--~--~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k 75 (87)
T 2bkf_A 3 MEPQVTLNVTFKNEIQSFLVSDP--E--NTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK 75 (87)
T ss_dssp CCCCEEEEEEETTEEEEEEESCG--G--GCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEcCCeeEEEeccC--C--CCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEEEecHHHHHHHHHHhcc
Confidence 99999999999999999999532 1 556788999999999996 88999999999999999999999983 23
Q ss_pred cCceEEEEEEe
Q 008160 78 RLKFLRIDVHL 88 (575)
Q Consensus 78 ~l~~LritV~l 88 (575)
..+.|++.|+-
T Consensus 76 ~~n~L~m~v~~ 86 (87)
T 2bkf_A 76 QGNQLQMQVHE 86 (87)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCEEEEEEec
Confidence 36779999853
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.27 E-value=9.5e-12 Score=108.93 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=69.2
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH---Hh
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ 77 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~---~q 77 (575)
||..+++||.|.+++|||-|.-. + +.++.+|..|+...|+|. +|+|||.|||||.|+|..+.++.+|+ ..
T Consensus 11 m~~~v~lkV~f~ge~~rF~Vs~~--~--~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k 83 (101)
T 1wj6_A 11 MEPQVTLNVTFKNEIQSFLVSDP--E--NTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK 83 (101)
T ss_dssp SCSCEEEEEEETTEEEEEEESCT--T--TSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECCCSHHHHHHHHHHHHH
T ss_pred cCccEEEEEEEcCCeeEEEecCC--C--CCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEEEEecHHHHHHHHHHhcc
Confidence 89999999999999999999632 1 456778999999999996 78999999999999999999999983 22
Q ss_pred cCceEEEEEE
Q 008160 78 RLKFLRIDVH 87 (575)
Q Consensus 78 ~l~~LritV~ 87 (575)
..+.|++.|+
T Consensus 84 ~~n~L~m~V~ 93 (101)
T 1wj6_A 84 QGNQLQMQVH 93 (101)
T ss_dssp HTSEEEEECC
T ss_pred CCCEEEEEEe
Confidence 2577999984
No 10
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=99.26 E-value=2e-12 Score=100.96 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=44.0
Q ss_pred ccCceecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEEeCCc
Q 008160 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPV 426 (575)
Q Consensus 376 vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI~~P~ 426 (575)
-|.++.||+|... | |.||||++|+|||||..||....+.|+|.+|..|+
T Consensus 3 ~~~~~~Cd~C~~~-i-g~R~~C~~C~dyDLC~~C~~~~~H~H~m~~~~~~l 51 (52)
T 1tot_A 3 DRFVYTCNECKHH-V-ETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLGL 51 (52)
T ss_dssp CSSCEEETTTTEE-E-SSEEEESSSSSCEECHHHHHHHCCCSSEEEECSSC
T ss_pred CcCEEECCCCCCC-C-cceEEcCCCCCchhHHHHHhCCCCCCceEEecCCC
Confidence 4567999999975 5 99999999999999999999987799999998775
No 11
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=99.08 E-value=3.1e-10 Score=99.23 Aligned_cols=77 Identities=26% Similarity=0.436 Sum_probs=62.1
Q ss_pred ceEEEEEeC--------CceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCc----eEEEEecCCCCeEEEcCchhH
Q 008160 4 TMVIKVKYG--------DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSD----LTLTYVDEDGDIVTLVDDDDL 71 (575)
Q Consensus 4 ~~viKv~~g--------d~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~----~~l~Y~DeDGD~Vtl~dd~DL 71 (575)
.+-|||.|+ +|+|-+.++. +.+|.+|.+||++-|++..+++ +.|||+|||||+|||.+|+||
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~------~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl 78 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEK------VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDW 78 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECT------TCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecC------CCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHH
Confidence 478999999 6777777773 6778899999999999876666 689999999999999999999
Q ss_pred HHHH---Hhc-CceEEEEE
Q 008160 72 CDVM---RQR-LKFLRIDV 86 (575)
Q Consensus 72 ~~a~---~q~-l~~LritV 86 (575)
.-|+ +.. .+.|.|-|
T Consensus 79 ~~A~e~~~e~~~~~l~Iwv 97 (98)
T 1q1o_A 79 NVAKEMLAENNEKFLNIRL 97 (98)
T ss_dssp HHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHhhhcCeEEEEE
Confidence 9763 222 46566654
No 12
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=98.61 E-value=4.6e-08 Score=82.11 Aligned_cols=46 Identities=33% Similarity=0.423 Sum_probs=40.3
Q ss_pred ccCHHHHHHHHHHHhCCCCC----CceEEEEecCCCCeEEEcCchhHHHH
Q 008160 29 DLDIDGLRAKIKSLFNFPHD----SDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 29 dl~~~~L~~ki~~~F~l~~d----~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
++.+..|.+||++-|++.+. ..+.|||+|||||+|||.+|+||.-|
T Consensus 11 ~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A 60 (77)
T 1pqs_A 11 VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVA 60 (77)
T ss_dssp CCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHH
T ss_pred CCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHH
Confidence 66688899999999996533 45899999999999999999999976
No 13
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=98.33 E-value=8.1e-07 Score=78.17 Aligned_cols=59 Identities=25% Similarity=0.459 Sum_probs=45.9
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ 77 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q 77 (575)
+|-.|..+++++.-+ .+.+|..+||+.|+ .+++.|+|.|.|||+|+|.||+|+..++++
T Consensus 19 ~irdI~veedl~~~P-----------~ykdLl~lmr~~F~---~~DIaLNYrD~eGDLIrilddeDv~lmi~~ 77 (107)
T 1oey_J 19 TIKDIAVEEDLSSTP-----------LLKDLLELTRREFQ---REDIALNYRDAEGDLVRLLSDEDVALMVRQ 77 (107)
T ss_dssp EEEEEEECSCTTCCC-----------CHHHHHHHHHHHHC---CSSEEEEEECTTSCEEECCSHHHHHHHHHH
T ss_pred eeeeEEEccccccCC-----------CHHHHHHHHHHHhc---ccceeeeeecCCCCEEEEcchHHHHHHHHH
Confidence 444555555554433 25669999999999 679999999999999999999999965443
No 14
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.95 E-value=3e-05 Score=66.00 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=58.4
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecC-CCCeEEEcCchhHHHHHHhcCceEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~De-DGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
++|||.|. ++-=+.++ .++++.+|+.||++-|+++ ...++|.|+|+ .|.+| |..|+||.+|..+--+- |
T Consensus 6 ~~VKV~~~-~tvairvp------~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~~n~-~ 75 (83)
T 1oey_A 6 YTLKVHYK-YTVVMKTQ------PGLPYSQVRDMVSKKLELR-LEHTKLSYRPRDSNELV-PLSEDSMKDAWGQVKNY-C 75 (83)
T ss_dssp EEEEEESS-SEEEEEEC------TTCCHHHHHHHHHHHTTCC-GGGCCEEECCTTCSSCE-ECCTTTHHHHHTTCBTT-E
T ss_pred EEEEEEEE-EEEEEECC------CCCCHHHHHHHHHHHhCCC-cceeEEEeeCCCCCCee-ccChHHHHHHHHhccCC-c
Confidence 79999999 45455555 3788999999999999999 56899999995 67778 99999999886663232 4
Q ss_pred EEEEec
Q 008160 84 IDVHLN 89 (575)
Q Consensus 84 itV~l~ 89 (575)
||+...
T Consensus 76 LtL~C~ 81 (83)
T 1oey_A 76 LTLWCE 81 (83)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 555443
No 15
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=96.86 E-value=0.0033 Score=53.75 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=54.3
Q ss_pred cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecC-CCCeEEEcCchhHHHHHHhcCc
Q 008160 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVTLVDDDDLCDVMRQRLK 80 (575)
Q Consensus 3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~De-DGD~Vtl~dd~DL~~a~~q~l~ 80 (575)
+++=||+-|.||+==+.++ .|+++.+|..||..=+++ ++.+.+.|+|| .|+ -|.+|+||..|+..+.|
T Consensus 11 ~~~KVK~yy~DDIiAIrvP------~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~--~i~sD~dl~~aiqrn~K 79 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLK------GDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGE--EIKTDSQVSNIIQAKLK 79 (85)
T ss_dssp CCEEEEECBTTCCEEEEEC------SCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCS--CCCSHHHHHHHHHTTCC
T ss_pred CceEEEEEecCcEEEEECC------CCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCC--cccCHHHHHHHHHhcCe
Confidence 3467999999998666666 378899999999999999 35555688887 777 89999999977666555
No 16
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=94.43 E-value=0.1 Score=45.58 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=35.3
Q ss_pred cccCHHHHHHHHHHHhCCCCCCceE-EEEecCCCCeEEEcCchhHHH
Q 008160 28 LDLDIDGLRAKIKSLFNFPHDSDLT-LTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 28 ~dl~~~~L~~ki~~~F~l~~d~~~~-l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
..|+|++|..-|.+++- ++..+ +-|-|||||-||.-+|++|-.
T Consensus 35 ~~L~FrDvL~~I~~vmP---~aT~TAFeYEDE~gDRITVRSDeE~kA 78 (106)
T 2npt_A 35 PQLLFRDVLDVIGQVLP---EATTTAFEYEDEDGDRITVRSDEEMKA 78 (106)
T ss_dssp -CCCHHHHHHHHHHHST---TSCCSEEEEECTTSCEEEECSHHHHHH
T ss_pred ccccHHHHHHHHHHhCc---cceeeeeeeccccCCeeEEcchHHHHH
Confidence 57899999999999973 33333 499999999999999998873
No 17
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=89.84 E-value=3.7 Score=36.16 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=57.7
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHH-----hc
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-----QR 78 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~-----q~ 78 (575)
++-||..|++--|=+.++- -+.|.+|..|+.++|.- .+.|.|.|- -=+|-|...+||-.|+. ..
T Consensus 8 dvRiKfE~~GEkRIi~f~R------Pv~f~eL~~Kv~~~fGq----~ldL~y~n~-EllIpl~sQeDLDkaIellDrss~ 76 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPR------PVKLEDLRSKAKIAFGQ----SMDLHYTNN-ELVIPLTTQDDLDKAVELLDRSIH 76 (103)
T ss_dssp EEEEEEEETTEEEEEEEES------SCCHHHHHHHHHHHHSS----CEEEEECSS-SSCEECCSHHHHHHHHHHHHHCSS
T ss_pred cEEEEEEecCeEEEEeccC------CccHHHHHHHHHHHhCC----eeeEEEecc-eEEEeccCHHHHHHHHHHHccCCc
Confidence 5789999999999888883 45677899999999976 477899964 56889999999988732 23
Q ss_pred CceEEEEEE
Q 008160 79 LKFLRIDVH 87 (575)
Q Consensus 79 l~~LritV~ 87 (575)
.+.|||-+.
T Consensus 77 ~kSLrIlL~ 85 (103)
T 2cu1_A 77 MKSLKILLV 85 (103)
T ss_dssp CCSEEEEEE
T ss_pred ccceEEEEe
Confidence 477999553
No 18
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=86.71 E-value=0.32 Score=41.33 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=27.6
Q ss_pred eecCCCCCCCcccceEEeccCCCCccchhhhhc
Q 008160 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~ 412 (575)
+.||.|+.. +.|.+|+|..| +|+|-..|...
T Consensus 48 ~~C~~C~~~-~~~~~Y~C~~C-~f~lH~~Ca~~ 78 (89)
T 1v5n_A 48 YTCDKCEEE-GTIWSYHCDEC-DFDLHAKCALN 78 (89)
T ss_dssp CCCTTTSCC-CCSCEEECTTT-CCCCCHHHHHC
T ss_pred eEeCCCCCc-CCCcEEEcCCC-CCeEcHHhcCC
Confidence 689999975 89999999999 79999999765
No 19
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=83.90 E-value=19 Score=31.21 Aligned_cols=80 Identities=24% Similarity=0.359 Sum_probs=60.9
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHH----
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR---- 76 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~---- 76 (575)
|..++-||.-|.+--|=+.+. | -+.+.+|..|+..+|+-. +-|-|. ..-=+|-|...+||-.|+.
T Consensus 1 ~q~dvRIKfE~~gEKRIi~f~-R-----Pvkf~dl~qkv~~afGq~----ldl~y~-nnEL~iPL~~Q~DLDkAvelLDr 69 (94)
T 2jrh_A 1 MQSDVRIKFEHNGERRIIAFS-R-----PVKYEDVEHKVTTVFGQP----LDLHYM-NNELSILLKNQDDLDKAIDILDR 69 (94)
T ss_dssp -CCCEEEEEEETTEEEEEEEC-S-----SCCHHHHHHHHHHHHCSS----EEEEEE-CSSCEEECCSHHHHHHHHHHHHH
T ss_pred CCCceEEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCCe----eeeEEe-cceeEEeccCHHHHHHHHHHhcc
Confidence 677899999999998888777 2 345777999999999765 557777 4567888999999988842
Q ss_pred -hcCceEEEEEEecCC
Q 008160 77 -QRLKFLRIDVHLNND 91 (575)
Q Consensus 77 -q~l~~LritV~l~~~ 91 (575)
...|.|||-+.....
T Consensus 70 s~~mkSLRIlL~~~~~ 85 (94)
T 2jrh_A 70 SSSMKSLRILLLSQDR 85 (94)
T ss_dssp STTTTEEEEEEEECSS
T ss_pred CccccceEEEEEcCCc
Confidence 235889998865443
No 20
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=82.62 E-value=2.7 Score=36.99 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeE-EE-cCchhHHHHHHhc
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDVMRQR 78 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~V-tl-~dd~DL~~a~~q~ 78 (575)
|.+.+.|+|+....-+.+.+.+. .+.....|..||++.+++++ +...|.|.+.+|-.+ .| .|+.-|.+.=.+.
T Consensus 3 m~~~v~l~V~~~~~~~~~e~~v~----~~~TV~~lK~ki~~~~Gip~-~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~ 77 (122)
T 1t0y_A 3 MTEVYDLEITTNATDFPMEKKYP----AGMSLNDLKKKLELVVGTTV-DSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD 77 (122)
T ss_dssp CCCEEEEEEEESSCCSCEEEEEE----TTSBHHHHHHHHHHHHCCCT-TTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred CCCEEEEEEEECCCCccEEEEeC----CCCcHHHHHHHHHHHhCCCH-HHeEEEEecCCCccccccCCCcCCHHHCCCCC
Confidence 77778888888655444666553 35667889999999999996 578889988778766 34 4444455432344
Q ss_pred Cc
Q 008160 79 LK 80 (575)
Q Consensus 79 l~ 80 (575)
..
T Consensus 78 g~ 79 (122)
T 1t0y_A 78 GY 79 (122)
T ss_dssp SE
T ss_pred CC
Confidence 33
No 21
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.83 E-value=6.6 Score=32.75 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=30.8
Q ss_pred ccCHHHHHHHHHHHhCCCCCCceEEEEecCC-CCe-EEEcCchh
Q 008160 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDED-GDI-VTLVDDDD 70 (575)
Q Consensus 29 dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeD-GD~-Vtl~dd~D 70 (575)
++....|..+|+++|++++ ....|-|.|++ +.. +.|+||+.
T Consensus 32 ~~TV~~LK~~i~~~~gip~-~~q~L~~~~~~~~~~~~~L~~d~~ 74 (97)
T 1wjn_A 32 SMTVQKVKGLLSRLLKVPV-SELLLSYESSKMPGREIELENDLQ 74 (97)
T ss_dssp TSBHHHHHHHHHTTTTCCT-TTCEEEEECTTSCSCEEECCCSSS
T ss_pred CCCHHHHHHHHHHHHCCCh-hHeEEEEEcCCCCceeeccCCCcc
Confidence 5668889999999999997 57888888753 434 44666664
No 22
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.76 E-value=16 Score=30.82 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=49.8
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
+.|+|+..+. +|.+.+.. +....+|..+|++.+++++ ....|.|. |- .|.|+.-|.+.-.+....|.+
T Consensus 18 m~I~Vk~~~g--~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~qrLi~~---Gk--~L~D~~tL~~~gi~~g~~i~l 85 (106)
T 1wx7_A 18 IKVTVKTPKD--KEDFSVTD----TCTIQQLKEEISQRFKAHP-DQLVLIFA---GK--ILKDPDSLAQCGVRDGLTVHL 85 (106)
T ss_dssp EEEEEECSSC--EEEEEEET----TCCHHHHHHHHHHHHTCCT-TTEEEEET---TE--ECCTTSCHHHHTCCTTEEEEE
T ss_pred EEEEEEeCCC--cEEEEECC----CCcHHHHHHHHHHHHCcCh-hhEEEEEC---CE--ECCCcCcHHHcCCCCCCEEEE
Confidence 5677776554 36777652 4567889999999999996 46777785 32 466766777653444555666
Q ss_pred EEEecCCc
Q 008160 85 DVHLNNDK 92 (575)
Q Consensus 85 tV~l~~~~ 92 (575)
.+.+.+..
T Consensus 86 ~~~~~~~~ 93 (106)
T 1wx7_A 86 VIKRQHRA 93 (106)
T ss_dssp EECCCCCS
T ss_pred EEcCCCCC
Confidence 55444443
No 23
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=73.62 E-value=11 Score=30.73 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=51.5
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCc
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~ 80 (575)
|+..+.|+|+.-+. +.|.+.+.. +-....|..+|++..+++++ ...|.|. |- .|.|+.-|.+.-.+...
T Consensus 1 m~~~m~I~Vk~~~g-~~~~~~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~---Gk--~L~D~~tL~~~~I~~g~ 69 (88)
T 2hj8_A 1 MDEPLSILVRNNKG-RSSTYEVRL----TQTVAHLKQQVSGLEGVQDD-LFWLTFE---GK--PLEDQLPLGEYGLKPLS 69 (88)
T ss_dssp -CCEEEEEEEETTS-CEEEEEEES----SSBHHHHHHHHHHHTCSCTT-TEEEESS---SS--CCCTTSBHHHHHCSTTC
T ss_pred CCccEEEEEECCCC-CEEEEEECC----CCcHHHHHHHHHHHhCCChh-HEEEEEC---CE--ECCCCCcHHHcCCCCCC
Confidence 77778888887322 555666642 44578899999999999975 6677785 43 35677777765455566
Q ss_pred eEEEEEEe
Q 008160 81 FLRIDVHL 88 (575)
Q Consensus 81 ~LritV~l 88 (575)
.|.+.+.+
T Consensus 70 ~i~l~~~~ 77 (88)
T 2hj8_A 70 TVFMNLRL 77 (88)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEEc
Confidence 56666543
No 24
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=71.01 E-value=18 Score=30.62 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=47.1
Q ss_pred cceEEEEEeCCc-eeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeE-EE-cCchhHHHHHHhcC
Q 008160 3 STMVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDVMRQRL 79 (575)
Q Consensus 3 ~~~viKv~~gd~-lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~V-tl-~dd~DL~~a~~q~l 79 (575)
+.+.|+|+.... -|.+.+.+. .+.....|..||++.++++++ ...|-|.| +|..+ .| .|+.-|.+.=.+..
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~----~~~TV~~LK~kI~~~~GiP~~-~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~g 87 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLA----KDLTVAQLKTKLEILTGGCAG-TMKVQVFK-GDTCVSTMDNNDAQLGYYANSDG 87 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEE----TTCBHHHHHHHHHHHHCSCTT-TEEEEEEE-TTEEEEECCCTTSBHHHHCCSSS
T ss_pred CeEEEEEEECCCCceEEEEEeC----ccCHHHHHHHHHHHHHCcCHH-HeEEEEec-CCcccceeCCCCCCHhHCCcCCC
Confidence 346777877554 355666664 355678899999999999975 66777776 46554 45 45445665334444
Q ss_pred c
Q 008160 80 K 80 (575)
Q Consensus 80 ~ 80 (575)
.
T Consensus 88 s 88 (95)
T 2kjr_A 88 L 88 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.79 E-value=6.9 Score=32.55 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=45.4
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEE-E-cCchhHHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT-L-VDDDDLCD 73 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vt-l-~dd~DL~~ 73 (575)
+.|+|+....-+.+.+.+. .+.....|..||+..+++++ +...|.|.+.+|-.+. | .|+.-|.+
T Consensus 8 v~l~I~~~~~~~~~~~~v~----~~~TV~~lK~ki~~~~gip~-~~qrL~~~~~~g~~~~~l~~D~~tL~~ 73 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYS----RSLTIAEFKCKLELVVGSPA-SCMELELYGADDKFYSKLDQEDALLGS 73 (95)
T ss_dssp EEEEEEETTSSSCEEEEEC----TTSBHHHHHHHHHHHTCSCT-TTCBCEEECSSSCEEEECCCSSSBTTS
T ss_pred EEEEEEECCCCeeEEEEcC----ccCHHHHHHHHHHHHHCCCH-HHeEEEEeCCCCccccccCCCcCCHhH
Confidence 7778887655455777764 35567889999999999996 5777888887777653 4 44444543
No 26
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=69.15 E-value=14 Score=31.48 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=49.8
Q ss_pred cceEEEEEeCCc-eeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeE-EE-cCchhHHHHHHhcC
Q 008160 3 STMVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDVMRQRL 79 (575)
Q Consensus 3 ~~~viKv~~gd~-lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~V-tl-~dd~DL~~a~~q~l 79 (575)
+.+.|.|+.... .+.+.+.+. .+.....|..||++.++++++ ...|-|.+.+|..| .| .|+.-|.+.=.+..
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~----~~~TV~~LK~kIe~~~Gip~~-~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g 87 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFS----PQMSVEAVKEKLWKKCGTSVN-SMALELYDDSGSKVAVLSDDSRPLGFFSPFDG 87 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEEC----TTCCHHHHHHHHHHHHCCCTT-SEEEEEECSSSCBCCCSSGGGSCHHHHCCCSC
T ss_pred ceEEEEEEECCCCceEEEEEeC----CCChHHHHHHHHHHHHCcCHH-HeEEEEecCCCcccceecCCcCCHHHCCCCCC
Confidence 457777777444 345666664 366788899999999999974 77788888777654 34 44445665434444
Q ss_pred ceE
Q 008160 80 KFL 82 (575)
Q Consensus 80 ~~L 82 (575)
..|
T Consensus 88 ~~I 90 (97)
T 2kj6_A 88 FRL 90 (97)
T ss_dssp CEE
T ss_pred CEE
Confidence 433
No 27
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=61.25 E-value=70 Score=27.96 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=55.1
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh-----c
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----R 78 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q-----~ 78 (575)
++-||.-|.+--|=|.++ | -+.+.+|..|+..+|+.. +-|-|. ..-=+|-|...+||-.|+.. .
T Consensus 20 dvRIKfE~~gEkRIi~f~-R-----Pv~f~el~~kv~~afGq~----ldl~y~-nnEL~iPL~~Q~DLDkAvelLDrs~~ 88 (100)
T 2npt_B 20 DVRVKFEHRGEKRILQFP-R-----PVKLEDLRSKAKIAFGQS----MDLHYT-NNELVIPLTTQDDLDKAVELLDRSIH 88 (100)
T ss_dssp CEEEEEEETTEEEEEEEC-S-----SCCHHHHHHHHHHHHTSC----EEEEEE-ETTEEEECCCHHHHHHHHHHHHHCSS
T ss_pred ceEEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCCe----eeeEEe-cceeEEecccHHHHHHHHHHhccCcc
Confidence 477999999998888877 2 345777999999999765 557777 34567788888899888422 3
Q ss_pred CceEEEEEE
Q 008160 79 LKFLRIDVH 87 (575)
Q Consensus 79 l~~LritV~ 87 (575)
.+.|||-+.
T Consensus 89 ~kSLrIlL~ 97 (100)
T 2npt_B 89 MKSLKILLV 97 (100)
T ss_dssp CCSEEEEEE
T ss_pred ccceEEEEe
Confidence 577888774
No 28
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=60.15 E-value=31 Score=28.27 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=42.0
Q ss_pred ceEEEEEeCCceeeeee-ccCCCCCcccCHHHHHHHHHHHhCCCCCCceEE--EEecCCCCeEEEcCchhHHHH
Q 008160 4 TMVIKVKYGDTLRRFNA-RVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTL--TYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~-~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l--~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
.+.|+|++++ +.|.+ .+.. +-...+|..+|++..+++++..-.| +|. | -.|.|+..|.+.
T Consensus 7 ~m~i~Vk~~g--~~~~i~~v~~----~~TV~~lK~~I~~~~gip~~~QkLi~~k~~---G--k~L~D~~~L~~~ 69 (90)
T 1v5t_A 7 GLPIIVKWGG--QEYSVTTLSE----DDTVLDLKQFLKTLTGVLPERQKLLGLKVK---G--KPAENDVKLGAL 69 (90)
T ss_dssp SCCEEEEETT--EEEEECSCCS----SSBHHHHHHHHHHHTCCCTTTCEEESCEET---T--EECCTTSBHHHH
T ss_pred eEEEEEEECC--EEEEEEEeCC----CCCHHHHHHHHHHHHCcCHHHeEEEeeccC---C--cCcCCCCCHHHc
Confidence 4667888876 56777 6643 3467789999999999998655544 263 4 246777777764
No 29
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=59.62 E-value=86 Score=27.78 Aligned_cols=73 Identities=23% Similarity=0.344 Sum_probs=54.5
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh-----c
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----R 78 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q-----~ 78 (575)
++-||..|.+.-|=+.+. | -+.+.+|..|++.+|.-. +-|-|. +.-=+|-|...+||-.|+.. .
T Consensus 31 dvRIKfE~~gEKRIiqf~-R-----Pvkf~dl~qkv~~afGq~----ldl~y~-nnEL~IPL~~Q~DLDkAvelLDrs~~ 99 (111)
T 2c60_A 31 DVRIKFEHNGERRIIAFS-R-----PVKYEDVEHKVTTVFGQP----LDLHYM-NNELSILLKNQDDLDKAIDILDRSSS 99 (111)
T ss_dssp CEEEEEEETTEEEEEEEC-S-----SCCHHHHHHHHHHHHSSC----CEEEEE-CSSCEEECCSHHHHHHHHHHHHHCSS
T ss_pred ceEEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCCe----eeeEEe-cceEEEecccHHHHHHHHHHhccCcc
Confidence 477999999988777776 2 345777999999999765 446777 45677888899999888422 3
Q ss_pred CceEEEEEE
Q 008160 79 LKFLRIDVH 87 (575)
Q Consensus 79 l~~LritV~ 87 (575)
.|.|||-+.
T Consensus 100 mkSLRIlL~ 108 (111)
T 2c60_A 100 MKSLRILLL 108 (111)
T ss_dssp CCSEEEEEE
T ss_pred ccceEEEEe
Confidence 577888763
No 30
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.73 E-value=67 Score=28.80 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=54.7
Q ss_pred CcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCce
Q 008160 2 ESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKF 81 (575)
Q Consensus 2 ~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~ 81 (575)
|+.++|||+....--+|.+.+. .+....+|..++...|++++ +.+.|.|. |- .|-|++=|...=.+....
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~----~d~TV~dLKe~ls~~~~iP~-e~qrLIy~---GK--iLKD~eTL~~~gIk~g~T 82 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFK----VDTILKYLKDHFSHLLGIPH-SVLQIRYS---GK--ILKNNETLVQHGVKPQEI 82 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEEC----SSSCSHHHHHHHHHHHTCCT-TTEEEEET---TE--EECSSCCHHHHSCCSSCE
T ss_pred CccEEEEEEEcCCCcEEEEEeC----CCCcHHHHHHHHHhhhCCCh-HHEEEEEC---Ce--EcCCcchHHHcCCCCCCE
Confidence 5678999996655578888875 36667789999999999996 57888996 65 346766676543344455
Q ss_pred EEEEEE
Q 008160 82 LRIDVH 87 (575)
Q Consensus 82 LritV~ 87 (575)
+.+.++
T Consensus 83 IhLvi~ 88 (118)
T 2daf_A 83 VQVEIF 88 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666663
No 31
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=58.65 E-value=8 Score=32.59 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=33.1
Q ss_pred CcccCceecCCCCCCCcccceEEeccCC---CCccchhhhhcC-CCcccEEEEeC
Q 008160 374 GMFHKGVRCDGCGVHPITGPRFKSKVKD---DYDLCSICFAAM-GSEADYIRIDR 424 (575)
Q Consensus 374 ~~vH~GV~CDgC~~~PI~G~RYKCsvC~---DyDLC~~C~~~~-~n~H~f~rI~~ 424 (575)
...|+|-.|.. .-..-..-|+|..|. .+-||..||... |..|.|.....
T Consensus 3 ~~~h~g~~Cg~--vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s 55 (82)
T 3nis_A 3 VHKHTGRNCGR--KFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDIC 55 (82)
T ss_dssp CCCCTTSCCCC--BCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEEC
T ss_pred ccccCCCCCCC--cccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEe
Confidence 34677766642 112234569999994 466899999885 56898877654
No 32
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=58.63 E-value=19 Score=28.14 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCcceEEEEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcC
Q 008160 1 MESTMVIKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRL 79 (575)
Q Consensus 1 ~~~~~viKv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l 79 (575)
|++.+.|.|+. ++. .|.+.+.. +-....|..+|++.++++++ ...|-|.. -.|.|+.-|.+.-.+..
T Consensus 1 ~~~~m~i~Vk~~~g~--~~~~~v~~----~~tV~~lK~~i~~~~gip~~-~qrL~~~G-----~~L~d~~tL~~~~i~~~ 68 (79)
T 3phx_B 1 MDEPLSILVRNNKGR--SSTYEVRL----TQTVAHLKQQVSGLEGVQDD-LFWLTFEG-----KPLEDQLPLGEYGLKPL 68 (79)
T ss_dssp --CCEEEEEECTTSC--EEEEEECT----TSBHHHHHHHHHHHHTCCGG-GEEEEETT-----EECCTTSBGGGGTCCTT
T ss_pred CCCCEEEEEEeCCCC--EEEEEECC----cChHHHHHHHHHhhcCCCHH-HEEEEECC-----EECCCCCcHHHCCCCCC
Confidence 77888889987 443 44555542 44678899999999999975 56777843 24566666665434445
Q ss_pred ceEEEEEE
Q 008160 80 KFLRIDVH 87 (575)
Q Consensus 80 ~~LritV~ 87 (575)
..|.+.+.
T Consensus 69 ~~l~l~~r 76 (79)
T 3phx_B 69 STVFMNLR 76 (79)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 55666553
No 33
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=58.11 E-value=7 Score=32.50 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEE--EcCchhHHHHHHhcCceEEEE
Q 008160 30 LDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT--LVDDDDLCDVMRQRLKFLRID 85 (575)
Q Consensus 30 l~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vt--l~dd~DL~~a~~q~l~~Lrit 85 (575)
.+...|..||++.++++++ .-.|-|.|.+|.++- +.|+.-|.+.=.|....|.|.
T Consensus 25 ~TI~~lK~ki~~~~Gip~~-~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 25 QTIESIKENVFTHFATPPE-YMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp SBHHHHHHHHHTTSCCCGG-GEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred CcHHHHHHHHHHHHCCCHH-HEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 3577799999999999975 667889999988764 444445554334555545543
No 34
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=57.82 E-value=22 Score=34.83 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=52.0
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
+.+||.+-|....|.+.- .-.-.+|.++|.+-++|...+-|.|.|.|.+|...-|+.+.-|.+
T Consensus 2 i~~~V~l~d~~~~~~v~~------~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~ 64 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQP------NTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTA 64 (294)
T ss_dssp EEEEEEETTEEEEEEECT------TCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGG
T ss_pred EEEEEEECCceEEEEECC------CCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHh
Confidence 789999999865566653 345778999999999999888999999999999888887776654
No 35
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=56.42 E-value=35 Score=27.96 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=20.2
Q ss_pred CCCCCCEEEEEEEeeCCCCCCeEeeEEEeEC
Q 008160 502 GVPVEGEIDIAVDFTAPELPGRYISYWRMSS 532 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~t 532 (575)
.+.|||+..+ .|++|.+||.| |=.|+
T Consensus 66 ~~~pG~~~~~--~f~~~~~~G~y---~y~C~ 91 (106)
T 2gim_A 66 LMSPGQSTST--TFPADAPAGEY---TFYCE 91 (106)
T ss_dssp CCSTTCEEEE--ECCTTCCSEEE---EEECT
T ss_pred eeCCCCEEEE--EEecCCCCceE---EEEeC
Confidence 4889998765 78888999995 55576
No 36
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.79 E-value=51 Score=27.56 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=45.0
Q ss_pred eEEEEEe--CC-ceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCch-hHHHHHHhcCc
Q 008160 5 MVIKVKY--GD-TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD-DLCDVMRQRLK 80 (575)
Q Consensus 5 ~viKv~~--gd-~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~-DL~~a~~q~l~ 80 (575)
+.|.|+. ++ +-++|.+.+.. +....+|..+|++.++++++ ...|.|.. -.|.|++ -|.+.-.+...
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~g-----k~L~D~~~tL~~ygI~~g~ 77 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNP----DFELSNFRVLCELESGVPAE-EAQIVYME-----QLLTDDHCSLGSYGLKDGD 77 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECT----TCBHHHHHHHHHHHTCCCGG-GBCEEETT-----EEECCSSSBHHHHTCCTTE
T ss_pred EEEEEEECCCCcCceEEEEEcCC----CCCHHHHHHHHHHHHCcChH-HeEEEECC-----EECCCCcccHHHCCCCCCC
Confidence 4455555 43 23788888753 45678899999999999975 66677754 2566664 47764334444
Q ss_pred eEEE
Q 008160 81 FLRI 84 (575)
Q Consensus 81 ~Lri 84 (575)
.|.|
T Consensus 78 ~l~l 81 (102)
T 1v5o_A 78 MVVL 81 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 3333
No 37
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=52.26 E-value=9.7 Score=31.53 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=24.3
Q ss_pred ceEEeccCC---CCccchhhhhcC-CCcccEEEEeC
Q 008160 393 PRFKSKVKD---DYDLCSICFAAM-GSEADYIRIDR 424 (575)
Q Consensus 393 ~RYKCsvC~---DyDLC~~C~~~~-~n~H~f~rI~~ 424 (575)
+-|+|..|. .+-||..||... |..|.|..+..
T Consensus 16 ~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s 51 (75)
T 3ny3_A 16 PTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTS 51 (75)
T ss_dssp EEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEEC
T ss_pred EEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEc
Confidence 458888884 356899999986 56799887654
No 38
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.46 E-value=70 Score=25.24 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=46.9
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
.+.|+|+.-+. +.|.+.+.. +....+|..+|++..++++ +...|.|.. . .|.|+.-|.+.-.+....|.
T Consensus 7 ~m~i~Vk~~~g-~~~~~~v~~----~~tV~~lK~~i~~~~gi~~-~~qrL~~~G---k--~L~d~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 7 GIQVFVKNPDG-GSYAYAINP----NSFILGLKQQIEDQQGLPK-KQQQLEFQG---Q--VLQDWLGLGIYGIQDSDTLI 75 (87)
T ss_dssp SEEEEEEETTT-EEEEEEECS----SSBHHHHHHHHHHHTCCCT-TTEEEEETT---E--ECCSSSBHHHHTCCTTEEEE
T ss_pred CEEEEEEcCCC-CEEEEEeCC----CChHHHHHHHHHHHhCCCh-HHEEEEECC---E--EccCCCCHHHCCCCCCCEEE
Confidence 46677775321 455566542 4467889999999999986 466777853 2 46777777765344445455
Q ss_pred EEEE
Q 008160 84 IDVH 87 (575)
Q Consensus 84 itV~ 87 (575)
+.+.
T Consensus 76 l~~~ 79 (87)
T 1wh3_A 76 LSKK 79 (87)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5553
No 39
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=51.41 E-value=16 Score=28.61 Aligned_cols=78 Identities=26% Similarity=0.279 Sum_probs=49.0
Q ss_pred cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
+++.|+|+.-+- +.|.+.++. +....+|..+|++.++++++ ...|.|.. -.|.|+.-|.+.-.+....|
T Consensus 2 s~m~i~vk~~~g-~~~~~~v~~----~~tV~~lK~~i~~~~~i~~~-~qrL~~~g-----~~L~d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 2 SHMQIFVKTLTG-KTITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFAG-----KQLEDGRTLSDYNIQKWSTL 70 (85)
T ss_dssp -CEEEEEECTTS-CEEEEEECT----TCBHHHHHHHHHHHHCCCGG-GCEEEETT-----EECCTTSBTGGGTCCTTCEE
T ss_pred CeEEEEEEcCCC-CEEEEEECC----CCCHHHHHHHHHHHHCcChH-HEEEEECC-----EECCCCCCHHHcCCCCCCEE
Confidence 456778886432 445666542 45688899999999999975 66777844 24666666665323444556
Q ss_pred EEEEEecCC
Q 008160 83 RIDVHLNND 91 (575)
Q Consensus 83 ritV~l~~~ 91 (575)
.+.+.+.+.
T Consensus 71 ~l~~r~~GG 79 (85)
T 3mtn_B 71 FLLLRLRGG 79 (85)
T ss_dssp EEECCCCCC
T ss_pred EEEEECcCC
Confidence 666544443
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=51.29 E-value=49 Score=27.72 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=47.0
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
.+.|+|+..+. +|.+.+.. +....+|..+|++.+++++ +...|.|. |- .|.|+.-|.+.-.+....|.
T Consensus 22 ~m~I~Vk~~~g--~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~QrLi~~---Gk--~L~D~~tL~~ygI~~gstI~ 89 (100)
T 1yqb_A 22 LIKVTVKTPKD--KEDFSVTD----TCTIQQLKEEISQRFKAHP-DQLVLIFA---GK--ILKDPDSLAQCGVRDGLTVH 89 (100)
T ss_dssp EEEEEEECSSC--EEEEEEET----TCBHHHHHHHHHHHHTCCG-GGEEEEET---TE--ECCTTSBHHHHTCCTTCEEE
T ss_pred eEEEEEEcCCC--cEEEEECC----CCcHHHHHHHHHHHHCcCh-hhEEEEEC---CE--ECCCcCcHHHCCCCCCCEEE
Confidence 46677776554 36777642 4567789999999999986 47777785 42 46677677765344445455
Q ss_pred EEE
Q 008160 84 IDV 86 (575)
Q Consensus 84 itV 86 (575)
+.+
T Consensus 90 l~~ 92 (100)
T 1yqb_A 90 LVI 92 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 41
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=48.36 E-value=70 Score=27.25 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=51.4
Q ss_pred cceEEEEEeCC---------ceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 3 STMVIKVKYGD---------TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 3 ~~~viKv~~gd---------~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
+.+.|+|+.-+ +-+.|.+.+.. +.....|..+|+...+++++ ...|.|. |- .|.|+.-|.+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~QrL~~~---Gk--~L~D~~tL~~ 93 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPL----TDQVSVIKVKIHEATGMPAG-KQKLQYE---GI--FIKDSNSLAY 93 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECS----CSBTHHHHHHHHHHSSCCTT-TEEEEET---TE--EECTTSBHHH
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECC----CCCHHHHHHHHHHHHCCChH-HEEEEEC---CE--ECCCCCCHHH
Confidence 35778888754 23566666642 44567799999999999964 6777784 43 4677777776
Q ss_pred HHHhcCceEEEEEEec
Q 008160 74 VMRQRLKFLRIDVHLN 89 (575)
Q Consensus 74 a~~q~l~~LritV~l~ 89 (575)
.-.+....|.+.+.+.
T Consensus 94 y~i~~g~~i~lv~rl~ 109 (115)
T 1we7_A 94 YNMASGAVIHLALKER 109 (115)
T ss_dssp HTCCSSCEEEEEECCC
T ss_pred CCCCCCCEEEEEEEcC
Confidence 5445555566665443
No 42
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=48.19 E-value=50 Score=25.69 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=48.1
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCc
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~ 80 (575)
|+. +.|+|+--+. +.|.+.++. +-....|..+|+...+++++ ...|.| +|. .|.|+.-|.+.=.+...
T Consensus 1 m~~-m~i~vk~~~g-~~~~~~v~~----~~tv~~lk~~i~~~~gi~~~-~qrL~~---~G~--~L~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 1 MEY-IKLKVIGQDS-SEIHFKVKM----TTHLKKLKESYCQRQGVPMN-SLRFLF---EGQ--RIADNHTPKELGMEEED 68 (79)
T ss_dssp CCE-EEEEEECTTC-CEEEEEEET----TSCTHHHHHHHHHHHTCCGG-GEEEEE---TTE--ECCTTCCHHHHTCCTTE
T ss_pred CCe-EEEEEECCCC-CEEEEEECC----CChHHHHHHHHHHHHCCCcc-cEEEEE---CCE--EeCCCCCHHHcCCCCCC
Confidence 665 7788884322 344455432 34567799999999999975 788888 464 45677667664344455
Q ss_pred eEEEEE
Q 008160 81 FLRIDV 86 (575)
Q Consensus 81 ~LritV 86 (575)
.|.+.+
T Consensus 69 ~i~l~~ 74 (79)
T 2uyz_B 69 VIEVYQ 74 (79)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555554
No 43
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=47.77 E-value=38 Score=30.50 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=40.9
Q ss_pred ceEEEe-cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCC
Q 008160 463 HILRDR-GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKF 538 (575)
Q Consensus 463 KtWrvr-Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~F 538 (575)
+.|++. +.- .+..+.|+-... +-| -|+|||+...+=--.-+...|.-.+++.|.+++|..|
T Consensus 50 RhW~Itd~~g-------~~~eV~G~GVVG------~qP--~L~PGe~f~YtSg~~L~tp~G~M~G~y~m~~~~G~~F 111 (127)
T 2f1e_A 50 RHWQITDGNG-------RTEQVDGEGVVG------EQP--WLRPGEAFHYTSGVLLETEQGQMQGHYDMVADDGTEF 111 (127)
T ss_dssp EEEEEEETTS-------CEEEEEESSBTT------BCC--EECTTCEEEEEEEEEESSSCEEEEEEEEEEETTCCEE
T ss_pred ceEEEEeCCC-------CEEEEECCCeec------CCC--cCCCCCceEEeCCcCcCCCcEEEEEEEEEEECCCCEE
Confidence 789988 433 134566654321 123 4999999888764333344799999999999887655
No 44
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=47.74 E-value=12 Score=30.68 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCCCCceEEEEecCCCCeEEE
Q 008160 35 LRAKIKSLFNFPHDSDLTLTYVDEDGDIVTL 65 (575)
Q Consensus 35 L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl 65 (575)
+..-|++.|.|..+++|.+++-|.||++|..
T Consensus 29 IPaeI~kaLgIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 29 IPKDIAEALDIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp ECHHHHHHTTCCTTCCEEEEEEEETTEEEEE
T ss_pred CcHHHHHHhCCCCCCEEEEEEecCCCeEEEE
Confidence 3667899999999999999999999988753
No 45
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.19 E-value=94 Score=25.08 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=44.1
Q ss_pred CCcceEEEEEeCCceeeeeeccCCC-CCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCch-hHHHH
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDEN-EKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD-DLCDV 74 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n-~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~-DL~~a 74 (575)
++..+.|+|++++ ++|.+.+..+ ++.+....+|..+|++..+++++ ...|.|. |- .|.|++ -|.+.
T Consensus 4 ~~~~~~v~Vk~~~--~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~-~qrL~~~---Gk--~L~D~~~~L~~~ 71 (92)
T 1wxv_A 4 GSSGLTVTVTHSN--EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQS-FQKLIFK---GK--SLKEMETPLSAL 71 (92)
T ss_dssp CCSSEEEEEECSS--SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTT-TCEEEET---TE--EECCSSSBHHHH
T ss_pred CCCeEEEEEEECC--EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHH-HEEEEEC---Ce--ecCCCcccHHHC
Confidence 4566889999864 5666766531 11235678899999999999975 6667786 32 356644 47654
No 46
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=47.09 E-value=12 Score=38.50 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=28.6
Q ss_pred ccCceecCCCCCCCccc---ceEEeccCCCCccchhhhhcC
Q 008160 376 FHKGVRCDGCGVHPITG---PRFKSKVKDDYDLCSICFAAM 413 (575)
Q Consensus 376 vH~GV~CDgC~~~PI~G---~RYKCsvC~DyDLC~~C~~~~ 413 (575)
.+....|+.|+. .+.| .+|+|..| .+..|..|....
T Consensus 354 ~~~~t~C~~C~~-~~~g~~~qg~~C~~C-~~~~h~~C~~~~ 392 (406)
T 2vrw_B 354 FEETTSCKACQM-LLRGTFYQGYRCYRC-RAPAHKECLGRV 392 (406)
T ss_dssp CSSCCBCTTTCC-BCCSSSSCEEEETTT-CCEECGGGGGGS
T ss_pred CCCCCCCccccc-hhceeCCCCCCCCCC-cCccchhhhhhC
Confidence 345588999996 4666 78999999 688999998753
No 47
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=46.67 E-value=9.1 Score=31.39 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=31.9
Q ss_pred ecCCCCCCCcccceEEeccCCCCccchhhhhcCC-----CcccEEEEeCCc
Q 008160 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG-----SEADYIRIDRPV 426 (575)
Q Consensus 381 ~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~-----n~H~f~rI~~P~ 426 (575)
-|-.|... .-+||.-|.+-=+|..||..+| ..|...++..|.
T Consensus 10 WC~ICneD----AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~~~ 56 (67)
T 2d8v_A 10 WCCICNED----ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRR 56 (67)
T ss_dssp SCTTTCSC----CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCCSS
T ss_pred eeEEeCCC----CeEEecCCCCceehHHHHHHHccchhhhccceeeccCCC
Confidence 47778854 4499999987666999999876 368887776664
No 48
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=46.63 E-value=36 Score=30.68 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=41.1
Q ss_pred ceEEEe-cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCC
Q 008160 463 HILRDR-GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKF 538 (575)
Q Consensus 463 KtWrvr-Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~F 538 (575)
+.|++. +.- .+..+.|+-... +-| -|+|||+...+=--.-+...|.-.+++.|.+++|..|
T Consensus 49 RhW~Itd~~g-------~~~eV~G~GVVG------~qP--~L~PGe~f~YtSg~~L~tp~G~M~G~y~m~~~~G~~F 110 (126)
T 1xvs_A 49 RRWLITDADG-------KQTVVEGDGVVG------EQP--RIKANDEYTYSSGTALDTPVGVMQGQYLMIDEQGESF 110 (126)
T ss_dssp EEEEEEETTC-------CEEEEEEESBTT------BCC--EECTTCEEEEEEEEEESSSEEEEEEEEEEECTTSCEE
T ss_pred cEEEEEeCCC-------CEEEEECCceEc------CCC--cCCCCCceEEeCCcCcCCCcEEEEEEEEEEECCCCEE
Confidence 789998 433 134566654322 123 4999999888764333344799999999999888655
No 49
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.99 E-value=12 Score=32.26 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCC
Q 008160 501 DGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSG 535 (575)
Q Consensus 501 ~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G 535 (575)
..|+|||++.|.|.|. |...|.|...-.+...+|
T Consensus 74 g~L~pg~~~~i~V~F~-P~~~g~~~~~l~v~~~~g 107 (122)
T 2ys4_A 74 GTLNVGESMQLEVEFE-PQSVGDHSGRLIVCYDTG 107 (122)
T ss_dssp EEECTTCEEEEEEEEC-CSSSBCCCCBCEEEESSS
T ss_pred CEECCCCEEEEEEEEE-cCCCccEEEEEEEEECCC
Confidence 3589999999999998 889999999888876555
No 50
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.79 E-value=34 Score=37.68 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=52.5
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHH
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLC 72 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~ 72 (575)
|--.+.+||.|-|..-.|.+.. .-...+|..+|.+-++|...+-|.|.|.|.+|...-|+.+.-|.
T Consensus 1 ~~k~i~v~V~llDgt~e~~vd~------~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~ 66 (575)
T 2i1j_A 1 MPKSMNVRVTTMDAELEFAIQQ------TTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVM 66 (575)
T ss_dssp --CEEEEEEECSSCEEEEEEET------TCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGG
T ss_pred CCceEEEEEEeCCCeEEEEECC------CCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHH
Confidence 5567899999988755566663 33577899999999999988899999999999988887766554
No 51
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.42 E-value=27 Score=28.54 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=44.3
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
.+.|+|+..+ +.|.+.+.. +....+|..+|++.++++++ ...|.|. |- .|.|+.-|.+.-.+....|.
T Consensus 17 ~m~i~Vk~~g--~~~~~~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~---Gk--~L~D~~tL~~~gi~~g~~i~ 84 (96)
T 1wx8_A 17 IIRVSVKTPQ--DCHEFFLAE----NSNVRRFKKQISKYLHCNAD-RLVLIFT---GK--ILRDQDILSQRGILDGSTVH 84 (96)
T ss_dssp EEEEEEECSS--SEEEEEEET----TCCHHHHHHHHHHHTCSCTT-TBCCEET---TE--ECCTTSCHHHHTCCTTEEEE
T ss_pred cEEEEEEECC--eEEEEEECC----CCCHHHHHHHHHHHhCCCHH-HEEEEEC---CE--ECCCcCCHHHCCCCCCCEEE
Confidence 4667777753 455666542 45678899999999999975 5666675 32 46676677764334444343
Q ss_pred E
Q 008160 84 I 84 (575)
Q Consensus 84 i 84 (575)
+
T Consensus 85 l 85 (96)
T 1wx8_A 85 V 85 (96)
T ss_dssp C
T ss_pred E
Confidence 3
No 52
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.09 E-value=48 Score=27.43 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=39.9
Q ss_pred cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
..+.|+|++++ +.|.+.+.. +....+|..+|++..+++++.. .|.|... . | ||..|.+.
T Consensus 16 ~~~~i~Vk~~g--~~~~i~v~~----~~TV~~LK~~I~~~tgip~~~Q-rL~~~Gk---~--L-dd~tL~~~ 74 (95)
T 1v86_A 16 ELVDLKIIWNK--TKHDVKVPL----DSTGSELKQKIHSITGLPPAMQ-KVMYKGL---V--P-EDKTLREI 74 (95)
T ss_dssp CCEEEEEEETT--EEEEEEECT----TSBHHHHHHHHHHHHCSCSTTC-CCBSSSB---C--C-SSSBHHHH
T ss_pred ceEEEEEEECC--EEEEEEECC----CCcHHHHHHHHHHHHCcCHHHe-EEEECCe---e--C-CcCcHHHC
Confidence 34778888876 456666642 4567889999999999998644 4457542 2 4 45566653
No 53
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=43.35 E-value=47 Score=30.04 Aligned_cols=56 Identities=25% Similarity=0.231 Sum_probs=39.5
Q ss_pred EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
-+||.=.+..+|+-|-.. . +..|+.|.+..|+|. ..+. =+.+||| |..||+|....
T Consensus 37 PfKV~~~~Rs~k~GV~A~-----S--L~EL~~K~~~~l~l~--~~~~-lvLeeDG---T~VddEeYF~t 92 (122)
T 1d4b_A 37 PFRVCDHKRTIRKGLTAA-----T--RQELLAKALETLLLN--GVLT-LVLEEDG---TAVDSEDFFQL 92 (122)
T ss_dssp EEEEECSSSSCEEEEEEC-----C--SSTHHHHHHHHHSCC--SSCE-EEETTTT---EEECSTHHHHH
T ss_pred CEEEecCCCCeEEeEEcC-----C--HHHHHHHHHHHhccC--CCcE-EEEEeCC---cEEechhHhhc
Confidence 367887777788877754 4 444999999999993 3333 4667899 55567777654
No 54
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.09 E-value=38 Score=29.78 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=46.0
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
.+.|+|+.. -+.|.+.+.. +....+|..+|++.+++++ +...|.|. |- .|.|+.-|.+.-.+....|.
T Consensus 32 ~m~I~Vk~~--g~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~QrLi~~---Gk--~L~D~~tL~dygI~~gstI~ 99 (125)
T 1j8c_A 32 IIKVTVKTP--KEKEEFAVPE----NSSVQQFKEAISKRFKSQT-DQLVLIFA---GK--ILKDQDTLIQHGIHDGLTVH 99 (125)
T ss_dssp CEEEEEECS--SCEEEEEECT----TCCHHHHHHHHHHHHCSCS-SSEEEEET---TE--EESTTSCGGGTTCSSSEEEE
T ss_pred cEEEEEEeC--CeEEEEEECC----CCcHHHHHHHHHHHHCcCc-ceEEEEEC---CE--EcCCCCCHHHcCCCCCCEEE
Confidence 466777775 3456777642 4567889999999999996 46777785 32 45666666653233444454
Q ss_pred EEE
Q 008160 84 IDV 86 (575)
Q Consensus 84 itV 86 (575)
+.+
T Consensus 100 lv~ 102 (125)
T 1j8c_A 100 LVI 102 (125)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 55
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=42.37 E-value=23 Score=27.84 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=47.7
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
++.|+|+.-+ -+.|.+.+.. +....+|..+|++.+++++ +...|.|... .|.|+..|.+.-.+....|.
T Consensus 3 ~m~i~vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~~ip~-~~qrL~~~g~-----~L~d~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 3 HMRIVVKTLM-GRTIILEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLSDYNIHNHSALY 71 (85)
T ss_dssp -CEEEEECGG-GCEEEEECCT----TCBHHHHHHHHHHHHCCCG-GGEEEEETBE-----ECCTTCBTTTTTCCTTCEEE
T ss_pred eEEEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHHHHCCCH-HHEEEEECCe-----ECCCCCCHHHCCCCCCCEEE
Confidence 4567777532 2346666642 5567889999999999997 4678888542 46666666654234445566
Q ss_pred EEEEecC
Q 008160 84 IDVHLNN 90 (575)
Q Consensus 84 itV~l~~ 90 (575)
+.+.+.+
T Consensus 72 l~~rl~G 78 (85)
T 3n3k_B 72 LLLKLRG 78 (85)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 6665443
No 56
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=40.43 E-value=1.2e+02 Score=25.08 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=46.6
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCc-hhHHHHHHhcCceEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDD-DDLCDVMRQRLKFLR 83 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd-~DL~~a~~q~l~~Lr 83 (575)
+.|.||..+. .|.+.+.. +.....|..+|++..+++++ ...|.|.. -.|.|+ .-|.+.-.+....|.
T Consensus 16 ~~I~Vk~~~~--~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~QrLi~~G-----k~L~D~~~tL~~ygI~~gstl~ 83 (94)
T 2kan_A 16 IHVTVKFPSK--QFTVEVDR----TETVSSLKDKIHIVENTPIK-RMQLYYSG-----IELADDYRNLNEYGITEFSEIV 83 (94)
T ss_dssp EEEEEECSSC--EEEEEECT----TCBHHHHHHHHHHHSSSCTT-TEEEEETT-----EEECCTTSBHHHHTCCTTEEEE
T ss_pred EEEEEEcCCc--EEEEEECC----CCcHHHHHHHHHHHHCcCHH-HEEEEECC-----EECCCCcccHHHCCCCCCCEEE
Confidence 5566665544 56777653 44677899999999999865 66677753 246777 667765344455555
Q ss_pred EEEE
Q 008160 84 IDVH 87 (575)
Q Consensus 84 itV~ 87 (575)
+.+.
T Consensus 84 lv~r 87 (94)
T 2kan_A 84 VFLK 87 (94)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5553
No 57
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=40.06 E-value=39 Score=30.77 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=41.4
Q ss_pred ceEEEe-cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCC
Q 008160 463 HILRDR-GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKF 538 (575)
Q Consensus 463 KtWrvr-Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~F 538 (575)
+.|++. +.- .+..|.|+-... +-| -|.|||....+=--.-+...|.-.+++.|.+++|..|
T Consensus 49 RhW~Itd~~g-------~~~eV~G~GVVG------eqP--~L~PGe~F~YtSg~~L~Tp~G~M~G~y~m~~~~G~~F 110 (134)
T 1tza_A 49 RHWIITDANG-------KTSEVQGAGVVG------ETP--TIPPNTAYQYTSGTVLDTPFGIMYGTYGMVSESGEHF 110 (134)
T ss_dssp EEEEEEETTS-------CEEEEEEESBTT------BCC--EECTTEEEEEEEEEEESSSEEEEEEEEEEEETTCCEE
T ss_pred cEEEEEeCCC-------CEEEEEcCceEc------CCC--cCCCCCceEEcCCcCcCCCceEEEEEEEEEECCCCEE
Confidence 789988 433 134566654322 123 4999998888764434445899999999999887655
No 58
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.36 E-value=54 Score=27.13 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCCCCeEEEEEEEe
Q 008160 501 DGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVL 549 (575)
Q Consensus 501 ~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~FG~~lWv~I~V~ 549 (575)
..++||++.+|.|.|. |..+|.|.....+.. +|..--..|.+.=.|.
T Consensus 64 g~i~pg~~~~i~V~f~-~~~~g~f~~~i~v~~-~g~~~~~~L~i~G~vv 110 (112)
T 2e6j_A 64 GIIEPSGVQAIQISFS-SIILGNFEEEFLVNV-NGSPEPVKLTIRGCVI 110 (112)
T ss_dssp EEECTTBCCEEEEEEC-CCCCEEEEEEECEEE-SSCSSCCCEEEEEEEE
T ss_pred CEECCCCEEEEEEEEE-CCCcceEEEEEEEEE-CCCCceEEEEEEEEEE
Confidence 4599999999999999 478999988777665 3332224444443343
No 59
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=37.22 E-value=62 Score=29.65 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=41.2
Q ss_pred ceEEEe-cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCC
Q 008160 463 HILRDR-GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKF 538 (575)
Q Consensus 463 KtWrvr-Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~F 538 (575)
+.|++. +.- .+..|.|+-... +-| -|+|||....+=--.-+...|.-.+++.|.+++|..|
T Consensus 54 RhW~ItD~~G-------~~~eV~G~GVVG------eqP--vL~PGe~F~YtSg~~L~Tp~G~M~G~y~m~~~~G~~F 115 (139)
T 1xq4_A 54 RHWIITDGEE-------RVQEVRGLGVVG------QQP--LLAPGETFEYTSGCPLPTPIGTMRGTYHCVGENGIPF 115 (139)
T ss_dssp EEEEEECTTS-------CEEEEEEESSSS------CCC--EECTTCEEEEEEEEEESSSEEEEEEEEEEEETTSCEE
T ss_pred cEEEEEeCCC-------CEEEEECCCeec------CCC--cCCCCCceEEcCCcCcCCCceEEEEEEEEEeCCCCEE
Confidence 789888 433 234566654322 123 4999999888764333444799999999999887655
No 60
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.00 E-value=1.6e+02 Score=23.27 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=46.2
Q ss_pred ceEEEEEeCCceeeeee-ccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 4 TMVIKVKYGDTLRRFNA-RVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~-~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
.+.|+|+.-+--+.|.+ .+.. +....+|..+|++..+++++ ...|.|. |- .|.|+.-|.+.-.+....|
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~----~~tV~~lK~~i~~~~gip~~-~qrL~~~---gk--~L~d~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSR----KATIEELRERVWALFDVRPE-CQRLFYR---GK--QLENGYTLFDYDVGLNDII 76 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECT----TCBHHHHHHHHHHHSCCCTT-TEEEEET---TE--ECCSSSBHHHHTCCTTCEE
T ss_pred cEEEEEEECCCCceEEEEecCC----CCCHHHHHHHHHHHHCcChh-hEEEEEC---Ce--ECCCCCCHHHCCCCCCCEE
Confidence 35566665222234555 2542 44577899999999999864 6777784 32 4667777776534444556
Q ss_pred EEEEEe
Q 008160 83 RIDVHL 88 (575)
Q Consensus 83 ritV~l 88 (575)
.+.+.+
T Consensus 77 ~l~~~~ 82 (89)
T 1wy8_A 77 QLLVRP 82 (89)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 665543
No 61
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.44 E-value=70 Score=26.60 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.9
Q ss_pred ceEEEEEeCCceeee-eeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEE
Q 008160 4 TMVIKVKYGDTLRRF-NARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTY 55 (575)
Q Consensus 4 ~~viKv~~gd~lRRf-~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y 55 (575)
.+.|+|++++ +.| .+.+.. +-...+|..+|++..+++++..-+| |
T Consensus 7 ~m~i~Vk~~g--~~~~~l~v~~----~~TV~~lK~~I~~~tgip~~~QkLi-~ 52 (96)
T 1wgg_A 7 GYSVTVKWGK--EKFEGVELNT----DEPPMVFKAQLFALTGVQPARQKVM-V 52 (96)
T ss_dssp EEEEEEEETT--EEEEEEEEES----SSCHHHHHHHHHHHTCCCTTTSCCE-E
T ss_pred EEEEEEEECC--EEEEEEEECC----CCcHHHHHHHHHHHHCcCHHHeEEE-E
Confidence 4778899876 667 477653 4467889999999999998755544 6
No 62
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=34.80 E-value=59 Score=28.46 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=38.7
Q ss_pred EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHH
Q 008160 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLC 72 (575)
Q Consensus 6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~ 72 (575)
-+||.=..+-+|+-|-.. ++..|+.|.+..|+|+.+...+-=+.+|||-.| |++|..
T Consensus 20 PfkV~~~~~r~k~GV~A~-------SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~V---ddEeYF 76 (100)
T 1f2r_I 20 PCLLRRNHSRDQHGVAAS-------SLEELRSKACELLAIDKSLTPITLVLAEDGTIV---DDDDYF 76 (100)
T ss_dssp EEEEEETTEEEEEEEEES-------SHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBC---CSSSSS
T ss_pred CEEEeeCCCccEEeEEcC-------CHHHHHHHHHHHhccCCCCCceEEEEeeCCcEE---echhHh
Confidence 478885555557777753 477799999999999864333334667889554 455554
No 63
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=34.73 E-value=26 Score=28.65 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=36.8
Q ss_pred CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEe
Q 008160 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYV 56 (575)
Q Consensus 1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~ 56 (575)
|+..++|+++--+-..|+.+.- +=++.+|..+|++.|+++. +.+.|+|.
T Consensus 1 ~~~~m~lRvrs~~G~~Ri~v~~------~~t~~~L~~~I~~~~~i~~-~~~~l~~~ 49 (80)
T 2pjh_A 1 MAESIIIRVQSPDGVKRITATK------RETAATFLKKVAKEFGFQN-NGFSVYIN 49 (80)
T ss_dssp -CCCCCCEEECSSEEEECCCCS------SCCHHHHHHHHHHHTCCCT-TTCCCCCS
T ss_pred CCCcEEEEEECCCCCEEEEcCC------cChHHHHHHHHHHHcCCCC-CcceEEec
Confidence 7777899999998899988652 2267889999999999875 44445443
No 64
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.32 E-value=1.3e+02 Score=25.21 Aligned_cols=77 Identities=21% Similarity=0.161 Sum_probs=46.5
Q ss_pred eEEEEEeCCc--eeeeeeccCC----CCCc-ccCHHHHHHHHHHHh--CCCCCCceEEEEecCCCCeEEEcCchhHHHHH
Q 008160 5 MVIKVKYGDT--LRRFNARVDE----NEKL-DLDIDGLRAKIKSLF--NFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (575)
Q Consensus 5 ~viKv~~gd~--lRRf~~~~~~----n~~~-dl~~~~L~~ki~~~F--~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~ 75 (575)
+.|+||..+. .+.|.+.+.. +-+. +.....|..+|++.. +++++.-..|-|.. - .|.|+.-|.+.-
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~G---k--~L~D~~tL~~y~ 87 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCG---R--KLKDDQTLDFYG 87 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETT---E--ECCTTCBHHHHT
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECC---e--ECCCCCcHHHcC
Confidence 5566666544 4677777542 0112 256788999999999 99976416666753 2 456766777643
Q ss_pred HhcCceEEEEE
Q 008160 76 RQRLKFLRIDV 86 (575)
Q Consensus 76 ~q~l~~LritV 86 (575)
.+....|.+.+
T Consensus 88 i~~g~~i~lv~ 98 (107)
T 1x1m_A 88 IQPGSTVHVLR 98 (107)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 34444444433
No 65
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.75 E-value=53 Score=25.41 Aligned_cols=58 Identities=28% Similarity=0.392 Sum_probs=38.2
Q ss_pred ceEEEEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 4 TMVIKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 4 ~~viKv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
.+.|+|+. ++ +.|.+.+.. +....+|..+|++.++++++ ...|.|. |- .|.|+.-|.+
T Consensus 7 ~m~i~vk~~~g--~~~~~~v~~----~~tV~~LK~~i~~~~~i~~~-~qrL~~~---gk--~L~d~~tL~~ 65 (81)
T 2dzi_A 7 GMQLTVKALQG--RECSLQVPE----DELVSTLKQLVSEKLNVPVR-QQRLLFK---GK--ALADGKRLSD 65 (81)
T ss_dssp SEEEEEEETTS--CEEEEEECS----SCBHHHHHHHHHHHTCCCTT-TCEEEET---TE--ECCTTSBGGG
T ss_pred cEEEEEEeCCC--CEEEEEECC----CCcHHHHHHHHHHHHCcCHH-HEEEEEC---Ce--ECCCCCcHHH
Confidence 35566664 33 456666642 45678899999999999975 6777784 33 3556555554
No 66
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=33.65 E-value=55 Score=26.44 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=46.4
Q ss_pred EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEE
Q 008160 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID 85 (575)
Q Consensus 6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lrit 85 (575)
-|+|+.-+ -+.|.+.+.. +....+|..+|++.++++++ ...|.|... .|.|+..|.+.-.+....|.+.
T Consensus 3 ~i~vk~~~-g~~~~~~v~~----~~TV~~LK~~i~~~~gip~~-~qrL~~~G~-----~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 3 QIFVKTLT-GKTITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFAGK-----QLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp EEEEEETT-CCEEEEECCT----TCBHHHHHHHHHHHHCCCGG-GEEEEETTE-----ECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCC-CCEEEEEECC----CCCHHHHHHHHHhhhCCChh-HEEEEECCE-----ECCCCCcHHHcCCCCCCEEEEE
Confidence 35555432 1345566542 55678899999999999874 677778432 4667766765423444556666
Q ss_pred EEecCC
Q 008160 86 VHLNND 91 (575)
Q Consensus 86 V~l~~~ 91 (575)
+.+.+.
T Consensus 72 ~r~~gG 77 (96)
T 3k9o_B 72 LRLRGY 77 (96)
T ss_dssp ECCCC-
T ss_pred EEcCCC
Confidence 655443
No 67
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=33.38 E-value=55 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.0
Q ss_pred CCCCCCEEEEEEEeeCCCCCCeEeeEEEeECC
Q 008160 502 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSP 533 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp 533 (575)
.+.||++.. +.|++|.+||. ||=.|++
T Consensus 65 ~i~pG~~~~--~~f~~~~~~G~---y~y~C~~ 91 (105)
T 3cvb_A 65 MFSPGESYE--ITFSSDFPAGT---YTYYCAP 91 (105)
T ss_dssp ECSTTCEEE--EEECTTSCSEE---EEEECTT
T ss_pred ccCCCCeEE--EEEecCCCCee---EEEEeCC
Confidence 488999875 47889989998 5767773
No 68
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=33.07 E-value=75 Score=25.72 Aligned_cols=62 Identities=21% Similarity=0.152 Sum_probs=40.8
Q ss_pred eeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEEE
Q 008160 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (575)
Q Consensus 16 RRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~LritV 86 (575)
+.|.+.+.. +-...+|..+|++..++++ +...|.|.. - +.|.|+.-|.+.-.+....|.+.+
T Consensus 21 ~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~QrLi~~G---k-~lL~D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 21 SSFELEVDY----RDTLLVVKQKIERSQHIPV-SKQTLIVDG---I-VILREDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CEEEEEECT----TSBHHHHHHHHHHHHTCCG-GGEEEEETT---E-ECCCSSSBHHHHTCCTTSCEEEEE
T ss_pred cEEEEEECC----CChHHHHHHHHHHHHCcCh-HHEEEEECC---E-EecCCcCCHHHcCCCCCCEEEEEE
Confidence 556666642 4467889999999999986 467777853 2 126777777765344445455543
No 69
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=32.87 E-value=22 Score=28.94 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=24.4
Q ss_pred ceecCCCCCCCcccceEEeccCCCCccchhhhhc
Q 008160 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 379 GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~ 412 (575)
.+.||.|...+-.-.--.|..|..+ ||+.|...
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s-~C~~hl~~ 62 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 62 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CccCCcCCCCCCCCCeeEccCccch-hhhhhhHh
Confidence 4789999854423344579999765 99999986
No 70
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=32.86 E-value=32 Score=29.57 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=24.6
Q ss_pred CEEEEEEEeeCCCCCCeEeeEEEeECCCCCC
Q 008160 507 GEIDIAVDFTAPELPGRYISYWRMSSPSGVK 537 (575)
Q Consensus 507 EevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~ 537 (575)
..-.+.|.+. |-.+|.|.=.||..+.||..
T Consensus 65 ~~~~~~~~l~-~L~~G~YtV~WrvvS~DGH~ 94 (104)
T 1lyq_A 65 PKSMVIIPRE-PLPAGTYRVDWRAVSSDTHP 94 (104)
T ss_dssp TTEEEEEESS-CCCSEEEEEEEEECCTTSCC
T ss_pred CCcEEEEECC-CCCCceEEEEEEEEecCCCc
Confidence 3456677776 78899999999999999965
No 71
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=32.62 E-value=35 Score=29.21 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.8
Q ss_pred CCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCC
Q 008160 504 PVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVK 537 (575)
Q Consensus 504 ~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~ 537 (575)
.++..-.+.+.+. |-.+|.|.=.||..+.||..
T Consensus 60 ~~~~~~~~~~~l~-~L~~G~YtV~WrvvS~DGH~ 92 (102)
T 2c9r_A 60 GGDPKTMVITPAS-PLTAGTYKVDWRAVSSDTFP 92 (102)
T ss_dssp CSSTTEEEEEESS-CCCSEEEEEEEEECCTTCCC
T ss_pred cCCCCcEEEEECC-CCCCceEEEEEEEEecCCCc
Confidence 3334556777774 78899999999999999965
No 72
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=32.34 E-value=80 Score=25.85 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=45.6
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
+.|+|+.| +.|.+.+.. +-...+|..+|++..+++++ ...|.|. |- .|.|+.-|.+.-.+....|.+
T Consensus 20 m~I~Vk~g---~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~---Gk--~L~D~~tL~~y~I~~gstI~l 86 (93)
T 2l7r_A 20 MQLFVRAQ---ELHTFEVTG----QETVAQIKAHVASLEGIAPE-DQVVLLA---GA--PLEDEATLGQCGVEALTTLEV 86 (93)
T ss_dssp CEEEEESS---SEEEEECCS----SCBHHHHHHHHHHHHTCCGG-GCEEEET---TE--ECCTTSBHHHHTCCSSCEEEE
T ss_pred EEEEEECC---CEEEEEeCC----CCcHHHHHHHHHHHhCcChh-HEEEEEC---CE--ECCCCCcHHHCCCCCCCEEEE
Confidence 56777773 455666642 44678899999999999864 6677785 32 467776777653444554555
Q ss_pred EE
Q 008160 85 DV 86 (575)
Q Consensus 85 tV 86 (575)
.+
T Consensus 87 v~ 88 (93)
T 2l7r_A 87 AG 88 (93)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 73
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=32.07 E-value=31 Score=29.18 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=18.2
Q ss_pred hCCCCCCceEEEEecCCCCeEEEcCch
Q 008160 43 FNFPHDSDLTLTYVDEDGDIVTLVDDD 69 (575)
Q Consensus 43 F~l~~d~~~~l~Y~DeDGD~Vtl~dd~ 69 (575)
|.|.....++++|.||+|.- |+++.
T Consensus 1 ~~~~k~~~VtV~YvDe~Gn~--La~~~ 25 (85)
T 2kvz_A 1 MDFGKPNQVTVNYLDENNTS--IAPSL 25 (85)
T ss_dssp CCSSCCCCEEEEEECSSSCE--EEEEE
T ss_pred CCcccCCeEEEEEECCCCCC--CCCCe
Confidence 34566788999999999974 44443
No 74
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=32.01 E-value=1.6e+02 Score=27.42 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=32.0
Q ss_pred ceEEEEEeCC----ceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCC
Q 008160 4 TMVIKVKYGD----TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPH 47 (575)
Q Consensus 4 ~~viKv~~gd----~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~ 47 (575)
.+.|||.+.+ .-||+.|+- ++++.+|-.-||.+|...-
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~------~~TL~~LH~vIq~afgw~~ 49 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPE------NYTFLDLHKAIQAVMDWED 49 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEET------TCBHHHHHHHHHHHTTCCC
T ss_pred EEEEEEEECCCCCCeEEEEEECC------CCCHHHHHHHHHHHhCCCC
Confidence 3789999995 589999993 6678889999999998763
No 75
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=30.62 E-value=71 Score=24.40 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=37.7
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
+.|.|+.++ +.|.+.+.. +....+|..+|++.+++++ ....|.|.. - .|.|+.-|.+
T Consensus 5 m~i~vk~~g--~~~~~~v~~----~~tV~~LK~~i~~~~~i~~-~~qrL~~~g---k--~L~d~~tL~~ 61 (77)
T 2bwf_A 5 LNIHIKSGQ--DKWEVNVAP----ESTVLQFKEAINKANGIPV-ANQRLIYSG---K--ILKDDQTVES 61 (77)
T ss_dssp EEEEEEETT--EEEEEEECT----TCBHHHHHHHHHHHHCCCG-GGEEEEETT---E--ECCTTSBTGG
T ss_pred EEEEEEECC--EEEEEEECC----CCcHHHHHHHHHHHhCCCH-HHEEEEECC---e--EcCCCCCHHH
Confidence 456666644 455666542 4467889999999999986 477777853 2 3556555554
No 76
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=30.41 E-value=74 Score=23.99 Aligned_cols=68 Identities=26% Similarity=0.338 Sum_probs=41.3
Q ss_pred EEEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEE
Q 008160 7 IKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID 85 (575)
Q Consensus 7 iKv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lrit 85 (575)
|+|+. ++ +.|.+.++. +....+|..+|++.+++++ ....|.|. |. .|.|+.-|.+.-.+....|.+.
T Consensus 3 i~vk~~~g--~~~~i~v~~----~~tv~~lK~~i~~~~~i~~-~~q~L~~~---g~--~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 3 IFVKTLTG--KTITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEETTS--CEEEEECCT----TCBHHHHHHHHHHHHCCCG-GGEEEEET---TE--ECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEcCCC--CEEEEEECC----CCcHHHHHHHHHHHHCcCH-HHeEEEEC---Ce--ECCCCCcHHHcCCCCCCEEEEE
Confidence 45554 33 344555542 4567889999999999986 47888884 32 3566655654323334445554
Q ss_pred E
Q 008160 86 V 86 (575)
Q Consensus 86 V 86 (575)
+
T Consensus 71 ~ 71 (76)
T 3a9j_A 71 L 71 (76)
T ss_dssp E
T ss_pred E
Confidence 4
No 77
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=28.72 E-value=48 Score=26.16 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=44.2
Q ss_pred ceEEEEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 4 TMVIKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 4 ~~viKv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
.+.|+|+. .+ +.|.+.+.. +....+|..+|++.++++++ ...|-|... .|.|+.-|.+.-.+....|
T Consensus 12 ~m~i~vk~~~g--~~~~~~v~~----~~tV~~lK~~i~~~~gip~~-~qrL~~~G~-----~L~d~~tL~~~~i~~~~~i 79 (88)
T 3dbh_I 12 SMLIKVKTLTG--KEIEIDIEP----TDKVERIKERVEEKEGIPPQ-QQRLIYSGK-----QMNDEKTAADYKILGGSVL 79 (88)
T ss_dssp CEEEEEECTTS--CEEEEEECT----TCBHHHHHHHHHHHHCCCGG-GCCEEETTE-----ECCTTSBGGGGTCCTTCEE
T ss_pred cEEEEEEcCCC--CEEEEEECC----CCCHHHHHHHHHHHHCcCHH-HEEEEECCe-----ECCCCCcHHHcCCCCCCEE
Confidence 46778885 44 345556542 45678899999999999964 567778432 4666666665323334434
Q ss_pred EEEE
Q 008160 83 RIDV 86 (575)
Q Consensus 83 ritV 86 (575)
.+.+
T Consensus 80 ~l~~ 83 (88)
T 3dbh_I 80 HLVL 83 (88)
T ss_dssp EECC
T ss_pred EEEE
Confidence 4433
No 78
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=28.71 E-value=80 Score=26.73 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=31.1
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEec
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVD 57 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~D 57 (575)
+.|+||--+-.-|+.+. + .+.+..+|..+|++.++++++.. .|.|..
T Consensus 8 M~irvrs~~G~~~v~v~---~--~~~Tv~~LK~kI~~~~gip~~~Q-rL~~~~ 54 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVD---G--PHITVSQLKTLIQDQLQIPIHNQ-TLSTNR 54 (107)
T ss_dssp EEEEEECSSCEEEEEEC---C--TTSBHHHHHHHHHHHSCCCTTTC-CCBSSG
T ss_pred EEEEEECCCCCEEEEEC---C--CCCcHHHHHHHHHHHhCcCcccC-EEEECC
Confidence 67888754444466554 0 24467889999999999997654 444433
No 79
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=28.59 E-value=1.1e+02 Score=25.42 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=44.2
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
+.|+|+..+ +.|.+.+.. +....+|..+|++.+++++ +...|.|. |- .|.|+.-|.+.-.+....|.+
T Consensus 26 m~I~Vk~~g--~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~qrLi~~---Gk--~L~D~~tL~~~gI~~g~~I~l 93 (101)
T 2klc_A 26 MKVTVKTPK--EKEEFAVPE----NSSVQQFKEEISKRFKSHT-DQLVLIFA---GK--ILKDQDTLSQHGIHDGLTVHL 93 (101)
T ss_dssp EEEEEECSS--CEEEEEECS----CCCHHHHHHHHHHHHTCCG-GGEEEEET---TE--EECTTCCTGGGTCCTTCEEEE
T ss_pred EEEEEEeCC--cEEEEEECC----CCCHHHHHHHHHHHHCcCh-hhEEEEEC---CE--ECCCcCcHHHcCCCCCCEEEE
Confidence 556666653 456666642 4567889999999999996 46777785 42 456665565432333444444
Q ss_pred EE
Q 008160 85 DV 86 (575)
Q Consensus 85 tV 86 (575)
.+
T Consensus 94 ~~ 95 (101)
T 2klc_A 94 VI 95 (101)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 80
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.69 E-value=1.4e+02 Score=25.65 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=49.5
Q ss_pred EEEEEeCCc---eeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 6 VIKVKYGDT---LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 6 viKv~~gd~---lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
+|+|+.-+. -++|.+.+. .+-....|..+|++-+.++++-.- |-|. |- .|.|+.-|.+.=.+....|
T Consensus 17 ti~V~~~~~~~~~~~~~lev~----~~~TV~~lK~kI~~k~gip~~qQr-LI~~---GK--iL~D~~TL~~y~I~~gsti 86 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETR----LHITGRELRSKIAETFGLQENYIK-IVIN---KK--QLQLGKTLEEQGVAHNVKA 86 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEE----SSSBHHHHHHHHHHHTTCCSTTCE-EEET---TE--ECCTTSBHHHHTCCSSEEE
T ss_pred EEEEEecCCCCCCcEEEEEeC----CcCHHHHHHHHHHHHHCcCHHHeE-EEeC---Ce--ECCCCCcHHHcCCCCCCEE
Confidence 566666551 378888875 345677899999999999976544 4476 43 4577777876534445545
Q ss_pred EEEEEecCCc
Q 008160 83 RIDVHLNNDK 92 (575)
Q Consensus 83 ritV~l~~~~ 92 (575)
+-+.+..+.
T Consensus 87 -~vl~lrg~~ 95 (100)
T 1wju_A 87 -MVLELKQSS 95 (100)
T ss_dssp -EEECCCCCC
T ss_pred -EEEEECCCC
Confidence 444455543
No 81
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=26.65 E-value=36 Score=36.91 Aligned_cols=37 Identities=14% Similarity=0.432 Sum_probs=29.1
Q ss_pred cccCceecCCCCCCCccc---ceEEeccCCCCccchhhhhcC
Q 008160 375 MFHKGVRCDGCGVHPITG---PRFKSKVKDDYDLCSICFAAM 413 (575)
Q Consensus 375 ~vH~GV~CDgC~~~PI~G---~RYKCsvC~DyDLC~~C~~~~ 413 (575)
..+.-..|+.|+. .|.| .+|+|..| .+..|..|....
T Consensus 525 ~~~~~t~C~~C~~-~l~gl~~qg~~C~~C-~~~vHk~C~~~v 564 (587)
T 3ky9_A 525 SFEETTSCKACQM-LLRGTFYQGYRCHRC-RASAHKECLGRV 564 (587)
T ss_dssp CCSSCCBCTTTCS-BCCSSSCCEEEETTT-CCEECSGGGGGS
T ss_pred eCCCCcccccccc-cccccccCCcCCCCC-CCccchhhhhcC
Confidence 3456689999996 4655 67999999 688899998864
No 82
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=26.61 E-value=67 Score=25.91 Aligned_cols=70 Identities=26% Similarity=0.329 Sum_probs=43.2
Q ss_pred ceEEEEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 4 TMVIKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 4 ~~viKv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
.+-|+|+. ++ +.|.+.+.. +....+|..+|++.++++++ ...|.|. |. .|.|+..|.+.=.+....|
T Consensus 17 ~m~i~Vk~~~g--~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrL~~~---Gk--~L~D~~tL~~~gi~~g~~i 84 (91)
T 3v6c_B 17 SMQIFVNTLTG--THITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLSDYNIQKESTL 84 (91)
T ss_dssp SEEEEEECTTS--CEEEEEECT----TCBHHHHHHHHHHHHCCCGG-GCEEEET---TE--ECCTTCBTGGGTCCTTCEE
T ss_pred eEEEEEEeCCC--CEEEEEECC----CCCHHHHHHHHHhhhCCChh-hEEEEEC---Ce--ECCCcCcHHHCCCCCCCEE
Confidence 35667773 44 445555542 45678899999999999975 5677784 32 3667666665323333434
Q ss_pred EEE
Q 008160 83 RID 85 (575)
Q Consensus 83 rit 85 (575)
.+.
T Consensus 85 ~l~ 87 (91)
T 3v6c_B 85 HLV 87 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 83
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.47 E-value=1.2e+02 Score=26.14 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=40.0
Q ss_pred EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
-+||.=.+-.+|+-|-.. ++..|+.|.+..|+|+. .. +-=+.+|||- +.||+|...
T Consensus 11 pfkV~~~~Rs~k~GV~A~-------sL~EL~~K~~~~l~l~~-~~-~~lvLeeDGT---~VddEeyF~ 66 (91)
T 2eel_A 11 PFRVSNHDRSSRRGVMAS-------SLQELISKTLDALVIAT-GL-VTLVLEEDGT---VVDTEEFFQ 66 (91)
T ss_dssp EEEEECTTSCCCEEEEES-------SHHHHHHHHHHHTTCSS-SC-EEEEETTTCC---BCCCHHHHT
T ss_pred CEEEecCCCCeEEeEEcC-------CHHHHHHHHHHHhcCCC-CC-cEEEEeeCCc---EEechhhhh
Confidence 478886666777777754 46779999999999963 33 3347788994 456777753
No 84
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.10 E-value=37 Score=32.41 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=26.3
Q ss_pred CceecCCCCCC-CcccceEEeccCCCCccchhhhhc
Q 008160 378 KGVRCDGCGVH-PITGPRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 378 ~GV~CDgC~~~-PI~G~RYKCsvC~DyDLC~~C~~~ 412 (575)
+.-.|-.|+.. .+...|++|..|-. -+|..|-..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~-v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQ-VFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCC-EECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCC-EEChHHhCC
Confidence 44689999863 46778999999964 489999764
No 85
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=25.59 E-value=46 Score=27.49 Aligned_cols=71 Identities=25% Similarity=0.324 Sum_probs=43.5
Q ss_pred ceEEEEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160 4 TMVIKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (575)
Q Consensus 4 ~~viKv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L 82 (575)
.+.|+|+. .+ +.|.+.+.. +....+|..+|++.++++++ ...|-|.. - .|.|+.-|.+.-.+....|
T Consensus 22 ~m~I~Vk~~~g--~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~G---k--~L~D~~tL~~~~i~~g~~i 89 (98)
T 4hcn_B 22 PMQIFVKTLTG--KTITLEVES----SDTIDNVKSKIQDKEGIPPD-QQRLIFAG---K--QLEDGRTLSDYNIQKESTL 89 (98)
T ss_dssp CCEEEEEETTC--CEEEEECCT----TCBHHHHHHHHHHHHCCCGG-GCEEEETT---E--ECCTTCBSGGGTCCTTEEE
T ss_pred eEEEEEEeCCC--CEEEEEECC----CCcHHHHHHHHHHHhCCChh-HEEEEECC---E--ECCCCCcHHHCCCCCCCEE
Confidence 35677774 43 345666542 44678899999999999975 55777843 2 3566666665323334444
Q ss_pred EEEE
Q 008160 83 RIDV 86 (575)
Q Consensus 83 ritV 86 (575)
.+.+
T Consensus 90 ~l~~ 93 (98)
T 4hcn_B 90 HLVL 93 (98)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 4444
No 86
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=25.22 E-value=1.1e+02 Score=30.28 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=54.6
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
.+.+||.+-|....|.+.. .-.-.+|.++|.+-++|...+-|-|.|. .+|...-|+.+.-|.+....+..+++
T Consensus 22 ~~~~~V~lldg~~~~~v~~------~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~q~~~~~~~~~ 94 (314)
T 1h4r_A 22 TFTVRIVTMDAEMEFNCEM------KWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLDHDVSKEEPVT 94 (314)
T ss_dssp EEEEEEECSSCEEEEEEET------TCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGGSSCCCSSSEE
T ss_pred eeEEEEEeCCceEEEEeCC------CCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHHcCCCCCCCEE
Confidence 4789999988765566653 3357789999999999998889999998 67877778777666542111223444
Q ss_pred EEE
Q 008160 84 IDV 86 (575)
Q Consensus 84 itV 86 (575)
+..
T Consensus 95 l~f 97 (314)
T 1h4r_A 95 FHF 97 (314)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 87
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.20 E-value=40 Score=32.59 Aligned_cols=34 Identities=15% Similarity=0.428 Sum_probs=26.1
Q ss_pred CceecCCCCCC-CcccceEEeccCCCCccchhhhhc
Q 008160 378 KGVRCDGCGVH-PITGPRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 378 ~GV~CDgC~~~-PI~G~RYKCsvC~DyDLC~~C~~~ 412 (575)
..-.|-.|+.. .+.-.|++|..|- .-+|..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG-~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACG-QIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTC-CEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCc-CEeChhhcCC
Confidence 34579999863 4667899999994 5599999764
No 88
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=24.90 E-value=1.6e+02 Score=24.26 Aligned_cols=70 Identities=11% Similarity=0.223 Sum_probs=46.1
Q ss_pred eEEEEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160 5 MVIKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 5 ~viKv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
+.|+|+. .+. .|.+.++. +-....|..+|+...+++++ ...|.| +|. .|.|+.-|.+.=.+....|.
T Consensus 22 m~I~Vk~~~g~--~~~l~v~~----~~tv~~lK~~i~~~~gip~~-~qrLif---~Gk--~L~d~~tl~dy~i~~g~~I~ 89 (97)
T 1wyw_B 22 IKLKVIGQDSS--EIHFKVKM----TTHLKKLKESYCQRQGVPMN-SLRFLF---EGQ--RIADNHTPKELGMEEEDVIE 89 (97)
T ss_dssp EEEEEECTTCC--EEEEEEET----TSCTHHHHHHHHHHHTCCGG-GEEEEE---TTE--ECCTTCCHHHHTCCTTCEEE
T ss_pred EEEEEEeCCCC--EEEEEECC----CCcHHHHHHHHHHHHCCChh-hEEEEE---CCe--EcCCCCCHHHCCCCCCCEEE
Confidence 6677774 333 34444432 34567799999999999975 788888 465 45677667665455556566
Q ss_pred EEE
Q 008160 84 IDV 86 (575)
Q Consensus 84 itV 86 (575)
+.+
T Consensus 90 l~~ 92 (97)
T 1wyw_B 90 VYQ 92 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 89
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=24.68 E-value=93 Score=27.80 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=31.1
Q ss_pred EEe--cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCC
Q 008160 466 RDR--GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELP 521 (575)
Q Consensus 466 rvr--Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~p 521 (575)
.|+ |+. .=+ .+.+.|.-|+.-.....+. ..+++.|++|++..++|.+..+..+
T Consensus 23 tVkN~Gt~-~s~-a~~V~~yl~~p~~gg~~vg-t~tv~~LaaG~s~t~~v~~~~~~~~ 77 (122)
T 2kut_A 23 RVTNRGAA-EAH-NVPVAVYLGNPAQGGVEIG-RDTISRIPVGGTGLARVQWKATRKL 77 (122)
T ss_dssp EEECCSSS-CBC-CCCEEECSSCTTTCCCCCB-CCCCSCBCTTCEEECCEEEECCCCC
T ss_pred EEEeCCCc-ccC-cEEEEEEeCCCccCCeEEe-eEEccccCCCCeEEEEEEEecCCcc
Confidence 455 777 554 4556555554211111111 2345689999999988887777544
No 90
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=24.25 E-value=1.3e+02 Score=26.42 Aligned_cols=34 Identities=3% Similarity=0.128 Sum_probs=27.9
Q ss_pred CCCCCEEEEEEEeeCC--CCCCeEeeEEEeECCCCC
Q 008160 503 VPVEGEIDIAVDFTAP--ELPGRYISYWRMSSPSGV 536 (575)
Q Consensus 503 v~PGEevdVSV~L~AP--~~pG~Y~SyWRL~tp~G~ 536 (575)
|.+||++..+..|-.+ --++.|.-.|.|.+++|.
T Consensus 82 l~~G~~~~y~~~lpV~~~~P~~~~~v~~~L~d~~~~ 117 (130)
T 1nep_A 82 IEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQ 117 (130)
T ss_dssp BCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSC
T ss_pred ccCCcEEEEEEEeEecccCCCccEEEEEEEEcCCCC
Confidence 8899999999888744 345889999999987753
No 91
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=24.23 E-value=1.9e+02 Score=28.59 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=52.7
Q ss_pred ceEEEEEeCC-ceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160 4 TMVIKVKYGD-TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (575)
Q Consensus 4 ~~viKv~~gd-~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a 74 (575)
.+.+||.+-| +...|.+.- .-.-.+|.++|.+-++|...+-|-|.|.|.+|...-|+.+.-+.+.
T Consensus 17 ~~~~~V~lldgt~~~~~vd~------~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEK------HAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp CCEEEEECTTSCEEEEECCT------TCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred eEEEEEEccCCCEEEEEECC------CCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 4789999865 566677763 3357789999999999998788999999998988888888877764
No 92
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=23.93 E-value=1.2e+02 Score=25.63 Aligned_cols=72 Identities=26% Similarity=0.324 Sum_probs=44.2
Q ss_pred ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (575)
Q Consensus 4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr 83 (575)
.+.|+|+.-+. +.|.+.+.. +....+|..+|++.++++++ ...|.|. |- .|.|+.-|.+.-.+....|.
T Consensus 35 ~m~I~Vk~~~g-~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~---Gk--~L~D~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 35 AMQIFVKTLTG-KTITLEVEP----SDTIENVKAKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp CEEEEEECSSS-CEEEEEECT----TCBHHHHHHHHHHHHCCCTT-TEEEEET---TE--ECCSSCBTTTTTCCTTCEEE
T ss_pred eEEEEEEcCCC-CEEEEEeCC----CCCHHHHHHHHHHHHCcCcc-cEEEEEC---CE--ECCCCCcHHHcCCCCCCEEE
Confidence 46677775321 445555542 45678899999999999964 6777784 32 45666556543233344455
Q ss_pred EEE
Q 008160 84 IDV 86 (575)
Q Consensus 84 itV 86 (575)
+.+
T Consensus 104 l~~ 106 (111)
T 2ojr_A 104 LVL 106 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 93
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.68 E-value=2.1e+02 Score=23.01 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=45.1
Q ss_pred eEEEEEeCCc-eeeeeeccCCCCCcccCHHHHHHHHHHHh--CCCCCCceEEEEecCCCCeEEEcCchhHHHH--HHhcC
Q 008160 5 MVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLF--NFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV--MRQRL 79 (575)
Q Consensus 5 ~viKv~~gd~-lRRf~~~~~~n~~~dl~~~~L~~ki~~~F--~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a--~~q~l 79 (575)
+.|+|+..+. ..-|.+.+. .+-+..+|..+|++.+ +++++ ...|.|. |- .|.|+.-|.+. -.+..
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~----~~~TV~~lK~~I~~~~~~~i~~~-~QrLi~~---Gk--~L~D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGD----RGWSVGHLKAHLSRVYPERPRPE-DQRLIYS---GK--LLLDHQCLRDLLPKQEKR 77 (93)
T ss_dssp CEEEEECSSSSCCCEEEECC----TTSCHHHHHHHHHHHSTTCCCTT-TCEEEET---TE--ECCSSSCHHHHSCSSSCS
T ss_pred EEEEEEeCCCCeEEEEEecC----CCCcHHHHHHHHHHHhcCCCChH-HeEEEEC---CE--ECcCcCCHHHHhcCCCCC
Confidence 5666665432 234555543 2456788999999999 88865 6667775 42 56777777765 23444
Q ss_pred ceEEEEE
Q 008160 80 KFLRIDV 86 (575)
Q Consensus 80 ~~LritV 86 (575)
..|.+.+
T Consensus 78 ~~i~lv~ 84 (93)
T 1wgd_A 78 HVLHLVC 84 (93)
T ss_dssp EEEEEEC
T ss_pred CEEEEEe
Confidence 5455544
No 94
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.44 E-value=1.2e+02 Score=25.92 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=45.3
Q ss_pred eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri 84 (575)
++|++++++..- .+.+.. +-....|..+|++..+++++..-++-|. -|- |.|+..|.+.-.+....|.+
T Consensus 10 ~~~~vk~~Gk~~--~v~v~~----~~TV~~LK~~I~~~tgIpp~~QkLi~~~--~gk---L~D~~tLs~~~I~~gstL~l 78 (100)
T 2dzm_A 10 LDFRVEYRDRNV--DVVLED----TCTVGEIKQILENELQIPVSKMLLKGWK--TGD---VEDSTVLKSLHLPKNNSLYV 78 (100)
T ss_dssp EEEEEECSSCEE--EEEEET----TSBHHHHHHHHHHHHCCCTTTCCEECCS--SSC---CCTTSBHHHHCCCSEEEEEE
T ss_pred EEEEEEeCCeEE--EEEECC----CCcHHHHHHHHHHHHCCChhHeEEEccC--CCC---CCCcCCHHHcCCCCCCEEEE
Confidence 678999988644 455542 2356789999999999999866654333 244 46777787653444444444
No 95
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=23.41 E-value=56 Score=28.10 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=29.7
Q ss_pred CCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeE
Q 008160 476 RGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRY 524 (575)
Q Consensus 476 ~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y 524 (575)
.+|.|..-|- -+... ..+.++.+.||+++.+.++|+ |.++|.-
T Consensus 37 ~~c~~~vEG~-GL~~~----~~~~~~~v~pg~~~~~~~~~~-P~~~G~~ 79 (102)
T 2xzz_A 37 TNVVFRLEGS-GLQRP----KILNVGDIGGNETVTLRQSFV-PVRPGPR 79 (102)
T ss_dssp CSEEEEEEET-TTEEE----EEEEECCBCTTCEEEEEEEEC-CCSCSSC
T ss_pred cCEEEEEECC-CCCcc----eEEEcCcCCCCCEEEEEEEEe-cCcccce
Confidence 6777754442 22211 233446899999999999998 9999984
No 96
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=23.22 E-value=53 Score=27.48 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=27.9
Q ss_pred cccCceecCCCCCC-CcccceEEeccCCCCccchhhhhc
Q 008160 375 MFHKGVRCDGCGVH-PITGPRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 375 ~vH~GV~CDgC~~~-PI~G~RYKCsvC~DyDLC~~C~~~ 412 (575)
.-|....|-.|+.. .+...|++|..|-. -+|..|-..
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~-vfC~~Cs~~ 42 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGR-AFCNGCLSF 42 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCC-EEETTTSCE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCC-EEChhHcCC
Confidence 34556689999973 46778999999964 489999754
No 97
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=22.94 E-value=43 Score=28.20 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=25.2
Q ss_pred CcccCceecCCCCCCCcccc-----eEEeccCCCCccchhhhh
Q 008160 374 GMFHKGVRCDGCGVHPITGP-----RFKSKVKDDYDLCSICFA 411 (575)
Q Consensus 374 ~~vH~GV~CDgC~~~PI~G~-----RYKCsvC~DyDLC~~C~~ 411 (575)
...|.-..||.|+. .|.|. -|+|..| .|..=-.|..
T Consensus 30 ~~~~~PT~Cd~C~~-~lWGl~kqp~G~~C~~C-~~~~HkrC~~ 70 (84)
T 2row_A 30 TLYHFPTNCEACMK-PLWHMFKPPPALECRRC-HIKCHKDHMD 70 (84)
T ss_dssp ECCSSCEECSSSSS-EECCSSSCCCEEEESSS-CCEEEHHHHH
T ss_pred EcCCCCcchhhcCH-hhhccccCCCCCEecCC-CCccchhHhC
Confidence 45677799999995 78885 7889988 3433333544
No 98
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=22.83 E-value=29 Score=28.99 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=15.6
Q ss_pred eEEEEEeCCceeeeeeccCCC
Q 008160 5 MVIKVKYGDTLRRFNARVDEN 25 (575)
Q Consensus 5 ~viKv~~gd~lRRf~~~~~~n 25 (575)
+=|||+|+ +||.+|++++
T Consensus 51 lP~~V~F~---~kF~aHlred 68 (75)
T 1dj7_B 51 LPVLVKFE---QRFKAHFRPD 68 (75)
T ss_dssp SCEEEEET---TTEEEEECGG
T ss_pred CCEEEEEe---hHhhhhcchh
Confidence 55899998 9999999965
No 99
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=22.31 E-value=2.2e+02 Score=22.78 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=40.2
Q ss_pred cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (575)
Q Consensus 3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~ 73 (575)
+++++.+++++....+.+. . +....+|..+|++..+++++ ...|.|. |- .|.|+.-|.+
T Consensus 11 ~~~~~~~~~~g~~~~l~v~--~----~~TV~~LK~~I~~~~gip~~-~qrL~~~---Gk--~L~D~~tL~~ 69 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVS--P----DCTVKDLKSQLQPITNVLPR-GQKLIFK---GK--VLVETSTLKQ 69 (85)
T ss_dssp CCEEEEEEETTEEEEEEEC--T----TSBHHHHHHHHHHHHCCCTT-TCEEEET---TE--ECCTTCBTTT
T ss_pred CcEEEEEEECCEEEEEEEC--C----CCcHHHHHHHHHHHHCcChH-HEEEEEC---Ce--ECCCcCCHHH
Confidence 4578888898865544444 2 44577899999999999975 5666674 42 3555555554
No 100
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=21.64 E-value=75 Score=25.65 Aligned_cols=66 Identities=12% Similarity=0.261 Sum_probs=41.7
Q ss_pred eeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEEEEecCC
Q 008160 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNND 91 (575)
Q Consensus 16 RRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~LritV~l~~~ 91 (575)
+.|.+.+.. +-+..+|..+|++.++++++ ...|-|. | -.|.|+..|.+.-.+....|.+.+.+.+.
T Consensus 11 ~~~~l~v~~----~~TV~~LK~~I~~~~gip~~-~qrLi~~---G--k~L~D~~tL~~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 11 KEIEIDIEP----TDKVERIKERVEEKEGIPPQ-QQRLIYS---G--KQMNDEKTAADYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp CEEEEECCT----TCBHHHHHHHHHHHHCCCGG-GCEEEET---T--EECCTTSBTTTTTCCTTCEEEEECBCC--
T ss_pred CEEEEEECC----CCCHHHHHHHHHHHHCcChh-HEEEEEC---C--eECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 345566542 44678899999999999975 5677784 3 24567666665434445556666655444
No 101
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.10 E-value=57 Score=26.09 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=26.9
Q ss_pred ccCceecCCCCCC-CcccceEEeccCCCCccchhhhhc
Q 008160 376 FHKGVRCDGCGVH-PITGPRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 376 vH~GV~CDgC~~~-PI~G~RYKCsvC~DyDLC~~C~~~ 412 (575)
|-+.-.|-.|+.. .+...|++|..|-. -+|..|-..
T Consensus 8 W~~~~~C~~C~~~F~~~~RrHHCR~CG~-v~C~~Cs~~ 44 (73)
T 1vfy_A 8 WIDSDACMICSKKFSLLNRKHHCRSCGG-VFCQEHSSN 44 (73)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCC-EECGGGSCE
T ss_pred CccCCcccCCCCccCCccccccCCCCCE-EEcccccCC
Confidence 3344579999973 46678999999964 499999753
No 102
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=20.92 E-value=1.8e+02 Score=23.27 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=34.7
Q ss_pred EEEEEeCCceeeee-eccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEc
Q 008160 6 VIKVKYGDTLRRFN-ARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLV 66 (575)
Q Consensus 6 viKv~~gd~lRRf~-~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~ 66 (575)
.|+|+.-+-.+++. +. .+-...+|..+|++..+++++ ...|.|.- .+-.+.+.
T Consensus 2 ~i~vr~~~G~~~v~~l~------~~~Tv~~Lk~~I~~~~gi~~~-~qrL~~~~-p~k~l~l~ 55 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLS------SRTRLRELQGQIAAITGIAPG-SQRILVGY-PPECLDLS 55 (86)
T ss_dssp CEEEEETTEEEEECSCC------TTCBHHHHHHHHHHHTCCCTT-TCCCEESS-CCCCCCCC
T ss_pred EEEEEcCCCCEEeeecC------CCCCHHHHHHHHHHHhCCCcc-ceEEEeCC-CCcccccC
Confidence 46777776655554 43 144678899999999999864 56677742 24444444
No 103
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=20.64 E-value=61 Score=28.95 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.6
Q ss_pred CCCCCCEEEEEEEeeCCCCCCeEe
Q 008160 502 GVPVEGEIDIAVDFTAPELPGRYI 525 (575)
Q Consensus 502 ~v~PGEevdVSV~L~AP~~pG~Y~ 525 (575)
.++|||+..+.+.+-.+..||.|+
T Consensus 73 tl~pGE~~~f~~~w~~~~~pG~Yt 96 (120)
T 3isy_A 73 TLESGETYDFSDVWKEVPEPGTYE 96 (120)
T ss_dssp EECTTCEEEEEEEESSCCCSEEEE
T ss_pred EECCCCEEEEEEEeCCCCCCccEE
Confidence 489999999999999878899985
No 104
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=20.55 E-value=1.4e+02 Score=22.40 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=41.2
Q ss_pred EEEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEE
Q 008160 7 IKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID 85 (575)
Q Consensus 7 iKv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lrit 85 (575)
|+|+. .+ +.|.+.+.. +....+|..+|++.+++++ ....|.|. |- .|.|+.-|.+.-.+....|.+.
T Consensus 3 i~vk~~~g--~~~~~~v~~----~~tv~~lK~~i~~~~~i~~-~~q~L~~~---g~--~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 3 IKVKTLTG--KEIEIDIEP----TDKVERIKERVEEKEGIPP-QQQRLIYS---GK--QMNDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEECTTS--CEEEEECCT----TCBHHHHHHHHHHHHCCCG-GGEEEEET---TE--ECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEECCCC--CEEEEEECC----CChHHHHHHHHHHHHCcCh-HHEEEEEC---CE--ECCCCCcHHHcCCCCCCEEEEE
Confidence 55555 33 344555532 4467789999999999996 47778885 32 3566655654323334445544
Q ss_pred E
Q 008160 86 V 86 (575)
Q Consensus 86 V 86 (575)
+
T Consensus 71 ~ 71 (76)
T 1ndd_A 71 L 71 (76)
T ss_dssp E
T ss_pred E
Confidence 4
No 105
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.53 E-value=50 Score=29.29 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=25.0
Q ss_pred eecCCCCCC-CcccceEEeccCCCCccchhhhhc
Q 008160 380 VRCDGCGVH-PITGPRFKSKVKDDYDLCSICFAA 412 (575)
Q Consensus 380 V~CDgC~~~-PI~G~RYKCsvC~DyDLC~~C~~~ 412 (575)
..|..|+.. .+...|++|..|-. -+|..|-..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~-vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGN-IFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCC-EECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCe-EEChHHhCC
Confidence 478889863 46788999999964 499999764
Done!