Your job contains 1 sequence.
>008162
MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT
FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ
ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE
NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK
NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI
VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP
PAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPL
PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA
LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA
KVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008162
(575 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 1840 7.7e-190 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 1463 2.0e-184 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 1677 1.4e-172 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 1063 7.4e-137 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 977 8.5e-119 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 978 4.7e-118 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 978 4.7e-118 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 976 9.7e-118 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 976 9.7e-118 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 976 9.7e-118 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 976 9.7e-118 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 976 9.7e-118 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 976 9.7e-118 2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 976 9.7e-118 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 973 9.7e-118 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 972 1.2e-117 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 972 1.2e-117 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 972 1.2e-117 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 972 1.2e-117 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 972 1.2e-117 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 971 1.6e-117 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 971 1.6e-117 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 968 6.8e-117 2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 970 1.1e-116 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 961 1.8e-116 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 963 2.9e-116 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 962 4.7e-116 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 948 8.7e-115 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 948 9.9e-114 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 922 8.9e-113 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 946 3.0e-112 2
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 931 4.9e-112 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 917 1.0e-111 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 924 2.7e-111 2
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 924 2.7e-111 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 934 1.5e-110 2
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 917 1.5e-110 2
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 934 3.9e-110 2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 925 8.0e-110 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 781 3.5e-109 3
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 924 4.4e-109 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 916 1.5e-108 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 905 7.2e-107 2
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 858 1.7e-105 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 902 5.8e-105 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 921 9.4e-105 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 843 1.1e-103 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 927 1.4e-103 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 880 2.2e-103 2
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 878 2.5e-102 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 808 1.1e-101 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 721 1.2e-100 3
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 906 5.3e-100 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 742 2.7e-90 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 876 1.1e-87 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 809 1.4e-80 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 602 3.2e-79 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 783 7.9e-78 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 783 7.9e-78 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 755 7.3e-75 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 747 5.1e-74 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 720 3.7e-71 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 565 2.7e-70 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 565 2.7e-70 2
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 711 3.3e-70 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 692 3.7e-70 2
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 707 8.9e-70 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 707 8.9e-70 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 698 8.0e-69 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 428 2.9e-60 2
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 600 1.9e-58 1
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 549 9.8e-58 2
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 545 1.3e-52 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 475 3.4e-45 1
UNIPROTKB|F1M0P4 - symbol:F1M0P4 "Uncharacterized protein... 311 5.4e-45 2
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 451 1.2e-42 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 396 9.4e-40 2
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 377 8.3e-35 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 375 1.3e-34 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 375 1.3e-34 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 375 1.3e-34 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 374 1.7e-34 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 368 7.4e-34 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 353 3.8e-32 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 350 8.7e-32 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 272 4.2e-30 2
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 317 5.3e-28 1
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 264 4.1e-26 2
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 229 4.2e-25 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 221 1.1e-24 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 221 1.9e-24 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 221 1.9e-24 2
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 206 2.2e-24 2
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 210 3.0e-24 2
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 215 3.2e-24 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 215 3.2e-24 2
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 221 4.0e-24 2
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 221 4.1e-24 2
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 216 4.4e-24 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 219 5.4e-24 2
WARNING: Descriptions of 1417 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 1840 (652.8 bits), Expect = 7.7e-190, P = 7.7e-190
Identities = 372/576 (64%), Positives = 438/576 (76%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RAL+ LNF LN ++IR+MYS RDPS+RKSG GNIFIKNLDKSIDHKALH+TFS+FG
Sbjct: 99 ASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP 158
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SGQSKG+GFVQ++ E+AQ AIDKLNGML+NDKQV+VG F+ K +R+
Sbjct: 159 ILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG 218
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KF NV+VKNL ES +DE+L K+FGE+G TS V+MRDG+GKSK FGFVNFEN+DDAA
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 278
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ALNGK FDD+EW+VGKAQKKSERE ELK +FEQ++KE DK QG NLY+KNL +S+
Sbjct: 279 RAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESV 338
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KL+E F+ FGTITSCKVMRDPSG+S+GSGFVAFSTPEEA+RA+ EMNGKMIV+KPLY
Sbjct: 339 TDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLY 398
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYGXXXXXXXXX 366
VA+AQRKE+R+ARLQAQFSQMRPV M +GQQ YG
Sbjct: 399 VALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPQ 458
Query: 367 XXGFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXX------XXXXXTQQPL 420
GFGYQQQLVPGMRP G+PMPNFF QQP
Sbjct: 459 P-GFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPS 517
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM--GAGIPRRDASVGQPMPI 478
P+M QM PRG YRYP R++ P +ML VP D+ G G+ RD+ QP+PI
Sbjct: 518 PMMQQQMHPRGRMYRYPQ-RDVNTMPGP--TQNMLSVPYDVSSGGGVHHRDSPTSQPVPI 574
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
AL+T LANA+PEQQRT+LGE+LYPLVEQLE ++AAKVTGMLLEMDQTEVLHLLESPEAL
Sbjct: 575 VALATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEAL 634
Query: 539 KAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 574
KAKV EAM+VLRSVAQQQA ADQLASLSL +N+V
Sbjct: 635 KAKVTEAMDVLRSVAQQQAGGAADQLASLSLGDNIV 670
Score = 451 (163.8 bits), Expect = 2.1e-42, P = 2.1e-42
Identities = 101/291 (34%), Positives = 165/291 (56%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
+ GT ++++ +LD ++ L + F+ G ++S ++ D + +S G+G+V + + A
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
A+++LN M +N + + V + +R K+ N+F+KNLD+S + L + F +
Sbjct: 101 RALNELNFMALNGRAIRVMYSVRDPSLR----KSGVGNIFIKNLDKSIDHKALHETFSAF 156
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S V D G+SK +GFV ++ + A A++ LNG +D++ YVG K +R+
Sbjct: 157 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDP 216
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
G E V KF N+Y+KNL +S+ DE+L ++F EFG TSC +MRD G SK
Sbjct: 217 S--G-------EKV-KFT--NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK 264
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G GFV F ++A+RA+ +NGK K +V AQ+K ER L+ +F Q
Sbjct: 265 GFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
Score = 442 (160.7 bits), Expect = 2.3e-41, P = 2.3e-41
Identities = 100/235 (42%), Positives = 138/235 (58%)
Query: 6 SAARALDVLNFTPLNNKSIRI-MYSH---RDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
+A A+D LN LN+K + + + H RDPS K N+++KNL +S+ + L+ F
Sbjct: 185 AAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVF 244
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
FG SC I DG G+SKGFGFV FEN + A A+D LNG +DK+ FVG +K E
Sbjct: 245 GEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSE 304
Query: 122 RETVAIKTKF-------------NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
RET +K KF +N++VKNLDES TD+ L++ F +GTITS VMRD
Sbjct: 305 RET-ELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS 363
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
G S+ GFV F ++A +A+ +NGK + YV AQ+K +R+ L+ QF Q
Sbjct: 364 GVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQ 418
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 1463 (520.1 bits), Expect = 2.0e-184, Sum P(2) = 2.0e-184
Identities = 291/459 (63%), Positives = 345/459 (75%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA+ LN+ PL K IR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFSSFGN
Sbjct: 90 AARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTA 209
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVVM+DG+GKSK FGFVNFENADDAA
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 269
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ +KE DKFQ NLY+KNL SI
Sbjct: 270 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 329
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+TPEEA+ A+++++GKMI SKPLY
Sbjct: 330 SDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 389
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYGXXXXXXXXX 366
VA+AQRKE+RR RLQAQFSQ+RPVAM +GQQ YG
Sbjct: 390 VAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPP 449
Query: 367 XXGFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPIMPHQ 426
G+GYQQQLVPGMRP G P+P+FF +QQ P+M Q
Sbjct: 450 QPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQH--SQQQNPMMQQQ 507
Query: 427 MPPRGHAYRYPLGRNMQ-DFP-FDMGAGSMLPVPVDMGA 463
M PRG +RYP GR D P +DMG +P+ +GA
Sbjct: 508 MHPRGRMFRYPQGRGGSGDVPPYDMGNN----MPLTIGA 542
Score = 451 (163.8 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 100/289 (34%), Positives = 157/289 (54%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNA 97
G ++++ +LD ++ L D F G +++ ++ D + +S G+G+V F N + A A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I +LN + + K + V + R+ ++ N+F+KNLDES + L F +G
Sbjct: 94 IQELNYIPLYGKPIRVMY----SHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V D G+SK +GFV + N + A KA+E LNG +D++ YVG ++ ER+
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDS-- 207
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
T +K + N+Y+KNL +S D+ LK F E+G ITS VM+D G SKG
Sbjct: 208 ----------TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGF 257
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV F ++A+RA+ +NG K YV AQ+K ER L+ ++ Q
Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Score = 417 (151.9 bits), Expect = 2.1e-73, Sum P(2) = 2.1e-73
Identities = 93/234 (39%), Positives = 136/234 (58%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
SA +A++ LN LN+K + + RD + K+ N+++KNL +S L + F
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF 235
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
+G I S + DG G+SKGFGFV FEN + A A++ LNG +DK+ +VG +K E
Sbjct: 236 GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSE 295
Query: 122 RET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
RET A K + +N++VKNLD S +DE LK+IF +GT+TS+ VMRD +G
Sbjct: 296 RETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNG 355
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
SK GFV F ++A +A+ L+GK + + YV AQ+K +R L+ QF Q
Sbjct: 356 TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ 409
Score = 348 (127.6 bits), Expect = 2.0e-184, Sum P(2) = 2.0e-184
Identities = 84/145 (57%), Positives = 101/145 (69%)
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
Q P +P GR M +P G +P P DMG +P + I AL++ L
Sbjct: 499 QQNPMMQQQMHPRGR-MFRYPQGRGGSGDVP-PYDMGNNMP---------LTIGALASNL 547
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 548 SNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 607
Query: 546 MEVLRSVAQQQANNPADQLASLSLN 570
M+VLRSVA A +QLASL+L+
Sbjct: 608 MDVLRSVA---AGGATEQLASLNLS 629
Score = 271 (100.5 bits), Expect = 7.6e-54, Sum P(2) = 7.6e-54
Identities = 70/194 (36%), Positives = 106/194 (54%)
Query: 126 AIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
A T+F N ++V +LD + TD L FG+ GT+ + V RD +S +G+VNF N
Sbjct: 28 ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP 87
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DAA+A++ LN Y+ K ++ + +V + N++IKNL
Sbjct: 88 QDAARAIQELN---------YIPLYGKP------IRVMYSHR-DPSVRRSGAGNIFIKNL 131
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+SID + L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 191
Query: 303 KPLYVAVAQRKEER 316
K +YV R++ER
Sbjct: 192 KQVYVGPFLRRQER 205
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 1677 (595.4 bits), Expect = 1.4e-172, P = 1.4e-172
Identities = 350/578 (60%), Positives = 417/578 (72%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A+ LN++ LN K IRI YS RD S R+SG GN+F+KNLDKS+D+K LH+ FS G
Sbjct: 100 AEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT 159
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+ATD GQS+G+GFVQF+ ++SA+NAI+KLNG ++NDKQ+FVG FLRK+ERE+ A
Sbjct: 160 IVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAA 219
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KF NV+VKNL E+TTD++LK FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAA
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAA 279
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ + +KF GLNLY+KNL D++
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTV 339
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS EASR L EMNGKM+ KPLY
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLY 399
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYGXXXXXXXXX 366
VA+AQRKEERRA+LQAQFSQMRP A LGQQ YG
Sbjct: 400 VALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPH 458
Query: 367 XXGFGYQQQLVPGMRPA--GAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPIMP 424
GFGYQ QLVPGMRPA G PM QQP+P M
Sbjct: 459 QPGFGYQPQLVPGMRPAFFGGPMMQ-----PGQQGPRPGGRRSGDGPMRHQHQQPMPYMQ 513
Query: 425 HQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
QM PRG YRYP G RNM D P G M+PV DM +P QPM L+T
Sbjct: 514 PQMMPRGRGYRYPSGGRNMPDGPMP---GGMVPVAYDMNV-MP-----YSQPMSAGQLAT 564
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGMLLEMDQTEVLHLLESPEAL AKV+
Sbjct: 565 SLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVS 624
Query: 544 EAMEVLRSVAQ--------QQANNPADQLASLSLNENL 573
EA++VLR+V Q ++ +P+D LASLS+N++L
Sbjct: 625 EALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSINDHL 662
Score = 463 (168.0 bits), Expect = 6.5e-44, P = 6.5e-44
Identities = 100/286 (34%), Positives = 162/286 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ ++S ++ D + S G+G+V + N + A+ A+ K
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + + R++ A ++ N+FVKNLD+S ++ L + F GTI S
Sbjct: 107 LNYSYLNGKMIRITY----SSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVS 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+S+ +GFV F+ D A A+E LNGK +D++ +VG +K ERE
Sbjct: 163 CKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES----- 217
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
DK + N+Y+KNL ++ D++LK F ++G+I+S VMRD G S+ GFV
Sbjct: 218 -------AADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFV 270
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F PE+A+RA+ +NGK K YV AQ+K ER L ++ Q
Sbjct: 271 NFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 316
Score = 402 (146.6 bits), Expect = 6.5e-37, P = 6.5e-37
Identities = 92/234 (39%), Positives = 133/234 (56%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
SA A++ LN LN+K I + R+ + K N+++KNL ++ L TF
Sbjct: 186 SAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTF 245
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
+G+I S + DG G+S+ FGFV FEN E A A++ LNG +DK+ +VG +K E
Sbjct: 246 GQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSE 305
Query: 122 RETVAIK----------TKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
RE + KF+ N++VKNLD++ TDE L+++F E+GTITS VMRD G
Sbjct: 306 RELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG 365
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
SK GFV F A +A++ + +NGK + YV AQ+K ER +L+ QF Q
Sbjct: 366 TSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQ 419
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 1063 (379.3 bits), Expect = 7.4e-137, Sum P(2) = 7.4e-137
Identities = 209/326 (64%), Positives = 259/326 (79%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA++ LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSF
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSF 159
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
G ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QER
Sbjct: 160 GTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERAR 219
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ +F NV+VKNL + +++L+K FG++G I+SAVVMRD G S+CFGFVNFE
Sbjct: 220 DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECT 279
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ AA AVE +NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL
Sbjct: 280 EAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMR 328
KPLY+A+AQRKE+RRA LQA FSQ+R
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR 425
Score = 408 (148.7 bits), Expect = 9.8e-67, Sum P(2) = 9.8e-67
Identities = 95/287 (33%), Positives = 155/287 (54%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D F N++S ++ D + +S G+ ++ F N A A++ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N + D+ + + L ++ T + K N+F+KNLD S ++ L + F +GTI S
Sbjct: 110 NYTPLFDRPIRI--MLSNRDPST-RLSGK-GNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ ER ++
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD----- 220
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
E + N+Y+KNL I +++L++ F +FG I+S VMRD SG S+ GFV
Sbjct: 221 -----ENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F E A+ A+ +MNG + LYV AQ+K ER L+ +F Q R
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Score = 298 (110.0 bits), Expect = 7.4e-137, Sum P(2) = 7.4e-137
Identities = 77/187 (41%), Positives = 104/187 (55%)
Query: 369 GFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQ--QPLPIMPHQ 426
G+G+Q Q +PGMRP P NF Q Q +M H+
Sbjct: 464 GYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLM-HR 521
Query: 427 MPPRGHAYRYPL--GRNMQDFPFDMGA-GSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
P G Y GRN D G ++P+P+D + I + A + +PI+ L++
Sbjct: 522 NPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPID-ASSISHQKAPL---LPISKLTS 577
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
+LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+
Sbjct: 578 SLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVS 637
Query: 544 EAMEVLR 550
EA++VLR
Sbjct: 638 EALDVLR 644
Score = 250 (93.1 bits), Expect = 3.2e-45, Sum P(2) = 3.2e-45
Identities = 67/193 (34%), Positives = 100/193 (51%)
Query: 125 VAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N +
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DA +A+EALN DR + + + KG N++IKNL
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNLD 144
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++ K
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Query: 304 PLYVAVAQRKEER 316
++V R++ER
Sbjct: 205 QVFVGHFIRRQER 217
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 977 (349.0 bits), Expect = 8.5e-119, Sum P(2) = 8.5e-119
Identities = 188/322 (58%), Positives = 250/322 (77%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE +
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ K F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 305 LYVAVAQRKEERRARLQAQFSQ 326
LYVA+AQRKEER+A L Q+ Q
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQ 320
Score = 420 (152.9 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 97/235 (41%), Positives = 142/235 (60%)
Query: 94 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L F
Sbjct: 1 AERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 56
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ER
Sbjct: 57 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 115
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
E EL + KE N+YIKN G+ +DDE+LKELF +FG S KVM D SG
Sbjct: 116 EAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 165
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 166 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 220
Score = 409 (149.0 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 89/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L + F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 246
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 247 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 305
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 306 RKEERQAHLTNQYMQRM 322
Score = 213 (80.0 bits), Expect = 8.5e-119, Sum P(2) = 8.5e-119
Identities = 45/93 (48%), Positives = 68/93 (73%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 478 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 534
Query: 533 ESPEALKAKVAEAMEVLRS-----VAQQQANNP 560
ESPE+L++KV EA+ VL++ AQ+ NNP
Sbjct: 535 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 567
Score = 195 (73.7 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 129
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 978 (349.3 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 188/324 (58%), Positives = 251/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 485 (175.8 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 112/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 409 (149.0 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 89/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L + F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 205 (77.2 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 597
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 978 (349.3 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 188/324 (58%), Positives = 251/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 485 (175.8 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 112/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 409 (149.0 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 89/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L + F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 205 (77.2 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 597
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 976 (348.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 188/324 (58%), Positives = 250/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 413 (150.4 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 976 (348.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 188/324 (58%), Positives = 250/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 413 (150.4 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 976 (348.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 188/324 (58%), Positives = 250/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 413 (150.4 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 976 (348.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 188/324 (58%), Positives = 250/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 413 (150.4 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 976 (348.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 188/324 (58%), Positives = 250/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 413 (150.4 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 552 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 608
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 609 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 637
Score = 113 (44.8 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 976 (348.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 188/324 (58%), Positives = 250/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 478 (173.3 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 111/298 (37%), Positives = 172/298 (57%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 413 (150.4 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 109 (43.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 976 (348.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 188/324 (58%), Positives = 250/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 18 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 77
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 78 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 136
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 137 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 196
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 197 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 256
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 257 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 315
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 316 KPLYVALAQRKEERQAHLTNQYMQ 339
Score = 442 (160.7 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 100/250 (40%), Positives = 150/250 (60%)
Query: 79 QSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKN 138
+S G+ +V F+ A+ A+D +N +I K V + +R+ K+ N+F+KN
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKN 60
Query: 139 LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198
LD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 119
Query: 199 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF 258
DR+ +VG+ + + ERE EL + KE N+YIKN G+ +DDE+LK+LF +F
Sbjct: 120 DRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKF 169
Query: 259 GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318
G S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+
Sbjct: 170 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 229
Query: 319 RLQAQFSQMR 328
L+ +F QM+
Sbjct: 230 ELKRKFEQMK 239
Score = 413 (150.4 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 147 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 265
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 266 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 324
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 325 RKEERQAHLTNQYMQRM 341
Score = 204 (76.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 496 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 552
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 553 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 581
Score = 195 (73.7 bits), Expect = 8.6e-29, Sum P(2) = 8.6e-29
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 114 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 148
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 973 (347.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 190/324 (58%), Positives = 249/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 494 (179.0 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 111/288 (38%), Positives = 173/288 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 626
Query: 565 AS 566
A+
Sbjct: 627 AA 628
Score = 199 (75.1 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 972 (347.2 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 190/324 (58%), Positives = 249/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 496 (179.7 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 111/288 (38%), Positives = 173/288 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 523 PYKYASSIRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 580
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 581 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 640
Query: 565 AS 566
A+
Sbjct: 641 AA 642
Score = 199 (75.1 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 972 (347.2 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 190/324 (58%), Positives = 248/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 494 (179.0 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 111/288 (38%), Positives = 173/288 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 626
Query: 565 AS 566
A+
Sbjct: 627 AA 628
Score = 199 (75.1 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 972 (347.2 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 190/324 (58%), Positives = 249/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 490 (177.5 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 110/288 (38%), Positives = 173/288 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 493 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 550
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 551 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 610
Query: 565 AS 566
A+
Sbjct: 611 AA 612
Score = 199 (75.1 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 972 (347.2 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 190/324 (58%), Positives = 249/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 490 (177.5 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 110/288 (38%), Positives = 173/288 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 522 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 579
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 580 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 639
Query: 565 AS 566
A+
Sbjct: 640 AA 641
Score = 199 (75.1 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 972 (347.2 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 190/323 (58%), Positives = 248/323 (76%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+FG
Sbjct: 104 TAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 163
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 124
NILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 164 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 222
Query: 125 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E +
Sbjct: 223 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 282
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 283 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 342
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SK
Sbjct: 343 DTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 401
Query: 304 PLYVAVAQRKEERRARLQAQFSQ 326
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 402 PLYVALAQRKEERKAHLTNQYMQ 424
Score = 434 (157.8 bits), Expect = 7.5e-60, Sum P(2) = 7.5e-60
Identities = 99/236 (41%), Positives = 146/236 (61%)
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
+A+ A+D +N +I K + + +R+ K+ NVF+KNLD+S ++ L F
Sbjct: 104 TAERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 159
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+G I S V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + E
Sbjct: 160 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 218
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
RE EL + KE N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG
Sbjct: 219 REAELGAK----AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG 268
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SKG GFV++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 269 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 324
Score = 207 (77.9 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 578 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 635
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 636 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 695
Query: 565 AS 566
A+
Sbjct: 696 AA 697
Score = 185 (70.2 bits), Expect = 7.9e-28, Sum P(2) = 7.9e-28
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 198
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 199 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 233
Score = 48 (22.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 283 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+T A RAL MN +I KP+ + +QR R
Sbjct: 100 ATGGTAERALDTMNFDVIKGKPIRIMWSQRDPSLR 134
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 971 (346.9 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 189/324 (58%), Positives = 249/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 479 (173.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 108/288 (37%), Positives = 172/288 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ E+A++A+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 626
Query: 565 AS 566
A+
Sbjct: 627 AA 628
Score = 200 (75.5 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 971 (346.9 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 189/324 (58%), Positives = 249/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 479 (173.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 108/288 (37%), Positives = 172/288 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ E+A++A+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 538 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 595
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 596 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 655
Query: 565 AS 566
A+
Sbjct: 656 AA 657
Score = 200 (75.5 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 968 (345.8 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
Identities = 186/324 (57%), Positives = 250/324 (77%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK+IF +YG S VM D GKSK FGFV+FE
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D +DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L +Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTSQYMQ 384
Score = 474 (171.9 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 109/298 (36%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE E+ + KE N+YIKN G+ +DDEKLKE+F ++G S +VM D
Sbjct: 177 KEREAEMGAR----AKEFT------NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A RA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMK 284
Score = 403 (146.9 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 88/197 (44%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L + F +G LS ++ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQV+VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKEMNGKQVYVGRAQKKGERQT-ELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTSQYMQRM 386
Score = 204 (76.9 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
Identities = 46/105 (43%), Positives = 72/105 (68%)
Query: 465 IPRRDASV---GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
+P + +V GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLL
Sbjct: 529 VPMQQPAVHVQGQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLL 585
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRS-----VAQQQANNPA 561
E+D +E+LH+LESPE+L++KV EA+ VL++ AQ+ +PA
Sbjct: 586 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVPSPA 630
Score = 204 (76.9 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 65/198 (32%), Positives = 101/198 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 313 KEERRARLQAQFSQMRPV 330
++ER A + A+ + V
Sbjct: 176 RKEREAEMGARAKEFTNV 193
Score = 110 (43.8 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 970 (346.5 bits), Expect = 1.1e-116, Sum P(2) = 1.1e-116
Identities = 186/324 (57%), Positives = 249/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN + DE LK++FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 466 (169.1 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 106/298 (35%), Positives = 174/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN GD ++DE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G SKG GFV+F E+A +A+ EMNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 387 (141.3 bits), Expect = 3.4e-54, Sum P(2) = 3.4e-54
Identities = 86/197 (43%), Positives = 120/197 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN ++ + L + F +G LS K+ TD +G+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N K +FVG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 209 (78.6 bits), Expect = 8.9e-30, Sum P(2) = 8.9e-30
Identities = 66/198 (33%), Positives = 102/198 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L + T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 313 KEERRARLQAQFSQMRPV 330
++ER A L A+ + V
Sbjct: 176 RKEREAELGARAKEFTNV 193
Score = 200 (75.5 bits), Expect = 1.1e-116, Sum P(2) = 1.1e-116
Identities = 41/85 (48%), Positives = 64/85 (75%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 595
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQA 557
ESPE+L++KV EA+ VL++ ++A
Sbjct: 596 ESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 111 (44.1 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
Score = 39 (18.8 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKV 516
SPE R+ + E++ L ++AA KV
Sbjct: 597 SPESLRSKVDEAVAVLQAHQAKEAAQKV 624
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 961 (343.3 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
Identities = 189/324 (58%), Positives = 247/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 485 (175.8 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 110/288 (38%), Positives = 173/288 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE D A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN GD +DDE+LKELFS++G S KVM DP+G SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLK 284
Score = 207 (77.9 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
Identities = 47/124 (37%), Positives = 76/124 (61%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPPVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS-VAQQQANNPADQL 564
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKEAAQKVGVV 626
Query: 565 ASLS 568
A+ S
Sbjct: 627 AATS 630
Score = 198 (74.8 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 963 (344.1 bits), Expect = 2.9e-116, Sum P(2) = 2.9e-116
Identities = 186/324 (57%), Positives = 248/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK+ FG+YG S VM D GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F+ FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 459 (166.6 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 105/298 (35%), Positives = 171/298 (57%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LKE F ++G S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G S+G GFV+F E+A +A+ +MNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 386 (140.9 bits), Expect = 2.2e-54, Sum P(2) = 2.2e-54
Identities = 85/197 (43%), Positives = 119/197 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L + F +G LS K+ TD G+S+GFGFV FE E AQ A+D +
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N K +FVG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +G+ITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 209 (78.6 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 203 (76.5 bits), Expect = 2.9e-116, Sum P(2) = 2.9e-116
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 595
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 566
ESPE+L++KV EA+ VL++ QA A ++ S
Sbjct: 596 ESPESLRSKVDEAVAVLQA---HQAKEAAQKVVS 626
Score = 113 (44.8 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 962 (343.7 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 186/324 (57%), Positives = 249/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E D+ LK IF +YG S VM D +GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +AV+ +NGK+ + + YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM D G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
Score = 472 (171.2 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 107/298 (35%), Positives = 175/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DD+KLK++FS++G S +VM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G S+G GFV+F E+A RA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMK 284
Score = 405 (147.6 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
Identities = 87/197 (44%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D L D FS +GN +S ++ TD +G+S+GFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N K ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQT-ELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM DG G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPFGTITSAKVMMDG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYMQRM 386
Score = 211 (79.3 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 66/198 (33%), Positives = 102/198 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L + T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 313 KEERRARLQAQFSQMRPV 330
++ER A L A+ + V
Sbjct: 176 RKEREAELGARAKEFTNV 193
Score = 202 (76.2 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 41/85 (48%), Positives = 64/85 (75%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHML 595
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQA 557
ESPE+L++KV EA+ VL++ ++A
Sbjct: 596 ESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 112 (44.5 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 948 (338.8 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 184/315 (58%), Positives = 243/315 (77%)
Query: 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
+NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+FGNILSCK+
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK-F 131
D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE + K K F
Sbjct: 61 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E +DA KAVE
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQ
Sbjct: 240 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 312 RKEERRARLQAQFSQ 326
RKEER+A L Q+ Q
Sbjct: 299 RKEERKAHLTNQYMQ 313
Score = 407 (148.3 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 90/208 (43%), Positives = 132/208 (63%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 17 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 75
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 76 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 125
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 126 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 185
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMR 328
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 186 SGKSIFVGRAQKKVERQAELKRKFEQLK 213
Score = 204 (76.9 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 45/112 (40%), Positives = 73/112 (65%)
Query: 456 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K
Sbjct: 476 PSPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGK 533
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQLAS 566
+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +A+
Sbjct: 534 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAA 585
Score = 186 (70.5 bits), Expect = 7.3e-28, Sum P(2) = 7.3e-28
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +M
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKM 87
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 122
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 948 (338.8 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 185/324 (57%), Positives = 247/324 (76%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 64 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 123
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + D+ LK++F +YG S VM D GKS+ FGFV++E
Sbjct: 183 EMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKH 242
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NG + + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 243 EDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNL 302
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 303 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 361
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 KPLYVALAQRKEERKAHLTNQYMQ 385
Score = 464 (168.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 103/288 (35%), Positives = 171/288 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L I L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 73 MNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK + FV+FE D A +A+E +NG +DR+ +VG+ + + ERE E+ +
Sbjct: 129 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAK 187
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN GD +DD++LKELF ++G S KVM DP+G S+G GFV
Sbjct: 188 ----AKEFT------NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFV 237
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ E+A++A+ EMNG + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 238 SYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLK 285
Score = 195 (73.7 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 64/200 (32%), Positives = 102/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 70
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 71 DTMNFDVVK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 115
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V
Sbjct: 116 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 174
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A + A+ + V
Sbjct: 175 KSRKEREAEMGAKAKEFTNV 194
Score = 194 (73.4 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 540 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 596
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
ES E+L++KV EA+ VL++ QA A Q
Sbjct: 597 ESHESLRSKVEEAVAVLQA---HQAKKDATQ 624
Score = 113 (44.8 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 286
T + +LY+ +L I + L E FS G + S +V RD + S G +V F P
Sbjct: 5 TAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 64
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+A RAL MN ++ KP+ + +QR R
Sbjct: 65 DAERALDTMNFDVVKGKPIRIMWSQRDPSLR 95
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 922 (329.6 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
Identities = 178/324 (54%), Positives = 243/324 (75%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 447 (162.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 102/288 (35%), Positives = 170/288 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G I+S ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ NVF+KNLDES ++ L F +G I S
Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D G S+ +GFV+FE + A +A++ +NG +DR+ +VG KS RE+EL
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL--- 181
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
E K V +F N+YIKN G+ +DD++L+E+FS FG S KVM D +G S+G GFV
Sbjct: 182 -EYGAK--VMEFT--NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ EEA +A++EMNGK + + +YV AQ++ ER+ L+ +F Q++
Sbjct: 237 NYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK 284
Score = 381 (139.2 bits), Expect = 3.9e-53, Sum P(2) = 3.9e-53
Identities = 82/197 (41%), Positives = 120/197 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D K L + FS+FGN LS K+ D +G+S+GFGFV + N E AQ A+ ++
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N + ++VG ++ ER+ +K KF N++VKNLD+ D+ L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YGTITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q +
Sbjct: 370 RKEERKAILTNQYMQRL 386
Score = 211 (79.3 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
Identities = 45/92 (48%), Positives = 67/92 (72%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA S LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 538 GQE-PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 533 ESPEALKAKVAEAMEVLRS-VAQQQANNPADQ 563
ESPE+L +KV EA+ VL++ A++ + A Q
Sbjct: 595 ESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626
Score = 187 (70.9 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRD-IATRRSLGYA-YINFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ F E G+ + S+R+ L+ K V N++IKNL +SID++
Sbjct: 70 DTMNF---EVIKGRPIRIMWSQRDPGLR-------KSGVG-----NVFIKNLDESIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ + ER A+ + V
Sbjct: 174 KSRRERELEYGAKVMEFTNV 193
Score = 37 (18.1 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
S+ + MP S A+ N P T L + + P V
Sbjct: 500 SIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAV 534
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 946 (338.1 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
Identities = 186/389 (47%), Positives = 261/389 (67%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ +ALD LN+T + + RIM+S RDPS+RK GTGN+FIKNLD +ID+KALHDTFS+
Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSA 190
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCK+A D G +KG+GFV F++ ESA AI+ +NGML+NDK+V+VGH + ++ER+
Sbjct: 191 FGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQ 250
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ A+K F NV++KNLD T+++ +FG++G ITS +++D + K + FGFVN+ N
Sbjct: 251 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ ++EQ E ++K+QG+NL+IKN
Sbjct: 311 HECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKN 370
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D +DDE+LK FS FGTITS K+M D G SKG GFV ++TPEEA++A+ EMN +M+
Sbjct: 371 LQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYGXXXX 361
KPLYVA+AQRKE RR++L+AQ + G +YG
Sbjct: 431 GKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGP-LIYGPGGY 489
Query: 362 XXXXXXXGFGYQQQLVPGMRPAGAPMPNF 390
G G +VPG PMP +
Sbjct: 490 PIPAAVNGRG--MPMVPGHN---GPMPMY 513
Score = 408 (148.7 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 99/313 (31%), Positives = 165/313 (52%)
Query: 17 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 76
TP N S+ PS + ++++ LD S+ L + F+S G + S ++ D
Sbjct: 62 TPTNASSVAT------PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDA 115
Query: 77 -SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVF 135
+ +S G+ +V F N E + A+D+LN LI + + +R+ K NVF
Sbjct: 116 VTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI----MWSQRDPSLRKMGTGNVF 171
Query: 136 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
+KNLD + ++ L F +G I S V D G +K +GFV+F++ + A A+E +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 231
Query: 196 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+D++ YVG + ER+ ++ +A+K N+YIKNL I +++ +LF
Sbjct: 232 LLNDKKVYVGHHVSRRERQSKV-----EALKANFT-----NVYIKNLDTEITEQEFSDLF 281
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
+FG ITS +++D + +G GFV ++ E A +A+ E+N K K LYV AQ+K E
Sbjct: 282 GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHE 341
Query: 316 RRARLQAQFSQMR 328
R L+ ++ QM+
Sbjct: 342 REEELRKRYEQMK 354
Score = 182 (69.1 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
Identities = 54/142 (38%), Positives = 71/142 (50%)
Query: 419 PLPI---MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
P+P+ MP Q P G A YP G N + G M+P V AG +A P
Sbjct: 509 PMPMYPGMPTQFPAGGPAPGYP-GMNARGPVPAQGRPMMMPGSVP-SAGPAEAEAVPAVP 566
Query: 476 -MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
MP + LA E ++ +LGE LYP V E + K+TGMLLEM +E+L LLE
Sbjct: 567 GMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLED 626
Query: 535 PEALKAKVAEAMEVLRSVAQQQ 556
AL +V EA+ VL+ Q+
Sbjct: 627 DSALNERVNEAIGVLQEFVDQE 648
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 931 (332.8 bits), Expect = 4.9e-112, Sum P(2) = 4.9e-112
Identities = 182/324 (56%), Positives = 242/324 (74%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A ALD +N+ + + IRIM+S RDP +RKSG GNIFIKN+D+SID+KAL+DTFS+F
Sbjct: 63 ADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E E LK IF E+G S VM D G+S+ FGFVNF N
Sbjct: 182 EMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DA +AV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E + ++QG+NLY+KNL
Sbjct: 242 GDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ F+ +GTITS KVM D G S+G GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYIQ 384
Score = 434 (157.8 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 100/288 (34%), Positives = 165/288 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L+ FS G I+S ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ N+F+KN+DES ++ L F +G I S
Sbjct: 72 MNYEVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG + + ERE E+ +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAK 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
A++ T N+YIKN G+ ID EKLK +F+EFG S VM D G S+G GFV
Sbjct: 187 ---AVEFT-------NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F +A RA+ EMNGK + + LYV AQ++ ER+ L+ +F Q++
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIK 284
Score = 358 (131.1 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 81/197 (41%), Positives = 117/197 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + ID + L + F+ FG LS + TD G+S+GFGFV F N A+ A+ ++
Sbjct: 192 NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N + ++VG ++ ER+ +K KF N++VKNLD+S DE L
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQG-ELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YGTITSA VM DG G S+ FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFAPYGTITSAKVMTDG-GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q +
Sbjct: 370 RKEERKAILTNQYIQRL 386
Score = 195 (73.7 bits), Expect = 4.9e-112, Sum P(2) = 4.9e-112
Identities = 54/122 (44%), Positives = 77/122 (63%)
Query: 434 YRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV---GQPMPITALSTALANAS 489
Y+Y G RN+Q + A P PV + + + +V GQ P+TA + LA A
Sbjct: 501 YKYSAGVRNVQQV---INA----PAPV-VHQVVQNTEPAVHMKGQE-PLTA--SMLAAAP 549
Query: 490 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
++Q+ LLGE LYPL++ L A K+TGMLLE+D +E+LH+LESPE+L AKV EA+ VL
Sbjct: 550 LKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAVL 609
Query: 550 RS 551
++
Sbjct: 610 QA 611
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 917 (327.9 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 177/324 (54%), Positives = 241/324 (74%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+G+GFV FE E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ F +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 445 (161.7 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 103/288 (35%), Positives = 170/288 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
+++I +L + L++ FS G I+S ++ D + +S + ++ F+ A+ A+D
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ NVF+KNLDES ++ L F +G I S
Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D G S+ +GFV+FE + A +A++ +NG +DR+ +VG KS RE+EL
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL--- 181
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
E K V +F N+YIKN G+ +DD++L+E+FS FG S KVM D SG S+G GFV
Sbjct: 182 -EYGAK--VMEFT--NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ EEA +A++EMNGK + + +YV AQ++ ER++ L+ +F Q++
Sbjct: 237 NYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIK 284
Score = 383 (139.9 bits), Expect = 1.9e-53, Sum P(2) = 1.9e-53
Identities = 83/197 (42%), Positives = 121/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D K L + FS+FGN LS K+ D SG+S+GFGFV + N E AQ A+ ++
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N + ++VG ++ ER++ +K KF N++VKNLD+ D+ L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQS-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YGTITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q +
Sbjct: 370 RKEERKAILTNQYMQRL 386
Score = 206 (77.6 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 49/131 (37%), Positives = 77/131 (58%)
Query: 440 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-PITALSTALANASPEQQRTLLG 498
R M + + G ++ P+ A + Q P+TA + LA A P++Q+ +LG
Sbjct: 503 RTMPHYKYSCGVRNVQPIVSSTHLQQVMEPAVLMQGQEPLTA--SLLAGAPPQEQKQMLG 560
Query: 499 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 558
E +YP++ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA
Sbjct: 561 ERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAK 617
Query: 559 NPADQLASLSL 569
A + A SL
Sbjct: 618 ENAQKSAQPSL 628
Score = 179 (68.1 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 39/95 (41%), Positives = 58/95 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL +SID++ L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ M
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTM 158
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
NG ++ + ++V + + ER A+ + V
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNV 193
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 924 (330.3 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 180/322 (55%), Positives = 241/322 (74%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE +
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ 326
LYVA+AQRKEER+A L ++ Q
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQ 384
Score = 468 (169.8 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 113/299 (37%), Positives = 174/299 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + KE F N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGAR----AKE----FP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 404 (147.3 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 87/196 (44%), Positives = 122/196 (62%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKT----------KFN--NVFVKNLDESTTDEDLK 149
NG +N KQ++VG +K ER+T +T ++ N++VKNLD+ DE L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+
Sbjct: 312 KAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 210 KSEREQELKGQFEQAM 225
K ER+ L ++ Q M
Sbjct: 371 KEERQAYLTNEYMQRM 386
Score = 195 (73.7 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 37/83 (44%), Positives = 62/83 (74%)
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 598
Query: 539 KAKVAEAMEVLRSVAQQQANNPA 561
++KV EA+ VL++ ++A A
Sbjct: 599 RSKVDEAVAVLQAHQAKEATQKA 621
Score = 193 (73.0 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 64/185 (34%), Positives = 89/185 (48%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
KQ+R T + + N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV
Sbjct: 284 KQDRIT---RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVC 339
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET--VDK----- 231
F + ++A KAV +NG+ + YV AQ+K ER+ L ++ Q M V
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 232 ---FQGLNLYIKNLGDSIDDEKLKELF-SEFGTITSCK---VMRDPSGISKGSGFVAFST 284
F +N ++ L S T + PS I G+ V FST
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFST 459
Query: 285 PEEAS 289
AS
Sbjct: 460 MRPAS 464
Score = 101 (40.6 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD--PSGISKGSGFVAF 282
M + + +LY+ +L + + L E FS G I S ++ RD SG S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNF 59
Query: 283 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
++A AL MN +I KP+ + +QR R
Sbjct: 60 QHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 924 (330.3 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 180/324 (55%), Positives = 240/324 (74%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G S+G GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + D L++IF +G S VM D G+SK FGFVNFE
Sbjct: 182 EFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E V ++QG+NLY+KNL
Sbjct: 242 EEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 465 (168.7 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 106/288 (36%), Positives = 169/288 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D S +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + V + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFEVIKGRPVRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G S+ GFV+FE + A +A++ +NG +DR+ +VG + + ERE E +
Sbjct: 128 CKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGAR 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
AM+ T N+YIKN GD +DD +L+E+FS FG S KVM D +G SKG GFV
Sbjct: 187 ---AMEFT-------NVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+A+MNGK I + +YV AQ++ ER++ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMK 284
Score = 377 (137.8 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 85/197 (43%), Positives = 116/197 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN +D L + FS FG LS K+ D +G+SKGFGFV FE E AQ A+ +
Sbjct: 192 NVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG IN + V+VG ++ ER++ +K KF N++VKNLD+ DE L
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQS-ELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YGTITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q +
Sbjct: 370 RKEERKAILTNQYMQRL 386
Score = 195 (73.7 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 53/127 (41%), Positives = 79/127 (62%)
Query: 434 YRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 492
Y+Y L RN+Q P MG+ +P P G P GQ P+TA + LA A P++
Sbjct: 509 YKYSLAVRNIQ--P--MGS---VP-PGAQQVGEPAVHIQ-GQE-PLTA--SMLAAAPPQE 556
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 552
Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L LLESPE+L +K+ EA+ VL++
Sbjct: 557 QKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAVAVLQAH 616
Query: 553 AQQQANN 559
+A++
Sbjct: 617 QATEASH 623
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 934 (333.8 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 182/324 (56%), Positives = 243/324 (75%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 426 (155.0 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57
Identities = 100/296 (33%), Positives = 169/296 (57%)
Query: 38 SGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 92
SG+G ++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
A+ A+D +N ++ + + + +R+ K+ N+F+KNL++S ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+G I S V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
RE EL + A++ T N+Y+KNL +D++ L++LFS+FG + S KVMRD SG
Sbjct: 179 REAELGAR---ALEFT-------NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
S+ GFV F EEA +A+ MNGK + + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 360 (131.8 bits), Expect = 7.7e-46, Sum P(2) = 7.7e-46
Identities = 80/197 (40%), Positives = 115/197 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
NI++KNL +D + L D FS FG +LS K+ D SG S+ FGFV FE E AQ A+ +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG ++ + ++ G ++ ER+ +K +F N++VKNLD+S D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQN-ELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YG ITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q +
Sbjct: 370 RKEERKAILTNQYMQRL 386
Score = 178 (67.7 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +L
Sbjct: 527 GQE-PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLML 583
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNP 560
ESPE+L AK+ EA+ VL+ A Q P
Sbjct: 584 ESPESLHAKIDEAVAVLQ--AHQAMEQP 609
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 917 (327.9 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 178/324 (54%), Positives = 242/324 (74%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ LK+IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 445 (161.7 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 104/288 (36%), Positives = 169/288 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
+++I +L + L++ FS G I+S ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D G S+ +GFV+FE + A +A++ +NG +DR+ +VG KS RE+EL
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL--- 181
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
E K V +F N+YIKN G+ +DD++LKE+FS FG S KVM D SG S+G GFV
Sbjct: 182 -EYGAK--VMEFT--NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ EEA +A+ EMNGK + + +YV AQ++ ER+ L+ +F Q++
Sbjct: 237 NYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIK 284
Score = 380 (138.8 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 83/197 (42%), Positives = 119/197 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D K L + FS+FGN LS K+ D SG+S+GFGFV + N E AQ A+ ++
Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N + V+VG ++ ER+ +K KF N++VKNLD+ D+ L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YGTITS VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPYGTITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q +
Sbjct: 370 RKEERKAILTNQYMQRL 386
Score = 195 (73.7 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA A ++Q+ +LGE +YPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 538 GQE-PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 569
ESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 595 ESPESLHSKVEEAVAVLQA---HQAKESAPKSAPQSL 628
Score = 188 (71.2 bits), Expect = 5.9e-27, Sum P(2) = 5.9e-27
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
++++ +L T+ L + F G I S V RD + G+ + N A A AL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRD-IATRRSLGYA-YINFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ F E G+ + S+R+ L+ K V N++IKNL DSID++
Sbjct: 70 DTMNF---EVIKGRPIRIMWSQRDPGLR-------KSGVG-----NVFIKNLDDSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V
Sbjct: 115 LYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ + ER A+ + V
Sbjct: 174 KSRRERELEYGAKVMEFTNV 193
Score = 113 (44.8 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M T ++ +LYI +L + + L E FS G I S +V RD + S G ++ F
Sbjct: 1 MNATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN ++I +P+ + +QR
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRIMWSQR 89
Score = 42 (19.8 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 23/115 (20%), Positives = 42/115 (36%)
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
Q P P+M P R H+ + + P + + + + + +AS+ +
Sbjct: 445 QPPAPLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRVANIGTQTAGARAQVNASIMRA 504
Query: 476 MPITALSTALANASPEQQRTLLGESLYPLV-EQLERDAAAKVTGMLLEMDQTEVL 529
MP S + N P L + L P V Q + A + +Q ++L
Sbjct: 505 MPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPLTASLLAAAPLQEQKQIL 559
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 934 (333.8 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 181/324 (55%), Positives = 246/324 (75%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+R+SG GN+FIKNL+K+ID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ +TK F NV++KN + D+ L +FG +G + S VM D GKSK FGFV+FE
Sbjct: 182 ELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + + YVG AQKK +R ELK +FEQ ++ ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A++EMNG+++ +
Sbjct: 302 DDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYIQ 384
Score = 437 (158.9 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 105/287 (36%), Positives = 163/287 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FSS G ILS ++ D + +S G+ V FE A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K V + +R+ ++ NVF+KNL+++ ++ L F +G I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTR 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN GD +DD+ L LF FG + S KVM D G SKG GFV
Sbjct: 187 ----TKEFT------NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
+F E+A +A+ EMNGK + K +YV AQ+K +R L+ +F Q+
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQV 283
Score = 392 (143.0 bits), Expect = 4.6e-52, Sum P(2) = 4.6e-52
Identities = 85/197 (43%), Positives = 118/197 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN +D K L+ F FG +LS K+ TD G+SKGFGFV FE E AQ A+D++
Sbjct: 192 NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N K ++VG +K +R + +K KF N++VKNLD+ DE L
Sbjct: 252 NGKELNGKHIYVGPAQKKVDRH-IELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITS VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 QKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 370 RKEERQAHLTNQYIQRM 386
Score = 174 (66.3 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 42/93 (45%), Positives = 62/93 (66%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P TA ST L A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E LH+L
Sbjct: 536 GQE-PWTA-ST-LGTA-PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHML 591
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
+SPE+L ++ EA+ L++ QAN A + A
Sbjct: 592 DSPESLCSRAQEAVSALQA---HQANEAAQKAA 621
Score = 43 (20.2 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
Identities = 22/92 (23%), Positives = 37/92 (40%)
Query: 432 HAYR-YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASP 490
+AY+ P G ++ P P + + R A +P P +S A A+P
Sbjct: 398 NAYQPAPSGYSVAAVPQTQNCAPCCPSQIVQPSPSTRWTAQGARPHPFPNVSGASHPAAP 457
Query: 491 EQQRTLL--GESLYPLVEQLER--DAAAKVTG 518
+ T + S P V +R + +A+ TG
Sbjct: 458 KSSFTTVRPSSSHVPQVMAAQRITNTSAQTTG 489
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 925 (330.7 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 182/324 (56%), Positives = 241/324 (74%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQNAI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL + L+ +F ++G I S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ F+ +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYIQ 384
Score = 441 (160.3 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 101/288 (35%), Positives = 167/288 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ NVF+KNL++S ++ L F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D G S+ FGFV+FE + A A+ +NG +DR+ +VG + + ERE EL +
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
A++ T N+Y+KNL +D+ L++LFS+FG I S KVMRD SG S+G GFV
Sbjct: 187 ---ALEFT-------NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F E+A +A+ +MNGK + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 237 NFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMK 284
Score = 379 (138.5 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 84/197 (42%), Positives = 117/197 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
NI++KNL +D + L D FS FG ILS K+ D SG S+GFGFV FE E AQ A+ +
Sbjct: 192 NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG ++ + ++VG ++ ER+ +K +F N++VKNLD+S DE L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQN-ELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YG ITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFAPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q +
Sbjct: 370 RKEERKAILTNQYIQRL 386
Score = 180 (68.4 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
G +PR++ P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLL
Sbjct: 520 GVRVPRQE-------PLTA--SVLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLL 570
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
E+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 571 EIDNSELLLMLESPESLSAKVEEALAVLQA 600
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 781 (280.0 bits), Expect = 3.5e-109, Sum P(3) = 3.5e-109
Identities = 144/264 (54%), Positives = 204/264 (77%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN++ TD++ + +F +YG +TS+ + RD + GKS+ FGFVNF + +DA
Sbjct: 237 MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDA 296
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+KAV+ LN K+F + YVG+AQKK ERE+EL+ +E A +E K+QG+NLYIKNL D
Sbjct: 297 SKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDE 356
Query: 246 IDDEKLKELFSEFGTITSCKVMRD 269
+DDEKL++LFSEFG ITS KVMRD
Sbjct: 357 VDDEKLRQLFSEFGPITSAKVMRD 380
Score = 396 (144.5 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 89/291 (30%), Positives = 161/291 (55%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V +D +G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK-- 233
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGS 277
F++ MK N+Y+KN+ + D++ + LF ++G +TS + RD +G S+G
Sbjct: 234 --FDE-MKANFT-----NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGF 285
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV F++ E+AS+A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 180 (68.4 bits), Expect = 3.5e-109, Sum P(3) = 3.5e-109
Identities = 39/104 (37%), Positives = 62/104 (59%)
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
AG P G P + A+A+ +P QQ+ +LGE+++P ++ + + A K+TGMLLE
Sbjct: 651 AGAPAGARGAGAPEGLQGQLAAVAD-NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLE 709
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 566
MD TE++ L+E+ AL++KV EA+ V +QQ + Q S
Sbjct: 710 MDNTELVALVENDGALRSKVDEALAVYDDYVRQQGDGEGAQAPS 753
Score = 152 (58.6 bits), Expect = 3.5e-109, Sum P(3) = 3.5e-109
Identities = 31/57 (54%), Positives = 45/57 (78%)
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G SKG GFV F+ P++A++A+AEMN +M+ +KPLYVA+AQRK+ R+ +L+ Q Q R
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQAR 485
Score = 117 (46.2 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 227
GKSK FGFV F N DDA KAV +N + +++ YV AQ+K R+ +L+ Q QA +
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQARNQ 487
Score = 98 (39.6 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 78 GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
G+SKGFGFV F N + A A+ ++N ++N+K ++V RK R+
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRK 475
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 924 (330.3 bits), Expect = 4.4e-109, Sum P(2) = 4.4e-109
Identities = 181/324 (55%), Positives = 242/324 (74%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQNAI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NG++ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 443 (161.0 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 100/288 (34%), Positives = 168/288 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ N+F+KNL++S ++ L F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D G S+ FGFV+FE + A A+ +NG +DR+ +VG + + ERE EL +
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGAR 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
AM+ T N+Y+KNL +D+++L++LFS+FG + S KVMRD SG S+G GFV
Sbjct: 187 ---AMEFT-------NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+ MNG+ + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMK 284
Score = 375 (137.1 bits), Expect = 6.5e-48, Sum P(2) = 6.5e-48
Identities = 83/197 (42%), Positives = 117/197 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
NI++KNL +D + L D FS FG +LS K+ D SG S+GFGFV FE E AQ A+ +
Sbjct: 192 NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG ++ + ++VG ++ ER+ +K +F N++VKNLD+S DE L
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQN-ELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YG ITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q +
Sbjct: 370 RKEERKAILTNQYMQRL 386
Score = 174 (66.3 bits), Expect = 4.4e-109, Sum P(2) = 4.4e-109
Identities = 39/79 (49%), Positives = 56/79 (70%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E+L +L
Sbjct: 530 GQE-PLTA--SMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLML 586
Query: 533 ESPEALKAKVAEAMEVLRS 551
ESPE+L AKV EA+ VL++
Sbjct: 587 ESPESLNAKVEEALAVLQA 605
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 916 (327.5 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 180/324 (55%), Positives = 240/324 (74%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F +G + S VMRD G S+ FGFVNF+
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 442 (160.7 bits), Expect = 2.5e-58, Sum P(2) = 2.5e-58
Identities = 100/288 (34%), Positives = 169/288 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ N+F+KNL++S ++ L F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + ERE EL +
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGAR 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
AM+ T N+Y+KNL +D++ L++LFS FG + S KVMRD SG S+G GFV
Sbjct: 187 ---AMEFT-------NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+ +MNGK + + LYV AQ++ ER++ L+ +F Q++
Sbjct: 237 NFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLK 284
Score = 374 (136.7 bits), Expect = 8.3e-48, Sum P(2) = 8.3e-48
Identities = 85/206 (41%), Positives = 121/206 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
NI++KNL +D + L D FS FG +LS K+ D SG S+GFGFV F+ E AQ A+ +
Sbjct: 192 NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG ++ + ++VG ++ ER++ +K +F N++VKNLD+S DE L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQS-ELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F YG ITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 311 RKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQ 369
Query: 209 KKSEREQELKGQFEQAMKETVDKFQG 234
+K ER+ L Q+ Q + TV G
Sbjct: 370 RKEERKAILTNQYMQRLS-TVRALGG 394
Score = 177 (67.4 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 531
+GQ P+TA + LA A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +
Sbjct: 565 LGQE-PLTA--SMLAAAPLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLM 621
Query: 532 LESPEALKAKVAEAMEVLRS 551
LESPE+L AKV EA+ VL++
Sbjct: 622 LESPESLNAKVEEALAVLQA 641
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 905 (323.6 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 183/336 (54%), Positives = 241/336 (71%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A RALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLD+SID K L+DTFS+
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSA 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ D +G SKG+GFV FE +E A+ AI+K+NGM +ND++VFVG F +++R+
Sbjct: 122 FGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQ 180
Query: 124 T-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ + K F NV++KNL E DE L+ +F +G S VM D GKSK FGFV+FE
Sbjct: 181 AELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF--------- 232
+DA KAV+ +NGK + ++ YVG+AQKK ER+ ELK +F Q MK+ K
Sbjct: 241 HEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKPKIEQVPQDRSV 299
Query: 233 --QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 290
QG+NLY+KNL D IDDE+L++ FS FGTITS KV + G SKG GFV FS+PEEA++
Sbjct: 300 RCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATK 358
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 359 AVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQ 394
Score = 477 (173.0 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
Identities = 112/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + + S G+ V F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
E A+ A+D +N +I K V + +R+ K+ N+FVKNLD S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE ++A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+R+ EL + KE N+YIKNLG+ +DDE+L++LFS FG S KVM D
Sbjct: 177 RDRQAELGAR----AKEFT------NVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 212 (79.7 bits), Expect = 3.7e-27, Sum P(2) = 3.7e-27
Identities = 45/96 (46%), Positives = 61/96 (63%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNLD+ DE L+K F +GTITSA V +G G+SK FGFV F + ++A KAV +
Sbjct: 305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEM 363
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 228
NG+ + YV AQ+K ER+ L Q+ Q M T
Sbjct: 364 NGRIVATKPLYVALAQRKEERQAHLSNQYMQRMAST 399
Score = 205 (77.2 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 66/200 (33%), Positives = 101/200 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTR-RSLGYASV-NFQQLEDAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N+++KNL SID +
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFVKNLDRSIDSKT 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T EEA RA+ +MNG + + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ + +R+A L A+ + V
Sbjct: 174 KSRRDRQAELGARAKEFTNV 193
Score = 172 (65.6 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 42/138 (30%), Positives = 72/138 (52%)
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
PH P P R + + + G + P ++ + + ++V + +
Sbjct: 499 PH--PAAASTAAAPAARTVTQYKYTAGVRNP-PQHLNTQPQVTTQRSAVSAQGKESLTVS 555
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
LA+A P+ Q+ +LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L KV
Sbjct: 556 MLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKVD 615
Query: 544 EAMEVLRSVAQQQANNPA 561
EA+ VL++ ++ + A
Sbjct: 616 EAIAVLQAHQAKETSQKA 633
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 858 (307.1 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 168/287 (58%), Positives = 222/287 (77%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+FIKNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+ FV FE +E+A AI+K+
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 102 NGMLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
NGML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 180
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+FEQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GF
Sbjct: 181 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 239
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
V FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 240 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 286
Score = 413 (150.4 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 90/196 (45%), Positives = 128/196 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A KA+E +
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
NG +DR+ +VG+ + + ERE EL + KE N+YIKN G+ +DDE LK
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIKNFGEEVDDESLK 110
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
ELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I K ++V AQ+
Sbjct: 111 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 170
Query: 313 KEERRARLQAQFSQMR 328
K ER+A L+ +F Q++
Sbjct: 171 KVERQAELKRKFEQLK 186
Score = 206 (77.6 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 43/95 (45%), Positives = 71/95 (74%)
Query: 474 QPM-PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
QP+ P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+L
Sbjct: 455 QPLQPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 512
Query: 533 ESPEALKAKVAEAMEVLRSV-AQQQANNPADQLAS 566
ESPE+L++KV EA+ VL++ A+++A +A+
Sbjct: 513 ESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAA 547
Score = 185 (70.2 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 95
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 902 (322.6 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 175/322 (54%), Positives = 244/322 (75%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+SHRDP +R+SG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILS K+ + G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF +Q+RE
Sbjct: 123 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A F N++VKNL ++ L+ +F ++G S VMRD +G+S+ FGF+NFE
Sbjct: 182 ELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG+NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI+D++LKE+FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSINDDRLKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF 324
KPLYVA+AQRKEER+A L Q+
Sbjct: 361 KPLYVALAQRKEERKAILTNQY 382
Score = 426 (155.0 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 96/288 (33%), Positives = 166/288 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + R+ ++ N+F+KNL+ S ++ L F +G+I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ V+ + G S+ FGFV+FE + A KA+ +NG +DR+ +VG + + +RE EL +
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
A+ T N+Y+KNL +D++ L++LFS+FG S KVMRD +G S+G GF+
Sbjct: 187 ---ALGFT-------NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFI 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+ MNGK + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMK 284
Score = 376 (137.4 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
Identities = 84/218 (38%), Positives = 124/218 (56%)
Query: 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ 95
R G NI++KNL +D + L D FS FG S K+ D +GQS+GFGF+ FE E AQ
Sbjct: 186 RALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQ 245
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDES 142
A+D +NG ++ + ++VG ++ ER+ +K +F N++VKNLD+S
Sbjct: 246 KAVDHMNGKEVSGQLLYVGRAQKRAERQN-ELKRRFEQMKQERQNRYQGVNLYVKNLDDS 304
Query: 143 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 202
D+ LK++F YG ITSA VM + SK FGFV F + ++A KAV +NG+ +
Sbjct: 305 INDDRLKEVFSTYGVITSAKVMTESS-HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETV-DKFQGLNLYI 239
YV AQ+K ER+ L Q+ + + +V FQ Y+
Sbjct: 364 YVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTSYL 401
Score = 206 (77.6 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 60/193 (31%), Positives = 104/193 (53%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 190
++++V +L T+ L ++F GTI S V RD +S + ++NF+ DA +A++
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+N + + + S R+ L+ M G N++IKNL +SID++
Sbjct: 71 TMNFEMIKGQPIRI----MWSHRDPGLR---RSGM--------G-NIFIKNLENSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG+I S KV+ + G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 115 LYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHF 173
Query: 311 QRKEERRARLQAQ 323
+ +++R A L A+
Sbjct: 174 KSRQKREAELGAR 186
Score = 157 (60.3 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 481 LSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 539
L+ ++ +A+P +Q+ ++GE LY L+ K+TGMLLEMD E+L LLESPE+L
Sbjct: 526 LTVSMLDAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLH 585
Query: 540 AKVAEAMEVLRS 551
AK EA+ VL++
Sbjct: 586 AKAEEAVAVLKA 597
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 921 (329.3 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 186/323 (57%), Positives = 233/323 (72%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD LN TP+ K+ RIM+S RDPS+RKSG GN+FIKNLDK IDHKAL+DTFS+F
Sbjct: 62 ADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAF 121
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ TD SKGFGFV +E +ESA AI K+NGM+IN ++VFVG F +ER
Sbjct: 122 GNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQ 181
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ KF NVF KNL E + LK++ +YG IT+ +M D GKSK FGF NFE+A+
Sbjct: 182 PT-EVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEA 240
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A VE NGK F + Y G+AQKK ERE ELK FE K+QG+NLYIKN+ D
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDD 293
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SID++KL+E+FS+FGTITS VM+D SKG GFV ++ P+EA+RA+ EMNG+MI +K
Sbjct: 294 SIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTK 353
Query: 304 PLYVAVAQRKEERRARLQAQFSQ 326
PLYVA+AQRK+ RRA+L+ Q Q
Sbjct: 354 PLYVALAQRKDIRRAQLEMQHQQ 376
Score = 350 (128.3 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 70/191 (36%), Positives = 113/191 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+F KNL + + L + +G I + I D G+SKGFGF FE+ E+A+N ++
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENE 248
Query: 102 NGMLINDKQVFVGHFLRKQERETV---AIKTKFN--NVFVKNLDESTTDEDLKKIFGEYG 156
NG + + K ++ G +K ERE +TK+ N+++KN+D+S ++ L+++F ++G
Sbjct: 249 NGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFG 308
Query: 157 TITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
TITSA+VM+D SK FGFV + D+A +AV +NG+ + YV AQ+K R
Sbjct: 309 TITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRA 368
Query: 216 ELKGQFEQAMK 226
+L+ Q +Q K
Sbjct: 369 QLEMQHQQKFK 379
Score = 230 (86.0 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 63/199 (31%), Positives = 107/199 (53%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 190
++++V +L +++ L +IF + G +++ V RD + + S + +VN+ N DA +A++
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 191 ALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
LN GKA + S+R+ L+ K V N++IKNL ID
Sbjct: 70 TLNNTPIR------GKACRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKGIDH 111
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV+ D SKG GFV + T E A +A+A++NG MI + ++V
Sbjct: 112 KALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG 171
Query: 309 VAQRKEERRARLQAQFSQM 327
+ +ER + +F+ +
Sbjct: 172 PFKSSKERGQPTEVKFTNV 190
Score = 212 (79.7 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 68/262 (25%), Positives = 122/262 (46%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
+ ++++ +L + + L + F+ G + + ++ D + +S + +V + N A+ A+
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I K + +R+ K+ NVF+KNLD+ + L F +G I
Sbjct: 69 DTLNNTPIRGKACRI----MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNI 124
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ--E 216
S V+ D SK FGFV++E + A KA+ +NG + ++ +VG + ER Q E
Sbjct: 125 LSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE 184
Query: 217 LK--GQFEQAMKETV--DKFQGL-NLY--IKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+K F + + E V D+ + L Y I N+ DD+ + F F S + ++
Sbjct: 185 VKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFG-FANFESAEAAKN 243
Query: 270 PSGISKGSGFVAFSTPEEASRA 291
+ +G + P A RA
Sbjct: 244 V--VENENGKIFHGKPIYAGRA 263
Score = 136 (52.9 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 41/126 (32%), Positives = 63/126 (50%)
Query: 429 PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST-ALAN 487
PR + R G+ Q+ P +G+ P+PV + +AL+ ++ N
Sbjct: 440 PRQNGPRQNGGQPRQNGPRPDVSGAQ-PIPVQQQTTLDVAQTQQAASSAESALNLQSIIN 498
Query: 488 A-SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVLHLLESPEALKAKVAEA 545
S +QQ LGE LYPL+ + D A K+TGMLL+ + E+ L + + L K+ EA
Sbjct: 499 LPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIREA 558
Query: 546 MEVLRS 551
+EVL S
Sbjct: 559 LEVLGS 564
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 843 (301.8 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 173/333 (51%), Positives = 233/333 (69%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS + + A N +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSYMQRMASVRAVPNPVINPY 360
Query: 303 KPL----YVAVAQRKEERRARLQ--AQFSQMRP 329
+P Y A + + RA +Q +Q+RP
Sbjct: 361 QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRP 393
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 210 (79.0 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 193 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 311 QRKEERRARLQAQFSQMRPV 330
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 501 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 557
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 558 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 586
Score = 113 (44.8 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 927 (331.4 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 181/325 (55%), Positives = 245/325 (75%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+ P+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG IL
Sbjct: 108 KAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 167
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 168 SCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEE 227
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D + ++E +K+F +G ITS + +D DGKSK FGFVNFE+ + A
Sbjct: 228 MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAV 287
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL++KNL D+I
Sbjct: 288 KAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTI 347
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FGTITS KVM D +G SKG GFV F+TPEEA++A+ EMN +MI KPLY
Sbjct: 348 DSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLY 407
Query: 307 VAVAQRKEERRARLQAQF---SQMR 328
VA+AQRK+ RR++L+ Q +QMR
Sbjct: 408 VALAQRKDVRRSQLEQQIQARNQMR 432
Score = 419 (152.6 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 99/290 (34%), Positives = 159/290 (54%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ L+ S++ L + FS G + S ++ D S +S G+ +V + E + AI
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN I + + +R+ A ++ N+F+KNL + ++ L F +G I
Sbjct: 111 EELNYNPIEGRPCRI----MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKI 166
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SKCFGFV++E A+ A A+E +NG +DRE +VGK K +RE +
Sbjct: 167 LSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK-- 224
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
FE+ MK N+Y+KN+ + +E ++LFS FG ITS + +D G SKG G
Sbjct: 225 --FEE-MKANFT-----NIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFG 276
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F E A +A+ E+N K I + +YV AQ+K ER L+ Q+ +R
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Score = 218 (81.8 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 58/204 (28%), Positives = 100/204 (49%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 177
+++ E+ + +++V L+ S + L +IF G ++S V RD KS + +V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 99 NYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG----------------NI 142
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+IKNL +ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG
Sbjct: 143 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
Query: 298 KMIVSKPLYVAVAQRKEERRARLQ 321
++ + ++V K++R ++ +
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFE 226
Score = 119 (46.9 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 481 LSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
L+ +++ +QQ+ +LGE LYP + + E +AA K+TGM+L ++ E+L LL+ E
Sbjct: 541 LAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDE 600
Query: 537 ALKAKVAEAMEVLRSVAQQQANNPADQLA 565
+A+ + +A A++ A
Sbjct: 601 LFNNHFEDALTAFEEYKKSEAAGNAEEQA 629
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 880 (314.8 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 177/326 (54%), Positives = 236/326 (72%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK ID+K+++DTFS F
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV FE +E+AQNAI K+NGML+ K+VFVG F + +R
Sbjct: 144 GNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 125 VAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+T +F NV+VKN + E L+K+F ++G ITS VM +GKSK FGFV F N
Sbjct: 204 ELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANP 262
Query: 183 DDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
++A AV+AL+ + D + +V +AQKKSER ELK + EQ E + K+QG+NLY+K
Sbjct: 263 EEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVK 322
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +++DD+ LK+ F +G ITS KVM D +G SKG GFV F PEEA+ A+ EMN KM+
Sbjct: 323 NLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ 326
SKPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 383 CSKPLYVAIAQRKEDRRAQLASQYMQ 408
Score = 410 (149.4 bits), Expect = 5.6e-53, Sum P(2) = 5.6e-53
Identities = 98/294 (33%), Positives = 164/294 (55%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L + FS+ G +LS ++ D + + S G+ +V F+ A+ A+D
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ K + + +R+ ++ N+F+KNLD+ ++ + F +G I S
Sbjct: 93 MNFEALHGKPMRI----MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D DG SK +GFV+FE + A A++ +NG ++ +VGK Q +++R +EL G
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL-G- 206
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
ET +F N+Y+KN GD + E L++LF++FG ITSC+VM G SKG GFV
Sbjct: 207 ------ETAKQFT--NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFV 257
Query: 281 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
AF+ PEEA A+ ++ I L+V AQ+K ER A L+ + Q + M
Sbjct: 258 AFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Score = 328 (120.5 bits), Expect = 6.5e-40, Sum P(2) = 6.5e-40
Identities = 78/198 (39%), Positives = 109/198 (55%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KN + + L F+ FGNI SC++ T G+SKGFGFV F N E A+ A+ L
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQAL 272
Query: 102 NGMLIN--DKQVFVGHFLRKQERETVAIKT----------KFN--NVFVKNLDESTTDED 147
+ I D ++ V +K ER K K+ N++VKNLDE+ D+
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
LKK F YG ITSA VM D +G+SK FGFV FE ++A AV +N K + YV A
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Query: 208 QKKSEREQELKGQFEQAM 225
Q+K +R +L Q+ Q +
Sbjct: 393 QRKEDRRAQLASQYMQRL 410
Score = 164 (62.8 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 39/88 (44%), Positives = 60/88 (68%)
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL---ERDAAAKVTGMLLEMDQTEV 528
+G P+T S LA A+P++Q+ LLGE +Y L+E+L +DA K+TGM+LE+D +E+
Sbjct: 563 IGGQEPLT--SAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAG-KITGMMLEIDNSEL 619
Query: 529 LHLLESPEALKAKVAEAMEVLRSVAQQQ 556
+ +L+ E ++KV EA VL S AQ+Q
Sbjct: 620 IMMLQDSELFRSKVDEAASVLVS-AQKQ 646
Score = 115 (45.5 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 280
+ +T + +LY+ +L +++ L E FS G + S +V RD + +S G +V
Sbjct: 19 QPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYV 78
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
F P +A RA+ MN + + KP+ + +QR R
Sbjct: 79 NFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMR 115
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 878 (314.1 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 176/326 (53%), Positives = 235/326 (72%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF ++ + +RIM+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS F
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLF 168
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+ATD G SKG+GFV FE + SAQ AI+K+NGML++DK+V+VG F + +R
Sbjct: 169 GNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK 228
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E K+ NVFVKN E E L +F ++G ITSAVVM D GK K FGFV F +
Sbjct: 229 ELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
Query: 183 DDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
D A +AVE LN + D + V +AQKKSER ELK ++E +E V ++QG+NLY+K
Sbjct: 289 DAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVK 348
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
N+ + ++D+ L++ FS FGTITS KVM D +G SKG GFV F PEEA+ A+ +MN KMI
Sbjct: 349 NIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMI 408
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ 326
+KPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 409 GAKPLYVALAQRKEDRRAQLASQYMQ 434
Score = 415 (151.1 bits), Expect = 2.4e-52, Sum P(2) = 2.4e-52
Identities = 95/290 (32%), Positives = 161/290 (55%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
+++I +L + L + FS G +LS ++ D + + S G+ +V F+ A+ A+D
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I+ + + + +R+ A + N+F+KNLD ++ + F +G I S
Sbjct: 118 MNFEVIHGRPMRI----MWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D +G SK +GFV+FE A A+E +NG D++ YVGK Q +++R +EL G
Sbjct: 174 CKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKEL-G- 231
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
E +K T N+++KN G+ +D EKL +FS+FG ITS VM D G KG GFV
Sbjct: 232 -ESGLKYT-------NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAV--AQRKEERRARLQAQFSQMR 328
AF+ + A +A+ ++N ++ ++V AQ+K ER A L+ ++ ++
Sbjct: 284 AFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALK 333
Score = 329 (120.9 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 74/199 (37%), Positives = 113/199 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+F+KN + +D + L FS FG I S + TD G+ KGFGFV F ++++A A++KL
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 102 NGMLIN--DKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDE 146
N ++ D ++ V +K ER + +K K+ N++VKN++E D+
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSER-SAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDD 357
Query: 147 DLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206
L+ F +GTITSA VM D +G+SK FGFV FE ++A AV +N K + YV
Sbjct: 358 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
Query: 207 AQKKSEREQELKGQFEQAM 225
AQ+K +R +L Q+ Q +
Sbjct: 418 AQRKEDRRAQLASQYMQRL 436
Score = 156 (60.0 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPE 536
T S LA A+P++Q+ LLGE +Y L+E++ A K+TGM+LE+D E++ +L+ E
Sbjct: 603 TLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAE 662
Query: 537 ALKAKVAEAMEVLRSVAQQQANNPA 561
++KV EA VL + A+ A
Sbjct: 663 LFRSKVEEAFGVLTNAQSAAASTSA 687
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 808 (289.5 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 157/312 (50%), Positives = 218/312 (69%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 98 RALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D DE+ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQ 277
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 278 AAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDV 337
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPL 305
DD+KL+ELF +GTITS KVMRD + + +TPE ++ A N K +
Sbjct: 338 DDDKLRELFGPYGTITSAKVMRDTAPVET-------ATPESETKESANKENEKAAEGEKE 390
Query: 306 YVAVAQRKEERR 317
A + KEE++
Sbjct: 391 PAAEEKEKEEKK 402
Score = 450 (163.5 bits), Expect = 8.0e-63, Sum P(2) = 8.0e-63
Identities = 106/315 (33%), Positives = 170/315 (53%)
Query: 15 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
N TP N + + + + + ++++ LD S+ L++ FSS G + S ++
Sbjct: 16 NGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 75 DG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 133
D + +S G+ +V + + + A+D+LN LI K + +R+ KT N
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTGQGN 131
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
VF+KNLD + ++ L F +G I S V +D G SK +GFV++E A+ A A++ +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G +D++ +VG K +R+ + FE+ MK N+YIKN+ ++DE+ ++
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSK----FEE-MKANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
LF +FG ITS + RD G S+G GFV FST E A A+ EMN K + S+ LYV AQ+K
Sbjct: 242 LFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKK 301
Query: 314 EERRARLQAQFSQMR 328
ER L+ Q+ R
Sbjct: 302 HEREEELRKQYEAAR 316
Score = 220 (82.5 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 51/116 (43%), Positives = 72/116 (62%)
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLV 505
G G + P+ M G R +VGQP P T + AL+ A P+QQ+ +LGE+LYP +
Sbjct: 600 GRGGV-PLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKI 658
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V + +++ PA
Sbjct: 659 QATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
Score = 173 (66.0 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 407 KPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 464
Score = 108 (43.1 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
GKSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+ +
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 467
Score = 95 (38.5 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 78 GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET---VAIKTKFNNV 134
G+SKGFGFV F + + A A+ ++N ++N K ++V RK R + +I+ + NN+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQAR-NNI 472
Score = 47 (21.6 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 16/50 (32%), Positives = 17/50 (34%)
Query: 431 GHAYRYPL---GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
G AY P G Q F G M P M G+P R P P
Sbjct: 484 GQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPFP 533
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 721 (258.9 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 140/257 (54%), Positives = 193/257 (75%)
Query: 72 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 130
+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE + + K
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 156
Query: 131 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 216
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE
Sbjct: 217 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 276
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+
Sbjct: 277 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 335
Query: 310 AQRKEERRARLQAQFSQ 326
AQRKEER+A L Q+ Q
Sbjct: 336 AQRKEERQAHLTNQYMQ 352
Score = 422 (153.6 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 98/239 (41%), Positives = 140/239 (58%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L D
Sbjct: 118 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 177
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 178 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 237
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +
Sbjct: 238 VERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 296
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 297 G-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 354
Score = 339 (124.4 bits), Expect = 2.2e-53, Sum P(3) = 2.2e-53
Identities = 75/166 (45%), Positives = 107/166 (64%)
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 154
Query: 223 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 282
KE N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 155 --AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 206
Query: 283 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 252
Score = 204 (76.9 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 509 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 565
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 566 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 594
Score = 113 (44.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 108 (43.1 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 244 DSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D I + ++ ++S+ ++ V+ D +G SKG GFV F T E A RA+ +MNG ++
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 133
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPV 330
+ ++V + ++ER A L A+ + V
Sbjct: 134 RKVFVGRFKSRKEREAELGARAKEFTNV 161
Score = 107 (42.7 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG 39
+ A RALD +NF + K +RIM+S RDPS+RKSG
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 96 (38.9 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQV 111
A+ A+D +N +I K V
Sbjct: 62 PADAERALDTMNFDVIKGKPV 82
Score = 71 (30.1 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 LN 193
+N
Sbjct: 72 MN 73
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 906 (324.0 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 176/325 (54%), Positives = 244/325 (75%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK + N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR 328
VA+AQRK+ RR++L Q +QMR
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARNQMR 418
Score = 390 (142.3 bits), Expect = 2.5e-45, Sum P(2) = 2.5e-45
Identities = 93/293 (31%), Positives = 156/293 (53%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 95
++ + ++++ +L+ S+ L+D FS G++ S ++ D + S G+ +V F + E+ +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
AI++LN I + + +R+ K N+F+KNL ++ L F +
Sbjct: 94 KAIEQLNYTPIKGRLCRI----MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVF 149
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S+ + D +GKSK FGFV+FE A +A++ALNG + +E YV + ER+
Sbjct: 150 GDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
+L+ ET K NLY+KN+ DE+ +ELF++FG I S + +D G K
Sbjct: 210 QLE--------ET--KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLK 259
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV + E+A +A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 260 GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYR 312
Score = 215 (80.7 bits), Expect = 8.9e-21, Sum P(2) = 8.9e-21
Identities = 61/200 (30%), Positives = 103/200 (51%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 181
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA+E LN R + S+R+ L+ K G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRI----MWSQRDPSLR-----------KKGSG-NIFIKN 132
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 179 (68.1 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 41/129 (31%), Positives = 67/129 (51%)
Query: 6 SAARALDVLNFTPLNNKSI----RIMYSHRDPSIR--KSGTGNIFIKNLDKSIDHKALHD 59
+A A+D LN LN + I + RD + K+ N+++KN++ + +
Sbjct: 178 AAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE 237
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F+ FG I+S + D G+ KGFGFV +E E A A++ LN +N ++++VG +K
Sbjct: 238 LFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 297
Query: 120 QERETVAIK 128
ER V K
Sbjct: 298 NERMHVLKK 306
Score = 106 (42.4 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 563 YESFKKEQ 570
Score = 100 (40.3 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 209 KKSEREQELKGQFEQAMKETVDKFQGL-----NLYIKNLGDSIDDEKLKELFSEFGTITS 263
K +E+ + L Q +Q T + Q + +LY+ +L S+ + L ++FS G+++S
Sbjct: 7 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 66
Query: 264 CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
+V RD + S G +V F+ E +A+ ++N I + + +QR R +
Sbjct: 67 IRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKK 123
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 742 (266.3 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 143/315 (45%), Positives = 218/315 (69%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
A++ N + LN K IR+M+S R P R++G GN+F+KNL +S+ + L D F FGNI+S
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 129
CK+AT G+S+G+GFVQFE +++A AI LN ++ DK+++VG F++K +R V +
Sbjct: 141 CKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR--VKPEE 198
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
K+ N+++KNLD +++ L++ F E+G I S + +D + + + FVNF+N +DA +A
Sbjct: 199 KYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
E +NG KF + YVG+AQKK+EREQ L+ QF++ +E + N+Y+KN+ ++ +E
Sbjct: 259 ETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
+L++ FS+ GTITS K+M D G SKG GFV FSTPEEA A+ +G+M KPLYVA+
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 310 AQRKEERRARLQAQF 324
AQ+KE+R+ +LQ QF
Sbjct: 379 AQKKEDRKMQLQVQF 393
Score = 336 (123.3 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 80/194 (41%), Positives = 112/194 (57%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
NVFVKNL ES T+ L+ +F ++G I S V DGKS+ +GFV FE D A A++ L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N D+E YVGK KK++R +K + +K+ NLY+KNL + ++ L+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDR---VKPE---------EKYT--NLYMKNLDADVSEDLLR 218
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
E F+EFG I S + +D + + +G FV F PE+A RA +NG SK LYV AQ+
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 313 KEERRARLQAQFSQ 326
K ER L+ QF +
Sbjct: 279 KAEREQLLREQFKE 292
Score = 279 (103.3 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 64/175 (36%), Positives = 100/175 (57%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAI 98
T ++++ +L S+ L+D F+ F ++ S ++ D S G+S +G+ F +++ A AI
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+K N L+N K + V +R + A + NVFVKNL ES T+ L+ +F ++G I
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPD----ARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNI 138
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
S V DGKS+ +GFV FE D A A++ LN D+E YVGK KK++R
Sbjct: 139 VSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 178 (67.7 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 53/133 (39%), Positives = 68/133 (51%)
Query: 421 PIMPHQMPPRGHAYRY-PLGRNMQDF-PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 478
P M P + R L RN + P + MLP+ D R G+ M
Sbjct: 453 PPMVANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKK 512
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
+ E Q LLGE L+PLVE+LE A K+TGMLLEMD++E+L LL+SPE L
Sbjct: 513 SIQQRQSETVGMEMQ--LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDL 570
Query: 539 KAKVAEAMEVLRS 551
+V EA EVL+S
Sbjct: 571 AVRVDEAFEVLKS 583
Score = 92 (37.4 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 23/83 (27%), Positives = 47/83 (56%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
+LY+ +L S+ + L + F+EF ++TS ++ +D S G S G+ F + ++A+ A+ +
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
N ++ K + V + R + R
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDAR 107
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 172/320 (53%), Positives = 236/320 (73%)
Query: 11 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
++VLN+ L K +RIM+S RDPS R SG GN+F+KNLD+SID+K L D FS+FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 130
K+A D SG SKG+GFVQF + S A + NG LI ++ + V F+ + + + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRV--- 117
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
F NV+VKNL E+ TD DLK++FGE+G ITSAVVM+DG+GKS+ FGFVNFE A+ A A+E
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFE-QAMKETVDKFQGLNLYIKNLGDSIDDE 249
+NG D++E +VG+AQ+K+ R ++LK +FE + + + +G+NLY+KNL DS+D+
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
KL+ELFSEFGTITSCKVM +GISKG GFV FST EEAS+A+ +MNGKM+ +KP+YV++
Sbjct: 238 KLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 310 AQRKEERRARLQAQFSQMRP 329
AQ KE+ + LQ QF+ P
Sbjct: 298 AQCKEQHKLHLQTQFNNPPP 317
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 159/285 (55%), Positives = 210/285 (73%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE +
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 289
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 347
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 113/299 (37%), Positives = 174/299 (58%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + KE F N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGAR----AKE----FP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 602 (217.0 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 118/217 (54%), Positives = 161/217 (74%)
Query: 112 FVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
FVG F ++ERE + + K F NV++KN E DE LK++FG++G S VM D G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 229
KSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ +
Sbjct: 61 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 120
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 289
++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 121 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 179
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
+A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 180 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 216
Score = 409 (149.0 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 89/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L + F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 142
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 143 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 201
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 202 RKEERQAHLTNQYMQRM 218
Score = 265 (98.3 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 59/126 (46%), Positives = 80/126 (63%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
+VG+ + + ERE EL + KE N+YIKN G+ +DDE+LKELF +FG
Sbjct: 1 FVGRFKSRKEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPAL 50
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+
Sbjct: 51 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 110
Query: 323 QFSQMR 328
+F QM+
Sbjct: 111 KFEQMK 116
Score = 213 (80.0 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 45/93 (48%), Positives = 68/93 (73%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 374 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 430
Query: 533 ESPEALKAKVAEAMEVLRS-----VAQQQANNP 560
ESPE+L++KV EA+ VL++ AQ+ NNP
Sbjct: 431 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 463
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 156/312 (50%), Positives = 221/312 (70%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 119 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 178
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 179 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 237
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+++K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F+
Sbjct: 238 A-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 296
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIK
Sbjct: 297 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIK 356
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 357 NLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRIL 415
Query: 301 VSKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 416 GSKPLSIALAQR 427
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 105/288 (36%), Positives = 168/288 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
A + T N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 244 ---ASEFT-------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 206 (77.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 66/213 (30%), Positives = 109/213 (51%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
K + VA K + +++V +L T++ L + F G + S + RD + + G+
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR-RSLGYA- 112
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NL 237
+ N A A +AL+ FD + GK+ ++ + Q ++ + G+ N+
Sbjct: 113 YVNFLQLADAQKALDTMNFDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGNV 158
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNG
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNG 217
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
K++ ++V + +++R A L+++ S+ V
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAELRSKASEFTNV 250
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 156/312 (50%), Positives = 221/312 (70%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+++K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F+
Sbjct: 180 A-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIK
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 299 NLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRIL 357
Query: 301 VSKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 358 GSKPLSIALAQR 369
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 105/288 (36%), Positives = 168/288 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
A + T N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 186 ---ASEFT-------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 202 (76.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 65/207 (31%), Positives = 107/207 (51%)
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
VA K + +++V +L T++ L + F G + S + RD + + G+ + N
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR-RSLGYA-YVNFLQ 60
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLG 243
A A +AL+ FD + GK+ ++ + Q ++ + G+ N++IKNL
Sbjct: 61 LADAQKALDTMNFDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGNVFIKNLD 106
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK++
Sbjct: 107 KSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGC 165
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPV 330
++V + +++R A L+++ S+ V
Sbjct: 166 KVFVGRFKNRKDREAELRSKASEFTNV 192
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 146/266 (54%), Positives = 195/266 (73%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMR 268
DSIDD+KL++ FS +G ITS K R
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 100/296 (33%), Positives = 169/296 (57%)
Query: 38 SGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 92
SG+G ++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
A+ A+D +N ++ + + + +R+ K+ N+F+KNL++S ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+G I S V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
RE EL + A++ T N+Y+KNL +D++ L++LFS+FG + S KVMRD SG
Sbjct: 179 REAELGAR---ALEFT-------NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
S+ GFV F EEA +A+ MNGK + + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 147/311 (47%), Positives = 213/311 (68%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A +AL+ +NF + KSIR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS
Sbjct: 61 VGDAQKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSP 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG I+S K+ TD G SKG+GFV ++++ +A AI+++NG L+ D +FV F +++RE
Sbjct: 121 FGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDRE 179
Query: 124 TVAIK--TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ +F NV++KN + DE L+ +F +YG S VM+D GKSK FGFV+F++
Sbjct: 180 AELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDS 239
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
A AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + Q LYIKN
Sbjct: 240 HKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKN 299
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE L++ FS FG+I KVM++ +G SKG G + F +PE A++A+AEMNG+++
Sbjct: 300 LDDTIDDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILG 358
Query: 302 SKPLYVAVAQR 312
SKPL +A+ Q+
Sbjct: 359 SKPLNIALGQK 369
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 105/293 (35%), Positives = 170/293 (58%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 95
K ++++ +L + + L F++ G +LS +I D S +S G+G+V F AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
A++ +N LI K + L +R+ K+ NVF+KNLD+S ++ L + F +
Sbjct: 66 KALETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S+ VM D +G SK +GFV++++ A +A+E +NGK D +V + + + +RE
Sbjct: 122 GKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
EL+ E+ + T N+YIKN GD +DDE L+ +FS++G S KVM+D SG SK
Sbjct: 181 ELR---EKPAEFT-------NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK 230
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV+F + + A A+ +MNG+ I + ++V AQ+K ER+A L+ F QM+
Sbjct: 231 RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMK 283
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 152/313 (48%), Positives = 212/313 (67%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQRK 313
SKPL+V + Q +
Sbjct: 367 GSKPLHVTLGQAR 379
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 103/287 (35%), Positives = 164/287 (57%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 101
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S
Sbjct: 80 NFDLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 191
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV
Sbjct: 192 ------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 245
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
Score = 196 (74.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 48/141 (34%), Positives = 80/141 (56%)
Query: 4 LSSAARALDVLNFTPLNNKSI---RIMY-SHRDPSIR---KSGTGNIFIKNLDKSIDHKA 56
L++A RA+ +N LNN+ + R + R +R ++ N+F+KN+ ID +
Sbjct: 155 LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEK 214
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
L + F +G S K+ D SG+SKGFGFV++E E+AQ A+ L+G I+ K ++VG
Sbjct: 215 LKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
Query: 117 LRKQERETVAIKTKFNNVFVK 137
+K ER ++ +F + +K
Sbjct: 275 QKKIER-LAELRRRFERLRLK 294
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 565 (203.9 bits), Expect = 2.7e-70, Sum P(2) = 2.7e-70
Identities = 115/229 (50%), Positives = 155/229 (67%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSGTGNIF+KNLDKSID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NG+ + K V+VG F++K ER
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN +S T+ L+++F YG ITS +V D K++ F F+N+ +A+
Sbjct: 187 TN--DTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDN--KNRKFCFINYADAE 242
Query: 184 DAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 231
A A++ LNGKK DD + KK E G Q DK
Sbjct: 243 SAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 328 (120.5 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 72/153 (47%), Positives = 97/153 (63%)
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+ NA A K A + YVG Q ++ R LK +F+ E +K QG+NL
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
YIKNL D IDD L+ELF FGTITS KVMRD SKG GFV F++ EEA++A+ EM+
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHL 512
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
K+I KPLYV +A+++E+R +RLQ +F +M P+
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRF-RMHPI 544
Score = 258 (95.9 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 70/200 (35%), Positives = 104/200 (52%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K+ N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +
Sbjct: 100 KSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKE 159
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+E +NG + + YVG KKSER A +T KF NLY+KN DS+
Sbjct: 160 AIEKVNGVQLGSKNVYVGPFIKKSER----------ATNDT--KFT--NLYVKNFPDSVT 205
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLY 306
+ L++LF+ +G ITS V D ++ F+ ++ E A A+ +NGK I +
Sbjct: 206 ETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKITDDGQID 263
Query: 307 VAVAQRKEERRARLQAQFSQ 326
+KEE A +Q
Sbjct: 264 ETYDPKKEEATASTSGAANQ 283
Score = 249 (92.7 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 56/175 (32%), Positives = 97/175 (55%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L++ + L++ F++ G++ S ++ D + +S G+ +V + N A+ A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + L R+ K+ N+FVKNLD+S ++ L F +G I
Sbjct: 75 DTLNYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
S V D GKSK +GFV++E+ + A +A+E +NG + + YVG KKSER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSER 185
Score = 218 (81.8 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 63/196 (32%), Positives = 103/196 (52%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN Y K + + + + +++++ G N+++KNL SID++ L
Sbjct: 77 LN---------YTNI---KGQPARLMWSHRDPSLRKSGT---G-NIFVKNLDKSIDNKAL 120
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 312 RKEERRARLQAQFSQM 327
+K ER A +F+ +
Sbjct: 181 KKSER-ATNDTKFTNL 195
Score = 188 (71.2 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 56/189 (29%), Positives = 99/189 (52%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 97
+ T N + + SI+ L++ ++ GN S + SG S +++ +A +
Sbjct: 355 TNTSNTTTGSSNNSIN---LNENNNTAGNNNSTN-NNNNSGSSMNNAGSAKKDETAASDC 410
Query: 98 IDKLNGMLINDKQVFVG-HFLRKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIF 152
D N + + Q H + K + + + ++ K N+++KNLD+ D L+++F
Sbjct: 411 ADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELF 470
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+GTITSA VMRD +SK FGFV F + ++A KAV ++ K + + YVG A+K+ +
Sbjct: 471 EPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQ 530
Query: 213 REQELKGQF 221
R L+ +F
Sbjct: 531 RLSRLQQRF 539
Score = 175 (66.7 bits), Expect = 2.7e-70, Sum P(2) = 2.7e-70
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFP------FDMGAGSMLPVPVDMGAGIP--RRDASVGQ 474
M HQ P+G + + MQ P F A + + +P + + +V
Sbjct: 737 MNHQAQPQGAQAQQKNPQQMQQVPQGNNFKFTAQARNRMELPNKNANKVNTMNNNMNVNF 796
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
T + ALA+A P Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+
Sbjct: 797 NNNSTLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLEN 856
Query: 535 PEALKAKVAEAMEVLR 550
E LK K+ EA+ VL+
Sbjct: 857 EEQLKKKIDEALVVLQ 872
Score = 132 (51.5 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 39/159 (24%), Positives = 74/159 (46%)
Query: 6 SAARALDVLNFTPLNNKSIRI--MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
SA A++ +N L +K++ + + + + N+++KN S+ L F+
Sbjct: 156 SAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNP 215
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
+G I S + D +++ F F+ + + ESA+NA+D LNG I D + K+E
Sbjct: 216 YGEITSMIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEA 273
Query: 124 TVAIKTKFNNVFVKNLDEST-TDEDLKKIFGEYGTITSA 161
T + N + D++ D++ K E G ++A
Sbjct: 274 TASTSGAANQTTGTDADKTDKNDKNNKADKNEKGDSSNA 312
Score = 89 (36.4 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ +L + + + L E+F+ G ++S +V RD + S G +V + +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I +P + + R R
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLR 99
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 565 (203.9 bits), Expect = 2.7e-70, Sum P(2) = 2.7e-70
Identities = 115/229 (50%), Positives = 155/229 (67%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSGTGNIF+KNLDKSID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NG+ + K V+VG F++K ER
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN +S T+ L+++F YG ITS +V D K++ F F+N+ +A+
Sbjct: 187 TN--DTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDN--KNRKFCFINYADAE 242
Query: 184 DAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 231
A A++ LNGKK DD + KK E G Q DK
Sbjct: 243 SAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 328 (120.5 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 72/153 (47%), Positives = 97/153 (63%)
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+ NA A K A + YVG Q ++ R LK +F+ E +K QG+NL
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
YIKNL D IDD L+ELF FGTITS KVMRD SKG GFV F++ EEA++A+ EM+
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHL 512
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
K+I KPLYV +A+++E+R +RLQ +F +M P+
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRF-RMHPI 544
Score = 258 (95.9 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 70/200 (35%), Positives = 104/200 (52%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K+ N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +
Sbjct: 100 KSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKE 159
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+E +NG + + YVG KKSER A +T KF NLY+KN DS+
Sbjct: 160 AIEKVNGVQLGSKNVYVGPFIKKSER----------ATNDT--KFT--NLYVKNFPDSVT 205
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLY 306
+ L++LF+ +G ITS V D ++ F+ ++ E A A+ +NGK I +
Sbjct: 206 ETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKITDDGQID 263
Query: 307 VAVAQRKEERRARLQAQFSQ 326
+KEE A +Q
Sbjct: 264 ETYDPKKEEATASTSGAANQ 283
Score = 249 (92.7 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 56/175 (32%), Positives = 97/175 (55%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L++ + L++ F++ G++ S ++ D + +S G+ +V + N A+ A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + L R+ K+ N+FVKNLD+S ++ L F +G I
Sbjct: 75 DTLNYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
S V D GKSK +GFV++E+ + A +A+E +NG + + YVG KKSER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSER 185
Score = 218 (81.8 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 63/196 (32%), Positives = 103/196 (52%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN Y K + + + + +++++ G N+++KNL SID++ L
Sbjct: 77 LN---------YTNI---KGQPARLMWSHRDPSLRKSGT---G-NIFVKNLDKSIDNKAL 120
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 312 RKEERRARLQAQFSQM 327
+K ER A +F+ +
Sbjct: 181 KKSER-ATNDTKFTNL 195
Score = 188 (71.2 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 56/189 (29%), Positives = 99/189 (52%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 97
+ T N + + SI+ L++ ++ GN S + SG S +++ +A +
Sbjct: 355 TNTSNTTTGSSNNSIN---LNENNNTAGNNNSTN-NNNNSGSSMNNAGSAKKDETAASDC 410
Query: 98 IDKLNGMLINDKQVFVG-HFLRKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIF 152
D N + + Q H + K + + + ++ K N+++KNLD+ D L+++F
Sbjct: 411 ADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELF 470
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+GTITSA VMRD +SK FGFV F + ++A KAV ++ K + + YVG A+K+ +
Sbjct: 471 EPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQ 530
Query: 213 REQELKGQF 221
R L+ +F
Sbjct: 531 RLSRLQQRF 539
Score = 175 (66.7 bits), Expect = 2.7e-70, Sum P(2) = 2.7e-70
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFP------FDMGAGSMLPVPVDMGAGIP--RRDASVGQ 474
M HQ P+G + + MQ P F A + + +P + + +V
Sbjct: 737 MNHQAQPQGAQAQQKNPQQMQQVPQGNNFKFTAQARNRMELPNKNANKVNTMNNNMNVNF 796
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
T + ALA+A P Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+
Sbjct: 797 NNNSTLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLEN 856
Query: 535 PEALKAKVAEAMEVLR 550
E LK K+ EA+ VL+
Sbjct: 857 EEQLKKKIDEALVVLQ 872
Score = 132 (51.5 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 39/159 (24%), Positives = 74/159 (46%)
Query: 6 SAARALDVLNFTPLNNKSIRI--MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
SA A++ +N L +K++ + + + + N+++KN S+ L F+
Sbjct: 156 SAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNP 215
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
+G I S + D +++ F F+ + + ESA+NA+D LNG I D + K+E
Sbjct: 216 YGEITSMIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEA 273
Query: 124 TVAIKTKFNNVFVKNLDEST-TDEDLKKIFGEYGTITSA 161
T + N + D++ D++ K E G ++A
Sbjct: 274 TASTSGAANQTTGTDADKTDKNDKNNKADKNEKGDSSNA 312
Score = 89 (36.4 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ +L + + + L E+F+ G ++S +V RD + S G +V + +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I +P + + R R
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLR 99
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 151/312 (48%), Positives = 209/312 (66%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA 188
Query: 125 -VAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
V + K F NVFVKN + D+ LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 189 EVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYET 248
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIKN
Sbjct: 249 HEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKN 308
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ++IDDEKLKE FS FG+I+ KVM + G KG G + FS+ EEA++A+ EMNG+++
Sbjct: 309 LDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMNGRIVG 367
Query: 302 SKPLYVAVAQRK 313
SKPL V + Q +
Sbjct: 368 SKPLQVTLGQAR 379
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 103/287 (35%), Positives = 165/287 (57%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 101
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G+I S
Sbjct: 80 NFDLINGKPF---RLMWSQPDDRLR-KSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSC 135
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 191
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
T DK N+++KN GD +DD+KLKELFSE+G S KV+RD SG SKG GFV
Sbjct: 192 ------TRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVR 245
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
Score = 197 (74.4 bits), Expect = 8.6e-13, P = 8.6e-13
Identities = 49/141 (34%), Positives = 79/141 (56%)
Query: 4 LSSAARALDVLNFTPLNNKSI---RIMY-SHRDPSIR---KSGTGNIFIKNLDKSIDHKA 56
L++A RA+ +N LNN+ + R + R +R K+ N+F+KN +D
Sbjct: 155 LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDK 214
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
L + FS +G S K+ D SG+SKGFGFV++E E+AQ A+ L+G I+ K ++VG
Sbjct: 215 LKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
Query: 117 LRKQERETVAIKTKFNNVFVK 137
+K ER ++ +F + +K
Sbjct: 275 QKKIER-LAELRRRFERLRLK 294
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 692 (248.7 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 147/327 (44%), Positives = 215/327 (65%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRK---SGTGNIFIKNLDKSIDHKALHDTFS 62
SA+ A+ LN + L K++RIM+S RD + R+ +G N+++KNLD SI L F
Sbjct: 74 SASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC 133
Query: 63 SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
FG+ILSCK+ + +GQSKGFGFVQF+ ++SA +A L+G ++ K++FV F+ K ER
Sbjct: 134 PFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDER 192
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+A NV+VKNL E+ TD+ L +F +YGT++S VVMRDG G+S+ FGFVNF N
Sbjct: 193 AAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNP 252
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KA+E+L G + ++ +VGKA KK ER + LK +F + + NLY+KNL
Sbjct: 253 ENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPN-MRWSNLYVKNL 311
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+S+++ +L+E+F +G I S KVM +G SKG GFV FS EE+ +A +NG ++
Sbjct: 312 SESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDG 371
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRP 329
KP+ V VA+RKE+R RLQ Q+ Q +P
Sbjct: 372 KPIVVRVAERKEDRIKRLQ-QYFQAQP 397
Score = 385 (140.6 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 99/288 (34%), Positives = 158/288 (54%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
G++++ +L + K L D FS ++S + + +G+S + ++ F++ SA NA+
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 100 KLNGMLINDKQVFVGHFLRK--QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+LN + K + + R R T +T F N++VKNLD S T L+++F +G+
Sbjct: 81 RLNHSDLKGKAMRIMWSQRDLAYRRRT---RTGFANLYVKNLDSSITSSCLERMFCPFGS 137
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V+ + +G+SK FGFV F+ A A AL+G ++ +V K K ER
Sbjct: 138 ILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERA--- 193
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
AM D N+Y+KNL +++ D+ L LFS++GT++S VMRD G S+G
Sbjct: 194 ------AMAGNQDS---TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGF 244
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325
GFV F PE A +A+ + G + SK L+V A +K+ERR L+ +FS
Sbjct: 245 GFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS 292
Score = 236 (88.1 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 64/191 (33%), Positives = 103/191 (53%)
Query: 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAK 187
++F +++V +L T++DL F + S + R+ GKS C+ ++NF++ A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+ LN D + GKA + +++L + + T F NLY+KNL SI
Sbjct: 78 AMTRLN---HSDLK---GKAMRIMWSQRDLAYR-----RRTRTGFA--NLYVKNLDSSIT 124
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
L+ +F FG+I SCKV+ + +G SKG GFV F T + A A + ++G M+ K L+V
Sbjct: 125 SSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 308 AVAQRKEERRA 318
A K+ER A
Sbjct: 184 AKFINKDERAA 194
Score = 37 (18.1 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 312 RKEERRARLQAQFS 325
RKEERR L + S
Sbjct: 511 RKEERRLTLSGKLS 524
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 151/313 (48%), Positives = 208/313 (66%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN DE LK+IF YG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK + + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ E+A++A+ EMNG+ +
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMNGRTV 366
Query: 301 VSKPLYVAVAQRK 313
SKPL+V + Q +
Sbjct: 367 GSKPLHVTLGQAR 379
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 100/287 (34%), Positives = 163/287 (56%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 101
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S
Sbjct: 80 NFDLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 191
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
T D+ N+++KN G+ +DDEKLKE+FS +G S KV+RD SG SKG GFV
Sbjct: 192 ------TRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVR 245
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 246 YETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLR 292
Score = 202 (76.2 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 49/141 (34%), Positives = 80/141 (56%)
Query: 4 LSSAARALDVLNFTPLNNKSI---RIMY-SHRDPSIR---KSGTGNIFIKNLDKSIDHKA 56
L++A RA+ +N LNN+ + R + R +R ++ N+F+KN +D +
Sbjct: 155 LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEK 214
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
L + FS +G S K+ D SG+SKGFGFV++E E+AQ A+ L+G IN K ++VG
Sbjct: 215 LKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRA 274
Query: 117 LRKQERETVAIKTKFNNVFVK 137
+K ER ++ +F + +K
Sbjct: 275 QKKIER-LAELRRRFERLRLK 294
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 152/313 (48%), Positives = 209/313 (66%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE LKK+F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + VG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEAS+A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVNEMNGRVV 366
Query: 301 VSKPLYVAVAQRK 313
SK L+V + Q +
Sbjct: 367 GSKTLHVTLGQAR 379
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 101/287 (35%), Positives = 163/287 (56%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 101
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S
Sbjct: 80 NFDLINGKPF---RLMWSQPDDHLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 191
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
T D+ N+++KN GD IDDEKLK+LFSE+G S KV+RD +G SKG GFV
Sbjct: 192 ------TRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVR 245
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ T E A +A+ E++GK I K L V AQ+K ER A L+ +F +++
Sbjct: 246 YETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLK 292
Score = 191 (72.3 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 48/142 (33%), Positives = 80/142 (56%)
Query: 4 LSSAARALDVLNFTPLNNKSI---RIMY-SHRDPSIR---KSGTGNIFIKNLDKSIDHKA 56
L++A RA+ +N LNN+ + R + R +R ++ N+F+KN ID +
Sbjct: 155 LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEK 214
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
L FS +G S K+ D +G+SKGFGFV++E E+AQ A+ +L+G I+ K + VG
Sbjct: 215 LKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRA 274
Query: 117 LRKQERETVAIKTKFNNVFVKN 138
+K ER ++ +F + +K+
Sbjct: 275 QKKIER-LAELRRRFERLKLKD 295
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 139/257 (54%), Positives = 190/257 (73%)
Query: 72 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 130
+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE + + K
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 60
Query: 131 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
F NV++KN E DE LK +FG S VM D GKSK FGFV+FE +DA KAV
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 117
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE
Sbjct: 118 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 177
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+
Sbjct: 178 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 236
Query: 310 AQRKEERRARLQAQFSQ 326
AQRKEER+A L Q+ Q
Sbjct: 237 AQRKEERQAHLTNQYMQ 253
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 97/239 (40%), Positives = 139/239 (58%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L D
Sbjct: 22 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 81
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F G LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 82 LF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 138
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +
Sbjct: 139 VERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 197
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 198 G-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 255
Score = 319 (117.4 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 74/166 (44%), Positives = 105/166 (63%)
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 58
Query: 223 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 282
KE N+YIKN G+ +DDE+LK+LF G S KVM D SG SKG GFV+F
Sbjct: 59 --AKEFT------NVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSF 107
Query: 283 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 108 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 153
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 428 (155.7 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 84/140 (60%), Positives = 111/140 (79%)
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 307 VAVAQRKEERRARLQAQFSQ 326
VA+AQRKEER+A L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 238 (88.8 bits), Expect = 7.6e-35, Sum P(2) = 7.6e-35
Identities = 55/140 (39%), Positives = 84/140 (60%)
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDEST 143
A++++NG ++ K +FVG +K ER+ +K KF N+++KNLD++
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQA-ELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
DE L+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + Y
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 204 VGKAQKKSEREQELKGQFEQ 223
V AQ+K ER+ L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 207 (77.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 293 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 350
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 564
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 351 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 410
Query: 565 AS 566
A+
Sbjct: 411 AA 412
Score = 183 (69.5 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 36/82 (43%), Positives = 54/82 (65%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 108
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG ++ K ++V RK+ER+
Sbjct: 109 NGRIVGSKPLYVALAQRKEERK 130
Score = 89 (36.4 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+A+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 39
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 118/217 (54%), Positives = 160/217 (73%)
Query: 112 FVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
FVG F ++ERE + + K F NV++KN E DE LK +FG++G S VM D G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 229
KSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ +
Sbjct: 62 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 121
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 289
++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 180
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
+A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 181 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 217
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 143
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 144 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 202
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 203 RKEERQAHLTNQYMQRM 219
Score = 262 (97.3 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
+VG+ + + ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG
Sbjct: 2 FVGRFKSRKEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPAL 51
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+
Sbjct: 52 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 111
Query: 323 QFSQMR 328
+F QM+
Sbjct: 112 KFEQMK 117
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 549 (198.3 bits), Expect = 9.8e-58, Sum P(2) = 9.8e-58
Identities = 126/315 (40%), Positives = 187/315 (59%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LN+T ++ K RIM+S+RDP+ RK+ GNIF+KNL+K +D+ L+DTFSSFGN
Sbjct: 240 AERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGN 299
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ + G SKG+G+V FE +SA+ AI+K+NG LI K + V F+ K ER V
Sbjct: 300 ILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVE 358
Query: 127 IKTKFNNVFVKNLDESTTDEDLKK-IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
N VF +N DES T E L++ + +G I S ++ D +GKSK G V F+N +DA
Sbjct: 359 -----NKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDA 413
Query: 186 AKA--------VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
K + ++G + K +K + E+ E K L+L
Sbjct: 414 QKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER-FTEYRKKTTDLSL 472
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+I N+ +SID + +KE F++ GTI K+++D + +KG GF++FS +EA +AL +NG
Sbjct: 473 FINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNG 532
Query: 298 KMIVSKPLYVAVAQR 312
SK + V+ + +
Sbjct: 533 FTFGSKQIQVSFSNK 547
Score = 197 (74.4 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 77/283 (27%), Positives = 129/283 (45%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGN--ILSCKIATDGSG-QSKGFGFVQFENKESAQNAI 98
++++ +L ++ L++ FS G I S + D + +S G+ +V F N A+ A+
Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN L++ K + R + KT N+FVKNL++ + L F +G I
Sbjct: 245 DTLNYTLVHGKPCRIMWSYRDPTKR----KTNVGNIFVKNLEKGVDNAMLYDTFSSFGNI 300
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ-EL 217
S V + G SK +G+V+FE D A KA+E +NG + V + K ER + E
Sbjct: 301 LSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVEN 359
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS--EFGT-ITSCKVMRDPSGIS 274
K F A E++ + L + N I+ LK + G + K D I
Sbjct: 360 KVFFRNA-DESIT-IEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEER 316
SG + ST + + ++ G + ++ KP+ + + K ER
Sbjct: 418 TESGALIISTID-GTTTVSSNGGTIEINGKPITIDRIKSKVER 459
Score = 161 (61.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 40/127 (31%), Positives = 69/127 (54%)
Query: 106 INDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDESTTDEDL-KKIFGEYGTITSAVV 163
IN K + + K ER T KT ++F+ N+DES D DL K+ F ++GTI +
Sbjct: 443 INGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESI-DRDLIKEEFAKHGTIIGIKI 501
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFE 222
++D + ++K FGF++F +A KA+++LNG F ++ V + K + + +L G
Sbjct: 502 VQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNGNST 561
Query: 223 QAMKETV 229
+ K +
Sbjct: 562 KITKNII 568
Score = 68 (29.0 bits), Expect = 9.8e-58, Sum P(2) = 9.8e-58
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 477 PITALSTA-LANASPEQQRTLLGESLYPLVEQLER---DAAAKVTGMLLEM--DQTEVLH 530
P T ++ + NA+ E+ LG +Y LV + AAK+ GM+++ + E+
Sbjct: 731 PKTTITLEFITNATAEEATETLGSEVYNLVLAKYNNNIELAAKIAGMIVDAVPEHKELFE 790
Query: 531 LLESPEALKAKVAEAMEVLRSVAQQ 555
++ + + +++K+ EA +L Q+
Sbjct: 791 IISNGQ-IQSKIEEAKSLLDQPDQE 814
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 107/192 (55%), Positives = 140/192 (72%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE +
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKK 196
A KAV+ +NGK+
Sbjct: 244 AQKAVDEMNGKE 255
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 101/269 (37%), Positives = 156/269 (57%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + KE F N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGAR----AKE----FP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGK 298
SG SKG GFV+F E+A +A+ EMNGK
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 176 (67.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 37/88 (42%), Positives = 57/88 (64%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N+++KNL SI+++ L + S FG I SC V+ D +G SKG GFV F T E A RA+ +M
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQ 323
NG ++ + ++V + ++ER A L A+
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR 186
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 102/217 (47%), Positives = 145/217 (66%)
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYG 156
+NG+ +N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 59
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
S V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER E
Sbjct: 60 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAE 119
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L+ +FE+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG
Sbjct: 120 LRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKG 178
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
G V FS+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 179 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Score = 294 (108.6 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 75/218 (34%), Positives = 123/218 (56%)
Query: 14 LNFTPLNNKSI---RIMY-SHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
+N LNN+ + R + R +R ++ N+F+KN+ ID + L + F +G
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 60
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---- 122
S K+ D SG+SKGFGFV++E E+AQ A+ L+G I+ K ++VG +K ER
Sbjct: 61 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 120
Query: 123 ----ETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 174
E + +K K +++KNLDE+ DE LK+ F +G+I+ A VM + G+ K F
Sbjct: 121 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGF 179
Query: 175 GFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKK 210
G V F + ++A KAV+ +NG+ + +V G+A+++
Sbjct: 180 GVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 217
Score = 279 (103.3 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 61/137 (44%), Positives = 88/137 (64%)
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD IDDEKL
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDIDDEKL 51
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
KELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV AQ
Sbjct: 52 KELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 111
Query: 312 RKEERRARLQAQFSQMR 328
+K ER A L+ +F ++R
Sbjct: 112 KKIERLAELRRRFERLR 128
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 311 (114.5 bits), Expect = 5.4e-45, Sum P(2) = 5.4e-45
Identities = 64/117 (54%), Positives = 87/117 (74%)
Query: 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 267
QKK E + ELK +FEQ ++ + ++QG+NLY+KNL DSID E+L++ FS FGTITS KVM
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSID-ERLRKQFSPFGTITSAKVM 59
Query: 268 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
+ G SK GF+ FS+ EEA +A+ EMNGK++ +KPLYVA+AQ KEE + L Q+
Sbjct: 60 ME-GGHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQY 115
Score = 188 (71.2 bits), Expect = 5.4e-45, Sum P(2) = 5.4e-45
Identities = 39/93 (41%), Positives = 65/93 (69%)
Query: 465 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 524
+P+ + G +TA + LA+A P++Q+ +LGE L+PL++ L A K+TGMLLE+D
Sbjct: 234 VPQYKYAAGGQEHLTA--SMLASAPPQEQKQMLGEWLFPLIQVLHPSPAGKITGMLLEID 291
Query: 525 QTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+E+LH+L SPE+L +KV EA+ +L++ ++A
Sbjct: 292 NSELLHMLASPESLHSKVDEAVALLQAHQVKEA 324
Score = 188 (71.2 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 44/93 (47%), Positives = 58/93 (62%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNLD+S DE L+K F +GTITSA VM +G G SK FGF+ F + ++A KAV +
Sbjct: 29 NLYVKNLDDSI-DERLRKQFSPFGTITSAKVMMEG-GHSKRFGFICFSSHEEAFKAVMEM 86
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
NGK + YV AQ K E + L Q+ M
Sbjct: 87 NGKIVATKPLYVALAQHKEECQTHLTNQYMHRM 119
Score = 163 (62.4 bits), Expect = 7.7e-25, Sum P(2) = 7.7e-25
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 90
+D R G N+++KNLD SID + L FS FG I S K+ +G G SK FGF+ F +
Sbjct: 19 QDKITRYQGV-NLYVKNLDDSIDER-LRKQFSPFGTITSAKVMMEG-GHSKRFGFICFSS 75
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
E A A+ ++NG ++ K ++V K+E +T
Sbjct: 76 HEEAFKAVMEMNGKIVATKPLYVALAQHKEECQT 109
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/189 (46%), Positives = 136/189 (71%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 99
+G I+IKNL++SID+KA++DTFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+
Sbjct: 112 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 171
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
K+NGML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG IT
Sbjct: 172 KVNGMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRIT 230
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELK 218
S +M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+
Sbjct: 231 SHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 290
Query: 219 GQFEQAMKE 227
+ E+ ++
Sbjct: 291 RKLEERKRQ 299
Score = 278 (102.9 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 64/196 (32%), Positives = 111/196 (56%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 313 KEERRARLQAQFSQMR 328
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 396 (144.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 79/154 (51%), Positives = 109/154 (70%)
Query: 72 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 130
+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE + K K
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101
Query: 131 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E +DA KAV
Sbjct: 102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 161
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
E +NGK+ + +VG+AQKK ER+ ELK +FEQ
Sbjct: 162 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
Score = 354 (129.7 bits), Expect = 4.0e-35, Sum P(2) = 4.0e-35
Identities = 77/167 (46%), Positives = 111/167 (66%)
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 42 IVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK- 99
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV+
Sbjct: 100 ---AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 150
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 151 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 197
Score = 210 (79.0 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 46/135 (34%), Positives = 78/135 (57%)
Query: 6 SAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHD 59
+A +A++ +N LN++ + + + R + G N++IKN + +D ++L +
Sbjct: 63 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 122
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
FS FG LS K+ D +G+SKGFGFV +E E A A++++NG I+ K +FVG +K
Sbjct: 123 LFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 182
Query: 120 QERETVAIKTKFNNV 134
ER+ +K KF +
Sbjct: 183 VERQA-ELKRKFEQL 196
Score = 44 (20.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 64 FGNILSCK 71
FGNILSCK
Sbjct: 2 FGNILSCK 9
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 74/142 (52%), Positives = 102/142 (71%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ +NF +N + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID LNGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + K+ D+ + DE
Sbjct: 175 GAWARQSTSADFKDFDDDSDDE 196
Score = 232 (86.7 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 63/211 (29%), Positives = 111/211 (52%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A+
Sbjct: 1 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 60
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ +N +IN + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 61 ETMNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G K +GFV+F+ + A +A++ALNG + R+ +VG+ + ERE E +
Sbjct: 117 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE-R 174
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
G + A + T F K+ D DDE
Sbjct: 175 GAW--ARQSTSADF-------KDFDDDSDDE 196
Score = 198 (74.8 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 60/187 (32%), Positives = 94/187 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 MNFDVINGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ +NG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 74/142 (52%), Positives = 102/142 (71%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 224 (83.9 bits), Expect = 8.9e-18, P = 8.9e-18
Identities = 56/193 (29%), Positives = 101/193 (52%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 178 ARQSTSADVKDFE 190
Score = 202 (76.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 74/142 (52%), Positives = 102/142 (71%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 224 (83.9 bits), Expect = 8.9e-18, P = 8.9e-18
Identities = 56/193 (29%), Positives = 101/193 (52%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 178 ARQSTSADVKDFE 190
Score = 202 (76.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 74/142 (52%), Positives = 102/142 (71%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 222 (83.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 55/193 (28%), Positives = 101/193 (52%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 178 ARQSTSADVKDFE 190
Score = 200 (75.5 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 74/142 (52%), Positives = 102/142 (71%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 220 (82.5 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 55/193 (28%), Positives = 100/193 (51%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 178 ARQSTSADVKDFE 190
Score = 201 (75.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 69/107 (64%), Positives = 88/107 (82%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 7 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 66
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++V
Sbjct: 67 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 160 (61.4 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 39/114 (34%), Positives = 63/114 (55%)
Query: 88 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 147
F+ A+ A+D +N +I K + + +R+ K+ NVF+KNLD+S ++
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 58
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
L F +G I S V+ D +G SK + FV+FE + A KA+E +NG +DR+
Sbjct: 59 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRK 111
Score = 159 (61.0 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 44 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 102
Query: 296 NGKMI 300
NG ++
Sbjct: 103 NGMLL 107
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 353 (129.3 bits), Expect = 3.8e-32, P = 3.8e-32
Identities = 67/121 (55%), Positives = 91/121 (75%)
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
G+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 265 K 265
K
Sbjct: 122 K 122
Score = 255 (94.8 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 57/118 (48%), Positives = 73/118 (61%)
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG
Sbjct: 5 LKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 64
Query: 117 LRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSA 161
+K ER+T +K KF N++VKNLD+ DE L+K F +GTITSA
Sbjct: 65 QKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Score = 207 (77.9 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 42/81 (51%), Positives = 56/81 (69%)
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 308 AVAQRKEERRARLQAQFSQMR 328
AQ+K ER+ L+ +F QM+
Sbjct: 62 GRAQKKVERQTELKRKFEQMK 82
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 350 (128.3 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 69/111 (62%), Positives = 90/111 (81%)
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SK
Sbjct: 2 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 60
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 61 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 111
Score = 206 (77.6 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 42/91 (46%), Positives = 61/91 (67%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+++KNLD++ DE L+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
NG+ + YV AQ+K ER+ L Q+ Q
Sbjct: 81 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 111
Score = 183 (69.5 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 36/82 (43%), Positives = 54/82 (65%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG ++ K ++V RK+ER+
Sbjct: 81 NGRIVGSKPLYVALAQRKEERK 102
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 272 (100.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 66/212 (31%), Positives = 117/212 (55%)
Query: 20 NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ 79
NN + ++++ + + T N+F+K+L + + L + FS +G +LS K+ D G
Sbjct: 89 NNNNNNNSVNNKELELERDQT-NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGN 147
Query: 80 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF--NNVFVK 137
S G+GFV+F + + + AI++L+G +K++ R T + +K+ NN+F+K
Sbjct: 148 SYGYGFVRFSSPQESAAAIEELDGYQYQNKKLLC----RLSNLYT-NLNSKYPSNNLFIK 202
Query: 138 NLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 197
L TD+ L+K+F +G I VM D +G+SK GFV F + DA+KA++A+NG +
Sbjct: 203 PLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRI 262
Query: 198 DDREWYVGKAQKKSEREQELKGQFEQAMKETV 229
+ Y K ++ EQ+ K +Q +T+
Sbjct: 263 NKDSGYP-LVVKYADTEQQ-KISRKQRKMQTI 292
Score = 268 (99.4 bits), Expect = 7.6e-20, P = 7.6e-20
Identities = 68/192 (35%), Positives = 104/192 (54%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
NVFVK+L DEDL+ +F +YG + S+ VM D G S +GFV F + ++A A+E L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+G ++ +++ L + K+ NL+IK L + D++L+
Sbjct: 170 DGYQYQNKK---------------LLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLR 214
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK---PLYVAV 309
+LF FG I CKVM D +G SK +GFV FS+ +AS+A+ MNG I PL V
Sbjct: 215 KLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKY 274
Query: 310 AQRKEERRARLQ 321
A ++++ +R Q
Sbjct: 275 ADTEQQKISRKQ 286
Score = 140 (54.3 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL++ +L +DD L +LFS+FG + S +V+ D +G +KG GFV F +EA + E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 295 MNGKMIVSKPLYVAVAQRKE 314
MNG I SK L V + KE
Sbjct: 830 MNGFRIGSKFLKVKLKNEKE 849
Score = 124 (48.7 bits), Expect = 0.00042, P = 0.00042
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 4 LSSAARALDVLNFTPLNN-KSIRIMYSHRDPSIRKSGTG------NIFIKNLDKSIDHKA 56
L++ N T L N +S+ + + SG G N+F+ +L +D
Sbjct: 725 LTTTTTTTTTTNTTNLTNLESLNPLSASSSSITSNSGGGKHTNDTNLFVFHLPPFVDDSY 784
Query: 57 LHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115
L FS FG + S ++ TD +G++KG+GFV+F + A ++NG I K F+
Sbjct: 785 LFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEMNGFRIGSK--FLKV 842
Query: 116 FLRKQERETV 125
L K E+E++
Sbjct: 843 KL-KNEKESM 851
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 317 (116.6 bits), Expect = 5.3e-28, P = 5.3e-28
Identities = 60/91 (65%), Positives = 75/91 (82%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 18 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 77
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQ 95
GNILSCK+ D +G SKG+GFV FE +E+A+
Sbjct: 78 GNILSCKVVCDENG-SKGYGFVHFETQEAAE 107
Score = 154 (59.3 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 48/123 (39%), Positives = 68/123 (55%)
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKE 227
+S + +VNF+ DA +A++ +N FD + GK + S+R+ L+ K
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMN---FDVIK---GKPVRIMWSQRDPSLR-------KS 51
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287
V N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E
Sbjct: 52 GVG-----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEA 105
Query: 288 ASR 290
A R
Sbjct: 106 AER 108
Score = 148 (57.2 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 79 QSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKN 138
+S G+ +V F+ A+ A+D +N +I K V + +R+ K+ N+F+KN
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKN 60
Query: 139 LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
LD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 264 (98.0 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 66/200 (33%), Positives = 102/200 (51%)
Query: 128 KTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K K N + ++NL D++LK+IF ++GT+ + DGK K F FV F+ +A
Sbjct: 119 KKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAE 178
Query: 187 KAVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN------ 236
KA A+N K DR +W + + E + E+ + +KF+G+
Sbjct: 179 KARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKS 236
Query: 237 -LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
L I+NL +++ LK++FSEFGT+ K+ P G +G FV F EA +AL M
Sbjct: 237 RLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAM 296
Query: 296 NGKMIVSKPLYV--AVAQRK 313
NGK I + + V A+A+ K
Sbjct: 297 NGKKIKDRQVAVDWAIAKDK 316
Score = 198 (74.8 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 65/264 (24%), Positives = 116/264 (43%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+ I+NL + L FS FG +L KI G+ +GF FV F+ A A+ +N
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMN 297
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNL----DESTTDEDLKK-IFGEYGT 157
G I D+QV V + K + + N+ +N+ +E+ ++D KK +
Sbjct: 298 GKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKKSISKKSD 357
Query: 158 ITSAVVMRDGDGKSKCFGFVNFEN----ADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
+ D D S + EN +DD + + DD + +
Sbjct: 358 SSEDEDDDDDDDDSSGSEMDDAENESQQSDDEDDDDDDDDDDDDDDND---DDDDDDDDD 414
Query: 214 EQELKGQFEQAMKETV---DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+ + +G+ K D +G ++I+NL ++E L+E+ +FG ++ +V+ +P
Sbjct: 415 DDDSEGKTPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNP 474
Query: 271 -SGISKGSGFVAFSTPEEASRALA 293
+G+SKG F F + E A + +A
Sbjct: 475 DTGVSKGCAFAQFKSKEAAEKCIA 498
Score = 162 (62.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 43/136 (31%), Positives = 71/136 (52%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
IK K + + ++NL ++DLK+IF E+GT+ A + DGK + F FV F+ +A
Sbjct: 232 IKLK-SRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAG 290
Query: 187 KAVEALNGKKFDDRE----WYVGK-----AQKKSE----REQELKGQFEQAMKETVDKFQ 233
KA+ A+NGKK DR+ W + K Q S +E+ + G+ E+A + K +
Sbjct: 291 KALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKK 350
Query: 234 GLNLYIKNLGDSIDDE 249
++ + D DD+
Sbjct: 351 SISKKSDSSEDEDDDD 366
Score = 134 (52.2 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 28/85 (32%), Positives = 52/85 (61%)
Query: 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 294
+ L+++ L ++ +E L E+FSE G + +C V+ D +G G+V FS ++A RAL E
Sbjct: 4 VTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKE 63
Query: 295 MNGKMIVSKPLYVAVAQRKEERRAR 319
+ K+ + ++V VA++K + + R
Sbjct: 64 V--KLYDDQKIFVTVAKKKLDDKKR 86
Score = 133 (51.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 29/85 (34%), Positives = 53/85 (62%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+FV+ L E+ ++E L +IF E G + + V+ D + K + FG+V F DDA +A++ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 194 GKKFDDREWYVGKAQKKSEREQELK 218
K +DD++ +V A+KK + ++ K
Sbjct: 65 -KLYDDQKIFVTVAKKKLDDKKRKK 88
Score = 118 (46.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 32/98 (32%), Positives = 45/98 (45%)
Query: 17 TPLNNKSIRIMYSHRDPS-IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
T + KS + PS +K G + I+NL + L FS FG +L +I
Sbjct: 99 TEESQKSGETKNTEEIPSPTKKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLK 158
Query: 76 GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
G+ KGF FVQF+ A+ A +N I D+ V V
Sbjct: 159 PDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEV 196
Score = 110 (43.8 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 29/107 (27%), Positives = 56/107 (52%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F++ L ++ ++ L + FS G + +C + D + +GFG+V F ++ AQ A+ ++
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVK 65
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
L +D+++FV +K + + K K N N D T+E K
Sbjct: 66 --LYDDQKIFVTVAKKKLDDK----KRKKNAK--TNKDSGDTEESQK 104
Score = 85 (35.0 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEA- 191
+F++NL + +E L+++ ++G ++ VVM G SK F F++ + A K + A
Sbjct: 441 IFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIAAA 500
Query: 192 LNGKKF 197
L+ K+F
Sbjct: 501 LDEKEF 506
Score = 72 (30.4 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 34/107 (31%), Positives = 45/107 (42%)
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL-FSEFG----TITSC 264
K R +ELK + + V K + L + NL S+D KL L S G I C
Sbjct: 569 KRTRFEELKRARLKDINVYVSKTR---LCVHNLPKSVDKNKLFNLCVSAAGGKGVRIIEC 625
Query: 265 KVMRDPS-------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
++M D G S G GFV F E A +AL +N + P
Sbjct: 626 RIMYDKKPVKGQVMGQSLGYGFVEFQEHEHAIQALRHLNNNPDIFGP 672
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 229 (85.7 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 55/184 (29%), Positives = 99/184 (53%)
Query: 15 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
N T + +I S D + N+ + L +S+ + L F S G I SCK+
Sbjct: 41 NNTAHGSNAINNCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVR 100
Query: 75 DG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 133
D +GQS G+GFV + + + A+ AI+ LNG+ + K + V + + +I+ N
Sbjct: 101 DKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSY----ARPSSASIRDA--N 154
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 193 NGKK 196
NG+K
Sbjct: 215 NGQK 218
Score = 138 (53.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L S+ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 135 (52.6 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L +S T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 128 LNGLRLQTKTIKVSYARPSS 147
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 125 (49.1 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKG 213
Query: 295 MNGKM--IVSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 214 LNGQKPPAATEPITVKFANNPSQKTN--QAILSQL 246
Score = 122 (48.0 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 118 (46.6 bits), Expect = 0.00057, P = 0.00057
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 38 SGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
+GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 301 AGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 360
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQER 122
AI LNG + D+ + V K +
Sbjct: 361 MAIASLNGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 221 (82.9 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 154 (59.3 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 135 (52.6 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 131 (51.2 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 262 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 321
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 322 ASLNGYRLGDRVLQVSFKTNKTHK 345
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 39 GTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN 96
GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 260 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 319
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQER 122
AI LNG + D+ + V K +
Sbjct: 320 AIASLNGYRLGDRVLQVSFKTNKTHK 345
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 221 (82.9 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 154 (59.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 135 (52.6 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 131 (51.2 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 221 (82.9 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 154 (59.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 135 (52.6 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 131 (51.2 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 276 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 336 ASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 117 (46.2 bits), Expect = 0.00065, P = 0.00065
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 39 GTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN 96
GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 274 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 333
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQER 122
AI LNG + D+ + V K +
Sbjct: 334 AIASLNGYRLGDRVLQVSFKTNKTHK 359
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 206 (77.6 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 52/170 (30%), Positives = 87/170 (51%)
Query: 30 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQ 87
H D R G N+ + L +++ L FSS G + S K+ D +G S G+GFV
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 88 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 147
+ N + A+ AI+ LNG+ + K + V F R ET+ K N+++ L + T +D
Sbjct: 68 YLNAKDAERAINTLNGLRLQSKTIKVS-FARPSS-ETI----KDANLYISGLPRTMTQKD 121
Query: 148 LKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG K
Sbjct: 122 VEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
Score = 147 (56.8 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 30/98 (30%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ ++ PS N++I L +++ K + D F FG+
Sbjct: 74 AERAINTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGH 131
Query: 67 ILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D +G S+G F++F+ + A+ AI NG
Sbjct: 132 IINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 146 (56.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 51/189 (26%), Positives = 89/189 (47%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+ V L ++ T ++L+ +F G + SA ++RD G+ F N +A A A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYLNAKDAERAI 78
Query: 193 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
N G + Q K+ +K F + ET+ + NLYI L ++ + +
Sbjct: 79 NTLN--------GLRLQSKT-----IKVSFARPSSETI---KDANLYISGLPRTMTQKDV 122
Query: 252 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVA 308
+++F FG I + +V+ D + G+S+G F+ F EA A+A NG S+P+ V
Sbjct: 123 EDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVK 182
Query: 309 VAQRKEERR 317
A + +
Sbjct: 183 FAANPNQSK 191
Score = 135 (52.6 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKTLQVSFKTSKSHK 326
Score = 131 (51.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 127 (49.8 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 221 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278
+E M + D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV + ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE 101
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 36/108 (33%), Positives = 49/108 (45%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
F+P+ + + S S SG IFI NL + D L F FG + + K+ D
Sbjct: 220 FSPMGVDHMSSISSVNVASSASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRD 278
Query: 76 -GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ + KGFGFV N E A AI LNG + DK + V K +
Sbjct: 279 FNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 326
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 210 (79.0 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 47/157 (29%), Positives = 86/157 (54%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ L FSS G + S K+ D +G S G+GFV + N A+ AI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG+ + K + V + + +++ K N+++ L ++ T +D++++FG YG I +
Sbjct: 95 LNGLRLQSKTIKVSY--ARPSSDSI----KDANLYISGLPKTMTQKDVEEMFGRYGRIIN 148
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK 196
+ V+ D G S+ F+ F+ +A A++ LNG+K
Sbjct: 149 SRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQK 185
Score = 154 (59.3 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA+ LN L +K+I++ Y+ PS N++I L K++ K + + F +
Sbjct: 86 NDAERAISTLNGLRLQSKTIKVSYAR--PSSDSIKDANLYISGLPKTMTQKDVEEMFGRY 143
Query: 65 GNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ ++ D SG S+G F++F+ + A++AI LNG
Sbjct: 144 GRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 135 (52.6 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 216 ELKGQFEQAMK-ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGI 273
++ +E M E +D NL + L ++ ++L+ LFS G + S K++RD +G
Sbjct: 16 DMSNGYEDHMADELIDS--KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGH 73
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
S G GFV + P +A RA++ +NG + SK + V+ A+
Sbjct: 74 SLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYAR 111
Score = 131 (51.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 257 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAI 316
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 317 ASLNGYRLGDKILQVSFKTSKSHK 340
Score = 124 (48.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV + ++AA A+ +L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 122 (48.0 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ + ++L+ +F G + SA ++RD G S +GFVN+ N +DA +A+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ S+
Sbjct: 95 LNGLRLQSKTIKVSYARPSSD 115
Score = 118 (46.6 bits), Expect = 0.00045, P = 0.00045
Identities = 33/95 (34%), Positives = 45/95 (47%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
F+P++ + M P SG IFI NL + D L F FG + + K+ D
Sbjct: 234 FSPMSVDHMSGMSGVNVPGNSSSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRD 292
Query: 76 -GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 109
+ + KGFGFV + E A AI LNG + DK
Sbjct: 293 FNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDK 327
Score = 116 (45.9 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 288
D + NLYI L ++ + ++E+F +G I + +V+ D SG+S+G F+ F EA
Sbjct: 115 DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEA 174
Query: 289 SRALAEMNGK 298
A+ ++NG+
Sbjct: 175 EDAIKDLNGQ 184
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 215 (80.7 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 48/188 (25%), Positives = 94/188 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+ V L ++ T ++ K +FG G I S ++RD + G+ F N D A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI-TGQSLGY-GFVNYSDPNDADKAI 97
Query: 193 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
N G K Q K+ +K + + ++ + NLY+ L ++ +++
Sbjct: 98 NTLN--------GLKLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMSQKEM 141
Query: 252 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 308
++LFS++G I + +++ D + G+S+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 142 EQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVK 201
Query: 309 VAQRKEER 316
A ++
Sbjct: 202 FANNPSQK 209
Score = 156 (60.0 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +A++ LN L K+I++ Y+ PS N+++ L K++ K + FS +
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 65 GNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 129 (50.5 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 193 NGKKFDDREWYVG-KAQKK 210
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 215 (80.7 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 48/188 (25%), Positives = 94/188 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+ V L ++ T ++ K +FG G I S ++RD + G+ F N D A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI-TGQSLGY-GFVNYSDPNDADKAI 97
Query: 193 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
N G K Q K+ +K + + ++ + NLY+ L ++ +++
Sbjct: 98 NTLN--------GLKLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMSQKEM 141
Query: 252 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 308
++LFS++G I + +++ D + G+S+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 142 EQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVK 201
Query: 309 VAQRKEER 316
A ++
Sbjct: 202 FANNPSQK 209
Score = 156 (60.0 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +A++ LN L K+I++ Y+ PS N+++ L K++ K + FS +
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 65 GNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 129 (50.5 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 193 NGKKFDDREWYVG-KAQKK 210
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 221 (82.9 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 128 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 182 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 154 (59.3 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 178
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 179 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 135 (52.6 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 133 (51.9 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 131 (51.2 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 128 LNGLRLQTKTIKVSYARPSS 147
Score = 126 (49.4 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 213
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 214 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 246
Score = 122 (48.0 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 303 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 362
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 363 ASLNGYRLGDRVLQVSFKTNKTHK 386
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 274 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 331
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 332 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 386
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 221 (82.9 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 129 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 182
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 183 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Score = 154 (59.3 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 179
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 180 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 135 (52.6 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 133 (51.9 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 131 (51.2 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 126 (49.4 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 247
Score = 122 (48.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 275 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 332
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 333 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 387
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 216 (81.1 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 52/162 (32%), Positives = 89/162 (54%)
Query: 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKES 93
I +S T N+ I L + + + + F+S G I SCK+ D +GQS G+GFV + +E
Sbjct: 37 IGESKT-NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREED 95
Query: 94 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
A A+ NG+ + +K + V + + + + K +N++V + +S T +L+ IF
Sbjct: 96 ALRAVSSFNGLRLQNKTIKVSY--ARPSNDQI----KGSNLYVSGIPKSMTLHELESIFR 149
Query: 154 EYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNG 194
+G I ++ ++ D G SK GFV F+ D+A A++ LNG
Sbjct: 150 PFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 155 (59.6 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 36/100 (36%), Positives = 56/100 (56%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+ N L NK+I++ Y+ PS + N+++ + KS+ L F FG
Sbjct: 96 ALRAVSSFNGLRLQNKTIKVSYAR--PSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQ 153
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGML 105
I++ +I +D +G SKG GFV+F+ K+ A AI LNG +
Sbjct: 154 IITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 141 (54.7 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 44/168 (26%), Positives = 82/168 (48%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+ + L + T E+++ +F G I S ++RD + G+ F N A+ A+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRD-KVTGQSLGY-GFVNYVREEDALRAV 100
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ F+ + Q K+ +K + + D+ +G NLY+ + S+ +L+
Sbjct: 101 SS--FNGL-----RLQNKT-----IKVSYARPSN---DQIKGSNLYVSGIPKSMTLHELE 145
Query: 253 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM 299
+F FG I + +++ D +G+SKG GFV F +EA A+ +NG +
Sbjct: 146 SIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 132 (51.5 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G L++ NL DD L +LFS+FG I + K++RD + KG FV+ S EA A+
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 294 EMNGKMIVSKPLYV 307
+NG + K L V
Sbjct: 433 SLNGTNLAGKTLQV 446
Score = 129 (50.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL I L + E+++ LF+ G I SCK++RD +G S G GFV + E+A RA++
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 295 MNGKMIVSKPLYVAVAQRKEER 316
NG + +K + V+ A+ ++
Sbjct: 103 FNGLRLQNKTIKVSYARPSNDQ 124
Score = 99 (39.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+FV NL T D L ++F ++G I + ++RD + K + FV+ N +A A+ +LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 194 G 194
G
Sbjct: 436 G 436
Score = 38 (18.4 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 546 MEVLRSVAQQQANNPADQLASLSL 569
M + +V+Q A PAD L + +L
Sbjct: 267 MGAITAVSQPTATLPADYLTTSAL 290
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 219 (82.2 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 105 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 158
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 159 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 195
Score = 155 (59.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 98 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 155
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 156 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 132 (51.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
Score = 129 (50.5 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 131 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 190
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 191 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 223
Score = 128 (50.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 105 LNGLRLQTKTIKVSYAR 121
Score = 124 (48.7 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 105 LNGLRLQTKTIKVSYARPSS 124
Score = 119 (46.9 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 267 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 326
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 327 ASLNGYRLGDRVLQVSFKTNKAHK 350
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 244 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 301
Query: 75 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 302 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 350
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 219 (82.2 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 155 (59.6 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 157
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 132 (51.5 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 129 (50.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 253 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 310
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 311 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 119 (46.9 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 219 (82.2 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 155 (59.6 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 157
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 132 (51.5 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 129 (50.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 253 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 310
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 311 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 119 (46.9 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHK 365
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 219 (82.2 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 49/166 (29%), Positives = 93/166 (56%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + N+ + L +++ + L F S G I SCK+ D +GQS G+GFV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A+ AI+ LNG+ + K + V + + +I+ N++V L ++ T ++L+++
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQL 173
Query: 152 FGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
F ++G I TS +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 174 FSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQK 219
Score = 159 (61.0 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 34/98 (34%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS FG
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQFGR 179
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 180 IITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 136 (52.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 132 (51.5 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 131 (51.2 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 128 (50.1 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS+FG I + +++ D +G+S+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKG 214
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA S +
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKSS--QALLSHL 247
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 35/115 (30%), Positives = 52/115 (45%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P+ +GTG IF+ NL D L F FG +
Sbjct: 275 AYGVKRFSPMTIDGVTSLAGINLPA--HAGTGWCIFVYNLAPDADENVLWQMFGPFGAVT 332
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 333 NVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 121 (47.7 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAI 363
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 219 (82.2 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 49/158 (31%), Positives = 90/158 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG--SGQSKGFGFVQFENKESAQNAID 99
N+ + L +++ + L F S G I SCK+ D GQS G+GFV + + + A+ AI+
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI- 158
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I
Sbjct: 127 TLNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
TS +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 181 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 50/188 (26%), Positives = 95/188 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+ V L ++ T E+LK +FG G I S ++RD + + G+ F N D A +A+
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGY-GFVNYIDPKDAEKAI 125
Query: 193 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
N G + Q K+ +K + + ++ + NLY+ L ++ ++L
Sbjct: 126 NTLN--------GLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 169
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVA 308
++LFS++G I + +++ D +G+S+G GF+ F EA A+ +NG+ ++P+ V
Sbjct: 170 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 229
Query: 309 VAQRKEER 316
A ++
Sbjct: 230 FANNPSQK 237
Score = 155 (59.6 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 178
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 179 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 133 (51.9 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
Score = 121 (47.7 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 365 ASLNGYRLGDRVLQVSFKTSKTHK 388
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 38 SGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
+GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 302 AGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 361
Query: 96 NAIDKLNGMLINDK 109
AI LNG + D+
Sbjct: 362 MAIASLNGYRLGDR 375
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 220 (82.5 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
Identities = 60/204 (29%), Positives = 109/204 (53%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRD-PSIRKSGTG------NIFIKNLDKSIDH 54
FM+ S V N P +N S ++R+ PS ++G N+ + L +++
Sbjct: 18 FMIISTMEP-QVSN-GPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQ 75
Query: 55 KALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
+ F S G I SCK+ D +GQS G+GFV + + + A+ AI+ LNG+ + K + V
Sbjct: 76 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 135
Query: 114 GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSK 172
+ + +I+ N++V L ++ T ++L+++F +YG I TS +++ G S+
Sbjct: 136 SY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 189
Query: 173 CFGFVNFENADDAAKAVEALNGKK 196
GF+ F+ +A +A++ LNG+K
Sbjct: 190 GVGFIRFDKRIEAEEAIKGLNGQK 213
Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
Score = 129 (50.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 149 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 208
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 209 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 241
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 123 LNGLRLQTKTIKVSYAR 139
Score = 124 (48.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 123 LNGLRLQTKTIKVSYARPSS 142
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 269 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 326
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 327 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 381
Score = 119 (46.9 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 298 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 357
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 358 ASLNGYRLGDRVLQVSFKTNKAHK 381
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 211 (79.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 155 (59.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +A++ LN L K+I++ Y+ PS N+++ L K++ K + FS +
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 65 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 193 NGKKFDDREWYVG-KAQKK 210
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGK--MIVSKPLYVAVAQRKEER 316
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 117 (46.2 bits), Expect = 0.00067, P = 0.00067
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 35 IRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 92
+R G G IF+ NL D L F FG + + K+ D + + KGFGFV N +
Sbjct: 277 VRGCGGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 336
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
A AI LNG + ++ + V KQ +
Sbjct: 337 EAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 211 (79.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 155 (59.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +A++ LN L K+I++ Y+ PS N+++ L K++ K + FS +
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 65 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 193 NGKKFDDREWYVG-KAQKK 210
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGK--MIVSKPLYVAVAQRKEER 316
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 211 (79.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 155 (59.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +A++ LN L K+I++ Y+ PS N+++ L K++ K + FS +
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 65 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 193 NGKKFDDREWYVG-KAQKK 210
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGK--MIVSKPLYVAVAQRKEER 316
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 219 (82.2 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 155 (59.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 162
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 163 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 132 (51.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
Score = 129 (50.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKTS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 315
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 316 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 370
Score = 119 (46.9 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKTHK 370
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 219 (82.2 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 155 (59.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 162
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 163 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 132 (51.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
Score = 129 (50.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 315
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 316 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
Score = 119 (46.9 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKAHK 370
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 211 (79.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 155 (59.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +A++ LN L K+I++ Y+ PS N+++ L K++ K + FS +
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 65 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 193 NGKKFDDREWYVG-KAQKK 210
NG + +R V K K+
Sbjct: 347 NGYRLGERVLQVSFKTSKQ 365
Score = 128 (50.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 284 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 343
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K+ +
Sbjct: 344 ASLNGYRLGERVLQVSFKTSKQHK 367
Score = 126 (49.4 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 27/95 (28%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGK--MIVSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ + ++P+ V A ++ QA +Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQKTG--QALLTQL 218
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 219 (82.2 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 155 (59.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 132 (51.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 129 (50.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 218
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 119 (46.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 266 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 323
Query: 75 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 324 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 219 (82.2 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 155 (59.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 132 (51.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 129 (50.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 218
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 119 (46.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 266 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 323
Query: 75 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 324 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 221 (82.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 129 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 182
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 183 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Score = 154 (59.3 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 179
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 180 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 137 (53.3 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 193 NGKKFDDREWYVGKAQK 209
NG + DR V K K
Sbjct: 368 NGYRLGDRVLQVFKTNK 384
Score = 135 (52.6 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 131 (51.2 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 126 (49.4 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 247
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 31/78 (39%), Positives = 40/78 (51%)
Query: 39 GTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN 96
GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 303 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 362
Query: 97 AIDKLNGMLINDK--QVF 112
AI LNG + D+ QVF
Sbjct: 363 AIASLNGYRLGDRVLQVF 380
Score = 118 (46.6 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 293 AEMNGKMIVSKPLYV 307
A +NG + + L V
Sbjct: 365 ASLNGYRLGDRVLQV 379
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 215 (80.7 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 49/157 (31%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 154 (59.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 129 (50.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 126 (49.4 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 124 (48.7 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 215 (80.7 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 49/157 (31%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 154 (59.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 129 (50.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 126 (49.4 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 124 (48.7 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 210 (79.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 46/158 (29%), Positives = 89/158 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG+ + K + V + + +I+ N++V L ++ + +D++++F +YG I +
Sbjct: 99 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 161 AVVMRDG--DGKSKCFGFVNFENADDAAKAVEALNGKK 196
+ ++ D G S+ GF+ F+ ++A +A++ LNG+K
Sbjct: 153 SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQK 190
Score = 163 (62.4 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 55/202 (27%), Positives = 97/202 (48%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG K + V A+ S ++ + + +T+ + K++ E+L
Sbjct: 99 LNGLKLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMSQ--------KDM------EQL 143
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVAV 309
+ T + V + +GIS+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 144 FSQYGRIIT-SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 202
Query: 310 AQRKEERRARLQAQFSQMRPVA 331
A ++ QA +Q+ A
Sbjct: 203 ANNPSQKTG--QALLTQLYQTA 222
Score = 154 (59.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +A++ LN L K+I++ Y+ PS N+++ L K++ K + FS +
Sbjct: 90 NDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKDMEQLFSQY 147
Query: 65 GNILSCKIATDG--SGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 148 GRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 193 NGKKFDDREWYVG-KAQKK 210
NG + DR V K K+
Sbjct: 338 NGYRLGDRVLQVSFKTSKQ 356
Score = 128 (50.1 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 334
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K+ +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 38 SGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
+G G IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 272 TGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 331
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQER 122
AI LNG + D+ + V KQ +
Sbjct: 332 MAIASLNGYRLGDRVLQVSFKTSKQHK 358
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 219 (82.2 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 155 (59.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 157
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 132 (51.5 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 129 (50.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 119 (46.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 273 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 330
Query: 75 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 331 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 219 (82.2 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 155 (59.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 157
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 132 (51.5 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 129 (50.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 119 (46.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 273 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 330
Query: 75 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 331 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 219 (82.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 111 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 164
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 165 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 201
Score = 155 (59.6 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 104 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 161
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 162 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 132 (51.5 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
Score = 129 (50.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 137 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 196
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 197 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 229
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 111 LNGLRLQTKTIKVSYAR 127
Score = 124 (48.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 111 LNGLRLQTKTIKVSYARPSS 130
Score = 119 (46.9 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 300 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 359
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 360 ASLNGYRLGDRVLQVSFKTNKAHK 383
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00043
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 277 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 334
Query: 75 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 335 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 383
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 219 (82.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 155 (59.6 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 162
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 163 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 132 (51.5 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 129 (50.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 119 (46.9 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 278 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 335
Query: 75 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 336 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 219 (82.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 155 (59.6 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 162
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 163 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 132 (51.5 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 129 (50.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 119 (46.9 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 278 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 335
Query: 75 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 336 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 277 (102.6 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 81/267 (30%), Positives = 128/267 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G SCK+ T+ + + FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 103 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 214
A V++D GKSK +GFV+F N DA A+ + G+ R+ W K KS +E
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Query: 215 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
K +FE + ++ K +Y + + D+ +++ FS FG I +V +
Sbjct: 186 NNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---- 239
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMI 300
KG FV FST E A+ A+ +NG I
Sbjct: 240 -KGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 187 (70.9 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 119
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 120 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 179
Query: 120 ----QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
QE T ++ + N KN + TD+ +++ F +G I V +
Sbjct: 180 PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 239
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 240 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
Score = 167 (63.8 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G S ++ + + FV F DAA A+ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 313 K 313
K
Sbjct: 176 K 176
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 257 (95.5 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 62/149 (41%), Positives = 89/149 (59%)
Query: 23 SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG 82
SIR+ RD R+S G ++ N + D + DT + F I + D +G SKG
Sbjct: 34 SIRVC---RDMITRRS-LGYAYV-NFQQPADAERALDTMN-FDVIKGKPVVCDENG-SKG 86
Query: 83 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLD 140
+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE + + K F NV++KN
Sbjct: 87 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFG 146
Query: 141 ESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
E DE LK +FG++G S VM D G
Sbjct: 147 EDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 209 (78.6 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 49/118 (41%), Positives = 71/118 (60%)
Query: 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 214
+ I V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE
Sbjct: 69 FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 127
Query: 215 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D SG
Sbjct: 128 AELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 115 (45.5 bits), Expect = 0.00010, P = 0.00010
Identities = 31/93 (33%), Positives = 49/93 (52%)
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
Y+ N D E+ + + F I V+ D +G SKG GFV F T E A RA+ +MNG
Sbjct: 51 YV-NFQQPADAERALDTMN-FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 107
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
++ + ++V + ++ER A L A+ + V
Sbjct: 108 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 140
Score = 92 (37.4 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 101 LNGMLINDKQV 111
+N +I K V
Sbjct: 67 MNFDVIKGKPV 77
Score = 43 (20.2 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 5 SSAARALDVLNFTPLNNKSI 24
+ A RALD +NF + K +
Sbjct: 58 ADAERALDTMNFDVIKGKPV 77
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 219 (82.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 149 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 202
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 203 SRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQK 239
Score = 155 (59.6 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 142 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 199
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 200 IITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 132 (51.5 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
Score = 128 (50.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 149 LNGLRLQTKTIKVSYAR 165
Score = 127 (49.8 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 36/115 (31%), Positives = 52/115 (45%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 68
A V F+P+ S+ + P +GTG IF+ NL D L F FG +
Sbjct: 295 AYGVKRFSPITIDSMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 352
Query: 69 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 353 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 407
Score = 124 (48.7 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 149 LNGLRLQTKTIKVSYARPSS 168
Score = 122 (48.0 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +G S+G GF+ F EA A+
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 295 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 235 LNGQKPSGAAEPITVKFANNPSQKTS--QALLSQL 267
Score = 119 (46.9 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 324 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 383
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 384 ASLNGYRLGDRVLQVSFKTNKTHK 407
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 200 (75.5 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 49/170 (28%), Positives = 88/170 (51%)
Query: 30 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQ 87
H D R G N+ + L +++ L FSS G + S K+ D +G S G+GFV
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 88 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 147
+ N + A+ AI+ LNG+ + K + V + + E++ K N+++ L + T +D
Sbjct: 68 YLNAKDAERAINTLNGLRLQSKTIKVS--VARPSSESI----KDANLYISGLPRTMTQKD 121
Query: 148 LKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK 196
++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 122 VEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
Score = 143 (55.4 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ + PS N++I L +++ K + D F FG
Sbjct: 74 AERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGR 131
Query: 67 ILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D +G S+G F++F+ + A+ AI NG
Sbjct: 132 IINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 137 (53.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 49/189 (25%), Positives = 88/189 (46%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+ V L ++ T ++L+ +F G + SA ++RD G+ F N +A A A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYLNAKDAERAI 78
Query: 193 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
N G + Q K+ +K + E++ + NLYI L ++ + +
Sbjct: 79 NTLN--------GLRLQSKT-----IKVSVARPSSESI---KDANLYISGLPRTMTQKDV 122
Query: 252 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVA 308
+++F FG I + +V+ D + G+S+G F+ F EA A+A NG S+P+ V
Sbjct: 123 EDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVK 182
Query: 309 VAQRKEERR 317
A + +
Sbjct: 183 FAANPNQNK 191
Score = 132 (51.5 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V K +
Sbjct: 303 ASLNGYRLGDKTLQVFFKTSKSHK 326
Score = 128 (50.1 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 31/73 (42%), Positives = 38/73 (52%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 102 NGMLINDK--QVF 112
NG + DK QVF
Sbjct: 306 NGYRLGDKTLQVF 318
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 196 (74.1 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 46/160 (28%), Positives = 84/160 (52%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G N+ + L +++ + L FSS G I S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSPFGR 131
Query: 158 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 196
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 154 (59.3 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 31/98 (31%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ Y+ + K N++I L +++ K + D FS FG
Sbjct: 74 AERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSPFGR 131
Query: 67 ILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D + G S+G F++F+ + A+ AI NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 138 (53.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 221 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278
+E M E D NL + L ++ E+L+ LFS G I S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYG 64
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 137 (53.3 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEAS A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAI 302
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 131 (51.2 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+L+ +F G I SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 126 (49.4 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++A+ A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 111 (44.1 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 295 MNGKMIV--SKPLYVAVAQRKEERR 317
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 220 (82.5 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 51/160 (31%), Positives = 90/160 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F SFG + SCK+ D +GQS G+GFV + +E A+ AI+
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG+ + +K + V + + E++ K N++V L ++ T DL+ +F YG I +
Sbjct: 171 LNGLRLQNKTIKVS--IARPSSESI----KGANLYVSGLPKNMTQSDLESLFSPYGKIIT 224
Query: 161 AVVMRD---GD---GKSKCFGFVNFENADDAAKAVEALNG 194
+ ++ D G+ G SK GF+ F+ +A +A++ LNG
Sbjct: 225 SRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 164 (62.8 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 57/203 (28%), Positives = 97/203 (47%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ + ++++ +F +G + S ++RD G+S +GFVN+ +DA KA+ A
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG + ++ V A+ SE +KG GL KN+ S D E L
Sbjct: 171 LNGLRLQNKTIKVSIARPSSE---SIKGANLYV--------SGLP---KNMTQS-DLESL 215
Query: 252 KELFSEFGT--ITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVS--KPLY 306
+ + T I + + +G+SKG GF+ F EA RA+ E+NG + +P+
Sbjct: 216 FSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 275
Query: 307 VAVAQRKEERRARLQAQFSQMRP 329
V A + +Q + + P
Sbjct: 276 VKFANNPSSNKNSMQPLAAYIAP 298
Score = 141 (54.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 33/103 (32%), Positives = 55/103 (53%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L NK+I++ + PS N+++ L K++ L FS +G
Sbjct: 164 AEKAINALNGLRLQNKTIKVSIAR--PSSESIKGANLYVSGLPKNMTQSDLESLFSPYGK 221
Query: 67 ILSCKIATDG------SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G SKG GF++F+ + A AI +LNG
Sbjct: 222 IITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 121 (47.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL T + L ++FG +G + S V+RD K K FGFV N ++A A+++L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 193 NGKKFDDREWYVG-KAQKKSE 212
NG +R V K K +
Sbjct: 423 NGYTLGNRVLQVSFKTNKNKQ 443
Score = 118 (46.6 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL ++ L +LF FG + S KV+RD S KG GFV + EEA A+
Sbjct: 360 GWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAI 419
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
+NG + ++ L V+ K ++
Sbjct: 420 QSLNGYTLGNRVLQVSFKTNKNKQ 443
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 277 (102.6 bits), Expect = 5.8e-23, P = 5.8e-23
Identities = 81/267 (30%), Positives = 128/267 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G SCK+ T+ + + FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 103 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 214
A V++D GKSK +GFV+F N DA A+ + G+ R+ W K KS +E
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Query: 215 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
K +FE + ++ K +Y + + D+ +++ FS FG I +V +
Sbjct: 186 NNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---- 239
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMI 300
KG FV FST E A+ A+ +NG I
Sbjct: 240 -KGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 193 (73.0 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 119
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 120 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 179
Query: 120 ----QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
QE T ++ + N KN + TD+ +++ F +G I V +
Sbjct: 180 PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 239
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
K + FV F + AA A+ ++NG E +V K E K F+Q ++
Sbjct: 240 -----KGYSFVRFSTHESAAHAIVSVNGTTI---EGHVVKCYWGKESPDMTKN-FQQVIR 290
Query: 227 ETVDKFQ 233
VD Q
Sbjct: 291 FFVDYSQ 297
Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G S ++ + + FV F DAA A+ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 313 K 313
K
Sbjct: 176 K 176
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 195 (73.7 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G N+ + L +++ + L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 ISTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 158 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 196
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 153 (58.9 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+ LN L +K+I++ Y+ + K N++I L +++ K + D FS FG
Sbjct: 74 AERAISTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 67 ILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D + G S+G F++F+ + A+ AI NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 221 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278
+E M E D NL + L ++ E+L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV + T ++A RA++ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 134 (52.2 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 295 MNGKMIV--SKPLYVAVAQRKEERR 317
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 195 (73.7 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G N+ + L +++ + L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 ISTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 158 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 196
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 153 (58.9 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+ LN L +K+I++ Y+ + K N++I L +++ K + D FS FG
Sbjct: 74 AERAISTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 67 ILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D + G S+G F++F+ + A+ AI NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 221 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278
+E M E D NL + L ++ E+L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV + T ++A RA++ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 134 (52.2 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 295 MNGKMIV--SKPLYVAVAQRKEERR 317
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 194 (73.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 46/160 (28%), Positives = 82/160 (51%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I+ LNG+ + K + V + + E + K N+++ L S T +D++ +F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRSMTQKDVEDMFSRFGR 131
Query: 158 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 196
I ++ V+ D G S+ F+ F+ +A +A+ NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHK 171
Score = 157 (60.3 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ Y+ + K N++I L +S+ K + D FS FG
Sbjct: 74 AERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRSMTQKDVEDMFSRFGR 131
Query: 67 ILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D + G S+G F++F+ + A+ AI NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 134 (52.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 134 (52.2 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 221 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 115 (45.5 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
NLYI L S+ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITN 166
Query: 295 MNGKMIV--SKPLYVAVAQRKEERR 317
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 194 (73.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRNMTQKDVEDMFSRFGR 131
Query: 158 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 196
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 154 (59.3 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 31/98 (31%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ Y+ + K N++I L +++ K + D FS FG
Sbjct: 74 AERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRNMTQKDVEDMFSRFGR 131
Query: 67 ILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D + G S+G F++F+ + A+ AI NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 134 (52.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 134 (52.2 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 221 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 295 MNGKMIV--SKPLYVAVAQRKEERR 317
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 194 (73.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 158 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 196
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 154 (59.3 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 31/98 (31%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ Y+ + K N++I L +++ K + D FS FG
Sbjct: 74 AERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 67 ILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D + G S+G F++F+ + A+ AI NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 134 (52.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ ++L+ LFS G + S K++RD +G S G GFV + T ++A RA+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 295 MNGKMIVSKPLYVAVAQRKEE 315
+NG + SK + V+ A+ E
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 295 MNGKMIV--SKPLYVAVAQRKEERR 317
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 194 (73.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 86 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 139
Query: 158 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 196
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 140 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 179
Score = 154 (59.3 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 31/98 (31%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ Y+ + K N++I L +++ K + D FS FG
Sbjct: 82 AERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGR 139
Query: 67 ILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D + G S+G F++F+ + A+ AI NG
Sbjct: 140 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 134 (52.2 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 251 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 310
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 311 ASLNGYRLGDKILQVSFKTNKSHK 334
Score = 134 (52.2 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 221 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 13 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 72
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 73 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 109
Score = 129 (50.5 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 127 (49.8 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 88
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ SE
Sbjct: 89 LNGLRLQSKTIKVSYARPSSE 109
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG + DK + V K +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 112 (44.5 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 115 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 174
Query: 295 MNGKMIV--SKPLYVAVAQRKEERR 317
NG S+P+ V A + +
Sbjct: 175 FNGHKPPGSSEPITVKFAANPNQNK 199
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 194 (73.4 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 105 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 158
Query: 158 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 196
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 159 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 198
Score = 154 (59.3 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 31/98 (31%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ Y+ + K N++I L +++ K + D FS FG
Sbjct: 101 AERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGR 158
Query: 67 ILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D + G S+G F++F+ + A+ AI NG
Sbjct: 159 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 134 (52.2 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 270 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 329
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 330 ASLNGYRLGDKILQVSFKTNKSHK 353
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ ++L+ LFS G + S K++RD +G S G GFV + T ++A RA+
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 295 MNGKMIVSKPLYVAVAQRKEE 315
+NG + SK + V+ A+ E
Sbjct: 108 LNGLRLQSKTIKVSYARPSSE 128
Score = 129 (50.5 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 127 (49.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG + + V A+ SE
Sbjct: 108 LNGLRLQSKTIKVSYARPSSE 128
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG + DK + V K +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 112 (44.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 294
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 134 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 193
Query: 295 MNGKMIV--SKPLYVAVAQRKEERR 317
NG S+P+ V A + +
Sbjct: 194 FNGHKPPGSSEPITVKFAANPNQNK 218
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 279 (103.3 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 65/259 (25%), Positives = 136/259 (52%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NLD ++ + F+ G++ K+ DGS + FV+F + A A+ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
L+ D+++ V + ++++ T+ +VFV +L ++ L++ F +G ++ A
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 163 VMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V+RD + KSK +GFV++ ++A +A+E +NG+ R A +K +++
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 225
Query: 222 EQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E++ E ++ G N +Y+ N+ +DE +++ F+ FG IT ++ + +G F
Sbjct: 226 EKSYDEIYNQTSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIFK-----MQGYAF 279
Query: 280 VAFSTPEEASRALAEMNGK 298
V F + A++A+ +MN +
Sbjct: 280 VKFDNKDAAAKAIVQMNNQ 298
Score = 226 (84.6 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 53/181 (29%), Positives = 100/181 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NLD + T++ + +F + G++T V+ DG + FV F + A++A++ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
+ DRE V A + +++ ++ +T F ++++ +L +D++KL+E
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKI---------DTTRHF---HVFVGDLSSEVDNQKLRE 153
Query: 254 LFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F FG ++ KV+RD + SKG GFV++ EEA RA+ +MNG+ + + + A R
Sbjct: 154 AFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATR 213
Query: 313 K 313
K
Sbjct: 214 K 214
Score = 196 (74.1 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 53/208 (25%), Positives = 109/208 (52%)
Query: 7 AARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFS 62
A++AL +N L ++ +++ ++ + I + ++F+ +L +D++ L + F
Sbjct: 97 ASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQ 156
Query: 63 SFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-- 119
FG++ K+ D + +SKG+GFV + +E A+ AI+++NG + + + RK
Sbjct: 157 PFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 216
Query: 120 -QER---------ETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
QE+ + + +T +N V+V N+ S T++++++ F +G IT +
Sbjct: 217 DQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIF--- 272
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGK 195
K + + FV F+N D AAKA+ +N +
Sbjct: 273 --KMQGYAFVKFDNKDAAAKAIVQMNNQ 298
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 181 (68.8 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 50/194 (25%), Positives = 98/194 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCK-IATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + KS + + + + F++ NI S I + + +G FV ++E A AI++L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKF-NNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ N K+ F G Q + + + K + +FV L S +E ++++F +G +
Sbjct: 65 H----NSKK-FQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVED 119
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD--REWYVG-----KAQKKSER 213
++R + +SK GF+ F+N + A A+ LNG K D V K +KK ++
Sbjct: 120 ICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKKKKQK 179
Query: 214 EQELKGQFEQAMKE 227
+Q+++ Q +Q ++
Sbjct: 180 QQQIQIQMQQRQQQ 193
Score = 160 (61.4 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 54/202 (26%), Positives = 102/202 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 192
+FV + +S +E++K +F I S ++++ + + FV+ + ++A +A+E L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 193 NGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+ K + + Q K ++ EQE + A K L++ L S ++E++
Sbjct: 65 HNSK--KFQGVLNNLQVKYADSEQE-----KLASK----------LFVGMLPRSYEEEQI 107
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVS-KPLYVAV 309
+ELF G + ++R P+ SKG GF+ F E A A+A +NG K+ S PL V
Sbjct: 108 RELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKF 167
Query: 310 A-----QRKEERRARLQAQFSQ 326
A ++K++++ ++Q Q Q
Sbjct: 168 ADTEKDKKKKQKQQQIQIQMQQ 189
Score = 152 (58.6 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRA 291
QG NL++ N+ + D L LF ++G + S KV D + G+SKG GFV++ P A+ A
Sbjct: 401 QGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLA 460
Query: 292 LAEMNGKMIVSKPLYVAVAQ 311
++ ++G+M+ K L V++ Q
Sbjct: 461 ISNLHGQMMAGKKLKVSLKQ 480
Score = 128 (50.1 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGF 85
M + ++ S+ G+ N+F+ N+ L F +G ++S K+ D +G SKGFGF
Sbjct: 390 MGNKKNQSVGPQGS-NLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGF 448
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFV 113
V ++N SA AI L+G ++ K++ V
Sbjct: 449 VSYDNPASANLAISNLHGQMMAGKKLKV 476
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 190
+N+FV N+ +D DL +F +YG + SA V D + G SK FGFV+++N A A+
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQ 215
L+G+ ++ V Q + Q
Sbjct: 463 NLHGQMMAGKKLKVSLKQTSGQGSQ 487
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 274 (101.5 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 82/286 (28%), Positives = 144/286 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGN--ILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
I++ +L +D L+ F+S I+S K+ + +G S+G+GFV+FE+ + A +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 100 KLNGM-LINDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNLDESTTDEDLKKIFGE-YG 156
+ NG + N Q F ++ E + ++FV +L +D L + F E Y
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 157 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
++ +A V+ D + G+SK +GFV F + ++ KA+ +NG K R +G A +
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGY 284
Query: 216 ELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
+ +G + + T + +N +++ L S+ DE LK+ FSEFG I S K+ P G
Sbjct: 285 QQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVG- 340
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
KG GFV F A AL ++NG +I + + ++ + ++ R
Sbjct: 341 -KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 385
Score = 200 (75.5 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 65/210 (30%), Positives = 106/210 (50%)
Query: 7 AARALDVLNFTPLNN--KSIRI---MYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDT 60
A + L N P+ N + R+ +S + + +G +IF+ +L + LH+T
Sbjct: 159 ADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHET 218
Query: 61 FSS-FGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL- 117
FS + ++ + K+ D + G+SKG+GFV+F ++ A+ ++NG+ + + + +G
Sbjct: 219 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 278
Query: 118 RK----QERETVAIKTKFNN---------VFVKNLDESTTDEDLKKIFGEYGTITSAVVM 164
RK Q++ F +FV LD S TDEDLK+ F E+G I S V +
Sbjct: 279 RKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVS-VKI 337
Query: 165 RDGDGKSKCFGFVNFENADDAAKAVEALNG 194
G G C GFV F N +A +A+E LNG
Sbjct: 338 PVGKG---C-GFVQFVNRPNAEEALEKLNG 363
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 255 (94.8 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 48/67 (71%), Positives = 57/67 (85%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCK 71
GNILSCK
Sbjct: 123 GNILSCK 129
Score = 145 (56.1 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITS 160
F +G I S
Sbjct: 118 TFSAFGNILS 127
Score = 122 (48.0 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 45/136 (33%), Positives = 69/136 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNK 113
Query: 250 KLKELFSEFGTITSCK 265
L + FS FG I SCK
Sbjct: 114 ALYDTFSAFGNILSCK 129
Score = 113 (44.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 255 (94.8 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 48/67 (71%), Positives = 57/67 (85%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCK 71
GNILSCK
Sbjct: 123 GNILSCK 129
Score = 141 (54.7 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 33/120 (27%), Positives = 63/120 (52%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 44/136 (32%), Positives = 69/136 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 113
Query: 250 KLKELFSEFGTITSCK 265
L + FS FG I SCK
Sbjct: 114 ALYDTFSAFGNILSCK 129
Score = 114 (45.2 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 182 (69.1 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 47/164 (28%), Positives = 86/164 (52%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 189
+F+KNL+ STT+E LK +F + G + S + + G+ S FGFV + + A KA+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ L G D + V +++ ++ + + K+T K + ++N+ D
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSK-----ILVRNIPFQADKR 846
Query: 250 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 291
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 847 EIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 178 (67.7 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 61/240 (25%), Positives = 113/240 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIAT--DGSGQ--SKGFGFVQFENKESAQNAI 98
+FIKNL+ S + L FS G + SC I+ + +G+ S GFGFV++ E AQ A+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 99 DKLNGMLINDKQVFVG-------HFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+L G +++ ++ V L ++ V K + + V+N+ +++++
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQEL 851
Query: 152 FGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEAL--NGKKFDDR---EWYV 204
F +G + + + + G G + FGFV+F DA +A +AL + + R EW
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLVLEWAD 911
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
+ ++ R + + F + K+ + L+ ++ L DS D + + L GT C
Sbjct: 912 SEVSLQALRRKTAE-HFHEPPKKK--RSVVLDEILEQLEDSESDSEEQTLQLRAGTERGC 968
Score = 150 (57.9 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSG--ISKGS 277
E+ +E + G L+IKNL S +E LK +FS+ G + SC + + + +G +S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGF 776
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
GFV + PE+A +AL ++ G ++ S L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISER 811
Score = 128 (50.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 45/174 (25%), Positives = 82/174 (47%)
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAV----EALNGKK---FDDREWYVGKAQKKSEREQ 215
++R+ G + FV+F + ++ +A+ E + G+ F ++ K K+ +
Sbjct: 327 IVRNAHGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKP 386
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 274
+G+ +E D L+I+NL + +E L+ LFS+FG ++ D +
Sbjct: 387 -WQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKP 445
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
KG FV F PE A RA AE++G++ + L+V + K+E Q S +
Sbjct: 446 KGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYK 499
Score = 125 (49.1 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 35/132 (26%), Positives = 66/132 (50%)
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
G L N + + G L + E E + +F++NL ++T+EDL+++F ++G ++
Sbjct: 378 GPLKNSAKPWQGRTLGENEEEEDLADS--GRLFIRNLPYTSTEEDLQRLFSKFGPLSELH 435
Query: 163 VMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKKSEREQELKG 219
D K K F FV F + A +A ++G+ F R +V +K++ + + +G
Sbjct: 436 YPIDSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQG 495
Query: 220 QFEQAMKETVDK 231
+ KE+ DK
Sbjct: 496 SSYKKKKESKDK 507
Score = 105 (42.0 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+ +KNL + F+SFG + C + G+ + FGF+ F+++E A +A++ N
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFN 63
Query: 103 GMLINDKQVFV 113
I+ ++ V
Sbjct: 64 RSFIDTSRITV 74
Score = 104 (41.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ + VKNL ++ +++F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNH 61
Query: 192 LNGKKFDD 199
N + F D
Sbjct: 62 FN-RSFID 68
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 189 (71.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 48/164 (29%), Positives = 87/164 (53%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 189
+F+KNL+ STT+E LK +F + G + S + + G S FGFV ++ + A KA+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ L G D + V +++ ++ + + A K+T K + ++N+ D
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSK-----ILVRNIPFQADSR 851
Query: 250 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 291
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 852 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRA 895
Score = 176 (67.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 47/163 (28%), Positives = 82/163 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAI 98
+FIKNL+ S + L FS G + SC I+ G+ S GFGFV+++ E AQ A+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 99 DKLNGMLINDK--QVFVGHFLRKQ-----ERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+L G +++ +V + K ++ VA K + + V+N+ +++++
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIREL 856
Query: 152 FGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEAL 192
F +G + + + + G G + FGFV+F DA +A AL
Sbjct: 857 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Score = 149 (57.5 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSG--ISKGS 277
E+ +E + G L+IKNL S +E LK +FS+ G + SC + + + +G +S G
Sbjct: 722 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGF 781
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
GFV + PE+A +AL ++ G ++ L V +++R
Sbjct: 782 GFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISER 816
Score = 136 (52.9 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 42/161 (26%), Positives = 81/161 (50%)
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAV----EALNGKK---FDDREWYVGKAQKKSEREQ 215
++R+ G + FV+F + ++ KA+ E + G+ F ++ KA K+ +
Sbjct: 325 IVRNAHGNKTGYVFVDFSSEEEVKKALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTKA 384
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 274
+G+ +E D L+++NL + +E L++LFS++G ++ D +
Sbjct: 385 -WQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKP 443
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
KG FV F PE A +A AE++G++ + L+V + K+E
Sbjct: 444 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 484
Score = 121 (47.7 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 36/129 (27%), Positives = 63/129 (48%)
Query: 107 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
N + + G L + E E + +FV+NL ++++EDL+K+F +YG ++ D
Sbjct: 380 NSTKAWQGRTLGEHEEEEDLADS--GRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPID 437
Query: 167 G-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKKSEREQELKGQFE- 222
K K F FV F + A KA ++G+ F R +V +K++ + + G
Sbjct: 438 SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTPGSSSY 497
Query: 223 QAMKETVDK 231
+ KE+ DK
Sbjct: 498 KKKKESKDK 506
Score = 110 (43.8 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+ +KNL + + F++FG + C + G+ + FGF+ F+++E AQ A++ N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 103 GMLINDKQVFV 113
I+ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 106 (42.4 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ + VKNL +E +++F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 192 LNGKKFDD 199
N K F D
Sbjct: 62 FN-KSFID 68
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 187 (70.9 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 50/175 (28%), Positives = 90/175 (51%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD---GS------GQSKG 82
+PS K+ N+ I L +++ + L FSS G + S K+ D G G S G
Sbjct: 50 EPSDAKT---NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLG 106
Query: 83 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES 142
+GFV + N A+ AI+ LNG+ + K + V + + IK N+++ L ++
Sbjct: 107 YGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSD----GIKDA--NLYISGLPKT 160
Query: 143 TTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK 196
T ++++ +F +YG I ++ ++ D G S+ F+ F+ +A +A++ LNG K
Sbjct: 161 MTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSK 215
Score = 163 (62.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 35/100 (35%), Positives = 58/100 (58%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S A RA++ LN L +K+I++ Y+ PS N++I L K++ K + D F+ +
Sbjct: 116 SDAERAINTLNGLRLQSKTIKVSYAR--PSSDGIKDANLYISGLPKTMTQKNVEDMFTQY 173
Query: 65 GNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 103
G I++ +I D SG S+G F++F+ + A+ AI LNG
Sbjct: 174 GRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNG 213
Score = 143 (55.4 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 43/195 (22%), Positives = 94/195 (48%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+ + L ++ + E+L+ +F G + SA ++RD K G ++ + + +
Sbjct: 57 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRD-----KMAG-MSAHHTLGHSLGYGFV 110
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N D E + + + +K + + + D + NLYI L ++ + ++
Sbjct: 111 NYVNPSDAERAINTLNGLRLQSKTIKVSYA---RPSSDGIKDANLYISGLPKTMTQKNVE 167
Query: 253 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAV 309
++F+++G I + +++ D SG+S+G F+ F EA A+ ++NG S+P+ V
Sbjct: 168 DMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKF 227
Query: 310 AQR-KEERRARLQAQ 323
A + + ++L +Q
Sbjct: 228 AANPNQSKNSQLLSQ 242
Score = 133 (51.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 131 (51.2 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 285 GWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAI 344
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
+ +NG + K L V+ K +
Sbjct: 345 SSLNGYRLGDKVLQVSFKSSKSHK 368
Score = 126 (49.4 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 37/123 (30%), Positives = 61/123 (49%)
Query: 198 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
+DR+ + G + K E ++ +E M + + NL I L ++ E+L+ LFS
Sbjct: 21 NDRDSHKGASSIKQE-VYDMPNGYEDPMGDEPSDAK-TNLIINYLPQNMSQEELRSLFSS 78
Query: 258 FGTITSCKVMRDPS---------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
G + S K++RD G S G GFV + P +A RA+ +NG + SK + V+
Sbjct: 79 IGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVS 138
Query: 309 VAQ 311
A+
Sbjct: 139 YAR 141
Score = 120 (47.3 bits), Expect = 0.00031, P = 0.00031
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
IF+ NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 102 NGMLINDK 109
NG + DK
Sbjct: 348 NGYRLGDK 355
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 181 (68.8 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 51/181 (28%), Positives = 86/181 (47%)
Query: 30 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------------G 76
H D R G N+ + L +++ L FSS G + S K+ D
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLS 67
Query: 77 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFV 136
G S G+GFV + N + A+ AI+ LNG+ + K + V F R E++ K N+++
Sbjct: 68 KGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS-FARPSS-ESI----KDANLYI 121
Query: 137 KNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG
Sbjct: 122 SGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGH 181
Query: 196 K 196
K
Sbjct: 182 K 182
Score = 148 (57.2 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 30/98 (30%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN L +K+I++ ++ PS N++I L +++ K + D F FG+
Sbjct: 85 AERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGH 142
Query: 67 ILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ ++ D +G S+G F++F+ + A+ AI NG
Sbjct: 143 IINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 146 (56.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 49/193 (25%), Positives = 89/193 (46%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA---- 188
N+ V L ++ T ++L+ +F G + SA ++RD K GF ++ +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD-----KVAGFEMRSSSLSKGHSLGYG 75
Query: 189 -VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
V LN K D E + + + +K F + E++ + NLYI L ++
Sbjct: 76 FVNYLNAK---DAERAINTLNGLRLQSKTIKVSFARPSSESI---KDANLYISGLPRTMT 129
Query: 248 DEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIV--SKP 304
+ ++++F FG I + +V+ D + G+S+G F+ F EA A+A NG S+P
Sbjct: 130 QKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEP 189
Query: 305 LYVAVAQRKEERR 317
+ V A + +
Sbjct: 190 ITVKFAANPNQNK 202
Score = 134 (52.2 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 254 GWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 313
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + K L V+ K +
Sbjct: 314 ASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 132 (51.5 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + D+ V KS +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 35/110 (31%), Positives = 50/110 (45%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTGN--IFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
F+P+ + M S ++ S T IF+ NL + D L F FG + + K+
Sbjct: 231 FSPMG---VDHMSSISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVI 287
Query: 74 TD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D + + KGFGFV N E A AI LNG + DK + V K +
Sbjct: 288 RDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 253 (94.1 bits), Expect = 6.2e-21, P = 6.2e-21
Identities = 75/267 (28%), Positives = 133/267 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF-ENKESAQNAIDKL 101
+++ NL + + + FS G SCK+ D +G + FV+F EN+ +A A+ +
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAA-ALAAM 68
Query: 102 NGMLI--NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
NG I D +V Q+++T F+ VFV +L + +D++ F +G I+
Sbjct: 69 NGRKILGKDMKVNWASTPSSQKKDT---SNHFH-VFVGDLSPEISTDDVRAAFAPFGKIS 124
Query: 160 SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK-SEREQEL 217
A V++D GKSK +GF++F N DA A++ +NG+ R+ A +K S +
Sbjct: 125 DARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNN 184
Query: 218 KGQFEQAM--KETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
+G + + +E +++ N +Y + + D+ +++ FS FG I +V +
Sbjct: 185 EGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE---- 240
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMI 300
KG FV F + E A+ A+ +NG I
Sbjct: 241 -KGYSFVRFDSHEGAAHAIVSVNGTCI 266
Score = 169 (64.5 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G S ++ D G + FV F AA A+ A+N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K ++ V A S ++ K+T + F ++++ +L I + ++
Sbjct: 70 GRKILGKDMKVNWASTPSSQK-----------KDTSNHF---HVFVGDLSPEISTDDVRA 115
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GF++F +A A+ +MNG+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATR 175
Query: 313 K 313
K
Sbjct: 176 K 176
Score = 160 (61.4 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 63/238 (26%), Positives = 109/238 (45%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + F+
Sbjct: 61 AAAALAAMNGRKILGKDMKVNWAST-PSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAP 119
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
FG I ++ D +G+SKG+GF+ F NK A++AI ++NG + +Q+ RK
Sbjct: 120 FGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPS- 178
Query: 123 ETVAIKTKFNNVFVKNLD-ESTTDEDLKKIFGEY-GTITSAV---VMRDGD---GK---- 170
A K+ K+L E ++ Y G I S + +MR G+
Sbjct: 179 ---APKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEI 235
Query: 171 ----SKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK--AQKKSEREQELKGQ 220
K + FV F++ + AA A+ ++NG + + Y GK A +S ++ + Q
Sbjct: 236 RVFPEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQ 293
Score = 115 (45.5 bits), Expect = 0.00098, P = 0.00098
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 288
+D+ Q LY+ NL + + + ++FS+ G SCK++ D +G + FV F A
Sbjct: 3 MDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTG-NDPYCFVEFYENRHA 61
Query: 289 SRALAEMNGKMIVSKPLYV 307
+ ALA MNG+ I+ K + V
Sbjct: 62 AAALAAMNGRKILGKDMKV 80
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 269 (99.8 bits), Expect = 7.3e-21, P = 7.3e-21
Identities = 81/286 (28%), Positives = 142/286 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGN--ILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
I++ +L +D L+ +F+S I+S K+ + +G S+G+GFV+FE+ + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 100 KLNGMLI-NDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNLDESTTDEDLKKIFGE-YG 156
+ NG + N Q F ++ E + ++FV +L +D L + F E Y
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 157 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ-KKSERE 214
++ +A V+ D + G+SK +GFV F + ++ KA+ +NG K R +G A +K+
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGY 282
Query: 215 QELKGQFEQA-MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
Q+ G + +++ L S+ DE LK+ F+EFG I S K+ P G
Sbjct: 283 QQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVG- 338
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
KG GFV F A AL ++NG +I + + ++ + ++ R
Sbjct: 339 -KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
Score = 196 (74.1 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 60/184 (32%), Positives = 98/184 (53%)
Query: 28 YSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGS-GQSKGFG 84
+S + + +G +IF+ +L + LH+TFS + ++ + K+ D + G+SKG+G
Sbjct: 183 FSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYG 242
Query: 85 FVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-RK----QERETV---AIKTK-----F 131
FV+F ++ A+ ++NG+ + + + +G RK Q++ T+
Sbjct: 243 FVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIM 302
Query: 132 NN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
N +FV LD S TDEDLK+ F E+G I S V + G G C GFV F N +A +A+E
Sbjct: 303 NTTIFVGGLDSSVTDEDLKQPFNEFGEIVS-VKIPVGKG---C-GFVQFVNRPNAEEALE 357
Query: 191 ALNG 194
LNG
Sbjct: 358 KLNG 361
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 268 (99.4 bits), Expect = 9.0e-21, P = 9.0e-21
Identities = 85/285 (29%), Positives = 140/285 (49%)
Query: 35 IRKSGTGN--IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
I+ S N I+I +L + +D LH FS G ++S KI + +GQS+ +GFV+F
Sbjct: 76 IQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTH 135
Query: 92 ESAQNAIDKLNG-MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+A+ + NG M+ N +Q F ++ E A ++FV +L TD L+
Sbjct: 136 AAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRD 195
Query: 151 IFGE-YGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA- 207
F Y ++ A V+ D + G SK +GFV F + + ++A+ +NG R +G A
Sbjct: 196 TFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVAT 255
Query: 208 -QKKSEREQE------LKGQFEQAMKETV-DKFQG----LNLYIKNLGDSIDDEKLKELF 255
+K S EQ L G + T + G +++ L + DE+L++ F
Sbjct: 256 PKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSF 315
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
++FG + S K+ P+G KG GFV FS A A+ +++G +I
Sbjct: 316 NQFGEVVSVKI---PAG--KGCGFVQFSDRSSAQEAIQKLSGAII 355
Score = 158 (60.7 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 49/184 (26%), Positives = 87/184 (47%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 192
+++ +L + + L F + G + S ++R+ G+S+ +GFV F A K +++
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
NG + E + R + ET F ++++ +L + D L+
Sbjct: 146 NGTMMPNTE--------QPFRLNWAGFSTGEKRAETGSDF---SIFVGDLASDVTDTMLR 194
Query: 253 ELF-SEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ F S + ++ KV+ D + G SKG GFV F E SRA+ EMNG S+ + + VA
Sbjct: 195 DTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVA 254
Query: 311 QRKE 314
K+
Sbjct: 255 TPKK 258
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 29 SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 88
+H S S IF+ LD + + L +F+ FG ++S KI KG GFVQF
Sbjct: 283 THGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPA-----GKGCGFVQF 337
Query: 89 ENKESAQNAIDKLNGMLINDKQV 111
++ SAQ AI KL+G +I + V
Sbjct: 338 SDRSSAQEAIQKLSGAIIGKQAV 360
Score = 121 (47.7 bits), Expect = 0.00031, P = 0.00031
Identities = 30/117 (25%), Positives = 63/117 (53%)
Query: 5 SSAARALDVLNFTPLNN--KSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHD 59
++A + L N T + N + R+ ++ +++ TG+ IF+ +L + L D
Sbjct: 136 AAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRD 195
Query: 60 TFSS-FGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114
TF+S + ++ K+ D + G SKG+GFV+F ++ A+ ++NG+ + + + +G
Sbjct: 196 TFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIG 252
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 191 (72.3 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
G +F+ ++ S++ + + F+ FGNIL I D + SKG F+ F KE A NA
Sbjct: 16 GGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNA 75
Query: 98 IDKLN--GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED-LKKIFGE 154
++ N G + + + ++ + E ++ K +F+ L T+DED ++ +FG
Sbjct: 76 LNTTNESGTFLENMNKPLQ--VKYSDNEIEKMERK---LFIGML--GTSDEDQIRILFGN 128
Query: 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
YG I ++R+ DGK K +GF+ + D++ A+ ++GK
Sbjct: 129 YGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGK 169
Score = 173 (66.0 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 49/191 (25%), Positives = 94/191 (49%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
VFV ++ S +E + +IF ++G I +++D SK F+ F ++A A+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N G + + ++K + ++K + L+I LG S D+++++
Sbjct: 80 NES---------GTFLENMNKPLQVKYSDNE-----IEKMER-KLFIGMLGTS-DEDQIR 123
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
LF +G I ++R+ G KG GF+ +ST +E+ AL E++GK + + P+ V
Sbjct: 124 ILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKF 183
Query: 310 AQRKEERRARL 320
A + ++R +L
Sbjct: 184 ADTERQKRKKL 194
Score = 144 (55.7 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 33/109 (30%), Positives = 63/109 (57%)
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GM+ Q F + ++Q+++ + N++F+ L + DE+LK++F YG + S+
Sbjct: 260 GMM-QGNQAF-DYNQQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSK 317
Query: 163 VMRDGDGK-SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
V D + + SKCFGFV+++N A A++ LNG+ + ++ V ++K
Sbjct: 318 VFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREK 366
Score = 136 (52.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/103 (28%), Positives = 59/103 (57%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFV 280
+Q ++ ++ G +++ ++ S+++E + ++F++FG I +++D + +SKG F+
Sbjct: 5 QQQQQQQFNQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFI 64
Query: 281 AFSTPEEASRALAEMN--GKMI--VSKPLYVAVAQRKEERRAR 319
FST EEA AL N G + ++KPL V + + E+ R
Sbjct: 65 TFSTKEEADNALNTTNESGTFLENMNKPLQVKYSDNEIEKMER 107
Score = 127 (49.8 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
+ ++FI L + + L F+ +GN++S K+ D + QSK FGFV ++N +SA AI
Sbjct: 286 SNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAI 345
Query: 99 DKLNGMLINDKQVFVGHFLRKQE 121
+LNG I K++ V +F R+++
Sbjct: 346 QELNGRAIEGKKLKV-NFKREKQ 367
Score = 121 (47.7 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSG 278
Q +Q ++ + +L+I L + DE+LK+LF+ +G + S KV D + SK G
Sbjct: 272 QQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFG 331
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314
FV++ + A A+ E+NG+ I K L V + K+
Sbjct: 332 FVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREKQ 367
Score = 104 (41.7 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 21 NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS 80
NK +++ YS D I K +FI L S D + F ++G I I + G+
Sbjct: 90 NKPLQVKYS--DNEIEKMER-KLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKP 145
Query: 81 KGFGFVQFENKESAQNAIDKLNG 103
KG+GF+++ ++ ++NA+ +++G
Sbjct: 146 KGYGFIKYSTRDESENALREIDG 168
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 261 (96.9 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 76/267 (28%), Positives = 127/267 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 103 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 214
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K KS E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 215 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
K +++ + ++ +Y + + ++ +++ FS FG I +V D
Sbjct: 184 SNTKQLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD---- 237
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMI 300
KG F+ FS+ E A+ A+ +NG I
Sbjct: 238 -KGYSFIRFSSHESAAHAIVSVNGTTI 263
Score = 184 (69.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 58/222 (26%), Positives = 103/222 (46%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAP 117
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE- 121
FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 177
Query: 122 -RETVAIKTK---FNNV-----------FVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
+ T TK ++ V + + T++ +++ F +G I V D
Sbjct: 178 PKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + F+ F + + AA A+ ++NG + + Y GK
Sbjct: 238 -----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 170 (64.9 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 313 K 313
K
Sbjct: 174 K 174
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 260 (96.6 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 76/267 (28%), Positives = 127/267 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 103 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 214
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K KS E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 215 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
K ++ + ++ +Y + + ++ +++ FS FG I +V D
Sbjct: 184 SNTKQLSYDDVVNQSSPS--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD---- 237
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMI 300
KG FV F++ E A+ A+ +NG I
Sbjct: 238 -KGYSFVRFNSHESAAHAIVSVNGTTI 263
Score = 186 (70.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 59/222 (26%), Positives = 104/222 (46%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 59 AASALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAP 117
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE- 121
FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 177
Query: 122 -RETVAIKTK---FNNV-----------FVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
+ T TK +++V + + T++ +++ F +G I V D
Sbjct: 178 PKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 238 -----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 169 (64.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 313 K 313
K
Sbjct: 174 K 174
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 172 (65.6 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 40/131 (30%), Positives = 76/131 (58%)
Query: 68 LSCKIATDGSG-QSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
L ++ G G QS G+GFV + + + A+ AI+ LNG+ + K + V + + +
Sbjct: 106 LDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY----ARPSSAS 161
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDA 185
I+ N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A
Sbjct: 162 IRDA--NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 219
Query: 186 AKAVEALNGKK 196
+A++ LNG+K
Sbjct: 220 EEAIKGLNGQK 230
Score = 154 (59.3 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 133 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 190
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 191 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Score = 150 (57.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 58/212 (27%), Positives = 98/212 (46%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD---GDGKSKCFGFVN-FENADDAAKA 188
N+ V L ++ T E+LK +FG G I S ++RD G+ + F + FE
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLFEKWRPLDSE 109
Query: 189 VEALNGKKFDDREW-YVGKAQKKSERE--QELKGQFEQAMKETVD-------KFQGLNLY 238
V L GK + + +V K + L G Q V + NLY
Sbjct: 110 VIVL-GKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 168
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNG 297
+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+ +NG
Sbjct: 169 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Query: 298 KMI--VSKPLYVAVAQRKEERRARLQAQFSQM 327
+ ++P+ V A ++ QA SQ+
Sbjct: 229 QKPPGATEPITVKFANNPSQKTN--QAILSQL 258
Score = 133 (51.9 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 193 NGKKFDDREWYVGKAQKKSER 213
NG + DR V K+ +
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 122 (48.0 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 316 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 375
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
A +NG + + L V+ K +
Sbjct: 376 ASLNGYRLGDRVLQVSFKTNKTHK 399
Score = 117 (46.2 bits), Expect = 0.00078, P = 0.00078
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 39 GTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN 96
GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 314 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 373
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQER 122
AI LNG + D+ + V K +
Sbjct: 374 AIASLNGYRLGDRVLQVSFKTNKTHK 399
Score = 58 (25.5 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
N+ + L +++ + L F S G I SCK+ D
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 83
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 260 (96.6 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 77/274 (28%), Positives = 130/274 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 103 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 153
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 154 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 208
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 209 K-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
KS E K +++ + ++ +Y + + ++ +++ FS FG I +V
Sbjct: 188 APKSTYESNTKQLSYDEVVSQSSPN--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
D KG FV FS+ E A+ A+ +NG I
Sbjct: 246 FPD-----KGYSFVRFSSHESAAHAIVSVNGTTI 274
Score = 190 (71.9 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 313 K 313
K
Sbjct: 185 K 185
Score = 163 (62.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 60/233 (25%), Positives = 103/233 (44%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSI 52
AA AL +N + K +++ ++ PS +K T + +F+ +L I
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 53 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 112 FVGHFLRKQE--RETVAIKTKF------------NN--VFVKNLDESTTDEDLKKIFGEY 155
RK + T TK NN V+ + T++ +++ F +
Sbjct: 178 RTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
G I V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 238 GQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 153 (58.9 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 92
S + +GN+FI L + L FS+FG I SC++ D +G S+GFGFV+F++
Sbjct: 92 SSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVA 151
Query: 93 SAQNAIDKLNGMLINDKQVFV 113
SAQ AI+ +NG + +K + V
Sbjct: 152 SAQYAINSMNGAKVENKTLLV 172
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
NL+I L + + L+ +FS FG I SC+VM D +G+S+G GFV F A A+
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 295 MNGKMIVSKPLYVAVA 310
MNG + +K L V A
Sbjct: 160 MNGAKVENKTLLVRFA 175
Score = 129 (50.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 39/154 (25%), Positives = 69/154 (44%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ L + T + L+ IF +G I S VM D G S+ FGFV F++ A A+ +
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 192 LNGKKFDDREWYV------------GKAQKKSEREQELKGQFEQAMKETVDKF--QGL-- 235
+NG K +++ V + ++ + + + Q +
Sbjct: 160 MNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNNNNNNNNNSNNNNTNNIDEQKISN 219
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
N++I+ L D +L ELFS +G + K++ D
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLID 253
Score = 123 (48.4 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
N++I+ L D +L ELFS +G + K++ D + S+G G V + + A A+
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 295 MNGKMIVS--KPLYVAVAQRKEERRARLQA-QFSQMR 328
+NG ++ KPL V A ++E++ + Q Q Q+R
Sbjct: 280 LNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVR 316
Score = 119 (46.9 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
+ N+FI+ L D L + FS++G ++ K+ D + S+G G V++ + +SA NA+
Sbjct: 218 SNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAV 277
Query: 99 DKLNGMLINDKQ 110
LNG ++ D +
Sbjct: 278 KSLNGFILQDPE 289
Score = 112 (44.5 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAE 294
NLY+ NL DD L LFS G I S K++RD + + +G GFV + ++ A+
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINS 442
Query: 295 MNGKMIVSKPLYVA 308
+NG + K + V+
Sbjct: 443 INGVQVGGKTISVS 456
Score = 90 (36.7 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 190
NNVF++ L L ++F YG + + ++ D S+ G V + + A AV+
Sbjct: 219 NNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVK 278
Query: 191 ALNGKKFDDREW-----YVGKAQKKSEREQELKG-QFEQAMK 226
+LNG D E + +K ++ Q+L+ Q Q M+
Sbjct: 279 SLNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVRQNMR 320
Score = 85 (35.0 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 191
N++V NL D L ++F G I S ++RD + + +GFV + D+ A+ +
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINS 442
Query: 192 LNG 194
+NG
Sbjct: 443 ING 445
Score = 54 (24.1 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN 42
++SA A++ +N + NK++ + +++ DP+ + N
Sbjct: 150 VASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSN 188
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 258 (95.9 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 79/275 (28%), Positives = 131/275 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 103 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 153
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 154 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 208
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 209 K-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCK 265
KS E K + + E V++ N +Y + + ++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 266 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
V D KG FV F++ E A+ A+ +NG I
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 190 (71.9 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 313 K 313
K
Sbjct: 185 K 185
Score = 159 (61.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 59/233 (25%), Positives = 102/233 (43%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSI 52
AA AL +N + K +++ ++ PS +K T + +F+ +L I
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 53 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 112 FVGHFLRKQE--RETVAIKTK-------FNN-------VFVKNLDESTTDEDLKKIFGEY 155
RK + T TK N V+ + T++ +++ F +
Sbjct: 178 RTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
G I V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 238 GQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 258 (95.9 bits), Expect = 6.3e-20, P = 6.3e-20
Identities = 79/275 (28%), Positives = 131/275 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 103 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 153
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 154 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 208
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 209 K-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCK 265
KS E K + + E V++ N +Y + + ++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 266 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
V D KG FV F++ E A+ A+ +NG I
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 190 (71.9 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 313 K 313
K
Sbjct: 185 K 185
Score = 159 (61.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 59/233 (25%), Positives = 102/233 (43%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSI 52
AA AL +N + K +++ ++ PS +K T + +F+ +L I
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 53 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 112 FVGHFLRKQE--RETVAIKTK-------FNN-------VFVKNLDESTTDEDLKKIFGEY 155
RK + T TK N V+ + T++ +++ F +
Sbjct: 178 RTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
G I V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 238 GQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 257 (95.5 bits), Expect = 7.4e-20, P = 7.4e-20
Identities = 76/274 (27%), Positives = 130/274 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 103 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 153
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 123
Query: 154 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 208
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 124 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 183
Query: 209 K-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
KS E K +++ + ++ +Y + + ++ +++ FS FG I +V
Sbjct: 184 APKSTYESNTKQLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 241
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
D KG F+ FS+ E A+ A+ +NG I
Sbjct: 242 FPD-----KGYSFIRFSSHESAAHAIVSVNGTTI 270
Score = 190 (71.9 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 120
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 313 K 313
K
Sbjct: 181 K 181
Score = 157 (60.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 57/233 (24%), Positives = 103/233 (44%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSI 52
AA AL +N + K +++ ++ PS +K T + +F+ +L I
Sbjct: 55 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 113
Query: 53 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+
Sbjct: 114 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 173
Query: 112 FVGHFLRKQE--RETVAIKTK---FNNV-----------FVKNLDESTTDEDLKKIFGEY 155
RK + T TK ++ V + + T++ +++ F +
Sbjct: 174 RTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPF 233
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
G I V D K + F+ F + + AA A+ ++NG + + Y GK
Sbjct: 234 GQIMEIRVFPD-----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 281
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 198 (74.8 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 61/213 (28%), Positives = 102/213 (47%)
Query: 20 NNKSIRIMYSHRDPSIRKSGTGN--------IFIKNLDKSIDHKALHDTF-SSFGNILSC 70
N K+ R +D + SGTG +FI N+ + +A+ D G +
Sbjct: 11 NKKANRFHPYSKD---KNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYV 67
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLN-----GMLINDKQVFVGHFLRKQERETV 125
++ D G+S+G G V+F+++E + A++ +N G +N K+ G R+ + T
Sbjct: 68 ELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRTA 127
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A
Sbjct: 128 G--RLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEA 185
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
+A+ NG+ DR +V K KS ++ +
Sbjct: 186 VQAISMFNGQFLFDRPMHV-KMDDKSVPHEDYR 217
Score = 195 (73.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 51/178 (28%), Positives = 91/178 (51%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 37 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 96
Query: 191 ALNGKKFDDREWYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+N K+D G+ K + + E +A++ T + G +++ NL + +
Sbjct: 97 TMN--KYD----LSGRPLNIKEDPDGE---NARRALQRTAGRL-GSTIFVANLDFKVGWK 146
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
KLKE+FS GT+ + D G S+G G V F EA +A++ NG+ + +P++V
Sbjct: 147 KLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 204
Score = 116 (45.9 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L G +++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 517 LSGPMGSGIRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 574
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
G V F +PE A +A MNG I + + V
Sbjct: 575 CGTVRFDSPESAEKACRIMNGIKISGREIDV 605
Score = 38 (18.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMP 477
G G M V MG G+ R +S + P
Sbjct: 473 GMGGMNSVTGGMGMGLDRMSSSFDRMGP 500
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 256 (95.2 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 79/275 (28%), Positives = 131/275 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 103 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 153
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 154 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 208
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 209 K-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCK 265
KS E K + + E V++ N +Y + + ++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 266 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
V D KG FV F++ E A+ A+ +NG I
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 188 (71.2 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 313 K 313
K
Sbjct: 185 K 185
Score = 159 (61.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 59/233 (25%), Positives = 102/233 (43%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSI 52
AA AL +N + K +++ ++ PS +K T + +F+ +L I
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 53 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 112 FVGHFLRKQE--RETVAIKTK-------FNN-------VFVKNLDESTTDEDLKKIFGEY 155
RK + T TK N V+ + T++ +++ F +
Sbjct: 178 RTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
G I V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 238 GQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
>POMBASE|SPAC343.07 [details] [associations]
symbol:mug28 "RNA-binding protein Mug28" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005619 "ascospore wall" evidence=IDA] [GO:0005628 "prospore
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0031321
"ascospore-type prospore assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC343.07 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005628 GO:GO:0005619 eggNOG:COG0724
GO:GO:0031321 PIR:T38656 RefSeq:NP_593427.1 HSSP:Q60900
ProteinModelPortal:Q9UT83 STRING:Q9UT83 EnsemblFungi:SPAC343.07.1
GeneID:2543165 KEGG:spo:SPAC343.07 OMA:YTHIVER OrthoDB:EOG447K4G
NextBio:20804191 Uniprot:Q9UT83
Length = 609
Score = 211 (79.3 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 236 NLYIKNLGDSI--DDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRAL 292
NL++KNL D+I + ++L+ELFS+FG I SC + PS ISKG GFV+FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 293 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 329
+NG + K L+V A+++E+R+ RL A FSQ P
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYP 516
Score = 163 (62.4 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 42 NIFIKNLDKSI--DHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAI 98
N+F+KNLD +I + + L + FS FG I SC +A+ S + SKG+GFV F + A AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 99 DKLNGMLINDKQVFVGHFLRKQERE 123
+ LNG+L K++FV + ++++R+
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 144 (55.7 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 133 NVFVKNLDESTTD--EDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAV 189
N+FVKNLD++ + L+++F ++G I S + + SK +GFV+F + +A +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 229
LNG F + +V A+K+ +R++ L F Q+ V
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYPPVV 519
Score = 100 (40.3 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGN-----ILSCKI--ATDGSGQSKGFGFVQFENKESA 94
+I++ NL + LH+ F FGN +LS K +TD + F F+ FENK SA
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTL-FAFITFENKCSA 79
Query: 95 QNAIDKLNG 103
NAI LNG
Sbjct: 80 DNAIASLNG 88
Score = 48 (22.0 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I I NL + L++ FS+ G+IL I + + V ES I+K +
Sbjct: 272 IGILNLPLKVSPVELYNEFSNHGHILGVAINQSINEDMTHYAEVAVSTYESCIEIIEKFH 331
Query: 103 GMLINDK--QVFV 113
+ Q+F+
Sbjct: 332 AIAYEGSILQLFI 344
Score = 39 (18.8 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSH---RDPSIRKSGTGNIFIKNLDKS 51
SA A+ LN + ++++ Y+H R + ++G I N +K+
Sbjct: 78 SADNAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKA 126
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 256 (95.2 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 79/275 (28%), Positives = 131/275 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 103 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 153
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 154 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 208
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 209 K-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCK 265
KS E K + + E V++ N +Y + + ++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 266 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
V D KG FV F++ E A+ A+ +NG I
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 188 (71.2 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 313 K 313
K
Sbjct: 185 K 185
Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 59/233 (25%), Positives = 102/233 (43%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSI 52
AA AL +N + K +++ ++ PS +K T + +F+ +L I
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 53 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 112 FVGHFLRKQE--RETVAIKTK-------FNN-------VFVKNLDESTTDEDLKKIFGEY 155
RK + T TK N V+ + T++ +++ F +
Sbjct: 178 RTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
G I V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 238 GQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 191 (72.3 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 53/169 (31%), Positives = 88/169 (52%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS--------------GQSKGFGFVQ 87
N+ + L +++ + FSS G I S K+ D S GQS G+GFV
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209
Query: 88 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 147
+ + A+ A++ LNG+ + +K + V F R AIK N++V L ++ T ++
Sbjct: 210 YVRPQDAEQAVNVLNGLRLQNKTIKVS-FARPSSD---AIKGA--NLYVSGLPKTMTQQE 263
Query: 148 LKKIFGEYGTI-TSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNG 194
L+ IF +G I TS ++ G D ++K GF+ F+ ++A +A+ ALNG
Sbjct: 264 LEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 152 (58.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 43/171 (25%), Positives = 86/171 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA- 191
N+ V L ++ T+++++ +F G I S ++RD KS+ + ++ N +K
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRD---KSQVY--IDPLNPQAPSKGQSLG 204
Query: 192 ---LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
+N + D E V + + +K F + + D +G NLY+ L ++
Sbjct: 205 YGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA---RPSSDAIKGANLYVSGLPKTMTQ 261
Query: 249 EKLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRALAEMNG 297
++L+ +F+ FG I + +++++ + KG GF+ F EEA+RA+ +NG
Sbjct: 262 QELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 145 (56.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 33/99 (33%), Positives = 57/99 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++VLN L NK+I++ ++ PS N+++ L K++ + L F+ FG
Sbjct: 216 AEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGA 273
Query: 67 ILSCKIATDGSG--QSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I + Q+KG GF++F+ +E A AI LNG
Sbjct: 274 IITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 118 (46.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 192
+F+ NL T + L ++FG +G + S +++D + K +GFV+ N D+AA A+ AL
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 193 NGKKFDDREWYVGKAQKKSE 212
NG +R V K++
Sbjct: 464 NGYTMGNRVLQVSFKTNKAK 483
Score = 117 (46.2 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEM 295
++I NL ++ L +LF FG + S K+++DP+ KG GFV+ + +EA+ A+ +
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 296 NGKMIVSKPLYVAVAQRK 313
NG + ++ L V+ K
Sbjct: 464 NGYTMGNRVLQVSFKTNK 481
Score = 52 (23.4 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 23/87 (26%), Positives = 34/87 (39%)
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 476
Q P + P + G A P+ + + F M AG ML V + G G A+
Sbjct: 340 QLPAFLNPQLVRRIGGAMHTPVNKGLARFS-PM-AGDMLDVMLPNGLGAAAAAATTLASG 397
Query: 477 PITALSTALANASPEQQRTLLGESLYP 503
P A + N +PE + L + P
Sbjct: 398 PGGAYPIFIYNLAPETEEAALWQLFGP 424
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 252 (93.8 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 86
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 144
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 145 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 201
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 202 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 61/222 (27%), Positives = 103/222 (46%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 78 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 136
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 196
Query: 120 --QERETVAIKTKFNNVF----VKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
+ET + +F +V KN + TD+ +++ F +G I V +
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 256
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 257 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 185 (70.2 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 52/164 (31%), Positives = 90/164 (54%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIAT--DGSGQ--SKGFGFVQFENKESAQNAI 98
+FIKNL+ + L TFS G + SC I+ D +G+ S G+GFVQ++ E+AQ A+
Sbjct: 704 LFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAM 763
Query: 99 DKLNGMLINDKQVFV---------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+L +++ Q+ V G K++++T A K + + V+N+ T ++L+
Sbjct: 764 RQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQT-ARKQTTSKILVRNIPFQATVKELR 822
Query: 150 KIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 192
++F +G + + + + G G S + FGF++F DA KA AL
Sbjct: 823 ELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 175 (66.7 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 52/171 (30%), Positives = 90/171 (52%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM--RDGDGK--SKCFGFVNFENADDAAK 187
+ +F+KNL+ T++E L+K F + G + S + RD GK S +GFV ++ + A K
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM--KETVDKFQGLNLYIKNLGDS 245
A+ L D+ + V K SERE +K QA K+T K + ++N+
Sbjct: 762 AMRQLQHCTVDEHQLEV----KISERE--VKSGVAQAKRKKQTARKQTTSKILVRNIPFQ 815
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEM 295
++L+ELF FG + + ++ + G S +G GF+ F T ++A +A + +
Sbjct: 816 ATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 140 (54.3 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 33/111 (29%), Positives = 61/111 (54%)
Query: 208 QKKSEREQELKGQFEQAMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
+K + + ++ + E+ +E D+ G L+IKNL +E L++ FS+ G + SC +
Sbjct: 674 EKSAVKNDSVQNEEEEEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTI 733
Query: 267 M--RDPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
RD +G +S G GFV + TPE A +A+ ++ + L V +++R+
Sbjct: 734 SKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISERE 784
Score = 140 (54.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 45/207 (21%), Positives = 98/207 (47%)
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+K R + T+F V ++ + ++ +K+ + ++ DG++ + +V
Sbjct: 277 QKSTRPAIEPTTEFT-VKLRGAPFNVKEQQVKEFMMPLKPVAIRFA-KNSDGRNSGYVYV 334
Query: 178 NFENADDAAKAV----EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK---ETVD 230
+ + + +A+ + + G+ + K ++S + E++ F + +K E D
Sbjct: 335 DLRSEAEVERALRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEED 394
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEAS 289
+ L+I+N+ + +E LKELFS+ G ++ D + KG FV + PE A
Sbjct: 395 VAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAV 454
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEER 316
ALA+++G + L+V ++ K+E+
Sbjct: 455 SALAQLDGHTFQGRVLHVMASRLKKEK 481
Score = 124 (48.7 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ + VKNL ++ +K+F ++GT+T + DGK + FGFV F+ +DA KA++
Sbjct: 2 SRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKH 61
Query: 192 LNGKKFDD 199
N K F D
Sbjct: 62 FN-KSFVD 68
Score = 120 (47.3 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 30/106 (28%), Positives = 55/106 (51%)
Query: 112 FVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGK 170
FV +E E VA + +F++N+ + T+EDLK++F ++G ++ + D K
Sbjct: 382 FVRELKDDEEEEDVA---ESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKK 438
Query: 171 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
K F FV + ++A A+ L+G F R +V ++ K E+ +
Sbjct: 439 PKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEKADQ 484
Score = 103 (41.3 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+ +KNL + F+ FG + C + G+ + FGFV F+ +E AQ A+ N
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFN 63
Query: 103 GMLINDKQVFV 113
++ +V V
Sbjct: 64 KSFVDTSRVTV 74
Score = 53 (23.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 200 REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
R W Q S+++ E K EQ KE + LN+ LGD DE +E +
Sbjct: 87 RPWSKHTRQPSSKKDTEEKKTHEQGEKEKKKPKKILNV----LGDLEKDESFQEFLA 139
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 252 (93.8 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 86
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 144
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 145 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 201
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 202 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 187 (70.9 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 61/222 (27%), Positives = 103/222 (46%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 78 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 136
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 196
Query: 120 --QERETVAIKTKFNNVF----VKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
+ET + +F +V KN + TD+ +++ F +G I V +
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 256
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 257 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 253 (94.1 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 86
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 144
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 125
Query: 145 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 201
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 126 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 185
Query: 202 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 186 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 243
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 244 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 281
Score = 187 (70.9 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 77 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 135
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 136 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 195
Query: 120 ----QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
QE T ++ + N KN + TD+ +++ F +G I V +
Sbjct: 196 PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 255
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 256 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 292
Score = 145 (56.1 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 113
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 114 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 173
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 174 MGGQWLGGRQIRTNWATRK 192
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 253 (94.1 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 86
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 144
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 145 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 201
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 202 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 187 (70.9 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 78 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 136
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 196
Query: 120 ----QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
QE T ++ + N KN + TD+ +++ F +G I V +
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 256
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 257 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 253 (94.1 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 86
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 144
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 145 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 201
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 202 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 78 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 136
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 196
Query: 120 ----QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
QE T ++ + N KN + TD+ +++ F +G I V +
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 256
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 257 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 253 (94.1 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 86
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 144
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 145 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 201
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 202 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 78 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 136
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 196
Query: 120 ----QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
QE T ++ + N KN + TD+ +++ F +G I V +
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 256
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 257 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 252 (93.8 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 86
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 144
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 145 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 201
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 202 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 61/222 (27%), Positives = 103/222 (46%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 78 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 136
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 196
Query: 120 --QERETVAIKTKFNNVF----VKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
+ET + +F +V KN + TD+ +++ F +G I V +
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 256
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 257 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 252 (93.8 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 86
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 144
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 145 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 201
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 202 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 61/222 (27%), Positives = 103/222 (46%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 78 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 136
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--- 119
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 196
Query: 120 --QERETVAIKTKFNNVF----VKN-------LDESTTDEDLKKIFGEYGTITSAVVMRD 166
+ET + +F +V KN + TD+ +++ F +G I V +
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 256
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + AA A+ ++NG + + Y GK
Sbjct: 257 -----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 235 (87.8 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 71/249 (28%), Positives = 114/249 (45%)
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV-FVGHFLRKQERET 124
N++S K T S QS+ F + + L G + F+ + + + E +
Sbjct: 7 NVVSIK-PTIFSFQSESFTPLHTRVNVFSSKPFPSLAGTFSRSSRTRFIPYAVTETEEKP 65
Query: 125 VAIKTKFN---NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFE 180
A+ V++ N+ + T+E L K+ E+G + VM D G+S+ FGF +
Sbjct: 66 AALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ +DA VE LNG + RE V +K +L + VD +Y+
Sbjct: 126 SVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLS-VLQSEDSAFVDS--PYKVYVG 182
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--GSGFVAFSTPEEASRALAEMNGK 298
NL ++ E L+ LFSE G + S KV R P G SK G GFV FS+ E+ A+ +N
Sbjct: 183 NLAKTVTKEMLENLFSEKGKVVSAKVSRVP-GTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
Query: 299 MIVSKPLYV 307
++ + + V
Sbjct: 242 LLEGQKIRV 250
Score = 188 (71.2 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 53/189 (28%), Positives = 92/189 (48%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
DPS ++I N+ +++ ++ L G + ++ D SG+S+ FGF ++
Sbjct: 69 DPS--SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRK-----------QERETVAIKTKFNNVFVKNL 139
E A ++KLNG + +++ V + K Q ++ + + + V+V NL
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKV-NITEKPIASSPDLSVLQSEDSAFVDSPYK-VYVGNL 184
Query: 140 DESTTDEDLKKIFGEYGTITSAVVMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198
++ T E L+ +F E G + SA V R G KS FGFV F + +D A+ ALN +
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 199 DREWYVGKA 207
++ V KA
Sbjct: 245 GQKIRVNKA 253
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 233 (87.1 bits), Expect = 9.3e-19, P = 9.3e-19
Identities = 76/280 (27%), Positives = 127/280 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 103 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 214
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K KS E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 215 QELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-- 270
K + + E V++ N +Y + + ++ +++ FS FG I +V D
Sbjct: 184 SNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
S + + + P + NG M+ ++P VA
Sbjct: 241 SFVRQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVA 280
Score = 170 (64.9 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 313 K 313
K
Sbjct: 174 K 174
Score = 158 (60.7 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAP 117
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 231 (86.4 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 48/75 (64%), Positives = 60/75 (80%)
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
KE FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQ
Sbjct: 3 KE-FSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 312 RKEERRARLQAQFSQ 326
RKEER+A L Q+ Q
Sbjct: 61 RKEERQAHLTNQYMQ 75
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 2 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 209 KKSEREQELKGQFEQAM 225
+K ER+ L Q+ Q M
Sbjct: 61 RKEERQAHLTNQYMQRM 77
Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++ K ++V RK+
Sbjct: 5 FSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 121 ERE 123
ER+
Sbjct: 64 ERQ 66
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 246 (91.7 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 72/264 (27%), Positives = 125/264 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + F G SCK+ D +G + FV+F A ++ +N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 103 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G I K+V V Q+++T F+ VFV +L T +D++ F +G I+
Sbjct: 69 GRKIMGKEVKVNWATSPSSQKKDT---SNHFH-VFVGDLSPEITTDDIRAAFAPFGRISD 124
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 214
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K K+ E
Sbjct: 125 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYE 184
Query: 215 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
K F++ + ++ +Y + + ++ +++ FS FG I +V D
Sbjct: 185 TNTKHLSFDEVVNQSSPS--NCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD---- 238
Query: 274 SKGSGFVAFSTPEEASRALAEMNG 297
KG FV F++ E A+ A+ +NG
Sbjct: 239 -KGYSFVRFNSHESAAHAIVSVNG 261
Score = 186 (70.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 59/222 (26%), Positives = 102/222 (45%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA +L +N + K +++ ++ PS +K T N +F+ +L I + F+
Sbjct: 60 AAASLAAMNGRKIMGKEVKVNWA-TSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAP 118
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE- 121
FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK
Sbjct: 119 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 178
Query: 122 -RETVAIKTK---FNNV-----------FVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
+ T TK F+ V + + T++ +++ F +G I V D
Sbjct: 179 PKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD 238
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 206
K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 239 -----KGYSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGK 275
Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 49/181 (27%), Positives = 90/181 (49%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++FG+ G S ++ D G + FV F AA ++ A+N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++ K+T + F ++++ +L I + ++
Sbjct: 69 GRKIMGKEVKVNWATSPSSQK-----------KDTSNHF---HVFVGDLSPEITTDDIRA 114
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 115 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 174
Query: 313 K 313
K
Sbjct: 175 K 175
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 137 (53.3 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+FV NLD + LK++FG GT+ A V D DGKS+ G V FE +A +A+ N
Sbjct: 214 IFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFN 273
Query: 194 GKKFDDREWYVGKAQKKS 211
G+ DR+ +V K KS
Sbjct: 274 GQMLFDRQMHV-KMDDKS 290
Score = 130 (50.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G +++ NL + +KLKE+F GT+ V D G S+G G V F P EA +A++
Sbjct: 211 GATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAIS 270
Query: 294 EMNGKMIVSKPLYV 307
NG+M+ + ++V
Sbjct: 271 MFNGQMLFDRQMHV 284
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 93
S R G IF++NL + + L + FS G ++ +I + +G+SKG G V+F++ ES
Sbjct: 473 SDRSKGGCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPES 531
Query: 94 AQNAIDKLNGMLINDKQVFV 113
A+ A +NG IN ++V V
Sbjct: 532 AEKACRLMNGTKINGREVDV 551
Score = 120 (47.3 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 33/104 (31%), Positives = 48/104 (46%)
Query: 14 LNFTP--LNNKSIRIMYSHRDPSIRKSGT--GNIFIKNLDKSIDHKALHDTFSSFGNILS 69
+N P NN +I H S ++G IF+ NLD + K L + F G +
Sbjct: 185 INIPPSIANNPNI----PHEIISALQAGRLGATIFVANLDFKVGWKKLKEVFGMAGTVRR 240
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
+ D G+S+G G V FE A AI NG ++ D+Q+ V
Sbjct: 241 ADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQMHV 284
Score = 115 (45.5 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G ++++NL + +KLKE FS G + ++ + +G SKG G V F +PE A +A
Sbjct: 479 GCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACR 537
Query: 294 EMNGKMI 300
MNG I
Sbjct: 538 LMNGTKI 544
Score = 97 (39.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 120 QERETVAIK--TKFNNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGF 176
+ER A K T N VF+ N+ + +K + E G +T + +DG+GKS+ G
Sbjct: 67 KERSGGADKKTTHRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGV 126
Query: 177 VNFENADDAAKAVEA-----LNGKKFDDREWYVGK-AQKKSEREQELKG 219
V F++ + KA+E LNG+ + +E G+ A++ +R + G
Sbjct: 127 VEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHARRVLQRSGRMYG 175
Score = 92 (37.4 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 28/100 (28%), Positives = 46/100 (46%)
Query: 28 YSHRDPSIRKSGT--GNIFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDGSGQSKGFG 84
Y R K T +FI N+ +A+ D G + ++ DG G+S+G G
Sbjct: 66 YKERSGGADKKTTHRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCG 125
Query: 85 FVQFENKESAQNAID-----KLNGMLINDKQVFVGHFLRK 119
V+F+++E + AI+ LNG +N K+ G R+
Sbjct: 126 VVEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHARR 165
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 177 (67.4 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 38/119 (31%), Positives = 70/119 (58%)
Query: 78 GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVK 137
GQS G+GFV + E A+ A++ LNG+ + +K + V + + E++ K N++V
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSY--ARPSSESI----KGANLYVS 135
Query: 138 NLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGK 195
L ++ + DL+ +F +G I ++ ++ D G SK GF+ F+ ++A +A++ LNGK
Sbjct: 136 GLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 169 (64.5 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 36/98 (36%), Positives = 57/98 (58%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L NK I++ Y+ PS N+++ L K++ L F+SFG
Sbjct: 98 AEKAVNTLNGLRLQNKVIKVSYAR--PSSESIKGANLYVSGLPKNLSQPDLEGMFASFGK 155
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D SG SKG GF++F+ + A+ AI +LNG
Sbjct: 156 IITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 166 (63.5 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 45/172 (26%), Positives = 85/172 (49%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+ V L ++ T E+++ +F G + S ++RD + + + A + ++L
Sbjct: 27 NLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLP-ASLTALNPALQQGQSL 85
Query: 193 -----NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
N + +D E V + + +K + + E++ +G NLY+ L ++
Sbjct: 86 GYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESI---KGANLYVSGLPKNLS 142
Query: 248 DEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK 298
L+ +F+ FG I + +++ D SG+SKG GF+ F EA RA+ E+NGK
Sbjct: 143 QPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 123 (48.4 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
+FV NL T + L ++FG +G + S V+RD K K FGFV N D+A A+++L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 193 NGKKFDDREWYVGKAQKKSE 212
NG +R V K++
Sbjct: 335 NGYTLGNRVLQVSFKTNKTK 354
Score = 109 (43.4 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 292
G +++ NL ++ L +LF FG + S KV+RD + KG GFV + +EA A+
Sbjct: 272 GWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAI 331
Query: 293 AEMNGKMIVSKPLYVAVAQRK 313
+NG + ++ L V+ K
Sbjct: 332 QSLNGYTLGNRVLQVSFKTNK 352
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 228 (85.3 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 74/279 (26%), Positives = 126/279 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 103 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKAAFAPFGRISD 119
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 214
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K KS E
Sbjct: 120 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 179
Query: 215 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--S 271
K +++ + ++ +Y + + ++ +++ FS FG I +V D S
Sbjct: 180 SNTKQLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 237
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
I + + P + NG M+ ++P VA
Sbjct: 238 FIRQTQSSAPWMGPNYSVPPPQGQNGGMLPNQPAGYRVA 276
Score = 170 (64.9 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 109
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 110 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 169
Query: 313 K 313
K
Sbjct: 170 K 170
Score = 158 (60.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+
Sbjct: 55 AAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAP 113
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK
Sbjct: 114 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 170
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 186 (70.5 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 58/207 (28%), Positives = 97/207 (46%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 192
+FV L S E L+++F + G + V+ + K+ + FG+V F +D +A++ +
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQA---MKETVDKFQGL-----NLYIKNLGD 244
F+ + V A+KK + + KG+ E + KE K + L I+NL
Sbjct: 66 T--TFEGCKINVTIAKKKQRNKSKEKGENENSEPPKKEPKPKKPKVADKKARLIIRNLSF 123
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
++ LK +F ++G + + R P G +G FV F EA +AL MN K I +
Sbjct: 124 KCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRT 183
Query: 305 LYV--AVAQRKEERRARLQAQFSQMRP 329
+ V AVA+ K + A + RP
Sbjct: 184 VAVDWAVAKDKYKNTQSASAP-GEKRP 209
Score = 149 (57.5 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 33/106 (31%), Positives = 58/106 (54%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
K ++ VA K + ++NL +++DLK +FG+YG + + R DGK + F FV
Sbjct: 103 KPKKPKVADKKA--RLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQ 160
Query: 179 FENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQ 220
F+N +A KA++++N K+ R +W V K + K+ + G+
Sbjct: 161 FKNLLEAGKALKSMNMKEIKGRTVAVDWAVAKDKYKNTQSASAPGE 206
Score = 122 (48.0 bits), Expect = 0.00055, P = 0.00055
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 292
GL L++ L S E+L+ELFS+ G + C V+ + S +G G+V FS E+ RAL
Sbjct: 3 GLTLFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 62
Query: 293 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 329
E+ + V +A++K+ +++ + + P
Sbjct: 63 KEIT--TFEGCKINVTIAKKKQRNKSKEKGENENSEP 97
Score = 108 (43.1 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 34/129 (26%), Positives = 63/129 (48%)
Query: 204 VGKAQKKSEREQELKGQFEQAMKETV--DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 261
+ ++ SE +++ Q + K + D +G ++I+NL ++E+L EL +FG +
Sbjct: 294 LAQSDTNSEEQEDEDMQISKKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGDL 353
Query: 262 TSCKVMRDP-SGISKGSGFVAFSTPEEASRAL------AEMNGKMIVSKPLYVAVAQRKE 314
+++ P + SKG F F T E A + L E G + + L V +A ++
Sbjct: 354 KYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLKLDGRQLRVDLAVTRD 413
Query: 315 ERRARLQAQ 323
E A+LQ +
Sbjct: 414 EA-AKLQTK 421
Score = 93 (37.8 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+ I+NL L F +G +L I G+ +GF FVQF+N A A+ +N
Sbjct: 116 LIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMN 175
Query: 103 GMLINDKQVFVGHFLRKQE 121
I + V V + K +
Sbjct: 176 MKEIKGRTVAVDWAVAKDK 194
Score = 90 (36.7 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+F+ L S + L + FS G + C + T+ GS +GFG+V F E Q A+ ++
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Score = 88 (36.0 bits), Expect = 4.2e-16, Sum P(3) = 4.2e-16
Identities = 36/125 (28%), Positives = 54/125 (43%)
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF-----SEFGT-ITS 263
K ER + LK Q +K+ L + NL +DD++L++L E G +
Sbjct: 457 KRERFELLK---HQKLKDQNIFVSQTRLCLHNLPKGVDDKELRKLLLNATRGEKGVRLKE 513
Query: 264 CKVMRDPSGI-------SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
C+VMRD G+ S G F F E A AL +N + PL + + E
Sbjct: 514 CRVMRDLKGVHGKVKGQSLGYAFAEFQEHEHALTALRHINNNPEIFGPLKRPIVEFSLED 573
Query: 317 RARLQ 321
R +L+
Sbjct: 574 RRKLK 578
Score = 86 (35.3 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 33/133 (24%), Positives = 61/133 (45%)
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGF 176
+K++R+ + + VF++NL + +E+L ++ ++G + +V+ SK F
Sbjct: 313 KKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAF 372
Query: 177 VNFENADDAAKAVEALN------GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 230
F + A K +EA + G K D R+ V A R++ K Q ++ K T
Sbjct: 373 AQFMTQEAAQKCLEAASPETEGGGLKLDGRQLRVDLAVT---RDEAAKLQTKKVKKPTGT 429
Query: 231 KFQGLNLYIKNLG 243
+ NLY+ G
Sbjct: 430 R----NLYLAREG 438
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 243 (90.6 bits), Expect = 6.0e-18, P = 6.0e-18
Identities = 73/267 (27%), Positives = 134/267 (50%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
+++I +L +D L F G ++S K+ + +GQS+G+GF++F + +A+ +
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 101 LNGMLI-NDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YG 156
NG L+ N +Q F ++ L ER + + + +FV +L TD L++ F Y
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAE---HTIFVGDLAADVTDYILQETFKSVYS 201
Query: 157 TITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
++ A V+ D G+SK +GFV F + + +A+ +NG R +G A K
Sbjct: 202 SVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGT 261
Query: 216 ELKGQFE--QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
K ++ QA + D +++ L ++ +E L+++FS +G + K++ +G
Sbjct: 262 PQKATYQNPQATQGESDP-NNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---AG- 316
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMI 300
K GFV F T A +AL+ +NG +
Sbjct: 317 -KRCGFVQFGTRASAEQALSSLNGTQL 342
Score = 180 (68.4 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 59/234 (25%), Positives = 113/234 (48%)
Query: 5 SSAARALDVLNFTPLNN--KSIRIMYSHRDPSIRK--SGTGNIFIKNLDKSIDHKALHDT 60
++A L N T + N ++ R+ ++ R+ S IF+ +L + L +T
Sbjct: 136 AAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQET 195
Query: 61 FSS-FGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
F S + ++ K+ TD +G+SKG+GFV+F ++ A+ ++NG+L + + + +G
Sbjct: 196 FKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAAN 255
Query: 119 K-----------QERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 165
K Q + ++ NN +FV LD + +E L+++F YG + ++
Sbjct: 256 KKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVA 315
Query: 166 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQKKSEREQ 215
GK +C GFV F A +A+ +LNG + + W + K++++ Q
Sbjct: 316 ---GK-RC-GFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQ 364
Score = 136 (52.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 50/174 (28%), Positives = 82/174 (47%)
Query: 145 DED-LKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 202
DE+ L F G + SA V+R+ G+S+ +GF+ F + A ++ NG + E
Sbjct: 96 DENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVE- 154
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF-SEFGTI 261
Q L G E+ D +++ +L + D L+E F S + ++
Sbjct: 155 -----QNFRMNWASL-GAGERR-----DDSAEHTIFVGDLAADVTDYILQETFKSVYSSV 203
Query: 262 TSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314
KV+ D +G SKG GFV F+ E RA+ EMNG + ++P+ + A K+
Sbjct: 204 RGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKK 257
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 135 (52.6 bits), Expect = 6.6e-18, Sum P(3) = 6.6e-18
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELK 218
NG+ DR +V K KS +E +
Sbjct: 293 FNGQFLFDRPMHV-KMDDKSVPHEEYR 318
Score = 127 (49.8 bits), Expect = 8.1e-11, Sum P(3) = 8.1e-11
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 294 EMNGKMIVSKPLYVAVAQRK---EERRA 318
NG+ + +P++V + + EE R+
Sbjct: 292 MFNGQFLFDRPMHVKMDDKSVPHEEYRS 319
Score = 123 (48.4 bits), Expect = 6.6e-18, Sum P(3) = 6.6e-18
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L G M+E + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 506 LSGPMGSGMRERIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 563
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
G V F +PE A +A MNG I + + V
Sbjct: 564 CGTVRFDSPESAEKACRIMNGIKISGREIDV 594
Score = 117 (46.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 34/103 (33%), Positives = 47/103 (45%)
Query: 13 VLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
++N P LNN +I + R T IF+ NLD + K L + FS G +
Sbjct: 205 LMNLPPSILNNPNIPPEVISNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRA 262
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
I D G+S+G G V FE A AI NG + D+ + V
Sbjct: 263 DIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 305
Score = 115 (45.5 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
I +K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A
Sbjct: 518 IGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAE 576
Query: 187 KAVEALNGKKFDDRE 201
KA +NG K RE
Sbjct: 577 KACRIMNGIKISGRE 591
Score = 104 (41.7 bits), Expect = 8.1e-11, Sum P(3) = 8.1e-11
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 77 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNV 134
S S G V+ EN ESA+ L K+ H K + K N V
Sbjct: 46 SSSSNG---VKMENDESAKEEKSDLKEKSTGSKKANRFHPYSKDKNSGAGEKKGPNRNRV 102
Query: 135 FVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
F+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E +N
Sbjct: 103 FISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 162
Query: 194 GKKFD 198
K+D
Sbjct: 163 --KYD 165
Score = 84 (34.6 bits), Expect = 6.6e-18, Sum P(3) = 6.6e-18
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 43 IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+FI N+ + +A+ D G + ++ D G+S+G G V+F+++E + A++ +
Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161
Query: 102 N 102
N
Sbjct: 162 N 162
Score = 42 (19.8 bits), Expect = 8.1e-11, Sum P(3) = 8.1e-11
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMP 477
G GSM V MG G+ R +S + P
Sbjct: 462 GMGSMNSVTGGMGMGLDRMSSSFDRMGP 489
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 132 (51.5 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 239
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELK 218
NG+ DR +V K KS ++ +
Sbjct: 240 FNGQFLFDRPMHV-KMDDKSVPHEDYR 265
Score = 126 (49.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 179 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 238
Query: 294 EMNGKMIVSKPLYV 307
NG+ + +P++V
Sbjct: 239 MFNGQFLFDRPMHV 252
Score = 123 (48.4 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L G M+E + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 439 LSGPMGSGMRERIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 496
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
G V F +PE A +A MNG I + + V
Sbjct: 497 CGTVRFDSPESAEKACRIMNGIKISGREIDV 527
Score = 118 (46.6 bits), Expect = 0.00094, P = 0.00094
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 36 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 450 RIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 508
Query: 95 QNAIDKLNGMLINDKQVFV 113
+ A +NG+ I+ +++ V
Sbjct: 509 EKACRIMNGIKISGREIDV 527
Score = 116 (45.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 34/103 (33%), Positives = 47/103 (45%)
Query: 13 VLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
++N P LNN +I + R T IF+ NLD + K L + FS G +
Sbjct: 152 LMNLPPSILNNPNIPPEVITNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRA 209
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
I D G+S+G G V FE A AI NG + D+ + V
Sbjct: 210 DIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 252
Score = 115 (45.5 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
I +K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A
Sbjct: 451 IGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAE 509
Query: 187 KAVEALNGKKFDDRE 201
KA +NG K RE
Sbjct: 510 KACRIMNGIKISGRE 524
Score = 94 (38.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 29/113 (25%), Positives = 51/113 (45%)
Query: 89 ENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNVFVKNLDESTTDE 146
EN E + +L + +K+ H K + K N VF+ N+ +
Sbjct: 2 ENDEPVKEEKSELKEKSMGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQ 61
Query: 147 DLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198
+K + E G +T + +D +GKS+ G V F++ + KA+E +N K+D
Sbjct: 62 AIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN--KYD 112
Score = 85 (35.0 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 20 NNKSIRIMYSHRDPSIRKSGTGN--------IFIKNLDKSIDHKALHDTF-SSFGNILSC 70
N K+ R +D + SGTG +FI N+ + +A+ D G +
Sbjct: 21 NKKANRFHPYSKD---KNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYV 77
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
++ D G+S+G G V+F+++E + A++ +N
Sbjct: 78 ELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 109
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 437 PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
P+G +++ P G G M V MG G+ R +S + P
Sbjct: 384 PVGSGIKN-PGG-GMGGMNSVTGGMGMGLDRMSSSFDRMGP 422
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 161 (61.7 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 52/185 (28%), Positives = 89/185 (48%)
Query: 18 PLN-NKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
P+N ++SI I H + K +FI + ++++ K L F FG I + D
Sbjct: 114 PMNGSESISI---HPENGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKD 170
Query: 76 G-SGQSKGFGFVQFENKESA---QNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF 131
+G KG F+ + +ESA QNA+ + + + + V + + E+ + +
Sbjct: 171 RYTGMHKGCAFLTYCARESAIKAQNALHEQKTLPGMTRPIQV----KPADSES---RGED 223
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+FV L++ T+ED+ ++F YG I V+R DG SK FV F +A A+ A
Sbjct: 224 RKLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISA 283
Query: 192 LNGKK 196
L+G +
Sbjct: 284 LHGSQ 288
Score = 151 (58.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 47/165 (28%), Positives = 77/165 (46%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+F+ + + ++DLK +F ++G I V++D G K F+ + + A KA AL
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K Q K + E +G+ D+ L++ L +E +
Sbjct: 198 HEQK--TLPGMTRPIQVKPA-DSESRGE---------DR----KLFVGMLNKQQTEEDVY 241
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
LF +G I C V+R P G SKG FV FST EA A++ ++G
Sbjct: 242 RLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHG 286
Score = 136 (52.9 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L ++F FGT+ S KV D + SK GFV+F P A A
Sbjct: 510 EGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAA 569
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 570 IQAMNGFQIGMKRLKVQLKRPKDASR 595
Score = 130 (50.8 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L ++F +GT+ S+ V D +SKCFGFV+F+N A A++A
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 192 LNG 194
+NG
Sbjct: 573 MNG 575
Score = 129 (50.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L F FG ++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 573 MNGFQIGMKRLKV 585
Score = 95 (38.5 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F+ L+K + ++ F +G I C + G SKG FV+F AQ+AI L+
Sbjct: 226 LFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALH 285
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
G + + G + + ++ KF + D+ T ++++ G++G A+
Sbjct: 286 G----SQTMPTGSDSLLPQGASSSLVVKFADT-----DKERTIRRMQQMVGQFGIFNPAI 336
Query: 163 VM 164
+
Sbjct: 337 AL 338
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 134 (52.2 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 224
NG+ DR +V K KS ++ + +A
Sbjct: 293 FNGQFLFDRPMHV-KMDDKSVPHEDYRSHDSKA 324
Score = 126 (49.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 294 EMNGKMIVSKPLYV 307
NG+ + +P++V
Sbjct: 292 MFNGQFLFDRPMHV 305
Score = 120 (47.3 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L G M++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 449 LSGPMGSGMRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 506
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
G V F +PE A +A MNG I + + V
Sbjct: 507 CGTVRFDSPESAEKACRIMNGIKISGREIDV 537
Score = 118 (46.6 bits), Expect = 0.00096, P = 0.00096
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 36 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 460 RIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 518
Query: 95 QNAIDKLNGMLINDKQVFV 113
+ A +NG+ I+ +++ V
Sbjct: 519 EKACRIMNGIKISGREIDV 537
Score = 117 (46.2 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 34/103 (33%), Positives = 47/103 (45%)
Query: 13 VLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
++N P LNN +I + R T IF+ NLD + K L + FS G +
Sbjct: 205 LMNLPPSILNNPNIPPEVISNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRA 262
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
I D G+S+G G V FE A AI NG + D+ + V
Sbjct: 263 DIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 305
Score = 115 (45.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
I +K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A
Sbjct: 461 IGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAE 519
Query: 187 KAVEALNGKKFDDRE 201
KA +NG K RE
Sbjct: 520 KACRIMNGIKISGRE 534
Score = 103 (41.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 34/125 (27%), Positives = 56/125 (44%)
Query: 77 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNV 134
S S G V+ EN ES + +L +K+ H K + K N V
Sbjct: 46 SSSSNG---VKMENDESVKEEKSELKEKSTGNKKANRFHPYSKDKNSGTGEKKGPNRNRV 102
Query: 135 FVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
F+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E +N
Sbjct: 103 FISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 162
Query: 194 GKKFD 198
K+D
Sbjct: 163 --KYD 165
Score = 85 (35.0 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 20 NNKSIRIMYSHRDPSIRKSGTGN--------IFIKNLDKSIDHKALHDTF-SSFGNILSC 70
N K+ R +D + SGTG +FI N+ + +A+ D G +
Sbjct: 74 NKKANRFHPYSKD---KNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYV 130
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
++ D G+S+G G V+F+++E + A++ +N
Sbjct: 131 ELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 162
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 133 (51.9 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 183 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 242
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELK 218
NG+ DR +V K KS ++ +
Sbjct: 243 FNGQFLFDRPMHV-KMDDKSVPHEDFR 268
Score = 126 (49.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 182 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 241
Query: 294 EMNGKMIVSKPLYV 307
NG+ + +P++V
Sbjct: 242 MFNGQFLFDRPMHV 255
Score = 122 (48.0 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
G AMKE + +G ++++NL + +KLKE FS+ G + ++ + +G SKG G
Sbjct: 449 GPMGGAMKERLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCG 506
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYV 307
V F +PE A +A MNG I + + V
Sbjct: 507 TVRFDSPESAEKACRIMNGIKISGREIDV 535
Score = 119 (46.9 bits), Expect = 0.00074, P = 0.00074
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 36 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 458 RLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 516
Query: 95 QNAIDKLNGMLINDKQVFV 113
+ A +NG+ I+ +++ V
Sbjct: 517 EKACRIMNGIKISGREIDV 535
Score = 119 (46.9 bits), Expect = 0.00074, P = 0.00074
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 76 GSGQSKGFGFVQFENKESAQNAIDK-LNGML---INDKQVFVGHFLRKQERETVAIKTKF 131
GSG S G G + + S + + + G L I+ + FV + +E + +K
Sbjct: 406 GSGMSGGMGGMGMDRMSSGFDRMGPAMGGGLDRNIDIDRGFVPGPMGGAMKERLG--SKG 463
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A KA
Sbjct: 464 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 522
Query: 192 LNGKKFDDRE 201
+NG K RE
Sbjct: 523 MNGIKISGRE 532
Score = 115 (45.5 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
IF+ NLD + K L + FS G + I D G+S+G G V FE A AI N
Sbjct: 185 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 244
Query: 103 GMLINDKQVFV 113
G + D+ + V
Sbjct: 245 GQFLFDRPMHV 255
Score = 91 (37.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 50 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 109
Query: 191 ALNGKKFD 198
+N K+D
Sbjct: 110 TMN--KYD 115
Score = 84 (34.6 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 43 IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+FI N+ + +A+ D G + ++ D G+S+G G V+F+++E + A++ +
Sbjct: 52 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 111
Query: 102 N 102
N
Sbjct: 112 N 112
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 172 (65.6 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 58/200 (29%), Positives = 93/200 (46%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+F+ + + ++DLK IF +YG I V++D G K F+ + + A KA AL
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ Y G + + + +G+ E D+ L++ LG DE ++
Sbjct: 69 HYSS-----GYSGMNRPIQVKPADSEGRGE-------DR----KLFVGMLGKQQSDEDVR 112
Query: 253 ELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVA 308
++F FG I C V+R P G SK G FV F + EA A+ ++G + S L V
Sbjct: 113 KIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVK 172
Query: 309 VAQRKEERRAR-LQAQFSQM 327
A ++ER R +Q SQ+
Sbjct: 173 FADTEKERGVRRMQQVTSQL 192
Score = 152 (58.6 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 44/159 (27%), Positives = 80/159 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESA---QNAI 98
+FI + ++++ K L F +G I + D +G KG F+ + +ESA Q+A+
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+G ++ + V + + E + + +FV L + +DED++KIF +G I
Sbjct: 69 HYSSGYSGMNRPIQV----KPADSEG---RGEDRKLFVGMLGKQQSDEDVRKIFEPFGGI 121
Query: 159 TSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F++ +A A+ +L+G +
Sbjct: 122 DECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSR 160
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 35 IRKSGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFE 89
+R++ TG N+FI +L + + F FGN++S K+ D + QSK FGFV F+
Sbjct: 347 VREANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFD 406
Query: 90 NKESAQNAIDKLNGMLINDKQVFV 113
N SAQ AI +NG I K++ V
Sbjct: 407 NPASAQTAIQAMNGFQIGMKRLKV 430
Score = 139 (54.0 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 35/105 (33%), Positives = 55/105 (52%)
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSG 272
+Q+L+ F Q ++E +G N++I +L D ++ ++F FG + S KV D +
Sbjct: 337 QQQLQS-FSQCVREANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATN 395
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 396 QSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 440
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
NVF+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 358 NVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 417
Query: 192 LNG 194
+NG
Sbjct: 418 MNG 420
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 133 (51.9 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 251 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 310
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELK 218
NG+ DR +V K KS ++ +
Sbjct: 311 FNGQFLFDRPMHV-KMDDKSVPHEDFR 336
Score = 126 (49.4 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 250 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 309
Query: 294 EMNGKMIVSKPLYV 307
NG+ + +P++V
Sbjct: 310 MFNGQFLFDRPMHV 323
Score = 122 (48.0 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
G AMKE + +G ++++NL + +KLKE FS+ G + ++ + +G SKG G
Sbjct: 524 GPMGGAMKERLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCG 581
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYV 307
V F +PE A +A MNG I + + V
Sbjct: 582 TVRFDSPESAEKACRIMNGIKISGREIDV 610
Score = 119 (46.9 bits), Expect = 0.00089, P = 0.00089
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 36 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 533 RLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 591
Query: 95 QNAIDKLNGMLINDKQVFV 113
+ A +NG+ I+ +++ V
Sbjct: 592 EKACRIMNGIKISGREIDV 610
Score = 115 (45.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
IF+ NLD + K L + FS G + I D G+S+G G V FE A AI N
Sbjct: 253 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 312
Query: 103 GMLINDKQVFV 113
G + D+ + V
Sbjct: 313 GQFLFDRPMHV 323
Score = 113 (44.8 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 188
+K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A KA
Sbjct: 536 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKA 594
Query: 189 VEALNGKKFDDRE 201
+NG K RE
Sbjct: 595 CRIMNGIKISGRE 607
Score = 96 (38.9 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 36/136 (26%), Positives = 66/136 (48%)
Query: 73 ATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV-FVGHFLR----KQERETVA 126
AT+ G G + G V+ +N E+A+ + K + +G+ R +E+ T +
Sbjct: 53 ATESGGGSANG---VKMDNDETAKEEKAPVKEKHAKPKAIPSLGNKNRFHPYSKEKSTGS 109
Query: 127 IKTKF---NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K N VF+ N+ + +K + E G +T + +D +GKS+ G V F++
Sbjct: 110 AEKKAINRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDE 169
Query: 183 DDAAKAVEALNGKKFD 198
+ KA+E +N K+D
Sbjct: 170 EFVKKALETMN--KYD 183
Score = 84 (34.6 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 43 IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+FI N+ + +A+ D G + ++ D G+S+G G V+F+++E + A++ +
Sbjct: 120 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 179
Query: 102 N 102
N
Sbjct: 180 N 180
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 176 (67.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 58/207 (28%), Positives = 95/207 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+F+ + + ++DLK IF ++G I V++D G K F+ + + A KA AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K + + + + E +G+ D+ L++ LG DE ++
Sbjct: 69 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVR 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
+F FG I C V+R P G SKG FV F T EA A+ ++G + S L V
Sbjct: 113 RMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKF 172
Query: 310 AQRKEERRAR-LQA---QFSQMRPVAM 332
A ++ER R +Q Q P+A+
Sbjct: 173 ADTEKERGLRRMQQVANQLGMFSPIAL 199
Score = 164 (62.8 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 45/156 (28%), Positives = 76/156 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+FI + +++D K L F FG I + D +G KG F+ + +ESA A L
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + TDED++++F +G I
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDE 123
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F+ +A A+ AL+G +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSR 159
Score = 136 (52.9 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FGN++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 438 MNGFQIGMKRLKV 450
Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A+++
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 192 LNG 194
+NG
Sbjct: 438 MNG 440
Score = 126 (49.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G N++I +L D ++ ++F FG + S KV D + SK GFV+F P A A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 435 IQSMNGFQIGMKRLKVQLKRPKDANR 460
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 208 (78.3 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 52/182 (28%), Positives = 91/182 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG--FGFVQFENKESAQNAIDK 100
+++ LD + L F + G+++S KI D + SKG +GFV+F++ +A+ A+
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG I+ ++ V + F+ +FV +L DE L + F +G+++
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKEDTSNHFH-IFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQ 215
A VM D G+S+ +GFV F DA KA+ +++G+ R W K Q ++Q
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSISQQQ 270
Query: 216 EL 217
+
Sbjct: 271 AM 272
Score = 208 (78.3 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 57/197 (28%), Positives = 104/197 (52%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC--FGFVNFENADDAAKAVEA 191
++V LD T++ LK+IF G + S ++ D + SK +GFV F++ A +A++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG++ E V A + + +E +T + F ++++ +L + ++DE L
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKE----------DTSNHF---HIFVGDLSNEVNDEVL 198
Query: 252 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ FS FG+++ +VM D +G S+G GFVAF +A +AL M+G+ + S+ + A
Sbjct: 199 LQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWA 258
Query: 311 QRKEERRARLQAQFSQM 327
+K + Q + M
Sbjct: 259 NQKGQPSISQQQAMAAM 275
Score = 148 (57.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 29/110 (26%), Positives = 61/110 (55%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFS 62
+A RA+ LN ++ IR+ ++++ + K T N IF+ +L ++ + L FS
Sbjct: 144 AAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 203
Query: 63 SFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+FG++ ++ D +G+S+G+GFV F + A+ A+ ++G + + +
Sbjct: 204 AFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Score = 78 (32.5 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
Y+ NL + LF FG + ++ D +G F+ T E A+ A+ ++NG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 298 KMIVSKPL 305
+ +PL
Sbjct: 366 YNVNGRPL 373
Score = 72 (30.4 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 135 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
+V NL TT D+ +F +G + + D + F F+ + ++AA A+ LNG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 195 KKFDDR 200
+ R
Sbjct: 366 YNVNGR 371
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 237 (88.5 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 70/270 (25%), Positives = 130/270 (48%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQN 96
S +++I +L + +D + F+ G S K+ + +GQS+G+GF++F + A+
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 97 AIDKLNGM-LINDKQVFVGHFLRKQERETVAIKTKF--NNVFVKNLDESTTDEDLKKIFG 153
+ NG + + +Q F ++ + E +T+ + +FV +L TD L F
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEK-RFQTEGPDHTIFVGDLAPEVTDYMLSDTFK 175
Query: 154 E-YGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
YG++ A V+ D G+SK +GFV F + ++ +A+ +NG+ R +G A K+
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKN 235
Query: 212 ERE-QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
Q Q Q + +++ L ++ D++LK +F +FG + K+ P
Sbjct: 236 ALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---P 292
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMI 300
G K GFV ++ A AL+ +NG +
Sbjct: 293 PG--KRCGFVQYANKASAEHALSVLNGTQL 320
Score = 160 (61.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 47/184 (25%), Positives = 89/184 (48%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
++++ +L + + + +F + G TSA V+R+ G+S+ +GF+ F + A + ++
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
NG E + Q G+ ++ E D +++ +L + D L
Sbjct: 121 YNGAPMPSTEQTF-----RLNWAQAGAGE-KRFQTEGPDH----TIFVGDLAPEVTDYML 170
Query: 252 KELFSE-FGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
+ F +G++ KV+ D +G SKG GFV F+ E RA+ EMNG+ ++P+ +
Sbjct: 171 SDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGP 230
Query: 310 AQRK 313
A K
Sbjct: 231 AANK 234
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 154 (59.3 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 42/155 (27%), Positives = 72/155 (46%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + ++ K L F FG I + D +G KG F+ + ++SA A L
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
+ +++ G Q + + +FV L + TDED++K+F +GTI
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 123
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F+ +A A+ L+ +
Sbjct: 124 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 158
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 58/208 (27%), Positives = 90/208 (43%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+FV + ++DLK IF ++G I V++D K G K L
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKD-----KYTGL---------HKGCAFLT 54
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD-KFQG-LNLYIKNLGDSIDDEKL 251
+ R+ + KAQ ++ L G + D + +G L++ LG DE +
Sbjct: 55 ---YCARDSAL-KAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDV 110
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVA 308
+++F FGTI C V+R P G SKG FV F T EA A+ ++ + S L V
Sbjct: 111 RKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVK 170
Query: 309 VAQRKEERRAR----LQAQFSQMRPVAM 332
A ++ER R + Q P+A+
Sbjct: 171 FADTEKERGLRRMQQVATQLGMFSPIAL 198
Score = 136 (52.9 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 35/109 (32%), Positives = 57/109 (52%)
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ +++Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D
Sbjct: 358 QQQQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVD 414
Query: 270 -PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 415 RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 131 (51.2 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 192 LNG 194
+NG
Sbjct: 441 MNG 443
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 90 (36.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 29/96 (30%), Positives = 42/96 (43%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL P N+ I++ + D R G +F+ L K + + F FG
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPA--DSESR--GDRKLFVGMLGKQQTDEDVRKMFEPFGT 119
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I C + G SKG FV+F+ AQ AI+ L+
Sbjct: 120 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 155
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 176 (67.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 58/207 (28%), Positives = 95/207 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+F+ + + ++DLK IF ++G I V++D G K F+ + + A KA AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K + + + + E +G+ D+ L++ LG DE ++
Sbjct: 69 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVR 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
+F FG I C V+R P G SKG FV F T EA A+ ++G + S L V
Sbjct: 113 RMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKF 172
Query: 310 AQRKEERRAR-LQA---QFSQMRPVAM 332
A ++ER R +Q Q P+A+
Sbjct: 173 ADTEKERGLRRMQQVANQLGMFSPIAL 199
Score = 164 (62.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 45/156 (28%), Positives = 76/156 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+FI + +++D K L F FG I + D +G KG F+ + +ESA A L
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + TDED++++F +G I
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDE 123
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F+ +A A+ AL+G +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSR 159
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FGN++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 438 MNGFQIGMKRLKV 450
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 192 LNG 194
+NG
Sbjct: 438 MNG 440
Score = 125 (49.1 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G N++I +L D ++ ++F FG + S KV D + SK GFV+F P A A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 435 IQAMNGFQIGMKRLKVQLKRPKDANR 460
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 132 (51.5 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 182 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 241
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELK 218
NG+ DR +V K KS ++ +
Sbjct: 242 FNGQFLFDRPMHV-KMDDKSVPHEDYR 267
Score = 126 (49.4 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 181 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 240
Query: 294 EMNGKMIVSKPLYV 307
NG+ + +P++V
Sbjct: 241 MFNGQFLFDRPMHV 254
Score = 118 (46.6 bits), Expect = 0.00084, P = 0.00083
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 36 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 409 RIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 467
Query: 95 QNAIDKLNGMLINDKQVFV 113
+ A +NG+ I+ +++ V
Sbjct: 468 EKACRIMNGIKISGREIDV 486
Score = 117 (46.2 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 34/103 (33%), Positives = 47/103 (45%)
Query: 13 VLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
++N P LNN +I + R T IF+ NLD + K L + FS G +
Sbjct: 154 LMNLPPSILNNPNIPPEVISNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRA 211
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
I D G+S+G G V FE A AI NG + D+ + V
Sbjct: 212 DIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 254
Score = 116 (45.9 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L G +++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 398 LSGPMGSGIRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 455
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
G V F +PE A +A MNG I + + V
Sbjct: 456 CGTVRFDSPESAEKACRIMNGIKISGREIDV 486
Score = 115 (45.5 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
I +K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A
Sbjct: 410 IGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAE 468
Query: 187 KAVEALNGKKFDDRE 201
KA +NG K RE
Sbjct: 469 KACRIMNGIKISGRE 483
Score = 95 (38.5 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 89 ENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNVFVKNLDESTTDE 146
EN ES + +L +K+ H K + K N VF+ N+ +
Sbjct: 4 ENDESVKEDKSELKEKSSGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQ 63
Query: 147 DLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198
+K + E G +T + +D +GKS+ G V F++ + KA+E +N K+D
Sbjct: 64 AIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN--KYD 114
Score = 85 (35.0 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 20 NNKSIRIMYSHRDPSIRKSGTGN--------IFIKNLDKSIDHKALHDTF-SSFGNILSC 70
N K+ R +D + SGTG +FI N+ + +A+ D G +
Sbjct: 23 NKKANRFHPYSKD---KNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYV 79
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
++ D G+S+G G V+F+++E + A++ +N
Sbjct: 80 ELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 111
Score = 38 (18.4 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMP 477
G G M V MG G+ R +S + P
Sbjct: 354 GMGGMNSVTGGMGMGLDRMSSSFDRMGP 381
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 239 (89.2 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++F+ +L K + ++ L TF+ FG + K+ D Q SKG+GFV F NK++A+NAI
Sbjct: 226 HVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAG 285
Query: 101 LNGMLINDKQVFVGHFLRK---QERETVAIKTKFNN-------VFVKNLDESTTDEDLKK 150
+NG I + V RK + R+ + + FN+ V+V N+ + TTD DL+
Sbjct: 286 MNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRD 345
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
+F YG I + K++ + FV +E + A KA+ +NGK+
Sbjct: 346 LFSTYGDIAEVRIF-----KTQRYAFVRYEKKECATKAIMEMNGKE 386
Score = 230 (86.0 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 60/198 (30%), Positives = 99/198 (50%)
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N +++ + V H + E +K +VFV +L + ++E LK F ++G ++ A
Sbjct: 197 NAIVLQESAVL--HSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEA 254
Query: 162 VVMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+RD KSK +GFV+F N +A A+ +NGK R A +K+ E K
Sbjct: 255 KVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLT 314
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
FEQ T K ++Y+ N+ D L++LFS +G I ++ + ++ FV
Sbjct: 315 FEQVFNST--KADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK-----TQRYAFV 367
Query: 281 AFSTPEEASRALAEMNGK 298
+ E A++A+ EMNGK
Sbjct: 368 RYEKKECATKAIMEMNGK 385
Score = 154 (59.3 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 280
E M+ +D + ++++ +L + +E LK F++FG ++ KV+RD + SKG GFV
Sbjct: 212 EPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFV 271
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
+F + A A+A MNGK I + + A RK R + F Q+
Sbjct: 272 SFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQV 318
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 224 (83.9 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 59/198 (29%), Positives = 103/198 (52%)
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+ +E + +K K +FV NL S + D+ ++FG+ GT+ + ++R DGK++ F FV
Sbjct: 84 KTEETQNSNLKRK---LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFV 140
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLN 236
+ ++A A++ + + R V A++ K + A +T K
Sbjct: 141 TMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHK----- 195
Query: 237 LYIKNLGDSIDDEKLKELFS--EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 294
LY+ NL L+ELF+ +F +++ V DP G S G GFV+F+T EEA A+ +
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 295 MNGKMIVSKPLYVAVAQR 312
+NGK I+ +P+ + + R
Sbjct: 256 LNGKEIMGRPITLKFSLR 273
Score = 171 (65.3 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F+ NL S+ + + F G + + +I G+++GF FV + E AQ AIDK +
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFD 156
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKF---------NNVFVKNLDESTTDEDLKKIF- 152
++ + + V F R+ ++ T + ++V NL L+++F
Sbjct: 157 TFQVSGRIISVS-FARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFT 215
Query: 153 -GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
++ +++ VV D +G+S +GFV+F ++A A+ LNGK+ R + K +S
Sbjct: 216 AADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITL-KFSLRS 274
Query: 212 EREQE 216
E E
Sbjct: 275 ASESE 279
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 179 (68.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 59/207 (28%), Positives = 94/207 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK IF ++G I V++D G K F+ + D A KA AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K + + + + E +G+ D+ L++ LG DE ++
Sbjct: 69 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVR 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
++F FGTI C V+R P G SKG FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 310 AQRKEERRAR----LQAQFSQMRPVAM 332
A ++ER R + Q P+A+
Sbjct: 173 ADTEKERGLRRMQQVATQLGMFSPIAL 199
Score = 150 (57.9 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + ++ K L F FG I + D +G KG F+ + ++SA A L
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + TDED++K+F +GTI
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F+ +A A+ L+ +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 135 (52.6 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-P 270
+++Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D
Sbjct: 310 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 366
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 367 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 413
Score = 131 (51.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390
Query: 192 LNG 194
+NG
Sbjct: 391 MNG 393
Score = 131 (51.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 391 MNGFQIGMKRLKV 403
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 176 (67.0 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 55/217 (25%), Positives = 102/217 (47%)
Query: 129 TKFNNVFVKNLDESTTDEDLK---KIFGEYGTITSAVVMRDGDGKSK--C-FGFVNFENA 182
T+F V++KNL+ TT+E L K +Y + A + + C FGF+ F +
Sbjct: 677 TQF--VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSK 734
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE--QAMKETVDKFQGL----- 235
A + ++ LNG D E + + K QE+ + E + K+++ G
Sbjct: 735 QGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNGGQPNKPS 794
Query: 236 -NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 294
+ IKNL +++++LF+ +G I S ++ + P+G +G GFV F T EEA A+
Sbjct: 795 SKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEA 854
Query: 295 MNGKMIVSKPLYVAVAQRK---EERRARLQAQFSQMR 328
+ + L + A++ +E R + + +++
Sbjct: 855 LGNSHFYGRHLVLQYAEQDKNIDELREKANLDYEKIK 891
Score = 138 (53.6 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 52/182 (28%), Positives = 86/182 (47%)
Query: 137 KNLDESTTDED-LKKIFGEYGTI---TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
K D S +D D L K I ++V RD + +S+ N EN D K +
Sbjct: 254 KKHDSSVSDLDWLSKFRSNNDEIIEKNQSIVYRDEE-ESEEEDVNNKENKKDKMKIDDNK 312
Query: 193 NGKKFDDREWYVGKAQKKSER---EQELKG--QFEQAM-KETVDKFQGLNLYIKNLGDSI 246
KK ++ K ++ E ++K FE KE D + ++++NL S
Sbjct: 313 ENKKEKKKDKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKEDEDVGESGRIFVRNLSYST 372
Query: 247 DDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+E L+++FS+FG I+ + D S SKG F+ + PE A +AL +M+GK+ + +
Sbjct: 373 KEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKVFQGRLI 432
Query: 306 YV 307
+V
Sbjct: 433 HV 434
Score = 122 (48.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+ VK L + TD+ K+ F ++GT+T A +++ DGKS+ FGF+ F + + +AK +LN
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGF-STEQSAKNALSLN 63
Query: 194 GKKFDDREWYVGKAQKKSE 212
G D + V A SE
Sbjct: 64 GTFIDTSKIVVETATVASE 82
Score = 121 (47.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 192
+FV+NL ST +EDL+K+F ++G I+ + D D K SK F+ + ++A +A+ +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 193 NGKKFDDREWYV--GKA 207
+GK F R +V GKA
Sbjct: 423 DGKVFQGRLIHVLPGKA 439
Score = 117 (46.2 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 34/109 (31%), Positives = 56/109 (51%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I +K L K + K + F FG + KI G+S+ FGF+ F ++SA+NA+ LN
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGFSTEQSAKNALS-LN 63
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
G I+ ++ V E TVA +T N + K S++++ L ++
Sbjct: 64 GTFIDTSKIVV-------ETATVASETTENRPWSKYSIGSSSNKRLTEM 105
Score = 109 (43.4 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 28 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFV 86
Y+ D + +SG IF++NL S + L FS FG I I D S +SKG F+
Sbjct: 350 YTKEDEDVGESG--RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFI 407
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFV 113
+ E+A A++ ++G + + + V
Sbjct: 408 LYLIPENAVQALNDMDGKVFQGRLIHV 434
Score = 62 (26.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
L +KN+ + +L ELFS+FG ++ +V+ P+ + + + P EA +
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELS--RVVLSPA---RTIALIEYIHPNEAKVGFKNLA 609
Query: 297 GKMIVSKPLYV 307
PLY+
Sbjct: 610 YSKFHHVPLYL 620
Score = 51 (23.0 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 36 RKSGTGNIFIKNLD-KSIDHKALHDTFSSFGNI 67
++S T + +KN+ K+ +H+ LH+ FS FG +
Sbjct: 549 KRSNTV-LLVKNIPFKTQEHE-LHELFSKFGEL 579
Score = 39 (18.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN-KESAQNAIDKLNGM 104
K+ D S D K + T + + K TD + Q F +++ N K + + + K +
Sbjct: 645 KSSDSSNDKKEVESTTKTAATTTTTKKGTDNNTQ---FVYIKNLNWKTTNETLVGKFKSL 701
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 240 (89.5 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 68/277 (24%), Positives = 136/277 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F+KNL + + + F N L ++ + G SKG +++F+ + A+ A+++
Sbjct: 371 LFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 427
Query: 103 GMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G ++ + + + + K ++E+ + + + V NL + ++E L+++F + TS
Sbjct: 428 GTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATS 484
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKG 219
+ ++ G+ K + FV F A+DA +A+ + N + + R + + ++ +G
Sbjct: 485 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 544
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSG 278
F Q K L+++ L + +E L+E F G+I S +++ D +G SKG G
Sbjct: 545 GFNQQSK---------TLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFG 592
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV FS+PE+A A M I + + A+ K E
Sbjct: 593 FVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 629
Score = 192 (72.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 57/215 (26%), Positives = 104/215 (48%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYS-HRDPSIRKSGTGNIFIKNLD-KSIDHKALHDTFS 62
+ A +AL+ T ++ +++ I Y+ + + G G K L ++ + A +T
Sbjct: 417 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQ 476
Query: 63 S-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
F S K+ + G+ KG+ FV+F E A+ A++ N I + + + +
Sbjct: 477 ELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQ 536
Query: 122 RETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+ + + FN +FV+ L E TT+E L++ F G+I++ +V G SK FGFV
Sbjct: 537 KGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFV 594
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+F + +DA A EA+ + D + + A+ K E
Sbjct: 595 DFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 629
Score = 190 (71.9 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 56/220 (25%), Positives = 105/220 (47%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++F+KNL + D++ L F + +++ G SK FG+V F + E A+ +L
Sbjct: 280 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QL 338
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
NG + ++ + K+ + + +FVKNL T++++K +F +
Sbjct: 339 NGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--ALEVR 396
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+V+ +G SK ++ F+ +A KA+E G + D R + +KS++E + KG
Sbjct: 397 LVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ-KGGG 454
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 261
E+ K L + NL + +E L+ELF + +I
Sbjct: 455 ERESK---------TLIVNNLSYAASEETLQELFKKATSI 485
Score = 181 (68.8 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 54/202 (26%), Positives = 100/202 (49%)
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+K++ E A + F+ +FVKNL + E+L+ E+ + V G SK FG+V
Sbjct: 266 KKKKTEIKAPASAFS-LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYV 324
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+F +A+D KA++ LNGKK E + KA+ K +++KE + L
Sbjct: 325 DFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSK------------ESLKENKKERDARTL 371
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
++KNL + ++++K +F +++ + G SKG ++ F T EA +AL E G
Sbjct: 372 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 428
Query: 298 KMIVSKPLYVAVAQRKEERRAR 319
+ + + + K ++ ++
Sbjct: 429 TEVDGRAMVIDYTGEKSQQESQ 450
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 240 (89.5 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 68/277 (24%), Positives = 136/277 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F+KNL + + + F N L ++ + G SKG +++F+ + A+ A+++
Sbjct: 373 LFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 429
Query: 103 GMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G ++ + + + + K ++E+ + + + V NL + ++E L+++F + TS
Sbjct: 430 GTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATS 486
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKG 219
+ ++ G+ K + FV F A+DA +A+ + N + + R + + ++ +G
Sbjct: 487 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 546
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSG 278
F Q K L+++ L + +E L+E F G+I S +++ D +G SKG G
Sbjct: 547 GFNQQSK---------TLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFG 594
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV FS+PE+A A M I + + A+ K E
Sbjct: 595 FVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Score = 192 (72.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 57/215 (26%), Positives = 104/215 (48%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYS-HRDPSIRKSGTGNIFIKNLD-KSIDHKALHDTFS 62
+ A +AL+ T ++ +++ I Y+ + + G G K L ++ + A +T
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQ 478
Query: 63 S-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
F S K+ + G+ KG+ FV+F E A+ A++ N I + + + +
Sbjct: 479 ELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQ 538
Query: 122 RETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+ + + FN +FV+ L E TT+E L++ F G+I++ +V G SK FGFV
Sbjct: 539 KGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFV 596
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+F + +DA A EA+ + D + + A+ K E
Sbjct: 597 DFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Score = 190 (71.9 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 56/220 (25%), Positives = 105/220 (47%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++F+KNL + D++ L F + +++ G SK FG+V F + E A+ +L
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QL 340
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
NG + ++ + K+ + + +FVKNL T++++K +F +
Sbjct: 341 NGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--ALEVR 398
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+V+ +G SK ++ F+ +A KA+E G + D R + +KS++E + KG
Sbjct: 399 LVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ-KGGG 456
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 261
E+ K L + NL + +E L+ELF + +I
Sbjct: 457 ERESK---------TLIVNNLSYAASEETLQELFKKATSI 487
Score = 180 (68.4 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 55/202 (27%), Positives = 101/202 (50%)
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+K++ ET A + F+ +FVKNL + E+L+ E+ + V G SK FG+V
Sbjct: 270 KKKKTETPA--SAFS-LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYV 326
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+F +A+D KA++ LNGKK E + KA+ K +++KE + L
Sbjct: 327 DFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSK------------ESLKENKKERDARTL 373
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
++KNL + ++++K +F +++ + G SKG ++ F T EA +AL E G
Sbjct: 374 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 430
Query: 298 KMIVSKPLYVAVAQRKEERRAR 319
+ + + + K ++ ++
Sbjct: 431 TEVDGRAMVIDYTGEKSQQESQ 452
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 240 (89.5 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 68/277 (24%), Positives = 136/277 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F+KNL + + + F N L ++ + G SKG +++F+ + A+ A+++
Sbjct: 373 LFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 429
Query: 103 GMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G ++ + + + + K ++E+ + + + V NL + ++E L+++F + TS
Sbjct: 430 GTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATS 486
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKG 219
+ ++ G+ K + FV F A+DA +A+ + N + + R + + ++ +G
Sbjct: 487 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 546
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSG 278
F Q K L+++ L + +E L+E F G+I S +++ D +G SKG G
Sbjct: 547 GFNQQSK---------TLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFG 594
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV FS+PE+A A M I + + A+ K E
Sbjct: 595 FVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Score = 192 (72.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 57/215 (26%), Positives = 104/215 (48%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYS-HRDPSIRKSGTGNIFIKNLD-KSIDHKALHDTFS 62
+ A +AL+ T ++ +++ I Y+ + + G G K L ++ + A +T
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQ 478
Query: 63 S-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
F S K+ + G+ KG+ FV+F E A+ A++ N I + + + +
Sbjct: 479 ELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQ 538
Query: 122 RETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+ + + FN +FV+ L E TT+E L++ F G+I++ +V G SK FGFV
Sbjct: 539 KGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFV 596
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+F + +DA A EA+ + D + + A+ K E
Sbjct: 597 DFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Score = 190 (71.9 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 56/220 (25%), Positives = 105/220 (47%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++F+KNL + D++ L F + +++ G SK FG+V F + E A+ +L
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QL 340
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
NG + ++ + K+ + + +FVKNL T++++K +F +
Sbjct: 341 NGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--ALEVR 398
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+V+ +G SK ++ F+ +A KA+E G + D R + +KS++E + KG
Sbjct: 399 LVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ-KGGG 456
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 261
E+ K L + NL + +E L+ELF + +I
Sbjct: 457 ERESK---------TLIVNNLSYAASEETLQELFKKATSI 487
Score = 180 (68.4 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 55/202 (27%), Positives = 101/202 (50%)
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+K++ ET A + F+ +FVKNL + E+L+ E+ + V G SK FG+V
Sbjct: 270 KKKKTETPA--SAFS-LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYV 326
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+F +A+D KA++ LNGKK E + KA+ K +++KE + L
Sbjct: 327 DFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSK------------ESLKENKKERDARTL 373
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
++KNL + ++++K +F +++ + G SKG ++ F T EA +AL E G
Sbjct: 374 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 430
Query: 298 KMIVSKPLYVAVAQRKEERRAR 319
+ + + + K ++ ++
Sbjct: 431 TEVDGRAMVIDYTGEKSQQESQ 452
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 168 (64.2 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 51/191 (26%), Positives = 90/191 (47%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADD---AAKAV 189
+FV L S + L+++F + G + V+ + K+ + FG+V F +D A K +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 190 EALNGKKFD---DREWYVGKAQ--KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
G K + ++ K++ +K+E + K + + + DK L I+NL
Sbjct: 66 TTFEGCKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADK--KARLIIRNLSF 123
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
++ LK +F+ +GT+ + R P G +G F+ F EA +AL N K I +
Sbjct: 124 KCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGRT 183
Query: 305 LYV--AVAQRK 313
+ V AVA+ K
Sbjct: 184 VAVDWAVAKDK 194
Score = 149 (57.5 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
K ++ VA K + ++NL +++DLK +F YGT+ + R DGK + F F+
Sbjct: 103 KHKKAKVADKKA--RLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQ 160
Query: 179 FENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKG---QFEQAMKETVDK 231
F+N +A KA++ N K+ R +W V K + K + + G E+ KE+ K
Sbjct: 161 FKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKKSSERKPKESSKK 220
Query: 232 FQGLNLYIKNLGDSIDDE 249
+ +++ D DD+
Sbjct: 221 SCRVEEQVEDDDDDEDDD 238
Score = 99 (39.9 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 288
D +G ++I+NL ++E L E+ +FG + +++ P + SKG F F T E A
Sbjct: 320 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAA 379
Query: 289 SRALA------EMNGKMIVSKPLYVAVAQRKEERRARLQAQ 323
+ LA E G + + L V +A ++E A+LQ +
Sbjct: 380 QKCLAAASPETEGGGLKLDGRQLKVDLAVTRDEA-AKLQTK 419
Score = 92 (37.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 20 NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ 79
N++S + H+ + + I+NL L F+ +G +L I G+
Sbjct: 94 NSESPKKEPKHKKAKVADK-KARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGK 152
Query: 80 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
+GF F+QF+N A A+ N I + V V + K +
Sbjct: 153 MRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDK 194
Score = 88 (36.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 39/127 (30%), Positives = 55/127 (43%)
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF-----SEFGT-ITS 263
K ER + LK Q + + + Q L + NL S+DD++L++L E G I
Sbjct: 455 KRERFELLKHQ--KLKNQNIFVSQ-TRLCLHNLPKSVDDKQLRKLLLQATGGEKGVRIKE 511
Query: 264 CKVMRD-------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
C+VMRD G S G FV F E A RAL N P + + E
Sbjct: 512 CRVMRDLKAVHGKMKGQSLGYAFVEFQKHEHALRALRHFNNNPETFGPQKRPIVEFSLED 571
Query: 317 RARLQAQ 323
R +L+ +
Sbjct: 572 RRKLKVK 578
Score = 87 (35.7 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+F+ L S L + FS G + C + T+ GS +GFG+V F E Q A+ ++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Score = 82 (33.9 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 33/133 (24%), Positives = 60/133 (45%)
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGF 176
+K++R+ + T+ VF++NL + +E L ++ ++G + +V+ SK F
Sbjct: 311 KKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAF 370
Query: 177 VNFENADDAAKAVEALN------GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 230
F + A K + A + G K D R+ V A R++ K Q ++ K T
Sbjct: 371 AQFVTQEAAQKCLAAASPETEGGGLKLDGRQLKVDLAVT---RDEAAKLQTKKVKKPTGT 427
Query: 231 KFQGLNLYIKNLG 243
+ NLY+ G
Sbjct: 428 R----NLYLAREG 436
Score = 42 (19.8 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 321
R+L +M K + SKP Q K++++ Q
Sbjct: 584 RSLQKMGSKPVTSKPQKEQKEQGKDKQQKAAQ 615
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 216 (81.1 bits), Expect = 6.6e-17, P = 6.6e-17
Identities = 48/156 (30%), Positives = 90/156 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
S +++ G S+ GF+ F+ +A +A++ LNG+
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 154 (59.3 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 103
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 135 (52.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 LNGKKFDDREWYVGKAQKKS 211
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 120 (47.3 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 295 MNGK 298
+NG+
Sbjct: 186 LNGQ 189
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 235 (87.8 bits), Expect = 7.1e-17, P = 7.1e-17
Identities = 78/290 (26%), Positives = 139/290 (47%)
Query: 30 HRDPSIRKSGTGNIFIKNL---DKS--IDHKALHDTFSSFGNILSCKIATDGSG-QSKGF 83
H+ + G+G +K L D +D LH FS + S K+ + QS+G+
Sbjct: 103 HQSQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGY 162
Query: 84 GFVQFENKESAQNAIDKLNGMLI-NDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNLDE 141
GFV+F ++ +A+ A+ +G+ + N +Q F ++ E A + + ++FV +L
Sbjct: 163 GFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAP 222
Query: 142 STTDEDLKKIF-GEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDD 199
+D L + F G Y ++ A V+ D + G+SK +GFV F + ++ ++A+ +NG
Sbjct: 223 DVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSS 282
Query: 200 REWYVGKA---------QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
R+ VG A Q+ + L G + + +++ L + +E
Sbjct: 283 RQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEED 342
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
L + FS+FG + S K+ P G KG GFV F+ + A A+ +NG +I
Sbjct: 343 LMQPFSDFGEVVSVKI---PVG--KGCGFVQFANRQSAEEAIGNLNGTVI 387
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 48/174 (27%), Positives = 81/174 (46%)
Query: 145 DED-LKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREW 202
DE L F ++S V+R+ +S+ +GFV F + A +A+++ +G +
Sbjct: 131 DETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPN--- 187
Query: 203 YVGKAQKKSEREQELK-GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS-EFGT 260
+E+ L F K + L++++ +L + D L E F+ + +
Sbjct: 188 --------AEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 261 ITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
+ KV+ D + G SKG GFV F E SRA+ EMNG S+ + V +A K
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 96
+S IF+ LD + + L FS FG ++S KI KG GFVQF N++SA+
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV-----GKGCGFVQFANRQSAEE 377
Query: 97 AIDKLNGMLINDKQV 111
AI LNG +I V
Sbjct: 378 AIGNLNGTVIGKNTV 392
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 179 (68.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 59/207 (28%), Positives = 94/207 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK IF ++G I V++D G K F+ + D A KA AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K + + + + E +G+ D+ L++ LG DE ++
Sbjct: 69 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVR 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
++F FGTI C V+R P G SKG FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 310 AQRKEERRAR----LQAQFSQMRPVAM 332
A ++ER R + Q P+A+
Sbjct: 173 ADTEKERGLRRMQQVATQLGMFSPIAL 199
Score = 150 (57.9 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + ++ K L F FG I + D +G KG F+ + ++SA A L
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + TDED++K+F +GTI
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F+ +A A+ L+ +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 136 (52.9 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 38/143 (26%), Positives = 65/143 (45%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
+ ++ A A +L F V + ++Q+ + Q +Q ++ + G
Sbjct: 350 YAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQQQRPDGC 409
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
N++I +L D ++ ++F FG + S KV D + SK GFV+F P A A+
Sbjct: 410 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 469
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
MNG I K L V + + K+ R
Sbjct: 470 MNGFQIGMKRLKVQLKRPKDANR 492
Score = 131 (51.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 410 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 469
Query: 192 LNG 194
+NG
Sbjct: 470 MNG 472
Score = 131 (51.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 410 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 469
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 470 MNGFQIGMKRLKV 482
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 59/207 (28%), Positives = 94/207 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK IF ++G I V++D G K F+ + D A KA AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K + + + + E +G+ D+ L++ LG DE ++
Sbjct: 69 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVR 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
++F FGTI C V+R P G SKG FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 310 AQRKEERRAR----LQAQFSQMRPVAM 332
A ++ER R + Q P+A+
Sbjct: 173 ADTEKERGLRRMQQVATQLGMFSPIAL 199
Score = 150 (57.9 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + ++ K L F FG I + D +G KG F+ + ++SA A L
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + TDED++K+F +GTI
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F+ +A A+ L+ +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 135 (52.6 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-P 270
+++Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D
Sbjct: 360 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 192 LNG 194
+NG
Sbjct: 441 MNG 443
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 441 MNGFQIGMKRLKV 453
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 232 (86.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 72/289 (24%), Positives = 137/289 (47%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
+++I +L +D L + F G + K+ + +G S+G+GF++F N +A+ +
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 101 LNGM-LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF-GEYGTI 158
NG + + +Q F ++ + E + + VFV +L TD L + F Y ++
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSV 200
Query: 159 TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA-QKKSEREQE 216
A V+ D G+SK +GFV F + + +A+ +NG+ R G A KK Q
Sbjct: 201 KGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
Q Q D +++ + S+ ++ LK +F +FG + K+ P+G K
Sbjct: 261 ASYQNTQGNSGESDP-TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---PAG--KR 314
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL-QAQF 324
GFV ++ A +AL+ +NG + + + ++ + ++ + QAQ+
Sbjct: 315 CGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQY 363
Score = 169 (64.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 49/195 (25%), Positives = 98/195 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDK 100
+F+ +L + L +TF + + ++ K+ D + G+SKG+GFV+F ++ A+ +
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 101 LNGMLINDKQVFVGHFLRKQE--RETVAIK-TKFNN---------VFVKNLDESTTDEDL 148
+NG + + + G K+ + + + T+ N+ +FV +D+S T++DL
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYV 204
K +FG++G + + GK +C GFV + N A +A+ LNG + + W
Sbjct: 295 KSVFGQFGELVHVKIPA---GK-RC-GFVQYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
Query: 205 GKAQKKSEREQELKG 219
+ K+++ +Q G
Sbjct: 350 SPSNKQTQPDQAQYG 364
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 59/207 (28%), Positives = 94/207 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK IF ++G I V++D G K F+ + D A KA AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K + + + + E +G+ D+ L++ LG DE ++
Sbjct: 69 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVR 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
++F FGTI C V+R P G SKG FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 310 AQRKEERRAR----LQAQFSQMRPVAM 332
A ++ER R + Q P+A+
Sbjct: 173 ADTEKERGLRRMQQVATQLGMFSPIAL 199
Score = 150 (57.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + ++ K L F FG I + D +G KG F+ + ++SA A L
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + TDED++K+F +GTI
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F+ +A A+ L+ +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 132 (51.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSG 272
+Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D +
Sbjct: 358 QQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATN 414
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 415 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 459
Score = 131 (51.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436
Query: 192 LNG 194
+NG
Sbjct: 437 MNG 439
Score = 131 (51.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 437 MNGFQIGMKRLKV 449
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 154 (59.3 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 42/155 (27%), Positives = 76/155 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+FI + ++++ K L F FG I + D +G KG F+ + +ESA A + L
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
+ +++ G Q + + +FV L + +D D++K+F +G+I
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEEC 123
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV +++ +A A+ AL+G +
Sbjct: 124 TVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSR 158
Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 55/200 (27%), Positives = 92/200 (46%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+F+ + + ++DLK IF ++G I V++D K G K L
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKD-----KYTGM---------HKGCAFLT 54
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD-KFQG-LNLYIKNLGDSIDDEKL 251
+ RE + KAQ ++ L G + D + +G L++ LG + D +
Sbjct: 55 ---YCARESAL-KAQNALHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADV 110
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVA 308
+++F FG+I C V+R P G SKG FV + + EA A++ ++G + S L V
Sbjct: 111 RKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVK 170
Query: 309 VAQRKEERRAR-LQAQFSQM 327
A ++ER R +Q SQ+
Sbjct: 171 FADTEKERGIRRMQQVASQL 190
Score = 136 (52.9 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FGN++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 428 MNGFQIGMKRLKV 440
Score = 132 (51.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 192 LNG 194
+NG
Sbjct: 428 MNG 430
Score = 126 (49.4 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G N++I +L D ++ ++F FG + S KV D + SK GFV+F P A A
Sbjct: 365 EGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 424
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 425 IQAMNGFQIGMKRLKVQLKRPKDANR 450
Score = 99 (39.9 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 98
G +F+ L K + + F FG+I C + G SKG FV++++ AQ AI
Sbjct: 92 GDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAI 151
Query: 99 DKLNG 103
L+G
Sbjct: 152 SALHG 156
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 228 (85.3 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 77/285 (27%), Positives = 131/285 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-------GFG----------- 84
+++ NL + + + F+ G SCK+ T+ S S+ GF
Sbjct: 10 LYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTSNDPYC 69
Query: 85 FVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDES 142
FV+F A A+ +NG I K+V V Q+++T F+ VFV +L
Sbjct: 70 FVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPE 125
Query: 143 TTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
T +D++ F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 126 ITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 185
Query: 202 ----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
W K KS ++ K +F++ + ++ Q +Y + + + +++ F
Sbjct: 186 IRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSP--QNCTVYCGGIQSGLTEHLMRQTF 243
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
S FG I +V + KG F+ FS+ E A+ A+ +NG I
Sbjct: 244 SPFGQIMEIRVFPE-----KGYSFIRFSSHESAAHAIVSVNGTTI 283
Score = 175 (66.7 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 60/241 (24%), Positives = 111/241 (46%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
AA AL +N + K +++ ++ PS +K T N +F+ +L I + F+
Sbjct: 79 AAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAP 137
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE- 121
FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK
Sbjct: 138 FGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 197
Query: 122 ----RETVAIKTKFNNV-----------FVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
++ A + +F+ V + + T+ +++ F +G I V +
Sbjct: 198 PKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPE 257
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK-AQKKSEREQELK-GQFE 222
K + F+ F + + AA A+ ++NG + + Y GK + ++ Q ++ GQ+
Sbjct: 258 -----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMAKNVQPMEYGQWG 312
Query: 223 Q 223
Q
Sbjct: 313 Q 313
Score = 137 (53.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 41/139 (29%), Positives = 70/139 (50%)
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 70 FVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 115
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
++++ +L I + ++ F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 116 HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVH 175
Query: 295 MNGKMIVSKPLYVAVAQRK 313
M G+ + + + A RK
Sbjct: 176 MGGQWLGGRQIRTNWATRK 194
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 183 (69.5 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 47/164 (28%), Positives = 86/164 (52%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 189
+F+KNL+ TT+E LK++F + GT+ S + + G S FGFV + + A KA+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ L G D + V +++ ++ L + + K+T K + ++N+
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK-----ILVRNIPFQAHSR 846
Query: 250 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 291
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 847 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 166 (63.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 45/163 (27%), Positives = 79/163 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAI 98
+FIKNL+ + L + FS G + SC I+ G S GFGFV++ E AQ A+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 99 DKLNGMLINDK--QVFVGHFLRKQ-----ERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+L G +++ +V + K ++ V K + + V+N+ +++++
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 152 FGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEAL 192
F +G + + + + G G + FGFV+F DA +A AL
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 163 (62.4 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSGI--SKGS 277
E+ +E + G L+IKNL +EKLKE+FS+ GT+ SC + + + +G+ S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGF 776
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
GFV + PE+A +AL ++ G ++ L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 811
Score = 131 (51.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 43/195 (22%), Positives = 94/195 (48%)
Query: 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 188
T + V ++ + T++++ + + +V R+ G + FV+F N ++ +A
Sbjct: 291 TTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIV-RNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 189 V----EALNGKK---FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ E + G+ F ++ K K+ + +G+ +E D + L+++N
Sbjct: 350 LKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKS-WQGRILGENEEEEDLAESGRLFVRN 408
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI 300
L + +E L++LFS++G ++ D + KG F+ F PE A +A +E++G++
Sbjct: 409 LPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVF 468
Query: 301 VSKPLYVAVAQRKEE 315
+ L+V + K+E
Sbjct: 469 QGRMLHVLPSTIKKE 483
Score = 125 (49.1 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 46/176 (26%), Positives = 77/176 (43%)
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQ-FENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F F N K A + + G +++ F K + G N + + G L +
Sbjct: 337 FVDFSNEEEVKQALKCNREYMGGRYIEVFREKN-----VPTTKGAPKNTTKSWQGRILGE 391
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 178
E E ++ +FV+NL ++T+EDL+K+F +YG ++ D K K F F+
Sbjct: 392 NEEEEDLAES--GRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE---LKGQFEQAMKETVDK 231
F + A KA ++G+ F R +V + K E ++ L + KE DK
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDK 505
Score = 112 (44.5 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ + VKNL +E +++F +GT+T + DGK + FGF+ F++ ++A KA +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 192 LNGKKFDD 199
N K F D
Sbjct: 62 FN-KSFID 68
Score = 103 (41.3 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+ +KNL + + F++FG + C + G+ + FGF+ F+++E AQ A N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 103 GMLINDKQVFV 113
I+ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 60 (26.2 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+ VKNL T L++ FG +G++ V++ +G G + V F +A KA L
Sbjct: 589 ILVKNLPAGTLAAQLQETFGHFGSL-GRVLLPEG-GIT---AIVEFLEPLEARKAFRHLA 643
Query: 194 GKKFDD----REWY-VGKAQKKSEREQELKGQFEQAMKE 227
KF EW VG + ++++L+ + M++
Sbjct: 644 YSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEK 682
Score = 57 (25.1 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 68 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV-A 126
++ +I + G G+ FV F N+E + A+ K N + + + V F K T A
Sbjct: 320 VAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL-KCNREYMGGRYIEV--FREKNVPTTKGA 376
Query: 127 IKTKFNNVFVKNLDESTTDEDL 148
K + + L E+ +EDL
Sbjct: 377 PKNTTKSWQGRILGENEEEEDL 398
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 150 (57.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 42/136 (30%), Positives = 63/136 (46%)
Query: 206 KAQKKSEREQELKGQFEQAMKETVD-KFQG-LNLYIKNLGDSIDDEKLKELFSEFGTITS 263
KAQ ++ L G + D + +G L++ LG DE ++++F FGTI
Sbjct: 65 KAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 124
Query: 264 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAVAQRKEERRAR- 319
C V+R P G SKG FV F T EA A+ ++ + S L V A ++ER R
Sbjct: 125 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRR 184
Query: 320 ---LQAQFSQMRPVAM 332
+ Q P+A+
Sbjct: 185 MQQVATQLGMFSPIAL 200
Score = 145 (56.1 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 41/150 (27%), Positives = 69/150 (46%)
Query: 48 LDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLI 106
+ + ++ K L F FG I + D +G KG F+ + ++SA A L+
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALH---- 71
Query: 107 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
+++ G Q + + +FV L + TDED++K+F +GTI V+R
Sbjct: 72 -EQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG 130
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKK 196
DG SK FV F+ +A A+ L+ +
Sbjct: 131 PDGTSKGCAFVKFQTHAEAQAAINTLHSSR 160
Score = 135 (52.6 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-P 270
+++Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D
Sbjct: 361 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 417
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 418 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 464
Score = 131 (51.2 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 382 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 441
Query: 192 LNG 194
+NG
Sbjct: 442 MNG 444
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 382 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 441
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 442 MNGFQIGMKRLKV 454
Score = 90 (36.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/96 (30%), Positives = 42/96 (43%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL P N+ I++ + D R G +F+ L K + + F FG
Sbjct: 66 AQSALHEQKTLPGMNRPIQVKPA--DSESR--GDRKLFVGMLGKQQTDEDVRKMFEPFGT 121
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I C + G SKG FV+F+ AQ AI+ L+
Sbjct: 122 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 157
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 211 (79.3 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 52/176 (29%), Positives = 90/176 (51%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNI-LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+F+ NL +D +AL F G + +S I + QS+GFGFV E A+ A++K
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 102 NGMLINDKQVFVGHFL---RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
N +N +++ V + ER+ F ++V NL L+++F E+G +
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR-IYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 159 TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
A V+ D + G+S+ FGFV N ++ A+ AL+G+ + R V A++++ R
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 207 (77.9 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 55/186 (29%), Positives = 93/186 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGT--ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+FV NL + L +F + GT I+ + RD D +S+ FGFV ++A KAVE
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTD-QSRGFGFVTMSTVEEAEKAVEK 173
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
N + + R V +A + R + ++ A + +Y+ NL +D +L
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR----------IYVGNLPWDVDSGRL 223
Query: 252 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ LFSE G + +V+ D +G S+G GFV S E + A+A ++G+ + + + V VA
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Query: 311 QRKEER 316
+ + R
Sbjct: 284 EERTRR 289
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 164 (62.8 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 56/199 (28%), Positives = 89/199 (44%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + + ++DLK +F ++G I V++D G K F+ + D A KA AL
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K G A+ + + + + + K L++ L +E +
Sbjct: 107 HEQKT-----LPGMARPIQVKPADSESRGGRDRK----------LFVGMLNKQQSEEDVL 151
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
LF FG I C V+R P G SKG FV FS+ EA A+ ++G + S L V
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 211
Query: 310 AQRKEERRAR-LQAQFSQM 327
A +ER R +Q Q+
Sbjct: 212 ADTDKERTLRRMQQMVGQL 230
Score = 150 (57.9 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 40/157 (25%), Positives = 78/157 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + +++D K L F FG I + D +G KG F+ + ++SA A L
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 102 NGMLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+ +++ G ++ + ++ + + +FV L++ ++ED+ ++F +G I
Sbjct: 107 H-----EQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVID 161
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F + +A A+ AL+G +
Sbjct: 162 ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 198
Score = 137 (53.3 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L F FGNI+S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQA 460
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 461 MNGFQIGMKRLKV 473
Score = 128 (50.1 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L ++F FG I S KV D + SK GFV+F P A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTA 457
Query: 292 LAEMNGKMIVSKPLYVAVAQRKE 314
+ MNG I K L V + + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
Score = 125 (49.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L ++F +G I S+ V D +SKCFGFV+F+N A A++A
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQA 460
Query: 192 LNG 194
+NG
Sbjct: 461 MNG 463
Score = 88 (36.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK 91
D R +F+ L+K + + F FG I C + G SKG FV+F +
Sbjct: 125 DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH 184
Query: 92 ESAQNAIDKLNG 103
AQ AI L+G
Sbjct: 185 TEAQAAIHALHG 196
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 155 (59.6 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 50/196 (25%), Positives = 88/196 (44%)
Query: 26 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFG 84
+ Y ++P +F+ + KS+D L + F +G + S + D +G SKG
Sbjct: 345 VTYGEKEPD---PDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 401
Query: 85 FVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTT 144
FV F + +A A D L+ + + G + Q + + +FV L++
Sbjct: 402 FVTFYTRHAALKAQDALHNV-----KTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLN 456
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA-LNGKKFDD---R 200
+ D++K+F +G I V+RD +G+SK FV F A A++ L+ K +
Sbjct: 457 ENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTS 516
Query: 201 EWYVGKAQKKSEREQE 216
V A + E+EQ+
Sbjct: 517 PLVVKFADTQKEKEQK 532
Score = 135 (52.6 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD DL F +G + SA V D SKCFGFV+F+N D A A++A
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 192 LNG 194
+NG
Sbjct: 787 MNG 789
Score = 133 (51.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L TF FGN++S K+ D + SK FGFV F+N +SAQ AI
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 101 LNGMLINDKQVFV 113
+NG + K++ V
Sbjct: 787 MNGFQVGTKRLKV 799
Score = 131 (51.2 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 52/196 (26%), Positives = 89/196 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+FV + +S + L+++F EYG + S V+RD K G +K +
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRD-----KATGI---------SKGCCFVT 404
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSIDDEK 250
F R + KAQ + L G + + D + N L++ L +++
Sbjct: 405 ---FYTRHAAL-KAQDALHNVKTLNGMYHPIQMKPADS-ENRNERKLFVGMLNKKLNEND 459
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL-AEMNGKMIV---SKPLY 306
+++LF G I C V+RD +G SKG FV F+T A A+ ++ I+ + PL
Sbjct: 460 VRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLV 519
Query: 307 VAVAQ-RKEERRARLQ 321
V A +KE+ + ++Q
Sbjct: 520 VKFADTQKEKEQKKIQ 535
Score = 128 (50.1 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D L F FG + S KV D + +SK GFV+F P+ A A
Sbjct: 724 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 783
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEER 316
+ MNG + +K L V + + K+ +
Sbjct: 784 IKAMNGFQVGTKRLKVQLKKPKDSK 808
Score = 101 (40.6 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 30/94 (31%), Positives = 42/94 (44%)
Query: 6 SAARALDVL-NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+A +A D L N LN I D R +F+ L+K ++ + F
Sbjct: 410 AALKAQDALHNVKTLNGMYHPIQMKPADSENRNER--KLFVGMLNKKLNENDVRKLFEVH 467
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 98
G I C + D +GQSKG FV F K +A +AI
Sbjct: 468 GAIEECTVLRDQNGQSKGCAFVTFATKHAAISAI 501
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 225 (84.3 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 76/301 (25%), Positives = 138/301 (45%)
Query: 33 PSIRKSGTGNI---FIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQF 88
PS++ + I +I +L +D L+ F+ G ++S K+ + +GQ +G+GF++F
Sbjct: 51 PSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEF 110
Query: 89 ENKESAQNAIDKLNGMLIND--KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDE 146
+ +A+ + N I Q+F ++ + + +FV +L TD
Sbjct: 111 ASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT-IFVGDLAADVTDY 169
Query: 147 DLKKIF-GEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
L + F Y ++ A V+ D G++K +GFV F + + +A+ +NG R +
Sbjct: 170 ILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
Query: 205 GKA-QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 263
G A KK Q Q A T + +++ L S+ D+ LK +FS++G I
Sbjct: 230 GPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVH 289
Query: 264 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 323
K+ P+G K GFV FS A AL +NG + + ++ + +++ +Q
Sbjct: 290 VKI---PAG--KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQ 344
Query: 324 F 324
F
Sbjct: 345 F 345
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 185 (70.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 50/191 (26%), Positives = 89/191 (46%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFEN 181
E A TK F+ N+ + LK + E G +T ++ D +GKS+ V F+
Sbjct: 61 EPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKM 120
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA E LN R V +++ G+ + + + G +++ N
Sbjct: 121 EESMKKAAEVLNKHSLSGRPLKV---------KEDPDGEHARRAMQKAGRL-GSTVFVAN 170
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L + +KLKE+FS G + ++ D G S+G G V F EA +A++ NG+++
Sbjct: 171 LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 230
Query: 302 SKPLYVAVAQR 312
+P++V + +R
Sbjct: 231 DRPMHVKMDER 241
Score = 180 (68.4 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 53/184 (28%), Positives = 89/184 (48%)
Query: 44 FIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
FI N+ + ++L D G + ++ D G+S+G V+F+ +ES + A + LN
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132
Query: 103 GMLINDKQVFV-----GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
++ + + V G R+ ++ + + VFV NLD + LK++F G
Sbjct: 133 KHSLSGRPLKVKEDPDGEHARRAMQKAGRLGS---TVFVANLDYKVGWKKLKEVFSMAGV 189
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
+ A ++ D DGKS+ G V FE + +A +A+ NG+ DR +V K ER
Sbjct: 190 VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV----KMDERALP- 244
Query: 218 KGQF 221
KG F
Sbjct: 245 KGDF 248
Score = 141 (54.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 3 MLSSAARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGT-GN-IFIKNLDKSIDHKA 56
M S +A +VLN L+ + +++ H +++K+G G+ +F+ NLD + K
Sbjct: 120 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK 179
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
L + FS G ++ I D G+S+G G V FE A AI NG L+ D+ + V
Sbjct: 180 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 236
Score = 120 (47.3 bits), Expect = 0.00081, P = 0.00081
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P + + IF++NL K L D F+ G++L I + +G+SKG G V+FE+ E
Sbjct: 606 PGVARKAC-QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPE 663
Query: 93 SAQNAIDKLNGMLINDKQVFV 113
A+ A +NGM ++ +++ V
Sbjct: 664 VAERACRMMNGMKLSGREIDV 684
Score = 101 (40.6 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ K +FV+NL T + LK F E G + A + + +GKSK G V FE+ + A
Sbjct: 608 VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAE 666
Query: 187 KAVEALNGKKFDDRE 201
+A +NG K RE
Sbjct: 667 RACRMMNGMKLSGRE 681
Score = 99 (39.9 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
++++NL + LK+ F+E G + + + +G SKG G V F +PE A RA MN
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 673
Query: 297 GKMIVSKPLYVAV 309
G + + + V +
Sbjct: 674 GMKLSGREIDVRI 686
Score = 39 (18.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 449 MGAGSMLPVPVDMGAGIPR 467
MG VP MGAG+ R
Sbjct: 485 MGLSMDRMVPTGMGAGLER 503
Score = 37 (18.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 450 GAGSMLPVPVDMGAGIPR 467
GAG +P MG GI R
Sbjct: 353 GAGGSVPGIERMGPGIDR 370
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 185 (70.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 50/191 (26%), Positives = 89/191 (46%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFEN 181
E A TK F+ N+ + LK + E G +T ++ D +GKS+ V F+
Sbjct: 61 EPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKM 120
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA E LN R V +++ G+ + + + G +++ N
Sbjct: 121 EESMKKAAEVLNKHSLSGRPLKV---------KEDPDGEHARRAMQKAGRL-GSTVFVAN 170
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L + +KLKE+FS G + ++ D G S+G G V F EA +A++ NG+++
Sbjct: 171 LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 230
Query: 302 SKPLYVAVAQR 312
+P++V + +R
Sbjct: 231 DRPMHVKMDER 241
Score = 180 (68.4 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 53/184 (28%), Positives = 89/184 (48%)
Query: 44 FIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
FI N+ + ++L D G + ++ D G+S+G V+F+ +ES + A + LN
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132
Query: 103 GMLINDKQVFV-----GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
++ + + V G R+ ++ + + VFV NLD + LK++F G
Sbjct: 133 KHSLSGRPLKVKEDPDGEHARRAMQKAGRLGS---TVFVANLDYKVGWKKLKEVFSMAGV 189
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
+ A ++ D DGKS+ G V FE + +A +A+ NG+ DR +V K ER
Sbjct: 190 VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV----KMDERALP- 244
Query: 218 KGQF 221
KG F
Sbjct: 245 KGDF 248
Score = 141 (54.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 3 MLSSAARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGT-GN-IFIKNLDKSIDHKA 56
M S +A +VLN L+ + +++ H +++K+G G+ +F+ NLD + K
Sbjct: 120 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK 179
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
L + FS G ++ I D G+S+G G V FE A AI NG L+ D+ + V
Sbjct: 180 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 236
Score = 120 (47.3 bits), Expect = 0.00081, P = 0.00081
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P + + IF++NL K L D F+ G++L I + +G+SKG G V+FE+ E
Sbjct: 606 PGVARKAC-QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPE 663
Query: 93 SAQNAIDKLNGMLINDKQVFV 113
A+ A +NGM ++ +++ V
Sbjct: 664 VAERACRMMNGMKLSGREIDV 684
Score = 101 (40.6 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ K +FV+NL T + LK F E G + A + + +GKSK G V FE+ + A
Sbjct: 608 VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAE 666
Query: 187 KAVEALNGKKFDDRE 201
+A +NG K RE
Sbjct: 667 RACRMMNGMKLSGRE 681
Score = 99 (39.9 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
++++NL + LK+ F+E G + + + +G SKG G V F +PE A RA MN
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 673
Query: 297 GKMIVSKPLYVAV 309
G + + + V +
Sbjct: 674 GMKLSGREIDVRI 686
Score = 39 (18.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 449 MGAGSMLPVPVDMGAGIPR 467
MG VP MGAG+ R
Sbjct: 485 MGLSMDRMVPTGMGAGLER 503
Score = 37 (18.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 450 GAGSMLPVPVDMGAGIPR 467
GAG +P MG GI R
Sbjct: 353 GAGGSVPGIERMGPGIDR 370
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 185 (70.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 50/191 (26%), Positives = 89/191 (46%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFEN 181
E A TK F+ N+ + LK + E G +T ++ D +GKS+ V F+
Sbjct: 61 EPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKM 120
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA E LN R V +++ G+ + + + G +++ N
Sbjct: 121 EESMKKAAEVLNKHSLSGRPLKV---------KEDPDGEHARRAMQKAGRL-GSTVFVAN 170
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L + +KLKE+FS G + ++ D G S+G G V F EA +A++ NG+++
Sbjct: 171 LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 230
Query: 302 SKPLYVAVAQR 312
+P++V + +R
Sbjct: 231 DRPMHVKMDER 241
Score = 180 (68.4 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 53/184 (28%), Positives = 89/184 (48%)
Query: 44 FIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
FI N+ + ++L D G + ++ D G+S+G V+F+ +ES + A + LN
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132
Query: 103 GMLINDKQVFV-----GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
++ + + V G R+ ++ + + VFV NLD + LK++F G
Sbjct: 133 KHSLSGRPLKVKEDPDGEHARRAMQKAGRLGS---TVFVANLDYKVGWKKLKEVFSMAGV 189
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
+ A ++ D DGKS+ G V FE + +A +A+ NG+ DR +V K ER
Sbjct: 190 VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV----KMDERALP- 244
Query: 218 KGQF 221
KG F
Sbjct: 245 KGDF 248
Score = 141 (54.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 3 MLSSAARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGT-GN-IFIKNLDKSIDHKA 56
M S +A +VLN L+ + +++ H +++K+G G+ +F+ NLD + K
Sbjct: 120 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK 179
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
L + FS G ++ I D G+S+G G V FE A AI NG L+ D+ + V
Sbjct: 180 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 236
Score = 120 (47.3 bits), Expect = 0.00081, P = 0.00081
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P + + IF++NL K L D F+ G++L I + +G+SKG G V+FE+ E
Sbjct: 606 PGVARKAC-QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPE 663
Query: 93 SAQNAIDKLNGMLINDKQVFV 113
A+ A +NGM ++ +++ V
Sbjct: 664 VAERACRMMNGMKLSGREIDV 684
Score = 101 (40.6 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ K +FV+NL T + LK F E G + A + + +GKSK G V FE+ + A
Sbjct: 608 VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAE 666
Query: 187 KAVEALNGKKFDDRE 201
+A +NG K RE
Sbjct: 667 RACRMMNGMKLSGRE 681
Score = 99 (39.9 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
++++NL + LK+ F+E G + + + +G SKG G V F +PE A RA MN
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 673
Query: 297 GKMIVSKPLYVAV 309
G + + + V +
Sbjct: 674 GMKLSGREIDVRI 686
Score = 39 (18.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 449 MGAGSMLPVPVDMGAGIPR 467
MG VP MGAG+ R
Sbjct: 485 MGLSMDRMVPTGMGAGLER 503
Score = 37 (18.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 450 GAGSMLPVPVDMGAGIPR 467
GAG +P MG GI R
Sbjct: 353 GAGGSVPGIERMGPGIDR 370
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 185 (70.2 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 50/191 (26%), Positives = 89/191 (46%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFEN 181
E A TK F+ N+ + LK + E G +T ++ D +GKS+ V F+
Sbjct: 75 EPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKM 134
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA E LN R V +++ G+ + + + G +++ N
Sbjct: 135 EESMKKAAEVLNKHSLSGRPLKV---------KEDPDGEHARRAMQKAGRL-GSTVFVAN 184
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L + +KLKE+FS G + ++ D G S+G G V F EA +A++ NG+++
Sbjct: 185 LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 244
Query: 302 SKPLYVAVAQR 312
+P++V + +R
Sbjct: 245 DRPMHVKMDER 255
Score = 180 (68.4 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 53/184 (28%), Positives = 89/184 (48%)
Query: 44 FIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
FI N+ + ++L D G + ++ D G+S+G V+F+ +ES + A + LN
Sbjct: 87 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 146
Query: 103 GMLINDKQVFV-----GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
++ + + V G R+ ++ + + VFV NLD + LK++F G
Sbjct: 147 KHSLSGRPLKVKEDPDGEHARRAMQKAGRLGS---TVFVANLDYKVGWKKLKEVFSMAGV 203
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
+ A ++ D DGKS+ G V FE + +A +A+ NG+ DR +V K ER
Sbjct: 204 VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV----KMDERALP- 258
Query: 218 KGQF 221
KG F
Sbjct: 259 KGDF 262
Score = 141 (54.7 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 3 MLSSAARALDVLNFTPLNNKSIRIMYS----HRDPSIRKSGT-GN-IFIKNLDKSIDHKA 56
M S +A +VLN L+ + +++ H +++K+G G+ +F+ NLD + K
Sbjct: 134 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK 193
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
L + FS G ++ I D G+S+G G V FE A AI NG L+ D+ + V
Sbjct: 194 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 250
Score = 120 (47.3 bits), Expect = 0.00083, P = 0.00083
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P + + IF++NL K L D F+ G++L I + +G+SKG G V+FE+ E
Sbjct: 620 PGVARKAC-QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPE 677
Query: 93 SAQNAIDKLNGMLINDKQVFV 113
A+ A +NGM ++ +++ V
Sbjct: 678 VAERACRMMNGMKLSGREIDV 698
Score = 101 (40.6 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ K +FV+NL T + LK F E G + A + + +GKSK G V FE+ + A
Sbjct: 622 VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAE 680
Query: 187 KAVEALNGKKFDDRE 201
+A +NG K RE
Sbjct: 681 RACRMMNGMKLSGRE 695
Score = 99 (39.9 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
++++NL + LK+ F+E G + + + +G SKG G V F +PE A RA MN
Sbjct: 629 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 687
Query: 297 GKMIVSKPLYVAV 309
G + + + V +
Sbjct: 688 GMKLSGREIDVRI 700
Score = 46 (21.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 449 MGAGSMLPVPVDMGAGIPR 467
MG G VP MGAG+ R
Sbjct: 499 MGLGMERMVPAGMGAGLER 517
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 152 (58.6 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 54/172 (31%), Positives = 84/172 (48%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGE-YGTIT-SAVVMRDGDGK------SKCFGFVNFENAD 183
+ +FVKNL TTD L+ +F + YG + SA + + + S FGFV F A
Sbjct: 641 STLFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLSMGFGFVQFYTAF 700
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG--LNLYIKN 241
DA A++ + G+ D + K S RE KG ++ KE K QG L ++N
Sbjct: 701 DAKTALKDMQGELLDGHSLEL----KISHRENADKGALKR--KEVKQKEQGECTKLLVRN 754
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 291
L ++++ LF FG + + ++ + P +G GFV F + +EA RA
Sbjct: 755 LPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRA 806
Score = 130 (50.8 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 69/286 (24%), Positives = 115/286 (40%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
TG +F++NL + L F +G + ++ D +G KGF V+F E+A A
Sbjct: 278 TGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAY 337
Query: 99 DKLNGMLINDKQVFV--GHFLRKQE--RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE 154
L+G + + + + G R +E E+ + +N L E KK F E
Sbjct: 338 SALDGYVFKGRMMHILPGDEKRTKEGEEESEVVPDDPDNP----LKAEAKKEKKKKSFKE 393
Query: 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV-EALNGKKFD----DREWYVGKAQK 209
+ GK+ F A+ A + + LN KK D D+ G
Sbjct: 394 ----EKDEQKKASAGKTAHSWNALFLGANAIADTLAQRLNVKKSDLLTSDQGESAGVRLA 449
Query: 210 KSERE--QELKGQF-EQAMK-----ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 261
+E +E + F E +K + +K + KNL ++ E+L+ +F +FG
Sbjct: 450 LAETRLVRETRDFFLENGVKLDAFSKPAEKRSDTVMLAKNLPAGVESEELQRMFEKFGDC 509
Query: 262 TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
T +M G+S V P +A +A + S+PLY+
Sbjct: 510 TKV-LMPTEGGVS---ALVIMGNPVDAKKAFRALAYSRFRSQPLYL 551
Score = 119 (46.9 bits), Expect = 7.8e-16, Sum P(3) = 7.8e-16
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 118 RKQERETVAIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFG 175
R +E ETV K + +F++NL +T ++DL+ +F +YG ++ V+ D G K F
Sbjct: 264 RDKEEETVREKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFA 323
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKKSEREQE 216
V F + A A AL+G F R ++ G ++ E E+E
Sbjct: 324 IVEFVFPEAAVAAYSALDGYVFKGRMMHILPGDEKRTKEGEEE 366
Score = 106 (42.4 bits), Expect = 7.8e-16, Sum P(3) = 7.8e-16
Identities = 34/121 (28%), Positives = 63/121 (52%)
Query: 209 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE-FGTIT-SCKV 266
K+ E E + K +Q+ KE ++ G L++KNL D L+ LF + +G + S ++
Sbjct: 618 KEVEAEDKKKSSKKQSEKE-IES--GSTLFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQI 674
Query: 267 MR-----DPSG-ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320
+ +P+ +S G GFV F T +A AL +M G+++ L + ++ R+ + L
Sbjct: 675 SKKLNPAEPTKPLSMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISHRENADKGAL 734
Query: 321 Q 321
+
Sbjct: 735 K 735
Score = 104 (41.7 bits), Expect = 7.8e-16, Sum P(3) = 7.8e-16
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 99
T + +KNL + + L F +G I + G+ +GF FV F ++ SA NA+
Sbjct: 2 TTRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALA 61
Query: 100 KLNGMLINDKQVFV 113
K N N K++ V
Sbjct: 62 KSNQTFFNSKKLTV 75
Score = 102 (41.0 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+ VKNL + T++ L+K F +YG I+ A + +GK + F FV F + A+ A+ N
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
Query: 194 GKKFDDRE 201
F+ ++
Sbjct: 65 QTFFNSKK 72
Score = 99 (39.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 33/155 (21%), Positives = 70/155 (45%)
Query: 176 FVNFENADDAAKAVEA----LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV-D 230
FV F D +A++ L G K + + + + E + +ETV +
Sbjct: 214 FVTFNRPPDVRRALQKDGQFLGGFKIGIEKIETPEPEHEVIEEHGASLESRDKEEETVRE 273
Query: 231 KF-QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 288
K + L+++NL + ++ L+ LF ++G ++ +V+ D +G KG V F PE A
Sbjct: 274 KILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAA 333
Query: 289 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 323
A + ++G + + +++ K + +++
Sbjct: 334 VAAYSALDGYVFKGRMMHILPGDEKRTKEGEEESE 368
Score = 64 (27.6 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 34/160 (21%), Positives = 69/160 (43%)
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
D + + + +Y +SA G+ K + + E + A K + + KFD
Sbjct: 83 DANKPRAWSKYAKDSSAYKRTHGE-KEEANPGKSDETEEPAPKKQK--DDAKFDQFLEAK 139
Query: 205 GKA-QKKSEREQELKGQFEQAMKETVDKFQG---LNLYIKNLGDSIDDEKLKELFSEFGT 260
G +K+ + ++ + ++ M E +D G L+L L S + +KE +
Sbjct: 140 GVVVEKEVKLSKDKSAEAKKLMAELMDGIGGDTSLSLIFSGLPSSAKGKNIKEWLNPI-R 198
Query: 261 ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
+ + K+ R+ + FV F+ P + RAL + +G+ +
Sbjct: 199 VKAMKIARNED---VAAAFVTFNRPPDVRRAL-QKDGQFL 234
>UNIPROTKB|H0Y6X6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
ProteinModelPortal:H0Y6X6 PRIDE:H0Y6X6 Ensembl:ENST00000437136
Bgee:H0Y6X6 Uniprot:H0Y6X6
Length = 195
Score = 206 (77.6 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 43/106 (40%), Positives = 68/106 (64%)
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 77 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 134
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 135 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 180
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 166 (63.5 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 55/207 (26%), Positives = 97/207 (46%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+F+ + + ++DL+ +F E+G I V++D G K F+ + + A KA AL
Sbjct: 49 LFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTAL 108
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K + + + + E +G+ D+ L++ L ++ ++
Sbjct: 109 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLNKQQCEDDVR 152
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
LF FG+I C ++R P G SKG FV +ST EA A++ ++G + S L V
Sbjct: 153 RLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKF 212
Query: 310 AQRKEERRAR-LQAQFSQM---RPVAM 332
A +ER R +Q QM P+A+
Sbjct: 213 ADTDKERTIRRMQQMAGQMGIFNPMAL 239
Score = 149 (57.5 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+FI + +++D K L F FG I + D +G KG F+ + +ESA A L
Sbjct: 49 LFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTAL 108
Query: 102 NGMLINDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L++ ++D++++F +G+I
Sbjct: 109 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSIEE 163
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
++R DG SK FV + +A A+ AL+G +
Sbjct: 164 CTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQ 199
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L F FGN++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 436 NLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 495
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 496 MNGFQIGMKRLKV 508
Score = 128 (50.1 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 32/86 (37%), Positives = 45/86 (52%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L ++F FG + S KV D + SK GFV+F P A A
Sbjct: 433 EGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAA 492
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 493 IQSMNGFQIGMKRLKVQLKRPKDANR 518
Score = 119 (46.9 bits), Expect = 0.00070, P = 0.00070
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L ++F +G + S+ V D +SKCFGFV+F+N A A+++
Sbjct: 436 NLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 495
Query: 192 LNG 194
+NG
Sbjct: 496 MNG 498
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 172 (65.6 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 57/196 (29%), Positives = 90/196 (45%)
Query: 145 DEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
++DLK IF ++G I V++D G K F+ + D A KA AL+ +K
Sbjct: 21 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG--- 77
Query: 204 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 263
+ + + + E +G+ D+ L++ LG DE ++++F FGTI
Sbjct: 78 MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVRKMFEPFGTIDE 124
Query: 264 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAVAQRKEERRAR- 319
C V+R P G SKG FV F T EA A+ ++ + S L V A ++ER R
Sbjct: 125 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRR 184
Query: 320 ---LQAQFSQMRPVAM 332
+ Q P+A+
Sbjct: 185 MQQVATQLGMFSPIAL 200
Score = 141 (54.7 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 41/151 (27%), Positives = 71/151 (47%)
Query: 48 LDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLI 106
+ + ++ K L F FG I + D +G KG F+ + ++SA A L+
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALH---- 70
Query: 107 NDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 165
+++ G Q + + + + +FV L + TDED++K+F +GTI V+R
Sbjct: 71 -EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 129
Query: 166 DGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
DG SK FV F+ +A A+ L+ +
Sbjct: 130 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 160
Score = 135 (52.6 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-P 270
+++Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D
Sbjct: 360 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 131 (51.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 192 LNG 194
+NG
Sbjct: 441 MNG 443
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 86 (35.3 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F+ L K + + F FG I C + G SKG FV+F+ AQ AI+ L+
Sbjct: 98 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 157
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 56/199 (28%), Positives = 88/199 (44%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK +F ++G I V++D G K F+ + D A KA AL
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K G A+ + + + + + K L++ L +E +
Sbjct: 107 HEQKT-----LPGMARPIQVKPADSESRGGRDRK----------LFVGMLNKQQSEEDVL 151
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
LF FG I C V+R P G SKG FV FS+ EA A+ ++G + S L V
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 211
Query: 310 AQRKEERRAR-LQAQFSQM 327
A +ER R +Q Q+
Sbjct: 212 ADTDKERTLRRMQQMVGQL 230
Score = 148 (57.2 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 40/157 (25%), Positives = 77/157 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + +D K L F FG I + D +G KG F+ + ++SA A L
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 102 NGMLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+ +++ G ++ + ++ + + +FV L++ ++ED+ ++F +G I
Sbjct: 107 H-----EQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVID 161
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F + +A A+ AL+G +
Sbjct: 162 ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 198
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L F FGNI+S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 460
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 461 MNGFQIGMKRLKV 473
Score = 128 (50.1 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L ++F FG I S KV D + SK GFV+F P A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAA 457
Query: 292 LAEMNGKMIVSKPLYVAVAQRKE 314
+ MNG I K L V + + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
Score = 125 (49.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L ++F +G I S+ V D +SKCFGFV+F+N A A++A
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 460
Query: 192 LNG 194
+NG
Sbjct: 461 MNG 463
Score = 88 (36.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK 91
D R +F+ L+K + + F FG I C + G SKG FV+F +
Sbjct: 125 DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH 184
Query: 92 ESAQNAIDKLNG 103
AQ AI L+G
Sbjct: 185 TEAQAAIHALHG 196
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 224 (83.9 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 60/191 (31%), Positives = 95/191 (49%)
Query: 118 RKQERETVAIKTKF-NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 176
R ER+ A K F N++FV+NL T EDLK++FG G + A ++ G + G
Sbjct: 107 RDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS-KGHHRGMGT 165
Query: 177 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 236
V F + A+ +G F DR+ V + E +E ++A +E +D G
Sbjct: 166 VEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFS---KKATREEIDN--GFE 220
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
++I NL S++ + LK++F E G + V D +G S+G G V + T +E RA+ N
Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFN 280
Query: 297 GKMIVSKPLYV 307
G + + L V
Sbjct: 281 GMEVEGRVLEV 291
Score = 194 (73.4 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 58/210 (27%), Positives = 98/210 (46%)
Query: 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ 95
+++ +IF++NL + L + F + G ++ I T G +G G V+F ES Q
Sbjct: 117 KRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS-KGHHRGMGTVEFTKNESVQ 175
Query: 96 NAIDKLNGMLINDKQVFVGH----------FLRKQERETVAIKTKFNNVFVKNLDESTTD 145
+AI K +G L D+++ V F +K RE I F VF+ NL S
Sbjct: 176 DAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREE--IDNGFE-VFIINLPYSMNW 232
Query: 146 EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 205
+ LK +F E G + A V D +G S+ FG V + D+ +A++ NG + + R V
Sbjct: 233 QSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVR 292
Query: 206 KAQKKSEREQELKGQFEQAMKETVDKFQGL 235
+ + + + Q + +++T GL
Sbjct: 293 EGRFNKRKNNDRYNQRREDLEDTRGTEPGL 322
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 205 (77.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 52/181 (28%), Positives = 98/181 (54%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
++V LD T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G++ E V A + + A KE D ++++ +L + ++DE L +
Sbjct: 147 GRRVHQSEIRVNWAYQAAT----------SATKE--DTSNHFHIFVGDLSNEVNDEVLTQ 194
Query: 254 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 195 AFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQ 254
Query: 313 K 313
K
Sbjct: 255 K 255
Score = 200 (75.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 46/180 (25%), Positives = 89/180 (49%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ LD + L F + G++ + KI D + + +GFV++++ +A A+ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
G ++ ++ V + T + ++FV +L DE L + F +G+++ A
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206
Query: 163 VMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQEL 217
VM D G+S+ +GFV F + DA KA+ +++G+ R W K Q ++Q +
Sbjct: 207 VMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQAM 266
Score = 139 (54.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 30/111 (27%), Positives = 61/111 (54%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDP-SIRKSGTGN---IFIKNLDKSIDHKALHDTF 61
+A RA+ LN ++ IR+ ++++ S K T N IF+ +L ++ + L F
Sbjct: 137 AADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAF 196
Query: 62 SSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
S FG++ ++ D +G+S+G+GFV F ++ A+ A+ ++G + + +
Sbjct: 197 SVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Score = 73 (30.8 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 112 FVGHFLRKQE---RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
F H ++ E +T A +T +V NL TT D+ +F +G + + D
Sbjct: 282 FPTHGMQSYEMVVNQTPAYQT---TCYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-- 336
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
+ F F+ ++ ++AA+A+ LNG + R
Sbjct: 337 ---RGFAFIKMDSHENAAQAICGLNGYNVNGR 365
Score = 70 (29.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+E + +T +Q Y+ NL + LF FG + + D +G F+
Sbjct: 290 YEMVVNQT-PAYQ-TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFI 342
Query: 281 AFSTPEEASRALAEMNGKMIVSKPL 305
+ E A++A+ +NG + +PL
Sbjct: 343 KMDSHENAAQAICGLNGYNVNGRPL 367
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 157 (60.3 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 47/162 (29%), Positives = 74/162 (45%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENK 91
PS + +F+ + + + F +G++ SC I D S Q SKG FV F ++
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A A G L N K V G Q + +F+ L + +E+L++I
Sbjct: 107 KDAIEA----QGALHNIK-VIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREI 161
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
F ++G I V+RD DGKS+ FV F N A A + ++
Sbjct: 162 FAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 140 (54.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L +TF+ FG ILS K+ D + SK FGFV +EN +SA NAI
Sbjct: 504 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 563
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 564 MNGFQIGSKRLKV 576
Score = 132 (51.5 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 32/82 (39%), Positives = 44/82 (53%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D DL F +G I SA V D SKCFGFV++ENA A A+ A
Sbjct: 504 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 563
Query: 192 LNGKKFDDREWYVGKAQKKSER 213
+NG + + K Q K +R
Sbjct: 564 MNGFQIGSKRL---KVQLKVDR 582
Score = 130 (50.8 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 49/198 (24%), Positives = 90/198 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+FV + + D +++F +YG++ S ++RD KS A+K +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD---KST-----------QASKGCCFVT 102
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSIDDEK 250
F R+ + +AQ + ++G + D + N L+I L ++E
Sbjct: 103 ---FYHRKDAI-EAQGALHNIKVIEGMHHPVQMKPADT-ENRNERKLFIGQLSKKHNEEN 157
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYV 307
L+E+F++FG I C V+RD G S+G FV F+ A A EM+ + S PL V
Sbjct: 158 LREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVV 217
Query: 308 AVAQRKEERRARLQAQFS 325
A ++++ + ++ +
Sbjct: 218 KFADTQKDKDVKTKSMIT 235
Score = 119 (46.9 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 292
G NL+I +L D L F+ FG I S KV D + +SK GFV++ + A+ A+
Sbjct: 502 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 561
Query: 293 AEMNGKMIVSKPLYV 307
+ MNG I SK L V
Sbjct: 562 SAMNGFQIGSKRLKV 576
>UNIPROTKB|H0YAS6 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000520868
Uniprot:H0YAS6
Length = 169
Score = 204 (76.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 74 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 130
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 131 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 159
>UNIPROTKB|H0YB75 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR002004
Pfam:PF00658 PROSITE:PS51309 SMART:SM00517 GO:GO:0005737
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000522658 Bgee:H0YB75
Uniprot:H0YB75
Length = 183
Score = 204 (76.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 88 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 144
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPA 561
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 145 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 173
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 201 (75.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 46/172 (26%), Positives = 93/172 (54%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 102 NGMLINDKQVFVGHFLRKQERETV----AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYG 156
N +++ + + VG + + + A + + FN ++V ++ + +D+D+K +F +G
Sbjct: 162 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 221
Query: 157 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
I S + RD GK K +GF+ +E A + AV ++N + VGKA
Sbjct: 222 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 166 (63.5 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 47/180 (26%), Positives = 87/180 (48%)
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 178
Q + +AI + V+V ++ ++ +++ F +G I S + D K K F FV
Sbjct: 91 QRQRALAIMCR---VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE 147
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-L 237
+E + A A+E +N R VG R + GQ + + + ++ + N +
Sbjct: 148 YEVPEAAQLALEQMNSVMLGGRNIKVG-------RPSNI-GQAQPIIDQLAEEARAFNRI 199
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMN 296
Y+ ++ + D+ +K +F FG I SC + RDP+ G KG GF+ + + + A++ MN
Sbjct: 200 YVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 259
Score = 69 (29.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 27/125 (21%), Positives = 56/125 (44%)
Query: 211 SEREQ-ELKGQFEQ--AMKETVDKFQGLNLYIKNLGD--SIDDEKLKELFSE---FGTIT 262
SE+E + G + M++ + K + + ++N+ D IDD+ E+ E FG +
Sbjct: 406 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN 465
Query: 263 SCKVMRDPSGISKGSG-----FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ ++ G + + FV FS E +A+ ++NG+ + + V ++
Sbjct: 466 RVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEVYDQERFDN 525
Query: 318 ARLQA 322
+ L A
Sbjct: 526 SDLSA 530
Score = 42 (19.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 465 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
IP SVG PI A L P++++ E L+P E+ E
Sbjct: 361 IPVTIPSVGVVNPILASPPTLGLLEPKKEKE--EEELFPESERPE 403
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 172 (65.6 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 57/196 (29%), Positives = 90/196 (45%)
Query: 145 DEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
++DLK IF ++G I V++D G K F+ + D A KA AL+ +K
Sbjct: 97 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG--- 153
Query: 204 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 263
+ + + + E +G+ D+ L++ LG DE ++++F FGTI
Sbjct: 154 MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVRKMFEPFGTIDE 200
Query: 264 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAVAQRKEERRAR- 319
C V+R P G SKG FV F T EA A+ ++ + S L V A ++ER R
Sbjct: 201 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRR 260
Query: 320 ---LQAQFSQMRPVAM 332
+ Q P+A+
Sbjct: 261 MQQVATQLGMFSPIAL 276
Score = 141 (54.7 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 41/151 (27%), Positives = 71/151 (47%)
Query: 48 LDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLI 106
+ + ++ K L F FG I + D +G KG F+ + ++SA A L+
Sbjct: 91 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALH---- 146
Query: 107 NDKQVFVGHFLRKQERETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 165
+++ G Q + + + + +FV L + TDED++K+F +GTI V+R
Sbjct: 147 -EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 205
Query: 166 DGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
DG SK FV F+ +A A+ L+ +
Sbjct: 206 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 236
Score = 132 (51.5 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSG 272
+Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D +
Sbjct: 436 QQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATN 492
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 493 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 537
Score = 131 (51.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 455 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 514
Query: 192 LNG 194
+NG
Sbjct: 515 MNG 517
Score = 131 (51.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 455 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 514
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 515 MNGFQIGMKRLKV 527
Score = 86 (35.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F+ L K + + F FG I C + G SKG FV+F+ AQ AI+ L+
Sbjct: 174 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 233
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 197 (74.4 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 45/138 (32%), Positives = 74/138 (53%)
Query: 77 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFV 136
+ S G+GFV+F K+ A AI++LNG ++ K + V + + T A N+++
Sbjct: 148 NNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHA------NLYI 201
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGK 195
L+ T+ +LK++FG +G + ++ D D G S+C GFV+F +A KAV ++NG
Sbjct: 202 NRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGA 261
Query: 196 K--FDDREWYVGKAQKKS 211
F YV A + S
Sbjct: 262 NIPFQSTPIYVKFANQLS 279
Score = 183 (69.5 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 61/198 (30%), Positives = 92/198 (46%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVM----RDGDGKSKCFGFVNFENADDAAKA 188
N+ V N+ +S +LK +F ++G I S ++ +DG+G S +N N++ +
Sbjct: 83 NLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNSNIN--INSNNSNGSNSN 140
Query: 189 VEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKET-VDKFQG-------LNL 237
N + K KK E ++L G FE K V Q NL
Sbjct: 141 NNNNNSNNNSSLGYGFVKFSKKDEAAMAIEQLNG-FEVDSKPLKVSYAQASSSQSTHANL 199
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 296
YI L + + LKE+F FG + K++ DP +G S+ GFV FS EA +A++ MN
Sbjct: 200 YINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMN 259
Query: 297 GKMIV--SKPLYVAVAQR 312
G I S P+YV A +
Sbjct: 260 GANIPFQSTPIYVKFANQ 277
Score = 145 (56.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA A++ LN +++K +++ Y+ S +S N++I L+ + + L + F SFG+
Sbjct: 165 AAMAIEQLNGFEVDSKPLKVSYAQASSS--QSTHANLYINRLEPHVTNANLKEVFGSFGD 222
Query: 67 ILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 103
++ KI TD +G S+ GFV F + A A+ +NG
Sbjct: 223 VIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNG 260
Score = 72 (30.4 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
++I NL ++ID+ L +LF+ FG I+ +++ + G + + + A+ +N
Sbjct: 454 IHISNLPNNIDETFLYKLFA-FGAISGVQLLNN------GQAIITYLDYQTVQNAINTLN 506
Query: 297 GKMIVSKPLYV 307
GK+I + L V
Sbjct: 507 GKIISGRSLKV 517
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 159 (61.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 51/175 (29%), Positives = 80/175 (45%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
V+V NL LK + G + A V+ +G SK G V + + A AV L+
Sbjct: 113 VYVGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPNGMSKGCGIVEYATREQAQNAVNTLS 172
Query: 194 GKKFDDREWYVGKAQKKSEREQ--ELKGQFEQAMKETVDKFQG------LNLYIKNLGDS 245
+ +R YV + ++ R +G F + + G LY+ NL +
Sbjct: 173 NQNLMNRLVYVREDREPEPRFSGGPSRGDFGGPGRGGFGGYGGGPGGGGRQLYVSNLPFN 232
Query: 246 IDDEKLKELF---SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+ + LK+LF ++ GT+ V D SG KGSG VAF +P++A A+ + NG
Sbjct: 233 VGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNAIQQFNG 287
Score = 117 (46.2 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
K N ++V+NL ST ++DL +F G + A + + +G+S+ G V F+NAD A ++
Sbjct: 379 KSNTIYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVQFDNADTAETSI 438
Query: 190 EALNGKKFDDR 200
G ++ R
Sbjct: 439 AKFTGYQYGGR 449
Score = 109 (43.4 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
+Y++NL S ++ L +LFS G + ++ +P+G S+G+G V F + A ++A+
Sbjct: 383 IYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVQFDNADTAETSIAKFT 442
Query: 297 GKMIVSKPL 305
G +PL
Sbjct: 443 GYQYGGRPL 451
Score = 109 (43.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTF---SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ 95
G +++ NL ++ + L D F + G ++ + TD SG+ KG G V FE+ + A+
Sbjct: 220 GGRQLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDAR 279
Query: 96 NAIDKLNG 103
NAI + NG
Sbjct: 280 NAIQQFNG 287
Score = 104 (41.7 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 134 VFVKNLDESTTDEDLKKIF---GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
++V NL + +DLK +F + GT+ A V D G+ K G V FE+ DDA A++
Sbjct: 224 LYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNAIQ 283
Query: 191 ALNGKKFDDR 200
NG + R
Sbjct: 284 QFNGYDWQGR 293
Score = 101 (40.6 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 34 SIRKSGTGN--IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK 91
S+R+S + +++ NL + L D G+++ + +G SKG G V++ +
Sbjct: 102 SVRESSQQDRRVYVGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPNGMSKGCGIVEYATR 161
Query: 92 ESAQNAIDKLNGMLINDKQVFV 113
E AQNA++ L+ + ++ V+V
Sbjct: 162 EQAQNAVNTLSNQNLMNRLVYV 183
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 201 (75.8 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 46/172 (26%), Positives = 93/172 (54%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 102 NGMLINDKQVFVGHFLRKQERETV----AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYG 156
N +++ + + VG + + + A + + FN ++V ++ + +D+D+K +F +G
Sbjct: 162 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 221
Query: 157 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
I S + RD GK K +GF+ +E A + AV ++N + VGKA
Sbjct: 222 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 166 (63.5 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 47/180 (26%), Positives = 87/180 (48%)
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 178
Q + +AI + V+V ++ ++ +++ F +G I S + D K K F FV
Sbjct: 91 QRQRALAIMCR---VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE 147
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-L 237
+E + A A+E +N R VG R + GQ + + + ++ + N +
Sbjct: 148 YEVPEAAQLALEQMNSVMLGGRNIKVG-------RPSNI-GQAQPIIDQLAEEARAFNRI 199
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMN 296
Y+ ++ + D+ +K +F FG I SC + RDP+ G KG GF+ + + + A++ MN
Sbjct: 200 YVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 259
Score = 66 (28.3 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 27/125 (21%), Positives = 55/125 (44%)
Query: 211 SEREQ-ELKGQFEQ--AMKETVDKFQGLNLYIKNLGD--SIDDEKLKELFSE---FGTIT 262
SE+E + G + M++ + K + + ++N+ D IDD+ E+ E FG +
Sbjct: 406 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN 465
Query: 263 SCKVMRDPSGISKGSG-----FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ ++ G + + FV FS E +A+ +NG+ + + V ++
Sbjct: 466 RVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 525
Query: 318 ARLQA 322
+ L A
Sbjct: 526 SDLSA 530
Score = 42 (19.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 465 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
IP SVG PI A L P++++ E L+P E+ E
Sbjct: 361 IPVTIPSVGVVNPILASPPTLGLLEPKKEKE--EEELFPESERPE 403
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 200 (75.5 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 38/56 (67%), Positives = 46/56 (82%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DT
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 118
Score = 128 (50.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 32/118 (27%), Positives = 61/118 (51%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL 148
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKAL 115
Score = 113 (44.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 201 (75.8 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 46/172 (26%), Positives = 93/172 (54%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++
Sbjct: 94 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 153
Query: 102 NGMLINDKQVFVGHFLRKQERETV----AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYG 156
N +++ + + VG + + + A + + FN ++V ++ + +D+D+K +F +G
Sbjct: 154 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 213
Query: 157 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
I S + RD GK K +GF+ +E A + AV ++N + VGKA
Sbjct: 214 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 265
Score = 166 (63.5 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 47/180 (26%), Positives = 87/180 (48%)
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 178
Q + +AI + V+V ++ ++ +++ F +G I S + D K K F FV
Sbjct: 83 QRQRALAIMCR---VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE 139
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-L 237
+E + A A+E +N R VG R + GQ + + + ++ + N +
Sbjct: 140 YEVPEAAQLALEQMNSVMLGGRNIKVG-------RPSNI-GQAQPIIDQLAEEARAFNRI 191
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMN 296
Y+ ++ + D+ +K +F FG I SC + RDP+ G KG GF+ + + + A++ MN
Sbjct: 192 YVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 251
Score = 65 (27.9 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 27/125 (21%), Positives = 55/125 (44%)
Query: 211 SEREQ-ELKGQFEQ--AMKETVDKFQGLNLYIKNLGD--SIDDEKLKELFSE---FGTIT 262
SE+E + G + M++ + K + + ++N+ D IDD+ E+ E FG +
Sbjct: 398 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN 457
Query: 263 SCKVMRDPSGISKGSG-----FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ ++ G + + FV FS E +A+ +NG+ + + V ++
Sbjct: 458 RVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 517
Query: 318 ARLQA 322
+ L A
Sbjct: 518 SDLSA 522
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 201 (75.8 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 46/172 (26%), Positives = 93/172 (54%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++
Sbjct: 115 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 174
Query: 102 NGMLINDKQVFVGHFLRKQERETV----AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYG 156
N +++ + + VG + + + A + + FN ++V ++ + +D+D+K +F +G
Sbjct: 175 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 234
Query: 157 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
I S + RD GK K +GF+ +E A + AV ++N + VGKA
Sbjct: 235 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 286
Score = 166 (63.5 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 47/180 (26%), Positives = 87/180 (48%)
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 178
Q + +AI + V+V ++ ++ +++ F +G I S + D K K F FV
Sbjct: 104 QRQRALAIMCR---VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE 160
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-L 237
+E + A A+E +N R VG R + GQ + + + ++ + N +
Sbjct: 161 YEVPEAAQLALEQMNSVMLGGRNIKVG-------RPSNI-GQAQPIIDQLAEEARAFNRI 212
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMN 296
Y+ ++ + D+ +K +F FG I SC + RDP+ G KG GF+ + + + A++ MN
Sbjct: 213 YVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 272
Score = 65 (27.9 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 27/125 (21%), Positives = 55/125 (44%)
Query: 211 SEREQ-ELKGQFEQ--AMKETVDKFQGLNLYIKNLGD--SIDDEKLKELFSE---FGTIT 262
SE+E + G + M++ + K + + ++N+ D IDD+ E+ E FG +
Sbjct: 419 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN 478
Query: 263 SCKVMRDPSGISKGSG-----FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ ++ G + + FV FS E +A+ +NG+ + + V ++
Sbjct: 479 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 538
Query: 318 ARLQA 322
+ L A
Sbjct: 539 SDLSA 543
Score = 42 (19.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 465 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
IP SVG PI A L P++++ E L+P E+ E
Sbjct: 374 IPVTIPSVGVVNPILASPPTLGLLEPKKEKE--EEELFPESERPE 416
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 165 (63.1 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 55/198 (27%), Positives = 86/198 (43%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK +F E+G I V++D G K F+ + D A KA AL
Sbjct: 9 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K R ++K + E D+ L++ LG +E ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPAASEGRGE--DR----KLFVGMLGKQQGEEDVR 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
LF FG I C V+R P G SKG FV F + EA A+ ++G S+ + V R
Sbjct: 113 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHG----SRTMAVRAGAR 168
Query: 313 KEERRARLQAQFSQMRPV 330
+ + FS R +
Sbjct: 169 GQGEAGGVGPGFSSPRAI 186
Score = 141 (54.7 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 39/156 (25%), Positives = 75/156 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + +D + L F FG I + D +G KG F+ + ++SA A L
Sbjct: 9 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 102 NGMLINDKQVFVGHFLRKQERETVAI-KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + +ED++++F +G I
Sbjct: 69 H-----EQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEE 123
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F + +A A+++L+G +
Sbjct: 124 CTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSR 159
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L TF FG ++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 343 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 402
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 403 MNGFQIGMKRLKV 415
Score = 126 (49.4 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L + F FG + S KV D + SK GFV+F P A A
Sbjct: 340 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 399
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 400 IQAMNGFQIGMKRLKVQLKRPKDANR 425
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 343 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 402
Query: 192 LNG 194
+NG
Sbjct: 403 MNG 405
Score = 40 (19.1 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 450 GAGSM--LPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
G GS+ LP P+ + P + GQP T + L+
Sbjct: 249 GPGSLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLS 287
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 165 (63.1 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 44/164 (26%), Positives = 83/164 (50%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 189
+F+KNL+ TT+E LK +F + G + S + + G S FGFV + + A KA+
Sbjct: 692 LFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKAL 751
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ L G D + V + +++ + G+ + + + D ++++ D
Sbjct: 752 KQLQGHVVDGHKLEV-RISERATKSALNSGRHKHSPRRQTDT----KIWVRVCPFQGDSR 806
Query: 250 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 291
+LKE+F+ FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 807 ELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRA 850
Score = 152 (58.6 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAI 98
+FIKNL+ + L FS G + SC I+ G+ S GFGFV++ E AQ A+
Sbjct: 692 LFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKAL 751
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------NVFVKNLDESTTDEDLKKI 151
+L G +++ ++ V R + + + K + ++V+ +LK+I
Sbjct: 752 KQLQGHVVDGHKLEVRISERATKSALNSGRHKHSPRRQTDTKIWVRVCPFQGDSRELKEI 811
Query: 152 FGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEAL--NGKKFDDR---EWYV 204
F +G + + + + G G + FGFV+F DA +A AL + + R EW
Sbjct: 812 FNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWAD 871
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 254
+ + R + + F + K+ + L+ ++ L DS DD + + L
Sbjct: 872 SEVSLPALRRKTAE-HFHEPPKKK--RSVVLDEILEQLEDSEDDGEAQTL 918
Score = 150 (57.9 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 39/127 (30%), Positives = 69/127 (54%)
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
E G++ DR + A+ + E E+E E+ +E++ G L+IKNL +E
Sbjct: 653 ETPEGEQPTDRAAHDASAKMEEEEEEE-----EEEEEESLP---GCTLFIKNLNFDTTEE 704
Query: 250 KLKELFSEFGTITSCKVMR--DPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
LK +FS+ G + SC + + + +G +S G GFV + PE+A +AL ++ G ++ L
Sbjct: 705 TLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKL 764
Query: 306 YVAVAQR 312
V +++R
Sbjct: 765 EVRISER 771
Score = 140 (54.3 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 44/161 (27%), Positives = 81/161 (50%)
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAV----EALNGKK---FDDREWYVGKAQKKSEREQ 215
++R+ G + FV+F + ++ KA+ E + G+ F +R V KA K+ +
Sbjct: 285 IVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKNGAKP 344
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 274
+G+ +E D L+++NL + +E L++LFS +G ++ D +
Sbjct: 345 -WQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKP 403
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
KG FV F PE A +A AE++G++ + L+V + K+E
Sbjct: 404 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 444
Score = 116 (45.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 37/131 (28%), Positives = 61/131 (46%)
Query: 105 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 164
L N + + G L + E E + +FV+NL ++++EDL+K+F YG ++
Sbjct: 338 LKNGAKPWQGRTLGEHEEEEDLADS--GRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYP 395
Query: 165 RDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
D K K F FV F + A KA ++G+ F R +V + K E ++
Sbjct: 396 IDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDANAPESS 455
Query: 224 AMK---ETVDK 231
+ K E+ DK
Sbjct: 456 SYKKKKESKDK 466
Score = 110 (43.8 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+ +KNL + + F++FG + C + G+ + FGF+ F+++E AQ A++ N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 103 GMLINDKQVFV 113
I+ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 106 (42.4 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ + VKNL +E +++F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 192 LNGKKFDD 199
N K F D
Sbjct: 62 FN-KSFID 68
Score = 85 (35.0 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 30/140 (21%), Positives = 62/140 (44%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+G +F++NL + + L FS +G + D + + KGF FV F E A A
Sbjct: 362 SGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 421
Query: 99 DKLNGMLINDKQVFV-GHFLRKQERETV-AIKTKFNNVFVKNLDE--STTDEDLKKIFGE 154
+++G + + + V ++K+ E A ++ ++ D+ S++ + +F
Sbjct: 422 AEVDGQVFQGRMLHVLPSTIKKEASEDANAPESSSYKKKKESKDKANSSSSHNWNTLFMG 481
Query: 155 YGTITSAVVMRDGDGKSKCF 174
+ A+ + KS+ F
Sbjct: 482 PNAVADAIAQKYSATKSQVF 501
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 201 (75.8 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 46/172 (26%), Positives = 93/172 (54%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 102 NGMLINDKQVFVGHFLRKQERETV----AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYG 156
N +++ + + VG + + + A + + FN ++V ++ + +D+D+K +F +G
Sbjct: 191 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 250
Query: 157 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
I S + RD GK K +GF+ +E A + AV ++N + VGKA
Sbjct: 251 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 166 (63.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 47/180 (26%), Positives = 87/180 (48%)
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 178
Q + +AI + V+V ++ ++ +++ F +G I S + D K K F FV
Sbjct: 120 QRQRALAIMCR---VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE 176
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-L 237
+E + A A+E +N R VG R + GQ + + + ++ + N +
Sbjct: 177 YEVPEAAQLALEQMNSVMLGGRNIKVG-------RPSNI-GQAQPIIDQLAEEARAFNRI 228
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMN 296
Y+ ++ + D+ +K +F FG I SC + RDP+ G KG GF+ + + + A++ MN
Sbjct: 229 YVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 288
Score = 65 (27.9 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 27/125 (21%), Positives = 55/125 (44%)
Query: 211 SEREQ-ELKGQFEQ--AMKETVDKFQGLNLYIKNLGD--SIDDEKLKELFSE---FGTIT 262
SE+E + G + M++ + K + + ++N+ D IDD+ E+ E FG +
Sbjct: 435 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN 494
Query: 263 SCKVMRDPSGISKGSG-----FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ ++ G + + FV FS E +A+ +NG+ + + V ++
Sbjct: 495 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 554
Query: 318 ARLQA 322
+ L A
Sbjct: 555 SDLSA 559
Score = 42 (19.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 465 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
IP SVG PI A L P++++ E L+P E+ E
Sbjct: 390 IPVTIPSVGVVNPILASPPTLGLLEPKKEKE--EEELFPESERPE 432
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 201 (75.8 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 46/172 (26%), Positives = 93/172 (54%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++
Sbjct: 132 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 191
Query: 102 NGMLINDKQVFVGHFLRKQERETV----AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYG 156
N +++ + + VG + + + A + + FN ++V ++ + +D+D+K +F +G
Sbjct: 192 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 251
Query: 157 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
I S + RD GK K +GF+ +E A + AV ++N + VGKA
Sbjct: 252 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 303
Score = 166 (63.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 47/180 (26%), Positives = 87/180 (48%)
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 178
Q + +AI + V+V ++ ++ +++ F +G I S + D K K F FV
Sbjct: 121 QRQRALAIMCR---VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE 177
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-L 237
+E + A A+E +N R VG R + GQ + + + ++ + N +
Sbjct: 178 YEVPEAAQLALEQMNSVMLGGRNIKVG-------RPSNI-GQAQPIIDQLAEEARAFNRI 229
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMN 296
Y+ ++ + D+ +K +F FG I SC + RDP+ G KG GF+ + + + A++ MN
Sbjct: 230 YVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 289
Score = 65 (27.9 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 27/125 (21%), Positives = 55/125 (44%)
Query: 211 SEREQ-ELKGQFEQ--AMKETVDKFQGLNLYIKNLGD--SIDDEKLKELFSE---FGTIT 262
SE+E + G + M++ + K + + ++N+ D IDD+ E+ E FG +
Sbjct: 436 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN 495
Query: 263 SCKVMRDPSGISKGSG-----FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ ++ G + + FV FS E +A+ +NG+ + + V ++
Sbjct: 496 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 555
Query: 318 ARLQA 322
+ L A
Sbjct: 556 SDLSA 560
Score = 42 (19.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 465 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
IP SVG PI A L P++++ E L+P E+ E
Sbjct: 391 IPVTIPSVGVVNPILASPPTLGLLEPKKEKE--EEELFPESERPE 433
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 197 (74.4 bits), Expect = 6.5e-15, Sum P(3) = 6.5e-15
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 253 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 311 QRKEERRAR 319
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 193 (73.0 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 152 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 210 KSER 213
K +
Sbjct: 180 KDSK 183
Score = 174 (66.3 bits), Expect = 3.7e-12, Sum P(3) = 3.7e-12
Identities = 41/115 (35%), Positives = 64/115 (55%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 70 C-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +K +
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 59 (25.8 bits), Expect = 6.5e-15, Sum P(3) = 6.5e-15
Identities = 24/64 (37%), Positives = 28/64 (43%)
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA---SVG 473
Q P P P +PPRG + P+G M P G +P P GAG PR G
Sbjct: 327 QMPPP--PMGVPPRG-PFGPPMGPPMH--PGMRGPPPPMPPP-GYGAGPPRPPPFGFQRG 380
Query: 474 QPMP 477
PMP
Sbjct: 381 PPMP 384
Score = 41 (19.5 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 17/55 (30%), Positives = 20/55 (36%)
Query: 428 PPRGHAYRYPLGRN---MQDFPFD-MGAGSMLPVPVDM-GAGIPRRDASVGQPMP 477
PP GH P G + M P G M+P P G+ PR P P
Sbjct: 277 PPPGHPPFPPAGMHPPGMPHMPMPPTGPPGMVPPPPGPPGSNQPRAPPPPQMPPP 331
Score = 39 (18.8 bits), Expect = 6.5e-15, Sum P(3) = 6.5e-15
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 377 VPGMRPAGA--PMP 388
+PGM P GA P+P
Sbjct: 234 IPGMPPPGAFPPVP 247
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 203 (76.5 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSS 63
S A AL V+ F L NK I+I ++D K G N+FI NLD +D + LHDTFS
Sbjct: 65 SDAEYALKVMKFVRLFNKEIKIKKENKD----KVDIGANLFIGNLDADVDERILHDTFSR 120
Query: 64 FGNIL-SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
FG I+ + K+ D +G SKGF F+ F++ E++ AI+ +N + +K + V + +K
Sbjct: 121 FGTIIFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSN 180
Query: 123 E 123
E
Sbjct: 181 E 181
Score = 177 (67.4 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 47/175 (26%), Positives = 90/175 (51%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+ I++LD + L + F ++ I D + Q G +V+F++ A+ A+ +
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT-S 160
+ + +K++ + +K+ ++ V I N+F+ NLD + L F +GTI +
Sbjct: 75 KFVRLFNKEIKI----KKENKDKVDIGA---NLFIGNLDADVDERILHDTFSRFGTIIFT 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
VMRD +G SK F F+NF++ + + A+EA+N + ++ V A+KK E+
Sbjct: 128 PKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNER 182
Score = 175 (66.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 226 KETVDKFQ-GLNLYIKNLGDSIDDEKLKELFSEFGTIT-SCKVMRDPSGISKGSGFVAFS 283
KE DK G NL+I NL +D+ L + FS FGTI + KVMRD +G+SKG F+ F
Sbjct: 88 KENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFD 147
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314
+ E + A+ MN + + +KP+ V A++K+
Sbjct: 148 SFEASDAAIEAMNSQFLCNKPISVTYARKKD 178
Score = 52 (23.4 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 417 QQPLPI---MPHQMPPRGHAYRYP---LGRNMQDF-PFDMGAGSMLPVP 458
Q P+P +PHQ+ P H + P + F P M G M P P
Sbjct: 308 QHPIPHPHPLPHQLRPHPHPHHPPPPPFNPMLMQFNPMMMPFGGMPPPP 356
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 197 (74.4 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 49/178 (27%), Positives = 89/178 (50%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGN-ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+++ NL KS + + + FS GN + + KI D + + F++++ E A A++ L
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTL 140
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
NG L++D ++ V + T+ N+FV +L DE L+ F ++ ++
Sbjct: 141 NGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLK 200
Query: 160 SAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
A VM D +S+ +GFV F N DA A++ +NG+ R A K +++Q+
Sbjct: 201 QAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQQQQ 258
Score = 169 (64.5 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 55/233 (23%), Positives = 109/233 (46%)
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDE 146
Q ++ ES++N + D + V K+ V+ K ++V NL +S ++E
Sbjct: 38 QQQSTESSENESQQAQQPSSQDDEKQVNAASAKEGGREVSNKI----LYVGNLPKSASEE 93
Query: 147 DLKKIFGEYGTITSAV-VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 205
++++F G + ++ D + + F+ ++ + A A+ LNG+ DD E V
Sbjct: 94 TIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVN 153
Query: 206 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 265
A + + + G +E + N+++ +L ++DE L+ FS+F ++
Sbjct: 154 WAFQSAA----IAGNPNNT-EEPL-----FNIFVGDLSPEVNDEGLRNAFSKFESLKQAH 203
Query: 266 VMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
VM D + S+G GFV F +A AL MNG+ + + + A K++++
Sbjct: 204 VMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQQ 256
Score = 112 (44.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 29/124 (23%), Positives = 63/124 (50%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG------NIFIKNLDKSIDHKALHDT 60
A AL+ LN +++ I++ ++ + +I + NIF+ +L ++ + L +
Sbjct: 133 ADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNA 192
Query: 61 FSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
FS F ++ + D + +S+G+GFV F N+ A+ A+ +NG + + + K
Sbjct: 193 FSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHK 252
Query: 120 QERE 123
Q+++
Sbjct: 253 QQQQ 256
Score = 67 (28.6 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
+Y+ N+ ++L L FG I K P +G FV + T E A+ A+ ++
Sbjct: 414 VYLGNIAHFTQQQELIPLLQNFGFIVDFKF--HPE---RGCAFVKYDTHERAALAIIQLA 468
Query: 297 GKMIVSKPL 305
G + +PL
Sbjct: 469 GFNLNGRPL 477
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 176 (67.0 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 57/196 (29%), Positives = 86/196 (43%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK +F E+G I V++D G K F+ + D A KA AL
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K R ++K + E D+ L++ LG +E ++
Sbjct: 108 HEQK----------TLPGMNRPIQVKPAASEGRGE--DR----KLFVGMLGKQQGEEDVR 151
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
LF FG I C V+R P G SKG FV F + EA A+ ++G + S L V +
Sbjct: 152 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKL 211
Query: 310 AQRKEERRARLQAQFS 325
A ER R Q +
Sbjct: 212 ADTDRERALRRMQQMA 227
Score = 141 (54.7 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 39/156 (25%), Positives = 75/156 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + +D + L F FG I + D +G KG F+ + ++SA A L
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 102 NGMLINDKQVFVGHFLRKQERETVAI-KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + +ED++++F +G I
Sbjct: 108 H-----EQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEE 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F + +A A+++L+G +
Sbjct: 163 CTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSR 198
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L TF FG ++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 398 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 457
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 458 MNGFQIGMKRLKV 470
Score = 126 (49.4 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L + F FG + S KV D + SK GFV+F P A A
Sbjct: 395 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 454
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 455 IQAMNGFQIGMKRLKVQLKRPKDANR 480
Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 398 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 457
Query: 192 LNG 194
+NG
Sbjct: 458 MNG 460
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 176 (67.0 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 57/196 (29%), Positives = 86/196 (43%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK +F E+G I V++D G K F+ + D A KA AL
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K R ++K + E D+ L++ LG +E ++
Sbjct: 108 HEQK----------TLPGMNRPIQVKPAASEGRGE--DR----KLFVGMLGKQQGEEDVR 151
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
LF FG I C V+R P G SKG FV F + EA A+ ++G + S L V +
Sbjct: 152 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKL 211
Query: 310 AQRKEERRARLQAQFS 325
A ER R Q +
Sbjct: 212 ADTDRERALRRMQQMA 227
Score = 141 (54.7 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 39/156 (25%), Positives = 75/156 (48%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + +D + L F FG I + D +G KG F+ + ++SA A L
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 102 NGMLINDKQVFVGHFLRKQERETVAI-KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + +ED++++F +G I
Sbjct: 108 H-----EQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEE 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F + +A A+++L+G +
Sbjct: 163 CTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSR 198
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L TF FG ++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 398 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 457
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 458 MNGFQIGMKRLKV 470
Score = 126 (49.4 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L + F FG + S KV D + SK GFV+F P A A
Sbjct: 395 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 454
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 455 IQAMNGFQIGMKRLKVQLKRPKDANR 480
Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 398 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 457
Query: 192 LNG 194
+NG
Sbjct: 458 MNG 460
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 174 (66.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 57/196 (29%), Positives = 86/196 (43%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK +F E+G I V++D G K F+ + D A KA AL
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K R ++K + E D+ L++ LG +E ++
Sbjct: 108 HEQK----------TLPGMNRPIQVKPAASEGRGE--DR----KLFVGMLGKQQGEEDVR 151
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
LF FG I C V+R P G SKG FV F + EA A+ ++G + S L V +
Sbjct: 152 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKL 211
Query: 310 AQRKEERRARLQAQFS 325
A ER R Q +
Sbjct: 212 ADTDRERALRRMQQMA 227
Score = 140 (54.3 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 39/156 (25%), Positives = 74/156 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + +D + L F FG I + D +G KG F+ + ++SA A L
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 102 NGMLINDKQVFVGHFLRKQERETVAI-KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + +ED++++F +G I
Sbjct: 108 H-----EQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEE 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F + +A A++ L+G +
Sbjct: 163 CTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSR 198
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L TF FG ++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 376 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 435
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 436 MNGFQIGMKRLKV 448
Score = 126 (49.4 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L + F FG + S KV D + SK GFV+F P A A
Sbjct: 373 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 432
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 433 IQAMNGFQIGMKRLKVQLKRPKDANR 458
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 376 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 435
Query: 192 LNG 194
+NG
Sbjct: 436 MNG 438
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 174 (66.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 57/196 (29%), Positives = 86/196 (43%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+FV + ++DLK +F E+G I V++D G K F+ + D A KA AL
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ +K R ++K + E D+ L++ LG +E ++
Sbjct: 108 HEQK----------TLPGMNRPIQVKPAASEGRGE--DR----KLFVGMLGKQQGEEDVR 151
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 309
LF FG I C V+R P G SKG FV F + EA A+ ++G + S L V +
Sbjct: 152 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKL 211
Query: 310 AQRKEERRARLQAQFS 325
A ER R Q +
Sbjct: 212 ADTDRERALRRMQQMA 227
Score = 140 (54.3 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 39/156 (25%), Positives = 74/156 (47%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+F+ + + +D + L F FG I + D +G KG F+ + ++SA A L
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 102 NGMLINDKQVFVGHFLRKQERETVAI-KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ +++ G Q + + + + +FV L + +ED++++F +G I
Sbjct: 108 H-----EQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEE 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
V+R DG SK FV F + +A A++ L+G +
Sbjct: 163 CTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSR 198
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+FI +L + L TF FG ++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 376 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 435
Query: 101 LNGMLINDKQVFV 113
+NG I K++ V
Sbjct: 436 MNGFQIGMKRLKV 448
Score = 126 (49.4 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 291
+G NL+I +L D +L + F FG + S KV D + SK GFV+F P A A
Sbjct: 373 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 432
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERR 317
+ MNG I K L V + + K+ R
Sbjct: 433 IQAMNGFQIGMKRLKVQLKRPKDANR 458
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+F+ +L + D +L + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 376 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 435
Query: 192 LNG 194
+NG
Sbjct: 436 MNG 438
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 213 (80.0 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 53/164 (32%), Positives = 91/164 (55%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 90
DP R S T N+ + L + + + L+ F + G I +C+I D +G S G+ FV F +
Sbjct: 119 DP--RASNT-NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTS 175
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ +Q AI LNG+ + +K++ V + + E++ K N++V NL + TD+ L
Sbjct: 176 EMDSQRAIKVLNGITVRNKRLKVSY--ARPGGESI----KDTNLYVTNLPRTITDDQLDT 229
Query: 151 IFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 193
IFG+YG+I ++RD G+ + FV + ++A +A+ ALN
Sbjct: 230 IFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
Score = 134 (52.2 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RA+ VLN + NK +++ Y+ P N+++ NL ++I L F +G+I+
Sbjct: 181 RAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV 238
Query: 69 SCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGML 105
I D +G+ +G FV++ +E AQ AI LN ++
Sbjct: 239 QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 276
Score = 131 (51.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-S 271
R + LK + + E++ + NLY+ NL +I D++L +F ++G+I ++RD +
Sbjct: 192 RNKRLKVSYARPGGESI---KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 248
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAVAQRKEERRARLQAQFSQM 327
G +G FV ++ EEA A++ +N + S+PL V +A+ E +A+ SQM
Sbjct: 249 GRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE--EHGKAKAAHFMSQM 304
Score = 118 (46.6 bits), Expect = 0.00049, P = 0.00049
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
NL + L + D +L LF G I +C++MRD +G S G FV F++ ++ RA+
Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185
Query: 295 MNGKMIVSKPLYVAVAQ 311
+NG + +K L V+ A+
Sbjct: 186 LNGITVRNKRLKVSYAR 202
Score = 96 (38.9 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
N+ V L + TD +L +F G I + +MRD G S + FV+F + D+ +A++
Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185
Query: 192 LNGKKFDDREWYVGKAQKKSE 212
LNG ++ V A+ E
Sbjct: 186 LNGITVRNKRLKVSYARPGGE 206
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 215 (80.7 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 58/177 (32%), Positives = 87/177 (49%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+FV L + D LK+ F G + A V+M GKS+ +G+V+FE+ A KA+E +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 193 NGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
GK+ D R + GK K Q+ + D L+I NL + +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAK-QYGDSQSPPSD-----TLFIGNLSFNANR 283
Query: 249 EKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+ L +F E+G + SC+V P KG G+V FS+ +EA AL MNG+ I +P
Sbjct: 284 DNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRP 340
Score = 190 (71.9 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 46/180 (25%), Positives = 88/180 (48%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENK 91
P+ +F+ L +ID L F G ++ ++ + +G+S+G+G+V FE+K
Sbjct: 160 PAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESK 219
Query: 92 ESAQNAIDKLNGMLINDKQVFVG------HFLRKQERETVAI----KTKFNNVFVKNLDE 141
+A+ A++++ G I+ + + + H + + +F+ NL
Sbjct: 220 SAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSF 279
Query: 142 STTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEALNGKKFDDR 200
+ ++L +FGEYG + S V D + K FG+V F + D+A A+EA+NG+ + R
Sbjct: 280 NANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 34/116 (29%), Positives = 56/116 (48%)
Query: 199 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF 258
D E K +K E ++E +++ K + L++ L +IDD LK F
Sbjct: 133 DSEEEPSKKRKAEESKEEESAPVKKS-KPAASTEEPATLFVGRLSWNIDDAWLKREFEHI 191
Query: 259 GTITSCKV-MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
G + +V M +G S+G G+V F + A +AL EM GK I +P+ + ++ K
Sbjct: 192 GGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
WARNING: HSPs involving 1267 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 575 523 0.00090 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1517
No. of states in DFA: 601 (64 KB)
Total size of DFA: 251 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 50.83u 0.10s 50.93t Elapsed: 00:00:02
Total cpu time: 50.94u 0.11s 51.05t Elapsed: 00:00:03
Start: Tue May 21 07:57:21 2013 End: Tue May 21 07:57:24 2013
WARNINGS ISSUED: 2