BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008161
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 143/332 (43%), Gaps = 43/332 (12%)
Query: 207 VCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGG 266
+ CFG A LID +K P F++ GG + A+A+ARLGG
Sbjct: 7 ILCFGEA-------------LIDXLAQPLVKKG--XPRAFLQCAGGAPANVAVAVARLGG 51
Query: 267 KVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPC 326
V F+G LG D +G + V T + + TA++ + + G + +P
Sbjct: 52 AVQFVGXLGSDXFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPP 111
Query: 327 AEDALTKSEINIDV-LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL 385
A D L + E D +A +F+ ++S + ++ T + + ++ G I+ +D+N
Sbjct: 112 AADLLFRVEHFQDASFSDALIFHACSNSXTDADIAEVTFEGXRRAQAAGAIVSFDLNFRP 171
Query: 386 PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445
LW +GE + + +LADV++++ +EL++L + NA VI
Sbjct: 172 XLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADA-----NA----------VI 216
Query: 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRM 505
LW ++L VT+ VH+YT+ G E D +A+GD V G +
Sbjct: 217 QQLWQGRAQLLLVTDAAGPVHWYTR-----TAGGEVPTFRVQVQDSNAAGDAFVGGXLYT 271
Query: 506 LTVQ----PHLIT---DKGYLVRTIKYAIDCG 530
Q LI D +V T+++A G
Sbjct: 272 FAQQFDDAAALIDFCHDPESIVSTLRFAAAVG 303
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 6/182 (3%)
Query: 243 PEK---FIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRI 299
PEK +++ PGG + + + +ARLGG+ F+G LGDD+ G+ + N V +R+
Sbjct: 39 PEKQNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL 98
Query: 300 DAKRPTAVSQMKIGKRGRLRMT-CVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERN 358
DA +AV + + G T V P A+ ++ + + ++ + FYFS+ + +R
Sbjct: 99 DADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQD--LPPFRQYEWFYFSSIGLTDRP 156
Query: 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFL 418
+ L+ + ++ GG + +DVNL +W + +E I ++ LA + +V+ EL L
Sbjct: 157 AREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQL 216
Query: 419 CG 420
G
Sbjct: 217 SG 218
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 6/182 (3%)
Query: 243 PEK---FIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRI 299
PEK +++ PGG + + + +ARLGG+ F+G LGDD+ G+ + N V +R+
Sbjct: 39 PEKQNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL 98
Query: 300 DAKRPTAVSQMKIGKRGRLRMT-CVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERN 358
DA +AV + + G T V P A+ ++ + + ++ + FYFS+ + +R
Sbjct: 99 DADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQD--LPPFRQYEWFYFSSIGLTDRP 156
Query: 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFL 418
+ L+ + ++ GG + +DVNL W + +E I ++ LA + +V+ EL L
Sbjct: 157 AREACLEGARRXREAGGYVLFDVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQL 216
Query: 419 CG 420
G
Sbjct: 217 SG 218
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 100/176 (56%), Gaps = 7/176 (3%)
Query: 246 FIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPT 305
F + PGG + A+ ++RLG K + + K+G+D +G+ ++ ++ NV TR + D K+ T
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHT 87
Query: 306 AVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365
+ +++ K A T ++IN D+++EAK+ F + +L RN T+
Sbjct: 88 GIVFVQL-KGASPSFLLYDDVAYFNXTLNDINWDIVEEAKIVNFGS-VILARNPSRETVX 145
Query: 366 AIKISKQFGG--IIFYDVNLPLPLWQSGEETKM-FIQQAWTLADVIEVTKQELEFL 418
K+ K+ G +I +DVNL L LW+ EE + ++++ LAD+++ +++E+ +L
Sbjct: 146 --KVIKKIKGSSLIAFDVNLRLDLWRGQEEEXIKVLEESIKLADIVKASEEEVLYL 199
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 100/176 (56%), Gaps = 7/176 (3%)
Query: 246 FIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPT 305
F + PGG + A+ ++RLG K + + K+G+D +G+ ++ ++ NV TR + D K+ T
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHT 87
Query: 306 AVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365
+ +++ K A T ++IN D+++EAK+ F + +L RN T+
Sbjct: 88 GIVFVQL-KGASPSFLLYDDVAYFNXTLNDINWDIVEEAKIVNFGS-VILARNPSRETVX 145
Query: 366 AIKISKQFGG--IIFYDVNLPLPLWQSGEETKM-FIQQAWTLADVIEVTKQELEFL 418
K+ K+ G +I +DVNL L LW+ EE + ++++ LAD+++ +++E+ +L
Sbjct: 146 --KVIKKIKGSSLIAFDVNLRLDLWRGQEEEXIKVLEESIKLADIVKASEEEVLYL 199
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 93/190 (48%), Gaps = 2/190 (1%)
Query: 238 DALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSV 297
++L ++ R GG + A+ L+RLG KVA + +LG D +G +L + + T +
Sbjct: 41 NSLSQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVLKGEQIITDGI 100
Query: 298 RIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLER 357
+ D +R T + + + K R A+ L + +I +++K +K+F+ ST + +
Sbjct: 101 QQDKERRTTI--VYVSKSTRTPDWLPYREADXYLQEDDIIFELIKRSKVFHLSTFILSRK 158
Query: 358 NMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEF 417
+ T ++A +++ G I+ +D LW G++ +++ + AD ++ + +
Sbjct: 159 PARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARH 218
Query: 418 LCGIKPTEEF 427
L G E +
Sbjct: 219 LFGPDSPENY 228
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 100/203 (49%), Gaps = 7/203 (3%)
Query: 246 FIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDA---K 302
F + GG + I ++LG K F+GK+ DD++G+ + Y V T ++ +D K
Sbjct: 39 FSKYVGGSPANIVIGSSKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHK 98
Query: 303 RPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362
A +++K + + + + A+ L+ E+N ++ +K+ S ++ + +
Sbjct: 99 TGLAFTEIKSPEECSI-LXYRQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSREA 157
Query: 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIK 422
L+AI+++K+ + ++++ W++ EET ++ +D++ T++E + L
Sbjct: 158 VLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLE--N 215
Query: 423 PTEEFDTKNNARSKFVHYEPEVI 445
TE+ D R F H PE+I
Sbjct: 216 RTEKGDNDETIRYLFKH-SPELI 237
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 11/206 (5%)
Query: 218 VPSGRPANRLIDHEI-HERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGD 276
V +G P L+ E H R K L E ++ GG + A+ALARLG KV F+G++G+
Sbjct: 5 VTAGEPLVALVPQEPGHLRGKRLL---EVYV---GGAEVNVAVALARLGVKVGFVGRVGE 58
Query: 277 DEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCAEDALTKSE 335
DE G + + V R A T + + G+ R+ K A AL
Sbjct: 59 DELGAMVEERLRAEGVDLTHFR-RAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGA 117
Query: 336 INIDVLKEAKMFYFSTHS-MLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEET 394
+ D L+ + + S + L ++ +L A++ +K+ G + DVN LW S EE
Sbjct: 118 FDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLW-SPEEA 176
Query: 395 KMFIQQAWTLADVIEVTKQELEFLCG 420
+ F+++A D++ ++++E E L G
Sbjct: 177 RGFLERALPGVDLLFLSEEEAELLFG 202
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 247 IRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTA 306
+ + GG G+ A +A LGG+ A+ GK+ DD+ G+ + + V ++ +D PTA
Sbjct: 56 VEASGGSAGNTAAGVASLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTA 115
Query: 307 VSQMKIGKRG-RLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365
S + + + G R T + C E L ++ DV+ ++K+ YF + K +
Sbjct: 116 RSXIFVTEDGERSXNTYLGACVE--LGPEDVEDDVVAQSKVTYFEGYLWDPPRAKDAIRE 173
Query: 366 AIKISKQFG 374
A +I+ G
Sbjct: 174 AARIAHAHG 182
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 222 RPANRLIDHE----IHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDD 277
+ A LID E ++ R AL A GG G+ A +A LGGK A+ G + D
Sbjct: 54 KAAXNLIDAERAELLYSRXGPALEAS-------GGSAGNTAAGVANLGGKAAYFGNVAAD 106
Query: 278 EYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRG-RLRMTCVKPCAEDALTKSEI 336
+ G + + V ++ A PTA S + + + G R T + C E L ++
Sbjct: 107 QLGDIFTHDIRAQGVHYQTKPKGAFPPTARSXIFVTEDGERSXNTYLGACVE--LGPEDV 164
Query: 337 NIDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG 374
DV+ +AK+ YF + K L +I+ Q G
Sbjct: 165 EADVVADAKVTYFEGYLWDPPRAKEAILDCARIAHQHG 202
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 100/272 (36%), Gaps = 36/272 (13%)
Query: 244 EKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKR 303
E F + G + AI LARLG KV + +LG D G+ +L + V DA +
Sbjct: 51 EAFHKRTAGAETNVAIGLARLGLKVGWASRLGTDSXGRYLLAAXAAEGIDCSHVVCDATQ 110
Query: 304 PTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERN----M 359
T Q K G++ P + + V + + S + +
Sbjct: 111 KTGF-QFK----GKVTDGSDPPVEYHRKGSAASHXGVADIDEAWLLSARHLHATGVFPAI 165
Query: 360 KSTTLQAIK----ISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQEL 415
+TTL A + + + G + +D NL LW + E + I T AD + +E
Sbjct: 166 SATTLPAARKTXDLXRAAGRSVSFDPNLRPTLWATPELXRDAINDLATRADWVLPGXEEG 225
Query: 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHE-NLKVLFVTNGTSKVHYYTKEDDG 474
FL G PE +A + + K++ V G ++ + G
Sbjct: 226 RFLTG------------------ETTPEGVARFYRQLGAKLVVVKLGAEGAYFDGEAGSG 267
Query: 475 AVLGTEDAPLTPFTSDMSASGDGIVAGIMRML 506
V G A + D +GDG G++ L
Sbjct: 268 RVAGFPVAEVV----DTVGAGDGFAVGVISAL 295
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 109/289 (37%), Gaps = 50/289 (17%)
Query: 254 TGSAAIAL---ARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQM 310
+G+ AI + RLG + +G+D +G ++ + + V R + + T + +
Sbjct: 37 SGAPAIFIDQVTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFV 96
Query: 311 KIGKRG-RLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQAIKI 369
G R + +K A L+ ++ ++LK+ F+ S+ + +A+ I
Sbjct: 97 TYHNSGDRDFIFNIKNAACGKLSAQHVDENILKDCTHFHIXGSSLFSFHXVDAVKKAVTI 156
Query: 370 SKQFGGIIFYDVN-----LPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPT 424
K GG+I +D N L +P E + + L D+ ++ E+ L P
Sbjct: 157 VKANGGVISFDPNIRKEXLDIP------EXRDALHFVLELTDIYXPSEGEVLLL---SP- 206
Query: 425 EEFDTKNNARSKFVHYEPE-VIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAP 483
H PE IA E +K + V G YY+ + V E P
Sbjct: 207 --------------HSTPERAIAGFLEEGVKEVIVKRGNQGASYYSANEQFHV---ESYP 249
Query: 484 LTPFTSDMSASGDGIVAGIM--RMLTVQPHLITDKGYLVRTIKYAIDCG 530
+ D + +GD + R L H R ++YA CG
Sbjct: 250 VEEV--DPTGAGDCFGGAWIACRQLGFDAH---------RALQYANACG 287
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 251 GGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQM 310
GG + A+A R G +AF+ GDD G+++ + +N+ V + T V+ +
Sbjct: 41 GGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALI 100
Query: 311 KIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS---TTLQAI 367
+ G + + A AL+ + L EA+ + S L ++S + + A
Sbjct: 101 FVNGEGE-NVIGIHAGANAALSPA------LVEAQRERIANASALLMQLESPLESVMAAA 153
Query: 368 KISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEF 427
KI+ Q I+ + P P + +E L D+I + E E L GI+ +
Sbjct: 154 KIAHQNKTIVALN---PAPARELPDEL-------LALVDIITPNETEAEKLTGIRVENDE 203
Query: 428 DTKNNAR 434
D A+
Sbjct: 204 DAAKAAQ 210
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 246 FIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPT 305
F + G + +A + G + + K+GDDE+G + ++ V ++ID PT
Sbjct: 28 FEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPT 87
Query: 306 AVSQMKIGKRGRLRMTCV---KPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362
+ ++ L+ + K A L+ +++ + +K A + + S ++ + ST
Sbjct: 88 GIFFIQRHYPVPLKSESIYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITL---AISST 144
Query: 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETK 395
+A+ + + +D N+ L LW S EE K
Sbjct: 145 AKEAVYKAFEIASNRSFDTNIRLKLW-SAEEAK 176
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 246 FIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPT 305
F + G + IA+ R + + ++G+DE+G+ ++ Y + T +++D + T
Sbjct: 28 FEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFT 87
Query: 306 AVSQMKIGKRGRLRMTCV---KPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNMKS 361
+ ++ G ++ V K A L+ +IN + ++ +++ + + ++ + N K
Sbjct: 88 GIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINENYVRNSRLVHSTGITLAISDNAKE 147
Query: 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETK 395
++A +++K D N+ LW S E+ K
Sbjct: 148 AVIKAFELAKSRS----LDTNIRPKLWSSLEKAK 177
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 243 PEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAK 302
P + ++ G SAA A+ R GG+ + G +GDDE G +L ++ + + T +
Sbjct: 58 PYEVLQIAEGXASSAAYAVHRXGGRASLWGAVGDDETGTRILRDLSESGIDTSGXTVAPG 117
Query: 303 RPTAVSQMKIGKRG 316
+A+S + I RG
Sbjct: 118 ARSALSTIIIDNRG 131
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 3/179 (1%)
Query: 244 EKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKR 303
+ F + GG + ++A AR G A + ++G+D +G+ +L + V + V D
Sbjct: 34 QSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFGEYLLAELERLGVDNQYVATDQTF 93
Query: 304 PTAVSQMKIGKRGRLRMTCVK-PCAEDA-LTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361
T V+ +I + + P A D + +++++D ++EA + +F+ E +
Sbjct: 94 KTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVSLDDVREADILWFTLTGFSEEPSRG 153
Query: 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420
T + + IF D++ W+S EE + A + V K+E E G
Sbjct: 154 THREILTTRANRRHTIF-DLDYRPXFWESPEEATKQAEWALQHSTVAVGNKEECEIAVG 211
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 10/189 (5%)
Query: 248 RSPGGCTGSAAIALAR----LGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKR 303
R GG T + ++ +AR V ++ LG D + Q L + NV T + R
Sbjct: 26 RGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFSQQXLDAWHGENVDTSLTQRXENR 85
Query: 304 PTAVSQMKIGKRG-RLRMTCVKPCAEDALTKSEINIDVLKEAKMF---YFSTHSM--LER 357
+ ++ G R A SE + + +E F Y S S+ L
Sbjct: 86 LPGLYYIETDSTGERTFYYWRNEAAAKFWLASEQSAAICEELANFDYLYLSGISLAILSP 145
Query: 358 NMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEF 417
+ L ++ + GG + +D N LW S EET+ QQ D+ +T + +
Sbjct: 146 TSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQXLECTDIAFLTLDDEDA 205
Query: 418 LCGIKPTEE 426
L G +P E+
Sbjct: 206 LWGQQPVED 214
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 42/273 (15%)
Query: 238 DALW--APEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTR 295
+ALW PE + GG + A +++ G + +G+DE G + ++ +
Sbjct: 11 EALWDVLPEG--KKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIXEVFKEKQLKNQ 68
Query: 296 SVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTH--- 352
R+D PT Q+ + G PC E + NI E K +T
Sbjct: 69 IERVD--YPTGTVQVTLDDEG-------VPCYEIKEGVAWDNIPFTDELKRLALNTRAVC 119
Query: 353 --SMLERN--MKSTTLQAIKISKQFGG-IIFYDVNLPLPLWQSGEETKMFIQQAWTLADV 407
S+ +RN ++T + + G + +D+NL + TK +++++ ++
Sbjct: 120 FGSLAQRNEVSRATINRFLDTXPDIDGQLKIFDINLRQDFY-----TKEVLRESFKRCNI 174
Query: 408 IEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHY 467
+++ +EL + D ++ Y NLK L +T G + +
Sbjct: 175 LKINDEELVTISRXFGYPGIDLQDKCWILLAKY-----------NLKXLILTCGINGSYV 223
Query: 468 YTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVA 500
+T V+ ++ P P +D +GD A
Sbjct: 224 FTP----GVVSFQETPKVP-VADTVGAGDSFTA 251
>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
Length = 351
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 9/196 (4%)
Query: 240 LWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRI 299
++ + F + GG + A LA+ G F+ KL ++ G A ++ V+T +
Sbjct: 33 IFQTDSFDVTYGGAEANVAAFLAQXGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIAR 92
Query: 300 DAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEI-NID---VLKEAKMFYFSTHSM- 354
R + ++IG R V A A+++++ + D +L A+ F+FS +
Sbjct: 93 GGNR-IGIYFLEIGASQR-PSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITPP 150
Query: 355 LERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQE 414
L + + A+K++ + G + D+N LW E K+ I DV+ +++
Sbjct: 151 LGKELPLILEDALKVANEKGVTVSCDLNYRARLWTKEEAQKVXIPFX-EYVDVLIANEED 209
Query: 415 LEFLCGIKPTEEFDTK 430
+E + GI E D K
Sbjct: 210 IEKVLGIS-VEGLDLK 224
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 251 GGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQM 310
GG + AIA AR+ F+ K+G D +L V ++ T + A+ T + +
Sbjct: 40 GGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFI 99
Query: 311 KIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQAIKIS 370
+ G+ V A +T ++ I+ K+A + + LE + + + A +I+
Sbjct: 100 TVNAEGQ-NTIYVYGGANMTMTPEDV-INA-KDAIINADFVVAQLEVPIPAI-ISAFEIA 155
Query: 371 KQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTK 430
K G + P P K + +L D+I + E E L GIK T E K
Sbjct: 156 KAHGVTTVLN---PAP-------AKALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMK 205
Query: 431 NNAR 434
+NA
Sbjct: 206 DNAN 209
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 241 WAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRID 300
+ E+ + GG + A ++RLG + A ++G D GQ +L + N+ +S++ D
Sbjct: 33 YPLERIAXTTGGDAINEATIISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQD 92
Query: 301 AKRPTAVS 308
T+++
Sbjct: 93 VSIDTSIN 100
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 19/215 (8%)
Query: 245 KFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRP 304
KF GG + + ARLG + + K+G D +G + + N++ T
Sbjct: 55 KFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAA 114
Query: 305 TAVSQMKIGKRGRLRMTCVKPCAEDALTKSE---INIDVLKEAKMFYFSTHSMLERNMKS 361
T + + + G+ + V + L +E +V+ AK+ LE +
Sbjct: 115 TGTASIIVNNEGQNIIVIVA--GANLLLNTEDLRAAANVISRAKVMV----CQLEIT-PA 167
Query: 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421
T+L+A+ ++++ G ++ P P + Q +TL+DV + E E L G+
Sbjct: 168 TSLEALTMARRSGVKTLFN---PAPAIADLDP------QFYTLSDVFCCNESEAEILTGL 218
Query: 422 KPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVL 456
D A VI L E VL
Sbjct: 219 TVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVL 253
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 221 GRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDD 277
GR + +L+ +H+ L + + GG G+ A A+ LGG+VA +G G D
Sbjct: 29 GRFSEQLLPEHLHKVSLSFL--VDDLVMHRGGVAGNMAFAIGVLGGEVALVGAAGAD 83
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 248 RSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRI 299
R GGC G+ A AL LGG MG LG + Q L M+ + VR+
Sbjct: 44 REFGGCAGNIAYALNLLGGDARMMGTLGAVD-AQPYLDRMDALGLSREYVRV 94
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 248 RSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRI 299
R GGC G+ A AL LGG MG LG + Q L M+ + VR+
Sbjct: 52 REFGGCAGNIAYALNLLGGDARMMGTLGAVD-AQPYLDRMDALGLSREYVRV 102
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 261 LARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRM 320
L R G +MG +GDD GQ + + + TR + + T V + I ++ R
Sbjct: 101 LLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATR-FMVAPGQSTGVCAVLINEKERTLC 159
Query: 321 TCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGI--IF 378
T + C L + A +FY + ++ + +T A++++ GI
Sbjct: 160 THLGACGSFRLPEDWTTFA--SGALIFYATAYT-----LTATPKNALEVAGYAHGIPNAI 212
Query: 379 YDVNLPLPL 387
+ +NL P
Sbjct: 213 FTLNLSAPF 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,465,510
Number of Sequences: 62578
Number of extensions: 680154
Number of successful extensions: 1638
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1601
Number of HSP's gapped (non-prelim): 43
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)