Query 008161
Match_columns 575
No_of_seqs 297 out of 2047
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 20:15:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02967 kinase 100.0 1.2E-96 3E-101 808.7 45.1 560 1-575 1-567 (581)
2 PLN02543 pfkB-type carbohydrat 100.0 4.5E-59 9.8E-64 507.4 39.3 363 192-555 113-489 (496)
3 PLN02323 probable fructokinase 100.0 2.4E-44 5.2E-49 377.1 34.7 320 202-556 8-328 (330)
4 KOG2855 Ribokinase [Carbohydra 100.0 1.3E-44 2.9E-49 367.7 28.8 322 197-555 2-326 (330)
5 PRK11142 ribokinase; Provision 100.0 2.7E-42 5.9E-47 356.9 32.6 301 204-554 2-304 (306)
6 PLN02813 pfkB-type carbohydrat 100.0 4.5E-42 9.7E-47 371.2 34.4 324 202-561 67-413 (426)
7 PTZ00292 ribokinase; Provision 100.0 8.8E-42 1.9E-46 357.0 33.3 308 202-554 13-325 (326)
8 PRK09434 aminoimidazole ribosi 100.0 1.8E-41 3.9E-46 350.9 32.8 301 204-550 2-304 (304)
9 PLN02341 pfkB-type carbohydrat 100.0 4.1E-41 8.8E-46 368.4 34.1 321 202-557 70-411 (470)
10 COG0524 RbsK Sugar kinases, ri 100.0 9.5E-41 2.1E-45 346.6 33.9 309 206-555 1-309 (311)
11 cd01168 adenosine_kinase Adeno 100.0 3.7E-41 8E-46 350.0 29.8 300 204-541 1-311 (312)
12 cd01167 bac_FRK Fructokinases 100.0 2.4E-40 5.2E-45 340.2 31.4 287 206-539 1-294 (295)
13 cd01174 ribokinase Ribokinase 100.0 3.3E-40 7.2E-45 338.7 32.1 290 206-545 1-292 (292)
14 PRK15074 inosine/guanosine kin 100.0 2.3E-40 5E-45 356.6 32.2 322 202-548 31-425 (434)
15 PRK09850 pseudouridine kinase; 100.0 6E-40 1.3E-44 341.5 32.2 305 202-556 2-309 (313)
16 cd01944 YegV_kinase_like YegV- 100.0 1.8E-39 4E-44 333.4 31.6 287 206-538 1-289 (289)
17 PLN02379 pfkB-type carbohydrat 100.0 2.1E-39 4.6E-44 344.6 32.3 316 202-553 17-355 (367)
18 PTZ00247 adenosine kinase; Pro 100.0 1.4E-39 2.9E-44 343.5 30.5 308 202-540 3-335 (345)
19 cd01166 KdgK 2-keto-3-deoxyglu 100.0 2.4E-39 5.2E-44 332.3 31.2 291 206-539 1-293 (294)
20 PF00294 PfkB: pfkB family car 100.0 4.8E-40 1E-44 338.1 23.1 298 204-545 1-300 (301)
21 cd01945 ribokinase_group_B Rib 100.0 2E-38 4.4E-43 324.4 30.2 283 206-545 1-284 (284)
22 cd01942 ribokinase_group_A Rib 100.0 2.6E-38 5.7E-43 322.5 30.1 275 206-539 1-278 (279)
23 TIGR02152 D_ribokin_bact ribok 100.0 1.5E-37 3.3E-42 319.5 31.7 291 211-550 1-293 (293)
24 PRK09954 putative kinase; Prov 100.0 2.2E-37 4.8E-42 328.8 32.2 301 203-553 56-359 (362)
25 cd01940 Fructoselysine_kinase_ 100.0 3.4E-37 7.4E-42 312.3 28.9 262 206-539 1-263 (264)
26 TIGR02198 rfaE_dom_I rfaE bifu 100.0 3.8E-36 8.2E-41 312.5 31.9 300 204-553 7-314 (315)
27 cd01172 RfaE_like RfaE encodes 100.0 2.1E-36 4.5E-41 312.6 29.0 290 206-543 1-298 (304)
28 TIGR03828 pfkB 1-phosphofructo 100.0 4.7E-36 1E-40 309.9 31.6 291 209-554 4-300 (304)
29 cd01939 Ketohexokinase Ketohex 100.0 2.1E-36 4.5E-41 311.2 28.0 278 206-539 1-289 (290)
30 cd01947 Guanosine_kinase_like 100.0 5.8E-36 1.2E-40 303.7 29.6 264 206-539 1-264 (265)
31 PLN02548 adenosine kinase 100.0 1.1E-35 2.5E-40 311.7 29.4 302 210-541 1-325 (332)
32 cd01943 MAK32 MAK32 kinase. M 100.0 2.3E-36 4.9E-41 317.0 23.8 297 206-553 1-316 (328)
33 cd01941 YeiC_kinase_like YeiC- 100.0 1.6E-35 3.5E-40 303.3 28.6 282 206-535 1-287 (288)
34 PRK09813 fructoselysine 6-kina 100.0 1.2E-35 2.5E-40 301.1 26.9 259 205-539 1-259 (260)
35 PRK13508 tagatose-6-phosphate 100.0 8.3E-35 1.8E-39 302.3 31.5 294 207-554 3-302 (309)
36 PRK09513 fruK 1-phosphofructok 100.0 2.2E-34 4.9E-39 299.4 32.9 293 207-554 5-304 (312)
37 TIGR03168 1-PFK hexose kinase, 100.0 1.9E-34 4.1E-39 298.3 30.3 289 212-555 7-301 (303)
38 PRK10294 6-phosphofructokinase 100.0 2.7E-34 5.9E-39 298.4 30.8 294 208-554 6-305 (309)
39 TIGR01231 lacC tagatose-6-phos 100.0 3.4E-34 7.4E-39 297.6 30.7 291 211-554 6-302 (309)
40 PRK11316 bifunctional heptose 100.0 6.7E-34 1.4E-38 312.5 31.5 300 204-555 10-314 (473)
41 cd01164 FruK_PfkB_like 1-phosp 100.0 8.3E-34 1.8E-38 291.6 29.6 279 207-539 3-288 (289)
42 PLN02630 pfkB-type carbohydrat 100.0 4.4E-32 9.5E-37 284.7 29.0 271 203-555 10-291 (335)
43 cd01937 ribokinase_group_D Rib 100.0 3.9E-32 8.4E-37 273.9 26.4 254 206-535 1-254 (254)
44 cd01946 ribokinase_group_C Rib 100.0 3.9E-32 8.4E-37 277.7 26.4 273 207-540 2-276 (277)
45 COG1105 FruK Fructose-1-phosph 100.0 9.1E-31 2E-35 266.6 28.8 270 241-555 26-303 (310)
46 KOG2854 Possible pfkB family c 100.0 2.5E-31 5.4E-36 267.6 23.0 312 207-545 9-338 (343)
47 COG2870 RfaE ADP-heptose synth 100.0 3.5E-27 7.6E-32 242.0 24.1 305 203-561 9-319 (467)
48 KOG2947 Carbohydrate kinase [C 99.9 4E-25 8.8E-30 212.9 21.8 280 203-539 3-298 (308)
49 cd00287 ribokinase_pfkB_like r 99.9 4.2E-25 9E-30 213.0 21.1 195 206-507 1-196 (196)
50 cd01173 pyridoxal_pyridoxamine 99.7 1.6E-16 3.4E-21 160.7 18.2 169 342-535 71-250 (254)
51 PRK12413 phosphomethylpyrimidi 99.7 6E-16 1.3E-20 156.5 19.2 226 268-536 4-242 (253)
52 PRK05756 pyridoxamine kinase; 99.7 4E-16 8.7E-21 160.8 17.9 170 341-536 72-255 (286)
53 TIGR00687 pyridox_kin pyridoxa 99.7 1.3E-15 2.8E-20 156.9 17.4 165 341-531 72-251 (286)
54 PRK07105 pyridoxamine kinase; 99.7 1.5E-15 3.2E-20 156.5 17.4 175 343-539 75-258 (284)
55 TIGR00097 HMP-P_kinase phospho 99.6 6.6E-15 1.4E-19 149.2 18.8 164 343-536 67-240 (254)
56 cd01169 HMPP_kinase 4-amino-5- 99.6 8.3E-15 1.8E-19 146.8 19.2 164 343-535 68-240 (242)
57 PRK08176 pdxK pyridoxal-pyrido 99.6 4.8E-15 1E-19 152.5 17.9 168 341-535 86-265 (281)
58 PRK12412 pyridoxal kinase; Rev 99.6 7.1E-15 1.5E-19 150.2 17.9 164 344-536 73-246 (268)
59 PRK06427 bifunctional hydroxy- 99.6 9E-15 2E-19 149.0 18.3 165 343-536 73-248 (266)
60 KOG3009 Predicted carbohydrate 99.6 5.3E-15 1.1E-19 154.0 13.8 253 206-536 342-600 (614)
61 PRK08573 phosphomethylpyrimidi 99.6 1.6E-14 3.5E-19 157.8 17.8 152 359-535 82-243 (448)
62 PRK12616 pyridoxal kinase; Rev 99.6 1.5E-13 3.2E-18 140.6 18.2 165 343-536 74-249 (270)
63 PTZ00344 pyridoxal kinase; Pro 99.4 1.1E-11 2.3E-16 128.7 18.3 167 344-536 78-258 (296)
64 PTZ00347 phosphomethylpyrimidi 99.3 2.3E-11 5E-16 135.1 17.6 151 360-536 311-478 (504)
65 PLN02898 HMP-P kinase/thiamin- 99.3 3.4E-11 7.4E-16 133.7 18.8 164 343-536 78-253 (502)
66 PLN02978 pyridoxal kinase 99.3 6.2E-11 1.3E-15 123.6 18.8 166 344-536 87-267 (308)
67 PF08543 Phos_pyr_kin: Phospho 99.2 1.4E-10 3E-15 117.2 14.7 164 343-535 60-233 (246)
68 cd01171 YXKO-related B.subtili 99.2 2.3E-10 5E-15 115.9 16.3 164 340-538 74-237 (254)
69 PRK14713 multifunctional hydro 99.2 2E-10 4.2E-15 128.4 17.2 157 344-530 99-266 (530)
70 PRK09517 multifunctional thiam 99.2 2.8E-10 6E-15 131.9 15.9 162 344-536 311-484 (755)
71 COG2240 PdxK Pyridoxal/pyridox 99.2 9.6E-10 2.1E-14 111.0 16.3 172 339-535 69-249 (281)
72 cd01170 THZ_kinase 4-methyl-5- 99.1 2E-09 4.3E-14 108.5 17.7 174 338-534 44-220 (242)
73 TIGR00196 yjeF_cterm yjeF C-te 99.1 3.3E-09 7.1E-14 108.7 18.1 175 339-553 88-266 (272)
74 COG0351 ThiD Hydroxymethylpyri 99.1 3.1E-09 6.7E-14 106.8 16.2 152 359-535 83-244 (263)
75 PTZ00493 phosphomethylpyrimidi 98.7 4.6E-07 1E-11 94.5 17.5 140 376-536 107-285 (321)
76 PRK09355 hydroxyethylthiazole 98.7 6E-07 1.3E-11 91.7 17.6 173 338-534 49-224 (263)
77 TIGR00694 thiM hydroxyethylthi 98.5 3.8E-06 8.3E-11 85.1 15.9 172 338-533 44-218 (249)
78 KOG2599 Pyridoxal/pyridoxine/p 98.3 1.4E-05 3.1E-10 79.6 14.8 167 340-529 78-256 (308)
79 PRK03979 ADP-specific phosphof 97.7 0.0023 5E-08 69.7 18.4 164 247-420 98-306 (463)
80 KOG2598 Phosphomethylpyrimidin 97.6 0.00086 1.9E-08 71.1 13.6 171 343-535 92-282 (523)
81 PRK14039 ADP-dependent glucoki 97.6 0.0039 8.5E-08 67.8 18.4 168 245-421 85-295 (453)
82 TIGR02045 P_fruct_ADP ADP-spec 97.6 0.0039 8.5E-08 67.7 18.2 163 248-419 86-291 (446)
83 PF04587 ADP_PFK_GK: ADP-speci 97.4 0.0051 1.1E-07 67.5 16.1 163 249-420 93-292 (444)
84 PF02110 HK: Hydroxyethylthiaz 97.1 0.043 9.4E-07 55.4 18.0 155 338-509 44-201 (246)
85 PRK14038 ADP-dependent glucoki 97.0 0.085 1.8E-06 57.6 20.7 165 247-420 106-300 (453)
86 PRK10565 putative carbohydrate 97.0 0.023 5E-07 63.5 16.8 150 340-529 317-468 (508)
87 COG2145 ThiM Hydroxyethylthiaz 96.5 0.14 3.1E-06 51.6 16.1 155 338-509 50-207 (265)
88 PF01256 Carb_kinase: Carbohyd 96.2 0.13 2.9E-06 51.9 14.4 152 339-531 63-217 (242)
89 cd01938 ADPGK_ADPPFK ADP-depen 96.1 0.044 9.5E-07 60.0 11.6 167 245-420 100-286 (445)
90 KOG3974 Predicted sugar kinase 96.1 0.067 1.5E-06 53.7 11.7 170 338-536 96-267 (306)
91 COG0063 Predicted sugar kinase 93.8 1.9 4.1E-05 44.7 14.8 154 341-529 99-253 (284)
92 COG4809 Archaeal ADP-dependent 82.7 34 0.00074 36.8 14.1 80 339-422 221-310 (466)
93 PLN02967 kinase 82.7 1.5 3.2E-05 49.8 4.6 33 268-302 236-268 (581)
94 PRK10076 pyruvate formate lyas 77.9 15 0.00033 36.3 9.5 67 345-422 40-112 (213)
95 KOG4184 Predicted sugar kinase 71.7 7.7 0.00017 40.9 5.6 165 244-421 136-318 (478)
96 PF03154 Atrophin-1: Atrophin- 66.6 9.2 0.0002 45.3 5.5 48 80-129 18-70 (982)
97 KOG1832 HIV-1 Vpr-binding prot 61.3 4.5 9.8E-05 47.3 1.7 7 59-65 1276-1282(1516)
98 PRK06702 O-acetylhomoserine am 57.7 61 0.0013 35.7 9.7 125 245-412 78-206 (432)
99 PLN02543 pfkB-type carbohydrat 55.7 13 0.00029 41.6 4.2 32 53-90 47-78 (496)
100 TIGR00334 5S_RNA_mat_M5 ribonu 54.8 44 0.00096 32.1 7.0 64 343-416 22-85 (174)
101 COG0136 Asd Aspartate-semialde 49.4 3.5E+02 0.0076 28.8 14.2 94 266-382 2-97 (334)
102 PF01118 Semialdhyde_dh: Semia 47.7 43 0.00093 29.6 5.5 96 271-385 2-100 (121)
103 COG1180 PflA Pyruvate-formate 46.2 1.8E+02 0.004 29.6 10.5 70 343-423 83-158 (260)
104 KOG2141 Protein involved in hi 45.6 8.1 0.00018 44.3 0.5 23 133-155 185-207 (822)
105 TIGR03609 S_layer_CsaB polysac 43.1 1.2E+02 0.0027 31.0 8.9 73 338-412 59-135 (298)
106 PRK05967 cystathionine beta-ly 43.0 1.9E+02 0.0042 31.4 10.6 44 343-387 149-192 (395)
107 PF10278 Med19: Mediator of RN 42.8 15 0.00032 35.3 1.7 15 23-37 80-94 (178)
108 KOG3226 DNA repair protein [Re 41.5 55 0.0012 34.9 5.7 50 3-52 141-197 (508)
109 PRK09028 cystathionine beta-ly 41.4 1.6E+02 0.0035 31.9 9.7 43 343-386 146-188 (394)
110 COG2873 MET17 O-acetylhomoseri 41.4 1.2E+02 0.0027 32.7 8.3 113 258-412 94-206 (426)
111 PRK15447 putative protease; Pr 37.7 4.1E+02 0.0089 27.6 11.8 73 343-419 28-104 (301)
112 PRK15452 putative protease; Pr 36.8 2.1E+02 0.0045 31.7 9.8 44 339-382 19-67 (443)
113 PRK05968 hypothetical protein; 36.6 3.7E+02 0.0081 28.8 11.7 42 342-384 146-187 (389)
114 PRK08133 O-succinylhomoserine 36.0 1.9E+02 0.0042 31.1 9.3 22 363-384 165-186 (390)
115 PRK07050 cystathionine beta-ly 35.5 3E+02 0.0065 29.7 10.7 108 243-386 80-192 (394)
116 PRK08114 cystathionine beta-ly 33.9 2.2E+02 0.0047 31.0 9.2 108 244-387 78-192 (395)
117 PF09026 CENP-B_dimeris: Centr 32.8 15 0.00032 31.6 0.0 7 207-213 43-49 (101)
118 TIGR01328 met_gam_lyase methio 32.7 2.4E+02 0.0053 30.3 9.4 41 343-384 144-184 (391)
119 TIGR01324 cysta_beta_ly_B cyst 32.3 3.7E+02 0.0079 28.9 10.7 43 343-386 135-177 (377)
120 COG0626 MetC Cystathionine bet 31.8 1.9E+02 0.0042 31.5 8.4 107 244-388 79-193 (396)
121 COG0826 Collagenase and relate 31.8 3.2E+02 0.0069 29.2 9.9 79 342-421 25-109 (347)
122 TIGR02494 PFLE_PFLC glycyl-rad 30.6 3.2E+02 0.007 27.9 9.6 66 345-421 127-198 (295)
123 PRK07810 O-succinylhomoserine 30.2 3.7E+02 0.008 29.1 10.4 43 343-386 155-197 (403)
124 PRK08134 O-acetylhomoserine am 30.1 2.2E+02 0.0048 31.2 8.7 41 363-412 168-208 (433)
125 TIGR02826 RNR_activ_nrdG3 anae 30.0 1.7E+02 0.0038 27.1 6.7 58 345-415 63-120 (147)
126 PF05077 DUF678: Protein of un 29.7 23 0.0005 28.8 0.7 12 143-154 7-18 (74)
127 PRK09522 bifunctional glutamin 28.9 4E+02 0.0086 30.2 10.5 36 257-294 293-329 (531)
128 cd00614 CGS_like CGS_like: Cys 28.8 2.9E+02 0.0064 29.3 9.2 43 343-386 125-167 (369)
129 PRK08248 O-acetylhomoserine am 28.8 3E+02 0.0065 30.2 9.4 41 343-384 149-189 (431)
130 PRK05613 O-acetylhomoserine am 28.5 3.4E+02 0.0073 29.9 9.7 41 363-412 174-214 (437)
131 PRK08249 cystathionine gamma-s 27.7 3.1E+02 0.0066 29.7 9.2 43 343-386 149-191 (398)
132 PHA00438 hypothetical protein 27.4 45 0.00098 27.5 1.9 17 492-508 47-63 (81)
133 TIGR01329 cysta_beta_ly_E cyst 26.4 3.6E+02 0.0078 28.9 9.4 41 343-384 131-171 (378)
134 KOG1015 Transcription regulato 25.7 45 0.00098 40.0 2.3 15 542-556 1151-1165(1567)
135 PF10087 DUF2325: Uncharacteri 25.6 1.3E+02 0.0029 25.4 4.7 40 338-381 43-82 (97)
136 KOG0053 Cystathionine beta-lya 25.4 3E+02 0.0065 30.1 8.3 41 344-387 163-205 (409)
137 PF00919 UPF0004: Uncharacteri 24.8 3.3E+02 0.0072 23.3 7.1 61 341-409 34-97 (98)
138 COG0206 FtsZ Cell division GTP 24.6 5.4E+02 0.012 27.4 10.0 153 245-417 14-172 (338)
139 KOG1015 Transcription regulato 24.4 76 0.0016 38.2 3.8 29 127-155 457-488 (1567)
140 TIGR03576 pyridox_MJ0158 pyrid 24.4 5.5E+02 0.012 27.1 10.2 40 343-382 136-176 (346)
141 cd00757 ThiF_MoeB_HesA_family 24.4 5.8E+02 0.012 25.1 9.8 24 244-267 23-46 (228)
142 PRK07582 cystathionine gamma-l 24.3 3.3E+02 0.0072 28.9 8.6 21 363-383 151-171 (366)
143 PRK08247 cystathionine gamma-s 23.9 6.3E+02 0.014 26.7 10.6 41 343-384 136-176 (366)
144 PRK05994 O-acetylhomoserine am 23.0 4.9E+02 0.011 28.4 9.7 41 343-384 148-188 (427)
145 PRK08574 cystathionine gamma-s 22.9 6.7E+02 0.014 26.9 10.6 43 343-386 137-179 (385)
146 PF01212 Beta_elim_lyase: Beta 22.7 74 0.0016 33.0 3.1 80 329-411 104-192 (290)
147 COG0373 HemA Glutamyl-tRNA red 22.6 2.3E+02 0.0049 31.1 6.8 128 264-419 173-301 (414)
148 PRK05939 hypothetical protein; 22.5 7.7E+02 0.017 26.6 11.1 41 343-384 131-171 (397)
149 PRK05973 replicative DNA helic 22.4 6.5E+02 0.014 25.3 9.7 104 254-382 81-191 (237)
150 PRK06444 prephenate dehydrogen 22.3 2.7E+02 0.0059 27.2 6.8 25 268-294 3-27 (197)
151 PF10911 DUF2717: Protein of u 22.2 84 0.0018 25.9 2.6 19 491-509 46-64 (77)
152 cd00562 NifX_NifB This CD repr 22.1 1.4E+02 0.0031 24.9 4.3 39 251-294 47-85 (102)
153 PF08070 DTHCT: DTHCT (NUC029) 21.7 1.2E+02 0.0027 26.2 3.7 8 145-152 58-65 (96)
154 KOG2422 Uncharacterized conser 21.6 64 0.0014 36.6 2.4 7 376-382 368-374 (665)
155 PLN02383 aspartate semialdehyd 21.5 3.1E+02 0.0068 29.2 7.6 98 263-384 5-102 (344)
156 TIGR01745 asd_gamma aspartate- 21.3 1E+03 0.023 25.6 12.9 94 267-383 2-98 (366)
157 KOG0943 Predicted ubiquitin-pr 21.3 1E+02 0.0023 37.9 4.1 14 489-502 2106-2119(3015)
158 COG0269 SgbH 3-hexulose-6-phos 21.3 8.3E+02 0.018 24.4 10.1 93 341-461 78-172 (217)
159 PF00070 Pyr_redox: Pyridine n 21.1 1.5E+02 0.0033 23.7 4.1 42 254-295 11-58 (80)
160 KOG2393 Transcription initiati 21.1 88 0.0019 35.0 3.3 21 134-154 259-279 (555)
161 PRK14874 aspartate-semialdehyd 21.0 5E+02 0.011 27.3 9.1 92 266-384 2-96 (334)
162 TIGR01093 aroD 3-dehydroquinat 21.0 8.1E+02 0.017 24.1 10.2 61 344-410 93-154 (228)
163 PRK11145 pflA pyruvate formate 20.9 4.5E+02 0.0098 26.0 8.3 58 346-412 73-131 (246)
164 PF12770 CHAT: CHAT domain 20.4 5.3E+02 0.011 25.8 8.9 56 443-532 213-268 (287)
165 PRK06598 aspartate-semialdehyd 20.1 4.1E+02 0.0088 28.7 8.1 94 267-383 3-99 (369)
166 COG1646 Predicted phosphate-bi 20.1 2.9E+02 0.0063 27.9 6.4 43 340-385 38-81 (240)
167 TIGR02355 moeB molybdopterin s 20.1 7.4E+02 0.016 24.8 9.6 32 244-277 26-57 (240)
168 KOG2897 DNA-binding protein YL 20.0 52 0.0011 35.1 1.2 7 157-163 47-53 (390)
No 1
>PLN02967 kinase
Probab=100.00 E-value=1.2e-96 Score=808.68 Aligned_cols=560 Identities=71% Similarity=1.137 Sum_probs=495.0
Q ss_pred CCccccccccccccccccCcc---cceeceeEeccccccccchhhHHhhhhhhhh-hccccccCCCcccccccCCCCccc
Q 008161 1 MASLSFAHFLSLPRCHSNWQY---CSSVNLMHAQNFRLHSAKWHLVATSRKKIVQ-ASAQDELSGSEAVVKKRTPLTTKR 76 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (575)
|++|+|+|||++||||.+||+ |..+|+++.+.+|+| +||.+.|.+|||++. ..++|++.+|+++++|+ ++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 75 (581)
T PLN02967 1 MASLSFTQFLSFPRCNADVPCLLQSLGFNKFRGERWRLQ-NKFLLAAGSRKKIESALAVDEEPDENGAVSKKK----PTR 75 (581)
T ss_pred CCcccchhhhcCCCCcCCCchhhhhhhhhhhhhhhhhhh-hHHHhhhhhhhhcccccccccCCcccCceeccC----Ccc
Confidence 899999999999999999995 677888899999999 999999999999999 88888899999999999 999
Q ss_pred ccccccccccc---CCCcccccccccccccCccccccccCCCCCCCcccccccccccCCccchhhhhhhhhhcccccccc
Q 008161 77 ATFKQTRKKSE---TDALDENSDLELSRDASDEESIVASSSKDTKKTPRMTRRKAASASTGMEEEKTEKKVRRRRKTTKK 153 (575)
Q Consensus 77 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (575)
+|+| +|||++ ++.++++++++|+.|+. ....+||++||||||||+||++++|+++|||+|+|||+|++
T Consensus 76 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (581)
T PLN02967 76 SVKR-ATKKTVVEISEPLEEGSELVVNEDAA--------LDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKM 146 (581)
T ss_pred cccc-ccCCcceeccCCccccceEEecCccc--------cccccccCcchhhhhhhhcccchhhhhcchhhhhcccccch
Confidence 9999 999885 67888999999999865 34467999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCccCChhhhccccccccccccccccccCCCcccccccCCCCcEEEEccceeeeeccCCCCCCcchhhhh
Q 008161 154 IGDETEDQGNESEISDVEEYTFINIVDDESKGEIELEKDDGEDISFTYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIH 233 (575)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~ 233 (575)
+ +..||++.+++.++.++..+....++|++.|.+++++++|+|+++|++++.|+|||+++||+++.+.+..++..+++|
T Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~ 225 (581)
T PLN02967 147 D-EDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGEDISHTYGWPPLVCCFGAAQHAFVPSGRPANRLLDYEIH 225 (581)
T ss_pred h-hcccccccccccccchhccccccccccccccccccccccccccCcCCCCCeEEEECchhheecccCccchhhhhcccc
Confidence 8 567788889999999999999999999999999999999999999999999999999999999877666678888889
Q ss_pred hhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEc
Q 008161 234 ERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG 313 (575)
Q Consensus 234 ~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd 313 (575)
.++.+..|++..+...+||+++|+|++|++||.++.|||.||+|.+|+++++.|+..||+++++.+.++.+|+++++.++
T Consensus 226 ~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd 305 (581)
T PLN02967 226 ERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIA 305 (581)
T ss_pred ccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEEC
Confidence 88999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred CCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhH
Q 008161 314 KRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEE 393 (575)
Q Consensus 314 ~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~ 393 (575)
.+|++++.+..++++..+.+++++...+..+++||++++.++++.....+..+++.|+++|++|+||+|++.++|.+...
T Consensus 306 ~~Gerr~~~~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~ 385 (581)
T PLN02967 306 KRGRLKTTCVKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEE 385 (581)
T ss_pred CCCceEEEEecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHH
Confidence 99998876667888888988888877889999999999877666678899999999999999999999999999976666
Q ss_pred HHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCC
Q 008161 394 TKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD 473 (575)
Q Consensus 394 ~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~ 473 (575)
+.+.+.++++++|||++|++|+..|+|.......+...+....+.+..++.+..++..|++.||||+|++|++++.++..
T Consensus 386 ~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~ 465 (581)
T PLN02967 386 TKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHN 465 (581)
T ss_pred HHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECccceEEEECCCc
Confidence 67778899999999999999999999864321111111122334444456677787889999999999999999987655
Q ss_pred eeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhh
Q 008161 474 GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEV 553 (575)
Q Consensus 474 ~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l 553 (575)
..++.++.+++.+.+||||||||+|+|||+++|+.++.+..+..++++|++||+++||++|+..|+..++|++++|++..
T Consensus 466 ~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~~~ 545 (581)
T PLN02967 466 GAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMEDEV 545 (581)
T ss_pred eeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhhhc
Confidence 55665554556543699999999999999999998532222226799999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccCCCCC
Q 008161 554 EPDPYGIRSMTEKEYRTLKPVS 575 (575)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~ 575 (575)
+.+|+|||+|||||||||||++
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~ 567 (581)
T PLN02967 546 EPDPNGIRSITEKEYRTLEPYS 567 (581)
T ss_pred cCCccccchhhhhhhccCCCcc
Confidence 9999999999999999999864
No 2
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.5e-59 Score=507.45 Aligned_cols=363 Identities=45% Similarity=0.814 Sum_probs=291.0
Q ss_pred CCCcccccccCCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEE
Q 008161 192 DDGEDISFTYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFM 271 (575)
Q Consensus 192 ~~~~~i~~~~~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lv 271 (575)
|..++|+|||.|++.|||||+++||+++.......-..+++|..+...-|.+..+...+||+++|+|++|+|||.++.|+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafI 192 (496)
T PLN02543 113 DYDDGIDFPYDDPPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFM 192 (496)
T ss_pred cccccccccCCCCCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEE
Confidence 44457999999999999999999999987532112223456777777778888999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEc--CCCCeEEE-EecCCccccCCccccchhhhccCcEEE
Q 008161 272 GKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG--KRGRLRMT-CVKPCAEDALTKSEINIDVLKEAKMFY 348 (575)
Q Consensus 272 g~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd--~~Ger~~~-~~~~ga~~~lt~e~i~~~~l~~ad~v~ 348 (575)
|.||+|.+|+++++.|++.||+++++.+.++.+|+++++.++ .+| +.+. ++.++++..+.+++++...+..+++||
T Consensus 193 G~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh 271 (496)
T PLN02543 193 GKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVLKEARMFH 271 (496)
T ss_pred EEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHhCCCceEE
Confidence 999999999999999999999999999988889999999884 445 5554 355677778888888888899999999
Q ss_pred EecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccc
Q 008161 349 FSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFD 428 (575)
Q Consensus 349 ~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d 428 (575)
++++.+.++...+.+.++++.|+++|++|+||+|++.++|.+.+...+.+..+++++|||++|++|++.|+|........
T Consensus 272 ~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~ 351 (496)
T PLN02543 272 FNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKR 351 (496)
T ss_pred ECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccc
Confidence 99987766666788999999999999999999999999998777777888899999999999999999999864210000
Q ss_pred --ccc---------cccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHH
Q 008161 429 --TKN---------NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDG 497 (575)
Q Consensus 429 --~~~---------~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDa 497 (575)
... .....+.+..++.+..++..|++.||||+|++|+++++++..+.++.+....+++.+||||||||+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDTTGAGDA 431 (496)
T PLN02543 352 NYPPQYYAESFEQTKNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDRTGSGDA 431 (496)
T ss_pred cccchhhhhhhhhhhcccccccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCCCchHHH
Confidence 000 000011122345667788889999999999999999987544444332211122225899999999
Q ss_pred HHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 498 IVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 498 F~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
|+|||+++|+.++.+..+..++++|++||+++||++|+..|+..++|++++|++|+++
T Consensus 432 F~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~ 489 (496)
T PLN02543 432 VVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQ 489 (496)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHh
Confidence 9999999999642222223789999999999999999999999999999999999854
No 3
>PLN02323 probable fructokinase
Probab=100.00 E-value=2.4e-44 Score=377.10 Aligned_cols=320 Identities=32% Similarity=0.592 Sum_probs=261.6
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
.+.++|++||++++|+++... ++|. .....+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 8 ~~~~~i~~iG~~~vD~~~~~~---~~~~-----------~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~ 73 (330)
T PLN02323 8 AESSLVVCFGEMLIDFVPTVS---GVSL-----------AEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGH 73 (330)
T ss_pred CCCCcEEEechhhhhhccCCC---CCCc-----------ccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHH
Confidence 456789999999999997542 2221 01356678999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEec-CCccccCCccccchhhhccCcEEEEecccccccchH
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVK-PCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~-~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
++++.|++.||+++++.+.++.+|+++++.++.+|+|++.+.. .++...+++++++...+..++++|++++.++.+...
T Consensus 74 ~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (330)
T PLN02323 74 MLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYGSISLITEPCR 153 (330)
T ss_pred HHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEechhccCchHH
Confidence 9999999999999999888888999999999888998876433 455556778888777888999999998765544445
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
..+..+++.+++.|++|+||++++..+|.+.....+.+.++++++|++++|+.|+..++|.....
T Consensus 154 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~--------------- 218 (330)
T PLN02323 154 SAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPD--------------- 218 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCcc---------------
Confidence 66778899999999999999998888886555566778889999999999999999999864321
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.+.+.+++..|++.||||+|++|++++.++...++++ ++++ ++|||||||+|+|||+++|++|.....+..+++
T Consensus 219 -~~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~ 292 (330)
T PLN02323 219 -DDTVVKLWHPNLKLLLVTEGEEGCRYYTKDFKGRVEG---FKVK--AVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLR 292 (330)
T ss_pred -HHHHHHHHhcCCCEEEEecCCCceEEEeCCCceEeCC---ccCC--CCCCCCcHHHHHHHHHHHHHcCCccccchHHHH
Confidence 1223355567899999999999999998875555554 3444 899999999999999999999821111122499
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCC
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPD 556 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~ 556 (575)
+|+++|+++|+++|++.|+..++|++++|+++++++
T Consensus 293 ~al~~a~a~Aa~~v~~~g~~~~~~~~~~v~~~l~~~ 328 (330)
T PLN02323 293 EALRFANACGAITTTERGAIPALPTKEAVLKLLKKA 328 (330)
T ss_pred HHHHHHHHHHHHHHhccCCccCCCCHHHHHHHHHHh
Confidence 999999999999999999988899999999998653
No 4
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=367.69 Aligned_cols=322 Identities=38% Similarity=0.648 Sum_probs=277.7
Q ss_pred cccccCCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCC
Q 008161 197 ISFTYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGD 276 (575)
Q Consensus 197 i~~~~~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~ 276 (575)
++.++.+++.|+|+|++++|+++.++ ++|.. ...|.+..+...+||+++|+|++++|||.++.|||.||+
T Consensus 2 ~~~~~~~~~~vv~fGs~~~D~V~~~~---~~p~~-------ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGd 71 (330)
T KOG2855|consen 2 ISAVYGEPPLVVVFGSMLIDFVPSTR---RLPNA-------GETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGD 71 (330)
T ss_pred ccccccCCceEEEeccceeeeeeccc---cCCCc-------cccccCCcceecCCCcchhhhhHHHhcCcceeeeecccc
Confidence 56788999999999999999999874 45531 125677899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCC--ccccchhhhccCcEEEEecccc
Q 008161 277 DEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALT--KSEINIDVLKEAKMFYFSTHSM 354 (575)
Q Consensus 277 D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt--~e~i~~~~l~~ad~v~~sg~~l 354 (575)
|.||..+++.|+.+||+++++..+.+.+|+++.+.+..+|++.+.+.. +++..+. +.+++.+.++.+++||+.+..+
T Consensus 72 D~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~-gan~~~~~~~se~~~~~i~~ak~~~~q~ei~ 150 (330)
T KOG2855|consen 72 DEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVR-GANADMLPEDSELNLEVIKEAKVFHCQSEIL 150 (330)
T ss_pred hhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEe-cCchhcCcccccccHHHHhhccEEEEeeecC
Confidence 999999999999999999999999999999999999999999887543 4443333 3566788999999999998777
Q ss_pred cccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccc
Q 008161 355 LERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 355 ~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
++..........++.+++.|..+++||+.+.++|......+..+..+|..+|++.++.+|++.++|...+
T Consensus 151 ~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~---------- 220 (330)
T KOG2855|consen 151 IEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDD---------- 220 (330)
T ss_pred CcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCccc----------
Confidence 6666666666667788999999999999999999987777777889999999999999999999988321
Q ss_pred ccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCe-eEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCC
Q 008161 435 SKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDG-AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI 513 (575)
Q Consensus 435 ~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~-~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~ 513 (575)
+.. +|++.+.+.||||+|++||.||+++... +++. ..|+ +||||||||+|+|||+.+|.+| .+.
T Consensus 221 --------~~~-~L~~~~~k~viVTlG~kG~~y~tk~~~~~~v~~---~~V~--~VDtTGAGDsFvgal~~~L~~~-~~~ 285 (330)
T KOG2855|consen 221 --------KIL-KLWHMKLKLVIVTLGEKGCRYYTKDFKGSHVPA---FKVK--AVDTTGAGDSFVGALAVQLVRG-SLL 285 (330)
T ss_pred --------hHH-HHhccCCCEEEEEeCCCceEEEecCCCCCCCCC---cccc--cccCCCchHHHHHHHHHHHhhc-ccc
Confidence 223 8999989999999999999999999776 5544 3455 8999999999999999999998 333
Q ss_pred CCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 514 TDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 514 ~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
. ...|++++++|++||+++++..|+.+++|+.++++..+..
T Consensus 286 ~-~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~~~~~~~ 326 (330)
T KOG2855|consen 286 P-ELSLEEALRFANACGAITVQRKGAIPSMPTEKEVQSLLKS 326 (330)
T ss_pred c-hHHHHHHHHHHHHhhhHHhhccCCCccCccHHHHHHHhhh
Confidence 2 5679999999999999999999999999999999988754
No 5
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=2.7e-42 Score=356.94 Aligned_cols=301 Identities=20% Similarity=0.275 Sum_probs=247.1
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
|++|+|+|++++|++... +++|.+ ........+...+||+++|+|++|++||.++.++|.||+|.+|+.+
T Consensus 2 m~~i~~iG~~~~D~~~~~---~~~p~~-------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i 71 (306)
T PRK11142 2 MGKLVVLGSINADHVLNL---ESFPRP-------GETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESM 71 (306)
T ss_pred CCcEEEECCceeeEEEEe---CCCCCC-------CCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHH
Confidence 668999999999999765 344421 1112345677889999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||+++++...++.+|++++++++.+|+|++. ...++...+++++++ ...+..++++|+++. ...+
T Consensus 72 ~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~ 145 (306)
T PRK11142 72 RQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIG-IHAGANAALTPALVEAHRELIANADALLMQLE-----TPLE 145 (306)
T ss_pred HHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEE-EeCCccccCCHHHHHHHHhhhccCCEEEEeCC-----CCHH
Confidence 99999999999999888888999999999888998775 456776777777665 256889999999842 2356
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++++||++....+ ...+++++|++++|++|+..++|.......+ .
T Consensus 146 ~~~~~~~~a~~~g~~v~~d~~~~~~~----------~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~------------~ 203 (306)
T PRK11142 146 TVLAAAKIAKQHGTKVILNPAPAREL----------PDELLALVDIITPNETEAEKLTGIRVEDDDD------------A 203 (306)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCccc----------CHHHHhhCCEEcCCHHHHHHHhCCCCCChHH------------H
Confidence 77889999999999999998743322 2457889999999999999999864322111 1
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
.+.++.+...|++.||||+|++|++++.++...++++ ++++ ++|||||||+|+|||+++|++| +++++
T Consensus 204 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvDt~GAGDaF~Agfi~~l~~g-------~~~~~ 271 (306)
T PRK11142 204 AKAAQVLHQKGIETVLITLGSRGVWLSENGEGQRVPG---FRVQ--AVDTIAAGDTFNGALVTALLEG-------KPLPE 271 (306)
T ss_pred HHHHHHHHHhCCCeEEEEECCCcEEEEeCCcceeccC---CCcc--cccCCCchhHHHHHHHHHHHCC-------CCHHH
Confidence 2455667677999999999999999988765444443 3444 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 522 TIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
|+++|+++|+++|++.|+..++|+++++++++.
T Consensus 272 al~~a~~~Aa~~~~~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 272 AIRFAHAAAAIAVTRKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred HHHHHHHHHHHHcCCCcccccCCCHHHHHHHHh
Confidence 999999999999999999888999999998875
No 6
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.5e-42 Score=371.24 Aligned_cols=324 Identities=18% Similarity=0.132 Sum_probs=258.3
Q ss_pred CCCCcEEEEccceeeeeccCCCCCC-------cchh-------hhhhhhcccccCCCceEEecCChHHHHHHHHHHcC--
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANR-------LIDH-------EIHERMKDALWAPEKFIRSPGGCTGSAAIALARLG-- 265 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~-------lp~~-------e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG-- 265 (575)
.+.++|++||++++|++..+. + +|.. +.+..+.+.+ ....+...+||+++|+|++|++||
T Consensus 67 ~~~~~vl~iG~~~vDi~~~v~---~~fl~~~~lp~~~~~~i~~~~~~~l~e~~-~~~~~~~~~GG~~~N~AvalarLG~~ 142 (426)
T PLN02813 67 PERWDVLGLGQAMVDFSGMVD---DEFLERLGLEKGTRKVINHEERGKVLRAL-DGCSYKASAGGSLSNTLVALARLGSQ 142 (426)
T ss_pred CCcceEEEeCCceeEEEEecC---HHHHHHcCCCcCcccccCHHHHHHHHHHh-hccCceEecCcHHHHHHHHHHHhccc
Confidence 566789999999999998763 3 4431 2222333333 245678999999999999999999
Q ss_pred ------CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchh
Q 008161 266 ------GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINID 339 (575)
Q Consensus 266 ------~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~ 339 (575)
.+|.|+|.||+|.+|+++++.|++.||++.++.+ .+.+|++++++++++|+|+++ .+.++...++.+++...
T Consensus 143 ~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~gertii-~~~Ga~~~l~~~~~~~~ 220 (426)
T PLN02813 143 SAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQRTML-SYQGTSSTVNYDSCLAS 220 (426)
T ss_pred cccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCCceee-eccCchhhCCccccCHH
Confidence 7999999999999999999999999999988764 456899999999999998876 45677767777666667
Q ss_pred hhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 340 VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.++.+++||++|+.+..+...+.+.++++.++++|++|+||++...... .........+++++|||++|++|+..|+
T Consensus 221 ~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~---~~~~~l~~~ll~~vDil~~Ne~Ea~~l~ 297 (426)
T PLN02813 221 AISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIE---RHRDDFWDVMGNYADILFANSDEARALC 297 (426)
T ss_pred HHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhh---hhHHHHHHHHHhcCCEEEeCHHHHHHHh
Confidence 8899999999986532233457888999999999999999976322110 0012334456689999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHH
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIV 499 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~ 499 (575)
|....+ ..+.+.+.+..+++.||||+|.+|++++.+++..++++ .+++ +||||||||+|+
T Consensus 298 g~~~~~---------------~~~~a~~~L~~~~~~VVVT~G~~Ga~~~~~~~~~~~pa---~~v~--vVDTtGAGDAF~ 357 (426)
T PLN02813 298 GLGSEE---------------SPESATRYLSHFCPLVSVTDGARGSYIGVKGEAVYIPP---SPCV--PVDTCGAGDAYA 357 (426)
T ss_pred CCCCCC---------------CHHHHHHHHHcCCCEEEEEeCCCCeEEEECCEEEEeCC---CCCC--cccCCChHHHHH
Confidence 864211 12334444557899999999999999988775555554 3454 899999999999
Q ss_pred HHHHHHHHcCCCCCCCch-hHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCCCCcc
Q 008161 500 AGIMRMLTVQPHLITDKG-YLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDPYGIR 561 (575)
Q Consensus 500 AGfl~~L~~g~~~~~d~~-sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~~~~~ 561 (575)
|||+++|++| + ++++|+++|+++|+++|++.|++.++|+++++.+.+..++++..
T Consensus 358 Agfl~~l~~G-------~~~l~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~~~~~~~ 413 (426)
T PLN02813 358 AGILYGLLRG-------VSDLRGMGELAARVAATVVGQQGTRLRVEDAVELAESFALHLDGSD 413 (426)
T ss_pred HHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHHHHhccCc
Confidence 9999999999 8 99999999999999999999999999999999999988887765
No 7
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=8.8e-42 Score=357.00 Aligned_cols=308 Identities=20% Similarity=0.269 Sum_probs=249.5
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
..+++|+|+|.+++|++... +++|.+ .+ ......+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 13 ~~~~~vlviG~~~vD~~~~~---~~~~~~------~~-~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~ 82 (326)
T PTZ00292 13 EAEPDVVVVGSSNTDLIGYV---DRMPQV------GE-TLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGS 82 (326)
T ss_pred CCCCCEEEEccceeeEEEec---CCCCCC------CC-ceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHH
Confidence 34678999999999999875 344421 11 123456688999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEc-CCCCeEEEEecCCccccCCccccch--hhhcc-CcEEEEeccccccc
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG-KRGRLRMTCVKPCAEDALTKSEINI--DVLKE-AKMFYFSTHSMLER 357 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd-~~Ger~~~~~~~ga~~~lt~e~i~~--~~l~~-ad~v~~sg~~l~~~ 357 (575)
.+++.|++.||+++++.+.++.+|++++++++ .+|++.++ ..+++...++++.++. ..+.. ++++++++.
T Consensus 83 ~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----- 156 (326)
T PTZ00292 83 DTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIV-IIPGANNALTPQMVDAQTDNIQNICKYLICQNE----- 156 (326)
T ss_pred HHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEE-EeCCccccCCHHHHHHHHHHhhhhCCEEEECCC-----
Confidence 99999999999999998777889999999998 77888775 4567777777776652 44667 899988642
Q ss_pred chHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccc
Q 008161 358 NMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 358 ~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+.+.+.++++.+++.|++++||++.....|. .+.+..+++++|++++|++|++.++|.......+
T Consensus 157 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~--------- 222 (326)
T PTZ00292 157 IPLETTLDALKEAKERGCYTVFNPAPAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDTES--------- 222 (326)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhH---------
Confidence 23567788899999999999999986544432 2457788899999999999999998865322111
Q ss_pred cCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCC-eeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCc
Q 008161 438 VHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDK 516 (575)
Q Consensus 438 ~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~ 516 (575)
..+.++.+...+++.||||+|++|++++.++.. .++++ ++++ +||||||||+|+|||+++|++|
T Consensus 223 ---~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~---~~~~--vvDttGAGDaF~ag~l~~l~~g------- 287 (326)
T PTZ00292 223 ---AFKASKELQQLGVENVIITLGANGCLIVEKENEPVHVPG---KRVK--AVDTTGAGDCFVGSMAYFMSRG------- 287 (326)
T ss_pred ---HHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCceEEccC---Cccc--cCCCcchHHHHHHHHHHHHHCC-------
Confidence 124456676779999999999999999987643 44443 3444 8999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 517 GYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 517 ~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
+++++|+++|+++|++++++.|+..++|+.+++++.++
T Consensus 288 ~~~~~al~~a~a~Aa~~v~~~G~~~~~~~~~~~~~~~~ 325 (326)
T PTZ00292 288 KDLKESCKRANRIAAISVTRHGTQSSYPHPSELPADVK 325 (326)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHhc
Confidence 99999999999999999999999988999999988774
No 8
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=1.8e-41 Score=350.94 Aligned_cols=301 Identities=27% Similarity=0.460 Sum_probs=244.9
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
|++|++||++++|+++... ......+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 2 ~~~il~iG~~~iD~~~~~~---------------------~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i 60 (304)
T PRK09434 2 MNKVWVLGDAVVDLIPEGE---------------------NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFM 60 (304)
T ss_pred CCcEEEecchheeeecCCC---------------------CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHH
Confidence 4589999999999995320 2345679999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEE-ecCCccccCCccccchhhhccCcEEEEecccccccchHHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTC-VKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~-~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
++.|++.||++.++.+.++.+|+.+++.++.+|+|++.+ ..+++...++.+++ +.+.+++++|++++.+..+.....
T Consensus 61 ~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 138 (304)
T PRK09434 61 QQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDL--PPFRQGEWLHLCSIALSAEPSRST 138 (304)
T ss_pred HHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHh--hhhcCCCEEEEccccccCchHHHH
Confidence 999999999999998888889999999998888888643 33444444555554 346789999999876544445567
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcH
Q 008161 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
..++++.++++|.+++||++.+...|......++.+.++++++|++++|++|+..++|... ..
T Consensus 139 ~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~-----------------~~ 201 (304)
T PRK09434 139 TFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQ-----------------LE 201 (304)
T ss_pred HHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCC-----------------HH
Confidence 7889999999999999999987778865556677788899999999999999999988532 12
Q ss_pred HHHHHHHh-cCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008161 443 EVIAPLWH-ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 443 e~~~~L~~-~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
+++..+.+ .+++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++|.... ...++++
T Consensus 202 ~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~--~vDttGAGD~f~ag~~~~l~~g~~~~-~~~~~~~ 275 (304)
T PRK09434 202 DAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPA---PSVD--PVDTTGAGDAFVAGLLAGLSQAGLWT-DEAELAE 275 (304)
T ss_pred HHHHHHHhhcCCcEEEEEecCCceEEEeCCceeEeCC---CCCC--CCcCCCchHHHHHHHHHHHHcCCCcc-chHHHHH
Confidence 55666665 5889999999999999998775555543 3444 79999999999999999999991110 1128999
Q ss_pred HHHHHHHHHHHHccccccCCCCCCHHHHH
Q 008161 522 TIKYAIDCGVRDQWSQARTLGYPPKGGME 550 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~~pt~eeve 550 (575)
|+++|+++|+++|++.|+..++|++++++
T Consensus 276 a~~~a~~~Aa~~v~~~g~~~~~~~~~~~~ 304 (304)
T PRK09434 276 IIAQAQACGALATTAKGAMTALPNRQELE 304 (304)
T ss_pred HHHHHHHHHHHHHcccCCcCCCCChHHcC
Confidence 99999999999999999998999987753
No 9
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.1e-41 Score=368.38 Aligned_cols=321 Identities=18% Similarity=0.166 Sum_probs=249.1
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhh--hhhhcccc--cCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCC
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEI--HERMKDAL--WAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDD 277 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~--~~~l~~~~--~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D 277 (575)
.+|++|+++|++++|+++.+ +++|.... .......+ ..+......+|| ++|+|++|++||.++.++|.||+|
T Consensus 70 ~~~~~vl~lG~~~vD~i~~V---~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D 145 (470)
T PLN02341 70 GKEIDVATLGNLCVDIVLPV---PELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDE 145 (470)
T ss_pred cccccEEEECCcceeEEEec---CCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCc
Confidence 57788999999999999876 46664221 10111110 112344556788 689999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCccceEEEcC--------CCCCeEEEEEEcCCCCeEEEEecCCccccCCcc---cc---chhhhcc
Q 008161 278 EYGQAMLYYMNVNNVQTRSVRIDA--------KRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKS---EI---NIDVLKE 343 (575)
Q Consensus 278 ~~G~~i~~~L~~~GVdt~~v~~~~--------~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e---~i---~~~~l~~ 343 (575)
.+|++|++.|++.||++.++.... ...|++++++++++|++.+... .......... .+ ..+.++.
T Consensus 146 ~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~ 224 (470)
T PLN02341 146 IYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSR-ADFGPEPAFSWISKLSAEAKMAIRQ 224 (470)
T ss_pred HHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeec-cccccccchhhhhcccHHHHhhhhc
Confidence 999999999999999999987654 3579999999998888765321 1111111111 11 1356789
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC-ccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCC
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL-PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIK 422 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~-~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~ 422 (575)
+++||++++.+. ..+.+.+..+++.+++.|++|+||++.+. .+|...+...+.+..+++++||+++|++|++.|+|..
T Consensus 225 adiv~lsg~~~~-~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~ 303 (470)
T PLN02341 225 SKALFCNGYVFD-ELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIR 303 (470)
T ss_pred CCEEEEeceeCC-cCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCC
Confidence 999999987542 34567888999999999999999998653 3444433345567889999999999999999999863
Q ss_pred CCccccccccccccccCCcHHHHHHHHhcC--CcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHH
Q 008161 423 PTEEFDTKNNARSKFVHYEPEVIAPLWHEN--LKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVA 500 (575)
Q Consensus 423 ~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g--~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~A 500 (575)
. ..+.++.++..+ .+.||||+|++|+++++++...++++ ++++ +||||||||+|+|
T Consensus 304 ~-----------------~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa---~~v~--vVDTtGAGDaF~A 361 (470)
T PLN02341 304 N-----------------PILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPA---FKVN--VVDTVGCGDSFAA 361 (470)
T ss_pred C-----------------HHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCC---CCcC--CCCCcCccHHHHH
Confidence 2 125566676666 58999999999999999876555554 4454 8999999999999
Q ss_pred HHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCC
Q 008161 501 GIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDP 557 (575)
Q Consensus 501 Gfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~ 557 (575)
||+++|++| +++++|+++|+++||++|+..|+..++|++++|+++|.+..
T Consensus 362 gfl~gll~G-------~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~ 411 (470)
T PLN02341 362 AIALGYIHN-------LPLVNTLTLANAVGAATAMGCGAGRNVATLEKVLELLRASN 411 (470)
T ss_pred HHHHHHHcC-------CCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcC
Confidence 999999999 99999999999999999999999999999999999997644
No 10
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.5e-41 Score=346.63 Aligned_cols=309 Identities=23% Similarity=0.338 Sum_probs=257.5
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|++||++++|++.... +++|.. .+.. ........+||++.|+|+++++||.++.|+|.||+|.+|+++++
T Consensus 1 ~v~~iG~~~vD~~~~~~--~~~~~~------~~~~-~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~ 71 (311)
T COG0524 1 DVVVIGEANVDLIAQVV--DRLPEP------GETV-LGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLE 71 (311)
T ss_pred CEEEECchhhheehhhc--cCCCCC------cccc-cccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHH
Confidence 48999999999998631 344431 1111 12346789999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||+++++......+|+.+++.++.+|+|.+.+....+...++++.+++..+..++++|++++.+..+ .+.+..
T Consensus 72 ~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 149 (311)
T COG0524 72 ELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVLHISGIQLEIP--PEALLA 149 (311)
T ss_pred HHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCeeeEEEeecCCC--hHHHHH
Confidence 999999999999988878999999999999999887544445666888888777888999999999765332 278899
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.++++|.+|++|++.+..+|. .+.+..+++++|++++|+.|++.++|.. .+ .....
T Consensus 150 ~~~~a~~~g~~v~~d~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~-~~---------------~~~~~ 208 (311)
T COG0524 150 ALELAKAAGVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTGLE-ED---------------AEAAA 208 (311)
T ss_pred HHHHHHHcCCeEEEecCCCccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCCC-cc---------------HHHHH
Confidence 999999999999999999888774 5678889999999999999999999861 11 11223
Q ss_pred HHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHH
Q 008161 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKY 525 (575)
Q Consensus 446 ~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~ 525 (575)
..++..+++.+|||+|++|+++++++....++..+.++++ +||||||||+|+|||+++|++| .++++|+++
T Consensus 209 ~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~--vvDttGAGDaF~agfl~~~~~g-------~~~~~a~~~ 279 (311)
T COG0524 209 ALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVK--VVDTTGAGDAFAAGFLAGLLEG-------KSLEEALRF 279 (311)
T ss_pred HHHhhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccc--cccCCCchHHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 4566779999999999999999998654344443334444 8999999999999999999999 999999999
Q ss_pred HHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 526 AIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 526 A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
|+++|+++++..|+...+|+.++++.+++.
T Consensus 280 a~a~aa~~~~~~g~~~~~p~~~~~~~~~~~ 309 (311)
T COG0524 280 ANAAAALAVTRPGARPSLPTREEVEAFLEE 309 (311)
T ss_pred HHHHhhhhhccCCCCCCCCCHHHHHHHHhc
Confidence 999999999999999999999999998864
No 11
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=3.7e-41 Score=350.04 Aligned_cols=300 Identities=19% Similarity=0.219 Sum_probs=241.1
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccC----------CCceEEecCChHHHHHHHHHHcCCCeEEEEE
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWA----------PEKFIRSPGGCTGSAAIALARLGGKVAFMGK 273 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~----------~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~ 273 (575)
+.+|+|+|++++|++..+ +++|.+.......+.+.. .......+||+++|+|.+|++||.++.|+|.
T Consensus 1 ~~~v~~vG~~~~D~~~~v---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~ 77 (312)
T cd01168 1 RYDVLGLGNALVDILAQV---DDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGR 77 (312)
T ss_pred CceEEEECCCeEEEEEec---CHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEE
Confidence 357999999999999876 345522111111121111 0146788999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEeccc
Q 008161 274 LGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHS 353 (575)
Q Consensus 274 VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~ 353 (575)
||+|.+|+.+++.|++.||++.++... +.+|+.++++++++|+|+++ ..+++...++++++....+..++++|++++.
T Consensus 78 vG~D~~g~~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~ 155 (312)
T cd01168 78 VGDDKLGDFLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMC-TYLGAANELSPDDLDWSLLAKAKYLYLEGYL 155 (312)
T ss_pred eccChhHHHHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeee-cccchhhcCChhHCCHHHHccCCEEEEEEEe
Confidence 999999999999999999999988754 57899999999988998764 5677777888888877788999999999864
Q ss_pred ccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccc
Q 008161 354 MLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNA 433 (575)
Q Consensus 354 l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~ 433 (575)
+.. ..+.+..+++.+++.|++|+||++.+. + .....+.+..+++++|++++|++|++.|+|.+...
T Consensus 156 ~~~--~~~~~~~~~~~a~~~g~~v~~d~~~~~--~--~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~-------- 221 (312)
T cd01168 156 LTV--PPEAILLAAEHAKENGVKIALNLSAPF--I--VQRFKEALLELLPYVDILFGNEEEAEALAEAETTD-------- 221 (312)
T ss_pred cCC--CHHHHHHHHHHHHHcCCEEEEeCCcHH--H--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCCCCC--------
Confidence 322 237888999999999999999986321 1 12234557788999999999999999999852111
Q ss_pred cccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCC-CCCcccCccCchHHHHHHHHHHHHcCCCC
Q 008161 434 RSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAP-LTPFTSDMSASGDGIVAGIMRMLTVQPHL 512 (575)
Q Consensus 434 ~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~-v~~~vVDTtGAGDaF~AGfl~~L~~g~~~ 512 (575)
..+.+..++..+++.||||+|++|+++++++...++++ ++ ++ +||||||||+|+|||+++|++|
T Consensus 222 -------~~~~a~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~~--vvDttGAGDaf~ag~l~~l~~g--- 286 (312)
T cd01168 222 -------DLEAALKLLALRCRIVVITQGAKGAVVVEGGEVYPVPA---IPVEK--IVDTNGAGDAFAGGFLYGLVQG--- 286 (312)
T ss_pred -------hHHHHHHHHhcCCCEEEEecCCCCeEEEECCEEEeCCC---CCCCC--cccCCchHHHHHHHHHHHHHcC---
Confidence 24678888888999999999999999998664444443 33 43 8999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHccccccCC
Q 008161 513 ITDKGYLVRTIKYAIDCGVRDQWSQARTL 541 (575)
Q Consensus 513 ~~d~~sl~eAl~~A~aaAA~~v~~~G~~~ 541 (575)
+++++|+++|+++|+++|++.|+..
T Consensus 287 ----~~~~~a~~~a~~~Aa~~v~~~G~~~ 311 (312)
T cd01168 287 ----EPLEECIRLGSYAAAEVIQQLGPRL 311 (312)
T ss_pred ----CCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999863
No 12
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=2.4e-40 Score=340.24 Aligned_cols=287 Identities=34% Similarity=0.585 Sum_probs=236.7
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+|||++++|+++.... + +......+||+++|+|.+|++||.+|.++|.+|+|.+|+.+++
T Consensus 1 ~ilviG~~~~D~~~~~~~---~---------------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~ 62 (295)
T cd01167 1 KVVCFGEALIDFIPEGSG---A---------------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLE 62 (295)
T ss_pred CEEEEcceeEEEecCCCC---C---------------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHH
Confidence 689999999999975421 1 2566788999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++.++.+..+.+|+++++.++.+|+|++.+............++....+++++++|++++.++++...+.+.+
T Consensus 63 ~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 142 (295)
T cd01167 63 TLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEADILHFGSIALASEPSRSALLE 142 (295)
T ss_pred HHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccCCEEEEechhhccchHHHHHHH
Confidence 99999999999987778899999999988888887643332222221121445678899999998876555555677889
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.+++.|+++++|++.+..+|.......+.+..+++++|++++|+.|+..++|.... .+.+
T Consensus 143 ~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~-----------------~~~~ 205 (295)
T cd01167 143 LLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDP-----------------EEIA 205 (295)
T ss_pred HHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCH-----------------HHHH
Confidence 99999999999999998776677544444566788999999999999999999886421 1445
Q ss_pred HHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCch-------h
Q 008161 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG-------Y 518 (575)
Q Consensus 446 ~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~-------s 518 (575)
+.+...|++.||||+|++|++++.++...++++ ++++ ++|||||||+|+|||+++|++| . +
T Consensus 206 ~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a---~~~~--vvDttGAGD~f~a~~~~~l~~g-------~~~~~~~~~ 273 (295)
T cd01167 206 ALLLLFGLKLVLVTRGADGALLYTKGGVGEVPG---IPVE--VVDTTGAGDAFVAGLLAQLLSR-------GLLALDEDE 273 (295)
T ss_pred HHHhhcCCCEEEEecCCcceEEEECCcceeeCC---CCcc--eeeCCCccHHHHHHHHHHHHhC-------CcccccHHH
Confidence 666778999999999999999998876556655 3444 8999999999999999999999 7 9
Q ss_pred HHHHHHHHHHHHHHHcccccc
Q 008161 519 LVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~ 539 (575)
+++|+++|+++|+++|++.|+
T Consensus 274 ~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 274 LAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred HHHHHHHHHHhhHHHhcccCC
Confidence 999999999999999999986
No 13
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=3.3e-40 Score=338.66 Aligned_cols=290 Identities=22% Similarity=0.337 Sum_probs=236.8
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+|+|.+++|++... +++|.+ +.......+..++||++.|+|.+|++||.++.++|.+|+|.+|+.|++
T Consensus 1 ~il~iG~~~~D~~~~~---~~~~~~-------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (292)
T cd01174 1 KVVVVGSINVDLVTRV---DRLPKP-------GETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLE 70 (292)
T ss_pred CEEEEeeceeEEEEEe---cCCCCC-------CCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHH
Confidence 5899999999999865 233321 112234567789999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
.|++.||+++++.+.++.+|++++++++.+|++++. ...++...++++.+. ...+..++++|+++. .+.+.+
T Consensus 71 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~ 144 (292)
T cd01174 71 NLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIV-VVPGANGELTPADVDAALELIAAADVLLLQLE-----IPLETV 144 (292)
T ss_pred HHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEE-EeCCCCCCCCHHHHHHHHHhcccCCEEEEeCC-----CCHHHH
Confidence 999999999999777788999999999888998876 445666666666554 256789999999852 245677
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHH
Q 008161 364 LQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPE 443 (575)
Q Consensus 364 ~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e 443 (575)
..+++.++++|++|+||++..... +..+++++|++++|++|++.|++.......+ ..+
T Consensus 145 ~~~~~~a~~~g~~v~~D~~~~~~~----------~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~------------~~~ 202 (292)
T cd01174 145 LAALRAARRAGVTVILNPAPARPL----------PAELLALVDILVPNETEAALLTGIEVTDEED------------AEK 202 (292)
T ss_pred HHHHHHHHhcCCEEEEeCCCcCcC----------cHHHHhhCCEEeeCHHHHHHHhCCCCCCHHH------------HHH
Confidence 889999999999999998743221 2567889999999999999999875432111 125
Q ss_pred HHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 008161 444 VIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTI 523 (575)
Q Consensus 444 ~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl 523 (575)
.++.++..|++.||||+|.+|+++++++...++++ ++++ ++||+||||+|+|||+++|++| +++++|+
T Consensus 203 ~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~--~vdt~GaGD~F~ag~l~~l~~g-------~~~~~al 270 (292)
T cd01174 203 AARLLLAKGVKNVIVTLGAKGALLASGGEVEHVPA---FKVK--AVDTTGAGDTFIGALAAALARG-------LSLEEAI 270 (292)
T ss_pred HHHHHHHcCCCEEEEEeCCCceEEEeCCceEEecC---CCcc--cCCCCCcHHHHHHHHHHHHHcC-------CCHHHHH
Confidence 66777788999999999999999998765444443 3444 7999999999999999999999 9999999
Q ss_pred HHHHHHHHHHccccccCCCCCC
Q 008161 524 KYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 524 ~~A~aaAA~~v~~~G~~~~~pt 545 (575)
++|+++|++++++.|+..++|+
T Consensus 271 ~~a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 271 RFANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred HHHHHHHHHHhcCcCCCCCCCC
Confidence 9999999999999999988875
No 14
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=2.3e-40 Score=356.56 Aligned_cols=322 Identities=14% Similarity=0.169 Sum_probs=244.5
Q ss_pred CCCCcEEEEccceeeeeccCCC-----------CCCcchhhhhhhhcccccCCCc-eEEecCChHHHHHHHHHHcC-CCe
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRP-----------ANRLIDHEIHERMKDALWAPEK-FIRSPGGCTGSAAIALARLG-GKV 268 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~-----------~~~lp~~e~~~~l~~~~~~~~~-~~~~~GG~a~NvA~aLarLG-~~v 268 (575)
+++.+|++||++++|+...+.. ...+.+++.+..+.+.+..... ....+||+++|+|++|++|| .++
T Consensus 31 ~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~~ 110 (434)
T PRK15074 31 TSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADDRS 110 (434)
T ss_pred CCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCCCe
Confidence 4566899999999999987521 1234445556666665532111 45679999999999999996 999
Q ss_pred EEEEEeCCC-hHHHHHHHHHH--hCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCc
Q 008161 269 AFMGKLGDD-EYGQAMLYYMN--VNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAK 345 (575)
Q Consensus 269 ~lvg~VG~D-~~G~~i~~~L~--~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad 345 (575)
.|+|.||+| .+|+++++.|. +.||++.++...+ .+|++|+++++++|+|++. .+.++...+++++++...++.++
T Consensus 111 ~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~-~~TG~~~VlV~~dGeRt~~-t~~GA~~~Lt~edld~~~i~~a~ 188 (434)
T PRK15074 111 VLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD-GPIGRCFTLISEDGERTFA-ISPGHMNQLRPESIPEDVIAGAS 188 (434)
T ss_pred EEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC-CCCEEEEEEECCCCCEEEE-EecChhhcCChhHCCHhHhccCC
Confidence 999999999 69999999997 6899999986554 5899999999999999886 55788889999999888899999
Q ss_pred EEEEeccccc---ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCC
Q 008161 346 MFYFSTHSML---ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIK 422 (575)
Q Consensus 346 ~v~~sg~~l~---~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~ 422 (575)
++|++|+.+. .....+.+.++++.|+++|++|+||++.+..+|...+.+ ...+++++|||++|++|+..|+|..
T Consensus 189 ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~---~e~l~~~vDILf~NeeEa~~LtG~~ 265 (434)
T PRK15074 189 ALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWW---QEFLKEHVSILAMNEDEAEALTGES 265 (434)
T ss_pred EEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHH---HHHHHhcCCEEEcCHHHHHHHhCCC
Confidence 9999998654 223467888999999999999999999765444322222 2345579999999999999999853
Q ss_pred CCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCC-----e-----------------------
Q 008161 423 PTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-----G----------------------- 474 (575)
Q Consensus 423 ~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~-----~----------------------- 474 (575)
. ..+.+..+. .+++.||||+|++|++++..++. .
T Consensus 266 d-----------------~eea~~~L~-~~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (434)
T PRK15074 266 D-----------------PLLASDKAL-DWVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRK 327 (434)
T ss_pred C-----------------HHHHHHHHH-cCCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhc
Confidence 1 113444444 46899999999999999753221 1
Q ss_pred -----------eEecccCCCCCCcccCccCchHHHHHHHHHHHHcCC-C------------CCCCchhHHHHHHHHHHHH
Q 008161 475 -----------AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQP-H------------LITDKGYLVRTIKYAIDCG 530 (575)
Q Consensus 475 -----------~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~-~------------~~~d~~sl~eAl~~A~aaA 530 (575)
+++++...+++ +||||||||+|+|||+|+|++|. + .+....++.+|+++|+++|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~--~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 405 (434)
T PRK15074 328 KDCQNPLRVYSHIAPYMGGPEK--IMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVS 405 (434)
T ss_pred cccccccccccccCcccCCCCc--ceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHH
Confidence 22221001333 89999999999999999999992 0 0001127999999999999
Q ss_pred HHHcccccc--CCCCCCHHH
Q 008161 531 VRDQWSQAR--TLGYPPKGG 548 (575)
Q Consensus 531 A~~v~~~G~--~~~~pt~ee 548 (575)
+..+++.|+ ..++|+.++
T Consensus 406 ~~vi~~~G~~~~~~~p~~~~ 425 (434)
T PRK15074 406 YEVLNQHSPRLSRGLPERED 425 (434)
T ss_pred HHHHhhcCCCCCCCCCCccc
Confidence 999999999 556777554
No 15
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=6e-40 Score=341.53 Aligned_cols=305 Identities=18% Similarity=0.185 Sum_probs=240.3
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
++++.|+|+|++++|++.... .|. ......+......+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 2 ~~~~~i~~iG~~~vD~~~~~~----~~~-------~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~ 70 (313)
T PRK09850 2 REKDYVVIIGSANIDVAGYSH----ESL-------NYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQ 70 (313)
T ss_pred CCCCcEEEECcEEEeeeccCC----CcC-------cCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHH
Confidence 467789999999999997642 121 011113456788999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccch
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
++++.|++.||+++++...++.+|++++++++++|++.+.+..+++...++.+.+. .+.++.++++|+++. ..
T Consensus 71 ~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~ 145 (313)
T PRK09850 71 SLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCN-----IS 145 (313)
T ss_pred HHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CC
Confidence 99999999999999988778888999999999889987765434555556555443 245788999999753 23
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccC
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.+ .|++|+||++. .|. ...+..+++++|+|++|.+|+..|+|.......+
T Consensus 146 ~~~~~~~~~~~--~g~~v~~D~~~---~~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~----------- 204 (313)
T PRK09850 146 EEALAWILDNA--ANVPVFVDPVS---AWK-----CVKVRDRLNQIHTLKPNRLEAETLSGIALSGRED----------- 204 (313)
T ss_pred HHHHHHHHHhc--cCCCEEEEcCC---HHH-----HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHH-----------
Confidence 45555565543 58899999873 332 1345678899999999999999999865322111
Q ss_pred CcHHHHHHHHhcCCcEEEEecCCcceEEEecCCC-eeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchh
Q 008161 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 440 ~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.+.+.|++.||||+|++|++++.+++. .++++ ++++ +||||||||+|+|||+++|++| ++
T Consensus 205 -~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~---~~~~--vvDttGAGDaF~agfi~~l~~g-------~~ 271 (313)
T PRK09850 205 -VAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGWSAP---IKTN--VINVTGAGDAMMAGLASCWVDG-------MP 271 (313)
T ss_pred -HHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCCeEecCC---CCcc--cccCCCcHHHHHHHHHHHHHcC-------CC
Confidence 124556676789999999999999999986433 23333 3344 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCC
Q 008161 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPD 556 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~ 556 (575)
+.+|+++|+++|+++++..+.....|++++|+.++.++
T Consensus 272 ~~eal~~a~a~aa~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (313)
T PRK09850 272 FAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVENA 309 (313)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999998643
No 16
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.8e-39 Score=333.36 Aligned_cols=287 Identities=13% Similarity=0.106 Sum_probs=228.5
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+|||++++|++... +++|.+ ........+...+|| ++|+|++|++||.++.++|.||+|.+|++|++
T Consensus 1 ~i~~iG~~~~D~i~~~---~~~~~~-------~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~ 69 (289)
T cd01944 1 KVLVIGAAVVDIVLDV---DKLPAS-------GGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQ 69 (289)
T ss_pred CeEEEcceeEEEEeec---ccCCCC-------CCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHH
Confidence 4899999999999875 344421 122234567899999 99999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccc-hHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERN-MKSTTL 364 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~-~~e~~~ 364 (575)
.|++.||+++++.+. +..|+.++++++.+|+|++. ...++...+++++++...+..++++|++++.+.... ....+.
T Consensus 70 ~l~~~gi~~~~~~~~-~~~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (289)
T cd01944 70 AMRDEGIEILLPPRG-GDDGGCLVALVEPDGERSFI-SISGAEQDWSTEWFATLTVAPYDYVYLSGYTLASENASKVILL 147 (289)
T ss_pred HHHHcCCcccccccc-CCCCeEEEEEEcCCCceEEE-EeCCccCCCCHHHhccccCCCCCEEEEeCccccCcchhHHHHH
Confidence 999999999988764 56788888888888998875 445666566666665434678999999997653322 456667
Q ss_pred HHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHH
Q 008161 365 QAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 365 ~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
++++.++ .+.+++||++.+...|. ...+..+++++|++++|++|+..|+|..... ....
T Consensus 148 ~~~~~~~-~~~~v~~D~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~---------------~~~~ 206 (289)
T cd01944 148 EWLEALP-AGTTLVFDPGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAERGDPA---------------AEAS 206 (289)
T ss_pred HHHHhcc-CCCEEEEcCcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCCCCcc---------------hHHH
Confidence 7776654 57899999987765553 4567888999999999999999999864321 1133
Q ss_pred HHHHHhcCCcEEEEecCCcceEEEecCCC-eeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 008161 445 IAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTI 523 (575)
Q Consensus 445 ~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl 523 (575)
+..+...+++.||||+|++|++++.+++. .++++ ++++ ++|||||||+|+|||+++|++| +++++|+
T Consensus 207 ~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~---~~~~--vvDt~GAGDaf~ag~l~~~~~g-------~~~~~a~ 274 (289)
T cd01944 207 ALRIYAKTAAPVVVRLGSNGAWIRLPDGNTHIIPG---FKVK--AVDTIGAGDTHAGGMLAGLAKG-------MSLADAV 274 (289)
T ss_pred HHHHHhccCCeEEEEECCCcEEEEecCCCeEEecC---CCCC--CccCCCchHHHHHHHHHHHHcC-------CCHHHHH
Confidence 56677788899999999999999985533 33333 3444 8999999999999999999999 9999999
Q ss_pred HHHHHHHHHHccccc
Q 008161 524 KYAIDCGVRDQWSQA 538 (575)
Q Consensus 524 ~~A~aaAA~~v~~~G 538 (575)
++|+++|+++|++.|
T Consensus 275 ~~a~a~aa~~~~~~G 289 (289)
T cd01944 275 LLANAAAAIVVTRSG 289 (289)
T ss_pred HHHHHHHHhhhccCC
Confidence 999999999999876
No 17
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.1e-39 Score=344.64 Aligned_cols=316 Identities=18% Similarity=0.125 Sum_probs=247.1
Q ss_pred CCCCcEEEEc-cceeeeeccCC-----------CCCCcchhhhhhhhcccccC--------CCceEEecCChHHHHHHHH
Q 008161 202 GWPPLVCCFG-SAQHAFVPSGR-----------PANRLIDHEIHERMKDALWA--------PEKFIRSPGGCTGSAAIAL 261 (575)
Q Consensus 202 ~~~~~VlviG-~~~iD~i~~~~-----------~~~~lp~~e~~~~l~~~~~~--------~~~~~~~~GG~a~NvA~aL 261 (575)
..+++|++|| ++++|++..+. ....+.+++.+..+...+.. ......++||+++|++++|
T Consensus 17 ~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~l 96 (367)
T PLN02379 17 PRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGL 96 (367)
T ss_pred CCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHH
Confidence 4567899999 99999997752 12234455666666655431 2247788999999999999
Q ss_pred HH-cCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhh
Q 008161 262 AR-LGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDV 340 (575)
Q Consensus 262 ar-LG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~ 340 (575)
++ ||.++.|+|.||+|.+|+++++.|++.||++.++.. .+.+|+.|+++++++|+|++. ...++...++++++..+.
T Consensus 97 a~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~-~~~~Tg~~~v~v~~dgert~~-~~lg~~~~l~~~~~~~~~ 174 (367)
T PLN02379 97 SAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRA-KKGPTAQCVCLVDALGNRTMR-PCLSSAVKLQADELTKED 174 (367)
T ss_pred HHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCccc-CCCCCceEEEEECCCCCcccc-CCccccccCChhHCCHHH
Confidence 96 999999999999999999999999999999988754 345899999999999998874 445666677777887778
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc--cCeEEeCCHHHHHHh
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELEFL 418 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDII~~N~~Ea~~L 418 (575)
+++++|+|++ +... ..+.+.++++.++++|++|++|++..... ..+++.+..+++ ++|||++|++|+..+
T Consensus 175 ~~~~~~v~v~-~~~~---~~~~~~~~~~~A~~~g~~v~lD~s~~~~v----~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l 246 (367)
T PLN02379 175 FKGSKWLVLR-YGFY---NLEVIEAAIRLAKQEGLSVSLDLASFEMV----RNFRSPLLQLLESGKIDLCFANEDEAREL 246 (367)
T ss_pred HhcCCEEEEE-cccC---CHHHHHHHHHHHHHcCCEEEEeccchhhh----hhhhHHHHHHhhcCCccEEEcCHHHHHHH
Confidence 8999999999 4332 36788899999999999999999743211 112445666664 899999999999999
Q ss_pred hCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHH
Q 008161 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGI 498 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF 498 (575)
++....+ ..+.+..++..+++.+|||+|++|++++.+++..+++++ ++. .+||||||||+|
T Consensus 247 ~~~~~~~---------------~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~---~~~-~vVDTtGAGDaF 307 (367)
T PLN02379 247 LRGEQES---------------DPEAALEFLAKYCNWAVVTLGSKGCIARHGKEVVRVPAI---GET-NAVDATGAGDLF 307 (367)
T ss_pred hcCCCCC---------------CHHHHHHHHHhcCCEEEEEECCCCeEEEECCEEEEecCC---CCC-CcccCCChhHHH
Confidence 8743211 134555566778999999999999999987754455542 221 279999999999
Q ss_pred HHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhh
Q 008161 499 VAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEV 553 (575)
Q Consensus 499 ~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l 553 (575)
+|||+|+|++| +++++|+++|+++|+.+|++.|++.....++++.+.+
T Consensus 308 aagfl~gl~~G-------~~l~~a~~~g~~aAa~vi~~~G~~~~~~~~~~~~~~~ 355 (367)
T PLN02379 308 ASGFLYGLIKG-------LSLEECCKVGACSGGSVVRALGGEVTPENWQWMYKQM 355 (367)
T ss_pred HHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 99999999999 9999999999999999999999975444444455544
No 18
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=1.4e-39 Score=343.53 Aligned_cols=308 Identities=16% Similarity=0.178 Sum_probs=234.5
Q ss_pred CCCCcEEEEccceeeeeccCCC--CCCc-ch-------hhhhhhhcccccCCCceEEecCChHHHHHHHHHHcC---C-C
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRP--ANRL-ID-------HEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLG---G-K 267 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~--~~~l-p~-------~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG---~-~ 267 (575)
+..++|+|||++++|++..+.. ..++ |. ++.+.+....+.....+...+||+++|+|++|++|| . +
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~ 82 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGF 82 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCc
Confidence 4567899999999999987531 0001 11 011111212222224568899999999999999885 5 8
Q ss_pred eEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch----hhhcc
Q 008161 268 VAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI----DVLKE 343 (575)
Q Consensus 268 v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~----~~l~~ 343 (575)
|.|+|.||+|.+|+++++.|++.||++.++. ..+.+|++++++++. |+|+++ ..++++..+++++++. ..+.+
T Consensus 83 v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~-~~~ga~~~l~~~~i~~~~~~~~l~~ 159 (345)
T PTZ00247 83 VCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-KERSLV-ANLGAANHLSAEHMQSHAVQEAIKT 159 (345)
T ss_pred EEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-CCcccc-cCcchhhcCChHHcCcHHHHHHHhh
Confidence 9999999999999999999999999998875 567789999998874 788764 5678888888887763 36889
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCC
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKP 423 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~ 423 (575)
+++||++++.+. .+.+.+.++++.++++|++|+||++.+ .|. ......+.++++++|++++|++|++.|+|...
T Consensus 160 ~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~~--~~~--~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~ 233 (345)
T PTZ00247 160 AQLYYLEGFFLT--VSPNNVLQVAKHARESGKLFCLNLSAP--FIS--QFFFERLLQVLPYVDILFGNEEEAKTFAKAMK 233 (345)
T ss_pred CCEEEEEEEEec--ccHHHHHHHHHHHHHcCCEEEEECCcH--HHH--HHHHHHHHHHHhhCCEEEeCHHHHHHHhhccC
Confidence 999999986432 245788999999999999999997632 221 12234577899999999999999999998421
Q ss_pred CccccccccccccccCCcHHHHHHHHh------cCCcEEEEecCCcceEEEecCCCeeEecccCCCCCC-cccCccCchH
Q 008161 424 TEEFDTKNNARSKFVHYEPEVIAPLWH------ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTP-FTSDMSASGD 496 (575)
Q Consensus 424 ~~~~d~~~~~~~~~~~~~~e~~~~L~~------~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~-~vVDTtGAGD 496 (575)
....+ ..+.+..+.. .+.+.||||+|++|+++++++...+++++ ++++ .+||||||||
T Consensus 234 ~~~~~------------~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~---~v~~~~vVDTtGAGD 298 (345)
T PTZ00247 234 WDTED------------LKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVP---PLDQEKIVDTNGAGD 298 (345)
T ss_pred CCccC------------HHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEecc---ccCCCCccCCCChHH
Confidence 11001 1234444432 25789999999999999998765556553 3321 2799999999
Q ss_pred HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccC
Q 008161 497 GIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQART 540 (575)
Q Consensus 497 aF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~ 540 (575)
+|+|||+++|++| +++++|+++|+++|+++|++.|+.
T Consensus 299 aF~agfl~~l~~g-------~~~~~al~~a~~aAa~~v~~~Ga~ 335 (345)
T PTZ00247 299 AFVGGFLAQYANG-------KDIDRCVEAGHYSAQVIIQHNGCT 335 (345)
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999 999999999999999999999996
No 19
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=2.4e-39 Score=332.35 Aligned_cols=291 Identities=25% Similarity=0.373 Sum_probs=235.5
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+|||++++|++..... . ...+......+||+++|+|++|++||.++.++|.||+|.+|+.+++
T Consensus 1 ~i~~iG~~~iD~~~~~~~--~-------------~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~ 65 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG--R-------------LEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILA 65 (294)
T ss_pred CeEEechhheeeecCCCC--c-------------cchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 589999999999965320 0 1134667788999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEec-CCccccCCccccchhhhccCcEEEEecccc-cccchHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVK-PCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNMKSTT 363 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~-~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l-~~~~~~e~~ 363 (575)
.|++.||++.++.+.++.+|+++++.++.+|+|++.+.. .++...++.++++...+.++++||++++.. ..+.+.+.+
T Consensus 66 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (294)
T cd01166 66 ELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLSGITLALSESAREAL 145 (294)
T ss_pred HHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEcCcchhhCHHHHHHH
Confidence 999999999999888888999999999877888776442 345556777777667788999999998643 222234788
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHH
Q 008161 364 LQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPE 443 (575)
Q Consensus 364 ~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e 443 (575)
..+++.+++.|+++++||+....+|. .....+.+..+++++|++++|..|++.+++..... + ..+
T Consensus 146 ~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~--~------------~~~ 210 (294)
T cd01166 146 LEALEAAKARGVTVSFDLNYRPKLWS-AEEAREALEELLPYVDIVLPSEEEAEALLGDEDPT--D------------AAE 210 (294)
T ss_pred HHHHHHHHHcCCEEEECCCCcchhcC-hHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCch--h------------HHH
Confidence 88999999999999999986554442 22344567788999999999999999998864211 0 124
Q ss_pred HHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 008161 444 VIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTI 523 (575)
Q Consensus 444 ~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl 523 (575)
.++.+ ..|++.||||+|++|++++.++..+++++ ++++ ++||+||||+|+|||+++|++| +++++|+
T Consensus 211 ~~~~l-~~g~~~viit~G~~G~~~~~~~~~~~~~~---~~~~--~vdt~GAGD~f~a~~~~~l~~g-------~~~~~a~ 277 (294)
T cd01166 211 RALAL-ALGVKAVVVKLGAEGALVYTGGGRVFVPA---YPVE--VVDTTGAGDAFAAGFLAGLLEG-------WDLEEAL 277 (294)
T ss_pred HHHhh-cCCccEEEEEEcCCceEEEECCceEEeCC---CCcc--cccCCCchHHHHHHHHHHHHcC-------CCHHHHH
Confidence 45555 57999999999999999998765545544 3443 7999999999999999999999 9999999
Q ss_pred HHHHHHHHHHcccccc
Q 008161 524 KYAIDCGVRDQWSQAR 539 (575)
Q Consensus 524 ~~A~aaAA~~v~~~G~ 539 (575)
++|+++|+++|++.|+
T Consensus 278 ~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 278 RFANAAAALVVTRPGD 293 (294)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999986
No 20
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=4.8e-40 Score=338.10 Aligned_cols=298 Identities=26% Similarity=0.369 Sum_probs=239.9
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
|.+|+|||++++|++.... ++. .+.. +.......+||++.|+|++|++||.+|.++|.||+|.+|+.+
T Consensus 1 m~~v~~iG~~~iD~~~~~~---~~~--------~~~~-~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i 68 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVD---RFK--------GDLV-RVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEII 68 (301)
T ss_dssp EEEEEEESEEEEEEEEESS---SHT--------TSEE-EESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHH
T ss_pred CCcEEEECccceEEEeecC---CcC--------Ccce-ecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhh
Confidence 5689999999999998763 110 1222 457889999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
++.|++.||+++++.+.++.+|++++++++++|+|++. ...++...++.+++....+..++++|+++..+........+
T Consensus 69 ~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (301)
T PF00294_consen 69 LEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFV-FSPGANSDLTPDELDEEAIDEADILHLSGVSLPEGIPEDLL 147 (301)
T ss_dssp HHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEE-EEEGGGGGGGHHHHHHHHHHTESEEEEESGHCSTTSHHHHH
T ss_pred hhccccccccccccccccccccceeEeeecccccceee-eccccccccccccccccccccccceeeccccccccccccee
Confidence 99999999999999988888999999999988888876 44566666666666667888999999999322333445566
Q ss_pred HHHHHHHhhcC--CEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 364 LQAIKISKQFG--GIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 364 ~~ll~~ak~~G--~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
..+.+.++..+ .+++.+ +.|.. ..+.+.++++++|++++|++|+..+++....+..+ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~------------~ 207 (301)
T PF00294_consen 148 EALAKAAKKNGPFDPVFRD-----PSWDD---LREDLKELLPYADILKPNEEEAEALTGSKIDDPED------------A 207 (301)
T ss_dssp HHHHHHHHHTTEEEEEEEG-----GGSHH---HHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHH------------H
T ss_pred eeccccccccccccccccc-----ccccc---cchhhhhhccccchhccccccccccccccccchhh------------h
Confidence 66666666666 234444 33321 45778888899999999999999999987432111 1
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
...+.+++..+++.+|||+|++|+++++++...+++++ +++. ++|||||||+|+|||+++|+++ +++++
T Consensus 208 ~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~--~~~~--vvdttGAGD~f~A~~i~~l~~~-------~~~~~ 276 (301)
T PF00294_consen 208 LAALRELQARGVKIVIVTLGEDGALYYTNDESYHVPPV--PPVN--VVDTTGAGDAFAAGFIYGLLSG-------MSLEE 276 (301)
T ss_dssp HHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEEE--SSSS--SSSCTTHHHHHHHHHHHHHHTT-------HHHHH
T ss_pred hccccccchhhhhhhhccccccCccccccccccccccc--cccc--ccceeccchhhhHHHHHHHHcC-------CCHHH
Confidence 24556666789999999999999999997766666654 2343 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHccccccCCCCCC
Q 008161 522 TIKYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~~pt 545 (575)
|+++|+++|+++|++.|+..++||
T Consensus 277 a~~~a~~~aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 277 ALKFANAAAALKVQQPGPRSPLPT 300 (301)
T ss_dssp HHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred HHHHHHHHHHHHhCCCCCcCCCCC
Confidence 999999999999999999998887
No 21
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=2e-38 Score=324.41 Aligned_cols=283 Identities=18% Similarity=0.202 Sum_probs=227.5
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+|+|++++|++... +++|.. ........+...+||+++|+|.+|++||.++.++|.||+|.+|+++++
T Consensus 1 ~i~~iG~~~iD~~~~~---~~~p~~-------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (284)
T cd01945 1 RVLGVGLAVLDLIYLV---ASFPGG-------DGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILA 70 (284)
T ss_pred CEEEECcceeEEEEEe---ccCCCC-------CCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHH
Confidence 5899999999999875 334421 111234678899999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++.++...++.+|+++++ +..+|++++... .+....+..++++...+++++++|++++. .+...+
T Consensus 71 ~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~i~~~~------~~~~~~ 142 (284)
T cd01945 71 ELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISI-TAIDTQAAPDSLPDAILGGADAVLVDGRQ------PEAALH 142 (284)
T ss_pred HHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEe-cCCCCCCCcccCCHHHhCcCCEEEEcCCC------HHHHHH
Confidence 9999999999998877778888876 445666666433 34445566677766668999999998742 356788
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.+++.|+++++|++.... .. +.++++++|++++|++|++.+++... .+.+
T Consensus 143 ~~~~~~~~g~~v~~~~~~~~~--------~~-~~~~~~~~dil~~n~~e~~~l~~~~~------------------~~~~ 195 (284)
T cd01945 143 LAQEARARGIPIPLDLDGGGL--------RV-LEELLPLADHAICSENFLRPNTGSAD------------------DEAL 195 (284)
T ss_pred HHHHHHHcCCCeeEeccCCcc--------cc-hHHHhccCCEEEeChhHHhhhcCCCH------------------HHHH
Confidence 899999999977777653221 12 66788999999999999999987531 1445
Q ss_pred HHHHhcCCcEEEEecCCcceEEEe-cCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHH
Q 008161 446 APLWHENLKVLFVTNGTSKVHYYT-KEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIK 524 (575)
Q Consensus 446 ~~L~~~g~k~VVVT~G~~Ga~v~~-~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~ 524 (575)
+.+...+++.||||+|++|+++++ +++..++++ ++++ ++|||||||+|+|||+++|++| +++++|++
T Consensus 196 ~~l~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~---~~~~--vvDt~GAGDaf~ag~l~~l~~g-------~~~~~al~ 263 (284)
T cd01945 196 ELLASLGIPFVAVTLGEAGCLWLERDGELFHVPA---FPVE--VVDTTGAGDVFHGAFAHALAEG-------MPLREALR 263 (284)
T ss_pred HHHHhcCCcEEEEEECCCCeEEEcCCCCEEecCC---Cccc--cccCCCcHHHHHHHHHHHHHcC-------CCHHHHHH
Confidence 566677999999999999999998 444344443 3444 8999999999999999999999 99999999
Q ss_pred HHHHHHHHHccccccCCCCCC
Q 008161 525 YAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 525 ~A~aaAA~~v~~~G~~~~~pt 545 (575)
+|+++|+++|++.|+..++|+
T Consensus 264 ~a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 264 FASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred HHHHHHHHHHhccCCcccCCC
Confidence 999999999999999988885
No 22
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.6e-38 Score=322.53 Aligned_cols=275 Identities=19% Similarity=0.191 Sum_probs=223.5
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+|+|++++|++..+ +++|.. ............+||++.|+|.+|++||.++.++|.||+|.+|+++++
T Consensus 1 ~v~~iG~~~~D~~~~v---~~~p~~-------~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~ 70 (279)
T cd01942 1 DVAVVGHLNYDIILKV---ESFPGP-------FESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLE 70 (279)
T ss_pred CEEEEecceeeeEeec---ccCCCC-------CceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHH
Confidence 4899999999999865 345531 112345788899999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++.++....+.+|+.++++++.+|++.+. ..+++...+++++ ....+..++++|+++.. .+.+
T Consensus 71 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~ 140 (279)
T cd01942 71 ELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAY-FYPGAMDELEPND-EADPDGLADIVHLSSGP--------GLIE 140 (279)
T ss_pred HHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEE-ecCCcccccccCC-chhhhcccCEEEeCCch--------HHHH
Confidence 999999999999777777899999999888887664 4566666666655 45677899999998652 4567
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHH---HhhCCCCCccccccccccccccCCcH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELE---FLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~---~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+++.+++.|++|+||++.....|. .+.+..+++++|++++|++|+. .+++... .
T Consensus 141 ~~~~~~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~------------------~ 197 (279)
T cd01942 141 LARELAAGGITVSFDPGQELPRLS-----GEELEEILERADILFVNDYEAELLKERTGLSE------------------A 197 (279)
T ss_pred HHHHHHHcCCeEEEcchhhhhhcc-----HHHHHHHHhhCCEEecCHHHHHHHHhhcCCCh------------------H
Confidence 778888889999999986655443 3456778899999999999995 4444321 0
Q ss_pred HHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008161 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
. ...+++.||||+|++|++++.++..++++++ ++++ ++|||||||+|+|||+++|++| .++++|
T Consensus 198 ~-----~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~--~~~~--vvDttGAGDaf~a~~i~~l~~g-------~~l~~a 261 (279)
T cd01942 198 E-----LASGVRVVVVTLGPKGAIVFEDGEEVEVPAV--PAVK--VVDTTGAGDAFRAGFLYGLLRG-------YDLEES 261 (279)
T ss_pred H-----HhcCCCEEEEEECCCceEEEECCceEEccCc--CcCC--CcCCCCchHHHHHHHHHHHHcC-------CCHHHH
Confidence 1 1268899999999999999987755555442 1344 8999999999999999999999 999999
Q ss_pred HHHHHHHHHHHcccccc
Q 008161 523 IKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~ 539 (575)
+++|+++|++++++.|+
T Consensus 262 l~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 262 LRLGNLAASLKVERRGA 278 (279)
T ss_pred HHHHHHHHHHHHcccCC
Confidence 99999999999999987
No 23
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.5e-37 Score=319.52 Aligned_cols=291 Identities=24% Similarity=0.337 Sum_probs=235.9
Q ss_pred ccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhC
Q 008161 211 GSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVN 290 (575)
Q Consensus 211 G~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~ 290 (575)
|.+++|++..+ +++|. .+.......+...+||++.|+|++|++||.++.++|.||+|.+|+.+++.|++.
T Consensus 1 G~~~~D~~~~~---~~~p~-------~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~ 70 (293)
T TIGR02152 1 GSINMDLVLRT---DRLPK-------PGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSN 70 (293)
T ss_pred CCceEeEEEEe---CCCCC-------CCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHc
Confidence 78999999876 33432 122234567789999999999999999999999999999999999999999999
Q ss_pred CCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHHHHHHHHH
Q 008161 291 NVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKSTTLQAIK 368 (575)
Q Consensus 291 GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~ 368 (575)
||++.++.+.++.+|++++++++.+|++++. ..+++...+++++++ .+.+..++++++++ ....+.+.++++
T Consensus 71 gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 144 (293)
T TIGR02152 71 GIDTEYVGTVKDTPTGTAFITVDDTGENRIV-VVAGANAELTPEDIDAAEALIAESDIVLLQL-----EIPLETVLEAAK 144 (293)
T ss_pred CCCeeEEEEcCCCCCceEEEEEcCCCCEEEE-EECCcCCcCCHHHHHHHHhhhccCCEEEEec-----CCCHHHHHHHHH
Confidence 9999999887777899999999888888775 446666667777665 34678999999874 234567888999
Q ss_pred HHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHHHHH
Q 008161 369 ISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPL 448 (575)
Q Consensus 369 ~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L 448 (575)
.++++|++|++|++.... .....+++++|++++|++|+..+++....+..+ ..+.++.+
T Consensus 145 ~~~~~~~~v~~D~~~~~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~------------~~~~~~~l 203 (293)
T TIGR02152 145 IAKKHGVKVILNPAPAIK---------DLDDELLSLVDIITPNETEAEILTGIEVTDEED------------AEKAAEKL 203 (293)
T ss_pred HHHHcCCEEEEECCcCcc---------cchHHHHhcCCEEccCHHHHHHHhCCCCCCcch------------HHHHHHHH
Confidence 999999999999864321 112467889999999999999999875322111 12456677
Q ss_pred HhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHH
Q 008161 449 WHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAID 528 (575)
Q Consensus 449 ~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~a 528 (575)
+..|++.||||+|++|+++++++...++++ ++++ ++||+||||+|+|||+++|++| +++++|+++|++
T Consensus 204 ~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~---~~~~--~vdt~GAGDaf~Ag~l~~l~~g-------~~~~~al~~a~~ 271 (293)
T TIGR02152 204 LEKGVKNVIITLGSKGALLVSKDESKLIPA---FKVK--AVDTTAAGDTFNGAFAVALAEG-------KSLEDAIRFANA 271 (293)
T ss_pred HHcCCCeEEEEeCCCceEEEeCCceeEccC---CCCc--eeCCCCcHHHHHHHHHHHHHCC-------CCHHHHHHHHHH
Confidence 778999999999999999998775444432 3444 8999999999999999999999 999999999999
Q ss_pred HHHHHccccccCCCCCCHHHHH
Q 008161 529 CGVRDQWSQARTLGYPPKGGME 550 (575)
Q Consensus 529 aAA~~v~~~G~~~~~pt~eeve 550 (575)
+|+++|++.|+..++|++++|+
T Consensus 272 ~Aa~~~~~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 272 AAAISVTRKGAQSSIPYLEEVE 293 (293)
T ss_pred HHHHHHcccCcccCCCChHHcC
Confidence 9999999999998889888764
No 24
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=2.2e-37 Score=328.83 Aligned_cols=301 Identities=17% Similarity=0.164 Sum_probs=227.8
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
....|+|||.+++|++.... .++|.+ .. .+..+...+||++.|+|++|++||.+|.|+|.||+|.+|++
T Consensus 56 ~~~~v~viG~~~vD~~~~~~--~~~p~~-------~~--~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~ 124 (362)
T PRK09954 56 EQEYCVVVGAINMDIRGMAD--IRYPQA-------AS--HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGET 124 (362)
T ss_pred CCccEEEEEEEEEEEEEeeC--CcCcCC-------CC--CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHH
Confidence 33479999999999997652 134421 11 34677889999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchH
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
+++.|++.||+++++...++.+|+.++++++.++++.+.+..+.+...++++.++ ...+..++++++++. .+.
T Consensus 125 i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~ 199 (362)
T PRK09954 125 LLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNGSRDLIRHAGVVLADCN-----LTA 199 (362)
T ss_pred HHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECC-----CCH
Confidence 9999999999999998888888999888887665544433333344566665554 245678899988752 123
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+..+++.+ +++++++|+.... + ...+..+++++|++++|+.|++.|+|.......+
T Consensus 200 ~~~~~~~~~a--~~~~v~~D~~~~~--~------~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~------------ 257 (362)
T PRK09954 200 EALEWVFTLA--DEIPVFVDTVSEF--K------AGKIKHWLAHIHTLKPTQPELEILWGQAITSDAD------------ 257 (362)
T ss_pred HHHHHHHHhC--CCCcEEEECCCHH--H------hhhhhhhhccccEEecCHHHHHHHcCCCCCCHHH------------
Confidence 4455555554 4799999976321 0 1235678999999999999999999864332111
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEecCCC-eeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
..+.+..+++.|++.||||+|++|++++..++. .++++ +++. +||||||||+|+|||+++|++| +++
T Consensus 258 ~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~Ag~l~~l~~g-------~~~ 325 (362)
T PRK09954 258 RNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTA---PAHT--TVDSFGADDGFMAGLVYSFLEG-------YSF 325 (362)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccC---CCcc--cccccchHHHHHHHHHHHHHcC-------CCH
Confidence 124566777889999999999999998876543 23333 3454 8999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHccccccCCCCCCHHHHHhhh
Q 008161 520 VRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEV 553 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l 553 (575)
++|+++|+++|++++.+..+...-.+.+.+++++
T Consensus 326 ~eal~~a~a~Aal~~~s~~~~~~~~~~~~~~~~~ 359 (362)
T PRK09954 326 RDSARFAMACAAISRASGSLNNPTLSADNALSLV 359 (362)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHh
Confidence 9999999999999976555544446888888776
No 25
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=3.4e-37 Score=312.27 Aligned_cols=262 Identities=17% Similarity=0.212 Sum_probs=210.9
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|++||++++|++... ....+||+++|+|.+|++||.++.++|.||+|.+|+++++
T Consensus 1 ~v~~iG~~~~D~~~~~------------------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~ 56 (264)
T cd01940 1 RLAAIGDNVVDKYLHL------------------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRS 56 (264)
T ss_pred CeEEEcceEEEEeccC------------------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHH
Confidence 5899999999999531 2467899999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||+++++.+.+ .+|+.+++.. .+|+|++.+...++.....+.+.....+.+++++|++++.. .+.+.+
T Consensus 57 ~l~~~gI~~~~v~~~~-~~t~~~~~~~-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~ 129 (264)
T cd01940 57 TLKRLGVDISHCRVKE-GENAVADVEL-VDGDRIFGLSNKGGVAREHPFEADLEYLSQFDLVHTGIYSH-----EGHLEK 129 (264)
T ss_pred HHHHcCCChhheEEcC-CCCceEEEEe-cCCceEEEeecCCcHHhcccCcccHhHHhcCCEEEEccccc-----HHHHHH
Confidence 9999999999988755 4788887554 67888776554454433333333345678999999997532 456788
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.++++|++|+||++.+ |. .+.+..+++++|++++|.+|... .+ ..+.+
T Consensus 130 ~~~~a~~~g~~v~~D~~~~---~~-----~~~~~~~~~~~d~~~~~~~~~~~------~~---------------~~~~~ 180 (264)
T cd01940 130 ALQALVGAGALISFDFSDR---WD-----DDYLQLVCPYVDFAFFSASDLSD------EE---------------VKAKL 180 (264)
T ss_pred HHHHHHHcCCEEEEcCccc---CC-----HHHHHhhcccCCEEEechhhcCc------ch---------------HHHHH
Confidence 9999999999999999854 32 23466788999999999876521 00 12466
Q ss_pred HHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchh-HHHHHH
Q 008161 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY-LVRTIK 524 (575)
Q Consensus 446 ~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~s-l~eAl~ 524 (575)
+.+++.+++.||||+|++|++++.++...++++ ++++ ++|||||||+|+|||+++|++| ++ +++|++
T Consensus 181 ~~l~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~---~~~~--~vDttGAGDaf~ag~i~~l~~g-------~~~~~~al~ 248 (264)
T cd01940 181 KEAVSRGAKLVIVTRGEDGAIAYDGAVFYSVAP---RPVE--VVDTLGAGDSFIAGFLLSLLAG-------GTAIAEAMR 248 (264)
T ss_pred HHHHHcCCCEEEEEECCCCeEEEeCCeEEecCC---cCCC--CCCCCCchHHHHHHHHHHHHhC-------CchHHHHHH
Confidence 777788999999999999999998764434433 3444 8999999999999999999999 98 999999
Q ss_pred HHHHHHHHHcccccc
Q 008161 525 YAIDCGVRDQWSQAR 539 (575)
Q Consensus 525 ~A~aaAA~~v~~~G~ 539 (575)
+|+++|+++|++.|+
T Consensus 249 ~a~~~aa~~~~~~G~ 263 (264)
T cd01940 249 QGAQFAAKTCGHEGA 263 (264)
T ss_pred HHHHHHHHHhcccCC
Confidence 999999999999986
No 26
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=3.8e-36 Score=312.51 Aligned_cols=300 Identities=17% Similarity=0.200 Sum_probs=224.8
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
.++|++||.+++|++.... .+++++.. . .... ....+...+|| ++|+|.+|++||.+|.++|.||+|.+|+++
T Consensus 7 ~~~il~iG~~~iD~~~~~~-~~~~~~~~-~---~~~~-~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i 79 (315)
T TIGR02198 7 GAKVLVVGDVMLDRYWYGK-VSRISPEA-P---VPVV-KVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRL 79 (315)
T ss_pred CCcEEEECceeEeeeeeec-ccccCCCC-C---CceE-EEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHH
Confidence 4679999999999997631 12332110 0 0001 12455678899 799999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCcc----ccc--hhhhccCcEEEEeccccccc
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKS----EIN--IDVLKEAKMFYFSTHSMLER 357 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e----~i~--~~~l~~ad~v~~sg~~l~~~ 357 (575)
++.|++.||++.++.+.++.+|+.++++++.++ .+..........++.. .+. ...+++++++|++++.. ..
T Consensus 80 ~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~ 156 (315)
T TIGR02198 80 EALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQ--QLLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAK-GV 156 (315)
T ss_pred HHHHHHCCCCcceEEECCCCCcceEEEEEcCCe--EEEEecCCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCC-Cc
Confidence 999999999999988888788999988887633 2222222221223321 111 34578999999987642 22
Q ss_pred chHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccc
Q 008161 358 NMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 358 ~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+.+.+..+++.++++|++|+||++.. .| ..++++|++++|.+|++.|++... ...+
T Consensus 157 ~~~~~~~~~~~~a~~~g~~v~~D~~~~--~~-----------~~~~~~d~l~~n~~E~~~l~~~~~-~~~~--------- 213 (315)
T TIGR02198 157 LTPRVVQEVIAAARKHGKPVLVDPKGK--DF-----------SRYRGATLITPNRKEAEAAVGACD-TEAE--------- 213 (315)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEeCCCc--ch-----------hhcCCCcEECCCHHHHHHHhCCCC-CHHH---------
Confidence 346778899999999999999998733 11 246789999999999999998321 1111
Q ss_pred cCCcHHHHHHHHh-cCCcEEEEecCCcceEEEecC-CCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCC
Q 008161 438 VHYEPEVIAPLWH-ENLKVLFVTNGTSKVHYYTKE-DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITD 515 (575)
Q Consensus 438 ~~~~~e~~~~L~~-~g~k~VVVT~G~~Ga~v~~~~-~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d 515 (575)
..+.+..++. .|++.||||+|.+|++++.++ ..+++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 214 ---~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~---~~~~--vvdt~GAGDaf~ag~~~~l~~g------ 279 (315)
T TIGR02198 214 ---LVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPA---QARE--VYDVTGAGDTVIATLALALAAG------ 279 (315)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecC---CCCC--CCCCcCccHHHHHHHHHHHHcC------
Confidence 1245555553 589999999999999998853 3344443 3444 8999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhh
Q 008161 516 KGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEV 553 (575)
Q Consensus 516 ~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l 553 (575)
+++++|+++|+++|+++|++.|+.. +++++++..|
T Consensus 280 -~~~~~al~~A~~~aa~~~~~~G~~~--~~~~~~~~~~ 314 (315)
T TIGR02198 280 -ASLEEACRLANAAAGVVVGKLGTAT--VSPAELANAL 314 (315)
T ss_pred -CCHHHHHHHHHHHhhhhhccCCCCC--CCHHHHHHHh
Confidence 9999999999999999999999963 7999998776
No 27
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=2.1e-36 Score=312.56 Aligned_cols=290 Identities=18% Similarity=0.175 Sum_probs=216.7
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+|||++++|+++.... +++|++. +.... ........+|| ++|+|.+|++||.++.++|.||+|.+|+++++
T Consensus 1 ~vl~iG~~~~D~~~~~~~-~~~~~~~---~~~~~--~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~ 73 (304)
T cd01172 1 KVLVVGDVILDEYLYGDV-ERISPEA---PVPVV--KVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRK 73 (304)
T ss_pred CEEEEcceeEEeeEeecc-ccccCCC---CcceE--EeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHH
Confidence 589999999999976421 2443211 00011 12346678999 68999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccc------cchhhhccCcEEEEecccccccch
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSE------INIDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~------i~~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
.|++.||++.++ ..++.+|++++++++. +++.+.+. ......++... .....+++++++|++++.. ....
T Consensus 74 ~l~~~gI~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~-~~~~ 149 (304)
T cd01172 74 LLEKEGIDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVD-REDDSPLSAEEEQRLIERIAERLPEADVVILSDYGK-GVLT 149 (304)
T ss_pred HHHhCCCCcceE-ecCCCCceEEEEEecC-CcEEEEEe-cCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCC-CccC
Confidence 999999999985 4566678888887765 45544332 22222333221 1134578999999987531 2234
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccC
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.++++|++|+||++.+. | .+++++|+|++|++|++.+++.......+
T Consensus 150 ~~~~~~~~~~a~~~~~~v~~D~~~~~--~-----------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~----------- 205 (304)
T cd01172 150 PRVIEALIAAARELGIPVLVDPKGRD--Y-----------SKYRGATLLTPNEKEAREALGDEINDDDE----------- 205 (304)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCcc--h-----------hhccCCcEeCCCHHHHHHHhCCCCCChHH-----------
Confidence 56788899999999999999987432 1 45789999999999999999864322111
Q ss_pred CcHHHHHHHHh-cCCcEEEEecCCcceEEEe-cCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCch
Q 008161 440 YEPEVIAPLWH-ENLKVLFVTNGTSKVHYYT-KEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 440 ~~~e~~~~L~~-~g~k~VVVT~G~~Ga~v~~-~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.++. .|++.||||+|.+|+++++ ++..+++++ ++++ +||||||||+|+|||+++|++| +
T Consensus 206 -~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~~~--vvdttGAGDaf~ag~i~~l~~g-------~ 272 (304)
T cd01172 206 -LEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPA---LAKE--VYDVTGAGDTVIATLALALAAG-------A 272 (304)
T ss_pred -HHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecC---CCCC--CCCCcCccHHHHHHHHHHHHcC-------C
Confidence 1234555553 5899999999999999998 544445554 3444 8999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHccccccCCCC
Q 008161 518 YLVRTIKYAIDCGVRDQWSQARTLGY 543 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~~~ 543 (575)
++++|+++|+++|+++|++.|+...+
T Consensus 273 ~~~~al~~a~a~Aa~~~~~~g~~~~~ 298 (304)
T cd01172 273 DLEEAAFLANAAAGVVVGKVGTAPVT 298 (304)
T ss_pred CHHHHHHHHHHHhheeeecCCCCCcC
Confidence 99999999999999999999997543
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=4.7e-36 Score=309.86 Aligned_cols=291 Identities=18% Similarity=0.149 Sum_probs=226.1
Q ss_pred EEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHH
Q 008161 209 CFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMN 288 (575)
Q Consensus 209 viG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~ 288 (575)
|.=++++|++... +++|+ +.......+..++||+++|+|++|++||.+|.++|.||+| +|+.+++.|+
T Consensus 4 ~~~~~~~D~~~~~---~~~~~--------g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~ 71 (304)
T TIGR03828 4 VTLNPAIDLTIEL---DGLTL--------GEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLR 71 (304)
T ss_pred EEcchHHeEEEEc---ccccc--------CceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHH
Confidence 3346788999876 34552 1222346778999999999999999999999999999999 6999999999
Q ss_pred hCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecccccccchHHH
Q 008161 289 VNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 289 ~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~------~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+.||+++++...+ .|++++++++.+|+++++ ...++ .++..+++. +.+.+++++|++++... ..+.+.
T Consensus 72 ~~gId~~~~~~~~--~t~~~~~~~~~~g~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~-~~~~~~ 145 (304)
T TIGR03828 72 EEGIKTDFVRVPG--ETRINVKIKEPSGTETKL-NGPGP--EISEEELEALLEKLRAQLAEGDWLVLSGSLPP-GVPPDF 145 (304)
T ss_pred HCCCcceEEECCC--CCeeeEEEEeCCCCEEEE-ECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCCC-CCCHHH
Confidence 9999999987653 577788888777876554 44443 344444331 25778999999986321 124567
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcH
Q 008161 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+..+++.++++|.+++||++.. .+ ...+...+||+++|+.|++.|+|.......+ ..
T Consensus 146 ~~~~~~~~~~~~~~v~~D~~~~-~~----------~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~------------~~ 202 (304)
T TIGR03828 146 YAELIALAREKGAKVILDTSGE-AL----------RDGLKAKPFLIKPNDEELEELFGRELKTLEE------------II 202 (304)
T ss_pred HHHHHHHHHHcCCEEEEECChH-HH----------HHHHhcCCcEECcCHHHHHHHhCCCCCCHHH------------HH
Confidence 8889999999999999998632 11 1223345799999999999999875322111 12
Q ss_pred HHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008161 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
+.++.+++.|++.||||+|.+|++++.+++..+++. ++++ ++|||||||+|+|||+++|++| +++++|
T Consensus 203 ~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~~~--vvDttGAGDaF~a~~l~~l~~g-------~~~~~a 270 (304)
T TIGR03828 203 EAARELLDLGAENVLISLGADGALLVTKEGALFAQP---PKGE--VVSTVGAGDSMVAGFLAGLESG-------LSLEEA 270 (304)
T ss_pred HHHHHHHHcCCCEEEEccCCCCcEEEcCCceEEEeC---CCcc--ccCCcChHHHHHHHHHHHHHcC-------CCHHHH
Confidence 556777788999999999999999998776544443 3444 7999999999999999999999 999999
Q ss_pred HHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 523 IKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
+++|+++|+++|++.|+ .+|++++++.+|.
T Consensus 271 ~~~a~~~Aa~~~~~~G~--~~p~~~~~~~~~~ 300 (304)
T TIGR03828 271 LRLAVAAGSAAAFSEGT--GLPDPEDIEELLP 300 (304)
T ss_pred HHHHHHHHHHHhcCcCC--CCCCHHHHHHHHh
Confidence 99999999999999998 4899999999884
No 29
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=2.1e-36 Score=311.20 Aligned_cols=278 Identities=15% Similarity=0.130 Sum_probs=211.7
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
.|+|+|++++|++..+ +++|.. +...........+||+++|+|++|++||.++.++|.||+|.+|+++++
T Consensus 1 ~v~~iG~~~vD~~~~v---~~~p~~-------~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~ 70 (290)
T cd01939 1 AVLCVGLTVLDFITTV---DKYPFE-------DSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLD 70 (290)
T ss_pred CEEEEeeeeeEEEeee---cCCCCC-------CcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHH
Confidence 3899999999999876 344421 111122445688999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++.++.+.++..+..++++++.+|+|++++ ..++...++.++++...+++++++|++++.. ....+
T Consensus 71 ~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~ 143 (290)
T cd01939 71 DFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIV-NDNNLPEVTYDDFSKIDLTQYGWIHFEGRNP------DETLR 143 (290)
T ss_pred HHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEE-eCCCCCCCCHHHHhhhhhccCCEEEEeccCH------HHHHH
Confidence 9999999999986665555666777777778887754 3455567777777655568999999997532 34556
Q ss_pred HHHHHhhcC-------CEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccccccc
Q 008161 366 AIKISKQFG-------GIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 366 ll~~ak~~G-------~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
+++.+++.+ +++++|++... +.+..+++++|++++|++|++.+ +....
T Consensus 144 ~~~~~~~~~~~~~~~~~~v~~d~~~~~----------~~~~~~l~~~di~~~n~~~~~~~-~~~~~-------------- 198 (290)
T cd01939 144 MMQHIEEHNNRRPEIRITISVEVEKPR----------EELLELAAYCDVVFVSKDWAQSR-GYKSP-------------- 198 (290)
T ss_pred HHHHHHHhcCcCCCcceEEEEEeccCc----------hhhhhHHhhCCEEEEEhHHHHhc-CcCCH--------------
Confidence 777777666 68889976432 22447889999999999988764 54211
Q ss_pred CCcHHHHHH--HHhcCCcEEEEecCCcceEEEecCCC-eeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCC
Q 008161 439 HYEPEVIAP--LWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITD 515 (575)
Q Consensus 439 ~~~~e~~~~--L~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d 515 (575)
.+.+.. +...+++.||||+|++|++++.+++. .++++++ ..+ +||||||||+|+|||+++|++|
T Consensus 199 ---~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~--~~~--vvDt~GAGDsf~agfl~~l~~g------ 265 (290)
T cd01939 199 ---EECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHK--PIR--VVDTLGAGDTFNAAVIYALNKG------ 265 (290)
T ss_pred ---HHHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCC--CCC--cccCCCchHHHHHHHHHHHHcC------
Confidence 122222 22347899999999999999886433 3444431 122 7999999999999999999999
Q ss_pred chh-HHHHHHHHHHHHHHHcccccc
Q 008161 516 KGY-LVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 516 ~~s-l~eAl~~A~aaAA~~v~~~G~ 539 (575)
++ +++|+++|+++|++++++.|.
T Consensus 266 -~~~~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 266 -PDDLSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred -CccHHHHHHHHHHHHHHHHhhhcC
Confidence 85 999999999999999999885
No 30
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=5.8e-36 Score=303.66 Aligned_cols=264 Identities=18% Similarity=0.217 Sum_probs=210.3
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+|+|++++|++..+. .+|.+ +.......+...+||+++|+|++|++||.++.++|.||+|.+|+.+++
T Consensus 1 ~il~iG~~~iD~~~~~~---~~~~~-------~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~ 70 (265)
T cd01947 1 KIAVVGHVEWDIFLSLD---APPQP-------GGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLE 70 (265)
T ss_pred CEEEEeeeeEEEEEEec---CCCCC-------CceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHH
Confidence 58999999999998752 33321 122245678899999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++ ++++.++... +..|+.++++++.+|+|++.+ ..+.. .+++++..+..++++|+++.. ...+
T Consensus 71 ~l~~-~~~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~ 135 (265)
T cd01947 71 ELES-GGDKHTVAWR-DKPTRKTLSFIDPNGERTITV-PGERL----EDDLKWPILDEGDGVFITAAA--------VDKE 135 (265)
T ss_pred HHHh-cCCcceEEec-CCCCceEEEEECCCCcceEEe-cCCCC----cccCCHhHhccCCEEEEeccc--------ccHH
Confidence 9999 9998887654 458999999998889987753 33221 344555678899999999753 1245
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.+++.+ .+++|++.+... ..+.++++++|++++|++|+..+++ +
T Consensus 136 ~~~~a~~~~-~~~~d~~~~~~~--------~~~~~~~~~~d~~~~n~~e~~~l~~------------------------~ 182 (265)
T cd01947 136 AIRKCRETK-LVILQVTPRVRV--------DELNQALIPLDILIGSRLDPGELVV------------------------A 182 (265)
T ss_pred HHHHHHHhC-CeEeccCccccc--------hhHHHHhhhCCEEEeCHHHHHHhhh------------------------H
Confidence 667777665 578898754332 2456788999999999999988753 2
Q ss_pred HHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHH
Q 008161 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKY 525 (575)
Q Consensus 446 ~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~ 525 (575)
+.+...+++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +++++|+++
T Consensus 183 ~~~~~~~~~~viit~G~~Ga~~~~~~~~~~~~~---~~~~--vvDttGAGDaF~ag~l~~l~~g-------~~~~~al~~ 250 (265)
T cd01947 183 EKIAGPFPRYLIVTEGELGAILYPGGRYNHVPA---KKAK--VPDSTGAGDSFAAGFIYGLLKG-------WSIEEALEL 250 (265)
T ss_pred HHHHhccCCEEEEEeCCCCeEEEECCeeEECCC---CCCC--CCCCCCchHHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 345567899999999999999998765334443 3444 8999999999999999999999 999999999
Q ss_pred HHHHHHHHcccccc
Q 008161 526 AIDCGVRDQWSQAR 539 (575)
Q Consensus 526 A~aaAA~~v~~~G~ 539 (575)
|+++|++++++.|+
T Consensus 251 a~~~Aa~~v~~~G~ 264 (265)
T cd01947 251 GAQCGAICVSHFGP 264 (265)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999999986
No 31
>PLN02548 adenosine kinase
Probab=100.00 E-value=1.1e-35 Score=311.74 Aligned_cols=302 Identities=15% Similarity=0.176 Sum_probs=221.8
Q ss_pred EccceeeeeccCCC----------CCCcchhhhhhhhcccccCCCceEEecCChHHHHHHH---HHHcCCCeEEEEEeCC
Q 008161 210 FGSAQHAFVPSGRP----------ANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIA---LARLGGKVAFMGKLGD 276 (575)
Q Consensus 210 iG~~~iD~i~~~~~----------~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~a---LarLG~~v~lvg~VG~ 276 (575)
+|++++|++....+ ..+...+..+.+..+.......+...+||+++|+|.+ |++||.++.|+|.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~ 80 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGK 80 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcC
Confidence 47777777755321 0111112222233333334567889999999998654 4567999999999999
Q ss_pred ChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc----hhhhccCcEEEEecc
Q 008161 277 DEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN----IDVLKEAKMFYFSTH 352 (575)
Q Consensus 277 D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~----~~~l~~ad~v~~sg~ 352 (575)
|.+|+++++.|++.||+++++. ..+.+|++++++++ +|+|.+. ...++...++.+++. +..+..++++|++|+
T Consensus 81 D~~g~~i~~~L~~~gVd~~~~~-~~~~~T~~~~i~~~-~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 157 (332)
T PLN02548 81 DKFGEEMKKCATAAGVNVHYYE-DESTPTGTCAVLVV-GGERSLV-ANLSAANCYKVEHLKKPENWALVEKAKFYYIAGF 157 (332)
T ss_pred ChhHHHHHHHHHHcCCceeeec-cCCCCCceEEEEEe-cCCceee-eccchhhcCCHHHhcChhhHhHHhhCCEEEEEEE
Confidence 9999999999999999999875 46678999988885 6888774 445555555555442 345788999999986
Q ss_pred cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccc
Q 008161 353 SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNN 432 (575)
Q Consensus 353 ~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~ 432 (575)
.+. ...+.+..+++.++++|.++.+|++ .++|. +...+.+.++++++|++++|++|+..|+|.......+
T Consensus 158 ~~~--~~~~~~~~~~~~a~~~g~~~~~~~~--~~~~~--~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~---- 227 (332)
T PLN02548 158 FLT--VSPESIMLVAEHAAANNKTFMMNLS--APFIC--EFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETED---- 227 (332)
T ss_pred Ecc--CCHHHHHHHHHHHHHcCCEEEEECC--ChhHH--HHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCccc----
Confidence 432 2346778888989999988877764 34553 2234567889999999999999999998864321111
Q ss_pred ccccccCCcHHHHHHHHh------cCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHH
Q 008161 433 ARSKFVHYEPEVIAPLWH------ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRML 506 (575)
Q Consensus 433 ~~~~~~~~~~e~~~~L~~------~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L 506 (575)
..+.+..+.. .+++.||||+|++|++++.++...++++++.++++ +||||||||+|+|||+++|
T Consensus 228 --------~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~--vvDttGAGDaF~ag~l~~l 297 (332)
T PLN02548 228 --------VEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEK--LVDTNGAGDAFVGGFLSQL 297 (332)
T ss_pred --------HHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCc--cccCCCchHHHHHHHHHHH
Confidence 1123333322 15789999999999999987765566654333333 8999999999999999999
Q ss_pred HcCCCCCCCchhHHHHHHHHHHHHHHHccccccCC
Q 008161 507 TVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTL 541 (575)
Q Consensus 507 ~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~ 541 (575)
++| +++++|+++|+++|+++|++.|+..
T Consensus 298 ~~g-------~~l~eal~~a~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 298 VQG-------KDIEECVRAGNYAANVIIQRSGCTY 325 (332)
T ss_pred HcC-------CCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999 9999999999999999999999863
No 32
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=2.3e-36 Score=317.05 Aligned_cols=297 Identities=13% Similarity=0.025 Sum_probs=225.4
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHc-CC--Ce--EEEEEeCCChHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARL-GG--KV--AFMGKLGDDEYG 280 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarL-G~--~v--~lvg~VG~D~~G 280 (575)
+|+++|++++|++.... ...+...+||+++|+|+++++| |. ++ .+++.+|+| +|
T Consensus 1 ~~~~~G~~~~d~i~~~~--------------------~~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G 59 (328)
T cd01943 1 DFTTLGMFIIDEIEYPD--------------------SEPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FP 59 (328)
T ss_pred CccccCcEEeeccccCC--------------------CCccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CC
Confidence 47899999999997541 0355678999999999999999 44 66 889999999 99
Q ss_pred HHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchH
Q 008161 281 QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 281 ~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
+++++.|++.||++++ ...++.+|++++++++++|+|.+. ...++...+++++++...+..++++|+++... ...
T Consensus 60 ~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~-~~~~~~~~~~~~~l~~~~~~~a~~~hl~~~~~---~~~ 134 (328)
T cd01943 60 KSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFK-YLTPKKRIDVSDDLNSTPLIRSSCIHLICSPE---RCA 134 (328)
T ss_pred HHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceee-ecCcccccccccccccccccCCCeEEEECCHH---HHH
Confidence 9999999999999988 667778899999888888887654 45566677888888766688899999987532 133
Q ss_pred HHHHHHHHHHhh------cCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccc
Q 008161 361 STTLQAIKISKQ------FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 361 e~~~~ll~~ak~------~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
+.+.++++.+++ +|..+++|++... +. ....+.+..+++++|+|++|++|+..|+|..........
T Consensus 135 ~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~--~~--~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~---- 206 (328)
T cd01943 135 SIVDDIINLFKLLKGNSPTRPKIVWEPLPDS--CD--PENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDE---- 206 (328)
T ss_pred HHHHHHHHHHHhhccccCCccEEEEecCCcc--cC--hhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchh----
Confidence 677888899888 7888999976221 10 012345788999999999999999999987532211000
Q ss_pred ccccCCcHH------HHHHHHhcCCcEEEEecCCcceEEEec--CCCeeEecccCCCCCCcccCccCchHHHHHHHHHHH
Q 008161 435 SKFVHYEPE------VIAPLWHENLKVLFVTNGTSKVHYYTK--EDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRML 506 (575)
Q Consensus 435 ~~~~~~~~e------~~~~L~~~g~k~VVVT~G~~Ga~v~~~--~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L 506 (575)
... ....+...+++.||||+|++|++++.. +...++++++..+.+ ++|||||||+|+|||+++|
T Consensus 207 ------~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~--vvDttGAGDaF~agfl~~l 278 (328)
T cd01943 207 ------EKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTK--VVDPTGGGNSFLGGFAAGL 278 (328)
T ss_pred ------hhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCc--ccCCCCchHHHHHHHHHHH
Confidence 001 111224568899999999999999984 333445543221124 8999999999999999999
Q ss_pred HcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhh
Q 008161 507 TVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEV 553 (575)
Q Consensus 507 ~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l 553 (575)
++| +++++|+++|+++|++++++.|.. ..++++=+.++
T Consensus 279 ~~g-------~~~~~al~~a~a~Aa~~v~~~G~~--~~~~~~~~~~~ 316 (328)
T cd01943 279 ALT-------KSIDEACIYGSVAASFAIEQVGLP--RLTKVEGEELW 316 (328)
T ss_pred HcC-------CCHHHHHHHHHHHHHHHHccCCCC--cccCCCccccc
Confidence 999 999999999999999999999952 23444434444
No 33
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.6e-35 Score=303.30 Aligned_cols=282 Identities=22% Similarity=0.235 Sum_probs=217.2
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
.|+++|++++|++.... ++|.+ .+. .+......+||+++|+|++|++||.++.++|.||+|.+|+.+++
T Consensus 1 ~v~~~G~~~~D~~~~~~---~~~~~------~~~--~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~ 69 (288)
T cd01941 1 EIVVIGAANIDLRGKVS---GSLVP------GTS--NPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILE 69 (288)
T ss_pred CeEEEEeEEEeeeeccc---Ccccc------CCC--CCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHH
Confidence 38999999999997753 33321 111 22456789999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
.|++.||++.++. ..+.+|+.++++++.+|++.+.+..+.....++.+.++ ...+..++++++++. .+...+
T Consensus 70 ~L~~~gI~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~~~ 143 (288)
T cd01941 70 ESEKAGLNVRGIV-FEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKPIVVDAN-----LPEEAL 143 (288)
T ss_pred HHHHcCCccceee-eCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CCHHHH
Confidence 9999999999887 56778999999998889987644444444444443332 346789999998753 234567
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHH
Q 008161 364 LQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPE 443 (575)
Q Consensus 364 ~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e 443 (575)
..+++.+++.+.++++|++....+ .+ +..+++++|+|++|++|+..+++........ ...
T Consensus 144 ~~~~~~a~~~~~~v~~d~~~~~~~-------~~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~------------~~~ 203 (288)
T cd01941 144 EYLLALAAKHGVPVAFEPTSAPKL-------KK-LFYLLHAIDLLTPNRAELEALAGALIENNED------------ENK 203 (288)
T ss_pred HHHHHhhhhcCCcEEEEccchHHh-------cc-chhhcccceEEeCCHHHHHHHhCcccCCchh------------HHH
Confidence 788888999999999998633221 11 1158899999999999999999865321100 113
Q ss_pred HHHHHHhcCCcEEEEecCCcceEEEec--CC-CeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 444 VIAPLWHENLKVLFVTNGTSKVHYYTK--ED-DGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 444 ~~~~L~~~g~k~VVVT~G~~Ga~v~~~--~~-~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.++.+...+++.||||+|.+|++++++ +. ..+++++ .+++ +||||||||+|+|||+++|++| ++++
T Consensus 204 ~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~--~~~~--~vDttGAGDaf~a~~~~~l~~g-------~~~~ 272 (288)
T cd01941 204 AAKILLLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAP--QPET--VVNVTGAGDAFVAGLVAGLLEG-------MSLD 272 (288)
T ss_pred HHHHHHHcCCcEEEEEeCCCcEEEEecCCCceeEEecCC--CCcc--ceeCCCcHHHHHHHHHHHHHcC-------CCHH
Confidence 455666779999999999999999987 32 2344431 2333 8999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcc
Q 008161 521 RTIKYAIDCGVRDQW 535 (575)
Q Consensus 521 eAl~~A~aaAA~~v~ 535 (575)
+|+++|+++|+++|+
T Consensus 273 ~al~~a~~~Aa~~~~ 287 (288)
T cd01941 273 DSLRFAQAAAALTLE 287 (288)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999986
No 34
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=1.2e-35 Score=301.11 Aligned_cols=259 Identities=15% Similarity=0.105 Sum_probs=205.3
Q ss_pred CcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008161 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~ 284 (575)
|+|++||++++|+++... ..++||++.|+|.+|++||.++.++|.||+|.+|++++
T Consensus 1 ~~v~~iG~~~~D~~~~~~------------------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~ 56 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG------------------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLK 56 (260)
T ss_pred CeEEEeccceeeecccCC------------------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHH
Confidence 579999999999996431 15789999999999999999999999999999999999
Q ss_pred HHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHH
Q 008161 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTL 364 (575)
Q Consensus 285 ~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~ 364 (575)
+.|++.||+++++.+.++ +|+.+++.++ .|+|.+.....++...+..++.+.+.+..++++|++.+. ...
T Consensus 57 ~~l~~~gI~~~~~~~~~~-~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~--------~~~ 126 (260)
T PRK09813 57 QDLARMGVDISHVHTKHG-VTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVHAAIWG--------HAE 126 (260)
T ss_pred HHHHHcCCcchheeeecC-CCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEEEEeccc--------hHH
Confidence 999999999999987654 6888877775 577776534345444444444444668899999997421 124
Q ss_pred HHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHH
Q 008161 365 QAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 365 ~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
++++.++++|++|+||++.+.. ...+..+++++|++++|..+... + ..+.
T Consensus 127 ~~~~~~~~~~~~v~~D~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~----------~------------~~~~ 176 (260)
T PRK09813 127 DAFPQLHAAGKLTAFDFSDKWD--------SPLWQTLVPHLDYAFASAPQEDE----------F------------LRLK 176 (260)
T ss_pred HHHHHHHHcCCeEEEEcCCCcc--------HHHHHHhCCceeEEEecCCcchH----------H------------HHHH
Confidence 5677788899999999975421 23456789999999988642110 0 1255
Q ss_pred HHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHH
Q 008161 445 IAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIK 524 (575)
Q Consensus 445 ~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~ 524 (575)
+..+.+.|++.||||+|++|++++.+++..++++ .+++ ++|||||||+|+|||+++|++| +++++|++
T Consensus 177 ~~~~~~~g~~~viit~G~~Ga~~~~~~~~~~~~~---~~~~--~vDttGAGDaF~ag~i~~~~~g-------~~~~~al~ 244 (260)
T PRK09813 177 MKAIVARGAGVVIVTLGENGSIAWDGAQFWRQAP---EPVT--VVDTMGAGDSFIAGFLCGWLAG-------MTLPQAMA 244 (260)
T ss_pred HHHHHHcCCCEEEEEECCCceEEEECCEEEecCC---cccC--CCCCCCchHHHHHHHHHHHHcC-------CCHHHHHH
Confidence 6667788999999999999999998765444444 3444 8999999999999999999999 99999999
Q ss_pred HHHHHHHHHcccccc
Q 008161 525 YAIDCGVRDQWSQAR 539 (575)
Q Consensus 525 ~A~aaAA~~v~~~G~ 539 (575)
+|+++|++++++.|+
T Consensus 245 ~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 245 QGTACAAKTIQYHGA 259 (260)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999999986
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=8.3e-35 Score=302.25 Aligned_cols=294 Identities=17% Similarity=0.129 Sum_probs=222.1
Q ss_pred EEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHH
Q 008161 207 VCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYY 286 (575)
Q Consensus 207 VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~ 286 (575)
+.+..++++|.+... ++++.. .......+...+||++.|+|++|++||.++.++|.||+ .+|+++++.
T Consensus 3 ~~~t~np~~D~~~~~---~~~~~~--------~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~ 70 (309)
T PRK13508 3 LTVTLNPSIDISYPL---DELKLD--------TVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEH 70 (309)
T ss_pred EEEecChHHeEEEEe---CCeeeC--------CeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHH
Confidence 456678999998776 355432 11123567899999999999999999999999999996 689999999
Q ss_pred HHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc------hhhhccCcEEEEecccccccchH
Q 008161 287 MNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN------IDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 287 L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~------~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
|++ ||++.++.. . ..|+.++++++ +|++++. ...++. ++.+... ...+.+++++|++|+.... ...
T Consensus 71 l~~-gI~~~~~~~-~-~~t~~~~~~~~-~g~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~ 142 (309)
T PRK13508 71 LDD-QIKHAFYKI-K-GETRNCIAILH-EGQQTEI-LEKGPE--ISVQEADGFLHHFKQLLESVEVVAISGSLPAG-LPV 142 (309)
T ss_pred HHc-CCCceEEEC-C-CCCeeeEEEEe-CCCEEEE-ECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCCC-cCH
Confidence 999 999987654 3 35777777775 6787765 444442 3333221 2357899999999864211 234
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+..+++.+++.|++++||++... ...+...+.++|+|++|.+|+..++|.......+.
T Consensus 143 ~~~~~~~~~a~~~g~~v~~D~~~~~---------~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~----------- 202 (309)
T PRK13508 143 DYYAQLIELANQAGKPVVLDCSGAA---------LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDE----------- 202 (309)
T ss_pred HHHHHHHHHHHHCCCEEEEECCcHH---------HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHH-----------
Confidence 6678889999999999999986321 11233345789999999999999998643211000
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..+.+..++..|++.||||+|++|++++.++...++++ ++++ +||||||||+|+|||+++|++| ++++
T Consensus 203 ~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~Agfi~~l~~g-------~~~~ 270 (309)
T PRK13508 203 LKEVLQQPLFEGIEWIIVSLGADGAFAKHNDTFYKVDI---PKIE--VVNPVGSGDSTVAGIASGLLHQ-------EDDA 270 (309)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCceEEEeCCceEEEeC---CCcc--ccCCcChhHHHHHHHHHHHHcC-------CCHH
Confidence 12445556667999999999999999987765444443 3454 8999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
+|+++|+++|++++++.+. +..++.+++++++
T Consensus 271 ~al~~a~a~aa~~~~~~~~--~~~~~~~~~~~~~ 302 (309)
T PRK13508 271 DLLKKANVLGMLNAQEKQT--GHVNMANYDELYN 302 (309)
T ss_pred HHHHHHHHHHHHHhcCcCc--CCCCHHHHHHHHh
Confidence 9999999999999999998 4678888888864
No 36
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=2.2e-34 Score=299.42 Aligned_cols=293 Identities=14% Similarity=0.069 Sum_probs=225.9
Q ss_pred EE-EEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 207 VC-CFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 207 Vl-viG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
|+ |.=+.++|++... +++|. +.......+.+++||+++|+|++|++||.++.++|.||+|.+|++ ++
T Consensus 5 ~~~~~~~p~~D~~~~~---~~~~~--------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~ 72 (312)
T PRK09513 5 VATITLNPAYDLVGFC---PEIER--------GEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQ 72 (312)
T ss_pred EEEEecChHHeEEEEc---Cceec--------CCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HH
Confidence 44 4447889999765 34542 223345788899999999999999999999999999999999987 58
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc------hhhhccCcEEEEecccccccch
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN------IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~------~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
.|++.||++.++. .++ .|++++++++.+|++++. ...+. .+++.+.+ ...++++++||++|+... ...
T Consensus 73 ~l~~~gv~~~~~~-~~~-~t~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~-~~~ 146 (312)
T PRK09513 73 LFSELGIANRFQV-VQG-RTRINVKLTEKDGEVTDF-NFSGF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLPR-GVS 146 (312)
T ss_pred HHHHcCCCccEEE-CCC-CCEEEEEEEeCCCcEEEE-eCCCC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCCC-CCC
Confidence 8999999987764 343 688888888878887654 33332 24333321 245789999999986432 235
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccC
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.+++.|.+++||++.. . ....+..+++++++|.+|+..++|.......+
T Consensus 147 ~~~~~~~~~~a~~~g~~v~~D~~~~-~----------~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~----------- 204 (312)
T PRK09513 147 PEAFTDWMTRLRSQCPCIIFDSSRE-A----------LVAGLKAAPWLVKPNRRELEIWAGRKLPELKD----------- 204 (312)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChH-H----------HHHHhccCCeEEcCCHHHHHHHhCCCCCCHHH-----------
Confidence 6778889999999999999998721 1 12234457899999999999999875332111
Q ss_pred CcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhH
Q 008161 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 440 ~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
..+.+..+.+.|++.||||+|.+|++++.+++..+++. +.++ ++|||||||+|+|||+++|++| +++
T Consensus 205 -~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~--~vDttGAGDaf~ag~i~~l~~g-------~~~ 271 (312)
T PRK09513 205 -VIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKP---PACD--VVSTVGAGDSMVGGLIYGLLMR-------ESS 271 (312)
T ss_pred -HHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCceEEecC---CCcc--ccCCCChHHHHHHHHHHHHHcC-------CCH
Confidence 12456667778999999999999999988765444443 3344 8999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 520 VRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
++|+++|+++|++++++.|. ++|++++++++|.
T Consensus 272 ~~a~~~A~a~Aa~~~~~~~~--~~~~~~e~~~~l~ 304 (312)
T PRK09513 272 EHTLRLATAVSALAVSQSNV--GITDRPQLAAMMA 304 (312)
T ss_pred HHHHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHh
Confidence 99999999999999999974 7899999999983
No 37
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=1.9e-34 Score=298.32 Aligned_cols=289 Identities=19% Similarity=0.197 Sum_probs=222.4
Q ss_pred cceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCC
Q 008161 212 SAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNN 291 (575)
Q Consensus 212 ~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~G 291 (575)
++.+|++..+. +++. +....+......+||++.|+|++|++||.++.++|.||+| +|+.+++.|++.|
T Consensus 7 ~~~~D~~~~~~---~~~~--------~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~g 74 (303)
T TIGR03168 7 NPAIDLTIEVD---GLTP--------GEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEG 74 (303)
T ss_pred chHHeEEEEcC---cccc--------CceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcC
Confidence 45677776652 2221 1222346678999999999999999999999999999998 7999999999999
Q ss_pred CccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecccccccchHHHHHH
Q 008161 292 VQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 292 Vdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~------~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
|++.++... ..|+.++++++.+|++..+ ...+. .++.++++. +.+++++++|++++... ....+.+..
T Consensus 75 I~~~~i~~~--~~t~~~~~~~~~~g~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~-~~~~~~~~~ 148 (303)
T TIGR03168 75 IKNDFVEVK--GETRINVKIKESSGEETEL-NEPGP--EISEEELEQLLEKLRELLASGDIVVISGSLPP-GVPPDFYAQ 148 (303)
T ss_pred CCceEEECC--CCCEEeEEEEeCCCCEEEE-eCcCC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCCC-CCCHHHHHH
Confidence 999998764 3567777777777765543 33332 355554431 34789999999885321 124567788
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.++++|++|+||++.. .+ ...+..++|++++|+.|+..++|.......+ ..+.+
T Consensus 149 ~~~~~~~~g~~v~~D~~~~-~~----------~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~------------~~~~~ 205 (303)
T TIGR03168 149 LIAIARKRGAKVILDTSGE-AL----------REALAAKPFLIKPNHEELEELFGRELKTEEE------------IIEAA 205 (303)
T ss_pred HHHHHHHCCCEEEEECCcH-HH----------HHHHhcCCcEECCCHHHHHHHhCCCCCCHHH------------HHHHH
Confidence 8999999999999998632 12 1223357999999999999999875332111 12556
Q ss_pred HHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHH
Q 008161 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKY 525 (575)
Q Consensus 446 ~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~ 525 (575)
+.++..+++.||||+|.+|++++.+++..++++ ++++ ++|||||||+|+|||+++|++| +++.+|+++
T Consensus 206 ~~l~~~g~~~vviT~g~~G~~~~~~~~~~~~~~---~~~~--~vDttGAGD~F~a~~~~~l~~g-------~~i~~a~~~ 273 (303)
T TIGR03168 206 RELLDRGAENVLVSLGADGALLVTKEGALKATP---PKVE--VVNTVGAGDSMVAGFLAGLARG-------LSLEEALRF 273 (303)
T ss_pred HHHHHcCCCEEEEeecCCCcEEEeCCceEEeeC---Ccce--eecCcCHHHHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 667778999999999999999998876555544 3444 7999999999999999999999 999999999
Q ss_pred HHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 526 AIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 526 A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
|+++|+++|++.|+. .|+++++++++.+
T Consensus 274 A~~~aa~~~~~~G~~--~~~~~~~~~~~~~ 301 (303)
T TIGR03168 274 AVAAGSAAAFSPGTG--LPDPEDVEELLDQ 301 (303)
T ss_pred HHHHHHHHhcCCCcC--CCCHHHHHHHHhh
Confidence 999999999999994 6999999998754
No 38
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=2.7e-34 Score=298.40 Aligned_cols=294 Identities=16% Similarity=0.141 Sum_probs=225.1
Q ss_pred EEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHH
Q 008161 208 CCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYM 287 (575)
Q Consensus 208 lviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L 287 (575)
.+.=+..+|+++.. ++++. +....+......+||+++|+|++|++||.++.+++.+|+ .+|+++++.|
T Consensus 6 ~~~~~p~~d~~~~~---~~~~~--------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l 73 (309)
T PRK10294 6 TLTLAPSLDSATIT---PQIYP--------EGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLL 73 (309)
T ss_pred EEecChHHeEEEEe---Cceee--------CCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHH
Confidence 34457889999876 34442 122245677788999999999999999999999999996 7999999999
Q ss_pred HhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch-----hhhccCcEEEEecccccccchHHH
Q 008161 288 NVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI-----DVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 288 ~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~-----~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
++.||++.++...+. .++.+++.++.+|++.++ ...++ .++.++++. ..+..++++|++|+.. ...+.+.
T Consensus 74 ~~~gv~~~~~~~~~~-~~~~~~i~~~~~g~~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~i~g~~~-~~~~~~~ 148 (309)
T PRK10294 74 ADENVPVATVEAKDW-TRQNLHVHVEASGEQYRF-VMPGA--ALNEDEFRQLEEQVLEIESGAILVISGSLP-PGVKLEK 148 (309)
T ss_pred HHcCCCceEEECCCC-CeeeEEEEEcCCCcEEEE-ECCCC--CCCHHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCCHHH
Confidence 999999999877554 444455667777886554 44443 255544432 2367799999998643 2245678
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcH
Q 008161 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+.++++.+++.|++|+||++... ....+ .++++|++++|.+|+..|+|.......+ ..
T Consensus 149 ~~~~~~~a~~~g~~v~~D~~~~~--------~~~~~--~~~~~~~i~~n~~E~~~l~g~~~~~~~~------------~~ 206 (309)
T PRK10294 149 LTQLISAAQKQGIRCIIDSSGDA--------LSAAL--AIGNIELVKPNQKELSALVNRDLTQPDD------------VR 206 (309)
T ss_pred HHHHHHHHHHcCCeEEEeCCCHH--------HHHHH--hcCCCeEECCCHHHHHHHhCCCCCCHHH------------HH
Confidence 88999999999999999986210 11111 2468999999999999999875432111 12
Q ss_pred HHHHHHHhcC-CcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008161 443 EVIAPLWHEN-LKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 443 e~~~~L~~~g-~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
++++.++..+ ++.||||+|.+|++++.+++..+++. ++++ ++|||||||+|+|||+++|++| +++.+
T Consensus 207 ~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaf~ag~l~~l~~g-------~~~~~ 274 (309)
T PRK10294 207 KAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQVVP---PPVK--SQSTVGAGDSMVGAMTLKLAEN-------ASLEE 274 (309)
T ss_pred HHHHHHHHcCCCCEEEEecCCCceEEEcCCccEEEeC---CCcc--cCCCcchHHHHHHHHHHHHHcC-------CCHHH
Confidence 5567777766 89999999999999998776555554 3444 7999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 522 TIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
|+++|+++|+++|++.|+. .+..++++++++
T Consensus 275 al~~a~a~aa~~v~~~G~~--~~~~~~~~~~~~ 305 (309)
T PRK10294 275 MVRFGVAAGSAATLNQGTR--LCSHDDTQKIYA 305 (309)
T ss_pred HHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHH
Confidence 9999999999999999996 468888888875
No 39
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=3.4e-34 Score=297.64 Aligned_cols=291 Identities=15% Similarity=0.111 Sum_probs=219.1
Q ss_pred ccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhC
Q 008161 211 GSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVN 290 (575)
Q Consensus 211 G~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~ 290 (575)
=++.+|+.... ++++.. . ......+...+||+++|+|++|++||.++.++|.+|+| +|+++++.|++.
T Consensus 6 ~~p~~d~~~~~---~~~~~~-------~-~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~~ 73 (309)
T TIGR01231 6 LNPSVDISYPL---TALKLD-------T-VNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDHS 73 (309)
T ss_pred cchHHeEEEEc---CCeeeC-------c-eEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHHc
Confidence 35677887654 344432 1 22346688999999999999999999999999999974 999999999999
Q ss_pred CCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCcc----ccc--hhhhccCcEEEEecccccccchHHHHH
Q 008161 291 NVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKS----EIN--IDVLKEAKMFYFSTHSMLERNMKSTTL 364 (575)
Q Consensus 291 GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e----~i~--~~~l~~ad~v~~sg~~l~~~~~~e~~~ 364 (575)
||++.++...+ .|+.+++++. +|++++. ..+++. +..+ .+. ...++++++||++|+.. .......+.
T Consensus 74 GV~~~~~~~~~--~t~~~~~~~~-~g~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~ 146 (309)
T TIGR01231 74 DIKHAFYKISG--ETRNCIAILH-EGQQTEI-LEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAISGSLP-KGLPQDYYA 146 (309)
T ss_pred CCceeEEECCC--CCEEeEEEEe-CCCEEEE-eCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEECCCC-CCcCHHHHH
Confidence 99999887543 4666666664 6887764 444442 2211 111 24578899999998642 223457788
Q ss_pred HHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHH
Q 008161 365 QAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 365 ~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
++++.++++|++|+||++... ...+...+.++|+|++|.+|+..++|.......+ . ..+.
T Consensus 147 ~~~~~a~~~g~~v~~D~~~~~---------~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~---~--------~~~~ 206 (309)
T TIGR01231 147 QIIERCQNKGVPVVLDCSGAT---------LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLE---S--------LKQA 206 (309)
T ss_pred HHHHHHHhCCCeEEEECChHH---------HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHH---H--------HHHH
Confidence 999999999999999987421 1123345678999999999999999864321100 0 1244
Q ss_pred HHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHH
Q 008161 445 IAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIK 524 (575)
Q Consensus 445 ~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~ 524 (575)
++.++..|++.||||+|++|++++.+++..+++. ++++ +||||||||+|+|||+++|++| +++++|++
T Consensus 207 ~~~~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~agfl~~l~~g-------~~~~~a~~ 274 (309)
T TIGR01231 207 LSQPLFSGIEWIIVSLGAQGAFAKHGHTFYKVNI---PTIS--VVNPVGSGDSTVAGITSALLNH-------ESDHDLLK 274 (309)
T ss_pred HHHHHHcCCCEEEEccCCCceEEEeCCeeEEeeC---CccC--cCCCcchHHHHHHHHHHHHHcC-------CCHHHHHH
Confidence 5556667999999999999999998764444443 3454 7999999999999999999999 99999999
Q ss_pred HHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 525 YAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 525 ~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
+|+++|++++++.+. +..+++++++++.
T Consensus 275 ~a~a~aa~~~~~~~~--~~~~~~~~~~~~~ 302 (309)
T TIGR01231 275 KANTLGMLNAQEAQT--GHVNLNNYDDLFN 302 (309)
T ss_pred HHHHHHHHHhcCccc--CCCCHHHHHHHHh
Confidence 999999999998888 5678889888873
No 40
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=6.7e-34 Score=312.45 Aligned_cols=300 Identities=15% Similarity=0.136 Sum_probs=224.6
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
.++|+|||++++|++..+. .++++++... . ..........+|| ++|+|++|++||.++.++|.||+|.+|+++
T Consensus 10 ~~~ilviG~~~lD~~~~~~-~~~~~~~~~~----~-~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i 82 (473)
T PRK11316 10 RAGVLVVGDVMLDRYWYGP-TSRISPEAPV----P-VVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARAL 82 (473)
T ss_pred CCcEEEECccEEeeeeecc-cceeCCCCCC----C-EEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHH
Confidence 4579999999999998642 1233221100 0 1123567788999 699999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc---hhhhccCcEEEEecccccccchH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN---IDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~---~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
++.|++.||+++++.+ .+.+|++++++++.++.. +..........++.+.+. ...+.+++++|++++.. ...
T Consensus 83 ~~~L~~~gI~~~~v~~-~~~~T~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~---~~~ 157 (473)
T PRK11316 83 SKLLAAVGVKCDFVSV-PTHPTITKLRVLSRNQQL-IRLDFEEGFEGVDPQPLLERIEQALPSIGALVLSDYAK---GAL 157 (473)
T ss_pred HHHHHHcCCceeEEEc-CCCCCCeeEEEEeCCceE-EecccccCCCchhHHHHHHHHHHHhccCCEEEEecCCc---cch
Confidence 9999999999998866 567898888888654432 211111122223333321 34578999999987542 123
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
..+..+++.++++|++|+|||+... + ..+..+|++++|..|++.++|...... +
T Consensus 158 ~~~~~~~~~~k~~g~~vv~Dp~~~~-~------------~~~~~~dil~pN~~Ea~~l~g~~~~~~-~------------ 211 (473)
T PRK11316 158 ASVQAMIQLARKAGVPVLIDPKGTD-F------------ERYRGATLLTPNLSEFEAVVGKCKDEA-E------------ 211 (473)
T ss_pred hHHHHHHHHHHhcCCeEEEeCCCCC-c------------cccCCCeEECcCHHHHHHHhCCCCCHH-H------------
Confidence 5677889999999999999987431 1 235689999999999999998522110 0
Q ss_pred cHHHHHHHH-hcCCcEEEEecCCcceEEEecCCC-eeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchh
Q 008161 441 EPEVIAPLW-HENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 441 ~~e~~~~L~-~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.+++++ ..|++.|+||+|.+|++++.+++. .++++ ++++ ++||+||||+|+|||+++|++| ++
T Consensus 212 ~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~aa~~~~l~~g-------~~ 279 (473)
T PRK11316 212 LVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAPLHLPT---QARE--VYDVTGAGDTVISVLAAALAAG-------NS 279 (473)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCceEEecC---cCCC--CCCCCCCcHHHHHHHHHHHHcC-------CC
Confidence 123455555 468999999999999998887653 34443 3444 7999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++|+++|+++|++++++.|+. .++.++++++|..
T Consensus 280 ~~~al~~A~a~Aa~~v~~~G~~--~~~~~~l~~~l~~ 314 (473)
T PRK11316 280 LEEACALANAAAGVVVGKLGTS--TVSPIELENALRG 314 (473)
T ss_pred HHHHHHHHHHHHHhhcccCCCc--cCCHHHHHHHHhc
Confidence 9999999999999999999985 3799999999874
No 41
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=8.3e-34 Score=291.60 Aligned_cols=279 Identities=16% Similarity=0.160 Sum_probs=215.5
Q ss_pred EEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHH
Q 008161 207 VCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYY 286 (575)
Q Consensus 207 VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~ 286 (575)
..++|++++|++... +++|. +...........+||+++|+|.+|++||.+|.++|.||+| +|+.+++.
T Consensus 3 ~~~~~~~~~D~~~~~---~~~~~--------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~ 70 (289)
T cd01164 3 YTVTLNPAIDLTIEL---DQLQP--------GEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEAL 70 (289)
T ss_pred EEEecChHHeEEEEc---CcccC--------CceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHH
Confidence 468899999999887 34442 2233456778999999999999999999999999999998 89999999
Q ss_pred HHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecccccccchH
Q 008161 287 MNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 287 L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~------~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
|++.||++.++... ..|+.++++++.+|++.. +...++ .++.++++. +.+++++++|+++.... ....
T Consensus 71 l~~~gi~~~~~~~~--~~t~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~ 144 (289)
T cd01164 71 LKEEGIPDDFVEVA--GETRINVKIKEEDGTETE-INEPGP--EISEEELEALLEKLKALLKKGDIVVLSGSLPP-GVPA 144 (289)
T ss_pred HHHcCCCceEEECC--CCCEEEEEEEeCCCCEEE-EeCCCC--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-CcCH
Confidence 99999999988764 357777777776666544 333332 354444321 34578999999975321 1234
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhc-ccCeEEeCCHHHHHHhhCCCCCccccccccccccccC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW-TLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll-~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
..+..+++.+++.+++|+||++... +.+++ +++|++++|++|+..+++.......+
T Consensus 145 ~~~~~~~~~~~~~~~~i~~D~~~~~------------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~----------- 201 (289)
T cd01164 145 DFYAELVRLAREKGARVILDTSGEA------------LLAALAAKPFLIKPNREELEELFGRPLGDEED----------- 201 (289)
T ss_pred HHHHHHHHHHHHcCCeEEEECChHH------------HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHH-----------
Confidence 6778888889999999999986321 12233 79999999999999999865332111
Q ss_pred CcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhH
Q 008161 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 440 ~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
..+.+..+++.+++.||||+|++|++++.+++.++++. ++++ ++|||||||+|+|||+++|++| +++
T Consensus 202 -~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~---~~~~--vvDttGAGDaf~a~~i~~l~~g-------~~~ 268 (289)
T cd01164 202 -VIAAARKLIERGAENVLVSLGADGALLVTKDGVYRASP---PKVK--VVSTVGAGDSMVAGFVAGLAQG-------LSL 268 (289)
T ss_pred -HHHHHHHHHHcCCCEEEEecCCCCCEEEcCCcEEEecC---CCcc--ccCCCChHHHHHHHHHHHHHcC-------CCH
Confidence 13556778888999999999999999998765444433 3444 7999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHcccccc
Q 008161 520 VRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~~G~ 539 (575)
++|+++|+++|+++|++.|+
T Consensus 269 ~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 269 EEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred HHHHHHHHHHHHHHhcCccC
Confidence 99999999999999999986
No 42
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.4e-32 Score=284.67 Aligned_cols=271 Identities=15% Similarity=0.101 Sum_probs=212.5
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
..++|+|||++++|++.... ......+||+++|+|.+|++||.++.|+|+||+|..
T Consensus 10 ~~~~vlvvG~~~~D~i~~~g---------------------~~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~--- 65 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQNG---------------------SVTAESLGGAASFISNVLDALSVECELVSKVGPDFL--- 65 (335)
T ss_pred CCCCEEEEeeeeeeEEEeCC---------------------cEEEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc---
Confidence 34689999999999997531 124578999999999999999999999999999942
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcC-----CCCeEEEEecCCccccCCccccchhhhccCcEEEEeccccccc
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGK-----RGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLER 357 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~-----~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~ 357 (575)
.+|+...+.+ ++.+|+.++++++. +|+++++ ..++++..+++++++...+..++++++.+.
T Consensus 66 -------~~v~~~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~-~~~ga~~~l~~~di~~~~~~~~~~~~l~~e----- 131 (335)
T PLN02630 66 -------YQVSHPPIVI-PDSKTTEFHADFDQGIDGNGHEDRVL-KRVCACDPIEPSDIPDMRYEFGMAVGVAGE----- 131 (335)
T ss_pred -------ccccccceec-CCCCceEEEEEEcCCcccCCCCeEEE-EeccccCCCChHHCCHHHhcccceeeecCC-----
Confidence 3777655544 66789999888876 4577764 778999999999887546777888888643
Q ss_pred chHHHHHHHHHHHhh-----cCCEEEEcCCCC-CccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccc
Q 008161 358 NMKSTTLQAIKISKQ-----FGGIIFYDVNLP-LPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKN 431 (575)
Q Consensus 358 ~~~e~~~~ll~~ak~-----~G~~Vv~D~~~~-~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~ 431 (575)
...+....+++.++. +|+.++||++.. ..+|... ...+..+++++|++++|++|+..+ .
T Consensus 132 i~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l---~--------- 196 (335)
T PLN02630 132 ILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI---D--------- 196 (335)
T ss_pred CcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc---C---------
Confidence 235678888888887 789999999853 4455211 123567899999999999999876 1
Q ss_pred cccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCC
Q 008161 432 NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPH 511 (575)
Q Consensus 432 ~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~ 511 (575)
.+.+. + ...||||+|++|++++.+++.+++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 197 ----------~~~~~---~--~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vDttGAGDaF~agfi~~l~~g-- 254 (335)
T PLN02630 197 ----------VEEVR---Q--KCCVIVTNGKKGCRIYWKDGEMRVPP---FPAI--QVDPTGAGDSFLGGFVAGLVQG-- 254 (335)
T ss_pred ----------HHHHc---c--CCEEEEEECCCceEEEECCeeEEeCC---CCCC--CCCCCChHHHHHHHHHHHHHcC--
Confidence 01111 1 23899999999999998776545544 3454 7999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 512 LITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 512 ~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
.++++|+++|+++|++++++.|. .-.+.+++++++.+
T Consensus 255 -----~~~~~a~~~A~a~aa~~v~~~G~--~~~~~~~l~~~~~~ 291 (335)
T PLN02630 255 -----LAVPDAALLGNYFGSLAVEQVGI--PKFDLRQLQRVKDE 291 (335)
T ss_pred -----CCHHHHHHHHHHHHHHHhCcCCC--CCCCHHHHHHHhhc
Confidence 99999999999999999999996 34588898888654
No 43
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.9e-32 Score=273.90 Aligned_cols=254 Identities=17% Similarity=0.174 Sum_probs=190.9
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+++|++++|++... ......+||+++|+|++|++||.++.++|.||+|.+|+ ++
T Consensus 1 ~il~iG~~~iD~~~~~----------------------~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~ 56 (254)
T cd01937 1 KIVIIGHVTIDEIVTN----------------------GSGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WS 56 (254)
T ss_pred CeEEEcceeEEEEecC----------------------CceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HH
Confidence 5899999999999642 24567899999999999999999999999999999998 68
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++..+ .. ..|+.+++.++.+|++++.+. .+....+... ...+.+++++|+++++ .+....
T Consensus 57 ~l~~~gv~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~ 123 (254)
T cd01937 57 DLFDNGIEVISL--LS-TETTTFELNYTNEGRTRTLLA-KCAAIPDTES---PLSTITAEIVILGPVP------EEISPS 123 (254)
T ss_pred HHHHCCcEEEEe--cC-CCeEEEEEEecCCCCeeeeec-cccCCccccc---ccccCcccEEEECCCc------chhcHH
Confidence 899999996433 33 356666666777778766533 4443322221 2346789999998642 122233
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+.+.+ .+|++|++.....|. .....+.++++++|++++|++|+..+. + ..+.+
T Consensus 124 ~~~~~----~~v~~D~~~~~~~~~---~~~~~~~~~l~~~di~~~n~~E~~~~~-----~---------------~~~~~ 176 (254)
T cd01937 124 LFRKF----AFISLDAQGFLRRAN---QEKLIKCVILKLHDVLKLSRVEAEVIS-----T---------------PTELA 176 (254)
T ss_pred HHhhh----hheeEccccceeecc---ccchHHHhhcccCcEEEEcHHHHhhcC-----C---------------HHHHH
Confidence 33322 689999974322232 112236789999999999999998831 0 13566
Q ss_pred HHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHH
Q 008161 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKY 525 (575)
Q Consensus 446 ~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~ 525 (575)
+.+...|++.||||+|.+|+++++++...++++ +++. ++|||||||+|+|||+++|++| +++++|+++
T Consensus 177 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~---~~~~--~vdt~GAGD~f~a~~~~~l~~g-------~~~~~a~~~ 244 (254)
T cd01937 177 RLIKETGVKEIIVTDGEEGGYIFDGNGKYTIPA---SKKD--VVDPTGAGDVFLAAFLYSRLSG-------KDIKEAAEF 244 (254)
T ss_pred HHHHHcCCCEEEEeeCCcceEEEECCccEEccc---cCce--eccCCCchHHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 677778999999999999999998876545443 3343 7999999999999999999999 999999999
Q ss_pred HHHHHHHHcc
Q 008161 526 AIDCGVRDQW 535 (575)
Q Consensus 526 A~aaAA~~v~ 535 (575)
|+++|+++|.
T Consensus 245 a~~~aa~~i~ 254 (254)
T cd01937 245 AAAAAAKFIE 254 (254)
T ss_pred HHHHHHHHhC
Confidence 9999999863
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.9e-32 Score=277.70 Aligned_cols=273 Identities=14% Similarity=0.163 Sum_probs=200.3
Q ss_pred EEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHH
Q 008161 207 VCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYY 286 (575)
Q Consensus 207 VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~ 286 (575)
|+|+|++++|++.... ..+...+||++.|+|.+|++|| .+.++|.||+| +|+.+++.
T Consensus 2 v~~~G~~~~D~~~~~~---------------------~~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~ 58 (277)
T cd01946 2 LLVVGSVAFDAIETPF---------------------GKVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKL 58 (277)
T ss_pred eEEEEEeeeeeecCCC---------------------ceeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHH
Confidence 8999999999994220 1245678999999999999998 69999999999 89999999
Q ss_pred HHhCCCccceEEEcCCCCCeEEEEEEc--CCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHH
Q 008161 287 MNVNNVQTRSVRIDAKRPTAVSQMKIG--KRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTL 364 (575)
Q Consensus 287 L~~~GVdt~~v~~~~~~~T~~~~i~vd--~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~ 364 (575)
|++.||+++++.+.++..|........ .++.+.+. ........+.+ .+ ...+.+++++|+++. ..+...
T Consensus 59 l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~------~~~~~~ 129 (277)
T cd01946 59 LNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLD-TDLNVFADFDP-QL-PEHYKDSEFVFLGNI------APELQR 129 (277)
T ss_pred HHhccCcceeEEEecCCCeEEEeeEehhhcccccchh-hhhhHHhhcCC-CC-hHHhhcCCEEEECCC------CHHHHH
Confidence 999999999998876656632111110 01221111 11111112222 12 245788999999864 235567
Q ss_pred HHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHH
Q 008161 365 QAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 365 ~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
.+++.+++. .+|+||+. .+|. ....+.+.++++++|++++|.+|+..|+|... ..+.
T Consensus 130 ~~~~~~~~~-~~v~~D~~---~~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~-----------------~~~~ 186 (277)
T cd01946 130 EVLEQVKDP-KLVVMDTM---NFWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGAAN-----------------LVKA 186 (277)
T ss_pred HHHHHHHhC-CEEEEccH---HHhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCCch-----------------HHHH
Confidence 778888776 88999973 3563 12345677899999999999999999987531 1356
Q ss_pred HHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHH
Q 008161 445 IAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIK 524 (575)
Q Consensus 445 ~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~ 524 (575)
++.+...|++.||||+|.+|++++.+++..++++ +++. .++|||||||+|+|||+++|+++... ...++++|++
T Consensus 187 ~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~-~~vDttGAGDaF~Agfl~~l~~~~~~--~~~~~~~a~~ 260 (277)
T cd01946 187 ARLILAMGPKALIIKRGEYGALLFTDDGYFAAPA---YPLE-SVFDPTGAGDTFAGGFIGYLASQKDT--SEANMRRAII 260 (277)
T ss_pred HHHHHHcCCCEEEEecCCCcEEEEECCceEEcCC---cccC-ccCCCCCchHHHHHHHHHHHHhCCCc--chhhHHHHHH
Confidence 6778788999999999999999998765444443 2332 26899999999999999999987221 1146999999
Q ss_pred HHHHHHHHHccccccC
Q 008161 525 YAIDCGVRDQWSQART 540 (575)
Q Consensus 525 ~A~aaAA~~v~~~G~~ 540 (575)
+|+++|+++|++.|+.
T Consensus 261 ~a~~~aa~~~~~~G~~ 276 (277)
T cd01946 261 YGSAMASFCVEDFGTK 276 (277)
T ss_pred HhHHHHhhhhhhcCCC
Confidence 9999999999999974
No 45
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.1e-31 Score=266.64 Aligned_cols=270 Identities=19% Similarity=0.215 Sum_probs=219.9
Q ss_pred cCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcC-CCCeE
Q 008161 241 WAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGK-RGRLR 319 (575)
Q Consensus 241 ~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~-~Ger~ 319 (575)
.+.......+||+|.|||..|+.||.++..+|.+|.+ .|++|.+.|+..||...++.+.. .|..++-+.+. +|..
T Consensus 26 Nr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~g--~TRinvki~~~~~~~~- 101 (310)
T COG1105 26 NRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFVEVKG--DTRINVKILDEEDGEE- 101 (310)
T ss_pred eeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHhcCCCceEEEccC--CCeeeEEEEecCCCcE-
Confidence 3456778899999999999999999999999999997 89999999999999999987754 68888877776 3333
Q ss_pred EEEecCCccccCCccccc------hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhH
Q 008161 320 MTCVKPCAEDALTKSEIN------IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEE 393 (575)
Q Consensus 320 ~~~~~~ga~~~lt~e~i~------~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~ 393 (575)
..+..+|+ .++.+++. ...+...|+|+++|... .....+.+.++++.+++.|++|++|.+.
T Consensus 102 Tein~~Gp--~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP-~g~~~d~y~~li~~~~~~g~~vilD~Sg---------- 168 (310)
T COG1105 102 TEINFPGP--EISEAELEQFLEQLKALLESDDIVVLSGSLP-PGVPPDAYAELIRILRQQGAKVILDTSG---------- 168 (310)
T ss_pred EEecCCCC--CCCHHHHHHHHHHHHHhcccCCEEEEeCCCC-CCCCHHHHHHHHHHHHhcCCeEEEECCh----------
Confidence 33344444 56666554 12467889999998532 2356889999999999999999999752
Q ss_pred HHHHHHHhc-ccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCC
Q 008161 394 TKMFIQQAW-TLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKED 472 (575)
Q Consensus 394 ~~~~l~~ll-~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~ 472 (575)
+.+...+ ..+.+|+||.+|++.++|.......| ..+.++.++..|++.|||++|++|+++.+++.
T Consensus 169 --~~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d------------~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~ 234 (310)
T COG1105 169 --EALLAALEAKPWLIKPNREELEALFGRELTTLED------------VIKAARELLAEGIENVIVSLGADGALLVTAEG 234 (310)
T ss_pred --HHHHHHHccCCcEEecCHHHHHHHhCCCCCChHH------------HHHHHHHHHHCCCCEEEEEecCcccEEEccCC
Confidence 2232333 34899999999999999988665433 23667778889999999999999999999986
Q ss_pred CeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhh
Q 008161 473 DGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEE 552 (575)
Q Consensus 473 ~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~ 552 (575)
.+++.. ++++ +++|+||||+++|||+++++++ +++++++++|++||+.++++.|. +.|+.++++++
T Consensus 235 ~~~a~~---p~~~--vvstVGAGDs~VAGf~~~~~~~-------~~~e~~l~~avA~g~a~~~~~~~--~~~~~~~~~~~ 300 (310)
T COG1105 235 VYFASP---PKVQ--VVSTVGAGDSMVAGFLAGLLKG-------KSLEEALRFAVACGAAAASQKGT--GIPDLDQLKKI 300 (310)
T ss_pred eEEEeC---CCcc--eecCcCchHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHH
Confidence 555442 3455 8999999999999999999999 99999999999999999999998 67999999888
Q ss_pred hCC
Q 008161 553 VEP 555 (575)
Q Consensus 553 l~~ 555 (575)
+.+
T Consensus 301 ~~~ 303 (310)
T COG1105 301 YAQ 303 (310)
T ss_pred hhh
Confidence 754
No 46
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=2.5e-31 Score=267.55 Aligned_cols=312 Identities=15% Similarity=0.183 Sum_probs=238.2
Q ss_pred EEEEccceeeeeccCC----------CCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCC---CeEEEEE
Q 008161 207 VCCFGSAQHAFVPSGR----------PANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGG---KVAFMGK 273 (575)
Q Consensus 207 VlviG~~~iD~i~~~~----------~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~---~v~lvg~ 273 (575)
.+.+|++++|+...+. ..+++.-++.|..+.+...........+||++.|++++|++++. .+.|+|.
T Consensus 9 l~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~Gs 88 (343)
T KOG2854|consen 9 LVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFGS 88 (343)
T ss_pred eeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEee
Confidence 4568999999997763 11222223446666666656678899999999999999999987 8999999
Q ss_pred eCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc----hhhhccCcEEEE
Q 008161 274 LGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN----IDVLKEAKMFYF 349 (575)
Q Consensus 274 VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~----~~~l~~ad~v~~ 349 (575)
||.|.+|+++++.++..||++.+. +..+.+|++|.++++.++ |++ +.+.++...++.++++ |..+.++.++|+
T Consensus 89 vG~Dk~ge~l~~~~~~aGv~~~yq-~~~d~~TGtCavli~~~n-RSL-~anLgAAn~f~~dhl~~~~~~~lveka~v~yv 165 (343)
T KOG2854|consen 89 VGKDKFGELLKSKARAAGVNVHYQ-VKEDGPTGTCAVLITGDN-RSL-CANLGAANCFKVDHLDKEENWALVEKAKVFYV 165 (343)
T ss_pred ccCchHHHHHHHHHHhcCceEEEE-eccCCCCceEEEEEeCCC-cch-hhccchhhccCHHHhcchhhhhhhhheeEEEE
Confidence 999999999999999999998775 557789999999998765 665 5778888889888884 457899999999
Q ss_pred ecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccc
Q 008161 350 STHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDT 429 (575)
Q Consensus 350 sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~ 429 (575)
.|+.+ ...+++++.+.+.+.+.+.+.+++++ .++. ...+++.+..+++|+|||+.|++|++.++........+.
T Consensus 166 ~Gffl--tv~p~ai~~v~qh~~e~~r~~~lnls--apfI--~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv 239 (343)
T KOG2854|consen 166 AGFFL--TVSPDAIRKVAQHAAENNRVFTLNLS--APFI--SQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDV 239 (343)
T ss_pred EEEEE--EeChHHHHHHHHHHHHhcchhheecc--chhH--HHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccch
Confidence 99865 24578888888888888776666654 3332 345678888999999999999999999985542221111
Q ss_pred cccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCC-cccCccCchHHHHHHHHHHHHc
Q 008161 430 KNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTP-FTSDMSASGDGIVAGIMRMLTV 508 (575)
Q Consensus 430 ~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~-~vVDTtGAGDaF~AGfl~~L~~ 508 (575)
.+... ....+.+......++++||.|..++++...+....++. .+++. .++||+||||+|++||+++|.+
T Consensus 240 ~eia~------~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v---~~~~~~~ivDtnGAGDaFvgGFl~~l~q 310 (343)
T KOG2854|consen 240 KEIAL------KLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPV---LPLPVEEIVDTNGAGDAFVGGFLSQLVQ 310 (343)
T ss_pred HHHhh------HhhccccccccccceEEEccCCCceEEecCCceEEecc---ccccceeeeeCCCchHHHHHHHHHHHHc
Confidence 11000 00011111113468999999999999998864443332 23222 3899999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCC
Q 008161 509 QPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 509 g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt 545 (575)
| .++++|++.|+.+|+.++...|+ .+|+
T Consensus 311 g-------~~l~~cir~g~~aa~~vi~~~G~--~~p~ 338 (343)
T KOG2854|consen 311 G-------KSLEECIRAGSYAASHVIRRVGC--TVPE 338 (343)
T ss_pred C-------CCHHHHHHHHHHHhhheeeccCC--CCCC
Confidence 9 99999999999999999999998 4565
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3.5e-27 Score=242.03 Aligned_cols=305 Identities=18% Similarity=0.172 Sum_probs=228.2
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
.+.+|+|+|++|+|.|+.+. .+|+.++. -.++ .........+|| |+|||.+++.||.++.++|.+|.|..|+.
T Consensus 9 ~~~kVLVvGDvmLDrY~~G~-~~RISPEA-PVPV----v~v~~e~~rlGG-AaNVa~NiasLGa~a~l~GvvG~Deag~~ 81 (467)
T COG2870 9 KQAKVLVVGDVMLDRYWYGK-VSRISPEA-PVPV----VKVEKEEERLGG-AANVAKNIASLGANAYLVGVVGKDEAGKA 81 (467)
T ss_pred cCCcEEEEcceeeeeecccc-ccccCCCC-CCce----EEeccccccccc-HHHHHHHHHHcCCCEEEEEeeccchhHHH
Confidence 45689999999999999874 34554421 1111 234667788988 59999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc---hhhhccCcEEEEeccc--cccc
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN---IDVLKEAKMFYFSTHS--MLER 357 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~---~~~l~~ad~v~~sg~~--l~~~ 357 (575)
|...|...+|+..++ .+++.+|.+-.-++..+.+. +.+.............|- ...+++.++++++-|. .+.
T Consensus 82 L~~~l~~~~i~~~l~-~~~~r~T~~K~Rv~s~nQQl-lRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~- 158 (467)
T COG2870 82 LIELLKANGIDSDLL-RDKNRPTIVKLRVLSRNQQL-LRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLT- 158 (467)
T ss_pred HHHHHHhcCcccceE-eecCCCceeeeeeecccceE-EEecccccCcchhHHHHHHHHHHHhhcCCEEEEeccccccch-
Confidence 999999999996554 56778888877777554432 211111111001111111 3567889999999874 222
Q ss_pred chHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccc
Q 008161 358 NMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 358 ~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+..+++.|+++|++|.+||-... + ..+..+.+|+||..|++...|....+. +
T Consensus 159 ----~~q~~I~~ar~~~~pVLvDPKg~D------------f-~~Y~GAtLiTPN~~E~~~~vg~~~~e~-e--------- 211 (467)
T COG2870 159 ----NVQKMIDLAREAGIPVLVDPKGKD------------F-EKYRGATLITPNLKEFEEAVGKCKSEE-E--------- 211 (467)
T ss_pred ----hHHHHHHHHHHcCCcEEECCCCcc------------h-hhhCCCeecCCCHHHHHHHHcccccHH-H---------
Confidence 267889999999999999986332 1 346789999999999999999865431 1
Q ss_pred cCCcHHHHHHHHh-cCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCc
Q 008161 438 VHYEPEVIAPLWH-ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDK 516 (575)
Q Consensus 438 ~~~~~e~~~~L~~-~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~ 516 (575)
..+..++|.+ .+...++||++++|..++..++..++|+. .. +|.|.|||||+-+|.|..+|+.|
T Consensus 212 ---l~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~---Ak--EVyDVTGAGDTVIa~la~~laaG------- 276 (467)
T COG2870 212 ---LEERGQKLKEELDLSALLVTRSEKGMTLFQEGKPLHFPAR---AK--EVYDVTGAGDTVIAVLAAALAAG------- 276 (467)
T ss_pred ---HHHHHHHHHHhhCcceEEEEeccCCceeecCCcccccchh---he--eeeeccCCCchHHHHHHHHHHcC-------
Confidence 1244566665 47899999999999999998876666652 22 38999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCCCCcc
Q 008161 517 GYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDPYGIR 561 (575)
Q Consensus 517 ~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~~~~~ 561 (575)
.++++|+.+||+||++.+...|+. ..+.+|+...+....+.-.
T Consensus 277 ~s~~eAc~lAN~AagiVVgKlGTa--tvs~~EL~nAV~pni~~~~ 319 (467)
T COG2870 277 ASLEEACELANAAAGIVVGKLGTA--TVSPEELEMAVAPNIESKL 319 (467)
T ss_pred CCHHHHHHHhhhhcceEEeeccce--eecHHHHHhhhccCccccc
Confidence 999999999999999999999994 4688998886555544433
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4e-25 Score=212.88 Aligned_cols=280 Identities=17% Similarity=0.163 Sum_probs=205.5
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
+|+.|+|+|.+.+|+|..+. ..|.+ +...+...-...-||.+.|++.+|..||.++.|+|.+...+.-++
T Consensus 3 ~~k~VLcVG~~~lD~iTivd---~~~fe-------~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~ 72 (308)
T KOG2947|consen 3 EPKQVLCVGCTVLDVITIVD---KYPFE-------DSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRF 72 (308)
T ss_pred CcceEEEeccEEEEEEEecc---CCCCC-------ccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHH
Confidence 45789999999999997663 22221 111122333456799999999999999999999999999889999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEc-CCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG-KRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd-~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
|++.|++.||+++++..... ..+++.|+++ ..|.|+++ .....+..++.+++..-.+.+..||||.+- ++.+
T Consensus 73 lLddl~~rgIdishcpftd~-~pp~ssiI~~r~s~trTil-~~dks~p~vT~~dF~kvdl~qy~WihfE~R-----np~e 145 (308)
T KOG2947|consen 73 LLDDLRRRGIDISHCPFTDH-SPPFSSIIINRNSGTRTIL-YCDKSLPDVTATDFEKVDLTQYGWIHFEAR-----NPSE 145 (308)
T ss_pred HHHHHHhcCCCcccCccccC-CCCcceEEEecCCCceEEE-EecCCCccccHHHhhhcccceeeeEEEecC-----ChHH
Confidence 99999999999999887655 4445555554 45777665 556666778888776556788999999863 1223
Q ss_pred HHHHHHHHHhh--------cCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccc
Q 008161 362 TTLQAIKISKQ--------FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNA 433 (575)
Q Consensus 362 ~~~~ll~~ak~--------~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~ 433 (575)
.++++....+ .++.|++|+..+ .+.+..++..+|+++++++=++.+ |....
T Consensus 146 -tlkM~~~I~~~N~r~pe~qrI~vSvd~en~----------req~~~l~am~DyVf~sK~~a~~~-gfks~--------- 204 (308)
T KOG2947|consen 146 -TLKMLQRIDAHNTRQPEEQRIRVSVDVENP----------REQLFQLFAMCDYVFVSKDVAKHL-GFKSP--------- 204 (308)
T ss_pred -HHHHHHHHHHhhcCCCccceEEEEEEecCc----------HHHHHHHhhcccEEEEEHHHHhhh-ccCCH---------
Confidence 2334444333 347788886422 455667889999999999988876 55432
Q ss_pred cccccCCcHHHHHHHHhc---C--CcEEEEecCCcceEEEecCCCe-eEecccCCCCCCcccCccCchHHHHHHHHHHH-
Q 008161 434 RSKFVHYEPEVIAPLWHE---N--LKVLFVTNGTSKVHYYTKEDDG-AVLGTEDAPLTPFTSDMSASGDGIVAGIMRML- 506 (575)
Q Consensus 434 ~~~~~~~~~e~~~~L~~~---g--~k~VVVT~G~~Ga~v~~~~~~~-~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L- 506 (575)
.+++..+..+ | -..+|+..+..|+-....++.+ ++++++ |. ++|||.||||+|+|||||++
T Consensus 205 --------rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~--pp--kvVD~lg~~DtF~A~vIyA~l 272 (308)
T KOG2947|consen 205 --------REACEGLYGRVPKGKPKPVLICPWASEGAGALGADGKYFEVDAFK--PP--KVVDTLGAGDTFNAGVIYALL 272 (308)
T ss_pred --------HHHHHHHHhhcccCCCCcEEEeccccccccccCCCCCEEecCCCC--Cc--cceeeccCCCcchHHHHHHHH
Confidence 2455554432 2 2467888999998888776543 555543 22 38999999999999999995
Q ss_pred HcCCCCCCCchhHHHHHHHHHHHHHHHcccccc
Q 008161 507 TVQPHLITDKGYLVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 507 ~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~ 539 (575)
.++ .+|.+|+.||+++|+.++...|-
T Consensus 273 k~~-------r~l~eAvdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 273 KQG-------RSLAEAVDFGNRVASKKLGGQGF 298 (308)
T ss_pred Hhh-------hhHHHHHHHHHHhhhcccccccc
Confidence 566 99999999999999999988875
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.94 E-value=4.2e-25 Score=212.98 Aligned_cols=195 Identities=24% Similarity=0.240 Sum_probs=152.0
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+|+++|++++|++... +++|. .+...........+||+|.|+|.+|++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~---~~~~~-------~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRV---DALPL-------PGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG------------- 57 (196)
T ss_pred CEEEEccceEEEEEEe---ccCCC-------CCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-------------
Confidence 4899999999999876 33442 122334577889999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
++++|+++.... .+.+.+
T Consensus 58 ----------------------------------------------------------~~~v~i~~~~~~----~~~~~~ 75 (196)
T cd00287 58 ----------------------------------------------------------ADAVVISGLSPA----PEAVLD 75 (196)
T ss_pred ----------------------------------------------------------ccEEEEecccCc----HHHHHH
Confidence 789999975321 367788
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.+++.|++++||++.....|.. ..+.++++++|++++|.+|++.|++.......+ ..+.+
T Consensus 76 ~~~~~~~~~~~v~~D~~~~~~~~~~-----~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~------------~~~~~ 138 (196)
T cd00287 76 ALEEARRRGVPVVLDPGPRAVRLDG-----EELEKLLPGVDILTPNEEEAEALTGRRDLEVKE------------AAEAA 138 (196)
T ss_pred HHHHHHHcCCeEEEeCCcccccccc-----chHHHHHhhCCEECCCHHHHHHHhCCCCCChHH------------HHHHH
Confidence 8999999999999999876655531 125678899999999999999999875432111 12567
Q ss_pred HHHHhcCCcEEEEecCCcceEEEe-cCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHH
Q 008161 446 APLWHENLKVLFVTNGTSKVHYYT-KEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 446 ~~L~~~g~k~VVVT~G~~Ga~v~~-~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~ 507 (575)
+.++..+++.||||+|++|++++. ++...+++. +++. ++||+||||+|+|||+++|+
T Consensus 139 ~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~---~~~~--~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 139 ALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPA---FPVK--VVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred HHHHhcCCCEEEEEECCCccEEEecCCceEEcCC---ccCC--cccCCCchHHHHHHHHHHhC
Confidence 778888999999999999999998 544333332 2333 89999999999999999974
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.72 E-value=1.6e-16 Score=160.70 Aligned_cols=169 Identities=18% Similarity=0.089 Sum_probs=126.3
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhc--CCEEEEcCCCCC--ccccChhHHHHHHHHhcc-cCeEEeCCHHHHH
Q 008161 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQF--GGIIFYDVNLPL--PLWQSGEETKMFIQQAWT-LADVIEVTKQELE 416 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~--G~~Vv~D~~~~~--~l~~~~~~~~~~l~~ll~-~aDII~~N~~Ea~ 416 (575)
..++++. .|+. .+....+.+.++++.++++ |++|+|||+... .+|...++..+.+.+++. ++|+|+||..|++
T Consensus 71 ~~~~~v~-~G~l-~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~ 148 (254)
T cd01173 71 LEYDAVL-TGYL-GSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELE 148 (254)
T ss_pred ccCCEEE-EecC-CCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHH
Confidence 4567774 4432 2345678889999999877 899999997532 455333455666767676 9999999999999
Q ss_pred HhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCc------ceEEEecCCCeeEecccCCCCCCcccC
Q 008161 417 FLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS------KVHYYTKEDDGAVLGTEDAPLTPFTSD 490 (575)
Q Consensus 417 ~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~------Ga~v~~~~~~~~v~a~~~~~v~~~vVD 490 (575)
.|+|.......+ ..+.++++.+.|++.|+||.|.. |++++.++....++. +.++. ++|
T Consensus 149 ~l~g~~~~~~~~------------~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~---~~~~~-~~~ 212 (254)
T cd01173 149 LLTGKKINDLED------------AKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQR---PKIPF-PAY 212 (254)
T ss_pred HHcCCCcCCHHH------------HHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEe---eccCC-CCC
Confidence 999976432211 23667788888999999999985 788877654333332 23332 489
Q ss_pred ccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 491 MSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 491 TtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
++||||+|+|||+++|++| +++++|+++|+++...++.
T Consensus 213 ~~GaGD~f~a~~~~~l~~g-------~~~~~a~~~A~~~~~~~i~ 250 (254)
T cd01173 213 FNGTGDLFAALLLARLLKG-------KSLAEALEKALNFVHEVLE 250 (254)
T ss_pred cCChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999998776553
No 51
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.70 E-value=6e-16 Score=156.48 Aligned_cols=226 Identities=15% Similarity=0.149 Sum_probs=143.3
Q ss_pred eEEEEEeCCChHH-HHHHHHHHh---CCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhcc
Q 008161 268 VAFMGKLGDDEYG-QAMLYYMNV---NNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKE 343 (575)
Q Consensus 268 v~lvg~VG~D~~G-~~i~~~L~~---~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ 343 (575)
..+++.-|.|..| .-+...++. +|+. +..+.+++...+..|. .+. . -....+ .+.+ +.+..
T Consensus 4 ~~vl~iag~d~~ggaG~~aD~~~~~~~~~~--------~~~~~t~~t~~~~~G~-~v~-~--~~~~~l-~~~l--~~l~~ 68 (253)
T PRK12413 4 NYILAISGNDIFSGGGLHADLATYTRNGLH--------GFVAVTCLTAMTEKGF-EVF-P--VDKEIF-QQQL--DSLKD 68 (253)
T ss_pred CeEEEEeeeCCCCHHHHHHHHHHHHHcCCc--------cCeeeEEEecccCCce-EEE-E--CCHHHH-HHHH--HHhhC
Confidence 3567777877654 336555553 3332 2344555666666664 221 1 111111 1111 22233
Q ss_pred CcEEEEe-cccccccchHHHHHHHHHHHh-hcCCEEEEcCCCCCcccc--ChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 344 AKMFYFS-THSMLERNMKSTTLQAIKISK-QFGGIIFYDVNLPLPLWQ--SGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 344 ad~v~~s-g~~l~~~~~~e~~~~ll~~ak-~~G~~Vv~D~~~~~~l~~--~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.++..+. |+ +. ..+....+++.++ ..+++|+|||+++...|. ..+...+.+..+++++|+|+||..|++.|+
T Consensus 69 ~~~~~i~~G~--l~--~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~ 144 (253)
T PRK12413 69 VPFSAIKIGL--LP--NVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLS 144 (253)
T ss_pred CCCCEEEECC--cC--CHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHh
Confidence 3333333 32 11 2234444455554 468899999999888873 234455566678999999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcc-----eEEEecCCCeeEecccCCCCCCcccCccCc
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-----VHYYTKEDDGAVLGTEDAPLTPFTSDMSAS 494 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G-----a~v~~~~~~~~v~a~~~~~v~~~vVDTtGA 494 (575)
|....+..+ ..+.++.+.+.|++.||||.|..| ..++..++..+++. .++. .+|++||
T Consensus 145 g~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~Ga 207 (253)
T PRK12413 145 GKEIKTLED------------MKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGKEFVILE---SPVL--EKNNIGA 207 (253)
T ss_pred CcCCCCHHH------------HHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCCEEEEEe---eccc--CCCCCCh
Confidence 975432211 135677788889999999999864 22333333333333 2333 6899999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 495 GDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 495 GDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
||+|+|||+++|++| +++++|+++|.++...++..
T Consensus 208 GDaf~a~~~~~l~~g-------~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 208 GCTFASSIASQLVKG-------KSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred HHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999988777664
No 52
>PRK05756 pyridoxamine kinase; Validated
Probab=99.70 E-value=4e-16 Score=160.77 Aligned_cols=170 Identities=17% Similarity=0.096 Sum_probs=124.8
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcC--CEEEEcCCCCC---ccccChhHHHHHHHHhcccCeEEeCCHHHH
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG--GIIFYDVNLPL---PLWQSGEETKMFIQQAWTLADVIEVTKQEL 415 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G--~~Vv~D~~~~~---~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea 415 (575)
+..++++ ++|+. .+....+.+.++++.++..+ +.+++||++.. .+|...+........+++++|+|+||..|+
T Consensus 72 l~~~~~v-~~G~l-~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAV-LSGYL-GSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEE-EECCC-CCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHH
Confidence 4467866 55542 23446778889998888765 56899998765 245333333344556899999999999999
Q ss_pred HHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCc--------ceEEEecCCCeeEecccCCCCCCc
Q 008161 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS--------KVHYYTKEDDGAVLGTEDAPLTPF 487 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~--------Ga~v~~~~~~~~v~a~~~~~v~~~ 487 (575)
+.|+|....+..+ ..+.+++++..|++.||||.|.. |++++++++...++. +.++
T Consensus 150 ~~L~g~~~~~~~~------------~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~-- 212 (286)
T PRK05756 150 EWLSGRPVETLED------------AVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISR---PLVD-- 212 (286)
T ss_pred HHHhCCCcCCHHH------------HHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEec---CccC--
Confidence 9999875432111 13567778888999999999876 477777654333322 3343
Q ss_pred c-cCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 488 T-SDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 488 v-VDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+ +|++||||+|+|||+++|++| .++++|+++|++....++..
T Consensus 213 ~~v~~~GaGD~f~a~~~a~l~~g-------~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 213 FMRQPVGVGDLTSALFLARLLQG-------GSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred CCCCCCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 5 699999999999999999999 99999999999998877764
No 53
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.67 E-value=1.3e-15 Score=156.93 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=116.8
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcC--CEEEEcCCCCCc---cccChhHHHHHH-HHhcccCeEEeCCHHH
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG--GIIFYDVNLPLP---LWQSGEETKMFI-QQAWTLADVIEVTKQE 414 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G--~~Vv~D~~~~~~---l~~~~~~~~~~l-~~ll~~aDII~~N~~E 414 (575)
+..+|++++ |+. .+....+.+.++++.+++.| +.+++||+.... +|... ...+.+ ..+++++|+|+||..|
T Consensus 72 ~~~~d~v~~-G~l-~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~-~~~~~~~~~ll~~adii~pN~~E 148 (286)
T TIGR00687 72 LNQCDAVLS-GYL-GSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAP-DLLEVYREKAIPVADIITPNQFE 148 (286)
T ss_pred cccCCEEEE-CCC-CCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeCh-hHHHHHHHhccccccEecCCHHH
Confidence 457898744 442 23345678888998888765 678999975432 23222 233333 4688999999999999
Q ss_pred HHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEe-cCCcce--------EEEecCCCeeEecccCCCCC
Q 008161 415 LEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVT-NGTSKV--------HYYTKEDDGAVLGTEDAPLT 485 (575)
Q Consensus 415 a~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT-~G~~Ga--------~v~~~~~~~~v~a~~~~~v~ 485 (575)
++.|+|.+..+..+ ..+.++.+++.|++.|||| .|..|+ +++++++...++. +.+.
T Consensus 149 a~~L~g~~~~~~~~------------~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~ 213 (286)
T TIGR00687 149 LELLTGRKINTVEE------------ALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISR---PLAV 213 (286)
T ss_pred HHHHhCCCcCCHHH------------HHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEec---cCcC
Confidence 99999975432111 1256677888899999999 788775 3444443323322 2232
Q ss_pred CcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHH
Q 008161 486 PFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGV 531 (575)
Q Consensus 486 ~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA 531 (575)
. ++|++||||+|+|||+++|++| .++++|+++|+++..
T Consensus 214 ~-~~d~~GaGD~f~A~~l~~l~~g-------~~~~~al~~A~~~v~ 251 (286)
T TIGR00687 214 F-MRQPVGTGDLIAALLLATLLHG-------NSLKEALEKTVSAVY 251 (286)
T ss_pred C-CCCCCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHH
Confidence 1 5899999999999999999999 999999999999933
No 54
>PRK07105 pyridoxamine kinase; Validated
Probab=99.67 E-value=1.5e-15 Score=156.45 Aligned_cols=175 Identities=16% Similarity=0.090 Sum_probs=124.6
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC--ccccC-hhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL--PLWQS-GEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~--~l~~~-~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.++.|+++.+. +....+.+.++++.+++.+++|+|||+... .+|.. .+...+.+.++++++|+|+||..|++.|+
T Consensus 75 ~~~aik~G~l~--~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 152 (284)
T PRK07105 75 KFDAIYSGYLG--SPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLL 152 (284)
T ss_pred ccCEEEECcCC--CHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHc
Confidence 57888876432 333456666777766777899999998643 24532 23455666789999999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEec-----CCcceEEEecCC-CeeEecccCCCCCCcccCccC
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTN-----GTSKVHYYTKED-DGAVLGTEDAPLTPFTSDMSA 493 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~-----G~~Ga~v~~~~~-~~~v~a~~~~~v~~~vVDTtG 493 (575)
|..........+. ..+.++.+...|++.||||. |..|+++++++. ..+... .+.+ .+|++|
T Consensus 153 g~~~~~~~~~~~~--------~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~--~~~~---~~~~~G 219 (284)
T PRK07105 153 DKPYLEKSYSEEE--------IKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVF--CKYI---PAHYPG 219 (284)
T ss_pred CCCcCcCCCCHHH--------HHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEe--eccc---CCCcCC
Confidence 8653210000000 13566777778999999999 777888887542 222222 1222 479999
Q ss_pred chHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcccccc
Q 008161 494 SGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 494 AGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~ 539 (575)
|||+|+|||+++|++| +++++|+++|++++...+..-..
T Consensus 220 aGD~f~aa~~~~l~~g-------~~l~~av~~A~~~~~~~i~~~~~ 258 (284)
T PRK07105 220 TGDIFTSVITGSLLQG-------DSLPIALDRAVQFIEKGIRATLG 258 (284)
T ss_pred hhHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999888775433
No 55
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.65 E-value=6.6e-15 Score=149.18 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=119.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCC-EEEEcCCCCC----ccccChhHHHHHHHHhcccCeEEeCCHHHHHH
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG-IIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~-~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~ 417 (575)
..+.+.++-. . ..+.+..+++.+++++. +|+|||.... +++. .+........+++++|+|+||..|++.
T Consensus 67 ~~~aikiG~l---~--~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~ 140 (254)
T TIGR00097 67 PVDAAKTGML---A--SAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLE-EEAIEALRKRLLPLATLITPNLPEAEA 140 (254)
T ss_pred CCCEEEECCc---C--CHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCC-HHHHHHHHHhccccccEecCCHHHHHH
Confidence 3577777632 1 35677788888888888 6999997543 2332 111223345688999999999999999
Q ss_pred hhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCC----cce-EEEecCCCeeEecccCCCCCCcccCcc
Q 008161 418 LCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT----SKV-HYYTKEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 418 L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~----~Ga-~v~~~~~~~~v~a~~~~~v~~~vVDTt 492 (575)
|+|.......+ ..+.++.|...|++.|+||.|. +|+ +++.++...+++. ++++ ++|++
T Consensus 141 L~g~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~d~~ 203 (254)
T TIGR00097 141 LLGTKIRTEQD------------MIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKA---PRIE--TKNTH 203 (254)
T ss_pred HhCCCCCCHHH------------HHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEe---cccC--CCCCC
Confidence 99865332111 2356777888899999999997 344 5566553333332 3444 78999
Q ss_pred CchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
||||+|.|+|+++|++| +++++|+++|++++..++..
T Consensus 204 GaGD~f~aalaa~la~g-------~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 204 GTGCTLSAAIAANLAKG-------LSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred ChHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999988764
No 56
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.64 E-value=8.3e-15 Score=146.82 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=117.1
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhc-CCEEEEcCCCCCcccc---ChhHHHHHHHHhcccCeEEeCCHHHHHHh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQF-GGIIFYDVNLPLPLWQ---SGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~-G~~Vv~D~~~~~~l~~---~~~~~~~~l~~ll~~aDII~~N~~Ea~~L 418 (575)
..+++.++.. . ..+.+..+.+.+++. ++++++||+.....|. ..+........+++++|+|+||..|++.|
T Consensus 68 ~~~~i~~G~l---~--~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L 142 (242)
T cd01169 68 PVDAIKIGML---G--SAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELL 142 (242)
T ss_pred CCCEEEECCC---C--CHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHH
Confidence 5688887532 1 345566666666665 8899999986543221 11222334456779999999999999999
Q ss_pred hCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcc----e-EEEecCCCeeEecccCCCCCCcccCccC
Q 008161 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK----V-HYYTKEDDGAVLGTEDAPLTPFTSDMSA 493 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G----a-~v~~~~~~~~v~a~~~~~v~~~vVDTtG 493 (575)
+|.......+ ..+.++.+...|++.||||.|..| + +++.++...+++. ++++ ++|++|
T Consensus 143 ~g~~~~~~~~------------~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~G 205 (242)
T cd01169 143 TGLEIATEED------------MMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFES---PRID--TKNTHG 205 (242)
T ss_pred hCCCCCCHHH------------HHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEec---ceeC--CCCCCC
Confidence 9975432111 124567777889999999999875 3 5666554344443 3343 689999
Q ss_pred chHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 494 SGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 494 AGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
|||+|+|+|+++|++| .++.+|+++|+++-..++.
T Consensus 206 aGD~f~a~l~a~l~~g-------~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 206 TGCTLSSAIAANLAKG-------LSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred hHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999998766553
No 57
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.64 E-value=4.8e-15 Score=152.53 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=120.5
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhh--cCCEEEEcCCCCC---ccccChhHHHHHHHHhcccCeEEeCCHHHH
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQ--FGGIIFYDVNLPL---PLWQSGEETKMFIQQAWTLADVIEVTKQEL 415 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~--~G~~Vv~D~~~~~---~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea 415 (575)
+..+|.|+++.+. +....+.+.++++..+. .+.++++||.... .+|.+.+........+++++|+|+||..|+
T Consensus 86 l~~~d~i~~G~l~--s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea 163 (281)
T PRK08176 86 LRQLRAVTTGYMG--SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFEL 163 (281)
T ss_pred cccCCEEEECCCC--CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHH
Confidence 3478989887532 33455666677766553 4788999998543 245333222333346889999999999999
Q ss_pred HHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcc-------eEEEecCCCeeEecccCCCCCCcc
Q 008161 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-------VHYYTKEDDGAVLGTEDAPLTPFT 488 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G-------a~v~~~~~~~~v~a~~~~~v~~~v 488 (575)
+.|+|....+..+ ..+.++++++.|++.||||.|..| +++++++.. ++... +.. .
T Consensus 164 ~~L~g~~~~~~~~------------~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~-~~~~~---~~~--~ 225 (281)
T PRK08176 164 EILTGKPCRTLDS------------AIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSV-NVISH---PRV--D 225 (281)
T ss_pred HHHhCCCCCCHHH------------HHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCce-EEEec---Ccc--C
Confidence 9999865432111 135678888889999999999988 566665532 22222 222 5
Q ss_pred cCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 489 SDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 489 VDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
+|++||||+|+|+|+++|++| .++++|+++|+..-..++.
T Consensus 226 ~~~~GaGD~faa~~~a~l~~g-------~~l~~Av~~A~~~v~~~i~ 265 (281)
T PRK08176 226 TDLKGTGDLFCAELVSGLLKG-------KALTDAAHRAGLRVLEVMR 265 (281)
T ss_pred CCCCChhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999 9999999999988766554
No 58
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.64 E-value=7.1e-15 Score=150.18 Aligned_cols=164 Identities=13% Similarity=-0.003 Sum_probs=118.1
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCE-EEEcCCCCCccc---cChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGI-IFYDVNLPLPLW---QSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~-Vv~D~~~~~~l~---~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.++|.++-+. +.+.+..+++.+++.+.+ |++||....... ........+...+++++|+|+||..|++.|+
T Consensus 73 ~~~ikiG~l~-----~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 147 (268)
T PRK12412 73 VDALKTGMLG-----SVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLS 147 (268)
T ss_pred CCEEEECCCC-----CHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHh
Confidence 7888886421 456677777788877776 999997533211 0111223345568899999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcce------EEEecCCCeeEecccCCCCCCcccCccC
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKV------HYYTKEDDGAVLGTEDAPLTPFTSDMSA 493 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga------~v~~~~~~~~v~a~~~~~v~~~vVDTtG 493 (575)
|....+..+ ..++++++.+.|++.|+||.|..|+ +++..+....++. ++++ ++||+|
T Consensus 148 g~~~~~~~~------------~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~---~~v~--~~~t~G 210 (268)
T PRK12412 148 GVKINSLED------------MKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLES---EKID--TTNTHG 210 (268)
T ss_pred CcCCCCHHH------------HHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEe---CccC--CCCCCc
Confidence 875432211 2366777888899999999998753 3344332123332 3454 789999
Q ss_pred chHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 494 SGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 494 AGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
|||+|+|+|+++|++| +++++|+++|.++...++..
T Consensus 211 aGD~f~aa~aa~l~~g-------~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 211 AGCTYSAAITAELAKG-------KPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred hHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999877764
No 59
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.63 E-value=9e-15 Score=148.97 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=118.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCC-EEEEcCCCCC----ccccChhHHHHHHHHhcccCeEEeCCHHHHHH
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG-IIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~-~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~ 417 (575)
..+.+.++.+ . ..+.+..+++.+++++. +|++||.... .+|. .+........+++++|+|+||..|++.
T Consensus 73 ~~~ai~iG~l---~--~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~ 146 (266)
T PRK06427 73 RIDAVKIGML---A--SAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLA-DDAVAALRERLLPLATLITPNLPEAEA 146 (266)
T ss_pred CCCEEEECCc---C--CHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhCcCeEEcCCHHHHHH
Confidence 4677877642 1 34566677777777775 7999997543 2332 222233344689999999999999999
Q ss_pred hhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCC--cce----EEEecCCCeeEecccCCCCCCcccCc
Q 008161 418 LCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT--SKV----HYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 418 L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~--~Ga----~v~~~~~~~~v~a~~~~~v~~~vVDT 491 (575)
|+|....+..+. ..+.++.+.+.|++.||||.|. +|. +++.++....++. ++++ ++|+
T Consensus 147 L~g~~~~~~~~~-----------~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~---~~~~--~~~~ 210 (266)
T PRK06427 147 LTGLPIADTEDE-----------MKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSA---PRIP--TKNT 210 (266)
T ss_pred HhCCCCCCcHHH-----------HHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEe---eeEC--CCCC
Confidence 998753321110 1356777878899999999998 553 5566554333332 3343 6799
Q ss_pred cCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+||||+|+|+|+++|++| .++.+|+++|++++..++..
T Consensus 211 ~GaGD~f~a~l~~~l~~g-------~~l~~A~~~A~~~~~~~i~~ 248 (266)
T PRK06427 211 HGTGCTLSAAIAAELAKG-------ASLLDAVQTAKDYVTRAIRH 248 (266)
T ss_pred CChHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999888765
No 60
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.61 E-value=5.3e-15 Score=154.03 Aligned_cols=253 Identities=15% Similarity=0.142 Sum_probs=167.3
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
+-+|+|...+|+....+.... .+..+.+....+..||.|.|.|.++++||..+.|+++||+|.
T Consensus 342 KPv~vGa~i~D~~~k~d~d~K----------~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~------- 404 (614)
T KOG3009|consen 342 KPVSVGATIVDFEAKTDEDVK----------DDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDN------- 404 (614)
T ss_pred CceeecceEEEeEEeeccccc----------ccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCC-------
Confidence 348999999999988753211 133345678889999999999999999999999999999992
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
+++ + +.... ...-+...+++ .++++++++ +.....+.+
T Consensus 405 -----------------------------n~~--~-~~~~~----~~~~e~~~dl~-~a~~I~~Ds-----NiS~~~Ma~ 442 (614)
T KOG3009|consen 405 -----------------------------NGH--F-FRQNS----HKIVESNEDLL-SADFILLDS-----NISVPVMAR 442 (614)
T ss_pred -----------------------------cch--h-hhhhh----hhhhhhhhhhh-cCCEEEEcC-----CCCHHHHHH
Confidence 111 0 01000 01112223445 789999985 345677888
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHh-cccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHHH
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQA-WTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~l-l~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
+++ ++.+.++|+|.|...... ...+.-+ ...++.|.||..|+...........+ ..+++.... ..+.
T Consensus 443 il~-ak~~k~~V~fEPTd~~k~-------~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~n---ps~~q~~~~-~~~~ 510 (614)
T KOG3009|consen 443 ILE-AKKHKKQVWFEPTDIDKV-------KKVFKTLLVGAITAISPNANELLKAAKLCHVSVN---PSVIQTADG-VLEL 510 (614)
T ss_pred HHH-hhhccCceEecCCCchhh-------hhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeC---hhhhccchH-HHHH
Confidence 888 899999999998754332 2223222 23489999999998533211110000 001111100 0122
Q ss_pred H---HHHHhcCCcEEEEecCCcceEEEecCCCe--eEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhH
Q 008161 445 I---APLWHENLKVLFVTNGTSKVHYYTKEDDG--AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 445 ~---~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~--~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
+ ..........+|+|+-.+|+++..++..+ ++..++.+++..++++..||||+|++||+++++++ .++
T Consensus 511 ~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~-------~~v 583 (614)
T KOG3009|consen 511 IEKEKTKLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHN-------KTV 583 (614)
T ss_pred HHHHHHHhhcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcC-------cch
Confidence 2 22233467899999999999877665443 44444444444468999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHccc
Q 008161 520 VRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~ 536 (575)
.+++.-+..|+..-++.
T Consensus 584 ~es~~gg~~~~ralls~ 600 (614)
T KOG3009|consen 584 VESLQGGQECARALLST 600 (614)
T ss_pred HhhccccHHHHHHHHhc
Confidence 99999997777655443
No 61
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.60 E-value=1.6e-14 Score=157.85 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCC----ccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccc
Q 008161 359 MKSTTLQAIKISKQFGGIIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 359 ~~e~~~~ll~~ak~~G~~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
..+.+..+++.++++|++|+|||+++. ++|. .+........+++++|+|+||..|++.|+|....+..+
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~-~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d------ 154 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLR-EDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVED------ 154 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHH------
Confidence 457888899999999999999997653 4553 22223344678899999999999999999975432211
Q ss_pred ccccCCcHHHHHHHHh-cCCcEEEEecCC----cce-EEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHc
Q 008161 435 SKFVHYEPEVIAPLWH-ENLKVLFVTNGT----SKV-HYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV 508 (575)
Q Consensus 435 ~~~~~~~~e~~~~L~~-~g~k~VVVT~G~----~Ga-~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~ 508 (575)
..++++.|.. .|++.||||.|. .|+ +++..+....++. ++++ ++|++||||+|+|+|+++|++
T Consensus 155 ------~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~---~~v~--~~dt~GAGDaFsAa~aa~l~~ 223 (448)
T PRK08573 155 ------ARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRA---PRVE--SGCTHGTGCSFSAAIAAGLAK 223 (448)
T ss_pred ------HHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEe---cCcC--CCCCCChHHHHHHHHHHHHHc
Confidence 1255666764 699999999985 354 4444443223332 3444 789999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 509 QPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 509 g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
| +++.+|+++|+.++..++.
T Consensus 224 G-------~~l~eAl~~A~~~~~~al~ 243 (448)
T PRK08573 224 G-------LDPEEAIKTAKKFITMAIK 243 (448)
T ss_pred C-------CCHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999988888
No 62
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.55 E-value=1.5e-13 Score=140.63 Aligned_cols=165 Identities=14% Similarity=-0.001 Sum_probs=114.5
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCC-EEEEcCCCCCccc---cChhHHHHHHHHhcccCeEEeCCHHHHHHh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG-IIFYDVNLPLPLW---QSGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~-~Vv~D~~~~~~l~---~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L 418 (575)
..+.|.++-+. ..+.+..+++.+++.+. +|++||.....-. ...+........+++++|+|+||..|++.|
T Consensus 74 ~~~aikiG~l~-----s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L 148 (270)
T PRK12616 74 GVDAMKTGMLP-----TVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQL 148 (270)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHH
Confidence 35777776321 34566666777777663 6999998642211 011222333445888999999999999999
Q ss_pred hCCC-CCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcce------EEEecCCCeeEecccCCCCCCcccCc
Q 008161 419 CGIK-PTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKV------HYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 419 ~g~~-~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga------~v~~~~~~~~v~a~~~~~v~~~vVDT 491 (575)
+|.. ..+..+ ..+.++.+.+.|++.||||.|..|. +++.++....++. +.++ ++|+
T Consensus 149 ~g~~~~~~~~~------------~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~---~~~~--~~~t 211 (270)
T PRK12616 149 SGMGEIKTVEQ------------MKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLES---EMID--TPYT 211 (270)
T ss_pred cCCCCCCCHHH------------HHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEe---eeeC--CCCC
Confidence 9862 222111 2356777888899999999998762 4555443233332 3344 6799
Q ss_pred cCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+||||+|.|+|+++|++| .++++|+++|.++...++..
T Consensus 212 ~GaGD~fsaalaa~l~~g-------~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 212 HGAGCTFSAAVTAELAKG-------SEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CcHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999998877664
No 63
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.40 E-value=1.1e-11 Score=128.66 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=109.1
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcC--CEEEEcCCC--CCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFG--GIIFYDVNL--PLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G--~~Vv~D~~~--~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.++|..+.++ +....+.+.++++.+++.+ ++|++||++ +..+|. .+...+.+..+++++|+|+||..|++.|+
T Consensus 78 ~~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L~ 154 (296)
T PTZ00344 78 YTYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLLS 154 (296)
T ss_pred CCEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHHh
Confidence 3545444332 3334555566666656555 589999865 334564 35566777789999999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEe---cCCcc----eEEEec--CCC-eeEecccCCCCCCccc
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVT---NGTSK----VHYYTK--EDD-GAVLGTEDAPLTPFTS 489 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT---~G~~G----a~v~~~--~~~-~~v~a~~~~~v~~~vV 489 (575)
|....+..+ ..+.++.+.+.|++.|||| +|..| +++... ++. ..+..+..+.+ .+
T Consensus 155 g~~~~~~~~------------~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~ 219 (296)
T PTZ00344 155 GVEVKDLSD------------ALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYI---EG 219 (296)
T ss_pred CCCCCCHHH------------HHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEecccc---CC
Confidence 975332111 1256677777899999999 66566 444432 111 11111222333 35
Q ss_pred CccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 490 DMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 490 DTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+++||||+|+|+|++.+..| ++.+|+++|.+.-..++..
T Consensus 220 ~~~GaGD~f~A~~~a~l~~g--------~~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 220 RYTGTGDLFAALLLAFSHQH--------PMDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred CCCCchHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHH
Confidence 77999999999999666554 7999999998887766553
No 64
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.34 E-value=2.3e-11 Score=135.11 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCC----CccccCh--hHHHHHH-HHhcccCeEEeCCHHHHHHhhCCC-CCccccccc
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLP----LPLWQSG--EETKMFI-QQAWTLADVIEVTKQELEFLCGIK-PTEEFDTKN 431 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~----~~l~~~~--~~~~~~l-~~ll~~aDII~~N~~Ea~~L~g~~-~~~~~d~~~ 431 (575)
.+.+..+++.++ +.+|++||... ..++... +...+.+ ..+++++|+|+||..|++.|+|.. .....+
T Consensus 311 ~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~--- 385 (504)
T PTZ00347 311 ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYE--- 385 (504)
T ss_pred HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHH---
Confidence 455566666664 67899999763 2333210 1112222 368899999999999999999963 211111
Q ss_pred cccccccCCcHHHHHHHHhcCCcEEEEecCCcc-------eEEEecC-CC-eeEecccCCCCCCcccCccCchHHHHHHH
Q 008161 432 NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-------VHYYTKE-DD-GAVLGTEDAPLTPFTSDMSASGDGIVAGI 502 (575)
Q Consensus 432 ~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G-------a~v~~~~-~~-~~v~a~~~~~v~~~vVDTtGAGDaF~AGf 502 (575)
..++++.+.+.|++.||||.|..| .+++..+ .. ..++. ++++ ++|++||||+|+|+|
T Consensus 386 ---------~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~---~~i~--~~~~~GaGD~fsaai 451 (504)
T PTZ00347 386 ---------ARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTA---NRIA--TINTHGTGCTLASAI 451 (504)
T ss_pred ---------HHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEe---eeEC--CCCCCChHHHHHHHH
Confidence 135667787889999999999963 3445432 22 23332 3444 689999999999999
Q ss_pred HHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 503 MRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 503 l~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+++|++| .++.+|+++|.++-...+..
T Consensus 452 aa~la~G-------~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 452 SSFLARG-------YTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred HHHHhCC-------CCHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999998877665543
No 65
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.34 E-value=3.4e-11 Score=133.70 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=115.1
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCE-EEEcCCCCCc---cccChhHHHHHH-HHhcccCeEEeCCHHHHHH
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGI-IFYDVNLPLP---LWQSGEETKMFI-QQAWTLADVIEVTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~-Vv~D~~~~~~---l~~~~~~~~~~l-~~ll~~aDII~~N~~Ea~~ 417 (575)
..+.+.++.. . ..+.+..+++.+++.+.+ |++||..... .+.. +...+.+ ..+++++|+|+||..|++.
T Consensus 78 ~~~aik~G~l---~--~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~-~~~~~~l~~~Ll~~adiitPN~~Ea~~ 151 (502)
T PLN02898 78 PVDVVKTGML---P--SAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAG-PSILSALREELLPLATIVTPNVKEASA 151 (502)
T ss_pred CCCEEEECCc---C--CHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCC-HHHHHHHHHhhhccCeEEcCCHHHHHH
Confidence 3566766532 1 356677777777877775 9999964221 1111 2223333 4688999999999999999
Q ss_pred hhCCCCCc-cccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcc------eEEEecCCCeeEecccCCCCCCcccC
Q 008161 418 LCGIKPTE-EFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK------VHYYTKEDDGAVLGTEDAPLTPFTSD 490 (575)
Q Consensus 418 L~g~~~~~-~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G------a~v~~~~~~~~v~a~~~~~v~~~vVD 490 (575)
|+|..... ..+ ..+.++.+.+.|++.||||.|..+ .+++.++...+++ .++++ .+|
T Consensus 152 L~g~~~~~~~~~------------~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~---~~~i~--~~~ 214 (502)
T PLN02898 152 LLGGDPLETVAD------------MRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELR---SSRIK--TRN 214 (502)
T ss_pred HhCCCCCCCHHH------------HHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEe---cceeC--CCC
Confidence 99853221 111 236677788889999999999753 3555543222232 23344 689
Q ss_pred ccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 491 MSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 491 TtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
++|+||+|.|+|+++|++| +++++|+++|+.+...++..
T Consensus 215 t~GaGD~fsaaiaa~l~~G-------~~l~eAv~~A~~~v~~ai~~ 253 (502)
T PLN02898 215 THGTGCTLASCIAAELAKG-------SDMLSAVKVAKRYVETALEY 253 (502)
T ss_pred CCchhhhHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999888875
No 66
>PLN02978 pyridoxal kinase
Probab=99.33 E-value=6.2e-11 Score=123.63 Aligned_cols=166 Identities=16% Similarity=0.085 Sum_probs=108.9
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhh--cCCEEEEcCCCCC--ccccChhHHHHHH-HHhcccCeEEeCCHHHHHHh
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQ--FGGIIFYDVNLPL--PLWQSGEETKMFI-QQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~--~G~~Vv~D~~~~~--~l~~~~~~~~~~l-~~ll~~aDII~~N~~Ea~~L 418 (575)
.+.++++.+ .+....+.+.++++.++. .++++++||+... .+|.. +...+.+ ..+++++|+|+||..|++.|
T Consensus 87 ~~ai~~G~l--~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~-~~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLLTGYI--GSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVP-PELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEEeccc--CCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCC-hhHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 566655432 234567788888888876 4578999998654 35532 2334445 45999999999999999999
Q ss_pred hCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCC-cceEEEe---c------CCCeeEecccCCCCCCcc
Q 008161 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT-SKVHYYT---K------EDDGAVLGTEDAPLTPFT 488 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~-~Ga~v~~---~------~~~~~v~a~~~~~v~~~v 488 (575)
+|....+..+ ..+.++.+...|++.||||.+. .|.++.. . ++.+.+. .+.++ .
T Consensus 164 ~g~~~~~~~~------------~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~--~ 226 (308)
T PLN02978 164 TGIRIVTEED------------AREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIV---IPKIP--A 226 (308)
T ss_pred hCCCCCCHHH------------HHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEE---ccCCC--C
Confidence 9875332111 1356777878899999998744 3433221 1 1112222 23343 2
Q ss_pred cCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 489 SDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 489 VDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
. ++|+||+|+|.+++.+..|+ .++++|+++|.+.-...+..
T Consensus 227 ~-~~GtGD~fsA~laa~l~~g~------~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 227 Y-FTGTGDLMAALLLGWSHKYP------DNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred C-CCCchHHHHHHHHHHHhcCC------cCHHHHHHHHHHHHHHHHHH
Confidence 3 58999999997777777651 47999999998877655543
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.23 E-value=1.4e-10 Score=117.19 Aligned_cols=164 Identities=15% Similarity=0.075 Sum_probs=103.4
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC---ccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL---PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~---~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
..+.|.++.+. + .+.+..+.+..+..+.++++||.... ......+........+++++|+|+||..|++.|+
T Consensus 60 ~~~aikiG~l~--~---~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~ 134 (246)
T PF08543_consen 60 KFDAIKIGYLG--S---AEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLT 134 (246)
T ss_dssp C-SEEEE-S-S--S---HHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHH
T ss_pred cccEEEEcccC--C---chhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHh
Confidence 57888876432 2 33444444444557779999996431 1111222233344459999999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCc----c---eEEEecCCCeeEecccCCCCCCcccCcc
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS----K---VHYYTKEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~----G---a~v~~~~~~~~v~a~~~~~v~~~vVDTt 492 (575)
|....+..+ ..+++++|++.|++.||||-+.. + .+++..+....+.. +.++ ..+..
T Consensus 135 g~~i~~~~~------------~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~--~~~~~ 197 (246)
T PF08543_consen 135 GREINSEED------------IEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSS---PRIP--TGSFH 197 (246)
T ss_dssp TS--SSHHH------------HHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEE---EEEC--TSGCT
T ss_pred CCCCCChHh------------HHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeecce---eEEc--CCCCC
Confidence 966543322 24678889899999999998763 2 23343332222221 2222 25788
Q ss_pred CchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
|.||.|.|+|++.|++| +++++|++.|...-...+.
T Consensus 198 GTGd~fss~laa~l~~g-------~~l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 198 GTGDLFSSALAAFLAKG-------YSLEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp THHHHHHHHHHHHHHTT-------SSHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999887766654
No 68
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.23 E-value=2.3e-10 Score=115.86 Aligned_cols=164 Identities=12% Similarity=-0.048 Sum_probs=110.7
Q ss_pred hhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 340 VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.+..+++++++.- + . ..+.+..+++.++++++++++|+.. ++.... .... .+++.++||+||..|++.|+
T Consensus 74 ~~~~~d~v~ig~g-l-~--~~~~~~~i~~~~~~~~~pvVlDa~~---~~~~~~--~~~~-~~~~~~~iltPn~~E~~~L~ 143 (254)
T cd01171 74 LLERADAVVIGPG-L-G--RDEEAAEILEKALAKDKPLVLDADA---LNLLAD--EPSL-IKRYGPVVLTPHPGEFARLL 143 (254)
T ss_pred hhccCCEEEEecC-C-C--CCHHHHHHHHHHHhcCCCEEEEcHH---HHHhhc--Chhh-hccCCCEEECCCHHHHHHHh
Confidence 4567889988752 1 1 1156778888888889999999752 110000 0000 24577999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHH
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIV 499 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~ 499 (575)
|....+..+ ...+.++++.+.+. .+||+.|. +.+++++++..++.. ...+ .++++|+||+|.
T Consensus 144 g~~~~~~~~-----------~~~~~a~~l~~~~~-~~vvlkG~-~~~i~~~~~~~~~~~---~~~~--~~~~~GaGD~la 205 (254)
T cd01171 144 GALVEEIQA-----------DRLAAAREAAAKLG-ATVVLKGA-VTVIADPDGRVYVNP---TGNP--GLATGGSGDVLA 205 (254)
T ss_pred CCChhhhhh-----------HHHHHHHHHHHHcC-cEEEEcCC-CCEEECCCCcEEEEC---CCCc--ccccCchHHHHH
Confidence 875322110 01356677777664 55556674 666676544444432 2333 689999999998
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccc
Q 008161 500 AGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQA 538 (575)
Q Consensus 500 AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G 538 (575)
|.+.+.+++| .++.+|+++|+.+.+.+.....
T Consensus 206 g~iaa~la~g-------~~~~eA~~~A~~~~~~a~~~~~ 237 (254)
T cd01171 206 GIIAALLAQG-------LSPLEAAALAVYLHGLAGDLAA 237 (254)
T ss_pred HHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899 9999999999999998877543
No 69
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.23 E-value=2e-10 Score=128.41 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=105.6
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC----ccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.+.|.++-+ .+....+.+.++++..+ +.+|++||..+. .++ .+...+.+.++++++|+|+||..|++.|+
T Consensus 99 ~~aikiG~l--~s~~~i~~v~~~l~~~~--~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~Lt 172 (530)
T PRK14713 99 VDAVKIGML--GDAEVIDAVRTWLAEHR--PPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVLL 172 (530)
T ss_pred CCEEEECCc--CCHHHHHHHHHHHHhCC--CCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHHh
Confidence 466766532 12234455555554432 346999998643 343 23455666789999999999999999999
Q ss_pred CCCCC-ccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcc-----eEEEecCC-CeeEecccCCCCCCcccCcc
Q 008161 420 GIKPT-EEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-----VHYYTKED-DGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 420 g~~~~-~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G-----a~v~~~~~-~~~v~a~~~~~v~~~vVDTt 492 (575)
|.... ...+ ..+.++++...+...||||.|..+ .+++..++ ...++. ++++ ++|++
T Consensus 173 g~~~~~~~~d------------~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~---~~v~--~~~t~ 235 (530)
T PRK14713 173 GEPPATTWEE------------ALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPG---PRVD--TRNTH 235 (530)
T ss_pred CCCCCCCHHH------------HHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEee---eeeC--CCCCC
Confidence 86532 1111 124566776655568999988642 34444433 223332 3444 68999
Q ss_pred CchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHH
Q 008161 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCG 530 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaA 530 (575)
|+||+|.|+|+++|++| .++.+|+++|++.-
T Consensus 236 GaGD~fsaalaa~La~G-------~~l~eAv~~A~~~v 266 (530)
T PRK14713 236 GTGCSLSSALATRLGRG-------GDWAAALRWATAWL 266 (530)
T ss_pred cHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHH
Confidence 99999999999999999 99999999999843
No 70
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.18 E-value=2.8e-10 Score=131.93 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=111.6
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhc-CCEEEEcCCCCC----ccccChhHHHHHHHHhcccCeEEeCCHHHHHHh
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQF-GGIIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~-G~~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L 418 (575)
.+.|-++-+ . +.+.+..+++.+++. +.+|++||.... .++ .+...+.+..+++.+|+|+||..|+..|
T Consensus 311 ~~aiKiGmL---~--s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~--~~~~~~~l~~Llp~adlItPN~~Ea~~L 383 (755)
T PRK09517 311 VDAVKLGML---G--SADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLL--DADATEALRRLAVHVDVVTPNIPELAVL 383 (755)
T ss_pred CCEEEECCC---C--CHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCC--CHHHHHHHHHHhCcccCccCCHHHHHHH
Confidence 466666532 1 345566666777764 467999997532 233 1233444567999999999999999999
Q ss_pred hCCCC-CccccccccccccccCCcHHHHHHHHhcCCcEEEEecCC------cceEEEecCCCeeEecccCCCCCCcccCc
Q 008161 419 CGIKP-TEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT------SKVHYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 419 ~g~~~-~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~------~Ga~v~~~~~~~~v~a~~~~~v~~~vVDT 491 (575)
+|... ....+ ..+.++++.+.+...||||.|. .|++++.++....++. +.++ ++|+
T Consensus 384 ~g~~~~~~~~d------------~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~---~~v~--~~~t 446 (755)
T PRK09517 384 CGEAPAITMDE------------AIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVEN---PRVN--TTNS 446 (755)
T ss_pred hCCCCCCCHHH------------HHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEee---cccC--CCCC
Confidence 98531 11111 2355677766544589999993 4666554332223332 3444 7899
Q ss_pred cCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+|+||+|.|+|+++|++| .++++|+++|+++-..++..
T Consensus 447 ~GaGDtfsaaiaa~La~G-------~sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 447 HGTGCSLSAALATLIAAG-------ESVEKALEWATRWLNEALRH 484 (755)
T ss_pred cChHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 99999999999988777654
No 71
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.15 E-value=9.6e-10 Score=111.00 Aligned_cols=172 Identities=16% Similarity=0.085 Sum_probs=121.6
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhc--CCEEEEcCCCCC--ccccChhHHHHHHHHhcccCeEEeCCHHH
Q 008161 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQF--GGIIFYDVNLPL--PLWQSGEETKMFIQQAWTLADVIEVTKQE 414 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~--G~~Vv~D~~~~~--~l~~~~~~~~~~l~~ll~~aDII~~N~~E 414 (575)
+.+.++|.|+.+.++ +......+..+++..|+. ...+++||.... .++...+....+..++++.+|+|.||..|
T Consensus 69 ~~~~~~davltGYlg--s~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fE 146 (281)
T COG2240 69 DKLGECDAVLTGYLG--SAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFE 146 (281)
T ss_pred ccccccCEEEEccCC--CHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHH
Confidence 356788988765433 344667778888887776 456999996432 45544444444455799999999999999
Q ss_pred HHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCC-----cceEEEecCCCeeEecccCCCCCCccc
Q 008161 415 LEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT-----SKVHYYTKEDDGAVLGTEDAPLTPFTS 489 (575)
Q Consensus 415 a~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~-----~Ga~v~~~~~~~~v~a~~~~~v~~~vV 489 (575)
++.|+|....+..+ ..++++.|.+.|++.|+||.=. .|.+++..........+. +.+ ..
T Consensus 147 Le~Ltg~~~~~~~d------------a~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v---~~ 210 (281)
T COG2240 147 LEILTGKPLNTLDD------------AVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLV---PF 210 (281)
T ss_pred HHHHhCCCCCCHHH------------HHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcC---CC
Confidence 99999998655433 2367777888899999999533 356666554321111111 123 24
Q ss_pred CccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 490 DMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 490 DTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
+.+|.||.|.|-|++.|++| .++.+|+..+..+-...++
T Consensus 211 ~~~GtGDL~sallla~lL~g-------~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 211 IPNGTGDLFSALLLARLLEG-------LSLTQALERATAAVYEVLQ 249 (281)
T ss_pred CCCCchHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999 8999999999887766555
No 72
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.13 E-value=2e-09 Score=108.50 Aligned_cols=174 Identities=17% Similarity=0.058 Sum_probs=111.8
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhccc--CeEEeCCHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL--ADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~--aDII~~N~~Ea 415 (575)
.+.++.+|++++. ..+..+...+.+..+++.+++.+++|++||...... .. ..+.+..++.. +|||+||..|+
T Consensus 44 ~~~l~~~d~vvi~-~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~---~~-~~~~~~~ll~~~~~~ilTPN~~Ea 118 (242)
T cd01170 44 EELAKIAGALVIN-IGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGAT---SF-RTEVAKELLAEGQPTVIRGNASEI 118 (242)
T ss_pred HHHHHHcCcEEEe-CCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcc---hh-HHHHHHHHHhcCCCeEEcCCHHHH
Confidence 4567889999996 333333345666777777888999999998643210 11 11233455554 99999999999
Q ss_pred HHhhCCCCCccc-cccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCc
Q 008161 416 EFLCGIKPTEEF-DTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSAS 494 (575)
Q Consensus 416 ~~L~g~~~~~~~-d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGA 494 (575)
..|+|....... +... . . .....+.++++...+...|++| |.... +++++....++. .+.. +.++.|+
T Consensus 119 ~~L~g~~~~~~~~~~~~-~--~-~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~~~~~~~---~~~~--~~~v~Gt 187 (242)
T cd01170 119 AALAGLTGLGKGVDSSS-S--D-EEDALELAKALARKYGAVVVVT-GEVDY-ITDGERVVVVKN---GHPL--LTKITGT 187 (242)
T ss_pred HHHhCCCCCcCcccCCC-c--c-hHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECCEEEEEeC---CCcc--ccCCCch
Confidence 999987532100 0000 0 0 0002366777776665678999 66554 455443334432 1111 4556899
Q ss_pred hHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHc
Q 008161 495 GDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQ 534 (575)
Q Consensus 495 GDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v 534 (575)
||+|.|++.+.|+.| .++.+|+..|...-+.++
T Consensus 188 GdtLa~aiAa~LA~g-------~~~~~A~~~A~~~~~~a~ 220 (242)
T cd01170 188 GCLLGAVIAAFLAVG-------DDPLEAAVSAVLVYGIAG 220 (242)
T ss_pred HHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHH
Confidence 999999999999999 899999999876665554
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.11 E-value=3.3e-09 Score=108.70 Aligned_cols=175 Identities=12% Similarity=0.057 Sum_probs=110.2
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHh
Q 008161 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L 418 (575)
..+..++++++++. +... ..+..+++.+++.+.+|++|+... .+ ..........+++|+||..|++.|
T Consensus 88 ~~~~~~davvig~G-l~~~---~~~~~l~~~~~~~~~pvVlDa~g~-~l-------~~~~~~~~~~~~vItPN~~El~~L 155 (272)
T TIGR00196 88 ELLERYDVVVIGPG-LGQD---PSFKKAVEEVLELDKPVVLDADAL-NL-------LTYDKPKREGEVILTPHPGEFKRL 155 (272)
T ss_pred hhhccCCEEEEcCC-CCCC---HHHHHHHHHHHhcCCCEEEEhHHH-HH-------HhhcccccCCCEEECCCHHHHHHH
Confidence 34567899999753 2221 226778888888899999997421 10 111100134689999999999999
Q ss_pred hCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHH
Q 008161 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGI 498 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF 498 (575)
+|.......+ ..+.++++.+. ...+||+.|..++++...+ ..++.. .+.+ ..+++|+||++
T Consensus 156 ~g~~~~~~~~------------~~~aa~~l~~~-~~~vVv~kG~~~~i~~~~~-~~~~~~---~~~~--~~~~~GaGD~l 216 (272)
T TIGR00196 156 LGLVNEIQGD------------RLEAAQDIAQK-LQAVVVLKGAADVIAAPDG-DLWINK---TGNA--ALAKGGTGDVL 216 (272)
T ss_pred hCCchhhhhh------------HHHHHHHHHHH-hCCEEEEcCCCCEEEcCCC-eEEEEC---CCCC--ccCCCCchHHH
Confidence 9864321111 23566777665 3468888999998655333 222221 2233 67899999995
Q ss_pred HHHHHHHHHcCCCCCCCchhHHHHHHHH---HHHHHHHccc-cccCCCCCCHHHHHhhh
Q 008161 499 VAGIMRMLTVQPHLITDKGYLVRTIKYA---IDCGVRDQWS-QARTLGYPPKGGMEEEV 553 (575)
Q Consensus 499 ~AGfl~~L~~g~~~~~d~~sl~eAl~~A---~aaAA~~v~~-~G~~~~~pt~eeve~~l 553 (575)
.|.+.+.+++| .++.+|+..| +..|+..+.. .|.. + .+..+|-+.|
T Consensus 217 ag~iaa~la~g-------~~~~~A~~~a~~~~~~a~~~~~~~~g~~-~-~~~~dl~~~i 266 (272)
T TIGR00196 217 AGLIGGLLAQN-------LDPFDAACNAAFAHGLAGDLALKNHGAY-G-LTALDLIEKI 266 (272)
T ss_pred HHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHHhcCCC-C-cCHHHHHHHH
Confidence 55555556688 8899999777 6677665543 3533 3 3556665554
No 74
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.08 E-value=3.1e-09 Score=106.77 Aligned_cols=152 Identities=21% Similarity=0.199 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHhhcC-CEEEEcCCCCC----ccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCC-CCCcccccccc
Q 008161 359 MKSTTLQAIKISKQFG-GIIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI-KPTEEFDTKNN 432 (575)
Q Consensus 359 ~~e~~~~ll~~ak~~G-~~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~-~~~~~~d~~~~ 432 (575)
..+.+..+.+..++++ .++++||.... .+. ..+....+...+++++++|.||..|++.|+|. ......+
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll-~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d---- 157 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLL-DEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEED---- 157 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCccc-ChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHH----
Confidence 4566677777778888 77999995432 221 12233344558999999999999999999995 4433222
Q ss_pred ccccccCCcHHHHHHHHhcCCcEEEEecCCcc----eEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHc
Q 008161 433 ARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK----VHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV 508 (575)
Q Consensus 433 ~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G----a~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~ 508 (575)
..++++.+.+.|++.|+||-|... -++|.++....+ +.+.+. .-+|-|+|++|.|++.+.|++
T Consensus 158 --------~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f---~~~ri~--t~~tHGTGCTlSaAIaa~LA~ 224 (263)
T COG0351 158 --------MKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTF---EAPRIP--TKNTHGTGCTLSAAIAANLAK 224 (263)
T ss_pred --------HHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEE---eccccC--CCCCCCccHHHHHHHHHHHHc
Confidence 235556666789999999988643 344555422222 223343 567889999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 509 QPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 509 g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
| .++.+|++.|-..-..++.
T Consensus 225 G-------~~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 225 G-------LSLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred C-------CCHHHHHHHHHHHHHHHHh
Confidence 9 9999999999988877776
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=98.72 E-value=4.6e-07 Score=94.51 Aligned_cols=140 Identities=10% Similarity=0.054 Sum_probs=89.5
Q ss_pred EEEEcCCCCCc----cccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCC----CCccccccccccccccCCcHHHHHH
Q 008161 376 IIFYDVNLPLP----LWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIK----PTEEFDTKNNARSKFVHYEPEVIAP 447 (575)
Q Consensus 376 ~Vv~D~~~~~~----l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~----~~~~~d~~~~~~~~~~~~~~e~~~~ 447 (575)
+|++||..... +....+....+...+++++++|+||..|++.|+|.. .....+ ..++++.
T Consensus 107 ~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~~~~~~~~~~------------~~~aA~~ 174 (321)
T PTZ00493 107 LVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALDCQMDLSKAN------------MTELCKL 174 (321)
T ss_pred eEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCcccCCCCHHH------------HHHHHHH
Confidence 49999964321 111011123334569999999999999999998821 111111 2467777
Q ss_pred HHh-cCCcEEEEecCCcc----------e--EEEecC--------------CC----eeEecccCCCCCCcccCccCchH
Q 008161 448 LWH-ENLKVLFVTNGTSK----------V--HYYTKE--------------DD----GAVLGTEDAPLTPFTSDMSASGD 496 (575)
Q Consensus 448 L~~-~g~k~VVVT~G~~G----------a--~v~~~~--------------~~----~~v~a~~~~~v~~~vVDTtGAGD 496 (575)
|.+ .|++.|+||-|... + +++..+ +. ..+..+..+.++ ..++-|+||
T Consensus 175 l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~--~~~~hGTGc 252 (321)
T PTZ00493 175 VTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVYKLRSKRKP--GKDIHGTGC 252 (321)
T ss_pred HHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccceEEEEEecccC--CCCCCChHH
Confidence 876 59999999987631 1 233211 00 011112222232 356789999
Q ss_pred HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 497 GIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 497 aF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+|.+++++.|++| .++++|++.|...-..++..
T Consensus 253 ~fASAIAa~LA~G-------~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 253 TLSTAIACYLAKK-------HNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999998777665553
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=98.71 E-value=6e-07 Score=91.71 Aligned_cols=173 Identities=16% Similarity=0.073 Sum_probs=106.4
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc--cCeEEeCCHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDII~~N~~Ea 415 (575)
.+.+..++.+++. ...+.+...+.+..+++.+++.++++++||...... .. ..+....+++ +++||+||..|+
T Consensus 49 ~~~~~~~~alvi~-~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~-~~---~~~~~~~ll~~~~~~vItPN~~E~ 123 (263)
T PRK09355 49 EEMAKIAGALVIN-IGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT-SY---RTEFALELLAEVKPAVIRGNASEI 123 (263)
T ss_pred HHHHHhcCceEEe-CCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc-hh---hHHHHHHHHHhcCCcEecCCHHHH
Confidence 3556778888885 444444445556777777888899999998643211 11 1222233333 689999999999
Q ss_pred HHhhCCCCCccc-cccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCc
Q 008161 416 EFLCGIKPTEEF-DTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSAS 494 (575)
Q Consensus 416 ~~L~g~~~~~~~-d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGA 494 (575)
..|+|....... +..... ....+.++.+.+++...|++|-+.. ++++++....+.. ..+ ...+.+|+
T Consensus 124 ~~L~g~~~~~~~vd~~~~~-----~~~~~~a~~la~~~~~~VvvkG~~d--~I~~~~~~~~~~~--g~~---~~~~v~Gt 191 (263)
T PRK09355 124 AALAGEAAETKGVDSTDGS-----ADAVEIAKAAAKKYGTVVVVTGEVD--YITDGERVVSVHN--GHP---LMTKVTGT 191 (263)
T ss_pred HHHhCCCcccCCcCCCCCH-----HHHHHHHHHHHHHhCCEEEEECCCc--EEEeCCEEEEEeC--CCc---ccCCcccc
Confidence 999986421100 000000 0023566677776556788885443 3344332223321 111 14566899
Q ss_pred hHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHc
Q 008161 495 GDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQ 534 (575)
Q Consensus 495 GDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v 534 (575)
||++.|.+.+.|+.| .++.+|+..|...-+.+-
T Consensus 192 Gc~L~~~iaa~lA~g-------~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 192 GCLLSAVVAAFAAVE-------KDYLEAAAAACAVYGIAG 224 (263)
T ss_pred cHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHH
Confidence 999999999999999 788888888877655543
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.48 E-value=3.8e-06 Score=85.11 Aligned_cols=172 Identities=11% Similarity=-0.017 Sum_probs=103.0
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc--cCeEEeCCHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDII~~N~~Ea 415 (575)
.+.+..++.+.+.-- ++.....+.+..+++.+++++++|++||...... .. .......+++ ++++|+||..|+
T Consensus 44 ~~~~~~~~al~ik~G-~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s---~~-r~~~~~~Ll~~~~~~vITpN~~E~ 118 (249)
T TIGR00694 44 AELAKIAGALVINIG-TLDKESIEAMIAAGKSANELGVPVVLDPVGVGAT---KF-RTETALELLSEGRFAAIRGNAGEI 118 (249)
T ss_pred HHHHHHcCceEEeCC-CCCHHHHHHHHHHHHHHHhcCCCEEEcccccccc---hh-HHHHHHHHHhhcCCceeCCCHHHH
Confidence 345667888888632 2333346677777888888899999998643221 11 1233345565 479999999999
Q ss_pred HHhhCCCCCcc-ccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCc
Q 008161 416 EFLCGIKPTEE-FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSAS 494 (575)
Q Consensus 416 ~~L~g~~~~~~-~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGA 494 (575)
..|+|...... -|.... .+...+.++.+.+.+...|++|-+.. ++++++..+.+.. ..+. .-..+|.
T Consensus 119 ~~L~g~~~~~~gvd~~~~-----~~d~~~~a~~la~~~~~~VllkG~~D--~i~~~~~~~~~~~--g~~~---~~~~~Gt 186 (249)
T TIGR00694 119 ASLAGETGLMKGVDSGEG-----AADAIRAAQQAAQKYGTVVVITGEVD--YVSDGTSVYTIHN--GTEL---LGKITGS 186 (249)
T ss_pred HHHhCCCCCCCCcCCccc-----hHHHHHHHHHHHHHhCCEEEEECCCc--EEEeCCEEEEECC--CChH---HhCCccc
Confidence 99998641100 000000 00023566677666444777875432 3444332222211 1111 1224799
Q ss_pred hHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHH
Q 008161 495 GDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRD 533 (575)
Q Consensus 495 GDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~ 533 (575)
||++.+.+.+.|+.| .++.+|+..|...-..+
T Consensus 187 Gc~LssaIaa~LA~g-------~~~~~A~~~A~~~~~~a 218 (249)
T TIGR00694 187 GCLLGSVVAAFCAVE-------EDPLDAAISACLLYKIA 218 (249)
T ss_pred hHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHH
Confidence 999999999999999 88899988887544333
No 78
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.32 E-value=1.4e-05 Score=79.60 Aligned_cols=167 Identities=15% Similarity=0.135 Sum_probs=101.0
Q ss_pred hhccCcEEEEecccccccchHHHHHHHHHHHhhc--CCEEEEcCCCCC--ccccChhHHHHHHHHhcccCeEEeCCHHHH
Q 008161 340 VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQF--GGIIFYDVNLPL--PLWQSGEETKMFIQQAWTLADVIEVTKQEL 415 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~--G~~Vv~D~~~~~--~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea 415 (575)
.+...+++..+..+ +......+..++...++. +...++||.... .++...+-...+-..+++.+|+|.||..|+
T Consensus 78 n~~~Y~~vLTGY~~--n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~ 155 (308)
T KOG2599|consen 78 NLNKYDAVLTGYLP--NVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEA 155 (308)
T ss_pred cccccceeeeeccC--ChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhh
Confidence 34467777655332 223445556666666554 466788986432 344433333333334455699999999999
Q ss_pred HHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCc----c-eEE---EecCCCeeEecccCCCCCCc
Q 008161 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS----K-VHY---YTKEDDGAVLGTEDAPLTPF 487 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~----G-a~v---~~~~~~~~v~a~~~~~v~~~ 487 (575)
+.|+|......++. .+++..|+++|++.||||...- | .++ +..++......+ +.+
T Consensus 156 EiLtg~~I~t~eda------------~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~i--pki--- 218 (308)
T KOG2599|consen 156 EILTGMEIRTEEDA------------KRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLI--PKI--- 218 (308)
T ss_pred hhhcCCeeccHHHH------------HHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEe--ccc---
Confidence 99999987665442 3778888889999999996433 4 122 222222222222 222
Q ss_pred ccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHH
Q 008161 488 TSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDC 529 (575)
Q Consensus 488 vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aa 529 (575)
.-=-||.||.|.|-+++.+...+. ..++..|+..+..+
T Consensus 219 ~~~FtGTGDLfsaLLla~~~~~~~----~~~l~~a~e~~ls~ 256 (308)
T KOG2599|consen 219 DGVFTGTGDLFSALLLAWLHESPD----NDDLSKAVEQVLSS 256 (308)
T ss_pred ceEEecccHHHHHHHHHHHhcCCC----cchHHHHHHHHHHH
Confidence 123479999999988888776521 24556666555444
No 79
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.68 E-value=0.0023 Score=69.73 Aligned_cols=164 Identities=17% Similarity=0.085 Sum_probs=90.3
Q ss_pred EEecCChHHHHHHHHHHcCCCe--EEEEEeCCChHHHHHHHHHHh-CCCccc------eEEE------cCCCCCeEEEEE
Q 008161 247 IRSPGGCTGSAAIALARLGGKV--AFMGKLGDDEYGQAMLYYMNV-NNVQTR------SVRI------DAKRPTAVSQMK 311 (575)
Q Consensus 247 ~~~~GG~a~NvA~aLarLG~~v--~lvg~VG~D~~G~~i~~~L~~-~GVdt~------~v~~------~~~~~T~~~~i~ 311 (575)
....||.|.-+|..|+++|..+ .+++.++. .....+.. .+|-.- .+.. .++..+-+-+|+
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p~lsk-----~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~ 172 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTPWLSK-----KQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIF 172 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEE
Confidence 3689999999999999999884 44444553 23344422 122211 0100 012222234444
Q ss_pred EcCCCCe--------------EEEEecCCccccCC-ccccchhhhc----cCcEEEEecccccccc-----h----HHHH
Q 008161 312 IGKRGRL--------------RMTCVKPCAEDALT-KSEINIDVLK----EAKMFYFSTHSMLERN-----M----KSTT 363 (575)
Q Consensus 312 vd~~Ger--------------~~~~~~~ga~~~lt-~e~i~~~~l~----~ad~v~~sg~~l~~~~-----~----~e~~ 363 (575)
-.+.|.+ ++++.....+..+. .+++ .+.+. .+|.++++|+.++... . .+.+
T Consensus 173 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef-~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~ 251 (463)
T PRK03979 173 EFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDEL-KEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRA 251 (463)
T ss_pred EeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHH-HHHHHhhccCCCEEEEechhhhhccccccccHHHHHHHH
Confidence 4344432 23322222222221 1122 12333 4899999998765441 1 2222
Q ss_pred HHHHHHH--hhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhC
Q 008161 364 LQAIKIS--KQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 364 ~~ll~~a--k~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g 420 (575)
.+.++.. ...+++|-|...+.. +.+.....+..+++++|.+=+|++|+..+..
T Consensus 252 ~~~i~~L~~~~~~i~iH~E~As~~----~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~ 306 (463)
T PRK03979 252 KEDIKLLKKKNKDIKIHVEFASIQ----NREIRKKIITYILPHVDSVGMDETEIANILN 306 (463)
T ss_pred HHHHHHHhhCCCCceEEEEecccc----CHHHHHHHHHhhccccccccCCHHHHHHHHH
Confidence 3333334 335788999875432 2344566777899999999999999998764
No 80
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=97.63 E-value=0.00086 Score=71.08 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=105.1
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcC-CEEEEcCCCCCc---cccChhHHHHHHHHhcccCeEEeCCHHHHHHh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFG-GIIFYDVNLPLP---LWQSGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G-~~Vv~D~~~~~~---l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L 418 (575)
.|+++-.+- +.++....++.+.+.. .+ ..+++||..... .....+...-+.+++++++||+.||.-|+-.|
T Consensus 92 ~C~VvKTGM--L~~~~I~~vi~q~l~~---~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~L 166 (523)
T KOG2598|consen 92 KCDVVKTGM--LPSPEIVKVIEQSLQK---FNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFIL 166 (523)
T ss_pred cccEEeecC--cCchHHHHHHHHHHHh---hcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHH
Confidence 366665542 2233334444444444 33 458999843221 11122344567788999999999999999999
Q ss_pred hCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcc----------------eEEEecCCCeeEecccCC
Q 008161 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK----------------VHYYTKEDDGAVLGTEDA 482 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G----------------a~v~~~~~~~~v~a~~~~ 482 (575)
++....+..... +.+ .....+.++.+.|++.|+|+.|.-. +.++..+.. +..++.+
T Consensus 167 l~~~~~~~~~i~----~v~--di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~--F~~f~~~ 238 (523)
T KOG2598|consen 167 LKKEKREISKIQ----SVF--DIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKE--FYIFKSP 238 (523)
T ss_pred HhhcccCCcccc----cHH--HHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecce--EEEeccc
Confidence 884322211110 000 0235567788889999999987432 222222221 2222222
Q ss_pred CCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 483 PLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 483 ~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
-+. .-.+-|.|-++.++++.-|+.| .++.+|++.|...--.+++
T Consensus 239 ~~~--t~~tHGtgCtLaSAIASnLA~g-------~sl~qAv~~ai~yvq~Ai~ 282 (523)
T KOG2598|consen 239 YLA--TKHTHGTGCTLASAIASNLARG-------YSLLQAVQGAIEYVQNAIA 282 (523)
T ss_pred ccc--cccccCccchHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHHHH
Confidence 222 5678899999999999999999 9999999998876654444
No 81
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.58 E-value=0.0039 Score=67.80 Aligned_cols=168 Identities=15% Similarity=0.076 Sum_probs=92.4
Q ss_pred ceEEecCChHHHHHHHHHHcCCCeEE-EEEeCCChHHHHHHHHHHhCCCccceE-----EEc-------CCCCCeEEEEE
Q 008161 245 KFIRSPGGCTGSAAIALARLGGKVAF-MGKLGDDEYGQAMLYYMNVNNVQTRSV-----RID-------AKRPTAVSQMK 311 (575)
Q Consensus 245 ~~~~~~GG~a~NvA~aLarLG~~v~l-vg~VG~D~~G~~i~~~L~~~GVdt~~v-----~~~-------~~~~T~~~~i~ 311 (575)
......||.+..+|..|+++|..+.+ .+..- ++...+.+...+|-.-.+ ... .....-+-+|+
T Consensus 85 ~~~~rmGGnAgimAn~la~lg~~~Vi~~~~~l----sk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~If 160 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSELGASRVVPNVAVP----SKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVF 160 (453)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEcCCCC----CHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEE
Confidence 44689999999999999999998644 33222 233344442222221110 000 01122233333
Q ss_pred EcCCCC--------------eEEEEecCCccccCC-ccccchhhh----ccCcEEEEecccccccc------hHHHHH--
Q 008161 312 IGKRGR--------------LRMTCVKPCAEDALT-KSEINIDVL----KEAKMFYFSTHSMLERN------MKSTTL-- 364 (575)
Q Consensus 312 vd~~Ge--------------r~~~~~~~ga~~~lt-~e~i~~~~l----~~ad~v~~sg~~l~~~~------~~e~~~-- 364 (575)
-...|. ++|++.....+..+. .+++ ...+ ..+|.++++|+.++.+. ..+.+.
T Consensus 161 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f-~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~ 239 (453)
T PRK14039 161 DFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAF-EQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDS 239 (453)
T ss_pred EeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHH-HHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHH
Confidence 333333 233333322222222 1222 1223 36899999998766221 122333
Q ss_pred -HHHHHH--hhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCC
Q 008161 365 -QAIKIS--KQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 365 -~ll~~a--k~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~ 421 (575)
+.++.. ...+++|-|...+.. +.+.....+..+++++|.+=+|++|+..+...
T Consensus 240 ~~~i~~l~~~~~~i~iH~E~As~~----~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~ 295 (453)
T PRK14039 240 LAQLKWWKSKNEKLRIHAELGHFA----SKEIANSVFLILAGIVDSIGMNEDELAMLANL 295 (453)
T ss_pred HHHHHHHHhcCCCceEEEEecCcc----cHHHHHHHHHHhhcccccccCCHHHHHHHHHH
Confidence 333333 224578999875432 24456677778999999999999999998765
No 82
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.57 E-value=0.0039 Score=67.66 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=90.9
Q ss_pred EecCChHHHHHHHHHHcCCCe--EEEEEeCCChHHHHHHHHHHhC-CCccc------eEEE------cCCCCCeEEEEEE
Q 008161 248 RSPGGCTGSAAIALARLGGKV--AFMGKLGDDEYGQAMLYYMNVN-NVQTR------SVRI------DAKRPTAVSQMKI 312 (575)
Q Consensus 248 ~~~GG~a~NvA~aLarLG~~v--~lvg~VG~D~~G~~i~~~L~~~-GVdt~------~v~~------~~~~~T~~~~i~v 312 (575)
...||.|.-+|..|+++|..+ .+++.++. .....|... +|-.- .+.. .++.++..-+|+-
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~-----~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I~E 160 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSK-----RQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPSKVNRIFE 160 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCCcCceeeccccCCceeeccchhccCCCCCCceEEEEE
Confidence 579999999999999999884 33444443 233444432 12111 0000 0112222333443
Q ss_pred cCCCCe--------------EEEEecCCccccCCc-ccc---chhhhccCcEEEEecccccccc---------hHHHHHH
Q 008161 313 GKRGRL--------------RMTCVKPCAEDALTK-SEI---NIDVLKEAKMFYFSTHSMLERN---------MKSTTLQ 365 (575)
Q Consensus 313 d~~Ger--------------~~~~~~~ga~~~lt~-e~i---~~~~l~~ad~v~~sg~~l~~~~---------~~e~~~~ 365 (575)
.+.|.+ ++++.....+..+.. +.+ ..+.-..+|.++++|+.++... ..+...+
T Consensus 161 y~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~ 240 (446)
T TIGR02045 161 FRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKE 240 (446)
T ss_pred eCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHHH
Confidence 333432 333322222222211 111 1233456899999998766432 1333444
Q ss_pred HHHHHh-hcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 366 AIKISK-QFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 366 ll~~ak-~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.++..+ ..+++|-|...+.. +.+.....+..+++++|.+=+|++|+..+.
T Consensus 241 ~i~~L~~~~~i~iH~E~As~~----~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll 291 (446)
T TIGR02045 241 DIELLKKNKDLKIHVEFASIQ----NREIRKKVVTNIFPHVDSVGMDEAEIANVL 291 (446)
T ss_pred HHHHHhhCCCCeEEEEecccc----cHHHHHHHHHhhccccccccCCHHHHHHHH
Confidence 455543 36788999875432 234456677789999999999999999887
No 83
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.36 E-value=0.0051 Score=67.51 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=83.9
Q ss_pred ecCChHHHHHHHHHHcCCCeEEEEE-eCCChHHHHHHHHHHhCCCccceEE------------EcCCCCCeEEEEEEcCC
Q 008161 249 SPGGCTGSAAIALARLGGKVAFMGK-LGDDEYGQAMLYYMNVNNVQTRSVR------------IDAKRPTAVSQMKIGKR 315 (575)
Q Consensus 249 ~~GG~a~NvA~aLarLG~~v~lvg~-VG~D~~G~~i~~~L~~~GVdt~~v~------------~~~~~~T~~~~i~vd~~ 315 (575)
..||.|.-+|..|+.++....+++. ++. +.+.+.| ..+|-+-.+. ...+...-+-+|+-...
T Consensus 93 r~GGnA~imAn~la~l~~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy~~ 167 (444)
T PF04587_consen 93 RMGGNAGIMANRLANLEGCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILEYKK 167 (444)
T ss_dssp EEESHHHHHHHHHCCTT-SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEEE-T
T ss_pred ccCchHHHHHHHHHhCCCCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEEcCC
Confidence 4999999999999988665554444 654 3345555 3333211000 00011233334443344
Q ss_pred C----------CeEEEEecCCccccCCc-cccc---hhhhccCcEEEEeccccccc-----chH----HHHHHHHHHHh-
Q 008161 316 G----------RLRMTCVKPCAEDALTK-SEIN---IDVLKEAKMFYFSTHSMLER-----NMK----STTLQAIKISK- 371 (575)
Q Consensus 316 G----------er~~~~~~~ga~~~lt~-e~i~---~~~l~~ad~v~~sg~~l~~~-----~~~----e~~~~ll~~ak- 371 (575)
| .++|++.....+..+.. +++. .+....+|.++++|+.++.. ... ..+.+.++..+
T Consensus 168 G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~ 247 (444)
T PF04587_consen 168 GEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKS 247 (444)
T ss_dssp TEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-
T ss_pred CCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccC
Confidence 4 23455444333333432 2221 12234599999999877653 122 22333334455
Q ss_pred hcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhC
Q 008161 372 QFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 372 ~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g 420 (575)
..+++|-|...+.. +.+..+..+..+++++|.|=+|++|+..++.
T Consensus 248 ~~~~~iH~E~As~~----d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 248 NPDIPIHLELASFA----DEELRKEILEKILPHVDSLGMNEQELANLLS 292 (444)
T ss_dssp HTT-EEEEE----S----SHHHHHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred CCCCceEEEecccc----CHHHHHHHHHHhhccccccccCHHHHHHHHH
Confidence 67899999975432 3345567777899999999999999998764
No 84
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.08 E-value=0.043 Score=55.40 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=87.8
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhc--ccCeEEeCCHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW--TLADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll--~~aDII~~N~~Ea 415 (575)
.+..+.++.++++--. +++...+.+..+++.+.+.|++++|||....- .....+...+++ .++++|+.|..|.
T Consensus 44 ~e~~~~a~al~iNiGT-l~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa----s~~R~~~~~~LL~~~~~~vIrGN~sEI 118 (246)
T PF02110_consen 44 EEFASIADALVINIGT-LTDERIEAMKKAAKAANELGIPVVLDPVGVGA----SKFRTEFALELLNNYKPTVIRGNASEI 118 (246)
T ss_dssp HHHHHCTSEEEEESTT-SSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT----BHHHHHHHHHHHCHS--SEEEEEHHHH
T ss_pred HHHHHHcCEEEEECCC-CCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC----cHHHHHHHHHHHHhCCCcEEEeCHHHH
Confidence 3556678888888322 23345778889999999999999999864321 122345566677 5689999999999
Q ss_pred HHhhCCCCCcc-ccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCc
Q 008161 416 EFLCGIKPTEE-FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSAS 494 (575)
Q Consensus 416 ~~L~g~~~~~~-~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGA 494 (575)
..|.|...... -|......+ ..+.++.+.++.-..|++| |+.-.+ .++.....+..- .+ ..-.-||+
T Consensus 119 ~aLag~~~~~kGVDs~~~~~~-----~~~~a~~lA~k~~~vVvvT-G~~D~I-sdg~~~~~i~nG--~~---~l~~itGt 186 (246)
T PF02110_consen 119 AALAGEDSKAKGVDSGDSDED-----AIEAAKQLAQKYNCVVVVT-GEVDYI-SDGNRVYRIPNG--SP---LLSKITGT 186 (246)
T ss_dssp HHHHTCCCCSCSSSSSCGSHH-----HHHHHHHHHHHTTSEEEEE-SSSEEE-EESSCEEEECSS--SG---GGGGSTTH
T ss_pred HHHhCcCCCCCCcCcCCcchH-----HHHHHHHHHHhcCCEEEEe-cCCcEE-ECCCeEEEeCCC--Ch---Hhcceecc
Confidence 99998653211 011100000 1355666665543455555 554322 233222222210 11 13456899
Q ss_pred hHHHHHHHHHHHHcC
Q 008161 495 GDGIVAGIMRMLTVQ 509 (575)
Q Consensus 495 GDaF~AGfl~~L~~g 509 (575)
|++..+-+.+.+...
T Consensus 187 GC~lgaliaaf~av~ 201 (246)
T PF02110_consen 187 GCMLGALIAAFLAVA 201 (246)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHhcc
Confidence 998877777777665
No 85
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.02 E-value=0.085 Score=57.57 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=88.0
Q ss_pred EEecCChHHHHHHHHHH-cCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEE------EcC-----CCCCeEEEEEEcC
Q 008161 247 IRSPGGCTGSAAIALAR-LGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVR------IDA-----KRPTAVSQMKIGK 314 (575)
Q Consensus 247 ~~~~GG~a~NvA~aLar-LG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~------~~~-----~~~T~~~~i~vd~ 314 (575)
....||.+.-+|..|+. .|.+| ++.++.. .+...+.+...+|-+-.+. ..+ +.+.-+-+|+-.+
T Consensus 106 ~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~Ey~ 181 (453)
T PRK14038 106 ELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLDGPIYVPTFEGGELKLVHPREFVGDEENCIHYIYEFP 181 (453)
T ss_pred eEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccCCCEEeccccCCcceeccchhcccCCCCccEEEEEeC
Confidence 57899999999999985 45665 6777643 1111222222222211000 000 1122333344334
Q ss_pred CCC----------eEEEEecCCccccCC-ccccc---hhhhccCcEEEEecccccccchH-HHH---HHHHHHHhhcCCE
Q 008161 315 RGR----------LRMTCVKPCAEDALT-KSEIN---IDVLKEAKMFYFSTHSMLERNMK-STT---LQAIKISKQFGGI 376 (575)
Q Consensus 315 ~Ge----------r~~~~~~~ga~~~lt-~e~i~---~~~l~~ad~v~~sg~~l~~~~~~-e~~---~~ll~~ak~~G~~ 376 (575)
.|. ++|++.....+..+. .+++. .+....+|.++++|+.++..... +.+ .+.+...+..+++
T Consensus 182 ~G~~~~~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~ 261 (453)
T PRK14038 182 RGFRVFDFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIP 261 (453)
T ss_pred CCCEEeeeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCce
Confidence 444 234433322222221 12221 13345799999999876654322 222 2233333345788
Q ss_pred EEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhC
Q 008161 377 IFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 377 Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g 420 (575)
|-|...+... ......+..+++++|-+-+|++|+..+..
T Consensus 262 iH~EfAs~~d-----~~~r~~i~~ilp~vDSlGmNE~ELa~ll~ 300 (453)
T PRK14038 262 AHLEFAFTPD-----ETVREEILGLLGKFYSVGLNEVELASIME 300 (453)
T ss_pred EEEEeeccch-----HHHHHHHHhhCccccccccCHHHHHHHHH
Confidence 8888753321 22344445799999999999999998875
No 86
>PRK10565 putative carbohydrate kinase; Provisional
Probab=96.99 E-value=0.023 Score=63.55 Aligned_cols=150 Identities=14% Similarity=0.029 Sum_probs=86.2
Q ss_pred hhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHh--cccCeEEeCCHHHHHH
Q 008161 340 VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQA--WTLADVIEVTKQELEF 417 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~l--l~~aDII~~N~~Ea~~ 417 (575)
.+..++.+.++.-...+ +....+++.+.+.++++++|+.. + ..+... .....||+||.-|+..
T Consensus 317 ~~~~~~a~viGpGlg~~----~~~~~~~~~~~~~~~P~VLDAda---L--------~ll~~~~~~~~~~VLTPh~gE~~r 381 (508)
T PRK10565 317 SLEWADVVVIGPGLGQQ----EWGKKALQKVENFRKPMLWDADA---L--------NLLAINPDKRHNRVITPHPGEAAR 381 (508)
T ss_pred HhhcCCEEEEeCCCCCC----HHHHHHHHHHHhcCCCEEEEchH---H--------HHHhhCccccCCeEECCCHHHHHH
Confidence 34668888887321111 22244556667778999999752 1 112110 1125799999999999
Q ss_pred hhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHH
Q 008161 418 LCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDG 497 (575)
Q Consensus 418 L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDa 497 (575)
|++........ ...+.++.+.++...+||+ -|..- +++++++..++... - -+ ..-++|.||.
T Consensus 382 L~~~~~~~v~~-----------~~~~~a~~~a~~~~~~vvl-KG~~~-iI~~~~~~~~~~~~--G-~~--~ma~~GsGDv 443 (508)
T PRK10565 382 LLGCSVAEIES-----------DRLLSARRLVKRYGGVVVL-KGAGT-VIAAEPDALAIIDV--G-NA--GMASGGMGDV 443 (508)
T ss_pred HhCCChhhhhh-----------hHHHHHHHHHHHhCCEEEE-eCCCc-EEEcCCceEEEECC--C-CC--CCCCCChHHH
Confidence 99854322110 0124455555544335555 45433 44443333333221 1 11 3456999999
Q ss_pred HHHHHHHHHHcCCCCCCCchhHHHHHHHHHHH
Q 008161 498 IVAGIMRMLTVQPHLITDKGYLVRTIKYAIDC 529 (575)
Q Consensus 498 F~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aa 529 (575)
+.|.+.+.|+++ .++.+|+..|+..
T Consensus 444 LaGiIaalla~g-------~~~~~Aa~~a~~l 468 (508)
T PRK10565 444 LSGIIGALLGQK-------LSPYDAACAGCVA 468 (508)
T ss_pred HHHHHHHHHHcC-------CCHHHHHHHHHHH
Confidence 998888888888 7888887777643
No 87
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=96.46 E-value=0.14 Score=51.62 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=86.6
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhccc--CeEEeCCHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL--ADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~--aDII~~N~~Ea 415 (575)
.+..+-++.++++--. ++....+.+..+++.+.+.|.|+++||....- .....+...++|.+ .++|..|..|.
T Consensus 50 ~e~~kia~AL~INIGT-L~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA----t~~R~~~~~~LL~~~~~~~IrGN~sEI 124 (265)
T COG2145 50 EEFAKIADALLINIGT-LSAERIQAMRAAIKAANESGKPVVLDPVGVGA----TKFRTKFALELLAEVKPAAIRGNASEI 124 (265)
T ss_pred HHHHHhccceEEeecc-CChHHHHHHHHHHHHHHhcCCCEEecCccCCc----hHHHHHHHHHHHHhcCCcEEeccHHHH
Confidence 3455667777777322 34456788899999999999999999864321 11224455666654 69999999999
Q ss_pred HHhhCCCCCcc-ccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCc
Q 008161 416 EFLCGIKPTEE-FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSAS 494 (575)
Q Consensus 416 ~~L~g~~~~~~-~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGA 494 (575)
..|.|...... -|...... ...+.++.+... ...+|+-.|+.-+ +.++.+...+..- .|. .-.-||+
T Consensus 125 ~~Lag~~~~~kGVDa~~~~~-----~~~~~a~~~A~~-~~~vvvvTG~vD~-Isdg~~~~~i~nG--~pl---l~~ItGt 192 (265)
T COG2145 125 AALAGEAGGGKGVDAGDGAA-----DAIEAAKKAAQK-YGTVVVVTGEVDY-ISDGTRVVVIHNG--SPL---LGKITGT 192 (265)
T ss_pred HHHhcccccccccccccchh-----hHHHHHHHHHHH-hCcEEEEECCeeE-EEcCCeEEEEECC--CcH---Hhhhhcc
Confidence 99987543211 01000000 012333333332 2344444465432 2222222222210 111 3456899
Q ss_pred hHHHHHHHHHHHHcC
Q 008161 495 GDGIVAGIMRMLTVQ 509 (575)
Q Consensus 495 GDaF~AGfl~~L~~g 509 (575)
|+...|-..+.++..
T Consensus 193 GCllgav~aaF~av~ 207 (265)
T COG2145 193 GCLLGAVVAAFLAVE 207 (265)
T ss_pred ccHHHHHHHHHHhcC
Confidence 998777766666665
No 88
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=96.16 E-value=0.13 Score=51.91 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=87.0
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHH---hcccCeEEeCCHHHH
Q 008161 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ---AWTLADVIEVTKQEL 415 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~---ll~~aDII~~N~~Ea 415 (575)
..+..+|.+.++.-...+ +....+++...+...++++|.. -++ .+.. .....-||+|+.-|+
T Consensus 63 ~~~~~~~av~iGPGlg~~----~~~~~~~~~~~~~~~p~VlDAD---aL~--------~l~~~~~~~~~~~IlTPH~gE~ 127 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRD----EETEELLEELLESDKPLVLDAD---ALN--------LLAENPKKRNAPVILTPHPGEF 127 (242)
T ss_dssp HHHCH-SEEEE-TT-SSS----HHHHHHHHHHHHHCSTEEEECH---HHH--------CHHHCCCCSSSCEEEE-BHHHH
T ss_pred hhhccCCEEEeecCCCCc----hhhHHHHHHHHhhcceEEEehH---HHH--------HHHhccccCCCCEEECCCHHHH
Confidence 456789999998321112 2223355555555678999953 222 1222 345578999999999
Q ss_pred HHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCch
Q 008161 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAG 495 (575)
..|++...... ....+.++++.+.. +.+||-.|..-.++ .+++..++... .. + -.-+-|.|
T Consensus 128 ~rL~~~~~~~~------------~~~~~~a~~~a~~~-~~~vvLKG~~t~I~-~p~~~~~~n~~--gn-~--~la~gGsG 188 (242)
T PF01256_consen 128 ARLLGKSVEIQ------------EDRIEAAREFAKEY-GAVVVLKGAVTIIA-SPGGRVYVNPT--GN-P--GLATGGSG 188 (242)
T ss_dssp HHHHTTTCHHC------------CSHHHHHHHHHHHH-TSEEEEESTSSEEE-EETSEEEEE-------G--GGSSTTHH
T ss_pred HHHhCCcccch------------hhHHHHHHHHHhhc-CcEEEEeCCCcEEE-ecCcceeEeCC--CC-C--CCCCCCcc
Confidence 99998764210 00235566655542 23444446654444 43333333221 11 1 45677999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHH
Q 008161 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGV 531 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA 531 (575)
|.+++-+..-++++ .++.+|+..|+..=+
T Consensus 189 DvLaGii~~llaq~-------~~~~~Aa~~av~lHg 217 (242)
T PF01256_consen 189 DVLAGIIAGLLAQG-------YDPFEAACLAVYLHG 217 (242)
T ss_dssp HHHHHHHHHHHHHT-------SSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcc-------CCHHHHHHHHHHHHH
Confidence 99988888888888 888888888765433
No 89
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=96.14 E-value=0.044 Score=60.02 Aligned_cols=167 Identities=16% Similarity=0.074 Sum_probs=93.6
Q ss_pred ceEEecCChHHHHHHHHHHcCC-CeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCC------
Q 008161 245 KFIRSPGGCTGSAAIALARLGG-KVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGR------ 317 (575)
Q Consensus 245 ~~~~~~GG~a~NvA~aLarLG~-~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ge------ 317 (575)
......||.|.-+|..|+.+|. +|.+.+.+..... ...+...+|-.-.+.. .....-+-+|+-.+.|.
T Consensus 100 ~~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~~----~~L~~d~~i~~p~~e~-~~~~d~IHlIlEy~~G~~~~~~~ 174 (445)
T cd01938 100 WDELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKLQ----AELFLDGPIVVPTFEN-LIEEDEIHLILEYPRGESWGDFV 174 (445)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEecCCCcHHH----HHhCCCCCeeeccccc-CCCCCccEEEEEcCCCCEecceE
Confidence 3458899999999999999998 7777777654322 2222222222111100 01123333444444443
Q ss_pred ----eEEEEecCCccccCCccccchhhhcc-CcEEEEecccccccch--HHHHHHHHHHHhh------cCCEEEEcCCCC
Q 008161 318 ----LRMTCVKPCAEDALTKSEINIDVLKE-AKMFYFSTHSMLERNM--KSTTLQAIKISKQ------FGGIIFYDVNLP 384 (575)
Q Consensus 318 ----r~~~~~~~ga~~~lt~e~i~~~~l~~-ad~v~~sg~~l~~~~~--~e~~~~ll~~ak~------~G~~Vv~D~~~~ 384 (575)
++|++.....+.....+++-....+. .|.++++|+-++.... .....+.++.+++ ..++|-|...+.
T Consensus 175 aPraNRfI~~~d~~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~ 254 (445)
T cd01938 175 APRANRFIFHDDDNNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAST 254 (445)
T ss_pred cCCCCeEEEecCCcchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEeccc
Confidence 34444332222211222221233333 8999999987665421 1223333333321 347888886533
Q ss_pred CccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhC
Q 008161 385 LPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 385 ~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g 420 (575)
. +.+.....+..+++++|-|=+|++|+..|..
T Consensus 255 ~----d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~ 286 (445)
T cd01938 255 V----DEELREEILHEVVPYVDSLGLNEQELANLLQ 286 (445)
T ss_pred c----cHHHHHHHHHHhcccccccccCHHHHHHHHH
Confidence 2 2345567777899999999999999998874
No 90
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.13 E-value=0.067 Score=53.71 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=98.3
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhc-cc-CeEEeCCHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW-TL-ADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll-~~-aDII~~N~~Ea 415 (575)
...|..-.+++++.--..++.....+..++++++.+++++++|. ..+|--. +....++ .+ .-|++||.-|+
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDa---DGL~Lv~----q~~e~l~~~~~~viLTPNvvEF 168 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDA---DGLWLVE----QLPERLIGGYPKVILTPNVVEF 168 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcC---CceEehh----hchhhhhccCceeeeCCcHHHH
Confidence 45677788888875333567778888999999999999999995 4667411 1111122 12 36889999999
Q ss_pred HHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCch
Q 008161 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAG 495 (575)
..|++...... + ....+..|...-....||--|..-.++.... ...+...+.- ..-.=|=|
T Consensus 169 kRLcd~~l~~~-d------------~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~-ev~~~s~eGs-----~kRcGGQG 229 (306)
T KOG3974|consen 169 KRLCDAELDKV-D------------SHSQMQHLAAELMNVTVVQKGESDKILSPDS-EVRVCSTEGS-----LKRCGGQG 229 (306)
T ss_pred HHHHHHhhccc-c------------chHHHHHHHHHhcCeEEEEecCCceeeCCCC-eeEEccCCCC-----ccccCCCc
Confidence 99998743111 0 2345555554445577777788776444333 2222211111 12334789
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
|..++.+...++-.. +.. .....++-.|..+++..+..
T Consensus 230 DiLaGsla~fl~w~k-~~~--~e~~~~~~~a~~a~s~~vr~ 267 (306)
T KOG3974|consen 230 DILAGSLATFLSWAK-LLS--GEQDSAAFLAAVAGSIMVRR 267 (306)
T ss_pred chhhhHHHHHHHHHH-hcc--CCccchhhhhhhhhHHHHHH
Confidence 998886655443210 000 12235555555555544443
No 91
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=93.79 E-value=1.9 Score=44.68 Aligned_cols=154 Identities=13% Similarity=0.014 Sum_probs=77.4
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc-cCeEEeCCHHHHHHhh
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELEFLC 419 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDII~~N~~Ea~~L~ 419 (575)
...+|.|.++.-...+....+.+.+++.... .++++|... ++. ......+.. ..-|++|+.-|+..|+
T Consensus 99 ~~~~~avviGpGlG~~~~~~~~~~~~l~~~~---~p~ViDADa---L~~-----la~~~~~~~~~~~VlTPH~gEf~rL~ 167 (284)
T COG0063 99 VERADAVVIGPGLGRDAEGQEALKELLSSDL---KPLVLDADA---LNL-----LAELPDLLDERKVVLTPHPGEFARLL 167 (284)
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEeCcH---HHH-----HHhCcccccCCcEEECCCHHHHHHhc
Confidence 4567888887322223223444444444332 789999642 110 001111221 2379999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHH
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIV 499 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~ 499 (575)
+.+..+.... ..+.++.+.++. ..+||-.|..-++ ..++...++-.. -.+ --=+=|.||+.+
T Consensus 168 g~~~~~~~~~-----------r~~~a~~~a~~~-~~vvVLKG~~tvI-~~~~g~~~~n~~----G~~-~ma~GGtGDvLa 229 (284)
T COG0063 168 GTEVDEIEVD-----------RLEAARELAAKY-GAVVVLKGAVTVI-ADPDGEVFVNPT----GNP-GMATGGTGDVLA 229 (284)
T ss_pred CCcccccccc-----------hHHHHHHHHHHc-CCEEEEeCCCCEE-EcCCCcEEEcCC----CCH-HhccCcchHHHH
Confidence 8644332110 135566666544 3444444654333 333323233211 110 223448999976
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHH
Q 008161 500 AGIMRMLTVQPHLITDKGYLVRTIKYAIDC 529 (575)
Q Consensus 500 AGfl~~L~~g~~~~~d~~sl~eAl~~A~aa 529 (575)
+-+.+-|+++ . .+..+|+..|+..
T Consensus 230 Gii~alLAq~-~-----~~~~~Aa~~g~~~ 253 (284)
T COG0063 230 GIIGALLAQG-P-----ADPLEAAAAGAWL 253 (284)
T ss_pred HHHHHHHhCC-C-----CCHHHHHHHHHHH
Confidence 6555555555 1 1455665555443
No 92
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=82.71 E-value=34 Score=36.81 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=53.3
Q ss_pred hhhccCcEEEEeccccccc----ch-----HHHHHHHHHHHhh-cCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEE
Q 008161 339 DVLKEAKMFYFSTHSMLER----NM-----KSTTLQAIKISKQ-FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVI 408 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~----~~-----~e~~~~ll~~ak~-~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII 408 (575)
+.....|...++|+..+-. .. .+...+-++..+. .++++-+...+.+ +....+..+..+++.++=+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~----d~~irk~i~~~il~~v~Sv 296 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQ----DRKIRKEILTNILSIVYSV 296 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccc----cHHHHHHHHHHHHhhhhhc
Confidence 3456789999999754321 11 2223334445555 6788888875433 2345567778899999999
Q ss_pred eCCHHHHHHhhCCC
Q 008161 409 EVTKQELEFLCGIK 422 (575)
Q Consensus 409 ~~N~~Ea~~L~g~~ 422 (575)
=+|+.|+..+....
T Consensus 297 GldE~ElA~vl~vl 310 (466)
T COG4809 297 GLDEVELANVLNVL 310 (466)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999876543
No 93
>PLN02967 kinase
Probab=82.68 E-value=1.5 Score=49.81 Aligned_cols=33 Identities=6% Similarity=-0.033 Sum_probs=22.6
Q ss_pred eEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCC
Q 008161 268 VAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAK 302 (575)
Q Consensus 268 v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~ 302 (575)
..|...+|.. +.-+.-.|.+.|+++.++-..++
T Consensus 236 ~~~~~~~GGa--~aNVAvaLARLG~~v~fIg~VGd 268 (581)
T PLN02967 236 EKFVRAPGGS--AGGVAIALASLGGKVAFMGKLGD 268 (581)
T ss_pred cceeeecCcH--HHHHHHHHHHCCCCEEEEEEeCC
Confidence 3455567764 44566778889999988876553
No 94
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=77.92 E-value=15 Score=36.29 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=46.0
Q ss_pred cEEEEecc-cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEE-----eCCHHHHHHh
Q 008161 345 KMFYFSTH-SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVI-----EVTKQELEFL 418 (575)
Q Consensus 345 d~v~~sg~-~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII-----~~N~~Ea~~L 418 (575)
.-|.++|- +++ ..+.+.++++.+++.|+.+.+|.|...+ .+.+..+++++|.+ .++.+....+
T Consensus 40 gGVt~SGGEPll---q~~fl~~l~~~~k~~gi~~~leTnG~~~--------~~~~~~l~~~~D~~l~DiK~~d~~~~~~~ 108 (213)
T PRK10076 40 GGVTLSGGEVLM---QAEFATRFLQRLRLWGVSCAIETAGDAP--------ASKLLPLAKLCDEVLFDLKIMDATQARDV 108 (213)
T ss_pred CEEEEeCchHHc---CHHHHHHHHHHHHHcCCCEEEECCCCCC--------HHHHHHHHHhcCEEEEeeccCCHHHHHHH
Confidence 46666653 332 4677899999999999999999886443 23445566665544 4566777788
Q ss_pred hCCC
Q 008161 419 CGIK 422 (575)
Q Consensus 419 ~g~~ 422 (575)
+|..
T Consensus 109 tG~~ 112 (213)
T PRK10076 109 VKMN 112 (213)
T ss_pred HCCC
Confidence 8854
No 95
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=71.72 E-value=7.7 Score=40.92 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=86.8
Q ss_pred CceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEe
Q 008161 244 EKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV 323 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~ 323 (575)
..+..+.||.+.-.|.-...-| .+.++|..|.-.....+-...+-.| -.+..+ -+-+|+-...|+.-=-+.
T Consensus 136 ~R~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~~R~~~-----~~I~~D---diHlILEYK~Gd~~G~~V 206 (478)
T KOG4184|consen 136 ERINWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKEIRLAG-----DEIPND---DIHLILEYKAGDKWGPYV 206 (478)
T ss_pred hhhhhhccCCchHHHHHHHhcc-ceeeecccccchhccccchhhhccc-----CcCcCC---ceEEEEEeccCCcccccc
Confidence 4556789999888888777666 7899999997643322222222222 111111 122333333343110112
Q ss_pred cCCccccCCccc-cc---------hhhhc--cCcEEEEecccccccchHHHHHHHHHHHhh------cCCEEEEcCCCCC
Q 008161 324 KPCAEDALTKSE-IN---------IDVLK--EAKMFYFSTHSMLERNMKSTTLQAIKISKQ------FGGIIFYDVNLPL 385 (575)
Q Consensus 324 ~~ga~~~lt~e~-i~---------~~~l~--~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~------~G~~Vv~D~~~~~ 385 (575)
.+.++..+...+ .+ .+.++ +.|+++++|..+++-...+.-.+-++..++ .|+++-|.+.+..
T Consensus 207 AP~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~ 286 (478)
T KOG4184|consen 207 APRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMT 286 (478)
T ss_pred cccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHH
Confidence 222222221111 11 22333 469999999866553333322222222221 4677777754221
Q ss_pred ccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCC
Q 008161 386 PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 386 ~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~ 421 (575)
......+.+..+++++|=+=+|++|+..|...
T Consensus 287 ----~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q~ 318 (478)
T KOG4184|consen 287 ----NRELMSSIVHQVLPYVDSLGLNEQELLFLTQS 318 (478)
T ss_pred ----HHHHHHHHHHHhhhhccccCCCHHHHHHHHHH
Confidence 12233456667899999999999999998753
No 96
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=66.58 E-value=9.2 Score=45.26 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=25.6
Q ss_pred ccccccccCCCc-----ccccccccccccCccccccccCCCCCCCcccccccccc
Q 008161 80 KQTRKKSETDAL-----DENSDLELSRDASDEESIVASSSKDTKKTPRMTRRKAA 129 (575)
Q Consensus 80 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (575)
|-||||-+ .++ .-|.||.-...... .+.+.++++.|..+.|++.||..
T Consensus 18 rsgrkk~~-~~p~~~~~p~~e~~rs~gr~sp-~~~stss~d~k~e~~~~~~kk~k 70 (982)
T PF03154_consen 18 RSGRKKQT-ASPDGRASPTNEDLRSSGRASP-SAASTSSSDSKAESSKKTNKKIK 70 (982)
T ss_pred hccCccCC-CCCcccCCCchhhhcccCCCCC-Ccccccccccccccccccccccc
Confidence 44888875 222 11334443333222 33444567777777777777743
No 97
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.30 E-value=4.5 Score=47.25 Aligned_cols=7 Identities=43% Similarity=0.676 Sum_probs=2.7
Q ss_pred cCCCccc
Q 008161 59 LSGSEAV 65 (575)
Q Consensus 59 ~~~~~~~ 65 (575)
|+.|+++
T Consensus 1276 P~g~eVI 1282 (1516)
T KOG1832|consen 1276 PSGNEVI 1282 (1516)
T ss_pred CCCceEE
Confidence 3334333
No 98
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=57.70 E-value=61 Score=35.68 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=66.3
Q ss_pred ceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHH---HHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEE
Q 008161 245 KFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYG---QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMT 321 (575)
Q Consensus 245 ~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G---~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~ 321 (575)
......+|.+++.+..++.++-.-.+|. ..+.|+ ..+...+...|+++.++..
T Consensus 78 ~av~~~SG~aAi~~al~all~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~---------------------- 133 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNP---------------------- 133 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECC----------------------
Confidence 4456778888887666665642222222 233455 4445557888887655410
Q ss_pred EecCCccccCCccccchhhhccCcEEEEecccccccc-hHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHH
Q 008161 322 CVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERN-MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ 400 (575)
Q Consensus 322 ~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~-~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ 400 (575)
.++++.+...+-.+.++|++.... ++. ..-.+.++.+.|+++|+++++|-.+..|+. ...
T Consensus 134 --------~~d~~~l~~~I~~~Tk~I~~e~pg--nP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~---------~~p 194 (432)
T PRK06702 134 --------NLTADEIVALANDKTKLVYAESLG--NPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL---------CQA 194 (432)
T ss_pred --------CCCHHHHHHhCCcCCeEEEEEcCC--CccccccCHHHHHHHHHHcCCEEEEECCCCchhh---------CCh
Confidence 011122211111234566665421 111 011267788889999999999976544431 222
Q ss_pred hcccCeEEeCCH
Q 008161 401 AWTLADVIEVTK 412 (575)
Q Consensus 401 ll~~aDII~~N~ 412 (575)
+-..+||++-+.
T Consensus 195 l~~GADIvv~S~ 206 (432)
T PRK06702 195 FEHGANIIVHST 206 (432)
T ss_pred hhcCCCEEEEcc
Confidence 334578776554
No 99
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=55.68 E-value=13 Score=41.59 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=24.0
Q ss_pred hccccccCCCcccccccCCCCccccccccccccccCCC
Q 008161 53 ASAQDELSGSEAVVKKRTPLTTKRATFKQTRKKSETDA 90 (575)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (575)
.+...-.+.||++||+. +|++ || ||||.++.+
T Consensus 47 ~~~~~~~~~~~~~~~~~----~~~~-~~-~~~~~~~~~ 78 (496)
T PLN02543 47 RSRPGRCSTNGAAVPES----PKPS-RR-GRKKKPTSS 78 (496)
T ss_pred cCcccccCCCcccCCCC----CCcc-cc-ccccCCCCC
Confidence 45556678899999997 7776 45 888886655
No 100
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=54.80 E-value=44 Score=32.05 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=48.5
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHH
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELE 416 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~ 416 (575)
+++++...|+.+ ..+.+..+.+.++++|+.|+.||.++. +..+..+.+.++.+-.+++...++.
T Consensus 22 d~~~I~T~Gs~i----~~~~i~~i~~~~~~rgVIIfTDpD~~G------ekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 22 DVDVIETNGSAL----KDETINLIKKAQKKQGVIILTDPDFPG------EKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CceEEEECCCcc----CHHHHHHHHHHhhcCCEEEEeCCCCch------HHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 588998888764 345566666666779999999987553 3456778888899999999998875
No 101
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=49.40 E-value=3.5e+02 Score=28.77 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccc--cchhhhcc
Q 008161 266 GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSE--INIDVLKE 343 (575)
Q Consensus 266 ~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~--i~~~~l~~ 343 (575)
.++.++|.-|. .|+.+++.|.+.+.....+..... ...-|+.-..+.... +...+ .+...+++
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~AS---------~rSaG~~~~~f~~~~----~~v~~~~~~~~~~~~ 66 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLAS---------ARSAGKKYIEFGGKS----IGVPEDAADEFVFSD 66 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEec---------ccccCCccccccCcc----ccCcccccccccccc
Confidence 46778887775 899999999987665543322111 112233212121111 11111 22345568
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCC
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~ 382 (575)
+|+++++. ..+...++...+.+.|+ +++|..
T Consensus 67 ~Divf~~a-------g~~~s~~~~p~~~~~G~-~VIdns 97 (334)
T COG0136 67 VDIVFFAA-------GGSVSKEVEPKAAEAGC-VVIDNS 97 (334)
T ss_pred CCEEEEeC-------chHHHHHHHHHHHHcCC-EEEeCC
Confidence 99998873 22344677888888884 667754
No 102
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=47.72 E-value=43 Score=29.59 Aligned_cols=96 Identities=11% Similarity=0.161 Sum_probs=50.4
Q ss_pred EEEeC-CChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecC--CccccCCccccchhhhccCcEE
Q 008161 271 MGKLG-DDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKP--CAEDALTKSEINIDVLKEAKMF 347 (575)
Q Consensus 271 vg~VG-~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~--ga~~~lt~e~i~~~~l~~ad~v 347 (575)
++.|| ....|..+++.|.+ .-+...+.+..... ..|.. +....+ .....+..++.+...+.++|++
T Consensus 2 V~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~~~---------~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 70 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAE-HPDFELVALVSSSR---------SAGKP-LSEVFPHPKGFEDLSVEDADPEELSDVDVV 70 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHH-TSTEEEEEEEESTT---------TTTSB-HHHTTGGGTTTEEEBEEETSGHHHTTESEE
T ss_pred EEEECCCCHHHHHHHHHHhc-CCCccEEEeeeecc---------ccCCe-eehhccccccccceeEeecchhHhhcCCEE
Confidence 45566 66789999998887 33333322211111 01221 111111 0011222233345667899999
Q ss_pred EEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC
Q 008161 348 YFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL 385 (575)
Q Consensus 348 ~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~ 385 (575)
+++. +.....++...+.+.|+ .++|.+...
T Consensus 71 f~a~-------~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 71 FLAL-------PHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp EE-S-------CHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred EecC-------chhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 8873 34455667777777887 788987543
No 103
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=46.15 E-value=1.8e+02 Score=29.61 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=47.3
Q ss_pred cCcEEEEecc-cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEe-----CCHHHHH
Q 008161 343 EAKMFYFSTH-SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIE-----VTKQELE 416 (575)
Q Consensus 343 ~ad~v~~sg~-~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~-----~N~~Ea~ 416 (575)
.++-|.++|- +. ...+.+.++++.+++.|+.+++|.|...+ .+.+..+++.+|.+. ++.+-..
T Consensus 83 ~~~gvt~SGGEP~---~q~e~~~~~~~~ake~Gl~~~l~TnG~~~--------~~~~~~l~~~~D~v~~DlK~~~~~~y~ 151 (260)
T COG1180 83 SGGGVTFSGGEPT---LQAEFALDLLRAAKERGLHVALDTNGFLP--------PEALEELLPLLDAVLLDLKAFDDELYR 151 (260)
T ss_pred CCCEEEEECCcch---hhHHHHHHHHHHHHHCCCcEEEEcCCCCC--------HHHHHHHHhhcCeEEEeeccCChHHHH
Confidence 5677777763 22 35788999999999999999999885432 233345555555543 4444477
Q ss_pred HhhCCCC
Q 008161 417 FLCGIKP 423 (575)
Q Consensus 417 ~L~g~~~ 423 (575)
.++|...
T Consensus 152 ~~tg~~~ 158 (260)
T COG1180 152 KLTGADN 158 (260)
T ss_pred HHhCCCc
Confidence 7777653
No 104
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=45.59 E-value=8.1 Score=44.29 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=15.4
Q ss_pred ccchhhhhhhhhhcccccccccC
Q 008161 133 TGMEEEKTEKKVRRRRKTTKKIG 155 (575)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~ 155 (575)
+.+.+..-.+|.|+++|.+++.|
T Consensus 185 ~~~~~~~~~~ke~k~~~~~~eqe 207 (822)
T KOG2141|consen 185 SDGSKLLLDFKERKKKKEKEEQE 207 (822)
T ss_pred hhHHHhhhhhhHHHHHHhhhhhh
Confidence 34555566677788888777665
No 105
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=43.05 E-value=1.2e+02 Score=30.96 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=44.9
Q ss_pred hhhhccCcEEEEecccccccch----HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNM----KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~----~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~ 412 (575)
...+..+|+++++|-.++.... .-.+..++..|+..|+++++=.....|+-. ...+.....++..+|+|.+=+
T Consensus 59 ~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~--~~~r~~~~~~l~~~~~i~vRD 135 (298)
T TIGR03609 59 LRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRR--RLSRWLVRRVLRGCRAISVRD 135 (298)
T ss_pred HHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcCC--HHHHHHHHHHHccCCEEEEeC
Confidence 4567889999988755543211 222334567777788876665443334321 223456677889999998733
No 106
>PRK05967 cystathionine beta-lyase; Provisional
Probab=43.03 E-value=1.9e+02 Score=31.39 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=29.9
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCcc
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPL 387 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l 387 (575)
+.++|++...... -.....+.++.+.|+++|+.+++|-.+..++
T Consensus 149 ~TklV~lesPsNP-~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~ 192 (395)
T PRK05967 149 NTKVVHTEAPGSN-TFEMQDIPAIAEAAHRHGAIVMMDNTWATPL 192 (395)
T ss_pred CceEEEEECCCCC-CCcHHHHHHHHHHHHHhCCEEEEECCccCce
Confidence 4567877753210 1234567888899999999999997655443
No 107
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.81 E-value=15 Score=35.33 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=10.4
Q ss_pred ceeceeEeccccccc
Q 008161 23 SSVNLMHAQNFRLHS 37 (575)
Q Consensus 23 ~~~~~~~~~~~~~~~ 37 (575)
+.++-.||++|||+.
T Consensus 80 ~pL~~~~L~gFrL~p 94 (178)
T PF10278_consen 80 TPLSSSQLAGFRLHP 94 (178)
T ss_pred CcCCHHHHhhccCCC
Confidence 345556778899884
No 108
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=41.48 E-value=55 Score=34.94 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=34.2
Q ss_pred ccccccccccccccccCcccceeceeEecccccc-------ccchhhHHhhhhhhhh
Q 008161 3 SLSFAHFLSLPRCHSNWQYCSSVNLMHAQNFRLH-------SAKWHLVATSRKKIVQ 52 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 52 (575)
.|||-.|-+.|--.-..--.+-..+|||+-||+. +-..+-.-.+|||-.+
T Consensus 141 GLSFVk~H~~~~~~~~~~~~~~~~V~q~G~FklrEE~~~s~t~~~~~~F~S~~~qT~ 197 (508)
T KOG3226|consen 141 GLSFVKVHVVAAAAPKVKSLVPQGVMQFGTFKLREESPDSETDNQVNRFHSWKKQTQ 197 (508)
T ss_pred ceeeEEEecccccccccccccccceeeeeeEeeeccCCcccccchHHhhhhhhhccC
Confidence 4788888887776666666788899999999984 2234444455655433
No 109
>PRK09028 cystathionine beta-lyase; Provisional
Probab=41.42 E-value=1.6e+02 Score=31.93 Aligned_cols=43 Identities=9% Similarity=0.220 Sum_probs=29.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++....... .....+.++++.|+++|+.+++|-.+..+
T Consensus 146 ~TklV~lespsNPt-g~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 146 NTKVLFLESPGSIT-MEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred CceEEEEECCCCCC-CcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 46778877532111 22456788889999999999999765544
No 110
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=41.36 E-value=1.2e+02 Score=32.67 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=63.6
Q ss_pred HHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc
Q 008161 258 AIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN 337 (575)
Q Consensus 258 A~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~ 337 (575)
..+|++-|.++.--+.+=...+ .++...|+..||+++++...+ +-.+. -.+++
T Consensus 94 i~~la~aGD~iVss~~LYGGT~-~lf~~tl~~~Gi~v~fvd~~d--~~~~~-~aI~~----------------------- 146 (426)
T COG2873 94 ILNLAGAGDNIVSSSKLYGGTY-NLFSHTLKRLGIEVRFVDPDD--PENFE-AAIDE----------------------- 146 (426)
T ss_pred HHHhccCCCeeEeeccccCchH-HHHHHHHHhcCcEEEEeCCCC--HHHHH-HHhCc-----------------------
Confidence 3455666777766665544434 467778899999987763221 11111 01111
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~ 412 (575)
+.+.|++..+.... ...-.+..+.+.|+++|+++++|-....+. +++.+-..+|||.=+.
T Consensus 147 -----nTkavf~EtigNP~-~~v~Die~ia~iAh~~gvpliVDNT~atpy---------l~rP~~hGADIVvHS~ 206 (426)
T COG2873 147 -----NTKAVFAETIGNPG-LDVLDIEAIAEIAHRHGVPLIVDNTFATPY---------LCRPIEHGADIVVHSA 206 (426)
T ss_pred -----ccceEEEEeccCCC-ccccCHHHHHHHHHHcCCcEEEecCCCcce---------ecchhhcCCCEEEEee
Confidence 22333333221100 111234567788999999999998766553 3455556789987654
No 111
>PRK15447 putative protease; Provisional
Probab=37.74 E-value=4.1e+02 Score=27.59 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=44.5
Q ss_pred cCcEEEEecc--cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhccc-Ce-EEeCCHHHHHHh
Q 008161 343 EAKMFYFSTH--SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL-AD-VIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~--~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~-aD-II~~N~~Ea~~L 418 (575)
.+|.||++.- ++..+...+.+.++++.++++|+.|++-.+.. .....+. ..+.+++.. .| |+.-|-..+..+
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i---~~~~~e~-~~l~~~l~~~~~~v~v~d~g~l~~~ 103 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLAL---VEAPSEL-KELRRLVENGEFLVEANDLGAVRLL 103 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc---ccCHHHH-HHHHHHHhcCCCEEEEeCHHHHHHH
Confidence 7999999852 22234567889999999999999999864321 1111122 223333333 44 555577776655
Q ss_pred h
Q 008161 419 C 419 (575)
Q Consensus 419 ~ 419 (575)
-
T Consensus 104 ~ 104 (301)
T PRK15447 104 A 104 (301)
T ss_pred H
Confidence 4
No 112
>PRK15452 putative protease; Provisional
Probab=36.84 E-value=2.1e+02 Score=31.71 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=32.1
Q ss_pred hhhccCcEEEEecc--ccc---ccchHHHHHHHHHHHhhcCCEEEEcCC
Q 008161 339 DVLKEAKMFYFSTH--SML---ERNMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 339 ~~l~~ad~v~~sg~--~l~---~~~~~e~~~~ll~~ak~~G~~Vv~D~~ 382 (575)
.+-.+||.||+++- .+. .+...+.+.++++.|+++|++|++-++
T Consensus 19 Ai~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n 67 (443)
T PRK15452 19 AFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVN 67 (443)
T ss_pred HHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 34468999999762 211 223457788999999999999998866
No 113
>PRK05968 hypothetical protein; Provisional
Probab=36.59 E-value=3.7e+02 Score=28.84 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=27.8
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
.+.++|++...... ......+.++.+.|+++|+++++|-.+.
T Consensus 146 ~~tklV~ie~pt~~-~~~~~dl~~i~~la~~~gi~vivD~a~a 187 (389)
T PRK05968 146 PGAKLLYLESPTSW-VFELQDVAALAALAKRHGVVTMIDNSWA 187 (389)
T ss_pred ccCCEEEEECCCCC-CCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 44567777642211 1234567788888999999999997543
No 114
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=36.00 E-value=1.9e+02 Score=31.09 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=17.2
Q ss_pred HHHHHHHHhhcCCEEEEcCCCC
Q 008161 363 TLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
+.++++.|+++|++|++|-.+.
T Consensus 165 l~~I~~la~~~gi~livD~t~~ 186 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNCFC 186 (390)
T ss_pred HHHHHHHHHHcCCEEEEECCCc
Confidence 4677788888999999997543
No 115
>PRK07050 cystathionine beta-lyase; Provisional
Probab=35.47 E-value=3e+02 Score=29.71 Aligned_cols=108 Identities=9% Similarity=0.149 Sum_probs=57.7
Q ss_pred CCceEEecCChHHHHHHHHHHcCC-CeEEEEEeCCChHHH---HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCe
Q 008161 243 PEKFIRSPGGCTGSAAIALARLGG-KVAFMGKLGDDEYGQ---AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRL 318 (575)
Q Consensus 243 ~~~~~~~~GG~a~NvA~aLarLG~-~v~lvg~VG~D~~G~---~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger 318 (575)
........||.+++.+...+.++- ...++.. ..|+. .+...+...|+.+.++. .. +.
T Consensus 80 ~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~---~~y~~~~~~~~~~~~~~Gi~v~~vd--~~------------~~-- 140 (394)
T PRK07050 80 GRHALLQPSGLAAISLVYFGLVKAGDDVLIPD---NAYGPNRDHGEWLARDFGITVRFYD--PL------------IG-- 140 (394)
T ss_pred CCeEEEeccHHHHHHHHHHHHhCCCCEEEEec---CCcccHHHHHHHHHHhcCeEEEEEC--CC------------CH--
Confidence 355667789998887776665532 2233332 22332 23345566777655431 10 00
Q ss_pred EEEEecCCccccCCccccchhhh-ccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008161 319 RMTCVKPCAEDALTKSEINIDVL-KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 319 ~~~~~~~ga~~~lt~e~i~~~~l-~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.+. ..+ .+.++|++....... .....+.++.+.|+++|+.+++|-.+..+
T Consensus 141 ---------------~~l~-~~i~~~tklV~le~p~Np~-~~~~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 141 ---------------AGIA-DLIQPNTRLIWLEAPGSVT-MEVPDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred ---------------HHHH-HhcCCCCeEEEEECCCCCC-ccHhhHHHHHHHHHHcCCEEEEECCcccc
Confidence 0010 111 234667665421111 13456778888899999999999765443
No 116
>PRK08114 cystathionine beta-lyase; Provisional
Probab=33.92 E-value=2.2e+02 Score=31.00 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=56.3
Q ss_pred CceEEecCChHHHHHHHHHHcCC-CeEEEEEeCCChHH---HHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeE
Q 008161 244 EKFIRSPGGCTGSAAIALARLGG-KVAFMGKLGDDEYG---QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLR 319 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG~-~v~lvg~VG~D~~G---~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~ 319 (575)
......+.|.++..+..++-|.. ...+++ ++.+| .++...|++.||.+.++. .. + .
T Consensus 78 ~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~---~~~Yg~t~~l~~~~l~~~Gi~v~~vd--~~----------d--~--- 137 (395)
T PRK08114 78 AGCALYPCGAAAVANAILAFVEQGDHVLMT---GTAYEPTQDFCSKILSKLGVTTTWFD--PL----------I--G--- 137 (395)
T ss_pred CeEEEEhHHHHHHHHHHHHHcCCCCEEEEe---CCCcHHHHHHHHHHHHhcCcEEEEEC--CC----------C--H---
Confidence 34556677888877766666642 223333 33343 334456788888765532 10 0 0
Q ss_pred EEEecCCccccCCccccchhhh-ccCcEEEEecccccccchHHHHHHHHHHHhhc--CCEEEEcCCCCCcc
Q 008161 320 MTCVKPCAEDALTKSEINIDVL-KEAKMFYFSTHSMLERNMKSTTLQAIKISKQF--GGIIFYDVNLPLPL 387 (575)
Q Consensus 320 ~~~~~~ga~~~lt~e~i~~~~l-~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~--G~~Vv~D~~~~~~l 387 (575)
+.+ ...+ .+.++|++....... .....+.++.+.++++ |+.+++|-....++
T Consensus 138 --------------~~l-~~~l~~~TrlV~~EtpsNp~-~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~ 192 (395)
T PRK08114 138 --------------ADI-AKLIQPNTKVVFLESPGSIT-MEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV 192 (395)
T ss_pred --------------HHH-HHhcCCCceEEEEECCCCCC-CEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 001 0111 134567776532111 0112345677777876 49999997655544
No 117
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=32.80 E-value=15 Score=31.62 Aligned_cols=7 Identities=57% Similarity=0.643 Sum_probs=2.0
Q ss_pred EEEEccc
Q 008161 207 VCCFGSA 213 (575)
Q Consensus 207 VlviG~~ 213 (575)
+..+|.+
T Consensus 43 ~p~fgea 49 (101)
T PF09026_consen 43 VPEFGEA 49 (101)
T ss_dssp ---HHHH
T ss_pred chhHHHH
Confidence 4455543
No 118
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=32.72 E-value=2.4e+02 Score=30.34 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=24.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|++........ ....+.++.+.++++|+++++|-.+.
T Consensus 144 ~tklV~le~p~Np~G-~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 144 NTKIVYFETPANPTM-KLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CCeEEEEECCCCCCC-cccCHHHHHHHHHHcCCEEEEECCCc
Confidence 456777664311110 11125667788889999999997644
No 119
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=32.28 E-value=3.7e+02 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=28.9
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++....... .....+.++.+.|+++|+.+++|-.+..+
T Consensus 135 ~tklV~lesp~Np~-g~~~dl~~I~~la~~~g~~livD~t~a~g 177 (377)
T TIGR01324 135 NTKVLFLEAPSSIT-FEIQDIPAIAKAARNPGIVIMIDNTWAAG 177 (377)
T ss_pred CceEEEEECCCCCC-CcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 45677776532211 23456778889999999999999765443
No 120
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=31.83 E-value=1.9e+02 Score=31.45 Aligned_cols=107 Identities=19% Similarity=0.322 Sum_probs=60.0
Q ss_pred CceEEecCChHHHHHHHHHHc--CCCeEEEEEeCCChHH---HHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCe
Q 008161 244 EKFIRSPGGCTGSAAIALARL--GGKVAFMGKLGDDEYG---QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRL 318 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarL--G~~v~lvg~VG~D~~G---~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger 318 (575)
......+-|.++-.+..++-+ |.++.+... .|| +++...+++.||++.++ ++. +. .
T Consensus 79 ~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~----~YG~t~~~~~~~l~~~gi~~~~~--d~~--~~----------~- 139 (396)
T COG0626 79 EDAFAFSSGMAAISTALLALLKAGDHVLLPDD----LYGGTYRLFEKILQKFGVEVTFV--DPG--DD----------E- 139 (396)
T ss_pred CcEEEecCcHHHHHHHHHHhcCCCCEEEecCC----ccchHHHHHHHHHHhcCeEEEEE--CCC--Ch----------H-
Confidence 455677788887777666666 444443332 233 45666777788876654 111 00 0
Q ss_pred EEEEecCCccccCCccccchhhh-ccCcEEEEecc--cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccc
Q 008161 319 RMTCVKPCAEDALTKSEINIDVL-KEAKMFYFSTH--SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLW 388 (575)
Q Consensus 319 ~~~~~~~ga~~~lt~e~i~~~~l-~~ad~v~~sg~--~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~ 388 (575)
.+..... .+.++|++... +++. ...+..+.+.|+++|+.+++|-.+..|+.
T Consensus 140 ----------------~~~~~~~~~~tk~v~lEtPsNP~l~---v~DI~~i~~~A~~~g~~vvVDNTfatP~~ 193 (396)
T COG0626 140 ----------------ALEAAIKEPNTKLVFLETPSNPLLE---VPDIPAIARLAKAYGALVVVDNTFATPVL 193 (396)
T ss_pred ----------------HHHHHhcccCceEEEEeCCCCcccc---cccHHHHHHHHHhcCCEEEEECCcccccc
Confidence 0000111 24556666542 1111 22356778888999999999987666654
No 121
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=3.2e+02 Score=29.23 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=50.6
Q ss_pred ccCcEEEEecc--ccc---ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc-cCeEEeCCHHHH
Q 008161 342 KEAKMFYFSTH--SML---ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQEL 415 (575)
Q Consensus 342 ~~ad~v~~sg~--~l~---~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDII~~N~~Ea 415 (575)
..+|.||++.. .+. .....+.+.++++.|+++|+++.+-.|..... ...+.+...+..+.. .+|-|+++.--+
T Consensus 25 ~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~-~~~~~~~~~l~~l~e~GvDaviv~Dpg~ 103 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHN-DELETLERYLDRLVELGVDAVIVADPGL 103 (347)
T ss_pred cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEecccccc-chhhHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 46899999853 111 12456778999999999999877776633211 111223444555443 489999988877
Q ss_pred HHhhCC
Q 008161 416 EFLCGI 421 (575)
Q Consensus 416 ~~L~g~ 421 (575)
-.++..
T Consensus 104 i~l~~e 109 (347)
T COG0826 104 IMLARE 109 (347)
T ss_pred HHHHHH
Confidence 766653
No 122
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=30.56 E-value=3.2e+02 Score=27.91 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=39.3
Q ss_pred cEEEEec-ccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEe-----CCHHHHHHh
Q 008161 345 KMFYFST-HSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIE-----VTKQELEFL 418 (575)
Q Consensus 345 d~v~~sg-~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~-----~N~~Ea~~L 418 (575)
..|.++| -+++ ..+.+.++++.+++.|..+.++.|.... .+.+..+++..|++. .+.+....+
T Consensus 127 ~~V~~sGGEPll---~~~~l~~l~~~~k~~g~~~~i~TnG~~~--------~~~~~~ll~~~d~~~isl~~~~~~~~~~~ 195 (295)
T TIGR02494 127 GGVTLSGGEPLL---QPEFALALLQACHERGIHTAVETSGFTP--------WETIEKVLPYVDLFLFDIKHLDDERHKEV 195 (295)
T ss_pred CcEEeeCcchhc---hHHHHHHHHHHHHHcCCcEeeeCCCCCC--------HHHHHHHHhhCCEEEEeeccCChHHHHHH
Confidence 3455665 3333 2455678999999999989998774321 233445566666654 344445555
Q ss_pred hCC
Q 008161 419 CGI 421 (575)
Q Consensus 419 ~g~ 421 (575)
.|.
T Consensus 196 ~g~ 198 (295)
T TIGR02494 196 TGV 198 (295)
T ss_pred hCC
Confidence 553
No 123
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=30.24 E-value=3.7e+02 Score=29.12 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=25.9
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++........ ....+.++.+.|+++|+.+++|-.+..+
T Consensus 155 ~tklV~~esp~Nptg-~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 155 PTQAVFFETPSNPMQ-SLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred CceEEEEECCCCCCC-eecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 356777654221110 1113567778888999999999765544
No 124
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.06 E-value=2.2e+02 Score=31.24 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCH
Q 008161 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~ 412 (575)
+.++.+.|+++|+++++|.....+... ..+--.+|++..+.
T Consensus 168 i~~I~~la~~~gi~livD~t~a~~~~~---------~pl~~GaD~vv~S~ 208 (433)
T PRK08134 168 IPTVAAIAHEAGVPLLVDSTFTTPYLL---------RPFEHGADLVYHSA 208 (433)
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccC---------CchhcCCCEEEecc
Confidence 567788899999999999765444321 12223588887773
No 125
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=30.02 E-value=1.7e+02 Score=27.05 Aligned_cols=58 Identities=16% Similarity=0.010 Sum_probs=42.2
Q ss_pred cEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHH
Q 008161 345 KMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQEL 415 (575)
Q Consensus 345 d~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea 415 (575)
..|.|+|-- ...+.+.++++.+++.|..+.++.++.. .+...++++++|+++...-..
T Consensus 63 ~gVt~SGGE----l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~---------~~~~~~il~~iD~l~~g~y~~ 120 (147)
T TIGR02826 63 SCVLFLGGE----WNREALLSLLKIFKEKGLKTCLYTGLEP---------KDIPLELVQHLDYLKTGRWIH 120 (147)
T ss_pred CEEEEechh----cCHHHHHHHHHHHHHCCCCEEEECCCCC---------HHHHHHHHHhCCEEEEChHHH
Confidence 467777632 4567888999999999999999976332 234557788899999887533
No 126
>PF05077 DUF678: Protein of unknown function (DUF678); InterPro: IPR007769 This family contains poxvirus proteins belonging to the A19 family. The proteins are of unknown function.
Probab=29.69 E-value=23 Score=28.77 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=7.8
Q ss_pred hhhccccccccc
Q 008161 143 KVRRRRKTTKKI 154 (575)
Q Consensus 143 ~~~~~~~~~~~~ 154 (575)
++|||||++...
T Consensus 7 ~Krrkrk~~t~v 18 (74)
T PF05077_consen 7 KKRRKRKPKTTV 18 (74)
T ss_pred chhcccCCCcee
Confidence 455777777665
No 127
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=28.89 E-value=4e+02 Score=30.24 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCeEEEEEeCCC-hHHHHHHHHHHhCCCcc
Q 008161 257 AAIALARLGGKVAFMGKLGDD-EYGQAMLYYMNVNNVQT 294 (575)
Q Consensus 257 vA~aLarLG~~v~lvg~VG~D-~~G~~i~~~L~~~GVdt 294 (575)
+|..+|..|.+|...|.-+-. ..|. .+.|...||++
T Consensus 293 aa~v~A~~Gv~V~kHG~r~~ss~~Gs--advlealGi~~ 329 (531)
T PRK09522 293 SAFVAAACGLKVAKHGNRSVSSKSGS--SDLLAAFGINL 329 (531)
T ss_pred HHHHHHhCCCcEEEeCCCCCCCCccH--HHHHHHcCCCC
Confidence 578888999999999865532 2332 56677777765
No 128
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=28.80 E-value=2.9e+02 Score=29.27 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=26.0
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++........ ....+.++.+.++++|+.+++|-.+..+
T Consensus 125 ~~~~v~~e~~~np~g-~~~dl~~i~~la~~~g~~livD~t~~~~ 167 (369)
T cd00614 125 ETKLVYVESPTNPTL-KVVDIEAIAELAHEHGALLVVDNTFATP 167 (369)
T ss_pred CCeEEEEECCCCCCC-eecCHHHHHHHHHHcCCEEEEECCCcch
Confidence 456777664321111 1112567788889999999999765433
No 129
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.79 E-value=3e+02 Score=30.21 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=24.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|++....... .....+.++.+.|+++|++|++|-...
T Consensus 149 ~tklV~l~sp~NPt-G~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 149 KTKALFAETIGNPK-GDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred CCeEEEEECCCCCC-CcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 45677776321100 011124577788899999999997543
No 130
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.46 E-value=3.4e+02 Score=29.93 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCH
Q 008161 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~ 412 (575)
+.++.+.|+++|+++++|.....+... ..+--.+|++..+-
T Consensus 174 i~~I~~la~~~gi~livD~t~a~g~~~---------~p~~~GaDivv~S~ 214 (437)
T PRK05613 174 IPAVAEVAHRNQVPLIVDNTIATAALV---------RPLELGADVVVASL 214 (437)
T ss_pred HHHHHHHHHHcCCeEEEECCCcccccc---------ChHHhCCCEEEeec
Confidence 567778889999999999764332211 11112578887765
No 131
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=27.69 E-value=3.1e+02 Score=29.69 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=25.4
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++........ ..-.+.++.+.|+++|+.+++|-.+..+
T Consensus 149 ~tklV~ie~p~NPtg-~v~dl~~I~~la~~~gi~livD~t~a~~ 191 (398)
T PRK08249 149 GCDLLYLETPTNPTL-KIVDIERLAAAAKKVGALVVVDNTFATP 191 (398)
T ss_pred CCeEEEEECCCCCCC-ccCCHHHHHHHHHHcCCEEEEECCcCcc
Confidence 356777654211000 0112456778889999999999765543
No 132
>PHA00438 hypothetical protein
Probab=27.40 E-value=45 Score=27.50 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=15.0
Q ss_pred cCchHHHHHHHHHHHHc
Q 008161 492 SASGDGIVAGIMRMLTV 508 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~ 508 (575)
.|..++|+|||++||.-
T Consensus 47 ~G~SE~~IaGfl~Gl~y 63 (81)
T PHA00438 47 AGYSEAFIAGFLAGLQY 63 (81)
T ss_pred cCCcHHHHHHHHHHHHH
Confidence 49999999999999853
No 133
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=26.36 E-value=3.6e+02 Score=28.85 Aligned_cols=41 Identities=5% Similarity=0.080 Sum_probs=25.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|++........ ....+.++.+.|+++|+.+++|-...
T Consensus 131 ~tklv~le~psnptg-~v~dl~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 131 KTKLVLLESPTNPLQ-KIVDIRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred CceEEEEECCCCCCC-eeecHHHHHHHHHHcCCEEEEECCCc
Confidence 456777765321111 11135677888899999999997543
No 134
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=25.66 E-value=45 Score=39.96 Aligned_cols=15 Identities=13% Similarity=-0.066 Sum_probs=9.8
Q ss_pred CCCCHHHHHhhhCCC
Q 008161 542 GYPPKGGMEEEVEPD 556 (575)
Q Consensus 542 ~~pt~eeve~~l~~~ 556 (575)
++++++-|+.||+-.
T Consensus 1151 SL~SLdLIe~fLe~v 1165 (1567)
T KOG1015|consen 1151 SLISLDLIEDFLELV 1165 (1567)
T ss_pred ccchhHHHHHHHHhh
Confidence 567777777776543
No 135
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.62 E-value=1.3e+02 Score=25.45 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=30.5
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcC
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDV 381 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~ 381 (575)
...++.+|+|++- .+-.....+..+-+.|++.++++++--
T Consensus 43 ~~~i~~aD~VIv~----t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 43 PSKIKKADLVIVF----TDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHhcCCCCEEEEE----eCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 3556788988775 233567788888899999999998874
No 136
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.38 E-value=3e+02 Score=30.12 Aligned_cols=41 Identities=12% Similarity=0.352 Sum_probs=27.0
Q ss_pred CcEEEEecc--cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCcc
Q 008161 344 AKMFYFSTH--SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPL 387 (575)
Q Consensus 344 ad~v~~sg~--~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l 387 (575)
.++|++.+. +++. ...+.++.+.|+++|+.|++|-....++
T Consensus 163 t~~V~~ESPsNPll~---v~DI~~l~~la~~~g~~vvVDnTf~~p~ 205 (409)
T KOG0053|consen 163 TKAVFLESPSNPLLK---VPDIEKLARLAHKYGFLVVVDNTFGSPY 205 (409)
T ss_pred ceEEEEECCCCCccc---cccHHHHHHHHhhCCCEEEEeCCcCccc
Confidence 556666642 2221 2245677888899999999997765553
No 137
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=24.80 E-value=3.3e+02 Score=23.33 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=36.7
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcC---CEEEEcCCCCCccccChhHHHHHHHHhcccCeEEe
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG---GIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIE 409 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G---~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~ 409 (575)
..+||++++++-+...+. ...+...+..+++.+ .+|++--=++. ...+.+....+.+|+++
T Consensus 34 ~e~AD~iiiNTC~V~~~A-e~k~~~~i~~l~~~~~~~~~ivv~GC~aq-------~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESA-EQKSRNRIRKLKKLKKPGAKIVVTGCMAQ-------RYGEELKKEFPEVDLVV 97 (98)
T ss_pred cccCCEEEEEcCCCCcHH-HHHHHHHHHHHHHhcCCCCEEEEEeCccc-------cChHHHHhhCCCeEEEe
Confidence 367899999976655543 333444445554443 66666532222 23566777888899886
No 138
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=24.65 E-value=5.4e+02 Score=27.43 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=74.0
Q ss_pred ceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEec
Q 008161 245 KFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVK 324 (575)
Q Consensus 245 ~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~ 324 (575)
-...-.||+|.|+.-.+...|.+-.=+-++..|. +.|+...++.. +.+- ...| . -....+.+..
T Consensus 14 I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD~------q~L~~~~a~~k-i~iG-~~~t-~---GlGaGa~P~v---- 77 (338)
T COG0206 14 IKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDA------QALKSSKADRK-ILIG-ESIT-R---GLGAGANPEV---- 77 (338)
T ss_pred EEEEEeCCcchHHHHHHHHhhhCceEEEEeccCH------HHHhccccCeE-EEec-ccee-e---ccCCCCCcHH----
Confidence 3446679999999999999998743344577873 44554444432 2221 1111 0 0000011100
Q ss_pred CCcc-ccCCccccchhhhccCcEEEEe-cccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCcccc--ChhHHHHHHHH
Q 008161 325 PCAE-DALTKSEINIDVLKEAKMFYFS-THSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQ--SGEETKMFIQQ 400 (575)
Q Consensus 325 ~ga~-~~lt~e~i~~~~l~~ad~v~~s-g~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~--~~~~~~~~l~~ 400 (575)
+.. ...+.+.| .+.++.+|++++. |...- .-.....-+.+.+++.|++++-=...|..+-. ....+..-+..
T Consensus 78 -G~~aAee~~~~I-~~~l~g~dmvfitaG~GGG--TGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~ 153 (338)
T COG0206 78 -GRAAAEESIEEI-EEALKGADMVFVTAGMGGG--TGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEE 153 (338)
T ss_pred -HHHHHHHHHHHH-HHHhccCCeEEEEeeecCC--ccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHH
Confidence 100 01111222 4678899966655 33211 11112233456667788765433333322210 11234455666
Q ss_pred hcccCe--EEeCCHHHHHH
Q 008161 401 AWTLAD--VIEVTKQELEF 417 (575)
Q Consensus 401 ll~~aD--II~~N~~Ea~~ 417 (575)
|-.++| |+++|..-+..
T Consensus 154 L~~~~DtlIvi~Ndkll~~ 172 (338)
T COG0206 154 LREVVDTLIVIPNDKLLKG 172 (338)
T ss_pred HHHhCCcEEEEecHHHHhc
Confidence 777665 67778764443
No 139
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=24.43 E-value=76 Score=38.18 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=14.1
Q ss_pred ccccCC-ccchhhhhhh--hhhcccccccccC
Q 008161 127 KAASAS-TGMEEEKTEK--KVRRRRKTTKKIG 155 (575)
Q Consensus 127 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~ 155 (575)
|-+.|+ +..+++++++ |+|.||++..+.|
T Consensus 457 K~~vsd~e~peekkt~~k~ksR~~~~~sSese 488 (1567)
T KOG1015|consen 457 KLTVSDGESPEEKKTKPKEKSRNRRKVSSESE 488 (1567)
T ss_pred chhhcccccchhhhcchhhhccchhhhccccc
Confidence 444433 2234444444 4566666655553
No 140
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=24.37 E-value=5.5e+02 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=26.8
Q ss_pred cCcEEEEeccccccc-chHHHHHHHHHHHhhcCCEEEEcCC
Q 008161 343 EAKMFYFSTHSMLER-NMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~-~~~e~~~~ll~~ak~~G~~Vv~D~~ 382 (575)
+.++|+++|...... ...+.+.++++.++++|+.+++|=.
T Consensus 136 ~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDEA 176 (346)
T TIGR03576 136 GTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDA 176 (346)
T ss_pred CceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECC
Confidence 345677776432111 1246678888889999999999954
No 141
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=24.36 E-value=5.8e+02 Score=25.11 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=19.8
Q ss_pred CceEEecCChHHHHHHHHHHcCCC
Q 008161 244 EKFIRSPGGCTGSAAIALARLGGK 267 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG~~ 267 (575)
.-...-.||.|.++|..|+++|..
T Consensus 23 ~VlivG~GglGs~va~~La~~Gvg 46 (228)
T cd00757 23 RVLVVGAGGLGSPAAEYLAAAGVG 46 (228)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCC
Confidence 445567899999999999999964
No 142
>PRK07582 cystathionine gamma-lyase; Validated
Probab=24.34 E-value=3.3e+02 Score=28.94 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=16.2
Q ss_pred HHHHHHHHhhcCCEEEEcCCC
Q 008161 363 TLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~ 383 (575)
+.++++.++++|+.+++|-.+
T Consensus 151 i~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 151 LAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 566777788889999999653
No 143
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=23.87 E-value=6.3e+02 Score=26.74 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=26.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|++...... -.....+.++.+.++++|+.+++|-.+.
T Consensus 136 ~tklv~le~P~NP-~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 136 NTKAIFIETPTNP-LMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred CceEEEEECCCCC-CCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 4567777542110 0134567788888999999999996653
No 144
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.04 E-value=4.9e+02 Score=28.43 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=25.2
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|++......... .-.+.++.+.|+++|+.+++|-...
T Consensus 148 ~tklV~vesp~NptG~-v~dl~~I~~la~~~gi~livD~a~a 188 (427)
T PRK05994 148 RTKAIFIESIANPGGT-VTDIAAIAEVAHRAGLPLIVDNTLA 188 (427)
T ss_pred CCeEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECCcc
Confidence 4567777542111001 1124677888899999999997644
No 145
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=22.93 E-value=6.7e+02 Score=26.91 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=25.9
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++......... .-.+.++.+.|+++|+.|++|-.+..+
T Consensus 137 ~tklV~ie~p~NPtG~-v~dl~~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 137 RTKLVFIETMTNPTLK-VIDVPEVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred CceEEEEECCCCCCCE-ecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 3567777643211000 112457788889999999999765433
No 146
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=22.67 E-value=74 Score=33.01 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=49.7
Q ss_pred ccCCccccchhh------hccCcEEEEecccc---cccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHH
Q 008161 329 DALTKSEINIDV------LKEAKMFYFSTHSM---LERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQ 399 (575)
Q Consensus 329 ~~lt~e~i~~~~------l~~ad~v~~sg~~l---~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~ 399 (575)
..+++++|..-+ .....+|+++...- -...+.+.+.++.+.|+++|+++.+|- ..+|.........+.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDG---ARl~~a~~~~~~~~~ 180 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDG---ARLANAAAALGVSLA 180 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEE---TTHHHHHCHHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEeh---hhHHHhhhcccccHH
Confidence 356677664211 12356888875322 123457788999999999999999994 466654333455667
Q ss_pred HhcccCeEEeCC
Q 008161 400 QAWTLADVIEVT 411 (575)
Q Consensus 400 ~ll~~aDII~~N 411 (575)
++..++|++.++
T Consensus 181 e~~~~~D~v~~~ 192 (290)
T PF01212_consen 181 EIAAGADSVSFG 192 (290)
T ss_dssp HHHTTSSEEEEE
T ss_pred HHhhhCCEEEEE
Confidence 777889988653
No 147
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=22.61 E-value=2.3e+02 Score=31.14 Aligned_cols=128 Identities=22% Similarity=0.265 Sum_probs=67.2
Q ss_pred cC-CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhc
Q 008161 264 LG-GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLK 342 (575)
Q Consensus 264 LG-~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~ 342 (575)
+| ..-.=+-.||....|..+..+|...|+.- |.+. + +|- ..... +. ..-+ ...+..+++ ...+.
T Consensus 173 ~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~--i~Ia-N-RT~-------erA~~-La-~~~~-~~~~~l~el-~~~l~ 237 (414)
T COG0373 173 FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKK--ITIA-N-RTL-------ERAEE-LA-KKLG-AEAVALEEL-LEALA 237 (414)
T ss_pred hcccccCeEEEEcccHHHHHHHHHHHhCCCCE--EEEE-c-CCH-------HHHHH-HH-HHhC-CeeecHHHH-HHhhh
Confidence 45 34444555777789999999999999853 3221 1 120 00000 00 0011 112223333 46788
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
.+|+|+.+..+...-...+.+.+++..-+ . .++||+..|..+ -..+-...++...+.+++..+.
T Consensus 238 ~~DvVissTsa~~~ii~~~~ve~a~~~r~--~-~livDiavPRdi----------e~~v~~l~~v~l~~iDDL~~iv 301 (414)
T COG0373 238 EADVVISSTSAPHPIITREMVERALKIRK--R-LLIVDIAVPRDV----------EPEVGELPNVFLYTIDDLEEIV 301 (414)
T ss_pred hCCEEEEecCCCccccCHHHHHHHHhccc--C-eEEEEecCCCCC----------CccccCcCCeEEEehhhHHHHH
Confidence 99998887543222223444444443322 2 799999765433 1223334566667777777664
No 148
>PRK05939 hypothetical protein; Provisional
Probab=22.51 E-value=7.7e+02 Score=26.60 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=26.9
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|++....... .....+.++.+.|+++|+.+++|....
T Consensus 131 ~tklV~vesp~Npt-G~v~dl~~I~~la~~~gi~livD~t~a 171 (397)
T PRK05939 131 NTRMVFVETIANPG-TQVADLAGIGALCRERGLLYVVDNTMT 171 (397)
T ss_pred CCeEEEEECCCCCC-CCHHhHHHHHHHHHHcCCEEEEECCcc
Confidence 45677776432111 123456788899999999999997543
No 149
>PRK05973 replicative DNA helicase; Provisional
Probab=22.41 E-value=6.5e+02 Score=25.30 Aligned_cols=104 Identities=10% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCc
Q 008161 254 TGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTK 333 (575)
Q Consensus 254 a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~ 333 (575)
+.+.+...++-|.+|.|++.=- ....+.+.+...|++..... . . ..++. . . .+..
T Consensus 81 alqfa~~~a~~Ge~vlyfSlEe---s~~~i~~R~~s~g~d~~~~~-----~--~--~~~d~--------~--d---~~~~ 135 (237)
T PRK05973 81 GLELAVEAMKSGRTGVFFTLEY---TEQDVRDRLRALGADRAQFA-----D--L--FEFDT--------S--D---AICA 135 (237)
T ss_pred HHHHHHHHHhcCCeEEEEEEeC---CHHHHHHHHHHcCCChHHhc-----c--c--eEeec--------C--C---CCCH
Confidence 4566776767788898987533 24677888888888754321 0 0 11110 0 0 0111
Q ss_pred cccchhhh--ccCcEEEEeccccccc-----chHHHHHHHHHHHhhcCCEEEEcCC
Q 008161 334 SEINIDVL--KEAKMFYFSTHSMLER-----NMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 334 e~i~~~~l--~~ad~v~~sg~~l~~~-----~~~e~~~~ll~~ak~~G~~Vv~D~~ 382 (575)
+.+-.... .+.++|+++++.++.. .....+..+...+++.|++|++=..
T Consensus 136 ~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQ 191 (237)
T PRK05973 136 DYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQ 191 (237)
T ss_pred HHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11111111 2468999998654421 1223445566788999999887643
No 150
>PRK06444 prephenate dehydrogenase; Provisional
Probab=22.28 E-value=2.7e+02 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=18.5
Q ss_pred eEEEEEeCCChHHHHHHHHHHhCCCcc
Q 008161 268 VAFMGKLGDDEYGQAMLYYMNVNNVQT 294 (575)
Q Consensus 268 v~lvg~VG~D~~G~~i~~~L~~~GVdt 294 (575)
+.+||.- ...|+++...|++.|..+
T Consensus 3 ~~iiG~~--G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 3 EIIIGKN--GRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EEEEecC--CcHHHHHHHHHHhCCCEE
Confidence 4455533 569999999999998664
No 151
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=22.21 E-value=84 Score=25.90 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.0
Q ss_pred ccCchHHHHHHHHHHHHcC
Q 008161 491 MSASGDGIVAGIMRMLTVQ 509 (575)
Q Consensus 491 TtGAGDaF~AGfl~~L~~g 509 (575)
..|+.++|++||+.||.--
T Consensus 46 ~~G~SE~~I~Gfl~Gl~~A 64 (77)
T PF10911_consen 46 KQGWSESYILGFLAGLQYA 64 (77)
T ss_pred HccccHHHHHHHHHHHHHH
Confidence 3499999999999998644
No 152
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.08 E-value=1.4e+02 Score=24.86 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCcc
Q 008161 251 GGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQT 294 (575)
Q Consensus 251 GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt 294 (575)
+|.+...+..+...|.++.+++.+|... +..|+..||.+
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~a-----~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGPA-----AAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCccH-----HHHHHHcCCEE
Confidence 4667889999999999999999999763 45678889875
No 153
>PF08070 DTHCT: DTHCT (NUC029) region; InterPro: IPR012542 The DTCHT region is the C-terminal part of DNA gyrases B / topoisomerase IV / HATPase proteins []. This region is composed of quite low complexity sequence.; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0005634 nucleus
Probab=21.70 E-value=1.2e+02 Score=26.18 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=3.7
Q ss_pred hccccccc
Q 008161 145 RRRRKTTK 152 (575)
Q Consensus 145 ~~~~~~~~ 152 (575)
-..+|+++
T Consensus 58 ~~~KK~Kk 65 (96)
T PF08070_consen 58 VASKKSKK 65 (96)
T ss_pred cccccccc
Confidence 34445544
No 154
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=64 Score=36.55 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.4
Q ss_pred EEEEcCC
Q 008161 376 IIFYDVN 382 (575)
Q Consensus 376 ~Vv~D~~ 382 (575)
...|||.
T Consensus 368 llsLdp~ 374 (665)
T KOG2422|consen 368 LLSLDPS 374 (665)
T ss_pred HhhcCCc
Confidence 3455554
No 155
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=21.55 E-value=3.1e+02 Score=29.18 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=52.4
Q ss_pred HcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhc
Q 008161 263 RLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLK 342 (575)
Q Consensus 263 rLG~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~ 342 (575)
+-..++.++|.-|- .|..+++.|...+.....+......+ ..|+. +.+ .+ ..+..++++...+.
T Consensus 5 ~~~~kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las~r---------saGk~-~~~--~~--~~~~v~~~~~~~~~ 68 (344)
T PLN02383 5 ENGPSVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLASAR---------SAGKK-VTF--EG--RDYTVEELTEDSFD 68 (344)
T ss_pred CCCCeEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEccC---------CCCCe-eee--cC--ceeEEEeCCHHHHc
Confidence 34567777777664 79999999987554332222111111 11221 111 11 11223334444567
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
++|+++++. ..+...++...+.+.|+ +++|.+..
T Consensus 69 ~~D~vf~a~-------p~~~s~~~~~~~~~~g~-~VIDlS~~ 102 (344)
T PLN02383 69 GVDIALFSA-------GGSISKKFGPIAVDKGA-VVVDNSSA 102 (344)
T ss_pred CCCEEEECC-------CcHHHHHHHHHHHhCCC-EEEECCch
Confidence 899998862 22345566666666665 67897643
No 156
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=21.30 E-value=1e+03 Score=25.59 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=51.8
Q ss_pred CeEEEEEeCCChHHHHHHHHHH-hCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch-hhhccC
Q 008161 267 KVAFMGKLGDDEYGQAMLYYMN-VNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI-DVLKEA 344 (575)
Q Consensus 267 ~v~lvg~VG~D~~G~~i~~~L~-~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~-~~l~~a 344 (575)
++.++|+-| ..|+.+++.|. +.++....+..-...+. .|. ...+. +. .+...++.. ..+.+.
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss~~s---------~g~-~~~f~--~~--~~~v~~~~~~~~~~~v 65 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFSTSQL---------GQA-APSFG--GT--TGTLQDAFDIDALKAL 65 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEchhh---------CCC-cCCCC--CC--cceEEcCcccccccCC
Confidence 456666665 48999999888 66666333322111111 111 11111 11 112222322 256788
Q ss_pred cEEEEecccccccchHHHHHHHHHHHhhcCCE-EEEcCCC
Q 008161 345 KMFYFSTHSMLERNMKSTTLQAIKISKQFGGI-IFYDVNL 383 (575)
Q Consensus 345 d~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~-Vv~D~~~ 383 (575)
|+++++. ..+...++...+.+.|.. +++|.++
T Consensus 66 Divffa~-------g~~~s~~~~p~~~~aG~~~~VIDnSS 98 (366)
T TIGR01745 66 DIIITCQ-------GGDYTNEIYPKLRESGWQGYWIDAAS 98 (366)
T ss_pred CEEEEcC-------CHHHHHHHHHHHHhCCCCeEEEECCh
Confidence 9998873 234567778888889974 7889753
No 157
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.27 E-value=1e+02 Score=37.86 Aligned_cols=14 Identities=29% Similarity=0.340 Sum_probs=7.8
Q ss_pred cCccCchHHHHHHH
Q 008161 489 SDMSASGDGIVAGI 502 (575)
Q Consensus 489 VDTtGAGDaF~AGf 502 (575)
-|..|-||++.-+.
T Consensus 2106 edkr~R~DaLhY~h 2119 (3015)
T KOG0943|consen 2106 EDKRARGDALHYAH 2119 (3015)
T ss_pred hhhhcchhHHHHHH
Confidence 45556666665443
No 158
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=21.26 E-value=8.3e+02 Score=24.37 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=55.6
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEe--CCHHHHHHh
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIE--VTKQELEFL 418 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~--~N~~Ea~~L 418 (575)
-..+||+.+.|.+ ..+++...++.|++.|+.+.+|+- ..|. .......+.++ .+|++. .+.+.- .
T Consensus 78 ~aGAd~~tV~g~A-----~~~TI~~~i~~A~~~~~~v~iDl~---~~~~-~~~~~~~l~~~--gvd~~~~H~g~D~q--~ 144 (217)
T COG0269 78 EAGADWVTVLGAA-----DDATIKKAIKVAKEYGKEVQIDLI---GVWD-PEQRAKWLKEL--GVDQVILHRGRDAQ--A 144 (217)
T ss_pred HcCCCEEEEEecC-----CHHHHHHHHHHHHHcCCeEEEEee---cCCC-HHHHHHHHHHh--CCCEEEEEecccHh--h
Confidence 3578999998753 457889999999999999999974 2332 12223333333 345544 444432 2
Q ss_pred hCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecC
Q 008161 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNG 461 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G 461 (575)
.|.+.... ....++++...| -.|-|+-|
T Consensus 145 ~G~~~~~~--------------~l~~ik~~~~~g-~~vAVaGG 172 (217)
T COG0269 145 AGKSWGED--------------DLEKIKKLSDLG-AKVAVAGG 172 (217)
T ss_pred cCCCccHH--------------HHHHHHHhhccC-ceEEEecC
Confidence 56654210 134566666655 35666655
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.13 E-value=1.5e+02 Score=23.72 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCC------ChHHHHHHHHHHhCCCccc
Q 008161 254 TGSAAIALARLGGKVAFMGKLGD------DEYGQAMLYYMNVNNVQTR 295 (575)
Q Consensus 254 a~NvA~aLarLG~~v~lvg~VG~------D~~G~~i~~~L~~~GVdt~ 295 (575)
|.=+|..|+++|.++.++..-.. ......+.+.|++.||++.
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 56678889999999999885432 2357788899999998754
No 160
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=21.06 E-value=88 Score=35.03 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=11.1
Q ss_pred cchhhhhhhhhhccccccccc
Q 008161 134 GMEEEKTEKKVRRRRKTTKKI 154 (575)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~ 154 (575)
..++..+.++.+++||.++..
T Consensus 259 ~~kkk~~~~~~~~krkkk~d~ 279 (555)
T KOG2393|consen 259 DNKKKTTTAKGATKRKKKKDV 279 (555)
T ss_pred cccccccccccccccccccCC
Confidence 334444555656666655543
No 161
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=21.02 E-value=5e+02 Score=27.32 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCChHHHHHHHHHHhCCCcc---ceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhc
Q 008161 266 GKVAFMGKLGDDEYGQAMLYYMNVNNVQT---RSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLK 342 (575)
Q Consensus 266 ~~v~lvg~VG~D~~G~~i~~~L~~~GVdt---~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~ 342 (575)
.++.++|+-|. .|+.+.+.|.+.+... ..+... ...+..+. . .|. .+.+ .++....+.
T Consensus 2 ~~V~IvGAtG~--vG~~l~~lL~~~~hp~~~l~~l~s~--~~~g~~l~-~--~g~-~i~v-----------~d~~~~~~~ 62 (334)
T PRK14874 2 YNVAVVGATGA--VGREMLNILEERNFPVDKLRLLASA--RSAGKELS-F--KGK-ELKV-----------EDLTTFDFS 62 (334)
T ss_pred CEEEEECCCCH--HHHHHHHHHHhCCCCcceEEEEEcc--ccCCCeee-e--CCc-eeEE-----------eeCCHHHHc
Confidence 45667776664 7999999998865443 333211 11122111 1 121 1111 112222346
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
++|+++++. ......++...+.+.|+ +++|.+..
T Consensus 63 ~vDvVf~A~-------g~g~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 63 GVDIALFSA-------GGSVSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred CCCEEEECC-------ChHHHHHHHHHHHhCCC-EEEECCch
Confidence 789888762 22344555666656777 78997643
No 162
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=20.98 E-value=8.1e+02 Score=24.12 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=37.0
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhccc-CeEEeC
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL-ADVIEV 410 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~-aDII~~ 410 (575)
++++-+.-. ...+.+.++++.+++.+.+|++--.....-|. .+.....+..+... +|++++
T Consensus 93 ~d~vDiEl~-----~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~-~~~l~~~~~~~~~~gaDivKi 154 (228)
T TIGR01093 93 PDFVDIELF-----LPDDAVKELINIAKKGGTKIIMSYHDFQKTPS-WEEIVERLEKALSYGADIVKI 154 (228)
T ss_pred CCEEEEEcc-----CCHHHHHHHHHHHHHCCCEEEEeccCCCCCCC-HHHHHHHHHHHHHhCCCEEEE
Confidence 577777621 12455667778788888898887543333333 23344555555555 888876
No 163
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=20.90 E-value=4.5e+02 Score=25.98 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=36.2
Q ss_pred EEEEec-ccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCH
Q 008161 346 MFYFST-HSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 346 ~v~~sg-~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~ 412 (575)
.|.++| -+++ ..+.+.++++.+++.|..+.++.|.....+ .+.+..+++.+|.+.++.
T Consensus 73 ~V~~sGGEPll---~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~------~~~~~~ll~~~d~v~isl 131 (246)
T PRK11145 73 GVTASGGEAIL---QAEFVRDWFRACKKEGIHTCLDTNGFVRRY------DPVIDELLDVTDLVMLDL 131 (246)
T ss_pred eEEEeCccHhc---CHHHHHHHHHHHHHcCCCEEEECCCCCCcc------hHHHHHHHHhCCEEEECC
Confidence 566665 2332 345567889999999999999877543211 234555666677665543
No 164
>PF12770 CHAT: CHAT domain
Probab=20.38 E-value=5.3e+02 Score=25.77 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008161 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
..+..++..|++.||.++.. + . | -+.-.|+..|-..|..| .++.+|
T Consensus 213 ~l~~~~l~aG~~~Vi~~~w~-------------V--------~----d--~~a~~f~~~fY~~L~~g-------~~~~~A 258 (287)
T PF12770_consen 213 GLARAFLQAGAPAVIGMLWP-------------V--------P----D--QAAARFMRRFYRALLQG-------QSVAEA 258 (287)
T ss_pred HHHHHHHHcCCCEEEecccC-------------c--------c----h--HHHHHHHHHHHHhhhcC-------CCHHHH
Confidence 45667778898888876533 1 1 1 34678999999999999 899999
Q ss_pred HHHHHHHHHH
Q 008161 523 IKYAIDCGVR 532 (575)
Q Consensus 523 l~~A~aaAA~ 532 (575)
++.|......
T Consensus 259 l~~Ar~~l~~ 268 (287)
T PF12770_consen 259 LRQARRALRR 268 (287)
T ss_pred HHHHHHHHHh
Confidence 9988776653
No 165
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=20.14 E-value=4.1e+02 Score=28.73 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=52.2
Q ss_pred CeEEEEEeCCChHHHHHHH-HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCcccc-chhhhccC
Q 008161 267 KVAFMGKLGDDEYGQAMLY-YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEI-NIDVLKEA 344 (575)
Q Consensus 267 ~v~lvg~VG~D~~G~~i~~-~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i-~~~~l~~a 344 (575)
++.++|+-| ..|+.+++ .|.+..+....+....... .|.+...+. +. .....++ +...+.++
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~~----------sg~~~~~f~--g~--~~~v~~~~~~~~~~~~ 66 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTSQ----------AGGAAPSFG--GK--EGTLQDAFDIDALKKL 66 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecchh----------hCCcccccC--CC--cceEEecCChhHhcCC
Confidence 456666655 47888887 8887777654443322211 122111111 11 1111111 13445789
Q ss_pred cEEEEecccccccchHHHHHHHHHHHhhcCCE-EEEcCCC
Q 008161 345 KMFYFSTHSMLERNMKSTTLQAIKISKQFGGI-IFYDVNL 383 (575)
Q Consensus 345 d~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~-Vv~D~~~ 383 (575)
|+++++. ..+...++...+.+.|.+ +++|.+.
T Consensus 67 Divf~a~-------~~~~s~~~~~~~~~aG~~~~VID~Ss 99 (369)
T PRK06598 67 DIIITCQ-------GGDYTNEVYPKLRAAGWQGYWIDAAS 99 (369)
T ss_pred CEEEECC-------CHHHHHHHHHHHHhCCCCeEEEECCh
Confidence 9998863 334667777778778874 8999764
No 166
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=20.06 E-value=2.9e+02 Score=27.86 Aligned_cols=43 Identities=5% Similarity=-0.081 Sum_probs=32.1
Q ss_pred hhccCcEEEEecccccccchHHHHHHHHHHHh-hcCCEEEEcCCCCC
Q 008161 340 VLKEAKMFYFSTHSMLERNMKSTTLQAIKISK-QFGGIIFYDVNLPL 385 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak-~~G~~Vv~D~~~~~ 385 (575)
.....|.|.++|... ...+.+.++++.++ +.+.+|++-|+...
T Consensus 38 ~~~GTDaImIGGS~g---vt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 38 AEAGTDAIMIGGSDG---VTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred HHcCCCEEEECCccc---ccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 345689999998643 23456777888888 88999999987543
No 167
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=20.06 E-value=7.4e+02 Score=24.79 Aligned_cols=32 Identities=28% Similarity=0.194 Sum_probs=23.0
Q ss_pred CceEEecCChHHHHHHHHHHcCCCeEEEEEeCCC
Q 008161 244 EKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDD 277 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D 277 (575)
.-...-.||-|.++|.+|++.|..- ++.+-.|
T Consensus 26 ~VlvvG~GglGs~va~~La~~Gvg~--i~lvD~D 57 (240)
T TIGR02355 26 RVLIVGLGGLGCAASQYLAAAGVGN--LTLLDFD 57 (240)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCE--EEEEeCC
Confidence 4455667899999999999999643 3334444
No 168
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=20.03 E-value=52 Score=35.14 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=3.3
Q ss_pred cccccCC
Q 008161 157 ETEDQGN 163 (575)
Q Consensus 157 ~~~~~~~ 163 (575)
+.|++|.
T Consensus 47 DeEyE~~ 53 (390)
T KOG2897|consen 47 DEEYEGE 53 (390)
T ss_pred chhhhhh
Confidence 4455543
Done!