Query 008161
Match_columns 575
No_of_seqs 297 out of 2047
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iq0_A Putative ribokinase II; 100.0 5.2E-47 1.8E-51 395.2 30.1 317 203-563 2-320 (330)
2 3ljs_A Fructokinase; fructokia 100.0 1.1E-46 3.7E-51 393.9 27.2 318 203-555 3-328 (338)
3 3pl2_A Sugar kinase, ribokinas 100.0 6.8E-46 2.3E-50 384.4 32.0 309 203-555 7-317 (319)
4 4du5_A PFKB; structural genomi 100.0 3.1E-45 1.1E-49 383.1 32.3 306 204-552 26-334 (336)
5 3hj6_A Fructokinase, FRK; fruc 100.0 2.2E-46 7.7E-51 390.0 20.4 308 202-554 19-326 (327)
6 3ktn_A Carbohydrate kinase, PF 100.0 1.5E-44 5E-49 378.7 32.0 318 204-559 2-335 (346)
7 3h49_A Ribokinase; transferase 100.0 7.7E-45 2.6E-49 378.1 29.6 313 203-557 4-316 (325)
8 1v1a_A 2-keto-3-deoxygluconate 100.0 3.5E-44 1.2E-48 370.1 33.2 302 204-557 1-305 (309)
9 2v78_A Fructokinase; transfera 100.0 1.5E-44 5E-49 373.6 29.9 304 204-555 1-310 (313)
10 2qcv_A Putative 5-dehydro-2-de 100.0 6.8E-44 2.3E-48 371.4 34.8 314 203-556 10-326 (332)
11 3ewm_A Uncharacterized sugar k 100.0 9.1E-44 3.1E-48 367.9 32.9 297 204-555 1-300 (313)
12 1tyy_A Putative sugar kinase; 100.0 1.4E-44 4.8E-49 378.8 26.9 309 202-557 22-331 (339)
13 2dcn_A Hypothetical fructokina 100.0 1.1E-43 3.6E-48 366.6 30.1 302 204-555 1-308 (311)
14 3ry7_A Ribokinase; transferase 100.0 1.3E-43 4.6E-48 364.4 28.9 301 204-552 2-304 (304)
15 1rkd_A Ribokinase; carbohydrat 100.0 3.2E-43 1.1E-47 362.7 31.0 303 203-555 3-307 (309)
16 3kzh_A Probable sugar kinase; 100.0 1.3E-43 4.3E-48 369.4 27.6 308 201-558 3-312 (328)
17 4e3a_A Sugar kinase protein; s 100.0 1.8E-43 6.2E-48 372.4 29.1 312 202-552 23-349 (352)
18 3lhx_A Ketodeoxygluconokinase; 100.0 1.8E-43 6.2E-48 366.6 28.0 289 205-541 5-304 (319)
19 4e69_A 2-dehydro-3-deoxyglucon 100.0 4.2E-43 1.4E-47 365.9 30.7 295 198-541 17-317 (328)
20 4gm6_A PFKB family carbohydrat 100.0 5E-43 1.7E-47 367.8 29.1 316 202-558 22-347 (351)
21 2rbc_A Sugar kinase, AGR_C_456 100.0 2.8E-42 9.5E-47 362.1 30.5 297 203-555 28-328 (343)
22 3vas_A Putative adenosine kina 100.0 2.3E-42 8E-47 366.3 28.3 322 197-550 15-365 (370)
23 2c4e_A Sugar kinase MJ0406; tr 100.0 1.5E-42 5E-47 357.1 25.1 296 203-555 4-299 (302)
24 3go6_A Ribokinase RBSK; phosph 100.0 6.7E-42 2.3E-46 354.3 29.7 285 202-556 17-305 (310)
25 2fv7_A Ribokinase; structural 100.0 1.3E-41 4.3E-46 354.9 29.5 303 202-551 22-328 (331)
26 3ikh_A Carbohydrate kinase; tr 100.0 3.3E-42 1.1E-46 354.3 24.7 285 204-557 2-290 (299)
27 3uq6_A Adenosine kinase, putat 100.0 4.6E-42 1.6E-46 364.2 25.5 318 206-554 28-371 (372)
28 2nwh_A AGR_C_3442P, carbohydra 100.0 8.8E-42 3E-46 353.8 26.7 301 203-555 2-307 (317)
29 2pkf_A Adenosine kinase; trans 100.0 2.6E-41 8.8E-46 353.2 28.8 306 198-555 4-319 (334)
30 3otx_A Adenosine kinase, putat 100.0 1.4E-41 4.7E-46 356.5 26.0 310 203-546 6-342 (347)
31 1vm7_A Ribokinase; TM0960, str 100.0 3.6E-41 1.2E-45 348.7 28.8 294 205-554 15-309 (311)
32 3loo_A Anopheles gambiae adeno 100.0 9.7E-42 3.3E-46 360.7 23.5 311 204-547 23-359 (365)
33 2qhp_A Fructokinase; NP_810670 100.0 2.9E-41 9.9E-46 345.7 25.9 285 204-545 3-289 (296)
34 2afb_A 2-keto-3-deoxygluconate 100.0 3.9E-40 1.3E-44 346.0 32.1 320 202-555 10-343 (351)
35 3b1n_A Ribokinase, putative; r 100.0 1.5E-40 5E-45 346.4 27.7 297 205-555 1-305 (326)
36 1bx4_A Protein (adenosine kina 100.0 9.2E-40 3.2E-44 342.1 26.8 309 203-545 5-340 (345)
37 3ie7_A LIN2199 protein; phosph 100.0 4.1E-39 1.4E-43 333.8 30.2 301 205-567 3-313 (320)
38 3umo_A 6-phosphofructokinase i 100.0 6.3E-39 2.2E-43 330.6 31.4 296 204-555 1-306 (309)
39 2jg1_A Tagatose-6-phosphate ki 100.0 5.4E-39 1.9E-43 335.0 29.9 297 202-555 18-324 (330)
40 2ajr_A Sugar kinase, PFKB fami 100.0 2.8E-39 9.5E-44 337.2 26.1 298 203-555 11-324 (331)
41 4e84_A D-beta-D-heptose 7-phos 100.0 2.6E-39 8.9E-44 340.8 26.0 298 202-550 51-351 (352)
42 3cqd_A 6-phosphofructokinase i 100.0 1.7E-38 5.9E-43 327.3 29.2 294 204-554 1-305 (309)
43 2abs_A Adenosine kinase, AK; r 100.0 1.5E-38 5.3E-43 338.2 27.9 312 202-540 30-375 (383)
44 2f02_A Tagatose-6-phosphate ki 100.0 4.1E-38 1.4E-42 327.1 29.9 294 205-555 3-307 (323)
45 3kd6_A Carbohydrate kinase, PF 100.0 6.2E-38 2.1E-42 324.5 28.8 292 205-556 3-298 (313)
46 2hlz_A Ketohexokinase; non-pro 100.0 8.3E-38 2.8E-42 323.4 29.5 283 202-540 15-309 (312)
47 3bf5_A Ribokinase related prot 100.0 2.8E-39 9.6E-44 334.0 17.3 283 200-555 16-300 (306)
48 2abq_A Fructose 1-phosphate ki 100.0 2.3E-37 7.7E-42 318.7 29.3 291 205-555 1-297 (306)
49 2jg5_A Fructose 1-phosphate ki 100.0 4.5E-37 1.5E-41 316.1 30.1 291 205-555 1-297 (306)
50 1vk4_A PFKB carbohydrate kinas 100.0 8.4E-35 2.9E-39 298.9 19.2 276 206-549 13-292 (298)
51 2yxt_A Pyridoxal kinase; beta 99.9 7.7E-23 2.6E-27 211.1 13.6 221 267-536 12-269 (312)
52 2ddm_A Pyridoxine kinase; pyri 99.9 3.1E-22 1E-26 203.7 14.9 230 264-539 19-269 (283)
53 1jxh_A Phosphomethylpyrimidine 99.8 5.7E-20 1.9E-24 187.8 13.7 164 344-538 95-270 (288)
54 1ub0_A THID, phosphomethylpyri 99.8 2.9E-19 9.8E-24 179.0 13.5 164 343-537 70-244 (258)
55 2i5b_A Phosphomethylpyrimidine 99.8 8.1E-18 2.8E-22 169.8 19.6 166 343-537 74-250 (271)
56 3pzs_A PM kinase, pyridoxamine 99.7 1.2E-16 4.1E-21 163.3 17.0 170 341-536 75-259 (289)
57 3h74_A Pyridoxal kinase; PSI-I 99.7 1.1E-16 3.9E-21 163.1 16.2 165 343-536 74-248 (282)
58 3mbh_A Putative phosphomethylp 99.7 2.2E-16 7.6E-21 161.7 16.8 170 343-536 77-258 (291)
59 3zs7_A Pyridoxal kinase; trans 99.7 1.2E-15 3.9E-20 157.0 16.3 165 342-535 75-260 (300)
60 1ekq_A Hydroxyethylthiazole ki 99.4 9.1E-13 3.1E-17 133.5 14.9 187 338-553 53-253 (272)
61 3rm5_A Hydroxymethylpyrimidine 99.4 3.4E-12 1.1E-16 141.7 16.1 159 343-530 91-269 (550)
62 1v8a_A Hydroxyethylthiazole ki 98.9 9.6E-09 3.3E-13 103.5 13.2 170 338-531 51-222 (265)
63 3bgk_A SMU.573, putative uncha 98.7 1.1E-07 3.6E-12 98.0 12.4 154 339-534 121-283 (311)
64 2r3b_A YJEF-related protein; p 98.6 4.3E-07 1.5E-11 93.4 15.8 153 339-534 107-266 (310)
65 3dzv_A 4-methyl-5-(beta-hydrox 98.5 2.3E-06 7.7E-11 86.4 17.6 172 338-529 53-229 (273)
66 3drw_A ADP-specific phosphofru 98.4 3.9E-06 1.3E-10 90.3 17.3 166 247-421 113-319 (474)
67 3rpz_A ADP/ATP-dependent NAD(P 98.3 1.2E-05 4.1E-10 81.4 14.7 172 341-553 96-271 (279)
68 3rss_A Putative uncharacterize 98.2 3.8E-06 1.3E-10 91.8 11.7 157 339-533 316-473 (502)
69 1ua4_A Glucokinase, ADP-depend 98.1 4.1E-05 1.4E-09 82.3 16.3 162 249-421 109-302 (455)
70 3nl6_A Thiamine biosynthetic b 97.7 0.00083 2.8E-08 73.9 18.5 168 339-529 301-495 (540)
71 1gc5_A ADP-dependent glucokina 97.7 0.00048 1.6E-08 74.1 15.6 159 249-419 117-313 (467)
72 1l2l_A ADP-dependent glucokina 97.6 0.00037 1.3E-08 74.8 13.1 161 249-419 112-303 (457)
73 3hpd_A Hydroxyethylthiazole ki 97.6 0.00081 2.8E-08 67.3 14.0 156 338-509 51-208 (265)
74 3k5w_A Carbohydrate kinase; 11 96.4 0.023 8E-07 61.4 12.7 171 342-556 291-467 (475)
75 3ukx_C Bimax2 peptide; arm rep 54.3 2.6 9E-05 25.8 -0.0 9 145-153 5-13 (28)
76 3can_A Pyruvate-formate lyase- 40.4 1.6E+02 0.0056 26.0 10.0 65 346-421 6-76 (182)
77 3hl2_A O-phosphoseryl-tRNA(SEC 25.6 1.6E+02 0.0053 31.6 7.9 113 244-384 135-256 (501)
78 3bc8_A O-phosphoseryl-tRNA(SEC 23.4 2.3E+02 0.0078 29.9 8.8 137 244-412 117-264 (450)
79 3lvm_A Cysteine desulfurase; s 21.5 1.2E+02 0.0042 30.4 6.2 20 363-382 182-201 (423)
80 3kgw_A Alanine-glyoxylate amin 21.4 2E+02 0.007 28.1 7.7 107 246-382 77-186 (393)
81 3fdb_A Beta C-S lyase, putativ 21.2 4.9E+02 0.017 25.1 10.6 41 343-383 150-192 (377)
No 1
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=100.00 E-value=5.2e-47 Score=395.25 Aligned_cols=317 Identities=19% Similarity=0.245 Sum_probs=261.5
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCC-CceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAP-EKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~-~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
.|++|+|||++++|++.... . ...... ......+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 2 ~m~~i~viG~~~~D~~~~~~------~--------~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~ 67 (330)
T 3iq0_A 2 SLSKVFTIGEILVEIMASKI------G--------QPFDQPGIWNGPYPSGAPAIFIDQVTRLGVPCGIISCVGNDGFGD 67 (330)
T ss_dssp --CEEEEESCCEEEEEEEEE------T--------CCSSSCEEEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHH
T ss_pred CCCCEEEEcceeEEEeccCC------C--------CCccccccccCcCCCCHHHHHHHHHHHCCCcEEEEEEeCCChHHH
Confidence 46789999999999997421 0 111111 12457899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEE-ecCCccccCCccccchhhhccCcEEEEecccccccchH
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTC-VKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~-~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
.+++.|++.||+++++.+.++.+|+++++.++.+|++++.+ ...++...++++++....+..+++||++|+.+..+...
T Consensus 68 ~i~~~l~~~gv~~~~v~~~~~~~T~~~~i~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~v~~sg~~~~~~~~~ 147 (330)
T 3iq0_A 68 INIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACGKLSAQHVDENILKDCTHFHIMGSSLFSFHMV 147 (330)
T ss_dssp HHHHHHHHTTCBCTTEEEETTSCCEEEEEEECC---CEEEEECTTSGGGGCCGGGCCGGGGTTEEEEEEEGGGCSSHHHH
T ss_pred HHHHHHHHcCCCeeeEEEcCCCCceEEEEEECCCCCeeEEEeccCChhhhCCHhhCCHhHhccCCEEEEechhhcCcchH
Confidence 99999999999999998888889999999999889985543 44557777888888777889999999999866566667
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+.++++.++++|++|+|||+.+..+|.. ....+.+..+++++|+|++|++|+..|+|...
T Consensus 148 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~-~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~----------------- 209 (330)
T 3iq0_A 148 DAVKKAVTIVKANGGVISFDPNIRKEMLDI-PEMRDALHFVLELTDIYMPSEGEVLLLSPHST----------------- 209 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCGGGGGS-HHHHHHHHHHHHTCSEECCBGGGTTTTCSCSS-----------------
T ss_pred HHHHHHHHHHHHcCCEEEEcCCCCccccCc-HHHHHHHHHHHhhCCEEecCHHHHHHHhCCCC-----------------
Confidence 888999999999999999999988888864 33567788899999999999999999988631
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..+.++.|+..|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++++
T Consensus 210 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~~~~ 277 (330)
T 3iq0_A 210 PERAIAGFLEEGVKEVIVKRGNQGASYYSANEQFHVES---YPVE--EVDPTGAGDCFGGAWIACRQLG-------FDAH 277 (330)
T ss_dssp HHHHHHHHHHHTCSEEEEECGGGCEEEECSSCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCceEEEECCceEEecC---CCCc--cCCCCChHHHHHHHHHHHHHcC-------CCHH
Confidence 23667788888999999999999999998876555554 3454 8999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCCCCcccc
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDPYGIRSM 563 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~~~~~~~ 563 (575)
+|+++|+++|+++|++.|+..++|++++|++++++....|+..
T Consensus 278 ~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~~~~~~~~i~~~ 320 (330)
T 3iq0_A 278 RALQYANACGALAVTRRGPMEGTSRLMEIETFIQRHDMSIREA 320 (330)
T ss_dssp HHHHHHHHHHHHHTTSCSSSTTCCCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcccchhHH
Confidence 9999999999999999999889999999999998888655543
No 2
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=100.00 E-value=1.1e-46 Score=393.91 Aligned_cols=318 Identities=24% Similarity=0.422 Sum_probs=258.3
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
.+++|+|||++++|++.... ++|. + +..+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 3 ~~~~v~viG~~~iD~~~~~~---~~~~--------~----~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~ 67 (338)
T 3ljs_A 3 LKKTILCFGEALIDMLAQPL---VKKG--------M----PRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDF 67 (338)
T ss_dssp -CCEEEEESCCEEEEEECCC---SSTT--------S----CCCEEEEEECHHHHHHHHHHHHTCCEEEESEEESSHHHHH
T ss_pred CCCCEEEEChhhhheeccCC---CCcc--------c----hhceeecCCChHHHHHHHHHhCCCCEEEEeeccCCHHHHH
Confidence 46789999999999998752 3331 1 3678899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEe-cCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
+++.|++.||+++++.+.++.+|+++++.++.+|+|++.+. .++++..+++++++...+..+++||++++.+..+...+
T Consensus 68 l~~~l~~~gV~~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 147 (338)
T 3ljs_A 68 LFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSMTDADIAE 147 (338)
T ss_dssp HHHHHHHHTCBCTTCEEESSSCCCEEEEECCSTTCCEEEEECSSCGGGGCCGGGCCHHHHHTEEEEEEEGGGGSSHHHHH
T ss_pred HHHHHHHcCCCceeEEEcCCCCceEEEEEECCCCCeEEEEeCCCChhHhCCHhhcCHhHhcCCCEEEECChHhcCchHHH
Confidence 99999999999999988788899999999998899987543 45777788888887777889999999998776667788
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+++..+|.+.....+.+..+++++|||++|++|++.|+|..... .
T Consensus 148 ~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~---------------~ 212 (338)
T 3ljs_A 148 VTFEGMRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAAD---------------A 212 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCGGGSCTTCCTHHHHHHHHHTCSEEEEEHHHHHHHHHHHTSC---------------H
T ss_pred HHHHHHHHHHHcCCEEEEECCCChhhcCCHHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCChh---------------H
Confidence 9999999999999999999999998997655667788899999999999999999998754221 0
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCC-------C
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI-------T 514 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~-------~ 514 (575)
.+.++.|++.|++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++|+... .
T Consensus 213 ~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~a~~~~~l~~g~~~~~~~~~~~~ 287 (338)
T 3ljs_A 213 NAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEVPT---FRVQ--VQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCH 287 (338)
T ss_dssp HHHHHHHTTTTCCEEEEEETTEEEEEEESSCEEEECC----------------CHHHHHHHHHHHHHHCSSTHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEeeCCCceEEEECCceEEeCC---CCCc--cCCCCCccHHHHHHHHHHHHhCCCcccchhcccc
Confidence 1267888888999999999999999998876556654 3454 89999999999999999999872110 0
Q ss_pred CchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 515 DKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 515 d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+..++++|+++|+++|+++|++.|+.+++|++++|++++.+
T Consensus 288 ~~~~l~~al~~A~~~aa~~v~~~Ga~~~~p~~~ev~~~~~~ 328 (338)
T 3ljs_A 288 DPESIVSTLRFAAAVGALAVTRQGAFTAMPMLSEVLSLIQE 328 (338)
T ss_dssp CHHHHHHHHHHHHHHHGGGC----CCCCTTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhh
Confidence 11589999999999999999999999999999999999854
No 3
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=100.00 E-value=6.8e-46 Score=384.36 Aligned_cols=309 Identities=18% Similarity=0.229 Sum_probs=263.0
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
.+++|+|||++++|+++... .+|.. ....+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 7 ~~~~v~~iG~~~~D~~~~~~---~~p~~-----------~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~ 72 (319)
T 3pl2_A 7 STHEVLAIGRLGVDIYPLQS---GVGLA-----------DVQSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFGEY 72 (319)
T ss_dssp CCCSEEEESCCEEEECBSSS---SCCGG-----------GCCCBCCEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHH
T ss_pred cCCCEEEEChhheeeecccC---CCCcc-----------ccceeeecCCCcHHHHHHHHHHCCCceEEEEEeCCCHHHHH
Confidence 45689999999999997642 23311 23667789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEe-cCCc-cccCCccccchhhhccCcEEEEecccccccchH
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCA-EDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga-~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
+++.|++.||+++++.+.++.+|+++++.++.+|++.+.+. .+++ ...+++++++...+..++++|++|+.+......
T Consensus 73 i~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (319)
T 3pl2_A 73 LLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVSLDDVREADILWFTLTGFSEEPSR 152 (319)
T ss_dssp HHHHHHHTTEECTTEEEESSSCCCEEEECCBTTTBCCEEEECCSCCGGGGCCGGGSCHHHHHHCSEEEEEGGGGSSTTHH
T ss_pred HHHHHHHcCCccccEEecCCCCceEEEEEEcCCCCeeEEEecCCCcccccCChhhCCHHHhccCCEEEEecccccCchhH
Confidence 99999999999999988888899999998887788766543 3445 567888888888899999999999865544455
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
..+..+++.+++ +.+++||++++..+|.+...+.+.+..+++++|+|++|++|+..|+|...
T Consensus 153 ~~~~~~~~~~~~-~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~----------------- 214 (319)
T 3pl2_A 153 GTHREILTTRAN-RRHTIFDLDYRPMFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETE----------------- 214 (319)
T ss_dssp HHHHHHHHHHTT-CSCEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEECHHHHHHHHSCCS-----------------
T ss_pred HHHHHHHHHHHH-CCcEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEEcCHHHHHHHcCCCC-----------------
Confidence 667777777765 67789999999999987777788889999999999999999999998642
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..+.++.|++.|++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++++
T Consensus 215 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~~~~ 282 (319)
T 3pl2_A 215 PERAGRALLERGVELAIVKQGPKGVMAMTKDETVEVPP---FFVD--VINGLGAGDAFGGALCHGLLSE-------WPLE 282 (319)
T ss_dssp HHHHHHHHHHTTCSEEEEEEETTEEEEECSSCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHhcCCCEEEEEECCCCeEEEECCceEEeCC---cccC--CCCCcCchHHHHHHHHHHHHcC-------CCHH
Confidence 13667888888999999999999999998876555554 3454 8999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+|+++|+++|+++|++.|+..++|+++||+++|++
T Consensus 283 ~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 317 (319)
T 3pl2_A 283 KVLRFANTAGALVASRLECSTAMPTTDEVEASLNQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHTSSCSGGGCCCHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhccCCcCCCCCHHHHHHHHhc
Confidence 99999999999999999998889999999999865
No 4
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=100.00 E-value=3.1e-45 Score=383.15 Aligned_cols=306 Identities=22% Similarity=0.257 Sum_probs=251.5
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
+++|+|||++++|++.... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 26 ~~~vlviG~~~iD~~~~~~---------------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i 90 (336)
T 4du5_A 26 ALDVITFGEAMMLLVADRP---------------GPLEHAEAFHKRTAGAETNVAIGLARLGLKVGWASRLGTDSMGRYL 90 (336)
T ss_dssp CEEEEEECCCEEEEEESSS---------------SCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHH
T ss_pred CCCEEEEChhhhhccCCCC---------------CccchhhheeecCCCHHHHHHHHHHhCCCcEEEEEEeCCCHHHHHH
Confidence 3579999999999997541 0112347788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeE-EEE-ecCCccccCCccccchhhhccCcEEEEecccc-cccchH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLR-MTC-VKPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNMK 360 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~-~~~-~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l-~~~~~~ 360 (575)
++.|++.||+++++.+.++.+|+++++.++.+|+++ +.+ ..+++...+++++++...+..+++||++|+.+ +++...
T Consensus 91 ~~~L~~~GV~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~ 170 (336)
T 4du5_A 91 LAAMAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASHMGVADIDEAWLLSARHLHATGVFPAISATTL 170 (336)
T ss_dssp HHHHHTTTCEEEEEEECTTSCCCEEEECCCSCC--CCEEEECTTCTGGGCCGGGCCHHHHTTEEEEEEESSGGGSCTTHH
T ss_pred HHHHHHcCCCcceEEEcCCCCcEEEEEEEcCCCCcceEEEECCCChhHhCChhhCCHhHhccCCEEEEcCchhhCChHHH
Confidence 999999999999998888889999999998888544 322 45678888999998878889999999999643 455667
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+.++++.++++|++|+|||+++..+|...+...+.+.++++++|+|++|..|++.|+|...
T Consensus 171 ~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~~Ea~~l~g~~~----------------- 233 (336)
T 4du5_A 171 PAARKTMDLMRAAGRSVSFDPNLRPTLWATPELMRDAINDLATRADWVLPGMEEGRFLTGETT----------------- 233 (336)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCGGGSSSHHHHHHHHHHHHTTCSEECCBHHHHHHHHCCCS-----------------
T ss_pred HHHHHHHHHHHHCCCEEEEeCcCCchhcCChHHHHHHHHHHHHhCCEEECCHHHHHHHhCCCC-----------------
Confidence 888999999999999999999998889987666677888999999999999999999998631
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..+.++.|.+.|++.||||+|.+|++++.++...++++ +++. .++|||||||+|+|||+++|++| ++++
T Consensus 234 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~-~vvdttGAGDaf~a~~~~~l~~g-------~~l~ 302 (336)
T 4du5_A 234 PEGVARFYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAG---FPVA-EVVDTVGAGDGFAVGVISALLDG-------LGVP 302 (336)
T ss_dssp HHHHHHHHHHTTCSEEEEECGGGCEEEEETTEEEEECC---CCC--------CHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHhcCCCEEEEEecCCceEEEECCeEEEeCC---ccCC-CCCCCccchHHHHHHHHHHHHcC-------CCHH
Confidence 13667788888999999999999999998765555554 3332 17999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhh
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEE 552 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~ 552 (575)
+|+++|+++|+++|++.|+..++|+++||+++
T Consensus 303 ~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~ 334 (336)
T 4du5_A 303 EAVKRGAWIGARAVQVLGDSEGLPTRAELNAA 334 (336)
T ss_dssp HHHHHHHHHHHHHHC------CCCCHHHHHCC
T ss_pred HHHHHHHHHHHHHhccCCCccCCCCHHHHHhc
Confidence 99999999999999999999899999999875
No 5
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=100.00 E-value=2.2e-46 Score=389.98 Aligned_cols=308 Identities=19% Similarity=0.258 Sum_probs=236.4
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
..|++|+|||++++|++.... ++|. ..+..+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 19 ~~~~~v~viG~~~~D~~~~~~---~~p~-----------~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~ 84 (327)
T 3hj6_A 19 KGDLDVVSLGEILVDMISTEE---VNSL-----------SQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGN 84 (327)
T ss_dssp ---CCEEEESCCEEEEECCCC---CSSG-----------GGCCEEEEEEECHHHHHHHHHHHTTCCEEEECEEESSHHHH
T ss_pred cCCCCEEEEccceEEEeccCC---CCCc-----------cccceeeeecCcHHHHHHHHHHHcCCcEEEEEEeCCCHHHH
Confidence 456899999999999997652 3331 13478889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++++.|++.||+++++.+.++.+|+++++..+ +|++++. ...++...++++++....+.+++++|++++.+..+...+
T Consensus 85 ~i~~~l~~~gv~~~~v~~~~~~~t~~~~v~~~-~g~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~v~~~g~~l~~~~~~~ 162 (327)
T 3hj6_A 85 YLLDVLKGEQIITDGIQQDKERRTTIVYVSKS-TRTPDWL-PYREADMYLQEDDIIFELIKRSKVFHLSTFILSRKPARD 162 (327)
T ss_dssp HHHHHHHHTTCBCTTCEEESSSCCCEEEECCC-TTCCCEE-EECSGGGGCCSCCCHHHHHC--CEEEEESHHHHSHHHHH
T ss_pred HHHHHHHHcCCCcccEEEcCCCCceEEEEEec-CCCccEE-EecChhhhCChhhcCHhHhccCCEEEECchHhcCchhHH
Confidence 99999999999999998888889999887765 5888765 445777788888777778899999999997654445678
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+.+..+|.......+.+..+++++|+|++|++|+..|+|....
T Consensus 163 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~----------------- 225 (327)
T 3hj6_A 163 TAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSP----------------- 225 (327)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCGGGSCSSSCSHHHHHHHHTTCSEECCBHHHHHHHHTTSCS-----------------
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhhcCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCH-----------------
Confidence 889999999999999999999888888765556778889999999999999999999987321
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
.+.++.|.+.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +++++
T Consensus 226 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~ag~~~~l~~g-------~~~~~ 293 (327)
T 3hj6_A 226 ENYVKRYLELGVKAVILTLGEEGVIASDGEEIIRIPA---FSED--AVDVTGAGDAFWSGFICGLLDG-------YTVKR 293 (327)
T ss_dssp SGGGGGGTTTTCSEEEEECSTTCEEEECSSCEEESCS---STTC-------CCHHHHHHHHHHTTSSC-------STTHH
T ss_pred HHHHHHHHhCCCCEEEEEECCCceEEEeCCeeEEcCC---cccc--cCCCcChhHHHHHHHHHHHHcC-------CCHHH
Confidence 1345566677999999999999999998765444443 3454 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 522 TIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
|+++|+++|+++|++.|+..++|++++|+++|+
T Consensus 294 a~~~A~a~aa~~v~~~G~~~~~p~~~ev~~~l~ 326 (327)
T 3hj6_A 294 SIKLGNGVAAFKIRGVGALSPVPSKEDIIKEYN 326 (327)
T ss_dssp HHHHHHCCCSSCC--------------------
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc
Confidence 999999999999999999989999999999874
No 6
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=100.00 E-value=1.5e-44 Score=378.71 Aligned_cols=318 Identities=17% Similarity=0.140 Sum_probs=259.7
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
|++|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 2 ~~~v~viG~~~~D~~~~~~---------------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i 66 (346)
T 3ktn_A 2 SLKIAAFGEVMLRFTPPEY---------------LMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRLGEAG 66 (346)
T ss_dssp CCEEEEECCCEEEEECSTT---------------CCTTTCSCCEEEEECHHHHHHHHHHHTTCEEEEEEEECSSHHHHHH
T ss_pred CCcEEEeChhhhhhcCCCC---------------CcccccceeEEeccCHHHHHHHHHHHcCCCeEEEEecCCCHHHHHH
Confidence 5789999999999996321 1112357888999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEe---cCCccccCCccccc-hhhhccCcEEEEecccc-cccc
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV---KPCAEDALTKSEIN-IDVLKEAKMFYFSTHSM-LERN 358 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~---~~ga~~~lt~e~i~-~~~l~~ad~v~~sg~~l-~~~~ 358 (575)
++.|++.||+++++.+. +.+|+++++.++..++++++.+ .+++...+++++++ ...+..+++||++|+.+ .++.
T Consensus 67 ~~~l~~~gv~~~~v~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 145 (346)
T 3ktn_A 67 KAALRKLGISDQWVGEK-GDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYDFEAFLAEVDMVHICGISLSLTEK 145 (346)
T ss_dssp HHHHHHTTCBCTTEEEC-CSCCEEEEEECCBTTBCCEEEECCCTTSTTTTCCGGGSCHHHHHTTCSEEEECTHHHHHCHH
T ss_pred HHHHHHcCCcceEEEeC-CCceEEEEEEecCCCCCceEEecCCCCChhhhCChhhcChHHHhCCCCEEEEeCccccCCHH
Confidence 99999999999999875 5789999988775555444322 24677778888887 45789999999998753 3445
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccCh--hHHHHHHHHhcccCeEEeCCHHHHHHhhCCC-CCccccccccccc
Q 008161 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSG--EETKMFIQQAWTLADVIEVTKQELEFLCGIK-PTEEFDTKNNARS 435 (575)
Q Consensus 359 ~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~--~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~-~~~~~d~~~~~~~ 435 (575)
..+.+.++++.++++|++|+|||+++..+|... ....+.+.++++++|+|++|+.|+..|+|.. .....+.. .
T Consensus 146 ~~~~~~~~~~~a~~~g~~v~~D~~~r~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~-~--- 221 (346)
T 3ktn_A 146 TRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEA-Q--- 221 (346)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCCGGGCCHHHHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCCCTTSCHHH-H---
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCChHHcCCccHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCCCccccchH-H---
Confidence 568889999999999999999999998888643 4556788899999999999999999999876 32110000 0
Q ss_pred cccCCcHHHHHHHHhc-CCcEEEEecCCcc-------eEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHH
Q 008161 436 KFVHYEPEVIAPLWHE-NLKVLFVTNGTSK-------VHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 436 ~~~~~~~e~~~~L~~~-g~k~VVVT~G~~G-------a~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~ 507 (575)
..+.++.|... |++.||||+|.+| ++++.++...++++ ++++ ++|||||||+|+|||+++|+
T Consensus 222 -----~~~~~~~l~~~~g~~~vvvT~G~~G~~~~~~g~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~ag~~~~l~ 291 (346)
T 3ktn_A 222 -----ETELIQRFMSQYNLEWFAGTTRSHSQNQNYLSGYLYTQNEYQQSEK---RPLL--NLDRIGAGDAYAAGILYGYS 291 (346)
T ss_dssp -----HHHHHHHHHHHHTCSEEEEEEEEECSSCEEEEEEEECSSCEEECCC---EECC--CSCCTTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCCCEEEEecCccccccCcceEEEEECCceEEeCC---Cccc--cCCCCchhHHHHHHHHHHHH
Confidence 13566777764 9999999999998 88887665445544 3344 79999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCCCC
Q 008161 508 VQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDPYG 559 (575)
Q Consensus 508 ~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~~~ 559 (575)
+| +++++|+++|+++|+++|++.|+.+ +|++++|+++|++.+..
T Consensus 292 ~g-------~~l~~a~~~A~a~aa~~v~~~G~~~-~p~~~ev~~~l~~~~~~ 335 (346)
T 3ktn_A 292 QN-------WSLEKAVTFATVNGVLAHTIQGDIP-LTTVKQVNHVLEHPNID 335 (346)
T ss_dssp TT-------CCHHHHHHHHHHHHHHHTTSSSSCC-CCCHHHHHHHHHCTTCC
T ss_pred cC-------CCHHHHHHHHHHHHHHHhccCCCCC-CCCHHHHHHHHhcCCce
Confidence 99 9999999999999999999999986 99999999999766543
No 7
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=100.00 E-value=7.7e-45 Score=378.07 Aligned_cols=313 Identities=17% Similarity=0.151 Sum_probs=251.9
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
.+++|+|||++++|++..... ..+. ..+. .....+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 4 ~~~~v~~iG~~~~D~~~~~~~--~~~~------~~~~-~p~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~ 74 (325)
T 3h49_A 4 DNLDVICIGAAIVDIPLQPVS--KNIF------DVDS-YPLERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQF 74 (325)
T ss_dssp -CEEEEEESCCEEEEEECSCC--GGGG------GSSC-CCCSCCCCEEESHHHHHHHHHHHTTCEEEEECEEESSHHHHH
T ss_pred CCCeEEEEChhhheeeccCCC--Cccc------cccc-cchheeEEccCcHHHHHHHHHHHCCCCeEEEEEECCChHHHH
Confidence 457899999999999754321 1100 0000 011456789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHH
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+++.|++.||+++++.+.++.+|++++++++.+|+|++.+...++...+++++++...+..++++|++++........+.
T Consensus 75 i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 154 (325)
T 3h49_A 75 ILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSLASIFNSPLLDGKA 154 (325)
T ss_dssp HHHHHHHHTCBCSSCEEETTSCCCEEEEEECTTSCEEEECCTTSHHHHCCGGGCCGGGGGGCSEEEEEEETTSTTSCHHH
T ss_pred HHHHHHHcCCceeeEEecCCCCCceEEEEECCCCceeEEeccCcccccCChhhcChhhhccCCEEEEecccCCcccCHHH
Confidence 99999999999999988888899999999999999987644445556688888877788999999999864332234577
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcH
Q 008161 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+.++++.++++| .++||++.++.+|.. .+.+.++++++|+|++|+.|+..|+|... ..
T Consensus 155 ~~~~~~~a~~~~-~~~~d~~~~~~~~~~----~~~~~~~l~~~dil~~N~~E~~~l~g~~~-----------------~~ 212 (325)
T 3h49_A 155 LTEIFTQAKARQ-MIICADMIKPRLNET----LDDICEALSYVDYLFPNFAEAKLLTGKET-----------------LD 212 (325)
T ss_dssp HHHHHHHHHHTT-CEEEEEECCCSSCCC----HHHHHHHHTTCSEEECBHHHHHHHHTCSS-----------------HH
T ss_pred HHHHHHHHHhcC-CEEEecCCchhhhhH----HHHHHHHHhhCCEEecCHHHHHHHhCCCC-----------------HH
Confidence 889999999988 577777767667743 34467789999999999999999998642 13
Q ss_pred HHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008161 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
+.++.|...|++.||||+|++|++++.+++..+++++ ++. .++|||||||+|+|||+++|++| +++++|
T Consensus 213 ~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~~-~vvDttGAGDaf~ag~~~~l~~g-------~~~~~a 281 (325)
T 3h49_A 213 EIADCFLACGVKTVVIKTGKDGCFIKRGDMTMKVPAV---AGI-TAIDTIGAGDNFASGFIAALLEG-------KNLREC 281 (325)
T ss_dssp HHHHHHHTTTCSEEEEECTTSCEEEEETTEEEEECCC---SSC-CCSCCTTHHHHHHHHHHHHHHTT-------CCHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCeEEEECCeEEEecCc---CCC-CCcCCCChhHHHHHHHHHHHHcC-------CCHHHH
Confidence 5667777889999999999999999987755555542 321 28999999999999999999999 999999
Q ss_pred HHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCC
Q 008161 523 IKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDP 557 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~ 557 (575)
+++|+++|+++|++.|+..++|++++|+++|++.+
T Consensus 282 ~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~ 316 (325)
T 3h49_A 282 ARFANATAAISVLSVGATTGVKNRKLVEQLLEEYE 316 (325)
T ss_dssp HHHHHHHHHHHHTSSSSSSSCSSSHHHHTC-----
T ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhcc
Confidence 99999999999999999999999999999997654
No 8
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=100.00 E-value=3.5e-44 Score=370.08 Aligned_cols=302 Identities=22% Similarity=0.240 Sum_probs=251.3
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
||+|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 1 m~~i~viG~~~~D~~~~~~---------------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i 65 (309)
T 1v1a_A 1 MLEVVTAGEPLVALVPQEP---------------GHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMV 65 (309)
T ss_dssp CCSEEEESCCEEEEECSSS---------------SCGGGCCEEEEEEECHHHHHHHHHHHHTCCEEEEEEECSSHHHHHH
T ss_pred CCcEEEEccceEEEecCCC---------------CcccchheeeeecCcHHHHHHHHHHHcCCCeEEEEEeCCCHHHHHH
Confidence 6799999999999996321 0111346788899999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEe-cCCccccCCccccchhhhccCcEEEEecccc-cccchHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l-~~~~~~e 361 (575)
++.|++.||++.++.+.++ +|+++++.++.+|++++.+. ..++...++++++....+.++++||++++.+ +++...+
T Consensus 66 ~~~L~~~gv~~~~v~~~~~-~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 144 (309)
T 1v1a_A 66 EERLRAEGVDLTHFRRAPG-FTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARA 144 (309)
T ss_dssp HHHHHHHTCBCTTEEECSS-CCCEEEEEECTTSCEEEEEECTTCSGGGCCTTSSCGGGGTTCSEEEEETTGGGSCHHHHH
T ss_pred HHHHHHcCCCCceEEEcCC-CCEEEEEEECCCCCceEEEeCCCChhhhCCHhhCChhHhcCCCEEEEeCchhccCchHHH
Confidence 9999999999999988877 99999999988888876533 3466777888888777788999999999754 3455678
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+.+..+|. .+...+.+.++++++|+|++|+.|+..|+|..
T Consensus 145 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~-~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~------------------- 204 (309)
T 1v1a_A 145 FSLWAMEEAKRRGVRVSLDVNYRQTLWS-PEEARGFLERALPGVDLLFLSEEEAELLFGRV------------------- 204 (309)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCCTTTSC-HHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSH-------------------
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCcccCC-HHHHHHHHHHHHHhCCEEECcHHHHHHHhCCH-------------------
Confidence 8899999999999999999998877884 34556678889999999999999999998752
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEec-CCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTK-EDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~-~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.+.++ ..|++.||||+|.+|+++ .. +...++++ ++++ ++|||||||+|+|||+++|++| ++++
T Consensus 205 ~~~~~---~~g~~~vvvt~G~~G~~~-~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~~~~ 268 (309)
T 1v1a_A 205 EEALR---ALSAPEVVLKRGAKGAWA-FVDGRRVEGSA---FAVE--AVDPVGAGDAFAAGYLAGAVWG-------LPVE 268 (309)
T ss_dssp HHHHH---HTCCSEEEEECGGGCEEE-EETTEEEECCC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHH---hcCCCEEEEEecCCCeeE-ecCCcEEEeCC---CCCC--cCCCCCchHHHHHHHHHHHHcC-------CCHH
Confidence 02233 569999999999999988 55 32233333 4454 7999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCC
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDP 557 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~ 557 (575)
+|+++|+++|++++++.|+..++|+++++++++.+.+
T Consensus 269 ~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~~~ 305 (309)
T 1v1a_A 269 ERLRLANLLGASVAASRGDHEGAPYREDLEVLLKATQ 305 (309)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTCCCHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCCHHHHHHHHhhcC
Confidence 9999999999999999999888999999999986644
No 9
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=100.00 E-value=1.5e-44 Score=373.62 Aligned_cols=304 Identities=16% Similarity=0.204 Sum_probs=254.7
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
||+|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 1 m~~v~viG~~~~D~~~~~~---------------~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~~ 65 (313)
T 2v78_A 1 MVDVIALGEPLIQFNSFNP---------------GPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNI 65 (313)
T ss_dssp -CCEEEECCCEEEEEESSS---------------SCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHH
T ss_pred CCeEEEECcceEEEecCCC---------------CcccccceeEecCCChHHHHHHHHHHCCCcEEEEEEeCCCHHHHHH
Confidence 6799999999999996321 0112346788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEE--EcCCCCeEEEEe-cCCccccCCccccchhhhccCcEEEEecccc-cccch
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMK--IGKRGRLRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNM 359 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~--vd~~Ger~~~~~-~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l-~~~~~ 359 (575)
++.|++.||++.++.+.++.+|+++++. ++.+|++++.+. ..++...++++++....+.++++||++++.+ +.+..
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~~~g~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 145 (313)
T 2v78_A 66 IEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINENYVRNSRLVHSTGITLAISDNA 145 (313)
T ss_dssp HHHHHHTTCBCTTEEEETTSCCCEEEEEESSSSTTCEEEEEECTTCSGGGCCGGGCCHHHHHTSSEEEEEHHHHHHCHHH
T ss_pred HHHHHHcCCcCceEEEcCCCCceEEEEEEecCCCCCeeEEEeCCcChhHhCChhhCCHHHhcCCCEEEEcCchhhcChHH
Confidence 9999999999999988777799999998 887888877543 3467778888888777788999999998754 23445
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCe--EEeCCHHHHHHhhCCCCCccccccccccccc
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLAD--VIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aD--II~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+.+.++++.++++ +|||+.+..+|.+.+...+.+.++++++| +|++|++|++.|+|...
T Consensus 146 ~~~~~~~~~~a~~~----~~D~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~N~~E~~~l~g~~~-------------- 207 (313)
T 2v78_A 146 KEAVIKAFELAKSR----SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTD-------------- 207 (313)
T ss_dssp HHHHHHHHHHCSSE----EEECCCCGGGSSCHHHHHHHHHHHHHHSCEEEEEECHHHHHHHHSCCC--------------
T ss_pred HHHHHHHHHHHHHh----CcCCcCChhhcCCHHHHHHHHHHHHHhcCeeEEECcHHHHHHHhCCCC--------------
Confidence 67778888877654 89999888888655566677888999999 99999999999998631
Q ss_pred cCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCch
Q 008161 438 VHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 438 ~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.|++.|++.||||+|++|++++.++...++++ ++++ ++|||||||+|+|||+++|++| +
T Consensus 208 ---~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~~~~l~~g-------~ 272 (313)
T 2v78_A 208 ---PDEAYRKYKELGVKVLLYKLGSKGAIAYKDNVKAFKDA---YKVP--VEDPTGAGDAMAGTFVSLYLQG-------K 272 (313)
T ss_dssp ---HHHHHHHHHHTTEEEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------C
T ss_pred ---HHHHHHHHHhCCCCEEEEEECCCCcEEeeCCcEEEeCC---CcCC--ccCCCCchHHHHHHHHHHHHcC-------C
Confidence 13567778888999999999999999987654444444 4454 7999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
++++|+++|+++|+++|++.|+..++|+++++++++++
T Consensus 273 ~~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~ 310 (313)
T 2v78_A 273 DIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNE 310 (313)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSSSTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Confidence 99999999999999999999999889999999998853
No 10
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=6.8e-44 Score=371.38 Aligned_cols=314 Identities=18% Similarity=0.253 Sum_probs=256.4
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
.+++|+|+|++++|++.... ..|. . ....+...+||+++|+|++|++||.++.|+|.||+|.+|++
T Consensus 10 ~~~~i~viG~~~~D~~~~~~---~~~~-------~----~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~ 75 (332)
T 2qcv_A 10 REFDLIAIGRACIDLNAVEY---NRPM-------E----ETMTFSKYVGGSPANIVIGSSKLGLKAGFIGKIADDQHGRF 75 (332)
T ss_dssp CSEEEEEESCCEEEEEESSC---SSCG-------G----GCCCEEEEEESHHHHHHHHHHHTTCCEEEEEEECSSHHHHH
T ss_pred cCCcEEEECcceEEEecCCC---CCCc-------c----ccceeEecCCCHHHHHHHHHHHcCCceEEEEEeCCCHHHHH
Confidence 34689999999999998642 2221 0 23578899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcC-CCCCeEEEEEEcCCCCeEEEEec-CCccccCCccccchhhhccCcEEEEecccccccchH
Q 008161 283 MLYYMNVNNVQTRSVRIDA-KRPTAVSQMKIGKRGRLRMTCVK-PCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~-~~~T~~~~i~vd~~Ger~~~~~~-~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
+++.|++.||+++++.+.+ ..+|+++++.++.+|++++.+.. .++...++++++....++++++||++|+.+......
T Consensus 76 l~~~L~~~gV~~~~v~~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 155 (332)
T 2qcv_A 76 IESYMRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSILMYRQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSR 155 (332)
T ss_dssp HHHHHHHTTCBCTTEEECSSCCCCCEEEEEEEETTEEEEEEECTTCGGGGCCGGGCCHHHHTTEEEEEEEGGGGSSTTHH
T ss_pred HHHHHHHcCCCCcceEecCCCCCceEEEEEEcCCCCccEEEECCcchhhhCCHhHCCHHHHccCCEEEEeCccccCchhH
Confidence 9999999999999998765 46899999887767777765433 346667888888766788999999999754443456
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+.++++.++++|++|+|||+.+..+|...+...+.+..+++++|+|++|++|+..|+|....+ +
T Consensus 156 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~--~------------ 221 (332)
T 2qcv_A 156 EAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKG--D------------ 221 (332)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHHHCSEEEEEHHHHHHHTTCSSCC--C------------
T ss_pred HHHHHHHHHHHHCCCEEEEcCcCchhhcCCHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCcCC--C------------
Confidence 78889999999999999999998877886655566778889999999999999999999864311 0
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEec-CCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTK-EDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~-~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
..+.++.|++.|++.||||+|++|++++++ +...++++ ++++ ++|||||||+|+|||+++|++| +++
T Consensus 222 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~v~--vvdt~GAGDaf~a~~~~~l~~g-------~~~ 289 (332)
T 2qcv_A 222 NDETIRYLFKHSPELIVIKHGVEGSFAYTKAGEAYRGYA---YKTK--VLKTFGAGDSYASAFLYALISG-------KGI 289 (332)
T ss_dssp HHHHHHHHTTSSCSEEEEECGGGCEEEEETTSCEEEECC---BCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCH
T ss_pred HHHHHHHHHHcCCCEEEEEECCcceEEEecCCceEEcCC---CCcc--ccCCCCcHHHHHHHHHHHHHcC-------CCH
Confidence 236677888889999999999999999987 43344544 3444 7999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCC
Q 008161 520 VRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPD 556 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~ 556 (575)
++|+++|+++|+++|++.|+..++|++++|++++.+.
T Consensus 290 ~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~ 326 (332)
T 2qcv_A 290 ETALKYGSASASIVVSKHSSSDAMPSVEEIEALIEKD 326 (332)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCCCccCCCCHHHHHHHHhcC
Confidence 9999999999999999999988899999999998653
No 11
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=100.00 E-value=9.1e-44 Score=367.89 Aligned_cols=297 Identities=22% Similarity=0.312 Sum_probs=251.8
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
||+|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 1 M~~v~viG~~~iD~~~~~~---------------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i 65 (313)
T 3ewm_A 1 MSLIASIGELLIDLISVEE---------------GDLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYL 65 (313)
T ss_dssp -CEEEEESCCEEEEEESSS---------------SCTTTCCEEEEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHH
T ss_pred CCcEEEECceeeeeecCCC---------------CCcccccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCCHHHHHH
Confidence 7899999999999997531 1112346788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
++.|++.||+++++.+.++.+|+++++.++. |++++......+...+++++++...+..++++|++++.+..+...+.+
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~~T~~~~~~~~~-g~~~~~~~~~~a~~~l~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~ 144 (313)
T 3ewm_A 66 IEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLYDDVAYFNMTLNDINWDIVEEAKIVNFGSVILARNPSRETV 144 (313)
T ss_dssp HHHHHHTTCBCTTEEEESSSCCEEEEEECSS-SSCEEEECCSSGGGCCCGGGCCHHHHHHCSEEEEESGGGGSTTHHHHH
T ss_pred HHHHHHcCCCccceeecCCCCceEEEEEecC-CCcceEeeccCHHHhCChhhCCHHHhCCCCEEEEcCcccCCcchHHHH
Confidence 9999999999999988888899999988865 888887554446678888888877888999999999765445567888
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCcccc-ChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcH
Q 008161 364 LQAIKISKQFGGIIFYDVNLPLPLWQ-SGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 364 ~~ll~~ak~~G~~Vv~D~~~~~~l~~-~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
.++++.++ .+++|+|||+.+..+|. ..+...+.+.++++++|++++|++|++.|++....
T Consensus 145 ~~~~~~a~-~~~~v~~Dp~~~~~~~~~~~~~~~~~~~~~l~~~di~~~N~~E~~~l~~~~~~------------------ 205 (313)
T 3ewm_A 145 MKVIKKIK-GSSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVE------------------ 205 (313)
T ss_dssp HHHHHHHB-TTBEEEEECCCCGGGGTTCHHHHHHHHHHHHHHCSEEEEEHHHHHHHHTTTCC------------------
T ss_pred HHHHHHhc-cCCEEEEeCCCChHHcCCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhccCcc------------------
Confidence 99999988 57999999998888886 34556677888999999999999999999875321
Q ss_pred HHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHH--cCCCCCCCchhHH
Q 008161 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT--VQPHLITDKGYLV 520 (575)
Q Consensus 443 e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~--~g~~~~~d~~sl~ 520 (575)
..+...||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|+ +| ++++
T Consensus 206 -------~~~~~~vviT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaf~a~~~~~l~~~~g-------~~l~ 266 (313)
T 3ewm_A 206 -------VKGSMLTAITLGPKGCRLIKNETVVDVPS---YNVN--PLDTTGAGDAFMAALLVGILKLKG-------LDLL 266 (313)
T ss_dssp -------CCCSSEEEEECGGGEEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHHHSSS-------CCHH
T ss_pred -------ccCceEEEEEECCCCeEEEECCeeEEcCC---CCcc--cCCCCCchHHHHHHHHHHHHhcCC-------CCHH
Confidence 12456799999999999998876555554 3454 89999999999999999999 99 9999
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+|+++|+++|+++|++.|+.. +|++++|+++++.
T Consensus 267 ~a~~~A~~~aa~~v~~~G~~~-~p~~~ev~~~l~~ 300 (313)
T 3ewm_A 267 KLGKFANLVAALSTQKRGAWS-TPRKDELLKYKEA 300 (313)
T ss_dssp HHHHHHHHHHHHHTTSCSSCC-CCCHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHH
Confidence 999999999999999999964 9999999999854
No 12
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=100.00 E-value=1.4e-44 Score=378.77 Aligned_cols=309 Identities=23% Similarity=0.386 Sum_probs=247.9
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
++|++|+|+|++++|++... ...+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 22 ~~m~~ilviG~~~~D~~~~~---------------------~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~ 80 (339)
T 1tyy_A 22 KAMNKVWVIGDASVDLVPEK---------------------QNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGR 80 (339)
T ss_dssp ---CCEEEESCCEEEEEECS---------------------SSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHH
T ss_pred cccCCEEEECcceeEEeccC---------------------CCceEEcCCCHHHHHHHHHHHcCCCeEEEEeeCCCHHHH
Confidence 34558999999999999752 145678999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEe-cCCccccCCccccchhhhccCcEEEEecccccccchH
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
++++.|++.||++.++.+.++.+|+++++.++.+|+|++.+. ..++...++++ ....+..+++||++++.+..+...
T Consensus 81 ~i~~~L~~~gVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~--~~~~l~~~~~v~~~~~~l~~~~~~ 158 (339)
T 1tyy_A 81 FLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQ--DLPPFRQYEWFYFSSIGLTDRPAR 158 (339)
T ss_dssp HHHHHHHTTTEECTTEEECTTSCCCEEEEC-------CEEECCSSCGGGGCCGG--GCCCCCTTCEEEEEHHHHSSHHHH
T ss_pred HHHHHHHHcCCCchheEecCCCCCeEEEEEEcCCCCeEEEEecCCChhhhCCcc--hhhHhccCCEEEEcchhhcCcccH
Confidence 999999999999999988778899999998888888876543 33565566554 234578899999998765555567
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+.++++.++++|++|+|||+.+..+|...+.+.+.+.++++++|+|++|++|+..|+|....
T Consensus 159 ~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~---------------- 222 (339)
T 1tyy_A 159 EACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHW---------------- 222 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCGGGCSCGGGHHHHHHHHHHHCSEEEEEHHHHHHHHCCSSG----------------
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCccccCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCH----------------
Confidence 8889999999999999999999888888755556777888999999999999999999986421
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.+.++.|++.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++|+. .+..+++
T Consensus 223 -~~~~~~l~~~g~~~VvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~~~~l~~g~~--~~~~~l~ 294 (339)
T 1tyy_A 223 -QDARYYLRDLGCDTTIISLGADGALLITAEGEFHFPA---PRVD--VVDTTGAGDAFVGGLLFTLSRANC--WDHALLA 294 (339)
T ss_dssp -GGGSSTTGGGTCSCEEEECGGGCEEEESSSCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHTTSSS--CCHHHHH
T ss_pred -HHHHHHHHHcCCCEEEEEECCCceEEEeCCceEEcCC---CCCC--cCCCCCchHHHHHHHHHHHHhccc--cccccHH
Confidence 1334456677999999999999999998765445554 3454 899999999999999999998410 1127999
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCC
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDP 557 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~ 557 (575)
+|+++|+++|+++|++.|+..++|++++|++++++..
T Consensus 295 ~a~~~A~a~aa~~v~~~G~~~~~p~~~ev~~~l~~~~ 331 (339)
T 1tyy_A 295 EAISNANACGAMAVTAKGAMTALPFPDQLNTFLSSHS 331 (339)
T ss_dssp HHHHHHHHHHHHGGGSSSTTTTCCCHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhcCc
Confidence 9999999999999999999888999999999997655
No 13
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=100.00 E-value=1.1e-43 Score=366.59 Aligned_cols=302 Identities=16% Similarity=0.245 Sum_probs=253.3
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
|++|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 1 m~~v~viG~~~~D~~~~~~---------------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i 65 (311)
T 2dcn_A 1 MAKLITLGEILIEFNALSP---------------GPLRHVSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNA 65 (311)
T ss_dssp -CEEEEESCCEEEEEESSS---------------SCGGGCCEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHH
T ss_pred CCCEEEECCceEEEecCCC---------------CcccccceeeecCCChHHHHHHHHHHCCCceEEEEEeCCCHHHHHH
Confidence 5789999999999997321 0112346788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCC--eEEEEe-cCCccccCCccccchhhhccCcEEEEecccc-cccch
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGR--LRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNM 359 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ge--r~~~~~-~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l-~~~~~ 359 (575)
++.|++.||+++++.+.++.+|+++++.++.+|+ +++.+. ..++...++++++....+.++++||++++.+ +.+..
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 145 (311)
T 2dcn_A 66 IEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAISSTA 145 (311)
T ss_dssp HHHHHHTTCBCTTCEEETTSCCCEEEEEESCSSTTCEEEEEECTTCTGGGCCGGGCCHHHHTTCSEEEEEHHHHHSCHHH
T ss_pred HHHHHHcCCCcceEEEcCCCCceEEEEEECCCCCccceEEEecCcChhhhCChhhcChHHHcCCCEEEEeCcccccChHH
Confidence 9999999999999988777899999999988888 777543 3467778888888777788999999998754 24445
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc--cCeEEeCCHHHHHHhhCCCCCccccccccccccc
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+.+.++++.++++ +|||+.+..+|. .+...+.+..+++ ++|+|++|++|++.|+|...
T Consensus 146 ~~~~~~~~~~a~~~----~~D~~~~~~~~~-~~~~~~~~~~~l~~~~~dil~~N~~E~~~l~g~~~-------------- 206 (311)
T 2dcn_A 146 KEAVYKAFEIASNR----SFDTNIRLKLWS-AEEAKREILKLLSKFHLKFLITDTDDSKIILGESD-------------- 206 (311)
T ss_dssp HHHHHHHHHHCSSE----EEECCCCTTTSC-HHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHSCCC--------------
T ss_pred HHHHHHHHHHHHHh----CcCccCchhhCC-hHHHHHHHHHHHhhcCCcEEECCHHHHHHHhCCCC--------------
Confidence 67788888887754 899998878885 4445667788999 99999999999999998631
Q ss_pred cCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCch
Q 008161 438 VHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 438 ~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.|++. ++.||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|++| +
T Consensus 207 ---~~~~~~~l~~~-~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~ 270 (311)
T 2dcn_A 207 ---PDKAAKAFSDY-AEIIVMKLGPKGAIVYYDGKKYYSSG---YQVP--VEDVTGAGDALGGTFLSLYYKG-------F 270 (311)
T ss_dssp ---HHHHHHHHTTT-EEEEEEEEETTEEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHTTT-------C
T ss_pred ---HHHHHHHHHHh-CCEEEEEECCCCcEEEeCCcEEEeCC---cccc--ccCCCCchHHHHHHHHHHHHcC-------C
Confidence 13567778777 89999999999999998765445554 3454 7999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
++++|+++|+++|+++|++.|+..++|+++++++++.+
T Consensus 271 ~~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~ 308 (311)
T 2dcn_A 271 EMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLRE 308 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Confidence 99999999999999999999999889999999998753
No 14
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-43 Score=364.42 Aligned_cols=301 Identities=19% Similarity=0.220 Sum_probs=251.9
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
|++|+|+|++++|++... +++|.+ .+.......+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 2 m~~v~viG~~~~D~~~~~---~~~p~~------g~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~~~~vG~D~~g~~i 72 (304)
T 3ry7_A 2 TNKVVILGSTNVDQFLTV---ERYAQP------GETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFI 72 (304)
T ss_dssp CCEEEEECCCEEEEEEEC---SSCCCT------TCCCCCSSCCEEEEECHHHHHHHHHHHTTCEEEEECEEESSCTTHHH
T ss_pred CCcEEEEccceeEEEEec---cCCCCC------CCceecccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCChHHHHH
Confidence 678999999999999875 455531 11111346788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||+++++.+.++.+|++++++++.+|++++. ..+++...+++++++ .+.++.++++|+++. .+.+
T Consensus 73 ~~~l~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~-~~~ga~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~ 146 (304)
T 3ry7_A 73 LEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIY-VYGGANMTMTPEDVINAKDAIINADFVVAQLE-----VPIP 146 (304)
T ss_dssp HHHHHHTTCBCTTCEEESSSCCEEEEEEECSSCCEEEE-EECGGGGGCCHHHHHTTHHHHHTCSEEEEETT-----SCHH
T ss_pred HHHHHHcCCcchhEEEcCCCCCcEEEEEECCCCCEEEE-EecCchhcCCHHHHHHHHHHhccCCEEEEcCC-----CCHH
Confidence 99999999999999888888999999999988998875 457787888888775 246889999999852 3567
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+.... .+..+++++|+|++|.+|+..|+|....+..+ .
T Consensus 147 ~~~~~~~~a~~~~~~v~~D~~~~~~----------~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~------------~ 204 (304)
T 3ry7_A 147 AIISAFEIAKAHGVTTVLNPAPAKA----------LPNELLSLIDIIVPNETEAELLSGIKVTNEQS------------M 204 (304)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCCC----------CCHHHHTTCSEECCBHHHHHHHHSCCCCSHHH------------H
T ss_pred HHHHHHHHHHHcCCEEEEeCCcccc----------ccHHHHHhCCEEecCHHHHHHHhCCCCCChhH------------H
Confidence 8889999999999999999875322 24567889999999999999999976432211 1
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
.+.++.|++.|++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|+ +++++
T Consensus 205 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vdttGAGDaf~a~~~~~l~~g~------~~~~~ 273 (304)
T 3ry7_A 205 KDNANYFLSIGIKTVLITLGKQGTYFATKNQSQHIEA---YKVN--AIDTTAAGDTFIGAFVSRLNKSQ------DNLAD 273 (304)
T ss_dssp HHHHHHHHHTTCCEEEEECGGGCEEEECSSCEEEECC---SSCC--SSCCSSHHHHHHHHHHHHCCTTC------TTHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCCceEEEECCeeEEecC---CCcc--cCCCCCchHHHHHHHHHHHHcCC------CCHHH
Confidence 3567788888999999999999999998776555554 3444 79999999999999999999872 58999
Q ss_pred HHHHHHHHHHHHccccccCCCCCCHHHHHhh
Q 008161 522 TIKYAIDCGVRDQWSQARTLGYPPKGGMEEE 552 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~~pt~eeve~~ 552 (575)
|+++|+++|+++|++.|+.+++|+++||+++
T Consensus 274 a~~~A~~~aa~~~~~~G~~~~~p~~~ev~~~ 304 (304)
T 3ry7_A 274 AIDFGNKASSLTVQKHGAQASIPLLEEVNQV 304 (304)
T ss_dssp HHHHHHHHHHTTSCCCCTGGGCCCHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCccccCCCHHHHhhC
Confidence 9999999999999999999899999999874
No 15
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=100.00 E-value=3.2e-43 Score=362.67 Aligned_cols=303 Identities=17% Similarity=0.235 Sum_probs=251.1
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
+|++|+|+|++++|++... +++|.+ .+ ......+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 3 ~~~~v~viG~~~iD~~~~~---~~~p~~------g~-~~~~~~~~~~~GG~~~N~A~~la~lG~~~~~~~~vG~D~~g~~ 72 (309)
T 1rkd_A 3 NAGSLVVLGSINADHILNL---QSFPTP------GE-TVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGES 72 (309)
T ss_dssp -CCEEEEECCCEEEEEEEC---SSCCCT------TC-CCCCCCEEEEEECHHHHHHHHHHHHTCEEEEEEEEESSTTHHH
T ss_pred CCCeEEEECcceEeEEEec---CCCCCC------CC-eeecCceeecCCCHHHHHHHHHHhCCCceEEEEEECCCHHHHH
Confidence 4678999999999999875 345531 11 2234678899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch--hhhccCcEEEEecccccccchH
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~--~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
+++.|++.||++.++.+.++.+|++++++++.+|++++. ..++++..+++++++. ..+..++++|+++. .+.
T Consensus 73 i~~~L~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~-----~~~ 146 (309)
T 1rkd_A 73 VRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIG-IHAGANAALSPALVEAQRERIANASALLMQLE-----SPL 146 (309)
T ss_dssp HHHHHHTTTEECTTEEEETTCCCEEEEEEECTTSCEEEE-EECGGGGGCCHHHHHTTHHHHHHCSEEEECSS-----SCH
T ss_pred HHHHHHHcCCCccceEecCCCCCceEEEEECCCCCeEEE-EeCCchhcCCHHHHHHHHHhcccCCEEEEeCC-----CCH
Confidence 999999999999999887778999999999988998875 4567777788877752 46788999999753 234
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCC
Q 008161 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+..+++.++++|++|+|||+.... | ...+++++|+|++|..|++.|+|....+..+
T Consensus 147 ~~~~~~~~~a~~~g~~v~~D~~~~~~-~---------~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~------------ 204 (309)
T 1rkd_A 147 ESVMAAAKIAHQNKTIVALNPAPARE-L---------PDELLALVDIITPNETEAEKLTGIRVENDED------------ 204 (309)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCSCCC-C---------CHHHHTTCSEECCCHHHHHHHHSCCCSSHHH------------
T ss_pred HHHHHHHHHHHHcCCEEEEECCcccc-c---------hHHHHhhCCEEEcCHHHHHHHhCCCCCCHHH------------
Confidence 67888899999999999999986532 2 2357789999999999999999875422111
Q ss_pred cHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHH
Q 008161 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..+.++.|++.|++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++++
T Consensus 205 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vdt~GAGD~f~a~~~~~l~~g-------~~~~ 272 (309)
T 1rkd_A 205 AAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPG---FRVQ--AVDTIAAGDTFNGALITALLEE-------KPLP 272 (309)
T ss_dssp HHHHHHHHHHTTCSEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCCcEEEEeCCceEEcCC---CCCC--cCCCCChHHHHHHHHHHHHHcC-------CCHH
Confidence 13567778888999999999999999988765444443 3444 7999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 521 RTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+|+++|+++|++++++.|+..++|++++|++++++
T Consensus 273 ~a~~~a~~~aa~~~~~~G~~~~~p~~~ev~~~~~~ 307 (309)
T 1rkd_A 273 EAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDR 307 (309)
T ss_dssp HHHHHHHHHHHHHHTSSSSGGGCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCccCCCCCHHHHHHHHhc
Confidence 99999999999999999998889999999999853
No 16
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=100.00 E-value=1.3e-43 Score=369.36 Aligned_cols=308 Identities=14% Similarity=0.149 Sum_probs=254.5
Q ss_pred cCCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHH
Q 008161 201 YGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYG 280 (575)
Q Consensus 201 ~~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G 280 (575)
.+++++|+|||++++|++.... .+|. ..+.. ...+...+||+++|+|++|++||.++.++|.||+|.+|
T Consensus 3 ~~~~~~v~viG~~~vD~~~~~~---~~~~------~g~~~--~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~D~~g 71 (328)
T 3kzh_A 3 LRKEPYLLVFGASVVDVFGFSK---ASYR------PYNST--PGHVKISFGGVCRNIAENMARVGVNTNFMSILGNDEHG 71 (328)
T ss_dssp -CCCCCEEEECCCEEEEEEEES---SCCC------TTSEE--EEEEEEEEECHHHHHHHHHHHTTCCEEEECEECSSHHH
T ss_pred CCCCCcEEEECcEEeeeeeccC---CCCC------CCCCc--eEEEEEccCcHHHHHHHHHHHcCCCcEEEEEecCcHHH
Confidence 3677899999999999998763 3332 11211 13678999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccc
Q 008161 281 QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERN 358 (575)
Q Consensus 281 ~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~ 358 (575)
+.+++.|++.||+++++.+.++.+|++++++++.+|++.+.+..+++...++++.+. ...+..++++++++..
T Consensus 72 ~~i~~~L~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 146 (328)
T 3kzh_A 72 KSIVEHSKKIGYHMDDSMVIEGGSTPTYLAILDENGEMVSAIADMKSIGAMNTDFIDSKREIFENAEYTVLDSDN----- 146 (328)
T ss_dssp HHHHHHHHHHTEECTTCEECTTCCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHHHTHHHHHTCSEEEEESSC-----
T ss_pred HHHHHHHHHcCCCccceEEeCCCCCeeEEEEEcCCCCEEEEEEchhhhhhCCHHHHHHHHHhhccCCEEEEeCCc-----
Confidence 999999999999999988888889999999999999988766667777777777664 3568899999998631
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccccccc
Q 008161 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 359 ~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
+ +.+..+++ +++.|++|+|||+... ..+.+..+++++|+|++|++|+..|+|....+..+
T Consensus 147 ~-~~~~~l~~-a~~~~~~v~~D~~~~~--------~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~---------- 206 (328)
T 3kzh_A 147 P-EIMEYLLK-NFKDKTNFILDPVSAE--------KASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDD---------- 206 (328)
T ss_dssp H-HHHHHHHH-HHTTTSEEEEECCSHH--------HHHTSTTTGGGCSEECCBHHHHHHHHTSCCCSHHH----------
T ss_pred H-HHHHHHHH-HhhcCCcEEEEeCCHH--------HHHHHHHHhcCCcEEeCCHHHHHHHHCCCCCCHHH----------
Confidence 2 56666666 7889999999986321 12345678899999999999999999976432211
Q ss_pred CCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchh
Q 008161 439 HYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 439 ~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.|++.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 207 --~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~ag~~~~l~~g-------~~ 272 (328)
T 3kzh_A 207 --LIKASNYFLGLGIKKVFISLDADGIFYNDGVSCGKIKA---TEVD--VKNVTGAGDSFVAGLGYGYMNK-------MP 272 (328)
T ss_dssp --HHHHHHHHHHHTCCEEEEECGGGCEEEECSSCEEEEEE---SSCC--CSCCTTHHHHHHHHHHHHHHTT-------CC
T ss_pred --HHHHHHHHHHhCCCEEEEEeCCCCEEEEeCCceEEecC---CCcc--cCCCCChhHHHHHHHHHHHHcC-------CC
Confidence 13567778888999999999999999998876666665 3454 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCCC
Q 008161 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDPY 558 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~~ 558 (575)
+++|+++|+++|+++|++.|+..+.|+++++++++++...
T Consensus 273 ~~~a~~~A~a~aa~~v~~~G~~~~~~~~~~v~~~~~~~~~ 312 (328)
T 3kzh_A 273 IEDIVKFAMTMSNITISHEETIHPDMALDTVLAKLEKTTW 312 (328)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCTTCSHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHhhhcch
Confidence 9999999999999999999999999999999999987643
No 17
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=100.00 E-value=1.8e-43 Score=372.42 Aligned_cols=312 Identities=18% Similarity=0.150 Sum_probs=255.8
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCc------c-------hhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCe
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRL------I-------DHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKV 268 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~l------p-------~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v 268 (575)
+.+++|+|||++++|++..+.. .+ + +++.+.++.+.+ ......+||++.|+|++|++||.++
T Consensus 23 m~~~~v~~iG~~~vD~~~~v~~--~~l~~~~l~~g~~~li~~~~~~~l~~~~---~~~~~~~GG~~~N~A~~la~LG~~~ 97 (352)
T 4e3a_A 23 MTRFDVLTVGNAIVDIISRCND--QFLIDNQITKAAMNLIDAERAELLYSRM---GPALEASGGSAGNTAAGVANLGGKA 97 (352)
T ss_dssp CCSEEEEEECCCEEEEEEECCH--HHHHHTTCCTTSEEECCHHHHHHHHHHS---CSCEEEECCHHHHHHHHHHHHTCCE
T ss_pred CCcccEEEECCceeeEEEecCH--HHHHHcCCCCCcceEeCHHHHHHHHHHh---hhccEecCCHHHHHHHHHHHcCCCe
Confidence 3457899999999999987631 11 1 112222222222 2456899999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEE
Q 008161 269 AFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFY 348 (575)
Q Consensus 269 ~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~ 348 (575)
.|+|.||+|.+|+++++.|++.||++.++.+.++.+|+.++++++++|+|++. .+.++...++++++....+..++++|
T Consensus 98 ~~ig~vG~D~~G~~l~~~l~~~GV~~~~~~~~~~~~T~~~~v~v~~~g~r~~~-~~~ga~~~l~~~~~~~~~~~~~~~v~ 176 (352)
T 4e3a_A 98 AYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTARSMIFVTEDGERSMN-TYLGACVELGPEDVEADVVADAKVTY 176 (352)
T ss_dssp EEECCCCSSHHHHHHHHHHHHTTCEECCCCCCSSSCCEEEEEEECTTSCEEEE-EECGGGGGCCGGGCCHHHHHTEEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHcCCccceeeccCCCCCeEEEEEEcCCCceEEE-eccChhhcCChhhCCHHHHhhCCEEE
Confidence 99999999999999999999999999998877777999999999999999875 45788888999999888899999999
Q ss_pred EecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc--cCeEEeCCHHHHHHhhCCCCCcc
Q 008161 349 FSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELEFLCGIKPTEE 426 (575)
Q Consensus 349 ~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDII~~N~~Ea~~L~g~~~~~~ 426 (575)
++|+.+..+...+.+.++++.++++|++|+||++.+. + .+...+.+.++++ ++|+|++|++|+..|+|...
T Consensus 177 ~~G~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--~--~~~~~~~l~~ll~~~~~dil~~N~~Ea~~l~g~~~--- 249 (352)
T 4e3a_A 177 FEGYLWDPPRAKEAILDCARIAHQHGREMSMTLSDSF--C--VDRYRGEFLDLMRSGKVDIVFANRQEALSLYQTDD--- 249 (352)
T ss_dssp EEGGGGSSSSHHHHHHHHHHHHHHTTCEEEEECCCHH--H--HHHHHHHHHHHHHTTSCCEEEEEHHHHHHHTTCSC---
T ss_pred EeeeecCCchHHHHHHHHHHHHHHcCCEEEEECCchh--h--HHHHHHHHHHHhcccCCcEEEeCHHHHHHHhCCCC---
Confidence 9998655566788899999999999999999986321 1 2334566788898 99999999999999998631
Q ss_pred ccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHH
Q 008161 427 FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRML 506 (575)
Q Consensus 427 ~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L 506 (575)
..++++.|. .+++.||||+|++|++++.+++..++++ +++. .++|||||||+|+|||+++|
T Consensus 250 --------------~~~a~~~l~-~~~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~-~vvDttGAGDaF~agfl~~l 310 (352)
T 4e3a_A 250 --------------FEEALNRIA-ADCKIAAVTMSENGAVILKGRERYYVNA---IRIR-EVVDTTGAGDLFASGFLYGY 310 (352)
T ss_dssp --------------HHHHHHHHH-HHSSEEEEECGGGCEEEEETTEEEEECC---CCCS-CCSCCTTHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHh-cCCCEEEEEECCCceEEEECCEEEEECC---ccCC-CCcCCCChHHHHHHHHHHHH
Confidence 124445444 4789999999999999998775555554 3442 27999999999999999999
Q ss_pred HcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhh
Q 008161 507 TVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEE 552 (575)
Q Consensus 507 ~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~ 552 (575)
++| +++++|+++|+++|+++|++.|+.+.+|.++.+++.
T Consensus 311 ~~g-------~~l~~a~~~A~~aAa~~v~~~G~~~~~~~~~~~~~~ 349 (352)
T 4e3a_A 311 TQG-------RSLEDCGKLGCLAAGIVIQQIGPRPMTSLSEAAKQA 349 (352)
T ss_dssp HTT-------CCHHHHHHHHHHHHHHHTTSSSSSCSSCHHHHHHHT
T ss_pred HcC-------CCHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHh
Confidence 999 999999999999999999999999999888887754
No 18
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=100.00 E-value=1.8e-43 Score=366.60 Aligned_cols=289 Identities=21% Similarity=0.233 Sum_probs=240.4
Q ss_pred CcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcC----CCeEEEEEeCCChHH
Q 008161 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLG----GKVAFMGKLGDDEYG 280 (575)
Q Consensus 205 ~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG----~~v~lvg~VG~D~~G 280 (575)
++|+|||++++|++... ..+...+||+++|+|++|++|| .++.|+|.||+|.+|
T Consensus 5 ~~i~viG~~~~D~~~~~----------------------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~~ig~vG~D~~G 62 (319)
T 3lhx_A 5 KKIAVIGECMIELSEKG----------------------ADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFS 62 (319)
T ss_dssp EEEEEESCCEEEEEC-------------------------CCEEEEECHHHHHHHHHHTTSCTTTEEEEEECEECSSHHH
T ss_pred CceeeechhhhhhccCC----------------------CceEEecCChHHHHHHHHHHcCCCCCCcEEEEEEeCCCHHH
Confidence 57999999999998643 3456889999999999999999 899999999999999
Q ss_pred HHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCC--ccccCCccccc--hhhhccCcEEEEecccc--
Q 008161 281 QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPC--AEDALTKSEIN--IDVLKEAKMFYFSTHSM-- 354 (575)
Q Consensus 281 ~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~g--a~~~lt~e~i~--~~~l~~ad~v~~sg~~l-- 354 (575)
+++++.|++.||+++++.+.++.+|+++++.++.+|+|++.+.... +...+++++++ .+.+..+++||++|+.+
T Consensus 63 ~~l~~~L~~~GV~~~~v~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~ 142 (319)
T 3lhx_A 63 QQMLDAWHGENVDTSLTQRMENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLASEQSAAICEELANFDYLYLSGISLAI 142 (319)
T ss_dssp HHHHHHHHTTTEECTTCEECTTCCCCEEEEEC----CCEEEEECTTCGGGGTTSSSSHHHHHHHHTTCSEEEEEHHHHHT
T ss_pred HHHHHHHHHcCCCcceEEEcCCCCceEEEEEeCCCCCeeEEEecCCCHHHhccCccchhhHHHHhcCCCEEEEcCchhhh
Confidence 9999999999999999988888899999999988899987644332 23345555443 35688999999998643
Q ss_pred cccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccc
Q 008161 355 LERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 355 ~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
+++...+.+.++++.++++|++|+|||+.+..+|...+...+.+..+++++|+|++|..|++.|+|...
T Consensus 143 l~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~di~~~n~~E~~~l~g~~~----------- 211 (319)
T 3lhx_A 143 LSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQP----------- 211 (319)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEEEHHHHHHHHCCCC-----------
T ss_pred cCchhHHHHHHHHHHHHhcCCEEEEeCcCCcccccCHHHHHHHHHHHHhhCCcccCCHHHHHHHhCCCC-----------
Confidence 345567888999999999999999999988888876667778888999999999999999999998631
Q ss_pred ccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCe-eEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCC
Q 008161 435 SKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDG-AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI 513 (575)
Q Consensus 435 ~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~-~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~ 513 (575)
..+.++.|.+.|++.||||+|.+|++++.+++.. +++++..++++ ++|||||||+|+|||+++|++|
T Consensus 212 ------~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~--vvdttGAGDaf~a~~~~~l~~g---- 279 (319)
T 3lhx_A 212 ------VEDVIARTHNAGVKEVVVKRGADSCLVSIAGEALVDVPAVKLPKEK--VIDTTAAGDSFSAGYLAVRLTG---- 279 (319)
T ss_dssp ------HHHHHHHHHHTTCSEEEEEETTEEEEEEETTSCCEEECCCCCCGGG--CCCCTTHHHHHHHHHHHHHTTT----
T ss_pred ------HHHHHHHHHhcCCCEEEEEECCCCeEEEECCcceEEcccccCCCCc--cCCCCCccHHHHHHHHHHHHcC----
Confidence 2366788888899999999999999999887654 56553212333 7999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHccccccCC
Q 008161 514 TDKGYLVRTIKYAIDCGVRDQWSQARTL 541 (575)
Q Consensus 514 ~d~~sl~eAl~~A~aaAA~~v~~~G~~~ 541 (575)
+++++|+++|+++|+++|++.|+..
T Consensus 280 ---~~~~~a~~~A~~~aa~~v~~~Ga~~ 304 (319)
T 3lhx_A 280 ---GSAENAAKRGHLTASTVIQYRGAII 304 (319)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSSSSSC
T ss_pred ---CCHHHHHHHHHHHHHhhhccCCCcC
Confidence 9999999999999999999999963
No 19
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=100.00 E-value=4.2e-43 Score=365.93 Aligned_cols=295 Identities=19% Similarity=0.255 Sum_probs=249.5
Q ss_pred ccccCCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHc--CCCeEEEEEeC
Q 008161 198 SFTYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARL--GGKVAFMGKLG 275 (575)
Q Consensus 198 ~~~~~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarL--G~~v~lvg~VG 275 (575)
-|.+..|++|+|||++++|++.... ...+...+||+++|+|++|++| |.++.++|.||
T Consensus 17 ~y~~~~m~~i~viG~~~iD~~~~~~--------------------~~~~~~~~GG~~~NvA~~la~Lg~G~~~~~ig~vG 76 (328)
T 4e69_A 17 NLYFQSMMHILSIGECMAELAPADL--------------------PGTYRLGFAGDTFNTAWYLARLRPESRISYFSAIG 76 (328)
T ss_dssp CSSCBSSCEEEEESCCEEEEEECSS--------------------TTEEEEEEECHHHHHHHHHHHHCTTSEEEEECEEC
T ss_pred ccccccCCcEEEecCcEEEEecCCC--------------------CCceEEecCCHHHHHHHHHHhcCCCCcEEEEEeeC
Confidence 3888999999999999999997520 1467789999999999999999 89999999999
Q ss_pred CChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCC-cc-ccCCccccchhhhccCcEEEEeccc
Q 008161 276 DDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPC-AE-DALTKSEINIDVLKEAKMFYFSTHS 353 (575)
Q Consensus 276 ~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~g-a~-~~lt~e~i~~~~l~~ad~v~~sg~~ 353 (575)
+|.+|+++++.|++.||+++++.+.++.+|+++++.++ +|+|++.+.... +. ..++..++....+..+++||++|+.
T Consensus 77 ~D~~G~~l~~~L~~~GV~~~~v~~~~~~~T~~~~v~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 155 (328)
T 4e69_A 77 DDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITLE-QGERSFAYWRGQSAARELAGDADALAAAMARADVVYFSGIT 155 (328)
T ss_dssp SSHHHHHHHHHHHHTTEECTTCEECTTCCCEEEEEEEE-TTEEEEEEECTTCGGGGTTSCHHHHHHHHTTCSEEEEEHHH
T ss_pred CCHHHHHHHHHHHHcCCccceEEEcCCCCCeEEEEEec-CCceEEEEeCCCCHHHhhcCccccchHHhcCCCEEEECCch
Confidence 99999999999999999999998888889999999998 899887643322 22 2334444445678899999999863
Q ss_pred --ccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccc
Q 008161 354 --MLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKN 431 (575)
Q Consensus 354 --l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~ 431 (575)
++++...+.+.++++.+++.|++|+|||++++.+|...+...+.+.++++++|+|++|..|++.|+|...
T Consensus 156 ~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~-------- 227 (328)
T 4e69_A 156 LAILDQCGRATLLRALAQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGDAG-------- 227 (328)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGCSCHHHHHHHHHHHHTTCSEECCBHHHHHHHHTCSS--------
T ss_pred hhccCchHHHHHHHHHHHHHhCCCEEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEeCCHHHHHHHcCCCC--------
Confidence 2345567888999999999999999999988888876667778888999999999999999999998641
Q ss_pred cccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCC
Q 008161 432 NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPH 511 (575)
Q Consensus 432 ~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~ 511 (575)
..+.++.|.+.|++.||||+|.+|+++++++...++++++ .++ ++|||||||+|+|||+++|++|
T Consensus 228 ---------~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~--~~~--vvdttGAGDaf~a~~~~~l~~g-- 292 (328)
T 4e69_A 228 ---------PDATADRYARAGVRSVVVKNGPHAVHFLQDGRRGRVPVPP--VAQ--VVDTTAAGDSFNAGLLDSVLAG-- 292 (328)
T ss_dssp ---------HHHHHHHHHTTTCSEEEEBCTTSCEEEEETTEEEEECCCC--CCS--CCCCTTHHHHHHHHHHHHHHTT--
T ss_pred ---------HHHHHHHHHhcCCCEEEEEeCCCCeEEEeCCceEEecCCC--CCC--ccCCCChhHHHHHHHHHHHHCC--
Confidence 2366777888899999999999999999887555555421 133 8999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHccccccCC
Q 008161 512 LITDKGYLVRTIKYAIDCGVRDQWSQARTL 541 (575)
Q Consensus 512 ~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~ 541 (575)
+++++|+++|+++|+++|++.|+.+
T Consensus 293 -----~~l~~a~~~A~~~aa~~v~~~Ga~~ 317 (328)
T 4e69_A 293 -----QPLETAIAAAAALAGQVVQGKGALV 317 (328)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred -----CCHHHHHHHHHHHHHHHHccCCCcC
Confidence 9999999999999999999999963
No 20
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=100.00 E-value=5e-43 Score=367.79 Aligned_cols=316 Identities=13% Similarity=0.092 Sum_probs=242.3
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
..|++|+|||++++|+.+... . + +.....+...+||+++|+|++|++||.+|.|+|.||+|.+|+
T Consensus 22 ~mm~kv~~~GE~m~~l~p~~~----~-------~----~~~~~~~~~~~GG~~aNvA~~larLG~~~~~ig~vG~D~~G~ 86 (351)
T 4gm6_A 22 SMMKQVVTIGELLMRLSTQQG----I-------P----FSQTTALDIHIGGAEANVAVNLSKLGHPTRIATVVPANPIGK 86 (351)
T ss_dssp ---CEEEEECCCEEEEECCTT----C-------C----GGGCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHH
T ss_pred hccCCEEEEcceeEEecCCCC----C-------C----ccccCeEEEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHH
Confidence 345689999999999986531 1 1 123478899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEe-cCCccccCCccccc-hhhhccCcEEEEecccc-cccc
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCAEDALTKSEIN-IDVLKEAKMFYFSTHSM-LERN 358 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga~~~lt~e~i~-~~~l~~ad~v~~sg~~l-~~~~ 358 (575)
++++.|++.||+++++...++.+|+.+++..+..+.+.+.+. ...+...+...+++ .+.++++++||++|+.+ .++.
T Consensus 87 ~l~~~L~~~GVdt~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~g~~l~~~~~ 166 (351)
T 4gm6_A 87 MAVEHLWRHQVDTAFVVEAGDRLGTYYLESGTALKAPSVVYDRQHSSFARHKSMDWDLSELLKGIRVLHVSGITIALSTF 166 (351)
T ss_dssp HHHHHHHHTTEECTTEEECSSCCCEEEEECCBTTBCCEEEEECTTCHHHHCCCCCCCHHHHHTTEEEEEEEHHHHHHCHH
T ss_pred HHHHHHHHcCCCcccccccCCccceeEEEEccCCcceEEEEccccchhhhCCccccCHHHHHhhcccceecccchhhchh
Confidence 999999999999999988877666665555555566555432 23333445555554 35788999999999653 4556
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccccccc
Q 008161 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 359 ~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
..+.+.++++.|+++|++|+||||+++.+|. .+..++.+.++++++|+|++|++|+..|++......+
T Consensus 167 ~~~~~~~~~~~ak~~g~~v~~D~n~r~~lw~-~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~----------- 234 (351)
T 4gm6_A 167 WLEMVVKIIREAKRNGIKISFDMNYRAKLWE-LEAAKRAYQQLLPLVDYCSAGQMDAVAFFEISSETTD----------- 234 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCCTTTSC-HHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCTTCSC-----------
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCcCchhhh-hhhHHHHHHHHHHhCCccccCHHHHHHHhCCCCchhH-----------
Confidence 7788999999999999999999999999995 4566788889999999999999999999987643211
Q ss_pred CCcHHHHHHHHh-----cCCcEEEEecCCc--ceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCC
Q 008161 439 HYEPEVIAPLWH-----ENLKVLFVTNGTS--KVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPH 511 (575)
Q Consensus 439 ~~~~e~~~~L~~-----~g~k~VVVT~G~~--Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~ 511 (575)
..+....... .+.+.++|+.+.. |+.++..+...++++++ .++ |||||||||+|+|||+++|++|
T Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~--VvDttGAGDaF~ag~l~~l~~g-- 306 (351)
T 4gm6_A 235 --YYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQGECWESEEYA--IYP--IVDRVGGGDAYTAAVLHGILSE-- 306 (351)
T ss_dssp --HHHHHHHHCTTCCEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE--ECS--CSCCTTHHHHHHHHHHHHHHTT--
T ss_pred --HHHHHHhhhhhhhhhhccccceeeeccCCceEEEEeCCceEEeCCCC--CCC--cCCCCChhHHHHHHHHHHHHCC--
Confidence 0122222211 1334456666554 56677776555555532 123 7999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCCC
Q 008161 512 LITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDPY 558 (575)
Q Consensus 512 ~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~~ 558 (575)
+++++|+++|+++||++|++.|+.+++| .++|++|+.+...
T Consensus 307 -----~~~~~al~~A~aaaal~v~~~Ga~~~~~-~~ev~~~l~~~~~ 347 (351)
T 4gm6_A 307 -----WRPDETVKFATAAAGLKHSIHGDINPFD-EKTIADFAADKSR 347 (351)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSSSSSCCCC-HHHHHHHHHC---
T ss_pred -----CCHHHHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHhCCCC
Confidence 9999999999999999999999998776 5899999976543
No 21
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=2.8e-42 Score=362.11 Aligned_cols=297 Identities=15% Similarity=0.168 Sum_probs=249.0
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
.+|+|+|||++++|++..+ +++|.+ .....+..+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 28 ~~~~i~viG~~~iD~~~~~---~~~p~~-------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~ 97 (343)
T 2rbc_A 28 GGKHVLCVGAAVLDTLFRV---ADMPKG-------EGKVLPYEVLQIAEGMASSAAYAVHRMGGRASLWGAVGDDETGTR 97 (343)
T ss_dssp CCCEEEEESCCEEEEEEEC---SSCCCS-------SSCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHH
T ss_pred cCCeEEEECcceEEEEeec---CCCCCC-------CCeEeeeeeEEcCCcHHHHHHHHHHHcCCceEEEEEeCCCHHHHH
Confidence 3468999999999999875 344421 112234678899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHH
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+++.|++.||++.++.+.++.+|++++++++.+|+++++ ...++...++++++....+..+++||++++. .+.
T Consensus 98 i~~~L~~~GVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~-~~~~~~~~~~~~~l~~~~l~~~~~v~~~~~~------~~~ 170 (343)
T 2rbc_A 98 ILRDLSESGIDTSGMTVAPGARSALSTIIIDNRGERLIV-PFYDHRLHEKKRACTPEDIALFDAVLVDVRW------PEL 170 (343)
T ss_dssp HHHHHHHTTEECTTCEEETTCCCEEEEEEECTTSCEEEE-EECCGGGGSSCCCCCHHHHTTCSEEEECSSS------HHH
T ss_pred HHHHHHHcCCceeeEEEcCCCCCceEEEEECCCCCEEEE-EcCCCcccCChhHhcHhhhCCCCEEEEcCCC------HHH
Confidence 999999999999999887778999999999988998774 4556666677777766678899999998742 256
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHH-hcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ-AWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~-ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
+..+++.+++.|++|+|||... .+.+.+ +++++|+|++|.+|+..|+|... .
T Consensus 171 ~~~~~~~a~~~g~~v~~Dp~~~----------~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~-----------------~ 223 (343)
T 2rbc_A 171 ALDVLTVARALGKPAILDGDVA----------PVETLEGLAPAATHIVFSEPAATRLTGLET-----------------V 223 (343)
T ss_dssp HHHHHHHHHHTTCCEEEEECSC----------CHHHHHHHGGGCSEEEEEHHHHHHHHCCSS-----------------H
T ss_pred HHHHHHHHHHCCCEEEEECCcc----------ccccHHHHHhcCCEEEeCHHHHHHHcCCCC-----------------H
Confidence 7888999999999999998521 134566 88999999999999999998641 2
Q ss_pred HHHHHHHHhcCC-cEEEEecCCcceEEEecC--CCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchh
Q 008161 442 PEVIAPLWHENL-KVLFVTNGTSKVHYYTKE--DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 442 ~e~~~~L~~~g~-k~VVVT~G~~Ga~v~~~~--~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
.+.++.|.+.|+ +.||||+|.+|++++.++ ...++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 224 ~~~~~~l~~~g~~~~VvvT~G~~G~~~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~~~~l~~g-------~~ 291 (343)
T 2rbc_A 224 KDMLPVLHARYPQTFIAVTAGPAGCWWTEADDPTVHFQTT---MQVE--AVDTLAAGDIFHGTFALAMAEG-------MQ 291 (343)
T ss_dssp HHHHHHHHHHSTTSEEEEECGGGCEEEECTTCCCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CC
T ss_pred HHHHHHHHHhCCCceEEEEECCcceEEEeCCCceeEEecC---CCCc--cccCCChHHHHHHHHHHHHHcC-------CC
Confidence 356777888898 999999999999998776 4444544 3454 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++|+++|+++|+++|++.|+..++|++++|++++.+
T Consensus 292 ~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 328 (343)
T 2rbc_A 292 SRAAVRLSSVAAALKCTVFGGRIGAPTREETEEAMRQ 328 (343)
T ss_dssp HHHHHHHHHHHHHHHHTSSSGGGGCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCccCCCCHHHHHHHHHh
Confidence 9999999999999999999998889999999999854
No 22
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=100.00 E-value=2.3e-42 Score=366.31 Aligned_cols=322 Identities=12% Similarity=0.104 Sum_probs=252.5
Q ss_pred cccccCCC--CcEEEEccceeeeeccCCCC-----------CCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHH
Q 008161 197 ISFTYGWP--PLVCCFGSAQHAFVPSGRPA-----------NRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALAR 263 (575)
Q Consensus 197 i~~~~~~~--~~VlviG~~~iD~i~~~~~~-----------~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLar 263 (575)
++.+++.| .+|+|+|++++|++..+... ..+.+ +.+.+..........+...+||+++|+|++|++
T Consensus 15 ~~~~~~~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~-~~~~P~~ge~~~~~~~~~~~GG~~~N~A~~la~ 93 (370)
T 3vas_A 15 VPRGSHDLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAE-EKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQW 93 (370)
T ss_dssp ------CCCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECC-GGGTHHHHHHTTSSSCEEEEECHHHHHHHHHHH
T ss_pred ccCCccccCCccEEEECCcceeEEEecCHHHHHHcCCCCCceEEcc-HHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHH
Confidence 33445554 58999999999999887310 00000 112223333334567889999999999999999
Q ss_pred c---CCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch--
Q 008161 264 L---GGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI-- 338 (575)
Q Consensus 264 L---G~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~-- 338 (575)
| |.++.|+|.||+|.+|+++++.|++.||++.++...++.+|++++++++ +|+|+++ .+.+++..+++++++.
T Consensus 94 L~~~G~~~~~ig~vG~D~~G~~~~~~L~~~GV~~~~~~~~~~~~Tg~~~i~v~-~g~rt~~-~~~ga~~~l~~~~~~~~~ 171 (370)
T 3vas_A 94 IIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMV-TYLGAACDLSLAHIEQPH 171 (370)
T ss_dssp HHCCTTCEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SSCEEEE-EEEEGGGGCCHHHHTSHH
T ss_pred hcCCCCcEEEEEEEcCChhHHHHHHHHHHcCCcccccccCCCCCceEEEEEEe-CCceeEE-EccchhhhCCHHHcCchh
Confidence 9 9999999999999999999999999999999987656779999999998 8898875 5578888888888763
Q ss_pred --hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHH
Q 008161 339 --DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELE 416 (575)
Q Consensus 339 --~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~ 416 (575)
..+..+++||++|+.+. .+.+.+.++++.++++|+++++|+.. ++|. +...+.+.++++++|||++|+.|+.
T Consensus 172 ~~~~~~~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~ld~~~--~~~~--~~~~~~l~~ll~~~dil~~N~~Ea~ 245 (370)
T 3vas_A 172 VWSLVEKAQVYYIAGFVIN--TCYEGMLKIAKHSLENEKLFCFNLSA--PFLS--QFNTKEVDEMISYSNIVFGNESEAE 245 (370)
T ss_dssp HHHHHHHCSEEEEEGGGHH--HHHHHHHHHHHHHHHTTCEEEEECCC--HHHH--HHCHHHHHHHHTTCSEEEEEHHHHH
T ss_pred hHHHHhhCCEEEEEeeecc--CCHHHHHHHHHHHHHcCCEEEEECCc--HHHH--HHHHHHHHHHHhhCCEEEcCHHHHH
Confidence 57889999999997542 35678899999999999999999852 4442 3345678889999999999999999
Q ss_pred HhhCCCCCccccccccccccccCCcHHHHHHHHhc-------CCcEEEEecCCcceEEEe--cCCCeeEecccCCCCCCc
Q 008161 417 FLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHE-------NLKVLFVTNGTSKVHYYT--KEDDGAVLGTEDAPLTPF 487 (575)
Q Consensus 417 ~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~-------g~k~VVVT~G~~Ga~v~~--~~~~~~v~a~~~~~v~~~ 487 (575)
.|+|.......+ ..+.++.|.+. +++.||||+|++|+++++ ++...++++++.++.+
T Consensus 246 ~l~g~~~~~~~~------------~~~~~~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~v~~~~-- 311 (370)
T 3vas_A 246 AYGEVHGLLEDT------------VHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQ-- 311 (370)
T ss_dssp HHHHHTTCCSSH------------HHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEETTCSSCEEECCCCCCTTT--
T ss_pred HHhcccCCCccC------------HHHHHHHHHhhcccccccCCCEEEEecCCCceEEEEcCCCeEEEEecccccCCC--
Confidence 998864322111 23566777764 899999999999999998 6655566653221113
Q ss_pred ccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHH
Q 008161 488 TSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGME 550 (575)
Q Consensus 488 vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve 550 (575)
++|||||||+|+|||+++|++| +++++|+++|+++|+++|++.|+ .+|+.+++.
T Consensus 312 vvDttGAGDaF~ag~l~~l~~g-------~~l~~a~~~A~aaAa~~v~~~G~--~~p~~~~~~ 365 (370)
T 3vas_A 312 IIDTNGAGDAFAAGFIADYIRG-------KPMITSLHAAVKAAAYIICRSGF--SLGSRDSYS 365 (370)
T ss_dssp CSCCTTHHHHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHHHHTSSSS--CCCCGGGGC
T ss_pred cCCCCChHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHcccCC--cCCCCccce
Confidence 8999999999999999999999 99999999999999999999999 478887765
No 23
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=100.00 E-value=1.5e-42 Score=357.08 Aligned_cols=296 Identities=14% Similarity=0.115 Sum_probs=242.8
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
+|++|+|+|++++|++... +++|.. .+ ......+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 4 ~m~~i~viG~~~iD~~~~~---~~~p~~------~~-~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~ 73 (302)
T 2c4e_A 4 KMEKITCVGHTALDYIFNV---EKFPEP------NT-SIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFKNSG 73 (302)
T ss_dssp CEEEEEEESCCEEEEEEEC---SSCCCT------TC-CCCCSCEEEEEECHHHHHHHHHHHTTCEEEEECEECTTTTTSH
T ss_pred CcCcEEEECceeEEEEecc---cccCCC------Cc-eeeecceeecCCCHHHHHHHHHHHCCCceEEEEEEeCCCchHH
Confidence 4568999999999999875 345421 11 1234568899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHH
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+++.|++.||+++++.+.++.+|++++++++.+|++++. .+.++...+++++++. ..+++||+++. ..+.
T Consensus 74 i~~~l~~~gv~~~~~~~~~~~~T~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~---~~~~~v~~~~~------~~~~ 143 (302)
T 2c4e_A 74 YERYLKNLDINISKLYYSEEEETPKAWIFTDKDNNQITF-FLWGAAKHYKELNPPN---FNTEIVHIATG------DPEF 143 (302)
T ss_dssp HHHHHHHTTCBCTTCEECSSSCCCEEEEEECSSCCEECC-EECGGGGGGGGCCCCC---CCEEEEEECSS------CHHH
T ss_pred HHHHHHHcCCcccceEeeCCCCCceEEEEECCCCCEEEE-EeCChhhhCCHhhcCc---ccCCEEEEeCC------CcHH
Confidence 999999999999988877777899999999888998765 4466666677766643 67899999852 2277
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcH
Q 008161 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+.++++.++++| +|+|||+.+...|. .+.+.++++++|+|++|++|+..|+|.....
T Consensus 144 ~~~~~~~a~~~g-~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~----------------- 200 (302)
T 2c4e_A 144 NLKCAKKAYGNN-LVSFDPGQDLPQYS-----KEMLLEIIEHTNFLFMNKHEFERASNLLNFE----------------- 200 (302)
T ss_dssp HHHHHHHHBTTB-EEEECCGGGGGGCC-----HHHHHHHHHTCSEEEEEHHHHHHHHHHHTCC-----------------
T ss_pred HHHHHHHHHhcC-CEEEeCchhhhhhh-----HHHHHHHHhcCCEEEcCHHHHHHHhCCCCcc-----------------
Confidence 888999999999 99999985433442 3456778999999999999999998753211
Q ss_pred HHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008161 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
.. .|++. ++.||||+|++|++++.++...++++ ++++ .++|||||||+|+|||+++|++| +++++|
T Consensus 201 ~~--~l~~~-~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~-~~vdt~GAGDaf~a~~~~~l~~g-------~~~~~a 266 (302)
T 2c4e_A 201 ID--DYLER-VDALIVTKGSKGSVIYTKDKKIEIPC---IKAG-KVIDPTGAGDSYRAGFLSAYVKG-------YDLEKC 266 (302)
T ss_dssp HH--HHHTT-CSEEEEECGGGCEEEECSSCEEEECC---CCCS-CCSCCTTHHHHHHHHHHHHHHTT-------CCHHHH
T ss_pred HH--HHHhc-CCEEEEEECCCceEEEeCCcEEEeCC---ccCC-cCCcCCCchHHHHHHHHHHHHcC-------CCHHHH
Confidence 11 56667 89999999999999998765445544 3332 17999999999999999999999 999999
Q ss_pred HHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 523 IKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++|+++|+++|++.|+..++|++++|++++.+
T Consensus 267 ~~~a~~~aa~~~~~~G~~~~~p~~~ev~~~~~~ 299 (302)
T 2c4e_A 267 GLIGAATASFVVEAKGCQTNLPTWDKVVERLEK 299 (302)
T ss_dssp HHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccCCCHHHHHHHHHh
Confidence 999999999999999998889999999999854
No 24
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=100.00 E-value=6.7e-42 Score=354.26 Aligned_cols=285 Identities=17% Similarity=0.208 Sum_probs=240.1
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
+.|++|+|||++++|++... +++|.+ . .......+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 17 ~mm~~i~viG~~~iD~~~~v---~~~p~~------g-~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~ 86 (310)
T 3go6_A 17 PMAPRVCVVGSVNMDLTFVV---DALPRP------G-ETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAAA 86 (310)
T ss_dssp --CCEEEEECCCEEEEEEEC---SSCCCT------T-CCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECSSHHHH
T ss_pred cccCCEEEECCceEEEEEec---CCCCCC------C-CeEEecceeecCCCHHHHHHHHHHHCCCCeEEEEEECCCHHHH
Confidence 34678999999999999875 345421 1 1223467889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
.+++.|++.||++.++... +.+|++++++++.+|+++++ ...++...++ ++ ...+..+++||+++. .+.+
T Consensus 87 ~i~~~L~~~gV~~~~v~~~-~~~T~~~~~~~~~~g~~~~~-~~~ga~~~l~--~~-~~~l~~~~~v~~~~~-----~~~~ 156 (310)
T 3go6_A 87 QLRAHLRANAVGLDRTVTV-PGPSGTAIIVVDASAENTVL-VAPGANAHLT--PV-PSAVANCDVLLTQLE-----IPVA 156 (310)
T ss_dssp HHHHHHHHTTCBCTTCEEC-SSCCEEEEEEECTTSCEEEE-EECGGGGGCC--CC-TTTTTTCSEEEECSS-----SCHH
T ss_pred HHHHHHHHcCCccceeEec-CCCCCEEEEEEcCCCCEEEE-ecCChhhhHH--HH-HHHhhcCCEEEECCC-----CCHH
Confidence 9999999999999998654 46899999999988998875 4466766666 44 567889999999852 3467
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+..+++.++++|++|+||++....+ .+.+..+++++|+|++|++|++.|++.
T Consensus 157 ~~~~~~~~a~~~g~~v~~D~~~~~~~-------~~~~~~ll~~~dil~~N~~Ea~~l~g~-------------------- 209 (310)
T 3go6_A 157 TALAAARAAQSADAVVMVNASPAGQD-------RSSLQDLAAIADVVIANEHEANDWPSP-------------------- 209 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSCC-------HHHHHHHHHHCSEEEEEHHHHHHSSSC--------------------
T ss_pred HHHHHHHHHHHcCCEEEEcCCccccc-------hHHHHHHHhhCCEEEeCHHHHHHHhCC--------------------
Confidence 88899999999999999999854332 456778899999999999999998752
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHc----CCCCCCCch
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV----QPHLITDKG 517 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~----g~~~~~d~~ 517 (575)
++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++ | +
T Consensus 210 -----------~~~vvvt~G~~Ga~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~ag~~~~l~~~~~~g-------~ 266 (310)
T 3go6_A 210 -----------PTHFVITLGVRGARYVGADGVFEVPA---PTVT--PVDTAGAGDVFAGVLAANWPRNPGSP-------A 266 (310)
T ss_dssp -----------CSEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHCCSSSCCH-------H
T ss_pred -----------CCEEEEEECCCCEEEEECCceEEeCC---CCCC--cCcCCCchHHHHHHHHHHHHhcccCC-------C
Confidence 57999999999999998775445554 4454 799999999999999999999 8 9
Q ss_pred hHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCC
Q 008161 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPD 556 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~ 556 (575)
++++|+++|+++|+++|++.|+..++|+++||+++|...
T Consensus 267 ~l~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~ 305 (310)
T 3go6_A 267 ERLRALRRACAAGALATLVSGVGDCAPAAAAIDAALRAN 305 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSTTCCCCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhc
Confidence 999999999999999999999998999999999998553
No 25
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=100.00 E-value=1.3e-41 Score=354.88 Aligned_cols=303 Identities=18% Similarity=0.251 Sum_probs=246.5
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
+.||+|+|||++++|++... +++|.+ .+ ......+...+||+++|+|++|++||.++.|+|.||+|.+|+
T Consensus 22 ~~~~~vlviG~~~iD~~~~~---~~~p~~------g~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~ 91 (331)
T 2fv7_A 22 EEVAAVVVVGSCMTDLVSLT---SRLPKT------GE-TIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGN 91 (331)
T ss_dssp --CCSEEEECCCEEEEEEEC---SSCCCT------TC-CCCCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHH
T ss_pred cccCCEEEECcccEEEEEec---CCCCCC------Cc-eEecCceEECcCCHHHHHHHHHHHCCCCeEEEEEECCChhHH
Confidence 34578999999999999875 355521 11 223457889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch--hhhccCcEEEEecccccccch
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~--~~l~~ad~v~~sg~~l~~~~~ 359 (575)
++++.|++.||++.++.+.++.+|++++++++.+|++++. ...+++..++++++.. ..+..+++||+++. .+
T Consensus 92 ~l~~~L~~~Gv~~~~v~~~~~~~T~~~~v~~~~~g~~~~~-~~~ga~~~l~~~~~~~~~~~l~~~~~v~~~~~-----~~ 165 (331)
T 2fv7_A 92 DYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIV-IVAGANLLLNTEDLRAAANVISRAKVMVCQLE-----IT 165 (331)
T ss_dssp HHHHHHHTTTEECTTEEEESSSCCEEEEEEECTTSCEEEE-EECGGGGGCCHHHHHHTHHHHHHCSEEEECSS-----SC
T ss_pred HHHHHHHHcCCcceeeEecCCCCCceEEEEECCCCCeEEE-ecCCccccCCHHHHHHHHHhhccCCEEEEecC-----CC
Confidence 9999999999999999887778999999999888998875 4467777788777652 35788999999753 23
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccC
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.++++|++|+|||+.....| ...+++++|+|++|..|++.|+|....+..+
T Consensus 166 ~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~---------~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~----------- 225 (331)
T 2fv7_A 166 PATSLEALTMARRSGVKTLFNPAPAIADL---------DPQFYTLSDVFCCNESEAEILTGLTVGSAAD----------- 225 (331)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCSCCTTC---------CTHHHHTCSEEEEEHHHHHHHHSSCCCSHHH-----------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCcccccc---------hHHHHhcCCEEEeCHHHHHHHhCCCCCChhH-----------
Confidence 46788899999999999999998653333 2357789999999999999999875322111
Q ss_pred CcHHHHHHHHhcCCcEEEEecCCcceEEEecC--CCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCch
Q 008161 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKE--DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 440 ~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~--~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.|++.|++.||||+|.+|++++.++ ...++++ ++++ ++|||||||+|+|||+++|++|+. .
T Consensus 226 -~~~~~~~l~~~g~~~VvvT~G~~G~~~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g~~-----~ 294 (331)
T 2fv7_A 226 -AGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPT---EKVK--AVDTTGAGDSFVGALAFYLAYYPN-----L 294 (331)
T ss_dssp -HHHHHHHHHTTTCSEEEEECGGGCEEEEESSCCSCEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHHCTT-----S
T ss_pred -HHHHHHHHHHcCCCEEEEEECCCceEEEECCCCceeEecC---CCCc--cCCCCCchHHHHHHHHHHHHhCCC-----C
Confidence 1356777888899999999999999998876 4455554 3444 799999999999999999998721 4
Q ss_pred hHHHHHHHHHHHHHHHccccccCCCCCCHHHHHh
Q 008161 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEE 551 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~ 551 (575)
++++|+++|+++|+++|++.|+..++|++++|++
T Consensus 295 ~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~ 328 (331)
T 2fv7_A 295 SLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPL 328 (331)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSGGGGCCCGGGSCG
T ss_pred CHHHHHHHHHHHHHHHhCCCCCccCCCCHHHHhh
Confidence 7999999999999999999999888999998865
No 26
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=100.00 E-value=3.3e-42 Score=354.32 Aligned_cols=285 Identities=15% Similarity=0.125 Sum_probs=241.0
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
+|+|+|+|++++|++... +++|.+ .+ ......+...+||+++|+|++|++||.++.++|.||+|.+|+.+
T Consensus 2 ~~~i~viG~~~iD~~~~~---~~~p~~------g~-~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~i~~vG~D~~g~~i 71 (299)
T 3ikh_A 2 SLRVYVTGNITVDETWSI---PDIPKK------GA-SIHGVKVSQDIGGKGANQAIILSRCGIETRLIAATGNDSNGAWI 71 (299)
T ss_dssp CCCEEEECCCEEEEEEEC---SSCCCT------TC-EEECEEEEEEEECHHHHHHHHHHHTTCCEEEECCCCSSHHHHHH
T ss_pred CceEEEECceEEEEEEec---CCCCCC------CC-eEEeeeeeeccCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHH
Confidence 378999999999999875 455531 11 11235678999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||+++++. .++.+|++++++++.+|+++++ ..++++..+++++++ .+.+..++++|+++. .+.+
T Consensus 72 ~~~l~~~gv~~~~v~-~~~~~T~~~~~~~~~~g~~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~v~~~g~-----~~~~ 144 (299)
T 3ikh_A 72 RQQIKNEPLMLLPDG-HFNQHSDTSIILNSADGDNAII-TTTAAADTFSLDEMIPHMADAVAGDILLQQGN-----FSLD 144 (299)
T ss_dssp HHHGGGSSCEEESSS-CCSSCCEEEEEECSSSCSCEEE-EECHHHHHCCHHHHGGGGTTCCTTCEEEECSC-----SCHH
T ss_pred HHHHHHcCCceeeeE-ecCCCCcEEEEEEcCCCCeEEE-EeCCccccCCHHHHHHHHhhhccCCEEEECCC-----CCHH
Confidence 999999999999984 5667899999999989998875 457777788887775 346789999999863 2457
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+..+++.++++|++|+||++.... .+..+++++|+|++|++|++.|+|
T Consensus 145 ~~~~~~~~a~~~g~~v~~D~~~~~~----------~~~~ll~~~dil~~N~~E~~~l~g--------------------- 193 (299)
T 3ikh_A 145 KTRALFQYARSRGMTTVFNPSPVNP----------DFCHLWPLIDIAVVNESEAELLQP--------------------- 193 (299)
T ss_dssp HHHHHHHHHHHTTCEEEECCCSCCG----------GGGGCGGGCSEEEEEHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHcCCEEEEccccchh----------hHHHHHhhCCEEEecHHHHHHHhc---------------------
Confidence 7889999999999999999975432 355788999999999999999875
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHH-HHHHHHHcCCCCCCCchhHH
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVA-GIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~A-Gfl~~L~~g~~~~~d~~sl~ 520 (575)
.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+| ||+++|++| ++++
T Consensus 194 ---------~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaf~a~~~~~~l~~g-------~~~~ 252 (299)
T 3ikh_A 194 ---------YGVKTLVITQGAAGAWLVQEGQRQFCPA---VPAE--ALDTTGAGDTFLAVMLASALLRG-------VAPD 252 (299)
T ss_dssp ---------CSCSEEEEECGGGCEEEECSSCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHHTT-------SSSC
T ss_pred ---------CCCCEEEEEECCCceEEEeCCceEEeCC---CCCc--cCCCCCchHHHHHHHHHHHHHcC-------CCHH
Confidence 3678999999999999998775555554 3454 8999999999999 999999999 9999
Q ss_pred H-HHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCC
Q 008161 521 R-TIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDP 557 (575)
Q Consensus 521 e-Al~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~ 557 (575)
+ |+++|+++|+++|++.|+..++|++++|+++|++..
T Consensus 253 ~~a~~~a~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~ 290 (299)
T 3ikh_A 253 ALALAHASRAAAITVSRRGTLSAFPGSRELAALLTTDG 290 (299)
T ss_dssp HHHHHHHHHHHHHHHHSSSSTTTSCCHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCHHHHHHHHHhcc
Confidence 9 999999999999999999989999999999997644
No 27
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=100.00 E-value=4.6e-42 Score=364.21 Aligned_cols=318 Identities=13% Similarity=0.145 Sum_probs=247.5
Q ss_pred cEEEEccceeeeeccCCC-----------CCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCC---eEEE
Q 008161 206 LVCCFGSAQHAFVPSGRP-----------ANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGK---VAFM 271 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~-----------~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~---v~lv 271 (575)
.|++||++++|++..+.. .-.+.+ +.+.++.+.+.......+.+||+++|+|++|++||.+ +.|+
T Consensus 28 ~v~giGnalvDi~~~v~d~~l~~~~l~kg~m~l~~-~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~LG~~~~~~~fi 106 (372)
T 3uq6_A 28 YVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAE-EKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYV 106 (372)
T ss_dssp CEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECC-GGGTTHHHHHHTSSSCEEEECCHHHHHHHHHHHHHCSTTSEEEE
T ss_pred eEEEECCceeeEEEEeCHHHHHHcCCCCCceEEcC-HHHHHHHHHHhccCCeEEeCCcHHHHHHHHHHHcCCCCCcEEEE
Confidence 499999999999987631 001121 3344455555455677889999999999999999865 8999
Q ss_pred EEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc----hhhhccCcEE
Q 008161 272 GKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN----IDVLKEAKMF 347 (575)
Q Consensus 272 g~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~----~~~l~~ad~v 347 (575)
|.||+|.+|+++++.|++.||++.++...++.+|+.++++++ +|+|++. .+.++...+++++++ +..+..++++
T Consensus 107 G~VG~D~~G~~l~~~L~~~GV~~~~~~~~~~~~T~~~~v~~~-dgert~~-~~~ga~~~l~~~~i~~~~~~~~i~~a~~~ 184 (372)
T 3uq6_A 107 GCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMV-TYLGAACDLSLAHIEQPHVWSLVEKAQVY 184 (372)
T ss_dssp EEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SSCEEEE-EEEEGGGGCCHHHHTSHHHHHHHHHCSEE
T ss_pred eeecCCHHHHHHHHHHHHcCCCceeeeecCCCCceEEEEEcC-CCceEEE-EeccchhhcchhhhhhhhHHHHhhcccEE
Confidence 999999999999999999999999988888888999988885 7898875 567888888888875 3567899999
Q ss_pred EEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccc
Q 008161 348 YFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEF 427 (575)
Q Consensus 348 ~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~ 427 (575)
|++|+.+ ....+.+.++++.++++|++++||++.+.. ....++.+.++++++|||++|++|+..|++.......
T Consensus 185 ~~~g~~~--~~~~~~~~~~~~~a~~~g~~v~ldls~~~~----~~~~~~~l~~ll~~~Dil~~Ne~Ea~~l~~~~~~~~~ 258 (372)
T 3uq6_A 185 YIAGFVI--NTCYEGMLKIAKHSLENEKLFCFNLSAPFL----SQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLED 258 (372)
T ss_dssp EEEGGGH--HHHHHHHHHHHHHHHHTTCEEEEECCCHHH----HHHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCSS
T ss_pred EEecccc--cccHHHHHHHHHHHHHcCCeEeeccccchh----hhhhHHHHHHHhhcCCcccCCHHHHHHHhCCCCCchh
Confidence 9999754 235778899999999999999999874322 1234567888999999999999999999876533221
Q ss_pred cccccccccccCCcHHHHHHHHh-------cCCcEEEEecCCcceEEEecCCCeeEecccCCCCCC-cccCccCchHHHH
Q 008161 428 DTKNNARSKFVHYEPEVIAPLWH-------ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTP-FTSDMSASGDGIV 499 (575)
Q Consensus 428 d~~~~~~~~~~~~~~e~~~~L~~-------~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~-~vVDTtGAGDaF~ 499 (575)
+ ..+.++.+.. .+.+.||||+|++|++++.++.. .+..++.++++. .+||||||||+|+
T Consensus 259 ~------------~~~~a~~l~~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~-~~~~~~v~~~~~~~vVDTtGAGDaF~ 325 (372)
T 3uq6_A 259 T------------VHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDS-EIHQFMVEQFKDDQIIDTNGAGDAFA 325 (372)
T ss_dssp H------------HHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEESSCS-SCEEECCCCCCGGGCCCCTTHHHHHH
T ss_pred H------------HHHHHHHHhhhhhhhhcCCceEEEEcCCCCceEEecCCCc-eeeeeeccCCCCCceeCCCchHHHHH
Confidence 1 1233444433 36789999999999999987643 222233333332 3899999999999
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 500 AGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 500 AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
|||+++|++| +++++|+++|+++|+++|++.|+ .+|++++++-.|+
T Consensus 326 agfl~~l~~g-------~~l~~a~~~a~~aAa~vv~~~Ga--~lp~r~~~~lkln 371 (372)
T 3uq6_A 326 AGFIADYIRG-------KPMITSLHAAVKAAAYIICRSGF--SLGSRDSYSLKIN 371 (372)
T ss_dssp HHHHHHHTTT-------CCHHHHHHHHHHHHHHHHTSSSS--CCCCGGGCC----
T ss_pred HHHHHHHHcC-------CCHHHHHHHHHHHHHHHHcCCCC--CCCChhHHHHHhc
Confidence 9999999999 99999999999999999999998 4789888765543
No 28
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=8.8e-42 Score=353.82 Aligned_cols=301 Identities=14% Similarity=0.086 Sum_probs=241.7
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
.|++|+|+|++++|++.... +.|. ..+. ....+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 2 ~m~~i~viG~~~~D~~~~~~---~~~~------~~~~--~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~ 70 (317)
T 2nwh_A 2 HMKKILVLGGAHIDRRGMIE---TETA------PGAS--NPGSWMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEV 70 (317)
T ss_dssp -CCEEEEESCCEEEEEEEES---SSCC------TTSC--CCEEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHH
T ss_pred CCCeEEEECchheEEeeccC---CCCC------CCCC--ceEeEEEeCCcHHHHHHHHHHhcCCCcEEEEeecCCchHHH
Confidence 46789999999999997652 2221 1111 12347889999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--h--hhhccCcEEEEecccccccc
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--I--DVLKEAKMFYFSTHSMLERN 358 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~--~~l~~ad~v~~sg~~l~~~~ 358 (575)
+++.|++.||++++ ...++.+|++++++++.+|++++.+...++...++++.+. . ..+..++++|+++. .
T Consensus 71 l~~~L~~~gV~~~~-~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~ 144 (317)
T 2nwh_A 71 VAEAARQAGVEDTP-FTFLDRRTPSYTAILERDGNLVIALADMDLYKLFTPRRLKVRAVREAIIASDFLLCDAN-----L 144 (317)
T ss_dssp HHHHHHHTTCEECC-EEETTSCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHTSHHHHHHHHHCSEEEEETT-----S
T ss_pred HHHHHHHcCCCCCC-cccCCCCCceEEEEEcCCCCEEEEEcchHHHhhCCHHHhhhhhhhhHhccCCEEEEeCC-----C
Confidence 99999999999999 5556678999999999889988765555666667776654 2 46788999999852 2
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccccccc
Q 008161 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 359 ~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
+.+.+..+++.++++|++|+|||+. .| ..+.+..+++++|+|++|..|++.|+|....+
T Consensus 145 ~~~~~~~~~~~a~~~g~~v~~Dp~~---~~-----~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~------------- 203 (317)
T 2nwh_A 145 PEDTLTALGLIARACEKPLAAIAIS---PA-----KAVKLKAALGDIDILFMNEAEARALTGETAEN------------- 203 (317)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCS---HH-----HHGGGTTTGGGCSEEEEEHHHHHHHHC------------------
T ss_pred CHHHHHHHHHHHHhcCCeEEEeCCC---HH-----HHHHHHHHhhhCeEecCCHHHHHHHhCCChhH-------------
Confidence 4577888999999999999999863 12 12335678899999999999999999862111
Q ss_pred CCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCC-eeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCch
Q 008161 439 HYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 439 ~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.|++.|++.||||+|.+|++++++++. .++++ ++++ ++|||||||+|+|||+++|++| +
T Consensus 204 --~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~v~--~vdt~GAGDaf~a~~~~~l~~g-------~ 269 (317)
T 2nwh_A 204 --VRDWPNILRKAGLSGGVVTRGASEVVAFNGTEKAILHPP---LIRE--VKDVTGAGDAMASGYLAAIAEG-------K 269 (317)
T ss_dssp --CTTHHHHHHHTTCCCEEEEETTTEEEEECSSCEEEECCC---CSSS--CSCCCCSSHHHHHHHHHHHHTT-------C
T ss_pred --HHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCceEEeCC---CCcc--ccCCCChhHHHHHHHHHHHHcC-------C
Confidence 124567777889999999999999999876542 33333 3444 8999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
++++|+++|+++|+++|++.|+..++|++++|++++..
T Consensus 270 ~~~~a~~~A~~~aa~~v~~~G~~~~~~~~~~v~~~~~~ 307 (317)
T 2nwh_A 270 TIREALRQGAAAAAITVQSSFATSQDLSKDSVEAMLGL 307 (317)
T ss_dssp CHHHHHHHHHHHHHHHHSSTTCCGGGCCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHhHhhh
Confidence 99999999999999999999999888999999995443
No 29
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=100.00 E-value=2.6e-41 Score=353.15 Aligned_cols=306 Identities=15% Similarity=0.102 Sum_probs=246.4
Q ss_pred ccccCCCCcEEEEccceeeeeccCCCC-------CCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEE
Q 008161 198 SFTYGWPPLVCCFGSAQHAFVPSGRPA-------NRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAF 270 (575)
Q Consensus 198 ~~~~~~~~~VlviG~~~iD~i~~~~~~-------~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~l 270 (575)
+++|+.+|+|+|+|++++|+++.+... +++|. ..+.+ ....+...+||+++|+|++|++||.++.+
T Consensus 4 ~~~~~~~m~i~v~G~~~~D~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~GG~~~NvA~~la~LG~~~~~ 76 (334)
T 2pkf_A 4 DLYFQSHMTIAVTGSIATDHLMRFPGRFSEQLLPEHLHK------VSLSF-LVDDLVMHRGGVAGNMAFAIGVLGGEVAL 76 (334)
T ss_dssp CSSSCCSSEEEEESCCEEEEEEECSSCTHHHHTTSCGGG------CCCCC-CCSEEEEEEECHHHHHHHHHHHTTCEEEE
T ss_pred cccCccCCeEEEECChhheEEEecChHHhhhhchhhccc------ccccc-ccccceecCCChHHHHHHHHHHcCCCeEE
Confidence 467888889999999999999764110 12221 11111 23567889999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchh--hhccCcEEE
Q 008161 271 MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINID--VLKEAKMFY 348 (575)
Q Consensus 271 vg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~--~l~~ad~v~ 348 (575)
+|.||+| +|. +++.|++.||+++++.+.++.+|++++++++.+|++.+.+. .++...++++++... .+..++++|
T Consensus 77 i~~vG~D-~g~-i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~-~ga~~~~~~~~~~~~~~~l~~~~~v~ 153 (334)
T 2pkf_A 77 VGAAGAD-FAD-YRDWLKARGVNCDHVLISETAHTARFTCTTDVDMAQIASFY-PGAMSEARNIKLADVVSAIGKPELVI 153 (334)
T ss_dssp ECEECGG-GHH-HHHHHHTTTEECTTCEECSSCCCEEEEEEECTTCCEEEEEE-CGGGGGGGGCCHHHHHHHHCSCSEEE
T ss_pred EEEEeCc-hHH-HHHHHHHCCCceeeeEecCCCCceEEEEEEcCCCCEEEEEC-CchhhhCCHhhcChhhhhhcCCCEEE
Confidence 9999999 999 99999999999999988777899999999988888776544 566666666666432 357899999
Q ss_pred EecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccc
Q 008161 349 FSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFD 428 (575)
Q Consensus 349 ~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d 428 (575)
+++. ..+.+.++++.++++|++|+|||+.+..+|. .+.+.++++++|+|++|++|+..|+|.....
T Consensus 154 ~~~~------~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~l~~~l~~~dil~~N~~E~~~l~g~~~~~--- 219 (334)
T 2pkf_A 154 IGAN------DPEAMFLHTEECRKLGLAFAADPSQQLARLS-----GEEIRRLVNGAAYLFTNDYEWDLLLSKTGWS--- 219 (334)
T ss_dssp EESC------CHHHHHHHHHHHHHHTCCEEEECGGGGGTSC-----HHHHHTTTTTCSEEEEEHHHHHHHHHHHCCC---
T ss_pred EcCC------ChHHHHHHHHHHHhcCCeEEEeccchhhhhh-----HHHHHHHHhcCCEEecCHHHHHHHhccCCCC---
Confidence 9864 2467788899999999999999987766664 3456789999999999999999998753211
Q ss_pred ccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCC-CeeEecccCCCCCCcccCccCchHHHHHHHHHHHH
Q 008161 429 TKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKED-DGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 429 ~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~-~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~ 507 (575)
.+ .+++ +++.||||+|++|++++.+++ ..++++ +++. .++|||||||+|+|||+++|+
T Consensus 220 -------------~~---~l~~-~~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~v~-~vvDttGAGDaF~a~~~~~l~ 278 (334)
T 2pkf_A 220 -------------EA---DVMA-QIDLRVTTLGPKGVDLVEPDGTTIHVGV---VPET-SQTDPTGVGDAFRAGFLTGRS 278 (334)
T ss_dssp -------------HH---HHHT-TCSCEEEECGGGCEEEECTTSCEEEECC---CCCS-CCCCCTTHHHHHHHHHHHHHH
T ss_pred -------------HH---HHHh-cCCEEEEEeCCCCeEEEeCCCcEEEeCC---cCCC-CCCCCCCchHHHHHHHHHHHH
Confidence 11 2333 388999999999999998765 445544 3443 168999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 508 VQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 508 ~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+| +++++|+++|+++|+++|++.|+..++|+++++++++.+
T Consensus 279 ~g-------~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 319 (334)
T 2pkf_A 279 AG-------LGLERSAQLGSLVAVLVLESTGTQEWQWDYEAAASRLAG 319 (334)
T ss_dssp TT-------CCHHHHHHHHHHHHHHHHTSSSSSCCCCCHHHHHHHHHH
T ss_pred cC-------CCHHHHHHHHHHHHHHHHhCCCCCcCCCCHHHHHHHHHH
Confidence 99 999999999999999999999999889999999999854
No 30
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=100.00 E-value=1.4e-41 Score=356.52 Aligned_cols=310 Identities=16% Similarity=0.198 Sum_probs=244.0
Q ss_pred CCCcEEEEccceeeeeccCCC-----------CCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHc----CCC
Q 008161 203 WPPLVCCFGSAQHAFVPSGRP-----------ANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARL----GGK 267 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~-----------~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarL----G~~ 267 (575)
+.++|+++|++++|++..+.. ...+++ +.|.+..+.+.....+...+||++.|+|++|++| |.+
T Consensus 6 ~~~~v~~iG~~~lD~~~~v~~~~l~~~~l~~g~~~l~~-~~~~p~~~~~~~~~~~~~~~GG~~~N~a~~la~L~~~~G~~ 84 (347)
T 3otx_A 6 APLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLS-ERQKGIFDDIEKMPNVRYVPGGSGLNVARVAQWMQQAYKGK 84 (347)
T ss_dssp CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECC-GGGTTHHHHHHTSTTCEEEECCHHHHHHHHHHHTTGGGTTS
T ss_pred CCCcEEEECCceeeEEEecCHHHHHHcCCCCCceEEcC-HHHHHHHHHHhccCCeEEecCCHHHHHHHHHHHhcccCCCC
Confidence 346799999999999987631 001111 3334444445455788999999999999999999 999
Q ss_pred -eEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch----hhhc
Q 008161 268 -VAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI----DVLK 342 (575)
Q Consensus 268 -v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~----~~l~ 342 (575)
+.|+|.||+|.+|+.+++.|++.||++.++. ..+.+|++++++++ +|+|+++ .+.++...++++++.. ..+.
T Consensus 85 ~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~-~~~~~T~~~~i~~~-~g~r~~~-~~~ga~~~~~~~~~~~~~~~~~~~ 161 (347)
T 3otx_A 85 FVTYVGCIADDRYGKVLKEAAEHEGIVMAVEH-TTKAGSGACAVCIT-GKERTLV-ADLGAANHLSSEHMRSPAVVRAMD 161 (347)
T ss_dssp SEEEECEECSSHHHHHHHHHHHHHTCEECCEE-CSSSCEEEEEEEEE-TTEEEEE-EEEEGGGGCCHHHHTSHHHHHHHH
T ss_pred eEEEEEEecCChHHHHHHHHHHHCCCceeccc-CCCCCCeEEEEEEE-CCceeee-echhhhhcCCHHHcCchhhHHHHh
Confidence 9999999999999999999999999999985 56678999999998 8888764 5678887888887763 5788
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCC
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIK 422 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~ 422 (575)
.++++|++|+.+. ...+.+.++++.++++|+++++|++. +.|. +.+.+.+.++++++|+|++|+.|++.|++..
T Consensus 162 ~~~~~~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~--~~~~--~~~~~~l~~~l~~~dil~~N~~Ea~~l~~~~ 235 (347)
T 3otx_A 162 ESRIFYFSGFTLT--VDVNHVLQACRKAREVDGLFMINLSA--PFIM--QFFSAQLGEVLPYTDIIVANRHEAKEFANMM 235 (347)
T ss_dssp HCSEEEEEGGGGG--TCHHHHHHHHHHHHHTTCEEEEECCC--HHHH--HHCHHHHHHHGGGCSEEEEEHHHHHHHHHHH
T ss_pred hCCEEEEeeeecc--cCHHHHHHHHHHHHHhCCEEEeeCch--hhhH--HHHHHHHHHHHhhCCEEecCHHHHHHHhccc
Confidence 9999999997542 34678899999999999999999852 3332 3345678889999999999999999998753
Q ss_pred CCccccccccccccccCCcHHHHHHHH------hcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCC-cccCccCch
Q 008161 423 PTEEFDTKNNARSKFVHYEPEVIAPLW------HENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTP-FTSDMSASG 495 (575)
Q Consensus 423 ~~~~~d~~~~~~~~~~~~~~e~~~~L~------~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~-~vVDTtGAG 495 (575)
.....+ ..+.++.|. ..+++.||||+|++|++++++++..++++ ++++. .+|||||||
T Consensus 236 ~~~~~~------------~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~---~~~~~~~vvDttGAG 300 (347)
T 3otx_A 236 KWDTDC------------VEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPV---PQLDQDKVIDMNGAG 300 (347)
T ss_dssp TCCCCC------------HHHHHHHHHHTSCCCCSSCCEEEEEETTEEEEEEETTEEEEECC---CCCCGGGCCSSCCSH
T ss_pred CCCcCC------------HHHHHHHHHhhhccccCCCCEEEEEeCCCCeEEEECCeEEEEEe---cccCCCCCCCCCChH
Confidence 211111 135566666 36899999999999999998765445554 33311 389999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCH
Q 008161 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPK 546 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~ 546 (575)
|+|+|||+++|++| +++++|+++|+++|+++|++.|+ .+|++
T Consensus 301 DaF~ag~l~~l~~g-------~~l~~a~~~a~~~aa~~v~~~G~--~~p~~ 342 (347)
T 3otx_A 301 DAFMGGFLSAYAVG-------KDLRRCCETGHYTAQEVIQRDGC--SFPEK 342 (347)
T ss_dssp HHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHHHHTCC------CCS
T ss_pred HHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHcccCC--CCCCC
Confidence 99999999999999 99999999999999999999997 45654
No 31
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=3.6e-41 Score=348.67 Aligned_cols=294 Identities=18% Similarity=0.249 Sum_probs=240.2
Q ss_pred CcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCC-eEEEEEeCCChHHHHH
Q 008161 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGK-VAFMGKLGDDEYGQAM 283 (575)
Q Consensus 205 ~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~-v~lvg~VG~D~~G~~i 283 (575)
++|+|+|++++|++... +++|.. .+ ......+...+||+++|+|++|++||.+ +.++|.||+|.+|+.+
T Consensus 15 ~~v~vvG~~~iD~~~~~---~~~p~~------g~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~i~~vG~D~~G~~l 84 (311)
T 1vm7_A 15 LVISVVGSSNIDIVLKV---DHFTKP------GE-TQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDLL 84 (311)
T ss_dssp CCEEEECCCEEEEEEEC---SSCCCT------TC-EEECSEEEEEEECHHHHHHHHHHHHHSSCEEEEEEECSSHHHHHH
T ss_pred CCEEEECcceeeEEEec---ccCCCC------Cc-eEecCeeeecCCCHHHHHHHHHHHcCCCceEEEEEECCChHHHHH
Confidence 57999999999999875 455531 12 2234678899999999999999999999 9999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
++.|++.|| ++.+.++.+|++++++++.+|++++. ...+++..+++++++...+..++++|+++.. +.+.+
T Consensus 85 ~~~L~~~gV---~v~~~~~~~T~~~~~~~~~~g~~~~~-~~~ga~~~l~~~~~~~~~~~~~~~v~~~~~~-----~~~~~ 155 (311)
T 1vm7_A 85 IENYEKLGI---TGYIRVSLPTGRAFIEVDKTGQNRII-IFPGANAELKKELIDWNTLSESDILLLQNEI-----PFETT 155 (311)
T ss_dssp HHHHHHTTE---EEEEECSSCCCEEEEEECTTSCEEEE-EECGGGGGCCGGGCCHHHHTTCSEEEECSSS-----CHHHH
T ss_pred HHHHHHCCC---EEEEcCCCCCeEEEEEECCCCCEEEE-EecCccccCCHHHhChhhcccCCEEEEeCCC-----CHHHH
Confidence 999999999 67666677999999999888998876 4457777888888876678899999998532 23343
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcHH
Q 008161 364 LQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPE 443 (575)
Q Consensus 364 ~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e 443 (575)
..+ +++.|++|+|||+.... .+..+++++|+|++|.+|+..|+|.......+ ..+
T Consensus 156 ~~~---a~~~~~~v~~Dp~~~~~----------~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~------------~~~ 210 (311)
T 1vm7_A 156 LEC---AKRFNGIVIFDPAPAQG----------INEEIFQYLDYLTPNEKEIEALSKDFFGEFLT------------VEK 210 (311)
T ss_dssp HHH---HHHCCSEEEECCCSCTT----------CCGGGGGGCSEECCBHHHHHHHHHHHHSCCCC------------HHH
T ss_pred HHH---HHHcCCEEEEeCcchhh----------hhHHHHhhCCEEeCCHHHHHHHhCCCCCChhH------------HHH
Confidence 333 77889999999985322 13468899999999999999998753211101 236
Q ss_pred HHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 008161 444 VIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTI 523 (575)
Q Consensus 444 ~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl 523 (575)
.++.|++.|++.||||+|.+|++++.++...++++ ++++ ++|||||||+|+|||+++|++| +++++|+
T Consensus 211 ~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--~vdttGAGDaf~a~~~~~l~~g-------~~~~~a~ 278 (311)
T 1vm7_A 211 AAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFPT---FKVK--AVDTTAAGDVFNGAFAVALSEG-------KNPEEAV 278 (311)
T ss_dssp HHHHHHHTTCSEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHHHHH
T ss_pred HHHHHHHcCCCEEEEEECCCCeEEEeCCceEEecC---CCcc--cCCCCccHHHHHHHHHHHHHCC-------CCHHHHH
Confidence 67788888999999999999999988764444443 3444 7999999999999999999999 9999999
Q ss_pred HHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 524 KYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 524 ~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
++|+++|++++++.|+..++|++++|+++++
T Consensus 279 ~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~ 309 (311)
T 1vm7_A 279 IFGTAAAAISVTRLGAQSSIPAREEVEAFLK 309 (311)
T ss_dssp HHHHHHHHHHTTSSSSGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCccccCCCHHHHHHHHh
Confidence 9999999999999999888999999999874
No 32
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=100.00 E-value=9.7e-42 Score=360.69 Aligned_cols=311 Identities=17% Similarity=0.183 Sum_probs=239.8
Q ss_pred CCcEEEEccceeeeeccCCC----------CCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHc---CCCeEE
Q 008161 204 PPLVCCFGSAQHAFVPSGRP----------ANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARL---GGKVAF 270 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~----------~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarL---G~~v~l 270 (575)
+.+|+++|++++|++..+.. .+....++.+.+..+.+.....+...+||++.|+|++|++| |.++.+
T Consensus 23 ~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~e~~~~~~~~~~~GG~~~N~a~~~~~L~~lG~~~~~ 102 (365)
T 3loo_A 23 DGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIF 102 (365)
T ss_dssp TTSEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGTHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHTCTTSEEE
T ss_pred CccEEEECCCeEeEEEecCHHHHHHcCCCCCCceechhHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhhcCCCcEEE
Confidence 34799999999999987631 00000112222222222222467789999999999999987 999999
Q ss_pred EEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch----hhhccCcE
Q 008161 271 MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI----DVLKEAKM 346 (575)
Q Consensus 271 vg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~----~~l~~ad~ 346 (575)
+|.||+|.+|+++++.|++.||++.++.+ .+.+|++++++++ +|+|+++ .++++...+++++++. ..+..+++
T Consensus 103 ig~vG~D~~g~~~~~~l~~~GV~~~~~~~-~~~~Tg~~~i~~~-~~~r~~~-~~~ga~~~~~~~~~~~~~~~~~~~~~~~ 179 (365)
T 3loo_A 103 FGCVGQDEYARILEERATSNGVNVQYQRS-ATSPTGTCAVLVT-GTQRSLC-ANLAAANDFTPEHLRSDGNRAYLQGAQF 179 (365)
T ss_dssp EEEEESBHHHHHHHHHHHHHTCEEEEEEE-SSSCCEEEEEEEE-TTEEEEE-EECGGGGGCCGGGGGSHHHHHHHHHCSE
T ss_pred EEEecCCchHHHHHHHHHHCCCceecccc-CCCCCeEEEEEEE-CCceEEE-eccchHhhCCHhHcCchhhHHHHhhCCE
Confidence 99999999999999999999999999887 6679999999998 6777664 5678888899888763 56889999
Q ss_pred EEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcc
Q 008161 347 FYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEE 426 (575)
Q Consensus 347 v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~ 426 (575)
||++|+.+. ...+.+.++++.++++|+++++|+.. ++|. +...+.+.++++++|||++|+.|++.|++......
T Consensus 180 v~i~G~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~--~~~~--~~~~~~l~~~l~~~dil~~N~~Ea~~l~g~~~~~~ 253 (365)
T 3loo_A 180 FYVSGFFFT--VSFESALSVAKEAAATGRMFMMNLSA--PFVP--QFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGT 253 (365)
T ss_dssp EEEEGGGHH--HHHHHHHHHHHHHHHTTCEEEEECCS--THHH--HHCHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCC
T ss_pred EEEeeeecc--CCHHHHHHHHHHHHHcCCEEEEECCc--hhhh--HHHHHHHHHHHHhCCEEecCHHHHHHHhcccCCCC
Confidence 999997542 35678899999999999999999853 3442 33466788899999999999999999987542211
Q ss_pred ccccccccccccCCcHHHHHHHHhc------CCcEEEEecCCcceEEE--ecCCCeeEecccCCCCCC-cccCccCchHH
Q 008161 427 FDTKNNARSKFVHYEPEVIAPLWHE------NLKVLFVTNGTSKVHYY--TKEDDGAVLGTEDAPLTP-FTSDMSASGDG 497 (575)
Q Consensus 427 ~d~~~~~~~~~~~~~~e~~~~L~~~------g~k~VVVT~G~~Ga~v~--~~~~~~~v~a~~~~~v~~-~vVDTtGAGDa 497 (575)
.+ ..+.++.|... +++.||||+|++|++++ .++...+++++ +++. .+||||||||+
T Consensus 254 ~~------------~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~---~v~~~~vvDttGAGDa 318 (365)
T 3loo_A 254 ED------------LREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQ---KLAPEQMVDTNGAGDA 318 (365)
T ss_dssp CC------------HHHHHHHHHTSCCSSTTSCCEEEEEETTEEEEEEETTCSCCEEECCC---CCC------CTTHHHH
T ss_pred CC------------HHHHHHHHHhhhhhccCCCCEEEEEeCCCCEEEEEecCCeEEEEecc---ccCCCCccCCCChHHH
Confidence 11 23556667653 88999999999999999 66555556553 3311 38999999999
Q ss_pred HHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHH
Q 008161 498 IVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKG 547 (575)
Q Consensus 498 F~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~e 547 (575)
|+|||+++|++| +++++|+++|+++|+++|++.|++ +|+..
T Consensus 319 F~agfl~~l~~g-------~~l~~a~~~a~~~Aa~~v~~~G~~--~p~~~ 359 (365)
T 3loo_A 319 FVGGFLAQLLQS-------RTVDVCIKCGIWAAREIIQRSGCT--FEGEP 359 (365)
T ss_dssp HHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHHGGGG--GGSCC
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHcCCCCC--CCCCc
Confidence 999999999999 999999999999999999999995 45543
No 33
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=2.9e-41 Score=345.73 Aligned_cols=285 Identities=15% Similarity=0.202 Sum_probs=226.8
Q ss_pred CCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
+|+|+|+|++++|+++. ...+||+++|+|++|++||.++.++|.||+|.+|+.+
T Consensus 3 ~~~v~viG~~~~D~~p~--------------------------~~~~GG~~~N~A~~la~LG~~~~~~~~vG~D~~g~~~ 56 (296)
T 2qhp_A 3 NNIIVGMGEALWDVLPE--------------------------GKKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEI 56 (296)
T ss_dssp CCEEEEESCCEEEEETT--------------------------EEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHH
T ss_pred cceEEEEchhheEecCC--------------------------CCCCCCHHHHHHHHHHHcCCCeeEEEEeCCChHHHHH
Confidence 35899999999999821 1578999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
++.|++.|| +++.+.++.+|+++++.++.+|++++.+........+++.+.....++++++||++++....+...+.+
T Consensus 57 ~~~l~~~gv--~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~ 134 (296)
T 2qhp_A 57 MEVFKEKQL--KNQIERVDYPTGTVQVTLDDEGVPCYEIKEGVAWDNIPFTDELKRLALNTRAVCFGSLAQRNEVSRATI 134 (296)
T ss_dssp HHHHHHTTC--CEEEEEESSCCEEEEEC------CCEEECSSCGGGCCCCCHHHHHHHHTEEEEEECSGGGSSHHHHHHH
T ss_pred HHHHHHcCC--CEEeecCCCCceEEEEEECCCCCEEEEEecCChhhhCCcchhhHhhhcCCCEEEECChHhcChHHHHHH
Confidence 999999999 777777677999999988878888776554444455654443346678999999988654444567788
Q ss_pred HHHHHHHhh-cCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcH
Q 008161 364 LQAIKISKQ-FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 364 ~~ll~~ak~-~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
..+++.+++ +|++++|||+.+..+|. .+.+.++++++|+|++|..|++.|+|....+..+ ..
T Consensus 135 ~~~~~~a~~~~~~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~------------~~ 197 (296)
T 2qhp_A 135 NRFLDTMPDIDGQLKIFDINLRQDFYT-----KEVLRESFKRCNILKINDEELVTISRMFGYPGID------------LQ 197 (296)
T ss_dssp HHHHHHSCCTTSCEEEEECCCCTTCCC-----HHHHHHHHHHCSEEEEEHHHHHHHHHHTTCTTSC------------HH
T ss_pred HHHHHHHHhcCCCEEEEECcCCccccC-----HHHHHHHHHHCCEEECCHHHHHHHhcccCCCCCC------------HH
Confidence 888998887 69999999998777774 3456778899999999999999998754221111 23
Q ss_pred HHHHHHHhc-CCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008161 443 EVIAPLWHE-NLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 443 e~~~~L~~~-g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
+.++.+++. |++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++| .++++
T Consensus 198 ~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vdttGAGD~f~a~~~~~l~~g-------~~~~~ 265 (296)
T 2qhp_A 198 DKCWILLAKYNLKMLILTCGINGSYVFTPGVVSFQET---PKVP--VADTVGAGDSFTAAFCASILNG-------KSVPE 265 (296)
T ss_dssp HHHHHHHHHTTCSEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHHT-------CCHHH
T ss_pred HHHHHHHHhcCCCEEEEeecCCCeEEEECCeEEEeCC---CCCc--cccCCCchHHHHHHHHHHHHcC-------CCHHH
Confidence 566777775 999999999999999998764444443 3454 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHccccccCCCCCC
Q 008161 522 TIKYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~~pt 545 (575)
|+++|+++|++++++.|+...+|+
T Consensus 266 a~~~a~~~aa~~v~~~G~~~~~~~ 289 (296)
T 2qhp_A 266 AHKLAVEVSAYVCTQSGAMPELPV 289 (296)
T ss_dssp HHHHHHHHHHHHHTSSSSSCCCCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcH
Confidence 999999999999999999866543
No 34
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=3.9e-40 Score=346.02 Aligned_cols=320 Identities=16% Similarity=0.190 Sum_probs=246.7
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
.-.|+|++||+.+.++...+. ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 10 ~~~~~~~~~ge~l~~~~~~~~---------------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~ 74 (351)
T 2afb_A 10 HHHMKVVTFGEIMLRLSPPDH---------------KRIFQTDSFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGD 74 (351)
T ss_dssp CCCCEEEEESCCEEEEECSTT---------------CCGGGCSEEEEEEECHHHHHHHHHHHTTSEEEEEEEECSSHHHH
T ss_pred cccceEEEechhhheecCCCC---------------ccccccceeeEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHH
Confidence 345899999999999875431 01112467889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeE-EEE-e-cCCccccCCccccchh-hhccCcEEEEecccc-cc
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLR-MTC-V-KPCAEDALTKSEINID-VLKEAKMFYFSTHSM-LE 356 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~-~~~-~-~~ga~~~lt~e~i~~~-~l~~ad~v~~sg~~l-~~ 356 (575)
++++.|++.||++.++.. .+.+|+++++.++. |.+. ++. . ...+...++++++.+. .+..+++||++++.. ++
T Consensus 75 ~i~~~L~~~gv~~~~v~~-~~~~t~~~~v~~~~-~~r~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 152 (351)
T 2afb_A 75 AAAGHLRKFGVKTDYIAR-GGNRIGIYFLEIGA-SQRPSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITPPLG 152 (351)
T ss_dssp HHHHHHHHTTCBCTTEEE-CSSCCCEEEEECCB-TTBCCEEEEECTTCTTTTCCGGGCCHHHHTTTEEEEEEETTSGGGS
T ss_pred HHHHHHHHcCCcceeEEE-CCCcceEEEEEecC-CCCcceEEEeCCCChhhhCChhhCCHHHhhcCCCEEEEeCcccccC
Confidence 999999999999999886 45689998887764 4443 322 2 2334556777777643 468899999998643 34
Q ss_pred cchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccccc
Q 008161 357 RNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSK 436 (575)
Q Consensus 357 ~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~ 436 (575)
+...+.+.++++.+++.|++|+|||+.+..+|. .....+.+..+++++|+|++|..|+..|+|...... +......+
T Consensus 153 ~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~-~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~-~~~~~~~~- 229 (351)
T 2afb_A 153 KELPLILEDALKVANEKGVTVSCDLNYRARLWT-KEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGL-DLKTGKLN- 229 (351)
T ss_dssp TTHHHHHHHHHHHHHHHTCEEEEECCCCTTTCC-HHHHHHHHHHHGGGCSEEEECHHHHHHHHCCCCSCC--------C-
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEeCCCchhcCC-hHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCcccc-cccccccc-
Confidence 455688899999999999999999998877885 234567788899999999999999999998754200 00000000
Q ss_pred ccCCcHHHHHHHHhc-CCcEEEEecCCcce--------EEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHH
Q 008161 437 FVHYEPEVIAPLWHE-NLKVLFVTNGTSKV--------HYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 437 ~~~~~~e~~~~L~~~-g~k~VVVT~G~~Ga--------~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~ 507 (575)
.+...+.++.|+.. |++.||||+|.+|+ +++.++...++++ ++++ ++|||||||+|+|||+++|+
T Consensus 230 -~~~~~~~~~~l~~~~g~~~vvvT~G~~G~~~~~~~g~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~ag~~~~l~ 303 (351)
T 2afb_A 230 -REAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVMVFENGQPHFSNR---YEIH--IVDRVGAGDSFAGALIYGSL 303 (351)
T ss_dssp -HHHHHHHHHHHHHHHCCSEEEEEEEECSCSSEEEEEEEEEETTEEEECCC---EEEE--CSCCTTHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHcCCCEEEEEeCCcCccccccceeEEEeCCcEEEcCC---CCCc--cCCCCCchHHHHHHHHHHHH
Confidence 00012456667664 99999999999975 6666543333333 3343 79999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 508 VQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 508 ~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+| +++++|+++|+++|+++|++.|+.. +|++++|+++++.
T Consensus 304 ~g-------~~l~~a~~~A~~~aa~~v~~~G~~~-~~~~~ev~~~l~~ 343 (351)
T 2afb_A 304 MG-------FDSQKKAEFAAAASCLKHTIPGDFV-VLSIEEIEKLASG 343 (351)
T ss_dssp HT-------CCHHHHHHHHHHHHHHHTTSSSSSC-CCCHHHHHHHHTC
T ss_pred cC-------CCHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHhc
Confidence 99 9999999999999999999999975 8999999999975
No 35
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=100.00 E-value=1.5e-40 Score=346.42 Aligned_cols=297 Identities=18% Similarity=0.181 Sum_probs=236.1
Q ss_pred CcEEEEccceeeeeccCCCC-------CCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCC-
Q 008161 205 PLVCCFGSAQHAFVPSGRPA-------NRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGD- 276 (575)
Q Consensus 205 ~~VlviG~~~iD~i~~~~~~-------~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~- 276 (575)
|+|+|+|++++|+++.+... +++|. ..+.+ ....+...+||+++|+|++|++||.++.++|.||+
T Consensus 1 m~i~v~G~~~iD~~~~~~~~~~~~~~~~~~p~------~~~~~-~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~~ 73 (326)
T 3b1n_A 1 MATLICGSIAYDNIMTFEGRFREHILPDQVHL------INLSF-LVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAV 73 (326)
T ss_dssp -CEEEESCCEEEEEEECSSCGGGGCCTTSSSS------CEEEE-ECCSCCCEEECHHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred CcEEEECcceEEEEEecchhhhhhccccccCC------CCcce-ecccceeccCCHHHHHHHHHHHcCCCeeEEEEECCc
Confidence 47999999999999865110 12321 11111 12456678999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccc
Q 008161 277 DEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLE 356 (575)
Q Consensus 277 D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~ 356 (575)
| +|+ +++.|++.||+++++.+.++.+|++++++++.+|++.+.+. .++...+.++++.. +..++++|+++.
T Consensus 74 D-~g~-i~~~L~~~gVd~~~v~~~~~~~T~~~~v~~~~~g~~~~~~~-~ga~~~~~~~~~~~--~~~~~~v~~~~~---- 144 (326)
T 3b1n_A 74 D-AQP-YLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFH-PGAMMQSHVNHAGE--AKDIKLAIVGPD---- 144 (326)
T ss_dssp T-CHH-HHHHHHHHTCEEEEEEEETTCCCEEEEEEECTTCCCEEEEE-CGGGGGGGGSCGGG--CCSCSEEEECSC----
T ss_pred C-HHH-HHHHHHHcCCcccceEEcCCCCceEEEEEECCCCceEEEEe-cChhhhcChhhccc--ccCCCEEEECCc----
Confidence 9 899 99999999999999988777899999999988888776543 56666666555532 278999999753
Q ss_pred cchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccccccc
Q 008161 357 RNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSK 436 (575)
Q Consensus 357 ~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~ 436 (575)
..+.+.++++.++++|++|+|||+.+..+|. .+.+.++++++|+|++|++|+..|+|.....
T Consensus 145 --~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~----------- 206 (326)
T 3b1n_A 145 --GFQGMVQHTEELAQAGVPFIFDPGQGLPLFD-----GATLRRSIELATYIAVNDYEAKLVCDKTGWS----------- 206 (326)
T ss_dssp --CHHHHHHHHHHHHHHTCCEEECCGGGGGGCC-----HHHHHHHHHHCSEEEEEHHHHHHHHHHHCCC-----------
T ss_pred --cHHHHHHHHHHHHHCCCEEEEeCchhhhhcc-----HHHHHHHHHhCCEEecCHHHHHHHhCCCCCC-----------
Confidence 3467788899999999999999987666663 3456778899999999999999998743211
Q ss_pred ccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCc
Q 008161 437 FVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDK 516 (575)
Q Consensus 437 ~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~ 516 (575)
.+ .+++ +++.||||+|++|+++++++...++++ +++. .++|||||||+|+|||+++|++|
T Consensus 207 -----~~---~l~~-~~~~vvvT~G~~Ga~~~~~~~~~~~~~---~~v~-~vvDttGAGDaF~ag~l~~l~~g------- 266 (326)
T 3b1n_A 207 -----ED---EIAS-RVQALIITRGEHGATIRHRDGTEQIPA---VRAE-RVIDPTGCGDAFRGGLLYGIEHG------- 266 (326)
T ss_dssp -----HH---HHHT-TSSEEEEECGGGCEEEEETTEEEEECC---CCCS-CCCCCTTHHHHHHHHHHHHHHTT-------
T ss_pred -----HH---HHHh-cCCEEEEecCCCceEEEECCcEEEeCC---CCCC-CCCCCCCchHHHHHHHHHHHHcC-------
Confidence 12 2333 488999999999999998765444444 3443 16899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 517 GYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 517 ~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++++|+++|+++|+++|++.|+...+|++++|++++++
T Consensus 267 ~~~~~a~~~A~~~aa~~v~~~G~~~~~~~~~ev~~~l~~ 305 (326)
T 3b1n_A 267 FDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFET 305 (326)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSSTTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999889999999998854
No 36
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=100.00 E-value=9.2e-40 Score=342.14 Aligned_cols=309 Identities=14% Similarity=0.168 Sum_probs=239.2
Q ss_pred CCCcEEEEccceeeeeccCCCCCCc------chh------hhhhhhcccccCCCceEEecCChHHHHHHHHHHcC----C
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRL------IDH------EIHERMKDALWAPEKFIRSPGGCTGSAAIALARLG----G 266 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~l------p~~------e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG----~ 266 (575)
..++|+|+|++++|+++.+.. .+ ... +.+.+..+.+.....+...+||+++|+|++|++|| .
T Consensus 5 ~~~~v~viG~~~~D~~~~~~~--~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~lgg~~~~ 82 (345)
T 1bx4_A 5 RENILFGMGNPLLDISAVVDK--DFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQNSIKVAQWMIQQPHK 82 (345)
T ss_dssp CTTCEEEECCCEEEEEEECCH--HHHHHTTCCSSEEEECCGGGHHHHHHHHHHSCCEEEEECHHHHHHHHHHHHHCSSTT
T ss_pred ccccEEEECCcceeEEEecCH--HHHHHcCCCCCcEEEchHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHhcCCCCC
Confidence 456899999999999987531 01 100 00111111122235778999999999999999996 8
Q ss_pred CeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCcc-ccc----hhhh
Q 008161 267 KVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKS-EIN----IDVL 341 (575)
Q Consensus 267 ~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e-~i~----~~~l 341 (575)
++.|+|.||+|.+|+++++.|++.||++.++.. .+.+|++++++++ +|+|+++ ...++...++++ +++ .+.+
T Consensus 83 ~~~~ig~vG~D~~G~~i~~~L~~~gv~~~~v~~-~~~~T~~~~~~~~-~g~r~~~-~~~~a~~~~~~~~~~~~~~~~~~~ 159 (345)
T 1bx4_A 83 AATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQ-NEQPTGTCAACIT-GDNRSLI-ANLAAANCYKKEKHLDLEKNWMLV 159 (345)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHHTTCEEEEEEE-SSSCCCEEEEEEE-TTEEEEE-EECGGGGGCCGGGTTTSHHHHHHH
T ss_pred cEEEEEEeCCChhHHHHHHHHHHcCCceeeeec-CCCCCceEEEEEc-CCceEee-eccchHhhcCcccccCcHHHHHHH
Confidence 999999999999999999999999999999864 5678999999887 6777664 567777778877 775 3567
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCC
Q 008161 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~ 421 (575)
..++++|++|+.+. .+.+.+.++++.++++|+++++|+. .++|. +...+.+.++++++|+|++|+.|++.|+|.
T Consensus 160 ~~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~--~~~~~--~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 233 (345)
T 1bx4_A 160 EKARVCYIAGFFLT--VSPESVLKVAHHASENNRIFTLNLS--APFIS--QFYKESLMKVMPYVDILFGNETEAATFARE 233 (345)
T ss_dssp HHCSEEEEEGGGGG--TCHHHHHHHHHHHHHTTCEEEEECC--SHHHH--HHTHHHHHHHGGGCSEEEEEHHHHHHHHHH
T ss_pred hhCCEEEEEEEecc--CCHHHHHHHHHHHHHcCCEEEEeCC--cHHHH--HHHHHHHHHHhccCCEEeCCHHHHHHHhcc
Confidence 88999999987542 3457888999999999999999985 23442 234556778999999999999999999875
Q ss_pred CCCccccccccccccccCCcHHHHHHHHh------cCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCch
Q 008161 422 KPTEEFDTKNNARSKFVHYEPEVIAPLWH------ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 422 ~~~~~~d~~~~~~~~~~~~~~e~~~~L~~------~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAG 495 (575)
......+ ..+.++.|+. .|++.||||+|++|++++.++...++++++.++.+ ++||||||
T Consensus 234 ~~~~~~~------------~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~~~--vvDttGAG 299 (345)
T 1bx4_A 234 QGFETKD------------IKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKE--IIDTNGAG 299 (345)
T ss_dssp TTCCCCC------------HHHHHHHHHTSCCSCTTSCCEEEEEETTEEEEEECSSCEEEECCCCCCCTT--CCCHHHHH
T ss_pred cCCCCCC------------HHHHHHHHHhcccccccCCCEEEEEeCCCCeEEEECCeEEEEeccccCcCc--cccCCCcc
Confidence 4211111 2356677777 58999999999999999977655555543211113 89999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCC
Q 008161 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt 545 (575)
|+|+|||+++|++| +++++|+++|+++|+++|++.|+. +|+
T Consensus 300 Daf~ag~~~~l~~g-------~~~~~a~~~A~~~aa~~v~~~G~~--~p~ 340 (345)
T 1bx4_A 300 DAFVGGFLSQLVSD-------KPLTECIRAGHYAASIIIRRTGCT--FPE 340 (345)
T ss_dssp HHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHHHTTSSSSC--CCS
T ss_pred hHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHhccCCC--CCC
Confidence 99999999999999 999999999999999999999985 554
No 37
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=100.00 E-value=4.1e-39 Score=333.82 Aligned_cols=301 Identities=14% Similarity=0.076 Sum_probs=238.8
Q ss_pred CcEEEEccceeee-eccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008161 205 PLVCCFGSAQHAF-VPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 205 ~~VlviG~~~iD~-i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i 283 (575)
|-+.|.+++++|+ ++.+. ++.. ........+...+||+++|+|++|++||.++.++|.||+| +|+++
T Consensus 3 mi~tvt~np~iD~~~~~v~---~~~~--------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i 70 (320)
T 3ie7_A 3 LIYTITLNPAIDRLLFIRG---ELEK--------RKTNRVIKTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSD-NLDKL 70 (320)
T ss_dssp CEEEEESSCEEEEEEEESS---SCCT--------TSCCCCSEEEEEEESHHHHHHHHHHHHTCCEEEEEEEEST-THHHH
T ss_pred eEEEEecchHHeeeEEEcC---CccC--------CCeeEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHH
Confidence 4577888999999 87763 3321 1233457788999999999999999999999999999998 99999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCC--eEEEEecCCccccCCccccch------hhhccCcEEEEeccccc
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGR--LRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSML 355 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ge--r~~~~~~~ga~~~lt~e~i~~------~~l~~ad~v~~sg~~l~ 355 (575)
++.|++.||+++++....+ +|+.++++++ +|+ ++++ ...++ .+++++++. ..+..+++||++|+..
T Consensus 71 ~~~l~~~gv~~~~v~~~~~-~t~~~~~~~~-~g~~~~~~~-~~~g~--~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~- 144 (320)
T 3ie7_A 71 YAILKEKHINHDFLVEAGT-STRECFVVLS-DDTNGSTMI-PEAGF--TVSQTNKDNLLKQIAKKVKKEDMVVIAGSPP- 144 (320)
T ss_dssp HHHHHHTTCCBCCEEETTC-CCEEEEEEEE-TTCSCCEEE-ECCCC--CCCHHHHHHHHHHHHHHCCTTCEEEEESCCC-
T ss_pred HHHHHHcCCceEEEEecCC-CCceEEEEEE-CCCceeEEE-eCCCC--CCCHHHHHHHHHHHHHHhcCCCEEEEeCCCC-
Confidence 9999999999999855554 8999999998 788 7664 44443 566665542 4678899999988632
Q ss_pred ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc-cCeEEeCCHHHHHHhhCCCCCcccccccccc
Q 008161 356 ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 356 ~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
.....+.+.++++.++++|++|+|||+. ..+..++. ++|+|++|++|+..|+|.....
T Consensus 145 ~~~~~~~~~~~~~~a~~~g~~v~~D~~~------------~~l~~~l~~~~dil~~N~~E~~~l~g~~~~~--------- 203 (320)
T 3ie7_A 145 PHYTLSDFKELLRTVKATGAFLGCDNSG------------EYLNLAVEMGVDFIKPNEDEVIAILDEKTNS--------- 203 (320)
T ss_dssp TTCCHHHHHHHHHHHHHHTCEEEEECCH------------HHHHHHHHHCCSEECCBTTGGGGGSCTTCCC---------
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEEECCh------------HHHHHHHhcCCeEEeeCHHHHHHHhCCCcCC---------
Confidence 2345678899999999999999999852 12344444 8999999999999999876431
Q ss_pred ccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCC
Q 008161 435 SKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLIT 514 (575)
Q Consensus 435 ~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~ 514 (575)
..+.+.++... ++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 204 ------~~~~~~~~~~~-~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~ag~~~~l~~g----- 266 (320)
T 3ie7_A 204 ------LEENIRTLAEK-IPYLVVSLGAKGSICAHNGKLYQVIP---PKVQ--ERNDTGAGDVFVGAFIAGLAMN----- 266 (320)
T ss_dssp ------HHHHHHHHTTT-CSEEEEECGGGCEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-----
T ss_pred ------CHHHHHHHHhh-CCEEEEEcCCCceEEEeCCcEEEEeC---CccC--CCCCcCchHHHHHHHHHHHHcC-----
Confidence 12445555555 89999999999999998876555554 3454 8999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCCCCCcccccccc
Q 008161 515 DKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPDPYGIRSMTEKE 567 (575)
Q Consensus 515 d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~~~~~~~~~~~~ 567 (575)
+++++|+++|+++|+++|++.|+ ++|++++|++++++. .++.+++.+
T Consensus 267 --~~~~~a~~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~~--~i~~~~~~~ 313 (320)
T 3ie7_A 267 --MPITETLKVATGCSASKVMQQDS--SSFDLEAAGKLKNQV--SIIQLEERE 313 (320)
T ss_dssp --CCHHHHHHHHHHHHHHHHTSSSS--SCCCHHHHHHHGGGC--EEEECC---
T ss_pred --CCHHHHHHHHHHHHHHHHhCcCC--CCCCHHHHHHHhhCe--EEEEccccc
Confidence 99999999999999999999995 689999999999664 345554443
No 38
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=100.00 E-value=6.3e-39 Score=330.58 Aligned_cols=296 Identities=16% Similarity=0.146 Sum_probs=234.2
Q ss_pred CCcEEEE-ccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 204 PPLVCCF-GSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 204 ~~~Vlvi-G~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
|++|+++ +++++|++..+. ++.. ........+...+||+++|+|++|++||.++.++|.||+| +|++
T Consensus 1 m~~i~~v~~n~~~D~~~~v~---~~~~--------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~ 68 (309)
T 3umo_A 1 MVRIYTLTLAPSLDSATITP---QIYP--------EGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEH 68 (309)
T ss_dssp CCCEEEECSSCEEEEEEEES---CCCS--------SSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHH
T ss_pred CCcEEEEecchhheEEEEcC---cccC--------CCeEEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHH
Confidence 5567766 569999999873 3321 1223457788999999999999999999999999999998 9999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEEEc-CCCCeEEEEecCCccccCCccccch--h---hhccCcEEEEecccccc
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG-KRGRLRMTCVKPCAEDALTKSEINI--D---VLKEAKMFYFSTHSMLE 356 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd-~~Ger~~~~~~~ga~~~lt~e~i~~--~---~l~~ad~v~~sg~~l~~ 356 (575)
+++.|++.||+++++.+.. .|++++++++ .+|++.++ ...++ .+++++++. + .+..++++|++|+.. .
T Consensus 69 i~~~l~~~gv~~~~v~~~~--~t~~~~~~~~~~~g~~~~~-~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 142 (309)
T 3umo_A 69 LVSLLADENVPVATVEAKD--WTRQNLHVHVEASGEQYRF-VMPGA--ALNEDEFRQLEEQVLEIESGAILVISGSLP-P 142 (309)
T ss_dssp HHHHHHHTTCCEEEEECSS--CCCCCEEEEETTTCCEEEE-ECCCC--CCCHHHHHHHHHHHTTSCTTCEEEEESCCC-T
T ss_pred HHHHHHHcCCceEEEEecC--CCeeEEEEEECCCCcEEEE-EcCCC--CCCHHHHHHHHHHHHhcCCCCEEEEEccCC-C
Confidence 9999999999999987654 3454444444 47887654 55555 366665531 1 135688999998632 2
Q ss_pred cchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhccc--CeEEeCCHHHHHHhhCCCCCcccccccccc
Q 008161 357 RNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL--ADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 357 ~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~--aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
....+.+.++++.++++|++|+|||+ ...+..++++ +|+|++|..|++.|+|....+..+
T Consensus 143 ~~~~~~~~~~~~~a~~~~~~v~~D~~------------~~~l~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~------ 204 (309)
T 3umo_A 143 GVKLEKLTQLISAAQKQGIRCIVDSS------------GEALSAALAIGNIELVKPNQKELSALVNRELTQPDD------ 204 (309)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEECC------------HHHHHHHTSSCCBSEECCBHHHHHHHHTSCCCSTTH------
T ss_pred CCCHHHHHHHHHHHHhcCCEEEEECC------------cHHHHHHhccCCCeEEEeCHHHHHHHhCCCCCCHHH------
Confidence 34568889999999999999999985 1235667777 599999999999999976432211
Q ss_pred ccccCCcHHHHHHHHhcCC-cEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCC
Q 008161 435 SKFVHYEPEVIAPLWHENL-KVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI 513 (575)
Q Consensus 435 ~~~~~~~~e~~~~L~~~g~-k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~ 513 (575)
..+.++.|++.+. +.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 205 ------~~~~~~~l~~~g~~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGD~f~a~~~~~l~~g---- 269 (309)
T 3umo_A 205 ------VRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVP---PPVK--SQSTVGAGDSMVGAMTLKLAEN---- 269 (309)
T ss_dssp ------HHHHHHHHHHTTSBSCEEEECGGGCEEEECSSCEEEECC---CSCC--CSCCTTHHHHHHHHHHHHHHTT----
T ss_pred ------HHHHHHHHHHcCCCcEEEEEcCcccEEEEECCcEEEEeC---CCcC--CCCCcChHHHHHHHHHHHHHcC----
Confidence 2366778888886 8999999999999998876655554 3444 8999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 514 TDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 514 ~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++++|+++|+++|+++|++.|+. +|++++|++++++
T Consensus 270 ---~~~~~a~~~A~~~aa~~v~~~G~~--~~~~~ev~~~l~~ 306 (309)
T 3umo_A 270 ---ASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYAY 306 (309)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSSTTC--CCCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHH
Confidence 999999999999999999999994 8999999999854
No 39
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=100.00 E-value=5.4e-39 Score=334.98 Aligned_cols=297 Identities=14% Similarity=0.084 Sum_probs=233.5
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
..+|.++|+|++++|++.... ++.. ++ ......+...+||+++|+|++|++||.++.++|.||+ .+|+
T Consensus 18 ~~~Mi~~v~G~~~~D~~~~~~---~~~~-------g~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~-~~G~ 85 (330)
T 2jg1_A 18 GSHMILTLTLNPSVDISYPLT---ALKL-------DD-VNRVQEVSKTAGGKGLNVTRVLAQVGEPVLASGFIGG-ELGQ 85 (330)
T ss_dssp SSCCEEEEESSCEEEEEEEES---CCCT-------TS-EEEESCCEEEEECHHHHHHHHHHHHTCCEEEEEEEEH-HHHH
T ss_pred CCcEEEEEecchhheEEEecC---CccC-------Cc-eEEeceEEEcCCchHHHHHHHHHHhCCCeEEEEEecc-hhHH
Confidence 445778899999999998763 2321 11 1123567889999999999999999999999999996 6999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEeccccc
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSML 355 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~------~~l~~ad~v~~sg~~l~ 355 (575)
++++.|++.||+++++.+.+ .|++++++++.+ ++. .+...++ .+++++++. ..+..+++||++|+...
T Consensus 86 ~l~~~L~~~gV~~~~v~~~~--~t~~~~~~v~~~-~~~-~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 159 (330)
T 2jg1_A 86 FIAKKLDHADIKHAFYNIKG--ETRNCIAILHEG-QQT-EILEQGP--EIDNQEAAGFIKHFEQMMEKVEAVAISGSLPK 159 (330)
T ss_dssp HHHHHHHHTTCEECCEEESS--CCEEEEEEEETT-EEE-EEEECCC--BCCHHHHHHHHHHHHHHGGGCSEEEEESCCCB
T ss_pred HHHHHHHHCCCceeEEEccC--CCeeEEEEEeCC-CcE-EEECCCC--CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 99999999999999987754 378888888765 544 4454554 466655431 23678999999885432
Q ss_pred ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc---cCeEEeCCHHHHHHhhCCCCC-ccccccc
Q 008161 356 ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT---LADVIEVTKQELEFLCGIKPT-EEFDTKN 431 (575)
Q Consensus 356 ~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~---~aDII~~N~~Ea~~L~g~~~~-~~~d~~~ 431 (575)
....+.+.++++.++++|++|+|||+. ..+.++++ ++|+|++|++|+..|+|.... +..+
T Consensus 160 -~~~~~~~~~~~~~a~~~g~~v~~D~~~------------~~l~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~--- 223 (330)
T 2jg1_A 160 -GLNQDYYAQIIERCQNKGVPVILDCSG------------ATLQTVLENPYKPTVIKPNISELYQLLNQPLDESLES--- 223 (330)
T ss_dssp -TSCTTHHHHHHHHHHTTTCCEEEECCH------------HHHHHHHTSSSCCSEECCBHHHHHHHTTSCCCCCHHH---
T ss_pred -CCCHHHHHHHHHHHHHCCCEEEEECCc------------HHHHHHHhccCCceEEEeCHHHHHHHhCCCCCCCHHH---
Confidence 234567888999999999999999861 12445565 899999999999999987532 1101
Q ss_pred cccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCC
Q 008161 432 NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPH 511 (575)
Q Consensus 432 ~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~ 511 (575)
..+.++.|++.|++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 224 ---------~~~~~~~l~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~~~~l~~g-- 287 (330)
T 2jg1_A 224 ---------LKQAVSQPLFEGIEWIIVSLGAQGAFAKHNHTFYRVNI---PTIS--VLNPVGSGDSTVAGITSAILNH-- 287 (330)
T ss_dssp ---------HHHHHHSGGGTTCSEEEEECGGGCEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHHTT--
T ss_pred ---------HHHHHHHHHHcCCCEEEEeecCCceEEEeCCCEEEEeC---CCcc--ccCCCcHHHHHHHHHHHHHHcC--
Confidence 12456777788999999999999999998765445554 3454 8999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 512 LITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 512 ~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++++|+++|+++|+++|++.|+. +|+++++++++++
T Consensus 288 -----~~l~~al~~A~a~aa~~v~~~G~~--~~~~~ev~~~~~~ 324 (330)
T 2jg1_A 288 -----ENDHDLLKKANTLGMLNAQEAQTG--YVNLNNYDDLFNQ 324 (330)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTSSSSS--CCCGGGHHHHHTT
T ss_pred -----CCHHHHHHHHHHHHHHHhcCcCCC--CCCHHHHHHHHhc
Confidence 999999999999999999999984 7999999999854
No 40
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=2.8e-39 Score=337.18 Aligned_cols=298 Identities=14% Similarity=0.142 Sum_probs=234.9
Q ss_pred CCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccc--cCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHH
Q 008161 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDAL--WAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYG 280 (575)
Q Consensus 203 ~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~--~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G 280 (575)
-.|.|+|+|++++|++.... ++. ..+.. +++..+...+||+++|+|++|++||.++.++|.||+| +|
T Consensus 11 ~~~~~~v~G~~~vD~~~~~~---~~~-------~g~~~~~s~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~d-~G 79 (331)
T 2ajr_A 11 HHMVLTVTLNPALDREIFIE---DFQ-------VNRLYRINDLSKTQMSPGGKGINVSIALSKLGVPSVATGFVGGY-MG 79 (331)
T ss_dssp -CCEEEEESSCEEEEEEECT---TCC-------SSCEEECCSGGGEEEEEESHHHHHHHHHHHTTCCEEEEEEEEHH-HH
T ss_pred cceEEEEecchHHeEEEEcC---Ccc-------CCceEEeccccceEEecCcHHHHHHHHHHHcCCCeEEEEEecCc-hH
Confidence 35789999999999998763 221 11211 1226788999999999999999999999999999998 99
Q ss_pred HHHHHHHHhCC--CccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecc
Q 008161 281 QAMLYYMNVNN--VQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTH 352 (575)
Q Consensus 281 ~~i~~~L~~~G--Vdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~------~~l~~ad~v~~sg~ 352 (575)
+++++.|++.| |+++++.+.+ .|++++++++.+|++.+.+..+++ .+++++++. ..+..++++|++|+
T Consensus 80 ~~i~~~L~~~g~~V~~~~v~~~~--~t~~~~~~v~~~g~~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~v~~~g~ 155 (331)
T 2ajr_A 80 KILVEELRKISKLITTNFVYVEG--ETRENIEIIDEKNKTITAINFPGP--DVTDMDVNHFLRRYKMTLSKVDCVVISGS 155 (331)
T ss_dssp HHHHHHHHHHCTTEEEEEEEESS--CCEEEEEEEETTTTEEEEEECCCC--CCCHHHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHHcCCccceEEEEcCC--CCeEEEEEEeCCCceEEEEeCCCC--CCCHHHHHHHHHHHHHhcccCCEEEEECC
Confidence 99999999999 9999987754 478888888878887344555554 366665531 34678999999975
Q ss_pred cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc---cCeEEeCCHHH-HHHhhCCCCCcccc
Q 008161 353 SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT---LADVIEVTKQE-LEFLCGIKPTEEFD 428 (575)
Q Consensus 353 ~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~---~aDII~~N~~E-a~~L~g~~~~~~~d 428 (575)
... ....+.+.++++.++++|++|+|||+. ..+.++++ ++|+|++|++| ++.|+|....+..+
T Consensus 156 ~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~------------~~~~~~l~~~~~~dil~~N~~E~~~~l~g~~~~~~~~ 222 (331)
T 2ajr_A 156 IPP-GVNEGICNELVRLARERGVFVFVEQTP------------RLLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDD 222 (331)
T ss_dssp CCT-TSCTTHHHHHHHHHHHTTCEEEEECCH------------HHHHHHHHSSCCCSEECCCCTTCCSCBTTBCCCSHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHcCCEEEEECCh------------HHHHHHHhcCCCCeEEEeCccchHHHHhCCCCCCHHH
Confidence 321 223567888999999999999999862 12334444 49999999999 99998865332111
Q ss_pred ccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEe-cccCCCCCCcccCccCchHHHHHHHHHHHH
Q 008161 429 TKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVL-GTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 429 ~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~-a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~ 507 (575)
..+.++.|++. ++.||||+|++|++++++++..+++ + ++++ ++|||||||+|+|||+++|+
T Consensus 223 ------------~~~~~~~l~~~-~~~vvvT~G~~Ga~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~l~~l~ 284 (331)
T 2ajr_A 223 ------------YVKLAEKLAEK-SQVSVVSYEVKNDIVATREGVWLIRSK---EEID--TSHLLGAGDAYVAGMVYYFI 284 (331)
T ss_dssp ------------HHHHHHHHHHH-SSEEEEEETTTEEEEECSSCEEEEEES---SCCC--GGGCTTHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHh-cCEEEEeecCCceEEEeCCcEEEEecC---Cccc--ccCCCchHHHHHHHHHHHHH
Confidence 12566777777 9999999999999999877555555 4 3454 89999999999999999999
Q ss_pred -cCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 508 -VQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 508 -~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+| +++++|+++|+++|+++|++.|+ .+|+++++++++++
T Consensus 285 ~~g-------~~~~~al~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~ 324 (331)
T 2ajr_A 285 KHG-------ANFLEMAKFGFASALAATRRKEK--YMPDLEAIKKEYDH 324 (331)
T ss_dssp HHC-------SCHHHHHHHHHHHHHHHTTSSSC--CCCCHHHHHTTGGG
T ss_pred HcC-------CCHHHHHHHHHHHHHHHHcCcCc--CCCCHHHHHHHHhh
Confidence 99 99999999999999999999998 47999999999853
No 41
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=100.00 E-value=2.6e-39 Score=340.83 Aligned_cols=298 Identities=15% Similarity=0.145 Sum_probs=226.3
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
..+++|+|||++++|++..+. .+++.++. +.. ......+...+||+ +|+|++|++||.+|.++|.||+|.+|+
T Consensus 51 ~~~~~ilvvG~~~~D~~~~g~-v~r~~p~~----p~~-~~~~~~~~~~~GG~-~NvA~~la~LG~~v~~ig~vG~D~~G~ 123 (352)
T 4e84_A 51 LARSRVLVVGDVMLDRYWFGN-VDRISPEA----PVP-VVHVQRQEERLGGA-ANVARNAVTLGGQAGLLCVVGCDEPGE 123 (352)
T ss_dssp HTTCEEEEEECEEEEEEEEEE-EEEECSSS----SSE-EEEEEEEEEEEEEH-HHHHHHHHHTTCEEEEEEEEESSHHHH
T ss_pred cCCCcEEEECccceEEEEeec-ccccCCCC----Ccc-eEEeeEEEEecChH-HHHHHHHHHcCCCEEEEEEeCCChhHH
Confidence 456789999999999997621 12331100 000 11235678899998 899999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccch
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
.+++.|++.||++ .+...++.+|++++++++.++++..+....+....+..+.++ ...+..+++||++|+... .
T Consensus 124 ~i~~~L~~~GV~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~---~ 199 (352)
T 4e84_A 124 RIVELLGSSGVTP-HLERDPALPTTIKLRVLARQQQLLRVDFEAMPTHEVLLAGLARFDVLLPQHDVVLMSDYAKG---G 199 (352)
T ss_dssp HHHHHHTTTSCEE-EEEEETTSCCCEEEEEEESSCEEEEEEECCCCCHHHHHHHHHHHHHHGGGCSEEEEECCSSS---S
T ss_pred HHHHHHHHcCCce-eeEECCCCCCceEEEEEcCCceEEEEEcCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCC---C
Confidence 9999999999999 455566779999999988655543322223322222222121 356789999999976421 1
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccC
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+.++++.++++|++|+|||+.. .| .+++++|+|+||+.|++.|+| ......+
T Consensus 200 ~~~~~~~~~~a~~~g~~v~~D~~~~--~~-----------~~l~~~dil~pN~~Ea~~l~g-~~~~~~~----------- 254 (352)
T 4e84_A 200 LTHVTTMIEKARAAGKAVLVDPKGD--DW-----------ARYRGASLITPNRAELREVVG-QWKSEDD----------- 254 (352)
T ss_dssp CSSHHHHHHHHHHTTCEEEEECCSS--CC-----------STTTTCSEECCBHHHHHHHHC-CCSSHHH-----------
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCc--ch-----------hhccCCcEEcCCHHHHHHHhC-CCCCHHH-----------
Confidence 2236788899999999999999742 33 367899999999999999998 3221111
Q ss_pred CcHHHHHHHHh-cCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchh
Q 008161 440 YEPEVIAPLWH-ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 440 ~~~e~~~~L~~-~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.|+. .|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 255 -~~~~a~~l~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~pa---~~v~--vvDttGAGDaF~ag~l~~l~~g-------~~ 321 (352)
T 4e84_A 255 -LRARVANLRAELDIDALLLTRSEEGMTLFSAGGELHAPA---LARE--VFDVSGAGDTVIATVATMLGAG-------VP 321 (352)
T ss_dssp -HHHHHHHHHHHHTCSEEEEECGGGCEEEEETTEEEEECC---CCSC--CSCCTTHHHHHHHHHHHHHHTT-------CC
T ss_pred -HHHHHHHHHHHhCCCEEEEEcCCCcEEEEECCceEEecC---CCcC--ccCCccccHHHHHHHHHHHHcC-------CC
Confidence 1255667775 5999999999999999998765555554 3454 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCCCHHHHH
Q 008161 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKGGME 550 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve 550 (575)
+++|+++|+++|+++|++.|+.. |+++||+
T Consensus 322 l~~al~~A~aaaa~~v~~~Ga~~--~t~~el~ 351 (352)
T 4e84_A 322 LVDAVVLANRAAGIVVGKLGTAT--VDYDELF 351 (352)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSCC--CCHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCcc--CCHHHhc
Confidence 99999999999999999999964 6999886
No 42
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=100.00 E-value=1.7e-38 Score=327.28 Aligned_cols=294 Identities=15% Similarity=0.145 Sum_probs=225.6
Q ss_pred CCcEEEE-ccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008161 204 PPLVCCF-GSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 204 ~~~Vlvi-G~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~ 282 (575)
|++|+++ |++++|++.... ++.. ........+...+||+++|+|++|++||.++.++|.||+| +|++
T Consensus 1 m~~I~~v~g~~~~D~~~~~~---~~~~--------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~ 68 (309)
T 3cqd_A 1 MVRIYTLTLAPSLDSATITP---QIYP--------EGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEH 68 (309)
T ss_dssp CCCEEEECSSCEEEEEEEES---CCCS--------SSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHH
T ss_pred CceEEEEeccchheEEEEcC---CCcC--------CCeeeccceeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHH
Confidence 4567755 699999998763 2211 1122345788999999999999999999999999999997 9999
Q ss_pred HHHHHHhCCCccceEEEcCCCCCeEEEEE-EcCCCCeEEEEecCCccccCCccccc------hhhhccCcEEEEeccccc
Q 008161 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMK-IGKRGRLRMTCVKPCAEDALTKSEIN------IDVLKEAKMFYFSTHSML 355 (575)
Q Consensus 283 i~~~L~~~GVdt~~v~~~~~~~T~~~~i~-vd~~Ger~~~~~~~ga~~~lt~e~i~------~~~l~~ad~v~~sg~~l~ 355 (575)
+++.|++.||+++++.+.++ |++++++ ++.+|++.+ +..+++ .+++++++ ...++. +++|++|+...
T Consensus 69 i~~~l~~~gv~~~~v~~~~~--t~~~~~~~~~~~g~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~ 142 (309)
T 3cqd_A 69 LVSLLADENVPVATVEAKDW--TRQNLHVHVEASGEQYR-FVMPGA--ALNEDEFRQLEEQVLEIESG-AILVISGSLPP 142 (309)
T ss_dssp HHHHHHHTTCCEEEEECSSC--CCCCEEEEETTTCCEEE-EECCCC--CCCHHHHHHHHHHHHTSCTT-CEEEEESCCCT
T ss_pred HHHHHHHcCCCceeEEcCCC--CeeEEEEEEcCCCCEEE-EEcCCC--CCCHHHHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence 99999999999999876543 5556666 787888654 455554 35555543 123567 99999986332
Q ss_pred ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHH-hcccC-eEEeCCHHHHHHhhCCCCCccccccccc
Q 008161 356 ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ-AWTLA-DVIEVTKQELEFLCGIKPTEEFDTKNNA 433 (575)
Q Consensus 356 ~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~-ll~~a-DII~~N~~Ea~~L~g~~~~~~~d~~~~~ 433 (575)
....+.+.++++.++++|++|+|||+.. .+.. +.+++ |+|++|.+|++.|+|....+..+
T Consensus 143 -~~~~~~~~~~~~~a~~~g~~v~~D~~~~------------~~~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~----- 204 (309)
T 3cqd_A 143 -GVKLEKLTQLISAAQKQGIRCIVDSSGE------------ALSAALAIGNIELVKPNQKELSALVNRELTQPDD----- 204 (309)
T ss_dssp -TCCHHHHHHHHHHHHTTTCEEEEECCHH------------HHHHHTTTCCBSEECCBHHHHHHHHTSCCCSTTH-----
T ss_pred -CCCHHHHHHHHHHHHHcCCeEEEECChH------------HHHHHHHhCCCEEEeeCHHHHHHHhCCCCCCHHH-----
Confidence 2356788899999999999999998621 1223 34788 99999999999999875432111
Q ss_pred cccccCCcHHHHHHHHhcC-CcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCC
Q 008161 434 RSKFVHYEPEVIAPLWHEN-LKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHL 512 (575)
Q Consensus 434 ~~~~~~~~~e~~~~L~~~g-~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~ 512 (575)
..+.++.|++.| ++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 205 -------~~~~~~~l~~~g~~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vdttGAGDaf~a~~~~~l~~g--- 269 (309)
T 3cqd_A 205 -------VRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVP---PPVK--SQSTVGAGDSMVGAMTLKLAEN--- 269 (309)
T ss_dssp -------HHHHHHHHHHTTSBSCEEEECGGGCEEEECSSCEEEECC---CSCC--CCCCTTHHHHHHHHHHHHHHTT---
T ss_pred -------HHHHHHHHHHcCCCCEEEEEecCCceEEEECCceEEEeC---Cccc--cCCCcCcHHHHHHHHHHHHHcC---
Confidence 135677788888 99999999999999998765444543 3444 8999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhC
Q 008161 513 ITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVE 554 (575)
Q Consensus 513 ~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~ 554 (575)
+++++|+++|+++|++++++.|+. +|++++++++++
T Consensus 270 ----~~~~~a~~~A~~~aa~~~~~~G~~--~~~~~~v~~~~~ 305 (309)
T 3cqd_A 270 ----ASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYA 305 (309)
T ss_dssp ----CCHHHHHHHHHHHHHHHTC-------CCCHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHcCcCCC--CCCHHHHHHHHH
Confidence 999999999999999999999984 699999999875
No 43
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=100.00 E-value=1.5e-38 Score=338.16 Aligned_cols=312 Identities=16% Similarity=0.169 Sum_probs=234.2
Q ss_pred CCCCcEEEEccceeeeeccCCCCCC-c-----chh-h------hhhhhcccccCCCceEEecCChHHHHHHHHHHc---C
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANR-L-----IDH-E------IHERMKDALWAPEKFIRSPGGCTGSAAIALARL---G 265 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~-l-----p~~-e------~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarL---G 265 (575)
+.+++|+|+|++++|+++.+. + + |.. + .+.+....+ .+..+...+||+++|+|++|++| |
T Consensus 30 ~~~~~vlviG~~~lD~~~~~~---~~~~~~~~~~~g~~~~~~~~~~p~~~~~-~~~~~~~~~GG~~~NvA~~la~Lg~~g 105 (383)
T 2abs_A 30 TGPMRVFAIGNPILDLVAEVP---SSFLDEFFLKRGDATLATPEQMRIYSTL-DQFNPTSLPGGSALNSVRVVQKLLRKP 105 (383)
T ss_dssp CCCCCEEEECCCEEEEEEECC---HHHHHHTTCCTTCEEECCGGGGGGGGTG-GGGCCEEEEESHHHHHHHHHHHHHCST
T ss_pred CCCceEEEECcchheeEeccC---HHHHHhcCCCCCceeechhhHHHHHHhh-ccccceeeCCChHHHHHHHHHHhccCC
Confidence 456789999999999998752 2 2 100 0 011112222 34567889999999999999999 8
Q ss_pred CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCc
Q 008161 266 GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAK 345 (575)
Q Consensus 266 ~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad 345 (575)
.++.|+|.||+|.+|+++++.|++.||++.++. ..+.+|++++++++ +|+|+++ ...++...+++++.....+..++
T Consensus 106 ~~v~~ig~vG~D~~G~~i~~~L~~~GV~~~~v~-~~~~~T~~~~~~~~-~g~r~~~-~~~~a~~~l~~~~~~~~~l~~~~ 182 (383)
T 2abs_A 106 GSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV-APGQSTGVCAVLIN-EKERTLC-THLGACGSFRLPEDWTTFASGAL 182 (383)
T ss_dssp TSEEEEEEECSSHHHHHHHHHHHHHTCEEEEEE-CTTCCCEEEEEEEE-TTEEEEE-EECGGGGGCCCCTTHHHHTTTCC
T ss_pred CcEEEEEEecCChhHHHHHHHHHHcCCceeeee-cCCCCCeEEEEEEc-CCceeEe-eccChhhhCChhhhhHHHhhcCC
Confidence 999999999999999999999999999999986 45678999999987 6887664 56777777777644456788999
Q ss_pred EEEEecccccccchHHHHHHHHHHHhh-cCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCC
Q 008161 346 MFYFSTHSMLERNMKSTTLQAIKISKQ-FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPT 424 (575)
Q Consensus 346 ~v~~sg~~l~~~~~~e~~~~ll~~ak~-~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~ 424 (575)
+||++|+.+. ...+.+.++++.+++ +|+++++|+. .++|. +...+.+.++++++|||++|+.|++.|+|....
T Consensus 183 ~v~~~g~~~~--~~~~~~~~~~~~a~~~~g~~v~~d~~--~~~~~--~~~~~~l~~ll~~~dil~pN~~Ea~~L~g~~~~ 256 (383)
T 2abs_A 183 IFYATAYTLT--ATPKNALEVAGYAHGIPNAIFTLNLS--APFCV--ELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNL 256 (383)
T ss_dssp EEEEEGGGGT--TCHHHHHHHHHHHHTSTTCEEEEECC--CHHHH--HHCHHHHHHHHHTCSEEEEEHHHHHHHHHHHTC
T ss_pred EEEEeeeccc--CCHHHHHHHHHHHHHhcCCEEEEeCC--cHHHH--HHHHHHHHHHHhhCCEEeCCHHHHHHHhcccCc
Confidence 9999987542 345788999999998 8999999975 34442 334566778999999999999999999864311
Q ss_pred cc-cc---ccccccccccCCcHHHHHHHHh------c-CCcEEEEecCCcceEEEe-----cCCCeeEecccCCCCCC-c
Q 008161 425 EE-FD---TKNNARSKFVHYEPEVIAPLWH------E-NLKVLFVTNGTSKVHYYT-----KEDDGAVLGTEDAPLTP-F 487 (575)
Q Consensus 425 ~~-~d---~~~~~~~~~~~~~~e~~~~L~~------~-g~k~VVVT~G~~Ga~v~~-----~~~~~~v~a~~~~~v~~-~ 487 (575)
.. .+ ......+ ...+.++.|.. . |++.||||+|.+|++++. ++...++++ ++++. .
T Consensus 257 ~~~~~~~~s~~~~~~----~~~~~a~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~~---~~v~~~~ 329 (383)
T 2abs_A 257 VAAEKTALSTANKEH----AVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGV---PVVAAEK 329 (383)
T ss_dssp C----------CHHH----HHHHHHHHHHHHHTTCCCSSCCEEEEECTTSCEEEEEECTTSCEEEEEECC---CCCCGGG
T ss_pred ccccccccccccccc----cHHHHHHHHHhccccccccCCCEEEEEcCCCCeEEEEeecCCCCeEEEecC---ccCCcCC
Confidence 00 00 0000000 01245566665 3 899999999999999984 332233333 33311 3
Q ss_pred ccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccC
Q 008161 488 TSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQART 540 (575)
Q Consensus 488 vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~ 540 (575)
++|||||||+|+|||+++|++| +++++|+++|+++|+++|++.|+.
T Consensus 330 vvDttGAGDaF~ag~~~~l~~g-------~~l~~al~~A~a~aa~~v~~~Ga~ 375 (383)
T 2abs_A 330 IVDTNGAGDAFVGGFLYALSQG-------KTVKQCIMCGNACAQDVIQHVGFS 375 (383)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHTSSSCC
T ss_pred cCcCCChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHhcCCcc
Confidence 8999999999999999999999 999999999999999999999985
No 44
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=100.00 E-value=4.1e-38 Score=327.12 Aligned_cols=294 Identities=14% Similarity=0.123 Sum_probs=231.3
Q ss_pred CcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008161 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~ 284 (575)
|.|+|+|++++|++..+. ++. .++ ......+...+||+++|+|++|++||.++.++|.||+ .+|++++
T Consensus 3 m~i~v~g~~~~D~~~~v~---~~~-------~g~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~-~~G~~i~ 70 (323)
T 2f02_A 3 LIVTVTMNPSIDISYLLD---HLK-------LDT-VNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG-FHGAFIA 70 (323)
T ss_dssp CEEEEESSCEEEEEEECS---CCC-------TTS-EEEESCEEEEEESHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHH
T ss_pred eEEEEecCceeEEEEecC---Ccc-------cCC-EEEeceEEEcCCcHHHHHHHHHHHcCCCeEEEEEecc-chHHHHH
Confidence 689999999999998763 221 111 2233578899999999999999999999999999997 6999999
Q ss_pred HHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecccccccc
Q 008161 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSMLERN 358 (575)
Q Consensus 285 ~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~------~~l~~ad~v~~sg~~l~~~~ 358 (575)
+.|++.||+++++.+.+ .|++++++++.+ ++ +.+...++ .+++++++. ..+..+++||++|+... ..
T Consensus 71 ~~L~~~gV~~~~v~~~~--~t~~~~~~~~~~-~~-~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-~~ 143 (323)
T 2f02_A 71 NELKKANIPQAFTSIKE--ETRDSIAILHEG-NQ-TEILEAGP--TVSPEEISNFLENFDQLIKQAEIVTISGSLAK-GL 143 (323)
T ss_dssp HHHHHTTCCBCCEEESS--CCEEEEEEEETT-EE-EEEEECCC--BCCHHHHHHHHHHHHHHHTTCSEEEEESCCCB-TS
T ss_pred HHHHHCCCceeEEEcCC--CCeeEEEEEcCC-Ce-EEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCCC-CC
Confidence 99999999999987754 477777777765 44 44455554 466665531 24578999999875432 12
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhc---ccCeEEeCCHHHHHHhhCCCCC-cc-ccccccc
Q 008161 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW---TLADVIEVTKQELEFLCGIKPT-EE-FDTKNNA 433 (575)
Q Consensus 359 ~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll---~~aDII~~N~~Ea~~L~g~~~~-~~-~d~~~~~ 433 (575)
..+.+..+++.++++|++|+|||+.. .+.+++ +++|+|++|.+|++.|+|.... +. .+
T Consensus 144 ~~~~~~~~~~~a~~~g~~v~~Dp~~~------------~~~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~----- 206 (323)
T 2f02_A 144 PSDFYQELVQKAHAQEVKVLLDTSGD------------SLRQVLQGPWKPYLIKPNLEELEGLLGQDFSENPLAA----- 206 (323)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEECCTH------------HHHHHHHSSCCCSEECCBHHHHHHHHTCCCCSSCHHH-----
T ss_pred ChHHHHHHHHHHHHCCCEEEEECChH------------HHHHHHhccCCCeEEecCHHHHHHHhCCCCCCCcHHH-----
Confidence 45678889999999999999998621 133344 5899999999999999987532 10 01
Q ss_pred cccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCC
Q 008161 434 RSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI 513 (575)
Q Consensus 434 ~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~ 513 (575)
..+.++.|++.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 207 -------~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~a~~~~~l~~g---- 270 (323)
T 2f02_A 207 -------VQTALTKPMFAGIEWIVISLGKDGAIAKHHDQFYRVKI---PTIQ--AKNPVGSGDATIAGLAYGLAKD---- 270 (323)
T ss_dssp -------HHHHHTSGGGTTCSEEEEECGGGCEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHHTT----
T ss_pred -------HHHHHHHHHHcCCCEEEEeecCCceEEEeCCCEEEEcC---CCcc--ccCCccHHHHHHHHHHHHHHcC----
Confidence 12456677778999999999999999998765445554 3454 7999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 514 TDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 514 ~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++++|+++|+++|+++|++.|+ .+|+++++++++.+
T Consensus 271 ---~~~~~a~~~A~~~aa~~v~~~G~--~~~~~~ev~~~~~~ 307 (323)
T 2f02_A 271 ---APAAELLKWGMAAGMANAQERMT--GHVDVENVKKHLMN 307 (323)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHSSSS--SCCCHHHHHHHHTT
T ss_pred ---CCHHHHHHHHHHHHHHHHcCCCc--CCCCHHHHHHHhhc
Confidence 99999999999999999999998 47999999999854
No 45
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=100.00 E-value=6.2e-38 Score=324.50 Aligned_cols=292 Identities=13% Similarity=0.148 Sum_probs=226.2
Q ss_pred CcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCC-CeEEEEEeCCChHHHHH
Q 008161 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGG-KVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 205 ~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~-~v~lvg~VG~D~~G~~i 283 (575)
|+|+|||++++|++... ...+...+||++.|+|++|++||. ++.++|.||+| +|+.+
T Consensus 3 ~~ilviG~~~iD~~~~~---------------------~~~~~~~~GG~~~NvA~~la~LG~~~~~~ig~vG~D-~g~~~ 60 (313)
T 3kd6_A 3 LSLLVIGSLAFDDIETP---------------------FGRSDNTLGGSSTYIALSASYFTDEPIRMVGVVGSD-FGKEH 60 (313)
T ss_dssp CCEEEESCCEEEEEECS---------------------SCEEEEEEECHHHHHHHHHTTTCSSCEEEEEEEETT-SCHHH
T ss_pred ccEEEEeEEEEeeecCC---------------------CCcccccCCCHHHHHHHHHHHhCCCceEEEEecCCC-cHHHH
Confidence 68999999999999642 135678999999999999999999 99999999999 99999
Q ss_pred HHHHHhCCCccceEEEcCCCCCeEEEEE--EcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008161 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMK--IGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GVdt~~v~~~~~~~T~~~~i~--vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||+++++.+.++.+|....-. .+.++.+.+. ...++...+.+. + .+.++++++||++++. .+
T Consensus 61 ~~~L~~~gVd~~~v~~~~~~~T~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~~------~~ 131 (313)
T 3kd6_A 61 FDLLHAKNIDTRGIQVIEDGKTFRWAGRYHYDMNTRDTLD-TQLNVFAEFDPH-V-PQYYRDSKFVCLGNID------PE 131 (313)
T ss_dssp HHHHHHTTEEEEEEEEETTCCCEEEEEEECTTSSCEEEEE-EECGGGTTCCCC-C-CGGGTTCSEEEECSSC------HH
T ss_pred HHHHHHcCCCccceEEcCCCCeeeeeeeeeccccccceee-cccchHhhcCcc-c-hHHHccCCEEEEcCCC------HH
Confidence 9999999999999988776677432111 2233444332 334444445432 2 3567899999997642 24
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCc
Q 008161 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
....+++.+ +.+.+|+||| ..+|. ....+.+.++++++|+|++|++|++.|+|... .
T Consensus 132 ~~~~~~~~~-~~~~~v~~Dp---~~~~~--~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~-----------------~ 188 (313)
T 3kd6_A 132 LQLKVLDQI-DDPKLVVCDT---MNFWI--EGKPEELKKVLARVDVFIVNDSEARLLSGDPN-----------------L 188 (313)
T ss_dssp HHHHHHTTC-SSCSEEEEEC---CHHHH--HHCHHHHHHHHTTCSEEEEEHHHHHHHHSCSC-----------------H
T ss_pred HHHHHHHHH-hhCCEEEEcC---hhhhh--hhhHHHHHHHHhcCCEEEeCHHHHHHHhCCCC-----------------H
Confidence 455666666 5788999997 34563 23456777899999999999999999998531 2
Q ss_pred HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008161 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
.+.++.|++.|++.||||+|++|++++++++..++++ +++. .++|||||||+|+|||+++|++|.. .+..++++
T Consensus 189 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~-~vvdttGAGDaf~a~~~~~l~~g~~--~~~~~l~~ 262 (313)
T 3kd6_A 189 VKTARIIREMGPKTLIIKKGEHGALLFTDNGIFAAPA---FPLE-SIYDPTGAGDTFAGGFIGHLARCGN--TSEAEMRK 262 (313)
T ss_dssp HHHHHHHHTTSCSEEEEECTTSCEEEEETTEEEEECC---CTTC-CCSCCTTHHHHHHHHHHHHHHHHCC--CCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeeCCCcEEEEECCceEEeCC---CCCC-CcCCCCCccHHHHHHHHHHHHcCCC--ccccCHHH
Confidence 3677888888999999999999999998775555554 3441 2799999999999999999999810 00118999
Q ss_pred HHHHHHHHHHHHccccccCCC-CCCHHHHHhhhCCC
Q 008161 522 TIKYAIDCGVRDQWSQARTLG-YPPKGGMEEEVEPD 556 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~-~pt~eeve~~l~~~ 556 (575)
|+++|+++|+++|++.|+... .|++++|+++|+..
T Consensus 263 a~~~a~~~aa~~v~~~G~~~~~~~~~~ev~~~l~~~ 298 (313)
T 3kd6_A 263 AVLYGSAMASFCVEQFGPYRYNDLDLLEVDDRYQSF 298 (313)
T ss_dssp HHHHHHHHHHHHTTSSTTGGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHeecCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999753 58999999998654
No 46
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=100.00 E-value=8.3e-38 Score=323.42 Aligned_cols=283 Identities=14% Similarity=0.137 Sum_probs=221.2
Q ss_pred CCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008161 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~ 281 (575)
..+++|+|||++++|++..+ +++|.+ ............+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 15 ~~~~~i~viG~~~iD~~~~~---~~~p~~-------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~ig~vG~D~~G~ 84 (312)
T 2hlz_A 15 PRGSQILCVGLVVLDVISLV---DKYPKE-------DSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 84 (312)
T ss_dssp --CCEEEEESCCEEEEEEEE---SSCCCT-------TCEEECSEEEEEEESHHHHHHHHHHHHTCCEEEEEEECSSHHHH
T ss_pred CCCCcEEEECcceEEEeecc---ccCCCc-------cceeecccceeccCccHHHHHHHHHHcCCceEEEEEecCchHHH
Confidence 34568999999999999875 345431 11112355678999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCCeEEEEEEc-CCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchH
Q 008161 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG-KRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 282 ~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd-~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
++++.|++.||+++++.+.++.+|++++++++ .+|+|+++ ...++...+++++++...+..+++||++++. .
T Consensus 85 ~l~~~L~~~GV~~~~v~~~~~~~T~~~~~~v~~~~g~r~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~------~ 157 (312)
T 2hlz_A 85 FVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTIL-YYDRSLPDVSATDFEKVDLTQFKWIHIEGRN------A 157 (312)
T ss_dssp HHHHHHHHTTCBCTTEEECSSCCCCEEEEEEETTTCCEEEE-EECCCCCCCCHHHHHTSCGGGEEEEEEECSS------H
T ss_pred HHHHHHHHcCCCCccceeccCCCCCeEEEEEECCCCceEEE-ecCCccccCCHHHhhHhhhccCCEEEEeccC------H
Confidence 99999999999999998876667888877775 47888775 4566666788777754567889999999752 2
Q ss_pred HHHHHHHHHHhhc--------CCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCcccccccc
Q 008161 361 STTLQAIKISKQF--------GGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNN 432 (575)
Q Consensus 361 e~~~~ll~~ak~~--------G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~ 432 (575)
+.+.++++.++++ +++|++|+.... +.+.++++++|+|++|++|+..| |...
T Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~v~~d~~~~~----------~~~~~~l~~~dil~~n~~ea~~l-g~~~--------- 217 (312)
T 2hlz_A 158 SEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPR----------EELFQLFGYGDVVFVSKDVAKHL-GFQS--------- 217 (312)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCEEEEEECSCC----------GGGGGGGGSSSEEEECHHHHHHT-TCCS---------
T ss_pred HHHHHHHHHHHHhcccccCCCCeEEEEEcccch----------HHHHHHHhcCCEEEEcHHHHHHc-CCCC---------
Confidence 4556777777766 789999975321 23567899999999999999987 5321
Q ss_pred ccccccCCcHHHHHHHHhcCC--cEEEEecCCcceEEEecCC-CeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcC
Q 008161 433 ARSKFVHYEPEVIAPLWHENL--KVLFVTNGTSKVHYYTKED-DGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQ 509 (575)
Q Consensus 433 ~~~~~~~~~~e~~~~L~~~g~--k~VVVT~G~~Ga~v~~~~~-~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g 509 (575)
..+.++.+...+. +.||||+|.+|+++++.++ ..+++++ +.++ ++|||||||+|+|||+++|++|
T Consensus 218 --------~~~~~~~l~~~~~~g~~vvvt~G~~G~~~~~~~~~~~~~~~~--~~~~--vvdt~GAGDaf~a~~~~~l~~g 285 (312)
T 2hlz_A 218 --------AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAF--PPPR--VVDTLGAGDTFNASVIFSLSQG 285 (312)
T ss_dssp --------HHHHHHHHGGGSCTTCEEEEECGGGCEEEECTTCCEEEECCC--CCSS--CCCCTTHHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHhcCCCCEEEEEecccCeEEEccCCCEEECCCC--CCCC--cccCCCchHHHHHHHHHHHHcC
Confidence 1245555655433 8999999999999987543 2344432 1233 7999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHccccccC
Q 008161 510 PHLITDKGYLVRTIKYAIDCGVRDQWSQART 540 (575)
Q Consensus 510 ~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~ 540 (575)
+++++|+++|+++|+++|++.|+.
T Consensus 286 -------~~~~~a~~~a~~~aa~~v~~~G~~ 309 (312)
T 2hlz_A 286 -------RSVQEALRFGCQVAGKKCGLQGFD 309 (312)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTSSSSG
T ss_pred -------CCHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999974
No 47
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=2.8e-39 Score=333.96 Aligned_cols=283 Identities=13% Similarity=0.123 Sum_probs=225.5
Q ss_pred ccCCCCcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChH
Q 008161 200 TYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEY 279 (575)
Q Consensus 200 ~~~~~~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~ 279 (575)
++..+++|+|+|++++|++... +++|. ........+...+||+++|+|++|++||.++.++|.||+| +
T Consensus 16 ~~~~~~~v~viG~~~iD~~~~~---~~~p~--------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~ 83 (306)
T 3bf5_A 16 YFQGMRFLAYFGHLNIDVLISV---DSIPR--------EGSVNVKDLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGMK-T 83 (306)
T ss_dssp ---CCEEEEEECCCEEEEEEEC---SCCCS--------SEEEECSEEEEEEEHHHHHHHHHHHHTTCCCEEEEEEETT-T
T ss_pred eccCCCcEEEECCceEEEEEec---CCCCC--------CceEECcceEecCCChHHHHHHHHHHcCCCeEEEEEEeCC-h
Confidence 3456778999999999999875 34441 1111235678899999999999999999999999999999 9
Q ss_pred HHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccch
Q 008161 280 GQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 280 G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
|+++++.|++.||+++++.+.++.+|++++++++. |++++. .+.++...++ +++. ..+++||++++.
T Consensus 84 G~~i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~-g~r~~~-~~~ga~~~~~-~~l~----~~~~~v~~~~~~------ 150 (306)
T 3bf5_A 84 HREYLAMIESMGINTGHVEKFEDESGPICYIATDG-KKQVSF-MHQGAMAAWA-PQLA----DEYEYVHFSTGP------ 150 (306)
T ss_dssp CHHHHHHHHHTTCCCTTEEEETTCCCSEEEEEECS-SCEEEE-EECTHHHHCC-CCCC----SCEEEEEECSSS------
T ss_pred HHHHHHHHHHcCCCchheEecCCCCCceEEEEEcC-CeeEEE-EeCChhhhhh-Hhhc----CCCCEEEECChH------
Confidence 99999999999999999877777789999999987 888775 4566766666 5542 678999998753
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccC
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.++++.+++ +|+||++.. +|.. ..+.+..+++++|+|++|++|++.|+|......
T Consensus 151 --~~~~~~~~a~~---~v~~D~~~~--~~~~---~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~------------- 207 (306)
T 3bf5_A 151 --NYLDMAKSIRS---KIIFDPSQE--IHKY---SKDELKKFHEISYMSIFNDHEYRVFREMTGLSS------------- 207 (306)
T ss_dssp --SHHHHHHHCCS---EEEECCGGG--GGGS---CHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCSS-------------
T ss_pred --HHHHHHHHhCC---cEEEcCchh--hhhc---cHHHHHHHHhcCCEEEcCHHHHHHHhCCCCcCc-------------
Confidence 34667777764 999999832 3321 145567788999999999999999987532110
Q ss_pred CcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhH
Q 008161 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 440 ~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
. .+ .||||+|++|++++.++...++++ +++ . +|||||||+|+|||+++|++| +++
T Consensus 208 ---~---~l------~vvvT~G~~Ga~~~~~~~~~~~~~---~~v--~-vDttGAGDaF~ag~~~~l~~g-------~~~ 262 (306)
T 3bf5_A 208 ---P---KV------TTIVTNGERGSSLFMDGKKYDFPA---IPS--S-GDTVGAGDSFRAGLYLALYNR-------RSI 262 (306)
T ss_dssp ---C---SS------CEEEEEGGGEEEEEETTEEEEEEC---CCC--C-SCCTTHHHHHHHHHHHHHHTT-------CCH
T ss_pred ---c---cE------EEEEeecccCeEEEeCCcEEEecC---CcC--C-CCCCCccHHHHHHHHHHHHcC-------CCH
Confidence 0 11 199999999999998765445544 333 4 899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHccc--cccCCCCCCHHHHHhhhCC
Q 008161 520 VRTIKYAIDCGVRDQWS--QARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~--~G~~~~~pt~eeve~~l~~ 555 (575)
++|+++|+++|+++|++ .|+..++|+++++++++++
T Consensus 263 ~~a~~~A~~~aa~~v~~~~~G~~~~~p~~~ev~~~~~~ 300 (306)
T 3bf5_A 263 EKGMIYGTIIAHHVIDDGIENFSLNMEDLERETENYRR 300 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCHHHHHHHHHh
Confidence 99999999999999999 9998888999999999854
No 48
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=100.00 E-value=2.3e-37 Score=318.73 Aligned_cols=291 Identities=14% Similarity=0.162 Sum_probs=230.0
Q ss_pred CcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008161 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~ 284 (575)
|-+.+.|++++|++.... ++.. ++ ......+...+||+++|+|++|++||.++.++|.||+ .+|++++
T Consensus 1 mi~tv~~n~~~D~~~~~~---~~~~-------g~-~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~ 68 (306)
T 2abq_A 1 MIYTVTLNPSIDYIVQVE---NFQQ-------GV-VNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG-FTGAYVR 68 (306)
T ss_dssp CEEEEESSCEEEEEEECT---TCCS-------SS-EEECSEEEEEEECHHHHHHHHHHHTTCCCEEEEEEEH-HHHHHHH
T ss_pred CEEEEecCchheEEEEcC---Cccc-------CC-eEEeceeEecCCchHHHHHHHHHHcCCCceEEEEecc-hhHHHHH
Confidence 346788999999998763 3321 11 2234578899999999999999999999999999998 8999999
Q ss_pred HHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch--hh---hccCcEEEEecccccccch
Q 008161 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DV---LKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 285 ~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~--~~---l~~ad~v~~sg~~l~~~~~ 359 (575)
+.|++.||++.++.+.+ .|++++++ .+|++.+ +...++ .+++++++. .. ++.++++|++|+... ...
T Consensus 69 ~~L~~~gv~~~~v~~~~--~t~~~~~~--~~g~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-~~~ 140 (306)
T 2abq_A 69 NALEKEEIGLSFIEVEG--DTRINVKI--KGKQETE-LNGTAP--LIKKEHVQALLEQLTELEKGDVLVLAGSVPQ-AMP 140 (306)
T ss_dssp HHHHHTTCEECCEEESS--CCEEEEEE--ESSSCEE-EBCCCC--CCCHHHHHHHHHHHTTCCTTCEEEEESCCCT-TSC
T ss_pred HHHHHcCCceEEEEcCC--CCceEEEE--eCCceEE-EECCCC--CCCHHHHHHHHHHHHhccCCCEEEEecCCCC-CCC
Confidence 99999999999998754 37777665 4687754 444443 466665532 11 578999999886432 234
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc-cCeEEeCCHHHHHHhhCCCCCcccccccccccccc
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
.+.+.++++.++++|++|+|||+. ..+.++++ ++|++++|.+|+..|+|....+..+
T Consensus 141 ~~~~~~~~~~a~~~g~~v~~D~~~------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~---------- 198 (306)
T 2abq_A 141 QTIYRSMTQIAKERGAFVAVDTSG------------EALHEVLAAKPSFIKPNHHELSELVSKPIASIED---------- 198 (306)
T ss_dssp TTHHHHHHHHHHTTTCEEEEECCH------------HHHHHHGGGCCSEECCBHHHHHHHHTSCCCSHHH----------
T ss_pred HHHHHHHHHHHHhcCCEEEEECCh------------HHHHHHHhcCCcEEecCHHHHHHHhCCCCCCHHH----------
Confidence 567888999999999999999851 23567888 9999999999999999875432111
Q ss_pred CCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchh
Q 008161 439 HYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 439 ~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.+++.|++.||||+|++|++++.+++..++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 199 --~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~a~~~~~l~~g-------~~ 264 (306)
T 2abq_A 199 --AIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNV---PSGE--VRNSVGAGDSVVAGFLAALQEG-------KS 264 (306)
T ss_dssp --HHHHHHHHHHTTCCEEEEECGGGCEEEEETTEEEEECC---CCCC--CCCCSSHHHHHHHHHHHHHHTT-------CC
T ss_pred --HHHHHHHHHHcCCCEEEEecCCCceEEEeCCCEEEEeC---CCcc--ccCCccHHHHHHHHHHHHHHcC-------CC
Confidence 12566778888999999999999999998765444443 4454 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++|+++|+++|+++|++. ++|+++++++++++
T Consensus 265 ~~~a~~~A~a~aa~~v~~~----~~p~~~ev~~~~~~ 297 (306)
T 2abq_A 265 LEDAVPFAVAAGSATAFSD----GFCTREEVERLQQQ 297 (306)
T ss_dssp HHHHHHHHHHHHHHHHHSS----SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc----CCCCHHHHHHHHhh
Confidence 9999999999999999998 57999999999854
No 49
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=100.00 E-value=4.5e-37 Score=316.06 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=228.2
Q ss_pred CcEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008161 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~ 284 (575)
|-+.|.|++++|+++... ++.. ++ ......+...+||+++|+|++|++||.++.++|.||+ .+|++++
T Consensus 1 mi~tvt~n~~~D~~~~~~---~~~~-------g~-~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~ 68 (306)
T 2jg5_A 1 MIYTVTFNPSIDYVIFTN---DFKI-------DG-LNRATATYKFAGGKGINVSRVLKTLDVESTALGFAGG-FPGKFII 68 (306)
T ss_dssp CEEEEESSCEEEEEEECS---SCCT-------TS-EEECSEEEEEEESHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHH
T ss_pred CEEEEecCceEEEEEEcC---Cccc-------Cc-eEEeceeEecCCchHHHHHHHHHHcCCCeeEEEEecC-cchHHHH
Confidence 457889999999998763 3221 11 2234678899999999999999999999999999999 6999999
Q ss_pred HHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch--hh---hccCcEEEEecccccccch
Q 008161 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DV---LKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 285 ~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~--~~---l~~ad~v~~sg~~l~~~~~ 359 (575)
+.|++.||+++++.+.+ .|++++++ .+|++.+ +...++ .+++++++. .. ++.++++|++|+... ...
T Consensus 69 ~~l~~~gv~~~~v~~~~--~t~~~~~~--~~g~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-~~~ 140 (306)
T 2jg5_A 69 DTLNNSAIQSNFIEVDE--DTRINVKL--KTGQETE-INAPGP--HITSTQFEQLLQQIKNTTSEDIVIVAGSVPS-SIP 140 (306)
T ss_dssp HHHHHTTCEECCEECSS--CCEEEEEE--ESSSEEE-EECCCC--CCCHHHHHHHHHHHTTCCTTCEEEEESCCCT-TSC
T ss_pred HHHHHCCCceeEEEcCC--CCeEEEEE--cCCCEEE-EECCCC--CCCHHHHHHHHHHHHhccCCCEEEEeCCCCC-CCC
Confidence 99999999999987653 37777655 4677644 455554 366655531 11 567999999975322 123
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc-cCeEEeCCHHHHHHhhCCCCCcccccccccccccc
Q 008161 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 360 ~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
.+.+..+++.++++|++|+||++. ..+.++++ ++|+|++|.+|++.|+|....+..+
T Consensus 141 ~~~~~~~~~~a~~~g~~v~~D~~~------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~---------- 198 (306)
T 2jg5_A 141 SDAYAQIAQITAQTGAKLVVDAEK------------ELAESVLPYHPLFIKPNKDELEVMFNTTVNSDAD---------- 198 (306)
T ss_dssp TTHHHHHHHHHHHHCCEEEEECCH------------HHHHHHGGGCCSEECCBHHHHHHHTTSCCCSHHH----------
T ss_pred hHHHHHHHHHHHHCCCEEEEECCh------------HHHHHHHhcCCeEEecCHHHHHHHhCCCCCCHHH----------
Confidence 467788899999999999999851 12455677 6999999999999999875432111
Q ss_pred CCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchh
Q 008161 439 HYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 439 ~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.+++.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 199 --~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~~ 264 (306)
T 2jg5_A 199 --VIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVN---PQGK--VVNTVGSGDSTVAGMVAGIASG-------LS 264 (306)
T ss_dssp --HHHHHHHHHHTTCSCEEEECGGGCEEEECSSEEEEEEC---CCCC--CCCCTTHHHHHHHHHHHHHHTT-------CC
T ss_pred --HHHHHHHHHHcCCCEEEEccCCCceEEEeCCcEEEEeC---Cccc--ccCCcChHHHHHHHHHHHHHcC-------CC
Confidence 12566778788999999999999999987665445554 3454 7999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCC
Q 008161 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEP 555 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~ 555 (575)
+++|+++|+++|+++|++.| +|+++++++++++
T Consensus 265 ~~~a~~~A~a~aa~~v~~~G----~~~~~ev~~~~~~ 297 (306)
T 2jg5_A 265 IEKAFQQAVACGTATAFDED----LATRDAIEKIKSQ 297 (306)
T ss_dssp HHHHHHHHHHHHHHHHTSSS----SCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCC----CCCHHHHHHHHhc
Confidence 99999999999999999999 6999999999854
No 50
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=8.4e-35 Score=298.95 Aligned_cols=276 Identities=14% Similarity=0.090 Sum_probs=207.9
Q ss_pred cEEEEccceeeeeccCCCCCCcchhhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008161 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~iD~i~~~~~~~~lp~~e~~~~l~~~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lvg~VG~D~~G~~i~~ 285 (575)
.|.++|.+..|.+... ..+...+||+++|+|++|++||.++.++|.||+|. +.+++
T Consensus 13 ~~~~~~~~~~~~~~~~----------------------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~--~~~~~ 68 (298)
T 1vk4_A 13 MITFIGHVSKDVNVVD----------------------GKREIAYGGGVVMGAITSSLLGVKTKVITKCTRED--VSKFS 68 (298)
T ss_dssp EEEEECCCEEEEEEET----------------------TEEEEEEECHHHHHHHHHHHTTCEEEEEEEECTTT--GGGGT
T ss_pred eEEEeccccCceEeec----------------------CeEEEecCCHHHHHHHHHHHcCCceEEEEEEcCCH--HHHHH
Confidence 3777788887777543 56778999999999999999999999999999997 77889
Q ss_pred HHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008161 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++.++.. ..+|++++++ +.+|++++. ...++...++++++.. ..++++|++++...+ ...+
T Consensus 69 ~L~~~gVd~~~v~~--~~~t~~~~i~-~~~g~~~~~-~~~~~~~~l~~~~~~~---~~~~~v~~~~~~~~~-----~~~~ 136 (298)
T 1vk4_A 69 FLRDNGVEVVFLKS--PRTTSIENRY-GSDPDTRES-FLISAADPFTESDLAF---IEGEAVHINPLWYGE-----FPED 136 (298)
T ss_dssp TTGGGTCEEEEEEC--SSCEEEEEEC------CCEE-EEEECCCCCCGGGGGG---CCSSEEEECCSSTTS-----SCGG
T ss_pred HHHHcCCceEEEec--CCCcEEEEEE-cCCCCeeEE-EeccccccCCHHHcCc---CCCCEEEECCccccc-----ccHH
Confidence 99999999998754 3466666555 456777665 3345556677766533 579999998863321 1235
Q ss_pred HHHHHhhcCCEEEEcCCC-CCccccCh--hHHHHHHHHhcccCeEEeCCHHHHHHhhCCCCCccccccccccccccCCcH
Q 008161 366 AIKISKQFGGIIFYDVNL-PLPLWQSG--EETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~-~~~l~~~~--~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+++.++++|++|+||++. ...+|... ....+.+.++++++|+|++|++|++.|+|... ..
T Consensus 137 ~~~~~~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~-----------------~~ 199 (298)
T 1vk4_A 137 LIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTND-----------------LR 199 (298)
T ss_dssp GHHHHHHHCSEEEEETHHHHEEEETTEEEECCCTTHHHHGGGCSEEEEEHHHHHHHHSCSC-----------------HH
T ss_pred HHHHHHHcCCEEEEecCccccccccccccccchHHHHhhcccCCEEecCHHHHHHHhCCCC-----------------HH
Confidence 667778889999999862 11111000 00011356788999999999999999998641 13
Q ss_pred HHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHc-CCCCCCCchhHHH
Q 008161 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV-QPHLITDKGYLVR 521 (575)
Q Consensus 443 e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~-g~~~~~d~~sl~e 521 (575)
+.++.|.+.|++.||||+ ++|++++.+ ...++++ ++++ ++|||||||+|+|||+++|++ | +++++
T Consensus 200 ~~~~~l~~~g~~~vvvT~-~~G~~~~~~-~~~~~~~---~~v~--vvDttGAGDaF~a~~~~~l~~~g-------~~~~~ 265 (298)
T 1vk4_A 200 ESCRIIRSFGAKIILATH-ASGVIVFDG-NFYEASF---RSWS--LEGRTGRGDTCTAAFLVGFVFKK-------MSIEK 265 (298)
T ss_dssp HHHHHHHHTTCSSEEEEE-TTEEEEESS-SEEEEEC---CCSS--GGGGTTHHHHHHHHHHHHHHTSC-------CCHHH
T ss_pred HHHHHHHhcCCCEEEEEc-CCCcEEEeC-CEEEecc---CCcc--cCCCcCccHHHHHHHHHHHHHcC-------CCHHH
Confidence 567778888999999999 999999876 4445553 3454 899999999999999999999 9 99999
Q ss_pred HHHHHHHHHHHHccccccCCCCCCHHHH
Q 008161 522 TIKYAIDCGVRDQWSQARTLGYPPKGGM 549 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~~~pt~eev 549 (575)
|+++|+++|+++|++.|+... |+.+++
T Consensus 266 a~~~A~a~aa~~v~~~G~~~~-~~~~el 292 (298)
T 1vk4_A 266 ATKFAAAVTSVKMRHPGPLRR-EDLEAI 292 (298)
T ss_dssp HHHHHHHHHHHHTTSSSSCCG-GGGGGC
T ss_pred HHHHHHHHHHHHHccCCCCCC-CCHHHH
Confidence 999999999999999999754 666654
No 51
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=99.88 E-value=7.7e-23 Score=211.14 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=155.3
Q ss_pred CeEEEEEeCCChHHHHHHHHHHhCCCccceEEEc--CCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccc--hhh--
Q 008161 267 KVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRID--AKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDV-- 340 (575)
Q Consensus 267 ~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~--~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~--~~~-- 340 (575)
.+.++|.||+|. |+++ |++.||++.++.+. .+ .|++.+ ..+ ..++++++. .+.
T Consensus 12 ~~~~~g~vG~D~-g~~i---L~~~GV~~~~v~~~~~~~-~t~~~~--------------~~g--~~l~~~~i~~~~~~~~ 70 (312)
T 2yxt_A 12 SHVIRGYVGNRA-ATFP---LQVLGFEIDAVNSVQFSN-HTGYAH--------------WKG--QVLNSDELQELYEGLR 70 (312)
T ss_dssp EEESSSCSTHHH-HHHH---HHHTTCEEEEEEEEEESS-CTTSSC--------------CCE--EECCHHHHHHHHHHHH
T ss_pred cccCCCccchHh-hHHH---HHHcCCeEEEEEEEEecC-CCCcCC--------------ccC--ccCCHHHHHHHHHHHH
Confidence 467889999998 9988 89999999987653 21 333221 011 234555543 111
Q ss_pred ---hccCcEEEEecccccccchHHHHHHHHHHHhhcCC--EEEEcCCCCCc------cccChhHHHHHHHH-hcccCeEE
Q 008161 341 ---LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG--IIFYDVNLPLP------LWQSGEETKMFIQQ-AWTLADVI 408 (575)
Q Consensus 341 ---l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~--~Vv~D~~~~~~------l~~~~~~~~~~l~~-ll~~aDII 408 (575)
+..++++|++..+ ++...+.+.++++.++++|. +++|||+.+.. +|. .+...+.+.. +++++|+|
T Consensus 71 ~~~~~~~~~v~~G~~~--~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~~~~~~sg~~~~-~~~~~~~l~~~ll~~~dil 147 (312)
T 2yxt_A 71 LNNMNKYDYVLTGYTR--DKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYV-PEDLLPVYKEKVVPLADII 147 (312)
T ss_dssp HTTCCCCSEEEECCCC--CHHHHHHHHHHHHHHHHHCTTCEEEECCCCEEC--CCCEESS-CTTHHHHHHHTTGGGCSEE
T ss_pred hcCCccCCEEEECCCC--CHHHHHHHHHHHHHHHhhCCCCeEEECCCcCCCCCCCCCeeC-CHHHHHHHHHHhhhhCCEE
Confidence 5678998865332 22346677788999988875 48999986533 453 2234555654 89999999
Q ss_pred eCCHHHHHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCc------ceEEE-------ecC----
Q 008161 409 EVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS------KVHYY-------TKE---- 471 (575)
Q Consensus 409 ~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~------Ga~v~-------~~~---- 471 (575)
+||..|++.|+|....+..+ ..+.++.|++.|++.||||+|.. |++++ +++
T Consensus 148 ~pN~~Ea~~L~g~~~~~~~~------------~~~~~~~l~~~g~~~VvvT~G~~g~~~~~G~~~~~~~~~~~~~~~~~~ 215 (312)
T 2yxt_A 148 TPNQFEAELLSGRKIHSQEE------------ALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVV 215 (312)
T ss_dssp CCCHHHHHHHHSCCCCSHHH------------HHHHHHHHHHHSCSEEEECCCSCCCTTCTTEEEEEEEEEC----CCCC
T ss_pred cCCHHHHHHHhCCCCCCHHH------------HHHHHHHHHHcCCCEEEEecccCCCCCCCceEEEEEeccccccccccc
Confidence 99999999999875432111 13567778888999999998876 47765 332
Q ss_pred -CCeeEecccCCCCCCcccCccCchHHHHHHHHHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 472 -DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV-QPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 472 -~~~~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~-g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
...++++ ++++ + |||||||+|+|||+++|++ | .++.+|+++|+++|+.++++
T Consensus 216 ~~~~~~~~---~~v~--v-dttGAGDaf~a~~~~~l~~~g-------~~l~~a~~~A~a~a~~~v~~ 269 (312)
T 2yxt_A 216 MERIRMDI---RKVD--A-VFVGTGDLFAAMLLAWTHKHP-------NNLKVACEKTVSTLHHVLQR 269 (312)
T ss_dssp EEEEEEEE---ECCS--S-CCSSHHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEee---cccC--C-CCCCchHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 2234443 3454 5 9999999999999999998 8 99999999999999888763
No 52
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=99.88 E-value=3.1e-22 Score=203.69 Aligned_cols=230 Identities=13% Similarity=0.082 Sum_probs=160.5
Q ss_pred cCCCeEE-EEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEecCCccccCCccccch----
Q 008161 264 LGGKVAF-MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI---- 338 (575)
Q Consensus 264 LG~~v~l-vg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~e~i~~---- 338 (575)
||..... +|.+|.| ..+..|+..||++.++.. .+ ..+..|.+.+. + ..++++++..
T Consensus 19 L~i~~~~~~g~~G~d----~~~~~l~~~Gv~~~~v~t--------~i-~~~~~g~~~~~----g--~~~~~~~~~~~~~~ 79 (283)
T 2ddm_A 19 VAVQSQVVYGSVGNS----IAVPAIKQNGLNVFAVPT--------VL-LSNTPHYDTFY----G--GAIPDEWFSGYLRA 79 (283)
T ss_dssp EEEEEEESSSSSTHH----HHHHHHHHTTCCEEEEEE--------EE-ESSCTTSSCCC----E--EECCHHHHHHHHHH
T ss_pred EEEecccCCCcchHH----HHHHHHHHcCCeeeEEeE--------EE-eccCCCcCcee----e--eeCCHHHHHHHHHH
Confidence 4555444 7777776 245688889999988743 12 22444544311 1 2344444321
Q ss_pred --h--hhccCcEEEEecccccccchHHHHHHHHHHHhh--cCCEEEEcCCCCC---ccccChhHHHHHHHHhcccCeEEe
Q 008161 339 --D--VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQ--FGGIIFYDVNLPL---PLWQSGEETKMFIQQAWTLADVIE 409 (575)
Q Consensus 339 --~--~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~--~G~~Vv~D~~~~~---~l~~~~~~~~~~l~~ll~~aDII~ 409 (575)
. .++.+++|+++++.. ....+.+.++++.+++ .|++|+|||+.+. .+|...+........+++++|+|+
T Consensus 80 l~~~~~~~~~~~v~~G~l~~--~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~~~dil~ 157 (283)
T 2ddm_A 80 LQERDALRQLRAVTTGYMGT--ASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGIT 157 (283)
T ss_dssp HHHTTCCTTCCEEEECCCSC--HHHHHHHHHHHHHHHTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGGGCSEEC
T ss_pred HHhcCCcccCCEEEECCcCC--HHHHHHHHHHHHHHHhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhhhceEec
Confidence 1 355789999875432 2356778888898887 7999999998664 456432223334456899999999
Q ss_pred CCHHHHHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCc-------ceEEEecCCCeeEecccCC
Q 008161 410 VTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS-------KVHYYTKEDDGAVLGTEDA 482 (575)
Q Consensus 410 ~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~-------Ga~v~~~~~~~~v~a~~~~ 482 (575)
||..|++.|+|....+..+ ..+.++++.+.|++.||||+|.. |++++++++..+++. +
T Consensus 158 pN~~E~~~L~g~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~G~~~~~~~~~~~~~~---~ 222 (283)
T 2ddm_A 158 PNIFELEILTGKNCRDLDS------------AIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVVTADSVNVISH---S 222 (283)
T ss_dssp CBHHHHHHHHTSCCSSHHH------------HHHHHHHHCCSSCCEEEEEC-------CEEEEEEEETTEEEEEEE---E
T ss_pred CCHHHHHHHhCCCCCCHHH------------HHHHHHHHHHcCCCEEEEccccCccCCCceeEEEEeCCceEEEee---c
Confidence 9999999999975432111 13567778788999999999999 888887764444544 2
Q ss_pred CCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcccccc
Q 008161 483 PLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 483 ~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~ 539 (575)
++ .+||+||||+|+|+|+++|++| +++.+|+++|+++++.++++...
T Consensus 223 ~v---~vdt~GAGDaf~a~~~~~l~~g-------~~~~~A~~~A~a~a~~~v~~~~~ 269 (283)
T 2ddm_A 223 RV---KTDLKGTGDLFCAQLISGLLKG-------KALTDAVHRAGLRVLEVMRYTQQ 269 (283)
T ss_dssp CC---CCCCCCHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ee---CCCCCChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHHHh
Confidence 33 3799999999999999999999 99999999999999999987654
No 53
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=99.82 E-value=5.7e-20 Score=187.77 Aligned_cols=164 Identities=10% Similarity=0.030 Sum_probs=121.0
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCE-EEEcCCCCC----ccccChhHHHHHHH-HhcccCeEEeCCHHHHHH
Q 008161 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGI-IFYDVNLPL----PLWQSGEETKMFIQ-QAWTLADVIEVTKQELEF 417 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~-Vv~D~~~~~----~l~~~~~~~~~~l~-~ll~~aDII~~N~~Ea~~ 417 (575)
+++++++.. . ..+.+..+++.+++.+.+ |+|||+.+. .+|. ....+.+. .+++++|+|+||..|++.
T Consensus 95 ~~~v~~G~l---~--~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~g~~l~~--~~~~~~l~~~ll~~~dil~pN~~Ea~~ 167 (288)
T 1jxh_A 95 IDTTKIGML---A--ETDIVEAVAERLQRHHVRNVVLDTVMLAKSGDPLLS--PSAIETLRVRLLPQVSLITPNLPEAAA 167 (288)
T ss_dssp CSEEEECCC---C--SHHHHHHHHHHHHHTTCCSEEEECCCC------CCC--HHHHHHHHHHTGGGCSEEECBHHHHHH
T ss_pred CCEEEECCC---C--CHHHHHHHHHHHHHCCCCeEEEcCcccCCCCCccCC--HHHHHHHHHHHHhhCcEEcCCHHHHHH
Confidence 688877632 1 457788888999999986 999998653 3453 22233444 488999999999999999
Q ss_pred hhCC-CCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcc-----eEEEecCCCeeEecccCCCCCCcccCc
Q 008161 418 LCGI-KPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-----VHYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 418 L~g~-~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G-----a~v~~~~~~~~v~a~~~~~v~~~vVDT 491 (575)
|+|. ...+..+ ..+.+++|.+.|++.||||+|.+| ++++++++...++. ++++ ++||
T Consensus 168 L~g~~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~~~---~~~~--~vdt 230 (288)
T 1jxh_A 168 LLDAPHARTEQE------------MLAQGRALLAMGCEAVLMKGGHLEDAQSPDWLFTREGEQRFSA---PRVN--TKNT 230 (288)
T ss_dssp HHTCCCCCSHHH------------HHHHHHHHHHTTCSEEEEBC---------CEEECSSCEEEC------CCC--CSCC
T ss_pred HcCCCCCCCHHH------------HHHHHHHHHHhCCCEEEEeccCCCCCceeEEEEECCeEEEEec---cccC--CCCC
Confidence 9987 4332111 135677888889999999999999 88887664333333 3444 7999
Q ss_pred cCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccc
Q 008161 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQA 538 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G 538 (575)
+||||+|+|+|+++|++| .++.+|+++|+++++.+++..+
T Consensus 231 tGAGD~f~a~~~a~l~~g-------~~~~~A~~~A~a~a~~~v~~~~ 270 (288)
T 1jxh_A 231 HGTGCTLSAALAALRPRH-------RSWGETVNEAKAWLSAALAQAD 270 (288)
T ss_dssp BTHHHHHHHHHHHHGGGS-------SSHHHHHHHHHHHHHHHHTTGG
T ss_pred CCchHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999 9999999999999999987663
No 54
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=99.80 E-value=2.9e-19 Score=179.01 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=120.9
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcC-CEEEEcCCCCCc----cccChhHHHHHH-HHhcccCeEEeCCHHHHH
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFG-GIIFYDVNLPLP----LWQSGEETKMFI-QQAWTLADVIEVTKQELE 416 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G-~~Vv~D~~~~~~----l~~~~~~~~~~l-~~ll~~aDII~~N~~Ea~ 416 (575)
..++++++.. . ..+.+..+++.+++++ ++|+|||+.+.. +|. ....+.+ ..+++++|+|+||..|++
T Consensus 70 ~~~~v~~G~l---~--~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~g~~l~~--~~~~~~~~~~ll~~~dil~pN~~E~~ 142 (258)
T 1ub0_A 70 PLHAAKTGAL---G--DAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDPLLA--KEAAAALKERLFPLADLVTPNRLEAE 142 (258)
T ss_dssp CCSEEEECCC---C--SHHHHHHHHHHHHHTTCCSEEECCCC---------C--HHHHHHHHHHTGGGCSEECCBHHHHH
T ss_pred CCCEEEECCc---C--CHHHHHHHHHHHHhCCCCcEEECCeeecCCCCcccC--hHHHHHHHHhhcccCeEEeCCHHHHH
Confidence 3677777532 2 3456777888888888 899999986543 553 1222334 568899999999999999
Q ss_pred HhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCc-c----eEEEecCCCeeEecccCCCCCCcccCc
Q 008161 417 FLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS-K----VHYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 417 ~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~-G----a~v~~~~~~~~v~a~~~~~v~~~vVDT 491 (575)
.|+|....+..+ ..+.+++|.+.|++.||||+|.. | ++++++++..+++. ++++ ++||
T Consensus 143 ~L~g~~~~~~~~------------~~~~a~~l~~~g~~~vvvt~g~~~G~~~~~~~~~~~~~~~~~~---~~~~--~~dt 205 (258)
T 1ub0_A 143 ALLGRPIRTLKE------------AEEAAKALLALGPKAVLLKGGHLEGEEAVDLLATRGGVLRFSA---PRVH--TRNT 205 (258)
T ss_dssp HHHCSCCCSHHH------------HHHHHHHHHTTSCSCEEEEEEECC---EEEEEEETTEEEEEEE---CCCC--CSCC
T ss_pred HHhCCCCCCHHH------------HHHHHHHHHHcCCCEEEEccCCCCCCceEEEEEeCCeEEEEec---cccC--CCCC
Confidence 999975432111 13567778788999999999998 8 77777654444443 3444 7999
Q ss_pred cCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcccc
Q 008161 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQ 537 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~ 537 (575)
+||||+|+|+|+++|++| +++.+|+++|+++++.++++.
T Consensus 206 ~GaGD~f~a~~~~~l~~g-------~~~~~a~~~a~~~~~~~~~~~ 244 (258)
T 1ub0_A 206 HGTGCTLSAAIAALLAKG-------RPLAEAVAEAKAYLTRALKTA 244 (258)
T ss_dssp TTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999888653
No 55
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=99.77 E-value=8.1e-18 Score=169.79 Aligned_cols=166 Identities=15% Similarity=0.012 Sum_probs=126.4
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCC-EEEEcCCCCCccccC--hhHHHHHHH-HhcccCeEEeCCHHHHHHh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG-IIFYDVNLPLPLWQS--GEETKMFIQ-QAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~-~Vv~D~~~~~~l~~~--~~~~~~~l~-~ll~~aDII~~N~~Ea~~L 418 (575)
.+++++++.+ . ..+.+..+++.+++++. +++|||+.+...|.. .+...+.+. .+++++|||+||..|++.|
T Consensus 74 ~~d~v~~G~l---~--~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~~~diltpN~~E~~~L 148 (271)
T 2i5b_A 74 GVDAMKTGML---P--TVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQL 148 (271)
T ss_dssp CCSEEEECCC---C--SHHHHHHHHHHHHHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGGGCSEECCBHHHHHHH
T ss_pred CCCEEEECCC---C--CHHHHHHHHHHHHhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHhhCcEEcCCHHHHHHH
Confidence 5788888642 2 24677788888888888 599999877654421 122334454 7889999999999999999
Q ss_pred hCCC-CCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCC--cce----EEEecCCCeeEecccCCCCCCcccCc
Q 008161 419 CGIK-PTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT--SKV----HYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 419 ~g~~-~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~--~Ga----~v~~~~~~~~v~a~~~~~v~~~vVDT 491 (575)
+|.. ..+..+ ..+.++.+.+.|++.||||.|. +|+ ++++++...+++. ++++ ++||
T Consensus 149 ~g~~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~g~~~~g~~~~~~~~~~~~~~~~~~---~~~~--~~dt 211 (271)
T 2i5b_A 149 SGMDELKTVDD------------MIEAAKKIHALGAQYVVITGGGKLKHEKAVDVLYDGETAEVLES---EMID--TPYT 211 (271)
T ss_dssp HTCCCCCSHHH------------HHHHHHHHHTTTCSEEEEECGGGSCSSSEEEEEECSSCEEEEEE---CCCC--CSCC
T ss_pred hCCCCCCCHHH------------HHHHHHHHHHhCCCEEEEcCCCCCCCCceEEEEEeCCeEEEEec---cccC--CCCC
Confidence 9975 332111 1356777888899999999999 784 6666554444444 3444 7899
Q ss_pred cCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcccc
Q 008161 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQ 537 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~ 537 (575)
+||||+|+|+|+++|++| .++.+|+++|+++++.+++..
T Consensus 212 ~GaGD~f~a~~~~~l~~g-------~~~~~A~~~A~~~~~~~~~~~ 250 (271)
T 2i5b_A 212 HGAGCTFSAAVTAELAKG-------AEVKEAIYAAKEFITAAIKES 250 (271)
T ss_dssp BTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999998765
No 56
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=99.71 E-value=1.2e-16 Score=163.33 Aligned_cols=170 Identities=17% Similarity=0.072 Sum_probs=126.3
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcC--CEEEEcCCCCC----ccccChhHHHHHHH-HhcccCeEEeCCHH
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG--GIIFYDVNLPL----PLWQSGEETKMFIQ-QAWTLADVIEVTKQ 413 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G--~~Vv~D~~~~~----~l~~~~~~~~~~l~-~ll~~aDII~~N~~ 413 (575)
+..+|+|++ |+ +.+....+.+.++++.+++.| +++++||++.. .+|. +...+.+. .+++++|+|+||..
T Consensus 75 l~~~d~v~~-G~-l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~~~~~~~~--~~~~~~l~~~ll~~~diitpN~~ 150 (289)
T 3pzs_A 75 LKDCDAVLS-GY-IGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVA--PGVAEFFCNEALPASDMIAPNLL 150 (289)
T ss_dssp GGGCCEEEE-CC-CSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEETTTEECSC--HHHHHHHHHTHHHHCSEECCCHH
T ss_pred ccCCCEEEE-CC-CCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccCCCCcccC--HHHHHHHHHHhhccCCEEeCCHH
Confidence 357888755 43 224456788889999888766 89999986432 2443 34445555 48899999999999
Q ss_pred HHHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecC-Ccce-------EEEecCCCeeEecccCCCCC
Q 008161 414 ELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNG-TSKV-------HYYTKEDDGAVLGTEDAPLT 485 (575)
Q Consensus 414 Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G-~~Ga-------~v~~~~~~~~v~a~~~~~v~ 485 (575)
|++.|+|....+..+ ..+.+++|.+.|++.||||.| ..|+ +++++++..+++. +.++
T Consensus 151 E~~~L~g~~~~~~~~------------~~~aa~~l~~~g~~~Vvvt~~~~~G~~~~~~~~~~~~~~~~~~~~~---~~~~ 215 (289)
T 3pzs_A 151 ELEQLSGERVENVEQ------------AVQVARSLCARGPKVVLVKHLSRAGYHADCFEMLLVTADDAWHICR---PLVD 215 (289)
T ss_dssp HHHHHHTSCCCSHHH------------HHHHHHHHHTTSCSEEEECCCGGGSSCTTEEEEEEECSSCEEEEEE---ECCC
T ss_pred HHHHHhCCCCCCHHH------------HHHHHHHHHHHCCCEEEEecccCCCCCCCeEEEEEEeCCeEEEEEe---eeec
Confidence 999999986543211 236778888889999999985 5786 6666665444443 2343
Q ss_pred CcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 486 PFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 486 ~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
..++|++||||+|+|+|+++|++| .++.+|+++|+++++.++..
T Consensus 216 ~~v~dt~GaGD~f~a~~~~~l~~g-------~~~~~A~~~A~~~~~~~i~~ 259 (289)
T 3pzs_A 216 FGKRQPVGVGDLTSGLLLVNLLKG-------EPLDKALEHVTAAVYEVMLK 259 (289)
T ss_dssp CTTSCCTTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 113899999999999999999999 99999999999988777664
No 57
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=99.71 E-value=1.1e-16 Score=163.13 Aligned_cols=165 Identities=15% Similarity=0.017 Sum_probs=123.3
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC--cccc-ChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL--PLWQ-SGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~--~l~~-~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
..|.|.++.+ .++...+.+.++++.. .+.+|+|||+++. .+|. ..++..+.+.++++++|+|+||..|++.|+
T Consensus 74 ~~daik~G~l--~s~~~i~~v~~~l~~~--~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~~adiitpN~~Ea~~L~ 149 (282)
T 3h74_A 74 HFDQALIGYV--GSVALCQQITTYLEQQ--TLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLT 149 (282)
T ss_dssp CCSEEEECCC--CSHHHHHHHHHHHHHS--CCSEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCCHHHHHHHH
T ss_pred ccCEEEECCC--CCHHHHHHHHHHHHHC--CCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhccCCEECCCHHHHHHHh
Confidence 5788888632 1323344444444433 4689999998874 4564 235566667789999999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHh-cCC-cEEEEecCC----cceEEEe-cCCCeeEecccCCCCCCcccCcc
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWH-ENL-KVLFVTNGT----SKVHYYT-KEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~-~g~-k~VVVT~G~----~Ga~v~~-~~~~~~v~a~~~~~v~~~vVDTt 492 (575)
|....+..+ ..+.+++|.+ .|+ +.||||.|. .|+++++ ++...+++. +++ .+|++
T Consensus 150 g~~~~~~~~------------~~~aa~~L~~~~g~~~~Vvvt~G~~~~~~g~~~~~~~~~~~~~~~---~~v---~~dt~ 211 (282)
T 3h74_A 150 GAPYQVTPD------------LEVILPALQAQLKTGAHAVITDVQRADQIGCAWLDEAGHVQYCGA---RRL---PGHYN 211 (282)
T ss_dssp TCCCCSSCC------------HHHHHHHHHTTSCTTCEECEEEEEETTEEEEEEECTTSCEEEEEE---ECC---SSCCT
T ss_pred CCCCCCHHH------------HHHHHHHHHHHhCCCCEEEEEecCCCCceEEEEEeCCCeEEEEEe---cCC---CCCCc
Confidence 986433211 2467888888 899 999999994 7888885 443334443 233 38999
Q ss_pred CchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
||||+|.|+|+++|++| .++++|+++|+++++.++..
T Consensus 212 GaGD~fsaai~a~l~~g-------~~l~~A~~~A~~~~~~ai~~ 248 (282)
T 3h74_A 212 GTGDTLAAVIAGLLGRG-------YPLAPTLARANQWLNMAVAE 248 (282)
T ss_dssp THHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999888764
No 58
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=99.70 E-value=2.2e-16 Score=161.69 Aligned_cols=170 Identities=18% Similarity=0.101 Sum_probs=127.5
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc--ccc-ChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP--LWQ-SGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~--l~~-~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
..|.|.++-+ .+....+.+.++++.+++.+++|+|||+.+.. +|. ..++..+.+.++++++|+|+||..|++.|+
T Consensus 77 ~~~aik~G~l--~s~~~i~~v~~~l~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~ 154 (291)
T 3mbh_A 77 QFDAIYTGYL--GSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLL 154 (291)
T ss_dssp CCSEEEECCC--SSTTHHHHHHHHHHHHCCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCBHHHHHHHH
T ss_pred ccCEEEECCC--CCHHHHHHHHHHHHHhcCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhccCCEEeCCHHHHHHHh
Confidence 5788887532 24456788888888887678999999987653 564 235556667789999999999999999999
Q ss_pred CCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecC-------CcceEEEecCC-C-eeEecccCCCCCCcccC
Q 008161 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNG-------TSKVHYYTKED-D-GAVLGTEDAPLTPFTSD 490 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G-------~~Ga~v~~~~~-~-~~v~a~~~~~v~~~vVD 490 (575)
|.......+.. . ..+++++|.+.|++.||||.| ..|++++++++ . .+++. +.+ .+|
T Consensus 155 g~~~~~~~~~~-~--------~~~aa~~L~~~g~~~Vvvtgg~~~~~~g~~g~~~~~~~~~~~~~~~~---~~~---~~d 219 (291)
T 3mbh_A 155 DEPYKADSTDE-E--------LKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTC---PYL---PAH 219 (291)
T ss_dssp TCCCCSCCCHH-H--------HHHHHHHHHHTSCSEEEEEEEEETTEEEEEEEEEEETTTTEEEEEEE---SCC---GGG
T ss_pred CCCCCCCCCHH-H--------HHHHHHHHHhhCCCEEEEEeccccCCCCcEEEEEEeCCCCeEEEEEe---ccc---CCC
Confidence 97643100000 0 236678888889999999965 35778887642 2 23433 333 389
Q ss_pred ccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccc
Q 008161 491 MSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 491 TtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
++||||+|.|+|+++|++| .++.+|+++|+++++.++..
T Consensus 220 t~GaGD~f~aai~a~l~~g-------~~l~~A~~~A~~~~~~ai~~ 258 (291)
T 3mbh_A 220 YPGTGDTFTSVITGSLMQG-------DSLPMALDRATQFILQGIRA 258 (291)
T ss_dssp STTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999998877764
No 59
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=99.66 E-value=1.2e-15 Score=157.05 Aligned_cols=165 Identities=9% Similarity=0.023 Sum_probs=116.9
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcC------CEEEEcCCCCCc--cccChhHHHHHHHHhcccCeEEeCCHH
Q 008161 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG------GIIFYDVNLPLP--LWQSGEETKMFIQQAWTLADVIEVTKQ 413 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G------~~Vv~D~~~~~~--l~~~~~~~~~~l~~ll~~aDII~~N~~ 413 (575)
..+|+|.++.++ +....+.+.++++.+++.+ .++++||++... +|. .++..+.+.++++++|+|+||..
T Consensus 75 ~~~daV~tG~l~--s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~~-~~~~~~~~~~Ll~~adiitPN~~ 151 (300)
T 3zs7_A 75 SNYRYILTGYIN--NVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMYC-KKEVLDAYRELVPLADIVTPNYF 151 (300)
T ss_dssp GGCSEEEECCCC--CHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC----------CTHHHHHHHHGGGCSEECCCHH
T ss_pred ccCCEEEECCCC--CHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCeec-CHHHHHHHHHHhhhCCEecCCHH
Confidence 468887765332 3445677788888877655 799999976654 664 34455667779999999999999
Q ss_pred HHHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcc----e--EEEe-c------CCCeeEeccc
Q 008161 414 ELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK----V--HYYT-K------EDDGAVLGTE 480 (575)
Q Consensus 414 Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~G----a--~v~~-~------~~~~~v~a~~ 480 (575)
|++.|+|....+..+ ..++++.|++.|++.||||.|..| + +++. . +...+++.
T Consensus 152 Ea~~L~g~~~~~~~~------------~~~aa~~L~~~G~~~Vvvt~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~-- 217 (300)
T 3zs7_A 152 EASLLSGVTVNDLSS------------AILAADWFHNCGVAHVIIKSFREQENPTHLRFLYSVKEGSEAAVRRFSGVV-- 217 (300)
T ss_dssp HHHHHHSSCCCSHHH------------HHHHHHHHHHHTCSEEEEEEEC---CCSEEEEEEEECCSTTSCCEEEEEEE--
T ss_pred HHHHHhCCCCCCHHH------------HHHHHHHHHHhCCCEEEEecCcCCCCCceEEEEEeccccccCCCeEEEEEe--
Confidence 999999986543221 236778888889999999999987 2 3333 3 12223332
Q ss_pred CCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHcc
Q 008161 481 DAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 481 ~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
+.++ +|++|+||+|.|+|+++| +| .++.+|+++|+++...++.
T Consensus 218 -~~v~---~~~~GtGD~fsaal~a~l-~g-------~~~~~Av~~A~~~v~~~i~ 260 (300)
T 3zs7_A 218 -PYHE---GRYTGTGDVFAACLLAFS-HS-------HPMDVAIGKSMAVLQELII 260 (300)
T ss_dssp -ECCS---SCBTTHHHHHHHHHHHHH-TT-------SCHHHHHHHHHHHHHHHHH
T ss_pred -ccCC---CCCcCHHHHHHHHHHHHH-cC-------CCHHHHHHHHHHHHHHHHH
Confidence 3443 489999999999999999 89 8999999999999766654
No 60
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*
Probab=99.44 E-value=9.1e-13 Score=133.50 Aligned_cols=187 Identities=10% Similarity=-0.003 Sum_probs=115.8
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc--cCeEEeCCHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDII~~N~~Ea 415 (575)
.+.+..++++++..-. .++...+.+.++++.+++.|+++++||...... ....+...++++ ++|+|+||..|+
T Consensus 53 ~~~~~~a~~lvi~~G~-~~~~~~~~~~~~~~~a~~~~~pvVlDp~g~~~~----~~~~~~~~~ll~~~~~~vitPN~~E~ 127 (272)
T 1ekq_A 53 ADMAKIAGALVLNIGT-LSKESVEAMIIAGKSANEHGVPVILDPVGAGAT----PFRTESARDIIREVRLAAIRGNAAEI 127 (272)
T ss_dssp HHHHHHSSEEEEECTT-CCHHHHHHHHHHHHHHHHTTCCEEEECTTBTTB----HHHHHHHHHHHHHSCCSEEEECHHHH
T ss_pred HHHHHhCCEEEEECCC-CCHHHHHHHHHHHHHHHhcCCeEEEeCCCcCcc----cchHHHHHHHHccCCCeEECCCHHHH
Confidence 3456778998885322 233456778888998989999999998643211 111233445666 899999999999
Q ss_pred HHhhCCC-CCc-cc---cccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccC
Q 008161 416 EFLCGIK-PTE-EF---DTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSD 490 (575)
Q Consensus 416 ~~L~g~~-~~~-~~---d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVD 490 (575)
..|+|.. ... .- +..++ ..+.++.|.+++...||+| |..+ ++++++....++. ... .+.|
T Consensus 128 ~~L~g~~~~~~~gvd~~~~~~~--------~~~aa~~l~~~~~~vVv~~-G~~~-~i~~~~~~~~~~~---~~~--~~~~ 192 (272)
T 1ekq_A 128 AHTVGVTDWLIKGVDAGEGGGD--------IIRLAQQAAQKLNTVIAIT-GEVD-VIADTSHVYTLHN---GHK--LLTK 192 (272)
T ss_dssp HHHCC---------------HH--------HHHHHHHHHHHHTSEEEEC-SSSE-EEECSSCEEEECC---CCG--GGGG
T ss_pred HHHhCCCcccccCccCCCCHHH--------HHHHHHHHHHHcCCEEEEE-CCCC-EEEeCCEEEEEcC---CCc--cccC
Confidence 9999865 310 00 00000 1355667766644456666 9887 5555443333332 222 2679
Q ss_pred ccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHH----HHHHHccc---cccCCCCCCHHHHHhhh
Q 008161 491 MSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAID----CGVRDQWS---QARTLGYPPKGGMEEEV 553 (575)
Q Consensus 491 TtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~a----aAA~~v~~---~G~~~~~pt~eeve~~l 553 (575)
++|+||+|.|.+.+.++.| .++.+|+++|++ ||..+... .|. +....+.++++.
T Consensus 193 ttGaGD~lag~iaa~la~g-------~~~~~A~~~A~~~~~~A~~~a~~~~~~~g~--g~~~~~~id~l~ 253 (272)
T 1ekq_A 193 VTGAGCLLTSVVGAFCAVE-------ENPLFAAIAAISSYGVAAQLAAQQTADKGP--GSFQIELLNKLS 253 (272)
T ss_dssp STTHHHHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHhccCCCCC--ChHHHHHHHHHH
Confidence 9999999988888888888 899999999996 55544432 343 333444444443
No 61
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=99.38 E-value=3.4e-12 Score=141.66 Aligned_cols=159 Identities=13% Similarity=0.050 Sum_probs=112.0
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC----ccccChhHHHHHHH-HhcccCeEEeCCHHHHHH
Q 008161 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL----PLWQSGEETKMFIQ-QAWTLADVIEVTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~----~l~~~~~~~~~~l~-~ll~~aDII~~N~~Ea~~ 417 (575)
..|.|.++.. +....+.+.++++..++.+.+|++||+... .+|. ++..+.+. .+++.+|||+||..|++.
T Consensus 91 ~~daIkiG~l---s~~~i~~v~~~l~~~~~~~~~vVlDPvm~a~~g~~l~~--~~~~~~l~~~Ll~~a~iitPN~~Ea~~ 165 (550)
T 3rm5_A 91 KCNVIKTGML---TAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLAG--KDIVSLITEKVAPFADILTPNIPECYK 165 (550)
T ss_dssp CCSEEEECSC---CHHHHHHHHHHHHHHGGGSCEEEECCCC---------C--TTHHHHHHHHTGGGCSEECCBHHHHHH
T ss_pred CCCEEEECCC---CHHHHHHHHHHHHHhcccCCCEEEecceecCCCCcCCC--HHHHHHHHHHhhCcceEEecCHHHHHH
Confidence 6788888643 555667777777777666889999997642 3332 23344444 789999999999999999
Q ss_pred hhCCC--CCccccccccccccccCCcHHHHHHHHhcCC-cEEEEecCCcc--------e--EEEe-cCC-CeeEecccCC
Q 008161 418 LCGIK--PTEEFDTKNNARSKFVHYEPEVIAPLWHENL-KVLFVTNGTSK--------V--HYYT-KED-DGAVLGTEDA 482 (575)
Q Consensus 418 L~g~~--~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~-k~VVVT~G~~G--------a--~v~~-~~~-~~~v~a~~~~ 482 (575)
|+|.. ..+..+ ..++++.|.+.|. +.||||.|..+ + +++. .++ ...++. +
T Consensus 166 L~g~~~~i~~~~d------------~~~aa~~L~~~g~~~~VvvkgG~~~~~g~~~~~~~d~l~~~~~~~~~~~~~---~ 230 (550)
T 3rm5_A 166 LLGEERKVNGLQD------------IFQIAKDLAKITKCSNILVKGGHIPWNDEKEKYITDVLFLGAEQKFIIFKG---N 230 (550)
T ss_dssp HHSCCCCCCSSHH------------HHHHHHHHHHHHCCSCEEEEECC-------CCEEEEEEEETTTTEEEEEEE---E
T ss_pred HhCCCCCCCCHHH------------HHHHHHHHHHhCCCCEEEEeCCCCCcccCCCCeEEEEEEEcCCCeEEEEEe---c
Confidence 99974 221111 2366778888776 89999998763 3 4554 332 223333 3
Q ss_pred CCCCcccCccCchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHH
Q 008161 483 PLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCG 530 (575)
Q Consensus 483 ~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaA 530 (575)
.++ ++||+|+||+|.|+|++.|++| .++.+|+++|++.-
T Consensus 231 ~v~--~~~t~GtGD~fsaaiaa~La~G-------~~l~eAv~~A~~~v 269 (550)
T 3rm5_A 231 FVN--TTHTHGTGCTLASAIASNLARG-------YSLPQSVYGGIEYV 269 (550)
T ss_dssp CCC--CSCCBTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHH
T ss_pred CcC--CCCCcChhHHHHHHHHHHHHcC-------CCHHHHHHHHHHHH
Confidence 343 6899999999999999999999 99999999999643
No 62
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=98.90 E-value=9.6e-09 Score=103.51 Aligned_cols=170 Identities=14% Similarity=0.076 Sum_probs=104.3
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc-cCeEEeCCHHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELE 416 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDII~~N~~Ea~ 416 (575)
.+.+..+++++++. .+.++...+.+..+++.+++.++++++||...... ....+....++. .++||+||..|+.
T Consensus 51 ~~~~~~~dalvi~~-G~~~~~~~~~~~~~~~~a~~~~~pvVlDpv~~~~~----~~~~~~~~~ll~~~~~vITPN~~E~~ 125 (265)
T 1v8a_A 51 EEMIRLADAVVINI-GTLDSGWRRSMVKATEIANELGKPIVLDPVGAGAT----KFRTRVSLEILSRGVDVLKGNFGEIS 125 (265)
T ss_dssp HHHHHHCSEEEEEC-TTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTB----HHHHHHHHHHHHHCCSEEEEEHHHHH
T ss_pred HHHHHHCCEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCcEEEcCcccccc----ccCHHHHHHHHHhCCcEEcCCHHHHH
Confidence 35677899999863 22233334566777888888999999998642211 111222334443 3899999999999
Q ss_pred HhhCCCCCcc-ccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCch
Q 008161 417 FLCGIKPTEE-FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 417 ~L~g~~~~~~-~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAG 495 (575)
.|+|...... -+...... +...+.++++.+++...|++| |..+. +++++..+.++. ... ...+++|+|
T Consensus 126 ~L~g~~~~~~gvd~~~~~~----~~~~~aa~~la~~~~~~Vvlk-G~~d~-i~~~~~~~~~~~---g~~--~~~~~~GtG 194 (265)
T 1v8a_A 126 ALLGEEGKTRGVDSLEYGE----EEAKKLTMNAAREFNTTVAVT-GAVDY-VSDGRRTFAVYN---GHE--LLGRVTGTG 194 (265)
T ss_dssp HHHHHHC----------CH----HHHHHHHHHHHHHTTSEEEEE-SSSEE-EECSSCEEEECC---CCG--GGGGSTTHH
T ss_pred HHhCCcccccCcCcccccH----HHHHHHHHHHHHHhCcEEEEc-CCCcE-EEcCCEEEEEcC---CCc--CcCCccChh
Confidence 9998542100 00000000 002356777777665677777 77664 445443333322 121 245999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHH
Q 008161 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGV 531 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA 531 (575)
|+|.|.+.+.|++| .+ .+|+..|...-+
T Consensus 195 D~Lsg~iaa~lA~g-------~~-~~Aa~~a~~~~~ 222 (265)
T 1v8a_A 195 CMVAALTGAFVAVT-------EP-LKATTSALVTFG 222 (265)
T ss_dssp HHHHHHHHHHHTTS-------CH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-------CC-HHHHHHHHHHHH
Confidence 99999999999999 77 778777765433
No 63
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=98.67 E-value=1.1e-07 Score=98.03 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=94.1
Q ss_pred hhhccCcEEEEeccccc-ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHH---h-c-ccCeEEeCCH
Q 008161 339 DVLKEAKMFYFSTHSML-ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ---A-W-TLADVIEVTK 412 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~-~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~---l-l-~~aDII~~N~ 412 (575)
..+..++++.++- .+. +....+.+.++++.++ .++++++|+.. ...+.. + + +.++||+||.
T Consensus 121 ~~~~~~dav~IG~-Gl~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g-----------~~ll~~~~~l~L~~~~~viTPN~ 187 (311)
T 3bgk_A 121 EQITAADVVLMGP-GLAEDDLAQTTFDVVWQAIE-PKQTLIIDGSA-----------INLLAKRKPAIWPTKQIILTPHQ 187 (311)
T ss_dssp HHHHHCSEEEECT-TCCSSHHHHHHHHHHHHHCC-TTSEEEEETHH-----------HHHHHHCC-CCCSCSCEEEECCS
T ss_pred HHhccCCEEEEcC-CCCCCHHHHHHHHHHHHHcC-CCCeEEEeCCh-----------hhhhccChhhcCCCCCEEECCcH
Confidence 3455788888862 122 3333455555665544 58899999731 111211 1 3 4689999999
Q ss_pred HHHHHhhCCCCCccccccccccccccCCc-HHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCc
Q 008161 413 QELEFLCGIKPTEEFDTKNNARSKFVHYE-PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 413 ~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~-~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDT 491 (575)
.|++.|+|....+..+. . .+.+++|.+ + .+|+..| .+.++++ ++..++.. ...+ ..++
T Consensus 188 ~E~~~L~g~~~~~~~~d-----------~~~~aa~~l~~-g--~~VvlkG-~~~~i~~-~~~~~~~~---~~~~--~~~t 246 (311)
T 3bgk_A 188 KEWERLSGLTIPEQIEA-----------ATQTALAHFPK-E--TILVAKS-HQTKIYQ-GQKIGHIQ---VGGP--YQAT 246 (311)
T ss_dssp CC-CTTTCCCSTTCCHH-----------HHHHHHTTSCT-T--CEEEECS-SSCEEEE-TTEEEEEC---CCCG--GGCS
T ss_pred HHHHHHhCCCCCcchhh-----------HHHHHHHHHhc-C--CEEEEeC-CCeEEEE-CCEEEEEC---CCCC--CCCC
Confidence 99999998764321000 1 244555555 4 3455555 5666766 43333332 2233 6789
Q ss_pred cCchHHHHHHHHHHH-Hc-CCCCCCCchhHHHHHHHHHHHHHHHc
Q 008161 492 SASGDGIVAGIMRML-TV-QPHLITDKGYLVRTIKYAIDCGVRDQ 534 (575)
Q Consensus 492 tGAGDaF~AGfl~~L-~~-g~~~~~d~~sl~eAl~~A~aaAA~~v 534 (575)
+|+||+| +|+++++ ++ | .++.+|+.+|+.+.+.+.
T Consensus 247 ~GtGD~L-ag~iaa~lA~~g-------~~~~eA~~~A~~~~~~ag 283 (311)
T 3bgk_A 247 GGMGDTL-AGMIAGFVAQFH-------TDRFEVAAAAVFLHSYIA 283 (311)
T ss_dssp TTHHHHH-HHHHHHHHHHCC-------SCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHHHHccC-------CCHHHHHHHHHHHHHHHH
Confidence 9999997 6666665 68 8 899999999987776643
No 64
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=98.64 E-value=4.3e-07 Score=93.43 Aligned_cols=153 Identities=11% Similarity=0.052 Sum_probs=92.2
Q ss_pred hhhccCcEEEEeccccc-ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHH---Hhc--ccCeEEeCCH
Q 008161 339 DVLKEAKMFYFSTHSML-ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQ---QAW--TLADVIEVTK 412 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~-~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~---~ll--~~aDII~~N~ 412 (575)
..+..++++.++- .+. +....+.+.++++.++ .++++++|+... ..+. .++ +.++||+||.
T Consensus 107 ~~~~~~dav~IG~-Gl~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~-----------~ll~~~~~~l~~~~~~viTPN~ 173 (310)
T 2r3b_A 107 NVVEQADVILIGP-GLGLDATAQQILKMVLAQHQ-KQQWLIIDGSAI-----------TLFSQGNFSLTYPEKVVFTPHQ 173 (310)
T ss_dssp HHHHHCSEEEECT-TCCSSHHHHHHHHHHHHHCC-TTCEEEEETHHH-----------HHHHHTTCCCSSGGGEEEECCH
T ss_pred HHhccCCEEEEeC-CCCCCHHHHHHHHHHHHhcC-CCCcEEEcCCcc-----------hhcccchhhhcCCCCEEEcCCH
Confidence 3455788888862 122 2233455556665444 588999997311 1111 123 4689999999
Q ss_pred HHHHHhhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCcc
Q 008161 413 QELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 413 ~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTt 492 (575)
.|+..|+|....+..+ +. ..+.++++ ++ +|+..| .+.++++ ++..++.. ...+ ..+++
T Consensus 174 ~E~~~L~g~~~~~~~~---~~-------a~~aA~~l---g~--~VvlKG-~~~vi~~-~~~~~~~~---~g~~--~~~t~ 231 (310)
T 2r3b_A 174 MEWQRLSHLPIEQQTL---AN-------NQRQQAKL---GS--TIVLKS-HRTTIFH-AGEPFQNT---GGNP--GMATG 231 (310)
T ss_dssp HHHHHHHCCCGGGCCH---HH-------HHHHHHHH---TS--EEEECS-TTCEEEC-SSSCEECC---CCCG--GGCST
T ss_pred HHHHHHhCCCCCcccc---hH-------HHHHHHHh---Cc--EEEEeC-CceEEEE-CCEEEEEC---CCCC--CCCCC
Confidence 9999999976432110 00 02445555 43 455556 4566666 33333321 2232 57899
Q ss_pred CchHHHHHHHHHHH-HcCCCCCCCchhHHHHHHHHHHHHHHHc
Q 008161 493 ASGDGIVAGIMRML-TVQPHLITDKGYLVRTIKYAIDCGVRDQ 534 (575)
Q Consensus 493 GAGDaF~AGfl~~L-~~g~~~~~d~~sl~eAl~~A~aaAA~~v 534 (575)
|+||+| +|+++++ ++| .++.+|+.+|+.+.+.+-
T Consensus 232 GtGD~L-ag~Iaa~lA~g-------~~~~eA~~~A~~~~~~ag 266 (310)
T 2r3b_A 232 GTGDTL-AGIIAGFLAQF-------KPTIETIAGAVYLHSLIG 266 (310)
T ss_dssp THHHHH-HHHHHHHHHHS-------CSSHHHHHHHHHHHHHHH
T ss_pred ChHHHH-HHHHHHHHHcC-------CCHHHHHHHHHHHHHHHH
Confidence 999997 5555555 688 889999999987776643
No 65
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=98.54 E-value=2.3e-06 Score=86.37 Aligned_cols=172 Identities=10% Similarity=0.056 Sum_probs=104.6
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhc-ccCeEEeCCHHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW-TLADVIEVTKQELE 416 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll-~~aDII~~N~~Ea~ 416 (575)
.+.++.++.++++-- .+.+...+.+..+++.+++.+++|++||...... ....+....++ ..++||+||..|+.
T Consensus 53 ~e~~~~a~alvIn~G-~l~~~~~~~~~~a~~~a~~~~~PvVlDPVg~gas----~~r~~~~~~Ll~~~~~VItpN~~E~~ 127 (273)
T 3dzv_A 53 PQMFQQTSALVLNLG-HLSQEREQSLLAASDYARQVNKLTVVDLVGYGAS----DIRNEVGEKLVHNQPTVVKGNLSEMR 127 (273)
T ss_dssp HHHHTTCSEEEEECC-SCCHHHHHHHHHHHHHHHHTTCCEEEECTTTTSC----HHHHHHHHHHHHTCCSEEEEEHHHHH
T ss_pred HHHHHHCCeEEEecC-CCChHHHHHHHHHHHHHHHcCCcEEEchhhcCCc----ccCHHHHHHHHhcCCcEECCCHHHHH
Confidence 456778999998732 2343345677888888899999999998643211 11112222222 36899999999999
Q ss_pred HhhCCCCCcc-ccc--cccccccccCCcHHHHHHHHhcCC-cEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCcc
Q 008161 417 FLCGIKPTEE-FDT--KNNARSKFVHYEPEVIAPLWHENL-KVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 417 ~L~g~~~~~~-~d~--~~~~~~~~~~~~~e~~~~L~~~g~-k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTt 492 (575)
.|+|...... -|. .+...+.+ ....+.++++.++.. ..|++|-+.. ++++++..+.++. ... ..-.++
T Consensus 128 ~L~g~~~~~~GVds~~~~~~~~~~-~d~~~aa~~la~~~~~~~VvlkG~~D--~i~dg~~~~~~~~---G~~--~~~~v~ 199 (273)
T 3dzv_A 128 TFCQLVSHGRGVDGSPLDQSEEAI-EELIQALRQQTQKFPQTVFLATGIQD--VLVSQEQVIVLQN---GVP--ELDCFT 199 (273)
T ss_dssp HHTTCCCC-------CGGGSHHHH-HHHHHHHHHHHHHSTTCEEEEESSSE--EEECSSCEEEECC---CCG--GGGSST
T ss_pred HHhCCcccccccccccccchhhhh-HHHHHHHHHHHHHhCCeEEEEECCee--EEEcCCEEEEeCC---CCc--ccCCcC
Confidence 9999753210 000 00000000 001356677776654 6788875432 4444443222221 111 145679
Q ss_pred CchHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHH
Q 008161 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDC 529 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aa 529 (575)
|+||++.|.+.+.|+.| .++.+|+..|...
T Consensus 200 GtGc~Ls~~Iaa~lA~g-------~~~~~Aa~~A~~~ 229 (273)
T 3dzv_A 200 GTGDLVGALVAALLGEG-------NAPMTAAVAAVSY 229 (273)
T ss_dssp THHHHHHHHHHHHHHHT-------CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCC-------CCHHHHHHHHHHH
Confidence 99999999999999999 8888888877654
No 66
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A
Probab=98.44 E-value=3.9e-06 Score=90.27 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=100.3
Q ss_pred EEecCChHHHHHHHHHHcCC-CeEEEEEeCCChHHHHHHHHHHhCCCccce-----E---E----EcCCCCCeEEEEEEc
Q 008161 247 IRSPGGCTGSAAIALARLGG-KVAFMGKLGDDEYGQAMLYYMNVNNVQTRS-----V---R----IDAKRPTAVSQMKIG 313 (575)
Q Consensus 247 ~~~~GG~a~NvA~aLarLG~-~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~-----v---~----~~~~~~T~~~~i~vd 313 (575)
....||.|.-+|..|+.+|. +|.+++.++.... .+.| ..+|-+-. + . +.++.+.-+-+|+-.
T Consensus 113 ~~~~GGnA~imAn~La~lg~~~Vi~~~p~~sk~~----~~ll-~~~i~~p~~e~g~l~l~~~~ea~~~~~~~~iH~I~Ey 187 (474)
T 3drw_A 113 EERLGGQAGIIANTLAGLKIRKVIAYTPFLPKRL----AELF-KKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEF 187 (474)
T ss_dssp EEEEESHHHHHHHHHHHTTCSEEEECCSCCCHHH----HTTS-CTTEEEEEESSSSEEEEEGGGCCCTTCCCCEEEEEEE
T ss_pred eEecCChHHHHHHHHHHcCCCcEEEecCcCCHHH----HHhc-CCcceeecccCCceeecCchhhhccCCCCCcEEEEEc
Confidence 56799999999999999999 5888887776433 3334 22232110 0 0 000111223333333
Q ss_pred CCC--------------CeEEEEecCCccc-cCC-ccccc---hhhhccCcEEEEeccccccc-----ch----HHHHHH
Q 008161 314 KRG--------------RLRMTCVKPCAED-ALT-KSEIN---IDVLKEAKMFYFSTHSMLER-----NM----KSTTLQ 365 (575)
Q Consensus 314 ~~G--------------er~~~~~~~ga~~-~lt-~e~i~---~~~l~~ad~v~~sg~~l~~~-----~~----~e~~~~ 365 (575)
..| .++|++.....+. .+. .+++. .+..+.+|.++++|+.++.. .. .+.+.+
T Consensus 188 ~~G~~~~~~~~~~~aPraNRfI~s~D~~N~~~l~~~e~f~~~l~e~~~~~d~~vLSGlq~m~~~y~dg~~~~~~l~~~~e 267 (474)
T 3drw_A 188 RKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYLRRAKE 267 (474)
T ss_dssp CTTCEEESSSCEEECCSCEEEEEEECCSGGGCCSCCTTTGGGHHHHHHHCSEEEECCGGGCCSBCTTSCBHHHHHHHHHH
T ss_pred CCCCeeecCCceEEccCCCeEEEEcCCCCHHhccccHHHHHHHHHhhcCCCEEEEeccccccccccccccHHHHHHHHHH
Confidence 333 3345544333333 332 23332 12233699999999876654 22 233335
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCC
Q 008161 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 366 ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~ 421 (575)
.++..+..+++|-|...+.. +.+.....+..+++++|.|=+|++|+..+++.
T Consensus 268 ~i~~l~~~~~~iH~E~As~~----~~~l~~~i~~~i~p~vDSlGmNEqELa~l~~~ 319 (474)
T 3drw_A 268 DIIEFKEKDVKIHVEFASVQ----DRKLRKKIITNILPFVDSVGIDEAEIAQILSV 319 (474)
T ss_dssp HHHHHHHTTCEEEEECCCCS----CHHHHHHHHHHTGGGSSEEEEEHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEeCccc----cHHHHHHHHHHhcccccccccCHHHHHHHHHH
Confidence 55566678999999976433 23455677788999999999999999998764
No 67
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A
Probab=98.25 E-value=1.2e-05 Score=81.38 Aligned_cols=172 Identities=11% Similarity=0.024 Sum_probs=100.3
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhC
Q 008161 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g 420 (575)
+..+|++.++. .+.. .+...++++.+.+.+.++++|...-. + . .+ ......+||+||..|+..|+|
T Consensus 96 l~~~davviGP--Glg~--~~~~~~~~~~~l~~~~p~VlDAdal~-~-~-------~l-~~~~~~~vlTPN~~E~~~L~g 161 (279)
T 3rpz_A 96 EETYRAIAIGP--GLPQ--TESVQQAVDHVLTADCPVILDAGALA-K-R-------TY-PKREGPVILTPHPGEFFRMTG 161 (279)
T ss_dssp SSCCSEEEECT--TCCC--CHHHHHHHHHHTTSSSCEEECGGGCC-S-C-------CC-CCCSSCEEECCCHHHHHHHHC
T ss_pred ccCCCEEEECC--CCCC--CHHHHHHHHHHHhhCCCEEEECCccc-h-h-------hh-hhccCCEEEecCHHHHHHHhC
Confidence 46789999862 1221 12345566666677889999974211 0 0 00 012457899999999999999
Q ss_pred CCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHHHHH
Q 008161 421 IKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVA 500 (575)
Q Consensus 421 ~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDaF~A 500 (575)
....+.. +...+.++++.++....| |-.|. +.+++++++..++.. ...+ ...++|+||+|.+
T Consensus 162 ~~~~~~~-----------~d~~~aa~~la~~~~~~V-vlKG~-~~vi~~~~g~~~~~~---~g~~--~~at~GtGD~Lag 223 (279)
T 3rpz_A 162 VPVNELQ-----------KKRAEYAKEWAAQLQTVI-VLKGN-QTVIAFPDGDCWLNP---TGNG--ALAKGGTGDTLTG 223 (279)
T ss_dssp CCHHHHT-----------TSHHHHHHHHHHHHTSEE-EECST-TCEEECTTSCEEECC---CCCG--GGCSTTHHHHHHH
T ss_pred CCccchH-----------HHHHHHHHHHHHHcCeEE-EEeCC-CcEEECCCceEEEeC---CCCC--CCCCCChHHHHHH
Confidence 7532110 002355666665432344 44454 456666554333321 1222 5789999998755
Q ss_pred HHHHHHHcCCCCCCCchhHHHHHHHHHH----HHHHHccccccCCCCCCHHHHHhhh
Q 008161 501 GIMRMLTVQPHLITDKGYLVRTIKYAID----CGVRDQWSQARTLGYPPKGGMEEEV 553 (575)
Q Consensus 501 Gfl~~L~~g~~~~~d~~sl~eAl~~A~a----aAA~~v~~~G~~~~~pt~eeve~~l 553 (575)
.+.+.|++| .++.+|+..|+. +|-......|.. ++ ...+|-+.|
T Consensus 224 ~iaa~lA~g-------~~~~~A~~~a~~lh~~Ag~~a~~~~g~~-~~-~a~dl~~~l 271 (279)
T 3rpz_A 224 MILGMLCCH-------EDPKHAVLNAVYLHGACAELWTDEHSAH-TL-LAHELSDIL 271 (279)
T ss_dssp HHHHHHHHC-------SSHHHHHHHHHHHHHHHHHHHHHHSCTT-SC-CHHHHHHHH
T ss_pred HHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHhcCCC-Cc-CHHHHHHHH
Confidence 555556788 899999998864 344444445543 33 445554443
No 68
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=98.25 E-value=3.8e-06 Score=91.78 Aligned_cols=157 Identities=10% Similarity=-0.004 Sum_probs=96.4
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHH-HHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHH
Q 008161 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIK-ISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEF 417 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~-~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~ 417 (575)
+.+..++++.++.-...+ +....+++ .+++.++++++|+.... +. . .+.+ ...+..+||+||..|+..
T Consensus 316 ~~~~~~davviGpGlg~~----~~~~~~~~~~l~~~~~pvVlDadgl~-~l--~---~~ll-~~~~~~~vlTPN~~E~~~ 384 (502)
T 3rss_A 316 ELSKDVDVVAIGPGLGNN----EHVREFVNEFLKTLEKPAVIDADAIN-VL--D---TSVL-KERKSPAVLTPHPGEMAR 384 (502)
T ss_dssp HHHTTCSEEEECTTCCCS----HHHHHHHHHHHHHCCSCEEECHHHHH-TC--C---HHHH-HHCSSCEEECCCHHHHHH
T ss_pred HHhccCCEEEEeCCCCCC----HHHHHHHHHHHHhcCCCEEEeCcccc-hh--c---HHHH-hccCCCEEEeCCHHHHHH
Confidence 456789999997321111 12223333 34566899999974211 10 0 1222 223568999999999999
Q ss_pred hhCCCCCccccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCchHH
Q 008161 418 LCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDG 497 (575)
Q Consensus 418 L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAGDa 497 (575)
|+|....+. .+. .+.++++.+++ ..+||..|. +.++++++ ..++.. ...+ ..+|+|+||+
T Consensus 385 L~g~~~~~~-----------~~d-~~aa~~la~~~-~~~VvlKG~-~~vi~~~~-~~~~~~---~g~~--~~at~GsGD~ 444 (502)
T 3rss_A 385 LVKKTVGDV-----------KYN-YELAEEFAKEN-DCVLVLKSA-TTIVTDGE-KTLFNI---TGNT--GLSKGGSGDV 444 (502)
T ss_dssp HHTCCHHHH-----------TTC-HHHHHHHHHHH-TSEEEECSS-SEEEECSS-CEEEEC---CCCG--GGSSTTHHHH
T ss_pred HhCCCccch-----------HHH-HHHHHHHHHHc-CCEEEEeCC-CeEEEcCC-EEEEEC---CCCC--ccccCCchHH
Confidence 999753210 011 35666666553 235555565 45566655 333322 1222 5789999999
Q ss_pred HHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHH
Q 008161 498 IVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRD 533 (575)
Q Consensus 498 F~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~ 533 (575)
|.|.+.+.|++| .++.+|+.+|+..-+.+
T Consensus 445 Lag~iaa~lA~g-------~~~~~Aa~~A~~~hg~A 473 (502)
T 3rss_A 445 LTGMIAGFIAQG-------LSPLEASTVSVYLHGFA 473 (502)
T ss_dssp HHHHHHHHHHTT-------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------CCHHHHHHHHHHHHHHH
Confidence 888777778889 89999999998776665
No 69
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=98.12 E-value=4.1e-05 Score=82.33 Aligned_cols=162 Identities=11% Similarity=0.087 Sum_probs=98.4
Q ss_pred ecCChHHHHHHHHHHcCCCeEE--EEEeCCChHHHHHHHHHHhCCCccceEE--E---------cCCCCCeEEEEEEcCC
Q 008161 249 SPGGCTGSAAIALARLGGKVAF--MGKLGDDEYGQAMLYYMNVNNVQTRSVR--I---------DAKRPTAVSQMKIGKR 315 (575)
Q Consensus 249 ~~GG~a~NvA~aLarLG~~v~l--vg~VG~D~~G~~i~~~L~~~GVdt~~v~--~---------~~~~~T~~~~i~vd~~ 315 (575)
..||.|..+|..|+.+|.++.+ ++.+|. .+.+.|...+|.+-.+. . .......+-+|+-...
T Consensus 109 ~~GGnA~imAn~la~lg~~~vl~~~~~l~~-----~~~~lf~~~~i~~p~~~~~~~~l~~~~e~~~~~~~~iH~I~Ef~~ 183 (455)
T 1ua4_A 109 RMGGQAGIMANLLGGVYGVPVIVHVPQLSR-----LQANLFLDGPIYVPTLENGEVKLIHPKEFSGDEENCIHYIYEFPR 183 (455)
T ss_dssp EEESHHHHHHHHHTTTTCCCEEECCSCCCH-----HHHTTSCSSSEEEEEEETTEEEEECGGGCSCCCCCCEEEEEEECT
T ss_pred ccCCcHHHHHHHHHHcCCCEEEEeCCCCCH-----HHHHhcCCCCeEeecccCCccccccchhhccCCCCCceEEEEcCC
Confidence 8999999999999999999887 776665 24444442344330010 0 0022344555554455
Q ss_pred CC----------eEEEEecCCccccCC-ccccchhhh----ccCcEEEEecccccccch----HHHHHHHHHHHhhcCCE
Q 008161 316 GR----------LRMTCVKPCAEDALT-KSEINIDVL----KEAKMFYFSTHSMLERNM----KSTTLQAIKISKQFGGI 376 (575)
Q Consensus 316 Ge----------r~~~~~~~ga~~~lt-~e~i~~~~l----~~ad~v~~sg~~l~~~~~----~e~~~~ll~~ak~~G~~ 376 (575)
|. ++|++.....+..+. .+.+ .+.+ ..+|.++++|+.++...+ .+..++.+......+++
T Consensus 184 G~~~~~~~aPraNRfI~s~D~~n~~l~~~e~f-~~~l~e~~~~~dl~vlSG~q~l~~~~~~~~~~~~l~~i~~L~~~~~~ 262 (455)
T 1ua4_A 184 GFRVFEFEAPRENRFIGSADDYNTTLFIREEF-RESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLEVLNEREIP 262 (455)
T ss_dssp TCEETTEECSSCEEEEEECCSSGGGTCCCGGG-STTHHHHGGGCSEEEECCGGGCCTTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCeecceeccccceeEEecCCCcccCcccHHH-HHHHHhhccCCcEEEEechhcccccchHHHHHHHHHHHHHhcCCCce
Confidence 53 345444333333332 2233 2333 349999999987765532 22222222233667899
Q ss_pred EEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCC
Q 008161 377 IFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 377 Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~ 421 (575)
|.|++.+... .+.....+ .+++++|.|-+|++|+..+.+.
T Consensus 263 iH~ElAs~~~----~~~~~~i~-~ilp~vDSlGmNE~EL~~l~~~ 302 (455)
T 1ua4_A 263 VHLEFAFTPD----EKVREEIL-NVLGMFYSVGLNEVELASIMEI 302 (455)
T ss_dssp EEEECCCCCC----HHHHHHHH-HHGGGCSEEEECHHHHHHHHHH
T ss_pred EEEEeCCccC----HHHHHHHH-hhhccCcccccCHHHHHHHHHH
Confidence 9999865432 33445666 8999999999999999888653
No 70
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=97.75 E-value=0.00083 Score=73.93 Aligned_cols=168 Identities=16% Similarity=0.073 Sum_probs=98.6
Q ss_pred hhhcc-CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcc--cCeEEeCCHHHH
Q 008161 339 DVLKE-AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQEL 415 (575)
Q Consensus 339 ~~l~~-ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDII~~N~~Ea 415 (575)
+..+. ++.++++--. +.. .+.+..+++.+++.+++|++||...... ....+....+++ .++||++|..|+
T Consensus 301 e~~~~~~~alvin~G~-l~~--~~~~~~a~~~a~~~~~PvVlDPVg~~a~----~~r~~~~~~Ll~~~~~~vItpN~~E~ 373 (540)
T 3nl6_A 301 DLAAIPHATLLLNTGS-VAP--PEMLKAAIRAYNDVKRPIVFDPVGYSAT----ETRLLLNNKLLTFGQFSCIKGNSSEI 373 (540)
T ss_dssp HHTTSTTCEEEEESSC-SCC--HHHHHHHHHHHHTTTCCEEEECTTCTTS----HHHHHHHHHHTTSCCCSEEEECHHHH
T ss_pred HHHhccCCeEEEeCCC-CCH--HHHHHHHHHHHHHcCCCEEEChHHhhcc----cccHHHHHHHHhhCCCeEECCCHHHH
Confidence 45666 8999987422 332 7788888888999999999998643221 112344556776 789999999999
Q ss_pred HHhhCCCC-Cc-cccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEec-------------------CCCe
Q 008161 416 EFLCGIKP-TE-EFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTK-------------------EDDG 474 (575)
Q Consensus 416 ~~L~g~~~-~~-~~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~-------------------~~~~ 474 (575)
..|+|... .. .-|..... -.+...+.++++..+.-..|++| |.. -+++++ +...
T Consensus 374 ~~L~g~~~~~~~GVds~~~~---~~~d~~~aA~~lA~~~~~vVvlk-G~~-D~I~dg~~~~~~~~~~~~~~~~~~~~~~~ 448 (540)
T 3nl6_A 374 LGLAELNKERMKGVDASSGI---SNELLIQATKIVAFKYKTVAVCT-GEF-DFIADGTIEGKYSLSKGTNGTSVEDIPCV 448 (540)
T ss_dssp HHHTTC-----------------CCHHHHHHHHHHHHHTTSEEEEC-SSS-EEEEECCGGGBCCSSSCCSSCCTTSSCEE
T ss_pred HHHhCCCccccccccccccc---CHHHHHHHHHHHHHHhCCEEEEc-CCC-eEEECCCccccccccccccccccCCccEE
Confidence 99998652 00 00000000 00002356667776654566665 432 234444 1111
Q ss_pred eEecccCCCCCCcccCccCchHHHHHHHHHHHHcCCCCCCCch---hHHHHHHHHHHH
Q 008161 475 AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG---YLVRTIKYAIDC 529 (575)
Q Consensus 475 ~v~a~~~~~v~~~vVDTtGAGDaF~AGfl~~L~~g~~~~~d~~---sl~eAl~~A~aa 529 (575)
.+.. -.++ ..-.++|.||++.+.+.+.++.+ . ++.+|+..|+..
T Consensus 449 ~~~~---G~~~-~m~~vtGtGc~Lsg~Iaa~la~~-------~~~~~~~~Aa~~a~~~ 495 (540)
T 3nl6_A 449 AVEA---GPIE-IMGDITASGCSLGSTIACMIGGQ-------PSEGNLFHAVVAGVML 495 (540)
T ss_dssp EEEC---SCCG-GGGSSTTHHHHHHHHHHHHHHTC-------CTTCBHHHHHHHHHHH
T ss_pred EECC---CChh-hccCccCchHHHHHHHHHHHhcC-------cCCCCHHHHHHHHHHH
Confidence 2221 1111 13357999999999888888887 4 466776666543
No 71
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=97.72 E-value=0.00048 Score=74.09 Aligned_cols=159 Identities=9% Similarity=0.075 Sum_probs=94.7
Q ss_pred ecCChHHHHHHHHHHcCCCeEE--EEEeCCChHHHHHHHHHHhCCCccceEEEcC-------------CCCCeEEEEEEc
Q 008161 249 SPGGCTGSAAIALARLGGKVAF--MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDA-------------KRPTAVSQMKIG 313 (575)
Q Consensus 249 ~~GG~a~NvA~aLarLG~~v~l--vg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~-------------~~~T~~~~i~vd 313 (575)
..||.|.-+|..|+.+|.++.+ ++.+|. .+.+.|...+|.+- .+.. +...-+-+|+-.
T Consensus 117 ~mGGnAgimAn~la~lg~~~vl~~~~~~s~-----~~~~l~~~~~i~~p--~~~~g~l~~~~~~ea~~~~~~~iH~I~Ey 189 (467)
T 1gc5_A 117 RIGGQAGIMANLLGGVYRIPTIVHVPQNPK-----LQAELFVDGPIYVP--VFEGNKLKLVHPKDAIAEEEELIHYIYEF 189 (467)
T ss_dssp EEESHHHHHHHHHHHTSCCCEEECCSCCCH-----HHHTTSCSSSEEEE--EECSSCEEEECGGGSCCSCCCCEEEEEEE
T ss_pred ccCccHHHHHHHHHhcCCCEEEEcCCCCCH-----HHHHhcCCCCeeee--eccCCceecccchhhccCCCCcceEEEEc
Confidence 9999999999999999998877 555543 44555542344321 1111 122333344433
Q ss_pred CCC----------CeEEEEecCCccccCC-ccccc---hhhhccCcEEEEeccccccc-----chHH-HH---HHHHHHH
Q 008161 314 KRG----------RLRMTCVKPCAEDALT-KSEIN---IDVLKEAKMFYFSTHSMLER-----NMKS-TT---LQAIKIS 370 (575)
Q Consensus 314 ~~G----------er~~~~~~~ga~~~lt-~e~i~---~~~l~~ad~v~~sg~~l~~~-----~~~e-~~---~~ll~~a 370 (575)
..| .++|++.....+..+. .+++. .+....+|.++++|+.++.. ...+ .+ .+.+...
T Consensus 190 ~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~y~~g~~~~~~l~~~~~~l~~l 269 (467)
T 1gc5_A 190 PRGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLNIL 269 (467)
T ss_dssp CSSCEETTEECSSCEEEEEECCSSTTTTCCCHHHHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHHHH
T ss_pred CCCCeecceeccCCceEEEecCCCCccccccHHHHHHHHhhccCCCEEEEechhcccCccCCchhHHHHHHHHHHHHHhh
Confidence 444 3455544433333332 22221 12224599999999876654 2122 22 2233333
Q ss_pred hhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 371 KQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 371 k~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
...+++|-|...+.. +.+.....+ .+++++|.|-+|++|+..++
T Consensus 270 ~~~~~~iH~E~As~~----~~~l~~~i~-~ilp~vDSlGmNEqELa~l~ 313 (467)
T 1gc5_A 270 NRYNVKSHFEFAYTA----NRRVREALV-ELLPKFTSVGLNEVELASIM 313 (467)
T ss_dssp HHTTCEEEEECCCCC----CHHHHHHHH-HHGGGCSEEEECHHHHHHHH
T ss_pred cCCCCeEEEEECCcc----cHHHHHHHH-hhccccccCccCHHHHHHHH
Confidence 557899999976433 234456667 89999999999999998654
No 72
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=97.63 E-value=0.00037 Score=74.83 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=93.5
Q ss_pred ecCChHHHHHHHHHHcCCCeEE--EEEeCCChHHHHHHHHHHhCCCccceEE----E--c-----CCCCCeEEEEEEcCC
Q 008161 249 SPGGCTGSAAIALARLGGKVAF--MGKLGDDEYGQAMLYYMNVNNVQTRSVR----I--D-----AKRPTAVSQMKIGKR 315 (575)
Q Consensus 249 ~~GG~a~NvA~aLarLG~~v~l--vg~VG~D~~G~~i~~~L~~~GVdt~~v~----~--~-----~~~~T~~~~i~vd~~ 315 (575)
..||.|.-+|..|+.+|.++.+ ++.+|. .+.+.|...+|.+-.+. + . .+...-+-+|+-...
T Consensus 112 ~mGGnA~imAn~la~lg~~~vl~~~~~~s~-----~~~~l~~~~~i~~p~~~~g~l~l~~~~e~~~~~~~~iH~I~Ey~~ 186 (457)
T 1l2l_A 112 RMGGQVGIMANLLGGVYGIPVIAHVPQLSE-----LQASLFLDGPIYVPTFERGELRLIHPREFRKGEEDCIHYIYEFPR 186 (457)
T ss_dssp EEESHHHHHHHHHTTTSCCCEEECCSSCCH-----HHHHTSCSSSEEEEC------CEECGGGC----CCCEEECCEECT
T ss_pred ccCchHHHHHHHHHHcCCCEEEEcCCCCCH-----HHHHhcCCCCeEeeeccCCceeccCchhhccCCCCcceEEEEcCC
Confidence 9999999999999999998876 555543 44555542333211000 0 0 001222223333333
Q ss_pred C----------CeEEEEecCCccccCC-ccccc---hhhhccCcEEEEecccccccch----HHHHHHHHHHHhhcCCEE
Q 008161 316 G----------RLRMTCVKPCAEDALT-KSEIN---IDVLKEAKMFYFSTHSMLERNM----KSTTLQAIKISKQFGGII 377 (575)
Q Consensus 316 G----------er~~~~~~~ga~~~lt-~e~i~---~~~l~~ad~v~~sg~~l~~~~~----~e~~~~ll~~ak~~G~~V 377 (575)
| .++|++.....+..+. .+++. .+....+|.++++|+.++.... .+...+.++.....+++|
T Consensus 187 G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~e~~~~~d~~vlSG~q~l~~~~~~~~~~~~~~~i~~L~~~~~~i 266 (457)
T 1l2l_A 187 NFKVLDFEAPRENRFIGAADDYNPILYVREEWIERFEEIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDLGIRA 266 (457)
T ss_dssp TCEETTEECSSCEEEEEEECSSGGGTCCCHHHHHSHHHHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCeecceecCCCCeEEEEcCCCCCCCcccHHHHHHHHhhccCCCEEEEeccccccccchhhhHHHHHHHHHHhcCCCCeE
Confidence 3 3455544443333332 22221 1222459999999997766411 111223333446788999
Q ss_pred EEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhh
Q 008161 378 FYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 378 v~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~ 419 (575)
-|...+.. +.+.....+ .+++++|.|-+|++|+..++
T Consensus 267 H~E~As~~----~~~l~~~i~-~ilp~vDSlGmNEqELa~l~ 303 (457)
T 1l2l_A 267 HLEFAFTP----DEVVRLEIV-KLLKHFYSVGLNEVELASVV 303 (457)
T ss_dssp EEECCCCS----SHHHHHHHH-HHGGGCSEEEECHHHHHHHH
T ss_pred EEEECCcc----cHHHHHHHH-hhccccccCccCHHHHHHHH
Confidence 99976433 234456667 89999999999999999864
No 73
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=97.58 E-value=0.00081 Score=67.29 Aligned_cols=156 Identities=14% Similarity=0.084 Sum_probs=84.3
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhc-ccCeEEeCCHHHHH
Q 008161 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW-TLADVIEVTKQELE 416 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll-~~aDII~~N~~Ea~ 416 (575)
.+..+.++.++++--. +++...+.+..+.+.+.+.|++++|||...... . ...+...+++ .+.++|.+|..|+.
T Consensus 51 ~e~~~~a~al~iNiGt-l~~~~~~~m~~A~~~A~~~~~PvVLDPVg~gas---~-~R~~~~~~ll~~~~~vIrgN~sEi~ 125 (265)
T 3hpd_A 51 EEMIRLADAVVINIGT-LDSGWRRSMVKATEIANELGKPIVLDPVGAGAT---K-FRTRVSLEILSRGVDVLKGNFGEIS 125 (265)
T ss_dssp HHHHHHCSEEEEECTT-CCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTB---H-HHHHHHHHHHHHCCSEEEEEHHHHH
T ss_pred HHHHHHCCeEEEECCC-CChHHHHHHHHHHHHHHHcCCCEEEcCCCCCCc---H-HHHHHHHHHHhcCCcEEcCCHHHHH
Confidence 3556678888887322 344456777888889999999999998643211 1 0112223332 36899999999999
Q ss_pred HhhCCCCCcc-ccccccccccccCCcHHHHHHHHhcCCcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCch
Q 008161 417 FLCGIKPTEE-FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 417 ~L~g~~~~~~-~d~~~~~~~~~~~~~~e~~~~L~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAG 495 (575)
.|+|...... -|..... .+...+.++.+.++.-..|++| |+. -++.+++..+.+.. - .+..-..+|.|
T Consensus 126 ~L~g~~~~~~gvds~~~~----~~d~~~~a~~lA~~~~~vVvlk-G~~-d~I~dg~~~~~~~~---G--~~~m~~vtGtG 194 (265)
T 3hpd_A 126 ALLGEEGKTRGVDSLEYG----EEEAKKLTMNAAREFNTTVAVT-GAV-DYVSDGRRTFAVYN---G--HELLGRVTGTG 194 (265)
T ss_dssp HHHHHHC----------C----HHHHHHHHHHHHHHTTSEEEEE-SSS-EEEECSSCEEEECC---C--CGGGGGSTTHH
T ss_pred HHhcccCCCCCccCcccc----HHHHHHHHHHHHHHhCCEEEEe-CCC-eEEEcCCEEEEECC---C--ChHhhcCCccc
Confidence 9987532110 0000000 0001245566655543466665 543 34444443222221 1 11123348999
Q ss_pred HHHHHHHHHHHHcC
Q 008161 496 DGIVAGIMRMLTVQ 509 (575)
Q Consensus 496 DaF~AGfl~~L~~g 509 (575)
|++.+.+.+.++.+
T Consensus 195 c~Lsg~iaa~lA~~ 208 (265)
T 3hpd_A 195 CMVAALTGAFVAVT 208 (265)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhcC
Confidence 98755554444555
No 74
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=96.37 E-value=0.023 Score=61.41 Aligned_cols=171 Identities=12% Similarity=0.033 Sum_probs=94.0
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeCCHHHHHHhhCC
Q 008161 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~N~~Ea~~L~g~ 421 (575)
..++.+.++.-...++. + +..+++ .+ ++++|.. -++. . .+..+++...||+||..|+..|+|.
T Consensus 291 ~~~~a~~iGPGlG~~~~--~-l~~~l~----~~-p~VlDAD---aL~~-----~-~~~~~~~~~~VlTPh~~E~~rL~g~ 353 (475)
T 3k5w_A 291 NLLSAFALGMGLENIPK--D-FNRWLE----LA-PCVLDAG---VFYH-----K-EILQALEKEAVLTPHPKEFLSLLNL 353 (475)
T ss_dssp SSCSEEEECTTCSSCCT--T-HHHHHH----HS-CEEEEGG---GGGS-----G-GGGTTTTSSEEEECCHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCHH--H-HHHHHh----cC-CEEEECc---ccCC-----c-hhhhccCCCEEECCCHHHHHHHhCC
Confidence 46788888732111221 2 444442 24 9999964 2221 0 1123345668999999999999976
Q ss_pred -----CCCccccccccccccccCCcHHHHHHHHhcC-CcEEEEecCCcceEEEecCCCeeEecccCCCCCCcccCccCch
Q 008161 422 -----KPTEEFDTKNNARSKFVHYEPEVIAPLWHEN-LKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 422 -----~~~~~~d~~~~~~~~~~~~~~e~~~~L~~~g-~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDTtGAG 495 (575)
+..+.. .+ ..+.++++.++. ..+|++| |..- ++++.+ ..++... ..+ ...|.|.|
T Consensus 354 ~~~~v~~~~~~------~d-----~~~aa~~la~~~g~~~VvlK-G~~~-vI~~~~-~~~~~~~---g~~--~mat~GtG 414 (475)
T 3k5w_A 354 VGINISMLELL------DN-----KLEIARDFSQKYPKVVLLLK-GANT-LIAHQG-QVFINIL---GSV--ALAKAGSG 414 (475)
T ss_dssp TSCCCCTTSGG------GS-----CC--CHHHHHHCTTEEEEEC-SSSE-EEEETT-EEEEECC---CCG--GGCSTTHH
T ss_pred ccCCCCcchhH------HH-----HHHHHHHHHHHcCCeEEEEe-CCCC-EEECCC-EEEEECC---CCC--CCCCCCHH
Confidence 221110 00 124556666654 4455555 4432 344432 2222211 111 35689999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHccccccCCCCCCHHHHHhhhCCC
Q 008161 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKGGMEEEVEPD 556 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~~~pt~eeve~~l~~~ 556 (575)
|++.+.+.+.|++| .++.+|+..|...-+.+-.......++ ...+|-+.|...
T Consensus 415 dvLsg~Iaa~lA~g-------~~~~~Aa~~a~~lhg~ag~~a~~~~~~-~a~dl~~~l~~~ 467 (475)
T 3k5w_A 415 DVLAGLILSLLSQN-------YTPLDAAINASLAHALASLEFKNNYAL-TPLDLIEKIKQL 467 (475)
T ss_dssp HHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHGGGGCSSTTCC-CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHhccCCCc-CHHHHHHHhhhh
Confidence 99999999999999 888888887765555443332111233 556665555433
No 75
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=54.31 E-value=2.6 Score=25.79 Aligned_cols=9 Identities=56% Similarity=0.955 Sum_probs=3.5
Q ss_pred hcccccccc
Q 008161 145 RRRRKTTKK 153 (575)
Q Consensus 145 ~~~~~~~~~ 153 (575)
|||||+|.|
T Consensus 5 rrrrkrkre 13 (28)
T 3ukx_C 5 RRRRKRKRE 13 (28)
T ss_dssp -CCCCCCCC
T ss_pred HHHHHhhcc
Confidence 344444443
No 76
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=40.41 E-value=1.6e+02 Score=26.02 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=38.7
Q ss_pred EEEEec-ccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHHHHHHHHhcccCeEEeC-----CHHHHHHhh
Q 008161 346 MFYFST-HSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEV-----TKQELEFLC 419 (575)
Q Consensus 346 ~v~~sg-~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDII~~-----N~~Ea~~L~ 419 (575)
.|.++| -+++. .+.+.++++.+++.|..+.+..|.... .+.+..++++.|.+.+ +.+....+.
T Consensus 6 ~v~~tGGEPll~---~~~~~~l~~~~~~~g~~~~l~TNG~l~--------~~~~~~l~~~~d~v~isld~~~~~~~~~~~ 74 (182)
T 3can_A 6 GVTFCGGEPLLH---PEFLIDILKRCGQQGIHRAVDTTLLAR--------KETVDEVMRNCELLLIDLKSMDSTVHQTFC 74 (182)
T ss_dssp CEEECSSTGGGS---HHHHHHHHHHHHHTTCCEEEECTTCCC--------HHHHHHHHHTCSEEEEECCCSCHHHHHHHH
T ss_pred EEEEEcccccCC---HHHHHHHHHHHHHCCCcEEEECCCCCC--------HHHHHHHHhhCCEEEEECCCCCHHHHHHHh
Confidence 345554 34432 344568899999999999999875421 2344455555666554 444455566
Q ss_pred CC
Q 008161 420 GI 421 (575)
Q Consensus 420 g~ 421 (575)
|.
T Consensus 75 g~ 76 (182)
T 3can_A 75 DV 76 (182)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 77
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=25.63 E-value=1.6e+02 Score=31.64 Aligned_cols=113 Identities=9% Similarity=0.058 Sum_probs=60.8
Q ss_pred CceEEecCChHHHHHHHHHHcC-----CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCe
Q 008161 244 EKFIRSPGGCTGSAAIALARLG-----GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRL 318 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG-----~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger 318 (575)
..+...+|+.+.+.|..|+.++ .+..++.. +++ +.+...+.-.|+...++.. .++.+
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpR--n~H--KSv~kAliL~Gl~Pv~V~p-----------~~d~~--- 196 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR--IDQ--KSCFKSMITAGFEPVVIEN-----------VLEGD--- 196 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEEC--CCC--HHHHHHHHHTTCEEEEECE-----------EEETT---
T ss_pred CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEec--chH--HHHHHHHHHcCCeEEEEee-----------eeccc---
Confidence 4577888888888888877764 35555543 222 4566777777776544421 11111
Q ss_pred EEEEecCCccccCCccccchhhhc----cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008161 319 RMTCVKPCAEDALTKSEINIDVLK----EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 319 ~~~~~~~ga~~~lt~e~i~~~~l~----~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~ 384 (575)
.+ .++++.+. ..++ ++-.+++...+-..+...+.+.++.+.|+++|+++++|--+.
T Consensus 197 ~~---------~id~e~le-~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhG 256 (501)
T 3hl2_A 197 EL---------RTDLKAVE-AKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYG 256 (501)
T ss_dssp EE---------EECHHHHH-HHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTC
T ss_pred cc---------CCCHHHHH-HHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcch
Confidence 11 12233332 2222 122233222211112233456788899999999999995443
No 78
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=23.42 E-value=2.3e+02 Score=29.87 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=70.3
Q ss_pred CceEEecCChHHHHHHHHHHcC-----CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCe
Q 008161 244 EKFIRSPGGCTGSAAIALARLG-----GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRL 318 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG-----~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger 318 (575)
..+....|+++.+.+.+|+... .+..++. .+. -..+...+.-.|+...+|... ..+ +
T Consensus 117 ~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~--r~a--HkSv~kAl~l~Gl~p~~v~~~----------~~~---~- 178 (450)
T 3bc8_A 117 ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP--RID--QKSCFKSMVTAGFEPVVIENV----------LEG---D- 178 (450)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE--CCC--CHHHHHHHHHTTCEEEEECCE----------EET---T-
T ss_pred ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE--CCc--HHHHHHHHHHcCCeeEEEEee----------ecC---c-
Confidence 3456777886555555554432 3444444 333 245677777788876554211 111 1
Q ss_pred EEEEecCCccccCCccccchhhhc----cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccChhHH
Q 008161 319 RMTCVKPCAEDALTKSEINIDVLK----EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEET 394 (575)
Q Consensus 319 ~~~~~~~ga~~~lt~e~i~~~~l~----~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~~~~l~~~~~~~ 394 (575)
.. .++++.+. ..+. +...+++....-..+...+.+.++.+.|+++|+++.+|--+..-+ ...
T Consensus 179 ~~---------~id~~~le-~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~----~~~ 244 (450)
T 3bc8_A 179 EL---------RTDLKAVE-AKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS----SKC 244 (450)
T ss_dssp EE---------ECCHHHHH-HHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC----HHH
T ss_pred cC---------CcCHHHHH-HHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhh----hhh
Confidence 11 23334342 2221 122333332211122223456788899999999999995433211 123
Q ss_pred HHHHHHhc--ccCeEEeCCH
Q 008161 395 KMFIQQAW--TLADVIEVTK 412 (575)
Q Consensus 395 ~~~l~~ll--~~aDII~~N~ 412 (575)
.++....+ ..+|.+..+-
T Consensus 245 ~~l~~~a~~~~~AD~~v~S~ 264 (450)
T 3bc8_A 245 MHLIQQGARVGRIDAFVQSL 264 (450)
T ss_dssp HHHHHHHHHHSCCCEEEEEH
T ss_pred HhHHHHHhcccCCCEEEECC
Confidence 34444555 5789988774
No 79
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=21.50 E-value=1.2e+02 Score=30.35 Aligned_cols=20 Identities=15% Similarity=0.090 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcCCEEEEcCC
Q 008161 363 TLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 363 ~~~ll~~ak~~G~~Vv~D~~ 382 (575)
+.++.+.|+++|+.+++|-.
T Consensus 182 l~~i~~l~~~~~~~li~Dea 201 (423)
T 3lvm_A 182 IAAIGEMCRARGIIYHVDAT 201 (423)
T ss_dssp HHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEhh
Confidence 56678888999999999964
No 80
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=21.37 E-value=2e+02 Score=28.12 Aligned_cols=107 Identities=9% Similarity=0.117 Sum_probs=55.0
Q ss_pred eEEecCChHHHHHHHHHHcC-CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCCeEEEEEEcCCCCeEEEEec
Q 008161 246 FIRSPGGCTGSAAIALARLG-GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVK 324 (575)
Q Consensus 246 ~~~~~GG~a~NvA~aLarLG-~~v~lvg~VG~D~~G~~i~~~L~~~GVdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~ 324 (575)
+....||..++.+...+.+. .+..++.. ...+|..+...+...|+.+..+.. +.++
T Consensus 77 v~~~~gg~~al~~~~~~~~~~gd~vl~~~--~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~-------- 133 (393)
T 3kgw_A 77 LVVSGSGHCAMETALFNLLEPGDSFLTGT--NGIWGMRAAEIADRIGARVHQMIK-------------KPGE-------- 133 (393)
T ss_dssp EEESCCTTTHHHHHHHHHCCTTCEEEEEE--SSHHHHHHHHHHHHTTCEEEEEEC-------------CTTC--------
T ss_pred EEEeCCcHHHHHHHHHhcCCCCCEEEEEe--CCchhHHHHHHHHHcCCceEEEeC-------------CCCC--------
Confidence 44567777776554444442 33344443 234655556666767765433221 1111
Q ss_pred CCccccCCccccchhhhc--cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCC
Q 008161 325 PCAEDALTKSEINIDVLK--EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 325 ~ga~~~lt~e~i~~~~l~--~ad~v~~sg~~l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~ 382 (575)
.++.+.+. ..+. +.++|+++.......... .+.++.+.|+++|+.+++|-.
T Consensus 134 -----~~d~~~l~-~~i~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~ 186 (393)
T 3kgw_A 134 -----HYTLQEVE-EGLAQHKPVLLFLVHGESSTGVVQ-PLDGFGELCHRYQCLLLVDSV 186 (393)
T ss_dssp -----CCCHHHHH-HHHHHHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECT
T ss_pred -----CCCHHHHH-HHHhhCCCcEEEEeccCCcchhhc-cHHHHHHHHHHcCCEEEEECC
Confidence 12334442 2232 567777774210000000 145677888999999999954
No 81
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=21.21 E-value=4.9e+02 Score=25.15 Aligned_cols=41 Identities=5% Similarity=-0.020 Sum_probs=27.1
Q ss_pred cCcEEEEeccc--ccccchHHHHHHHHHHHhhcCCEEEEcCCC
Q 008161 343 EAKMFYFSTHS--MLERNMKSTTLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 343 ~ad~v~~sg~~--l~~~~~~e~~~~ll~~ak~~G~~Vv~D~~~ 383 (575)
+.+++++.... .-...+.+.+.++++.|+++|+.+++|-.+
T Consensus 150 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~ 192 (377)
T 3fdb_A 150 GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIH 192 (377)
T ss_dssp TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 45667766421 001123566888999999999999999643
Done!