BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008162
(575 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/569 (81%), Positives = 512/569 (89%), Gaps = 3/569 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLNN+SIRIMYSHRDPS+RKSGT NIFIKNLDK+IDHKALHDTFSSFG
Sbjct: 89 AARALDVLNFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGL 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SG SKG+GFVQF+N+E+AQNAIDKLNGMLINDKQV+VGHFLRKQ+RE
Sbjct: 149 ILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENAL 208
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNV+VKNL ESTTDE+L FGEYGTITSA++MRD DGKS+CFGFVNFEN DDAA
Sbjct: 209 SKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAA 268
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNGKKFDD+EWYVGKAQKKSEREQELKG+FEQ++KE DK+ GLNLY+KNL D+I
Sbjct: 269 KAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTI 328
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKE+F+++GTITSCKVMRDP+GIS+GSGFVAFSTPEEA+RAL EMNGKM KPLY
Sbjct: 329 SDEKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLY 388
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMRPVA+ PSV PRMP+YPPG GLGQQFLYGQ PPA++PP
Sbjct: 389 VALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPP 448
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGYQQQLVPGMRP G PMP+FFVP+V QGQQGQRP GRRG GPVQQ QQP+P+M Q
Sbjct: 449 QAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQRPVGRRGTGPVQQPQQPMPMMQQQ 508
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GRNMQD P + AG ML VP DMG G+P RDA VGQPMPI AL+TALA
Sbjct: 509 MLPRGRVYRYPPGRNMQDVPLQVAAGGMLSVPYDMG-GLPMRDA-VGQPMPIQALATALA 566
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA PEQQRT+LGE+LYPLV+QLE D+AAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAM
Sbjct: 567 NAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAM 626
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
+VLR+VAQQQ NPADQLASLSLN+NLVS
Sbjct: 627 DVLRNVAQQQT-NPADQLASLSLNDNLVS 654
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD++++ L+D F+ G ++S ++ D + +S G+G+V F N + A A+
Sbjct: 34 TTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARAL 93
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N++ + + + R+ K+ N+F+KNLD++ + L F +G I
Sbjct: 94 DVLNFTPLNNRSIRIMY----SHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLI 149
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D G SK +GFV F+N + A A++ LNG +D++ YVG +K +RE L
Sbjct: 150 LSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENAL- 208
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ KF N+Y+KNL +S DE+L F E+GTITS +MRD G S+ G
Sbjct: 209 ---------SKTKFN--NVYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFG 257
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F P++A++A+ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 258 FVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQ 305
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPE 286
++F +LY+ +L +++D +L +LF++ G + S +V RD + S G G+V FS P+
Sbjct: 28 NANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQ 87
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+A+RAL +N + ++ + + + R R
Sbjct: 88 DAARALDVLNFTPLNNRSIRIMYSHRDPSLR 118
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/570 (82%), Positives = 511/570 (89%), Gaps = 3/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALD+LNFTP NNK IRIMYSHRDPSIRKSGTGNIFIKNLDK+IDHKALHDTFSSFGN
Sbjct: 91 AARALDILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGN 150
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQS+G+GFVQF+N+E+AQNAIDKLNGML+NDKQV+VGHFLRK ER++ +
Sbjct: 151 ILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSAS 210
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNNV+VKNL ESTT+EDLK IFGEYG ITSAV+MRD DGKSKCFGFVNFEN D AA
Sbjct: 211 NK-KFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAA 269
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE+LNGKK DD+EWYVGKAQKKSERE ELK QFEQ+MKE VDK+QG+NLYIKNL DSI
Sbjct: 270 KAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSI 329
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DE LKELFS+FG ITSCKVMRDPSGIS+GSGFVAFSTPEEASRALAEMNGKM+VSKPLY
Sbjct: 330 SDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLY 389
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMRPVAM PSV PRMP+Y PG G+GQQFLYGQ PP +IPP
Sbjct: 390 VALAQRKEERRARLQAQFSQMRPVAMAPSVGPRMPIYSPGAPGMGQQFLYGQGPPTMIPP 449
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQLVPG+RP GAPMPNFFVP+V QGQQGQR GGRRGA PVQQ QQP+P+M Q
Sbjct: 450 QGGFGYQQQLVPGIRPGGAPMPNFFVPMVQQGQQGQRHGGRRGAVPVQQNQQPVPLMHQQ 509
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GRNM D P AG ML VP DMG G+P RDA+ GQP+PITAL+TALA
Sbjct: 510 MLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMG-GMPIRDAAAGQPVPITALATALA 568
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NASPE QRTLLGESLYPLV+QLE ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 569 NASPEHQRTLLGESLYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 628
Query: 547 EVLRSV-AQQQANNPADQLASLSLNENLVS 575
EVLRSV AQQ ANN ADQL SLSLN+ LVS
Sbjct: 629 EVLRSVAAQQHANNTADQLTSLSLNDGLVS 658
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 158/286 (55%), Gaps = 18/286 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ G ++S ++ D + +S G+G+V + + + A A+D
Sbjct: 38 SLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDI 97
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN N+K + + + R+ K+ N+F+KNLD++ + L F +G I S
Sbjct: 98 LNFTPFNNKPIRIMY----SHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILS 153
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+S+ +GFV F+N + A A++ LNG +D++ YVG +K ER+ +
Sbjct: 154 CKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKK 213
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
F N+Y+KNL +S +E LK +F E+G ITS +MRD G SK GFV
Sbjct: 214 FN-------------NVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFV 260
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F + A++A+ +NGK I K YV AQ+K ER L++QF Q
Sbjct: 261 NFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQ 306
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +LD + TD L +F + G + S V RD +S +G+VN+ + DAA+A++
Sbjct: 38 SLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDI 97
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN F+++ + + + + G N++IKNL +ID + L
Sbjct: 98 LNFTPFNNKPIRIMYSHRDPSIRKSGTG----------------NIFIKNLDKTIDHKAL 141
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D SG S+G GFV F E A A+ ++NG ++ K +YV
Sbjct: 142 HDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFL 201
Query: 312 RKEERRARLQAQFSQM 327
RK ER + +F+ +
Sbjct: 202 RKHERDSASNKKFNNV 217
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/570 (80%), Positives = 504/570 (88%), Gaps = 2/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALD+LNFTPLN K IRIMYS RDPSIR+SGT NIFIKNLDK+ID+KAL+DTFS+FG
Sbjct: 86 AARALDMLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGA 145
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SGQSKG+GFVQF+N+ESA+NA DKLNGML+NDKQV+VG F+RKQERE+
Sbjct: 146 ILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESAT 205
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNV+VKNL ESTTDEDLK IFGEYG ITSAVVM+DGDGKSKCFGFVNFENADDAA
Sbjct: 206 NKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAA 265
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
++VEALNGKKFDD+EWYVGKAQKK+ERE ELKG+FEQ++KE VDKFQGLNLY+KNL DSI
Sbjct: 266 RSVEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSI 325
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KL+ELFSEFGTITSCKVMRDP+GIS+GSGFVAFST EEASRALA+MNGKM+ SKPLY
Sbjct: 326 ADDKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLY 385
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RRARLQAQFSQMRP AM PSV PRM MYPPG GLGQQ YGQ PPA+IPP
Sbjct: 386 VALAQRKEDRRARLQAQFSQMRPAAMAPSVGPRMSMYPPGAPGLGQQLFYGQGPPALIPP 445
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMPH 425
Q GFGYQ QLVPGMRP APMPNFFVP+V GQ QRPGGRR G GPVQQTQQPLP+M
Sbjct: 446 QPGFGYQHQLVPGMRPGAAPMPNFFVPMVQPGQPNQRPGGRRSGTGPVQQTQQPLPLMQQ 505
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
QM PRG YRYP GRNM D P G ML P DM AG+P RDA+V QPMPI AL+TAL
Sbjct: 506 QMLPRGRVYRYPPGRNMADVPIPGVPGGMLSAPYDM-AGMPFRDAAVSQPMPIGALATAL 564
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA P+QQRTLLGE+LYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 565 ANAPPDQQRTLLGENLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 624
Query: 546 MEVLRSVAQQQANNPADQLASLSLNENLVS 575
MEVLR+VAQQQANNP D++ASLSLN+ L S
Sbjct: 625 MEVLRNVAQQQANNPTDRMASLSLNDTLTS 654
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 157/286 (54%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +L+ ++ L+D F G ++S ++ D S + S G+G+V + N + A A+D
Sbjct: 33 SLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDM 92
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + + R+ ++ N+F+KNLD++ ++ L F +G I S
Sbjct: 93 LNFTPLNGKPIRIMYSF----RDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILS 148
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D G+SK +GFV F+N + A A + LNG +D++ YVG +K ERE
Sbjct: 149 CKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERE------ 202
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+K + N+Y+KNL +S DE LK +F E+G ITS VM+D G SK GFV
Sbjct: 203 ------SATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFV 256
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F ++A+R++ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 257 NFENADDAARSVEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQ 302
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEAS 289
+F +LY+ +L ++ D L +LF + G + S +V RD S S G G+V + ++A+
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAA 87
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
RAL +N + KP+ + + R R
Sbjct: 88 RALDMLNFTPLNGKPIRIMYSFRDPSIR 115
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/569 (83%), Positives = 519/569 (91%), Gaps = 2/569 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALD+LNFTPLN K IRIMYSHRDPSIRKSGT NIFIKNLDKSID+KALHDTFS+FGN
Sbjct: 72 AARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGN 131
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SGQSKG+GFVQF+N+ESAQNAIDKLNGMLINDKQV+VG FLRKQERET
Sbjct: 132 ILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETAL 191
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNV+VKNL ESTT+EDLK IFGE+G ITS VVMRDGDGKSKCFGFVNFENADDAA
Sbjct: 192 NKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAA 251
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFD++EWYVGKAQKK ERE ELKG+FEQ+MKE VDKFQG+NLYIKNL DSI
Sbjct: 252 EAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSI 311
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KLKELFSEFGTITSCKVMRDPSGIS+GSGFVAFST EEASRAL EMNGKM+VSKPLY
Sbjct: 312 GDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLY 371
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMRPV+M PSV PRMPMYPPG GLGQQ YGQ PPAIIPP
Sbjct: 372 VALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPP 431
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQRPGGRRGAGPVQQ QQP+P+M Q
Sbjct: 432 QAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQ 491
Query: 427 MPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
M PR G YRYP GRNM D P AG ML +P DMG G+P RDA++GQPMPI+AL++AL
Sbjct: 492 MLPRGGRVYRYPPGRNMPDVPMPGVAGGMLSIPYDMG-GVPLRDAAIGQPMPISALASAL 550
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA+P+QQRT+LGESLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEA
Sbjct: 551 ANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEA 610
Query: 546 MEVLRSVAQQQANNPADQLASLSLNENLV 574
M+VLR+VAQQQAN+P +QLASLSLN++LV
Sbjct: 611 MDVLRNVAQQQANSPTEQLASLSLNDSLV 639
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 161/290 (55%), Gaps = 17/290 (5%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQN 96
+ T ++++ +LD +I L+D F G +LS ++ D S + S G+G+V + N + A
Sbjct: 15 ANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAAR 74
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+D LN +N K + + + R+ K+ N+F+KNLD+S ++ L F +G
Sbjct: 75 ALDLLNFTPLNGKPIRIMY----SHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFG 130
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
I S + D G+SK +GFV F+N + A A++ LNG +D++ YVG+ +K ERE
Sbjct: 131 NILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETA 190
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L +K + N+Y+KNL +S +E LK +F EFG ITS VMRD G SK
Sbjct: 191 L------------NKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKC 238
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV F ++A+ A+ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 239 FGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQ 288
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/570 (83%), Positives = 514/570 (90%), Gaps = 4/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLNNK IRIMYSHRDPSIRKSG NIFIKNLDK IDHKALHDTFSSFGN
Sbjct: 66 AARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGN 125
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQF+++E+AQNAIDKLNGML+NDKQV+VGHFLRKQ+R+
Sbjct: 126 ILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGAL 185
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KFNNVFVKNL ESTTDE+LK IF E+G ITSAVVMRD DGKSKCFGFVNFE+ADDAA
Sbjct: 186 YSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAA 245
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALNGKK D EWYVGKAQKKSERE ELKG+FEQ+MKETVDKFQGLNLYIKNL DSI
Sbjct: 246 KAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSI 305
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+DEKLKELFS+FG ITSCKVMRDPSGIS+GSGFVAFSTPEEASRALAEMNGKM++SKPLY
Sbjct: 306 NDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLY 365
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMRPV M PSV RMPMYPPG G+GQQFLYGQ PPA++PP
Sbjct: 366 VALAQRKEERRARLQAQFSQMRPVTMAPSVASRMPMYPPGAPGMGQQFLYGQGPPAMMPP 425
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQRPGGRRG GPVQQTQQP+P+M Q
Sbjct: 426 QAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGGGPVQQTQQPVPLMQQQ 485
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GRNM D P AG ML VP DMG G+P RDA+ QPMPITAL+TALA
Sbjct: 486 MLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMG-GMPIRDAA--QPMPITALATALA 542
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGESLYP+V+QLE D+AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 543 NATPEQQRTMLGESLYPIVDQLEHDSAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 602
Query: 547 EVLRSV-AQQQANNPADQLASLSLNENLVS 575
EVLR+V AQQQ NN ADQL SLSLN+NLVS
Sbjct: 603 EVLRTVAAQQQINNQADQLGSLSLNDNLVS 632
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 161/286 (56%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ G ++S ++ D S + S G+G+V + N + A A+D
Sbjct: 13 SLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDV 72
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N+K + + + R+ K+ N+F+KNLD+ + L F +G I S
Sbjct: 73 LNFTPLNNKPIRIMY----SHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILS 128
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV F++ + A A++ LNG +D++ YVG +K +R+ L
Sbjct: 129 CKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGALYSI 188
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+++KNL +S DE+LK +F+E G ITS VMRD G SK GFV
Sbjct: 189 ----------KFN--NVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F + ++A++A+ +NGK I + YV AQ+K ER L+ +F Q
Sbjct: 237 NFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQ 282
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADD 184
AI+ +++V +LD + TD L +F + G + S V RD +S +G+VN+ N D
Sbjct: 6 AIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQD 65
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA+A++ LN +++ + + + ++ K N++IKNL
Sbjct: 66 AARALDVLNFTPLNNKPIRIMYSHRDP----------------SIRKSGMANIFIKNLDK 109
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
ID + L + FS FG I SCKV D SG SKG GFV F + E A A+ ++NG ++ K
Sbjct: 110 GIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQ 169
Query: 305 LYVAVAQRKEERRARL 320
+YV RK++R L
Sbjct: 170 VYVGHFLRKQDRDGAL 185
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/569 (81%), Positives = 513/569 (90%), Gaps = 3/569 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLNN+ IRIMYSHRDPS+RKSGT NIFIKNLDK+IDHKALHDTFSSFG
Sbjct: 87 AARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGL 146
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SG SKG+GFVQF+++ESAQNAIDKLNGMLINDKQV+VGHFLRKQ+RE
Sbjct: 147 ILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENAL 206
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNV+VKNL ESTTDE+L K FGEYGTITSAV+MRD DGKS+CFGFVNFEN DDAA
Sbjct: 207 SKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAA 266
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNGKK DD+EWYVGKAQKKSEREQELKG+FEQ++KE+ DK+QG+NLY+KNL D+I
Sbjct: 267 KAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTI 326
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKE+F+E+GTITSCKVMRDP+GI +GSGFVAFSTPEEASRAL EMNGKMI KPLY
Sbjct: 327 SDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLY 386
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RRARLQAQFSQMRPVA+ PSV PRMP+YPPG GLGQQFLYGQ PPA++PP
Sbjct: 387 VALAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPP 446
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGYQQQLVPGMRP G PMP+FFVP+V QGQQGQRPGGRRG GPVQQ QQP+P+M Q
Sbjct: 447 QAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQRPGGRRGTGPVQQPQQPMPMMQQQ 506
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GRNMQD P AG M+ VP DMG G+P RDA VGQPMPI AL+TALA
Sbjct: 507 MLPRGRVYRYPPGRNMQDVPLQGVAGGMMSVPYDMG-GLPIRDA-VGQPMPIQALATALA 564
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA PEQQRT+LGE+LYPLV+QLE DAAAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAM
Sbjct: 565 NAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAM 624
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
+VLR+VAQQQ NPADQLASLSLN+NLVS
Sbjct: 625 DVLRNVAQQQT-NPADQLASLSLNDNLVS 652
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 164/288 (56%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +L+++++ L+D F+ ++S ++ D + +S G+G+V F N + A A+
Sbjct: 32 TTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARAL 91
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N++ + + + R+ K+ N+F+KNLD++ + L F +G I
Sbjct: 92 DVLNFTPLNNRPIRIMY----SHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLI 147
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D G SK +GFV F++ + A A++ LNG +D++ YVG +K +RE L
Sbjct: 148 LSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENAL- 206
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ KF N+Y+KNL +S DE+L + F E+GTITS +MRD G S+ G
Sbjct: 207 ---------SKTKFN--NVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFG 255
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F P++A++A+ +NGK + K YV AQ+K ER L+ +F Q
Sbjct: 256 FVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQ 303
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
++F +LY+ +L +++D +L +LF++ + S +V RD + S G G+V FS P++A
Sbjct: 28 NQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDA 87
Query: 289 SRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+RAL +N + ++P+ + + R R
Sbjct: 88 ARALDVLNFTPLNNRPIRIMYSHRDPSLR 116
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/569 (79%), Positives = 503/569 (88%), Gaps = 2/569 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLNN+ IRIMYSHRDPSIRKSG GNIFIKNLD++IDHKALHDTFS+FGN
Sbjct: 85 AARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGN 144
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQF+N+ESAQ AI+KLNGML+NDKQV+VG FLRKQERE+ A
Sbjct: 145 ILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAA 204
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNNVFVKNL ESTTD++LK FGE+GTITSAVVMRDGDGKSKCFGFVNFENADDAA
Sbjct: 205 DKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAA 264
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGK FDD+EWYVGKAQKKSERE ELK +FEQ+MKE DK+QG NLY+KNL DSI
Sbjct: 265 RAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSI 324
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKELFS FGTITSCKVMRDP+G+S+GSGFVAFSTPEEASRAL EMNGKM+VSKPLY
Sbjct: 325 GDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 384
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
V +AQRKE+RRARLQAQF+QMRPV M PSV PR+PMYPPG G+GQQ Y Q PPAIIP
Sbjct: 385 VTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQLFYSQGPPAIIPS 444
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQL+PGMRP AP+PNFFVP+V QGQQGQRPGGRR VQQ+QQP+P+MP Q
Sbjct: 445 QPGFGYQQQLMPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRPGA-VQQSQQPVPMMPQQ 503
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GR + D P AG M VP D+G G+P RDAS+ Q +P+ AL+TALA
Sbjct: 504 MLPRGRVYRYPPGRGIPDVPIPGVAGGMFSVPYDVG-GMPLRDASISQQIPVGALATALA 562
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NASPEQQRT+LGE+LYPLVEQLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 563 NASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 622
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
+VLR+VAQQQA ADQLASLSLN+NLVS
Sbjct: 623 DVLRNVAQQQAGGTADQLASLSLNDNLVS 651
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD ++ L+D F+ G ++S ++ D S +S G+G+V F N + A A+
Sbjct: 30 TTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARAL 89
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N++ + + + R+ K+ N+F+KNLD + + L F +G I
Sbjct: 90 DVLNFTPLNNRPIRIMY----SHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNI 145
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK +GFV F+N + A KA+E LNG +D++ YVG +K ERE
Sbjct: 146 LSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERE---- 201
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
DK + N+++KNL +S D++LK F EFGTITS VMRD G SK G
Sbjct: 202 --------SAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFG 253
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F ++A+RA+ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 254 FVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQ 301
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 289
+F +LY+ +L ++ D +L +LF++ G + S +V RD S S G G+V FS P++A+
Sbjct: 27 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAA 86
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
RAL +N + ++P+ + + R R
Sbjct: 87 RALDVLNFTPLNNRPIRIMYSHRDPSIR 114
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/567 (79%), Positives = 500/567 (88%), Gaps = 2/567 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLNN+ IRIMYSHRDPSIRKSG GNIFIKNLD++IDHKALHDTFS+FGN
Sbjct: 82 AARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGN 141
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQF+N+ESAQ AI+KLNGML+NDKQV+VG FLRKQERE+ A
Sbjct: 142 ILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTA 201
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNNVFVKNL ESTTD++LK +FGE+GTITSAVVMRDGDGKSKCFGFVNFENADDAA
Sbjct: 202 DKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAA 261
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFDD+EWYVGKAQKKSERE ELK +FEQ+MKE DK+QG NLY+KNL DS+
Sbjct: 262 RAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSL 321
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KLKELFS FGTITSCKVMRDP+GIS+GSGFVAFSTP+EASRAL EMNGKM+VSKPLY
Sbjct: 322 GDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLY 381
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
V +AQRKE+RRARLQAQF+QMRPV M PSV PR+PMYPPG G+GQQ Y Q PPAIIP
Sbjct: 382 VTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYAQGPPAIIPS 441
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQLVPGMRP AP+PNFFVP+V QGQQGQR G R G VQQ+QQP+P+MP Q
Sbjct: 442 QPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQR-PGGRRTGAVQQSQQPVPMMPQQ 500
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GR M D AG M VP D+G G+P RDAS+ Q +P+ AL+TALA
Sbjct: 501 MLPRGRVYRYPPGRGMPDVSMPGVAGGMFSVPYDVG-GMPLRDASISQQIPVGALATALA 559
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NASPEQQRT+LGE+LYPLVEQLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 560 NASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
Query: 547 EVLRSVAQQQANNPADQLASLSLNENL 573
+VLR+VAQQQA ADQLASLSLN+NL
Sbjct: 620 DVLRNVAQQQAGGTADQLASLSLNDNL 646
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD ++ L+D F+ G ++S ++ D S +S G+G+V F N + A A+
Sbjct: 27 TTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARAL 86
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N++ + + + R+ K+ N+F+KNLD + + L F +G I
Sbjct: 87 DVLNFTPLNNRPIRIMY----SHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNI 142
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK +GFV F+N + A KA+E LNG +D++ YVG +K ERE
Sbjct: 143 LSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERE---- 198
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
T DK + N+++KNL +S D++LK +F EFGTITS VMRD G SK G
Sbjct: 199 --------STADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFG 250
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F ++A+RA+ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 251 FVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQ 298
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 289
+F +LY+ +L ++ D +L +LF++ G + S +V RD S S G G+V FS P++A+
Sbjct: 24 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAA 83
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
RAL +N + ++P+ + + R R
Sbjct: 84 RALDVLNFTPLNNRPIRIMYSHRDPSIR 111
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/570 (83%), Positives = 515/570 (90%), Gaps = 4/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLNNK +RIMYSHRDPSIRKSG NIFIKNLDK+IDHKALHDTFSSFGN
Sbjct: 85 AARALDVLNFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGN 144
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQF+++E+AQNAIDKLNGMLINDKQV+VG+FLRKQER++
Sbjct: 145 ILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSAL 204
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KFNN++VKNL ESTTDEDLK IF E+G ITSAVVMRD DGKSKCFGFVNFEN DDAA
Sbjct: 205 SNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAA 264
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALNGKKFDD+EWYVGKAQKKSERE ELKG+FEQ++ E+V+K+Q +NLYIKNL DS+
Sbjct: 265 KAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSL-ESVEKYQAVNLYIKNLDDSV 323
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+DEKLKELFS+FGTITSCKVM DPSGIS+GSGFVAFSTPEEASRALAE+NGKM+VSKPLY
Sbjct: 324 NDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGKMVVSKPLY 383
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQRKEERRARLQAQFSQMRPVAM PSV PRM MYPPG GLGQQFLYGQ PPA+I P
Sbjct: 384 VAPAQRKEERRARLQAQFSQMRPVAMAPSVAPRMQMYPPGAPGLGQQFLYGQGPPAMI-P 442
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQRPGGRRG GPVQQTQQP+P+M Q
Sbjct: 443 QAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGGGPVQQTQQPVPLMQQQ 502
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GRNM D P AG ML VP DMG +P RDA+ GQPMPITAL+TALA
Sbjct: 503 MLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMGV-MPIRDAAGGQPMPITALATALA 561
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGE LYPLV+QLE D+AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 562 NATPEQQRTMLGEGLYPLVDQLEHDSAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 621
Query: 547 EVLRSV-AQQQANNPADQLASLSLNENLVS 575
EVLR+V AQQQ NNPAD LASLSLNENLVS
Sbjct: 622 EVLRTVAAQQQINNPADHLASLSLNENLVS 651
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 158/286 (55%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ G ++S ++ D S + S G+G+V + N + A A+D
Sbjct: 32 SLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDV 91
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N+K + + + R+ K+ N+F+KNLD++ + L F +G I S
Sbjct: 92 LNFTPLNNKPLRIMY----SHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILS 147
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV F++ + A A++ LNG +D++ YVG +K ER+ L
Sbjct: 148 CKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNI 207
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL +S DE LK +F E G ITS VMRD G SK GFV
Sbjct: 208 ----------KFN--NIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFV 255
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F ++A++A+ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 256 NFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQ 301
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 17/196 (8%)
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADD 184
AI+ +++V +LD + TD L +F + G + S V RD +S +G+VN+ N D
Sbjct: 25 AIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQD 84
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA+A++ LN +++ + + + ++ K N++IKNL
Sbjct: 85 AARALDVLNFTPLNNKPLRIMYSHRDP----------------SIRKSGMANIFIKNLDK 128
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+ID + L + FS FG I SCKV D SG SKG GFV F + E A A+ ++NG +I K
Sbjct: 129 TIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQ 188
Query: 305 LYVAVAQRKEERRARL 320
+YV RK+ER + L
Sbjct: 189 VYVGNFLRKQERDSAL 204
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/569 (80%), Positives = 513/569 (90%), Gaps = 3/569 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RA+++LNFTP+N KSIR+MYSHRDP++RKSG+ NIFIKNLDKSID+KALHDTFSSFGN
Sbjct: 92 ASRAMEMLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGN 151
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD +GQSKG+GFVQ++N+ESAQ AIDKLNGML+NDKQV+VGHFLRKQERE+
Sbjct: 152 ILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTT 211
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TKF NV+VKNL ESTTD++LKK+FGE+G ITSAVVMRD DGKSKCFGF+NFE A+DAA
Sbjct: 212 GMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAA 271
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE+LNGKKFDD+EWYVGKAQKKSEREQELK +FEQ KE VDK+QGLNLY+KNL D+I
Sbjct: 272 KAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTI 331
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLKELFSEFGTITSCKVMRDPSGIS+GSGFVAFST EEASRAL+EMNGKMIVSKPLY
Sbjct: 332 DDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLY 391
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRA+LQAQFSQ+RPVAM PS+ PRMP+YPPG G+GQQ YGQ PPA+IPP
Sbjct: 392 VALAQRKEERRAKLQAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPP 451
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGYQQQLVPGMRP GAPMPNFF+P+V QGQQGQRPGGRRGAGPVQQTQQP+P+M Q
Sbjct: 452 QAGFGYQQQLVPGMRPGGAPMPNFFMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPLMQQQ 511
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GRN + P G ML VP DMG +P RD+++GQPMPI+ L++ALA
Sbjct: 512 MLPRGRMYRYPPGRNGPEGPMPGVPGGMLSVPYDMGGMLP-RDSAMGQPMPISTLASALA 570
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA PEQQRT+LGESLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 571 NAPPEQQRTMLGESLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 630
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
EVLR+V QQ NPADQLASLSLN+NLVS
Sbjct: 631 EVLRNV--QQTTNPADQLASLSLNDNLVS 657
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+ + TD L +F + G + S V RD +S +G+VN+ N +DA++A+E
Sbjct: 39 SLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEM 98
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + V + + T+ K N++IKNL SID++ L
Sbjct: 99 LNFTPVNGKSIRVMYSHRDP----------------TLRKSGSANIFIKNLDKSIDNKAL 142
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCK+ D +G SKG GFV + E A A+ ++NG ++ K +YV
Sbjct: 143 HDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFL 202
Query: 312 RKEERRA 318
RK+ER +
Sbjct: 203 RKQERES 209
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/569 (81%), Positives = 507/569 (89%), Gaps = 21/569 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALD+LNFTPLN K IRIMYSHRDPSIRKSGT NIFIKNLDKSID+KALHDTFS+FGN
Sbjct: 72 AARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGN 131
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SGQSKG+GFVQF+N+ESAQNAIDKLNGMLINDKQV+VG FLRKQERET
Sbjct: 132 ILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETAL 191
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNV+VKNL ESTT+EDLK IFGE+G ITS VVMRDGDGKSKCFGFVNFENADDAA
Sbjct: 192 NKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAA 251
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFD++EWYVGKAQKK ERE ELKG+FEQ+MKE VDKFQG+NLYIKNL DSI
Sbjct: 252 EAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSI 311
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KLKELFSEFGTITSCKVMRDPSGIS+GSGFVAFST EEASRAL EMNGKM+VSKPLY
Sbjct: 312 GDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLY 371
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMRPV+M PSV PRMPMYPPG GLGQQ YGQ PPAIIPP
Sbjct: 372 VALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPP 431
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQRPGGRRGAGPVQQ QQP+P+M Q
Sbjct: 432 QAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQ 491
Query: 427 MPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
M PR G YRYP GRNM D +P DA++GQPMPI+AL++AL
Sbjct: 492 MLPRGGRVYRYPPGRNMPD--------------------VPMPDAAIGQPMPISALASAL 531
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA+P+QQRT+LGESLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEA
Sbjct: 532 ANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEA 591
Query: 546 MEVLRSVAQQQANNPADQLASLSLNENLV 574
M+VLR+VAQQQAN+P +QLASLSLN++LV
Sbjct: 592 MDVLRNVAQQQANSPTEQLASLSLNDSLV 620
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 161/290 (55%), Gaps = 17/290 (5%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQN 96
+ T ++++ +LD +I L+D F G +LS ++ D S + S G+G+V + N + A
Sbjct: 15 ANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAAR 74
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+D LN +N K + + + R+ K+ N+F+KNLD+S ++ L F +G
Sbjct: 75 ALDLLNFTPLNGKPIRIMY----SHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFG 130
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
I S + D G+SK +GFV F+N + A A++ LNG +D++ YVG+ +K ERE
Sbjct: 131 NILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETA 190
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L +K + N+Y+KNL +S +E LK +F EFG ITS VMRD G SK
Sbjct: 191 L------------NKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKC 238
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV F ++A+ A+ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 239 FGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQ 288
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/573 (75%), Positives = 497/573 (86%), Gaps = 11/573 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ AA+A++VLNFTP+N K IRIMYS+RDP+IRKSGTGNI+IKNLDK+ID+KALHDTFS+
Sbjct: 80 VHDAAQAIEVLNFTPVNGKPIRIMYSYRDPTIRKSGTGNIYIKNLDKAIDNKALHDTFSA 139
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG+ILSCK+ATD GQS G+GFVQF+N+ESA+NAIDKLNGML+NDKQV+VG FLRKQERE
Sbjct: 140 FGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERE 199
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ K FNNV+VKNL E+TT+EDLKKIFGEYGTITSAVVMRDG+GKS+CFGFVNFEN D
Sbjct: 200 SAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPD 259
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DAA++VEALNGK FD++EWYVGKAQKKSERE ELKG+FEQ +KETVDKFQGLNLY+KNL
Sbjct: 260 DAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLD 319
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSI D+KLKELFSEFGTITSCKVMRDP+G+S+GSGFVAFST EEASRAL EMNGKM+VSK
Sbjct: 320 DSITDDKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSK 379
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKEERRARLQAQ+SQ+RP AM P + PRMP+YPPG G+G Q YGQ PPAI
Sbjct: 380 PLYVALAQRKEERRARLQAQYSQIRP-AMAPPIGPRMPIYPPGTPGIGHQLFYGQGPPAI 438
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPI 422
+PPQ GFGYQQQLVPGMR PNFFVP+V GQQ QRP GRR GAG V Q QQPLP+
Sbjct: 439 VPPQPGFGYQQQLVPGMR------PNFFVPMVQPGQQAQRPSGRRSGAGAV-QPQQPLPM 491
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
M QM PRG YRYP GR+M D P G MLPVP DMG G+P RD + QP+ AL+
Sbjct: 492 MQPQMLPRGRVYRYPPGRSMPDVPMAGLPGGMLPVPYDMG-GMPFRDGAFSQPVQTGALA 550
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
TALANA PEQQRTLLGE+LYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPE+LKAKV
Sbjct: 551 TALANAMPEQQRTLLGENLYPLVDQLEHENAAKVTGMLLEMDQTEVLHLLESPESLKAKV 610
Query: 543 AEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AEAMEVLR+V QQQ N+P D++A+LSLN++LVS
Sbjct: 611 AEAMEVLRTV-QQQVNSPTDRMATLSLNDSLVS 642
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 17/189 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+++ T+ L +F ++G + S V RD +S +G+VN+ N DAA+A+E
Sbjct: 30 SLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEV 89
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + + T+ K N+YIKNL +ID++ L
Sbjct: 90 LNFTPVNGKPIRIMYSYRDP----------------TIRKSGTGNIYIKNLDKAIDNKAL 133
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG+I SCKV D G S G GFV F E A A+ ++NG ++ K +YV
Sbjct: 134 HDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFL 193
Query: 312 RKEERRARL 320
RK+ER + +
Sbjct: 194 RKQERESAI 202
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEE 287
V++F +LY+ +L ++ + +L +LF++ G + S +V RD S S G G+V ++ +
Sbjct: 23 VNQFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHD 82
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQR 312
A++A+ +N + KP+ + + R
Sbjct: 83 AAQAIEVLNFTPVNGKPIRIMYSYR 107
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/573 (77%), Positives = 502/573 (87%), Gaps = 11/573 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ AA+AL+VLNFTP+N K IRIMYS+RDP+IRKSG GNI+IKNLDK+ID+KALHDTFS+
Sbjct: 80 VHDAAQALEVLNFTPVNGKPIRIMYSYRDPTIRKSGAGNIYIKNLDKAIDNKALHDTFSA 139
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD +GQS G+GFVQF+N+ESA+NAIDKLNGML+NDKQV+VG FLR+QERE
Sbjct: 140 FGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERE 199
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ KTKFNNV+VKNL E+TT+EDLKKIFGEYG ITSAVVMRDGDGKS+CFGFVNFEN D
Sbjct: 200 SGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPD 259
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DAA++VEALNGK FD++EWYVGKAQKKSERE ELKGQFEQ +KETVDKF+GLNLY+KNL
Sbjct: 260 DAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLNLYVKNLD 319
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSI D+KLKELFSEFGTITSCKVMRDP+G+SKGSGFVA+ST EEAS+AL EMNGKMIVSK
Sbjct: 320 DSITDDKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSK 379
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKEERRARLQAQFSQMRP AM P+V PRMPMYP G G+GQQ YGQ PPAI
Sbjct: 380 PLYVALAQRKEERRARLQAQFSQMRP-AMAPAVGPRMPMYPHGTPGIGQQLFYGQGPPAI 438
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPI 422
+PPQ GFGYQQQLVPGMR PNFFVP+V GQQ QRP GRR GAGPV Q QQPLP+
Sbjct: 439 VPPQPGFGYQQQLVPGMR------PNFFVPMVQPGQQAQRPSGRRSGAGPV-QPQQPLPM 491
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
M QM PRG YRYP GR+M D P G MLPVP DMG G+P RD + QPM AL+
Sbjct: 492 MQPQMLPRGRVYRYPPGRSMPDVPMAGLPGGMLPVPYDMG-GMPFRDGAFSQPMQTGALA 550
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
TALANA+PEQQRTLLGE+LYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPE+L+AKV
Sbjct: 551 TALANATPEQQRTLLGENLYPLVDQLEHENAAKVTGMLLEMDQTEVLHLLESPESLEAKV 610
Query: 543 AEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AEAMEVLR+V QQQAN+P +++A+LSLNENLVS
Sbjct: 611 AEAMEVLRTV-QQQANSPTNRMATLSLNENLVS 642
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+++ T+ L +F + G I S V RD +S +G+VN+ N DAA+A+E
Sbjct: 30 SLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEV 89
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + + T+ K N+YIKNL +ID++ L
Sbjct: 90 LNFTPVNGKPIRIMYSYRDP----------------TIRKSGAGNIYIKNLDKAIDNKAL 133
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D +G S G GFV F E A A+ ++NG ++ K +YV
Sbjct: 134 HDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFL 193
Query: 312 RKEERRA 318
R++ER +
Sbjct: 194 RRQERES 200
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
++F +LY+ +L ++ + +L +LF++ G I S +V RD S S G G+V ++ +A
Sbjct: 24 NQFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDA 83
Query: 289 SRALAEMNGKMIVSKPLYVAVAQR 312
++AL +N + KP+ + + R
Sbjct: 84 AQALEVLNFTPVNGKPIRIMYSYR 107
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/569 (80%), Positives = 507/569 (89%), Gaps = 2/569 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALD+LNFTPLN IRIMYSHRDPS+RKSG+GNIFIKNLDK IDHKALHDTFS+FGN
Sbjct: 78 AARALDMLNFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGN 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQF+N+ESAQ AI+KLNGML+NDKQV+VG FLRKQERE+
Sbjct: 138 ILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAI 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KT+FNNV+VKNL E+TT+EDLKK FGEYGTITSAVVMRDGDGK+KCFGFVNFENADDAA
Sbjct: 198 DKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAA 257
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVEALNGKKFDD+EW+VGKAQKK+ERE ELK +FEQ+MKE DKFQG NLYIKNL DSI
Sbjct: 258 TAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSI 317
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++LK+LFS FGTITSCKVMRDP+GIS+GSGFVAFSTPEEAS+AL EMNGKM+VSKPLY
Sbjct: 318 GDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLY 377
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RRARLQAQFSQ+RPVAM PSV PRMPMYPPG GLGQQ YGQAPPAIIPP
Sbjct: 378 VALAQRKEDRRARLQAQFSQIRPVAMAPSVAPRMPMYPPGGPGLGQQIFYGQAPPAIIPP 437
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR G R AG QQ+QQP+P+M Q
Sbjct: 438 QPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQR-PGGRRAGAAQQSQQPVPLMQQQ 496
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GR + D P AG ML VP DM +G+P RDA++ QP+PI AL++ALA
Sbjct: 497 MVPRGRVYRYPPGRGIPDVPMTGVAGGMLSVPYDM-SGMPMRDAALSQPIPIGALASALA 555
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NASPEQQRT+LGE+LYPLVEQLE DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 556 NASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 615
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
EVLRSV QQQA ADQLASLSLN+NLVS
Sbjct: 616 EVLRSVQQQQAGGAADQLASLSLNDNLVS 644
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 159/288 (55%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +L+ ++ L+D F+ G ++S ++ D + +S G+G+V + + + A A+
Sbjct: 23 TTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARAL 82
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N + + + R+ K+ N+F+KNLD+ + L F +G I
Sbjct: 83 DMLNFTPLNGSPIRIMY----SHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNI 138
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK +GFV F+N + A KA+E LNG +D++ YVG +K ERE
Sbjct: 139 LSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERE---- 194
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+DK + N+Y+KNL ++ +E LK+ F E+GTITS VMRD G +K G
Sbjct: 195 --------SAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFG 246
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F ++A+ A+ +NGK K +V AQ+K ER L+ +F Q
Sbjct: 247 FVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQ 294
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/569 (77%), Positives = 503/569 (88%), Gaps = 4/569 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+DVLNFTPLNNK+IR+ S RDP+ RKSG GNIFIKNLDKSID KALH+TFSSFG
Sbjct: 94 ATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGT 153
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCKIATD SGQSKG+GFVQ++++E+AQ AIDKLNGML+NDKQV+VG FLRKQ+R++
Sbjct: 154 IISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEM 213
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNN++VKNL +ST+++DL+K FGEYGTITS VVMRD DGKSKCFGFVNFEN +DAA
Sbjct: 214 SKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAA 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ALNGKKFDD+EWYVGKAQKKSERE ELK +FEQ +KE VDK+QG+NLY+KNL D+I
Sbjct: 274 KAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTI 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLKELFSE+GTITSCKVMRDPSGIS+GSGFVAFSTPEEASRAL EMNGKMIVSKPLY
Sbjct: 334 DDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLY 393
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMRPVAM PS+ PRMPMY PG G+GQQ YGQAPPA+I P
Sbjct: 394 VALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAP 453
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGYQQQLVPGMRP G PMPNFF+P+V QGQQGQRPGGRRGAGP QQTQQP+P+MP Q
Sbjct: 454 QAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQ 513
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
+ PRG YR+P GRN+ D G MLPVP +MG +P R+A++GQPMPITAL++ALA
Sbjct: 514 LMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLP-REAAMGQPMPITALASALA 572
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA +QQRT+LGE+LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM
Sbjct: 573 NAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAM 632
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
+VLR+V+Q N ADQL LSLNENLVS
Sbjct: 633 DVLRNVSQP---NVADQLGGLSLNENLVS 658
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 169/288 (58%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD+S+ L+D F+ G ++S ++ D +G+S G+G+V + N++ A AI
Sbjct: 39 TTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAI 98
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N+K + V R+ K+ N+F+KNLD+S + L + F +GTI
Sbjct: 99 DVLNFTPLNNKTIRVS----VSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTI 154
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D G+SK +GFV +++ + A A++ LNG +D++ YVG +K +R+ E+
Sbjct: 155 ISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEM- 213
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ KF N+Y+KNL DS ++ L++ F E+GTITS VMRD G SK G
Sbjct: 214 ---------SKTKFN--NIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFG 262
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F PE+A++A+ +NGK K YV AQ+K ER L+++F Q
Sbjct: 263 FVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQ 310
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEAS 289
+F +LY+ +L S+ D +L +LF++ G + S +V RD S G S G G+V +S ++A+
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
RA+ +N + +K + V+V++R R
Sbjct: 96 RAIDVLNFTPLNNKTIRVSVSRRDPTDR 123
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/557 (79%), Positives = 488/557 (87%), Gaps = 2/557 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLNN+ IRIMYSHRDPSIRKSG GNIFIKNLDK+IDHKALHDTFSSFGN
Sbjct: 88 AARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGN 147
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A DGSGQSKG+GFVQF+ +E+AQ AI+KLNGML+NDKQV+VG FLRKQERE+
Sbjct: 148 ILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTG 207
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ KFNNVFVKNL ESTTD++LKK FGE+GTITSAVVMRDGDGKSKCFGFVNFE+ DDAA
Sbjct: 208 DRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAA 267
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKK DD+EWYVGKAQKKSERE ELK +FEQ+MKE DK+QG NLY+KNL DSI
Sbjct: 268 RAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSI 327
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKELFS +GTITSCKVMRDP+G+S+GSGFVAFSTPEEASRAL EMNGKM+ SKPLY
Sbjct: 328 ADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLY 387
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
V +AQRKE+RRARLQAQF+QMRPV+M PSV PRMPMYPPG G+GQQ YGQ PPAIIP
Sbjct: 388 VTLAQRKEDRRARLQAQFAQMRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPS 447
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQLVPGMRP GAP+PNFFVP+V QGQQGQR G R G VQQ+QQP+P+MP Q
Sbjct: 448 QPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQR-PGGRRGGGVQQSQQPVPLMPQQ 506
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GR M D P AG M VP D+G G+P RDAS+ Q +PI AL++ LA
Sbjct: 507 MLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVG-GMPIRDASLSQQIPIGALASHLA 565
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NASPEQQRT+LGE+LYPLVEQLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 566 NASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 625
Query: 547 EVLRSVAQQQANNPADQ 563
+VLR+VAQQQA ADQ
Sbjct: 626 DVLRNVAQQQAGGAADQ 642
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 166/288 (57%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD ++ L+D F+ G ++S ++ D + +S G+G+V + N + A A+
Sbjct: 33 TTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 92
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N++ + + + R+ K+ N+F+KNLD++ + L F +G I
Sbjct: 93 DVLNFTPLNNRPIRIMY----SHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNI 148
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V DG G+SK +GFV F+ + A KA+E LNG +D++ YVG +K ERE
Sbjct: 149 LSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERE---- 204
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
T D+ + N+++KNL +S D++LK+ F EFGTITS VMRD G SK G
Sbjct: 205 --------STGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFG 256
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F + ++A+RA+ +NGK I K YV AQ+K ER L+ +F Q
Sbjct: 257 FVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQ 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L ++ D +L +LF++ G + S +V RD + S G G+V +S P++A+R
Sbjct: 31 FVTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAAR 90
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL +N + ++P+ + + R
Sbjct: 91 ALDVLNFTPLNNRPIRIMYSHR 112
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/570 (77%), Positives = 498/570 (87%), Gaps = 4/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RALDVLNFTPLN IR+MYSHRDPS+RKSG+GNIFIKNLDK+IDHKALHDTFS+FG+
Sbjct: 83 ASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGS 142
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKGFGFVQF+ +E+A AI+KLNGML+NDKQVFVG FLRKQERE+V+
Sbjct: 143 ILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVS 202
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL E+T++EDLK +FGE+G ITS VVMRDG+GKSKCFGFVNFENADDAA
Sbjct: 203 EKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAA 262
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
++VEALNGKK D +EWYVGKAQKKSERE ELK +FEQ++KE DK+QG NLY+KNL DSI
Sbjct: 263 RSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSI 322
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KLKELF+ FGTITSCKVMRDP+GIS+GSGFVAFS+PEEA+RALAEMNG+MIVSKPLY
Sbjct: 323 DDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLY 382
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-MPMYPPGPSGLGQQFLYGQAPPAIIP 365
VA+AQRKE+RRARLQAQFSQM+P+AM SV PR MPMYPPG G+GQQ YGQAPP II
Sbjct: 383 VALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIIS 442
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
Q GFGYQQQL+PGMRP G PMPNFFVP+V QGQQGQR G R AG +QQTQQP+P+M
Sbjct: 443 SQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQR-SGGRRAGAIQQTQQPVPLMQQ 501
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
QM PRG YRYP GR + D P AG M VP +MG G+P RDA QP+P+ AL++AL
Sbjct: 502 QMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMG-GMPPRDAVHPQPVPVGALASAL 560
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA+P+QQRT+LGE+LYPLVEQLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 561 ANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 620
Query: 546 MEVLRSVAQQQANNPADQLASLSLNENLVS 575
MEVLRSVA QQ+ N ADQLASLSL +NL S
Sbjct: 621 MEVLRSVA-QQSGNAADQLASLSLTDNLDS 649
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 160/288 (55%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD ++ L+D F+ G ++S ++ D S +S G+G+V + N A A+
Sbjct: 28 TTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRAL 87
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N + V + R+ K+ N+F+KNLD++ + L F +G+I
Sbjct: 88 DVLNFTPLNGNPIRVMY----SHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSI 143
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK FGFV F+ + A KA+E LNG +D++ +VG +K ERE
Sbjct: 144 LSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERE---- 199
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+K + N+++KNL ++ +E LK +F EFG ITS VMRD G SK G
Sbjct: 200 --------SVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFG 251
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F ++A+R++ +NGK + K YV AQ+K ER L+++F Q
Sbjct: 252 FVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQ 299
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/570 (76%), Positives = 497/570 (87%), Gaps = 4/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RALDVLNFTPLN IR+MYSHRDPS+RKSG+GNIFIKNLDK+IDHKALHDTFS+FG+
Sbjct: 83 ASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGS 142
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKGFGFVQF+ +E+A AI+KLNGML+NDKQVFVG FLRKQERE+V+
Sbjct: 143 ILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVS 202
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL E+T++EDLK +FGE+G ITS VVMRDG+GKSKCFGFVNFENADDAA
Sbjct: 203 EKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAA 262
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
++VEALNGKK D +EWYVGKAQKKSERE ELK +FEQ++KE DK+QG NLY+KNL DSI
Sbjct: 263 RSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSI 322
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KLKELF+ FGTITSCKVMRDP+GIS+GSGFVAFS+PEEA+RALAEMNG+MIVSKPLY
Sbjct: 323 DDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLY 382
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-MPMYPPGPSGLGQQFLYGQAPPAIIP 365
VA+AQRKE+R ARLQAQFSQM+P+AM SV PR MPMYPPG G+GQQ YGQAPP II
Sbjct: 383 VALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIIS 442
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
Q GFGYQQQL+PGMRP G PMPNFFVP+V QGQQGQR G R AG +QQTQQP+P+M
Sbjct: 443 SQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQR-SGGRRAGAIQQTQQPVPLMQQ 501
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
QM PRG YRYP GR + D P AG M VP +MG G+P RDA QP+P+ AL++AL
Sbjct: 502 QMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMG-GMPPRDAVHPQPVPVGALASAL 560
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA+P+QQRT+LGE+LYPLVEQLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 561 ANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 620
Query: 546 MEVLRSVAQQQANNPADQLASLSLNENLVS 575
MEVLRSVA QQ+ N ADQLASLSL +NL S
Sbjct: 621 MEVLRSVA-QQSGNAADQLASLSLTDNLDS 649
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 160/288 (55%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD ++ L+D F+ G ++S ++ D S +S G+G+V + N A A+
Sbjct: 28 TTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRAL 87
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N + V + R+ K+ N+F+KNLD++ + L F +G+I
Sbjct: 88 DVLNFTPLNGNPIRVMY----SHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSI 143
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK FGFV F+ + A KA+E LNG +D++ +VG +K ERE
Sbjct: 144 LSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERE---- 199
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+K + N+++KNL ++ +E LK +F EFG ITS VMRD G SK G
Sbjct: 200 --------SVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFG 251
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F ++A+R++ +NGK + K YV AQ+K ER L+++F Q
Sbjct: 252 FVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQ 299
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/570 (74%), Positives = 490/570 (85%), Gaps = 2/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL+VLNFTPL+ K IRIMYS+RDP+IR+SG GNIFIKNLDK+IDHKALHDTFS+FGN
Sbjct: 81 AARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGN 140
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SGQSKG+GFVQ++++E+AQ AI+KLNGML+NDKQV+VG F+RK ER+
Sbjct: 141 ILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDMAV 200
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KT+F NVFVKNL EST +E+L+KIFGE+G ITS VM+D DGKS+CFGFVNFENA+DAA
Sbjct: 201 DKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAA 260
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNG K D+++W+VG+AQKKSERE ELK +FEQ+ KE VDK QGLNLYIKNL DSI
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSI 320
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKELFS +GTITSCKVMRDPSG+SKGSGFVAFS PEEASRAL+EMNGKM+VSKPLY
Sbjct: 321 SDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLY 380
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMRP+AM SV PRMPMYPPG GLGQQ YGQ PA++PP
Sbjct: 381 VALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLPP 440
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVV-SQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
QAGFGYQQQLVPGMRP G PMPNFF+P+V Q + G R GA P+QQ QQP+P+M
Sbjct: 441 QAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVPLMQQ 500
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
QM PRG YRYP GR + D F G M +P DMG G+P RDA + QP+P+ AL+TAL
Sbjct: 501 QMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMG-GMPVRDAGIVQPIPVGALATAL 559
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
AN+SP +QRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 560 ANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 619
Query: 546 MEVLRSVAQQQANNPADQLASLSLNENLVS 575
MEVLR+V+QQQ++NPADQLASLSLN+ LVS
Sbjct: 620 MEVLRNVSQQQSSNPADQLASLSLNDGLVS 649
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 163/286 (56%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ G ++S ++ D + Q S G+G+V + N + A A++
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN ++ K + + + R+ ++ N+F+KNLD++ + L F +G I S
Sbjct: 88 LNFTPLHGKPIRIMY----SNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILS 143
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV +++ + A KA+E LNG +D++ YVG +K ER+
Sbjct: 144 CKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDM----- 198
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
VDK + N+++KNL +S +E+L+++F EFG ITS VM+D G S+ GFV
Sbjct: 199 -------AVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFV 251
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F E+A+RA+ +NG + +K +V AQ+K ER L+ +F Q
Sbjct: 252 NFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQ 297
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/568 (78%), Positives = 499/568 (87%), Gaps = 8/568 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTP+NNKSIR+MYSHRDPS RKSGT NIFIKNLDK+IDHKALHDTFSSFG
Sbjct: 86 AARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ 145
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCKIATDGSGQSKG+GFVQFE ++SAQNAIDKLNGMLINDKQVFVGHFLRKQ+R+ V
Sbjct: 146 IMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL 205
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNV+VKNL ES T++DLK FG YGTITSAV+MRD DG+SKCFGFVNFENA+DAA
Sbjct: 206 SKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAA 265
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET-VDKFQGLNLYIKNLGDS 245
KAVEALNGKK DD+EWYVGKAQKKSEREQELKG+FEQ +KE+ VDKFQGLNLY+KNL DS
Sbjct: 266 KAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDS 325
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
I DEKLKE+FSEFGTITS K+MRDP+G+S+GSGFVAFSTPEEASRAL EMNGKMIVSKPL
Sbjct: 326 ITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPL 385
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
YVAVAQRKE+RRARLQAQFSQMRPVA+ PSV PRMP+YPPG GLGQQF+YGQ PPA++P
Sbjct: 386 YVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMP 445
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
PQAGFGYQQQLVPGMRP G PMP++FVP+V QGQQGQRPGGRRG Q QQ +
Sbjct: 446 PQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQ 505
Query: 426 QMPPRGHAYRYPLGR-NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
+ PR YRYP GR N+QD P G M+ DMG G+P RD V PMPI AL+TA
Sbjct: 506 ML-PRQRVYRYPPGRSNIQDAPVQNIGGGMM--SYDMG-GLPLRD--VVPPMPIHALATA 559
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LANA PEQQRT+LGE+LYPLV+QLE D+AAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAE
Sbjct: 560 LANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAE 619
Query: 545 AMEVLRSVAQQQANNPADQLASLSLNEN 572
AMEVLR+V+QQQ N+PADQLASLSLN++
Sbjct: 620 AMEVLRNVSQQQGNSPADQLASLSLNDS 647
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +L+ +++ L+D F+ G ++S ++ D + +S G+G+V F N + A A+
Sbjct: 31 TTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAL 90
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N+K + V + R+ + K+ N+F+KNLD++ + L F +G I
Sbjct: 91 DVLNFTPMNNKSIRVMY----SHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQI 146
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + DG G+SK +GFV FE D A A++ LNG +D++ +VG +K +R+ L
Sbjct: 147 MSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL- 205
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ KF N+Y+KNL +S ++ LK F +GTITS +MRD G SK G
Sbjct: 206 ---------SKTKFN--NVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFG 254
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F E+A++A+ +NGK + K YV AQ+K ER L+ +F Q
Sbjct: 255 FVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQ 302
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPE 286
++F +LY+ +L +++D +L +LF++ G + S +V RD + S G G+V F+ P+
Sbjct: 25 VANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQ 84
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+A+RAL +N + +K + V + R R
Sbjct: 85 DAARALDVLNFTPMNNKSIRVMYSHRDPSSR 115
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/570 (73%), Positives = 487/570 (85%), Gaps = 8/570 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL+VLNFTPL+ K IRIMYS+RDP+IR+SG GNIFIKNLDK+IDHKALHDTFS+FGN
Sbjct: 81 AARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGN 140
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SGQSKG+GFVQ+++ E+AQ AI+KLNGML+NDKQV+VG F+RKQER+
Sbjct: 141 ILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDMAV 200
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KT+F NVFVKNL EST +E+L+KIFGE+GTITS VM+D DGKS+CFGFVNFENA+DAA
Sbjct: 201 DKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAA 260
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNG K D+++W+VG+AQKKSERE ELK +FEQ+ +E VDK QGLNLY+KNL DSI
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSI 320
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KLKELFS +GTITSCKVMRDPSG+SKGSGFVAFSTPEEASRAL+EMNGKM+VSKPLY
Sbjct: 321 SDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLY 380
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMRP+AM SV PRMPMYPPG GLGQQ YGQ PPA++PP
Sbjct: 381 VALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPPPAMLPP 440
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVV-SQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
QAGFGYQQQLVPGMRP G PMPNFF+P+V Q + G R GA P+QQ QQP+P+M
Sbjct: 441 QAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVPLMQQ 500
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
QM PRG YRYP GR + D F G M +P D+G I QP+P+ AL+TAL
Sbjct: 501 QMFPRGRGYRYPPGRGLPDGAFPGVGGGMFSIPYDIGGRIV-------QPIPVGALATAL 553
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANASP +QRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 554 ANASPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 613
Query: 546 MEVLRSVAQQQANNPADQLASLSLNENLVS 575
MEVLR+V+QQQ++NPADQLASLSLN+ LVS
Sbjct: 614 MEVLRNVSQQQSSNPADQLASLSLNDGLVS 643
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 164/286 (57%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ G ++S ++ D + Q S G+G+V + N + A A++
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN ++ K + + + R+ ++ N+F+KNLD++ + L F +G I S
Sbjct: 88 LNFTPLHGKPIRIMY----SNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILS 143
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV +++ + A KA+E LNG +D++ YVG +K ER+
Sbjct: 144 CKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDM----- 198
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
VDK + N+++KNL +S +E+L+++F EFGTITS VM+D G S+ GFV
Sbjct: 199 -------AVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFV 251
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F E+A+RA+ +NG + +K +V AQ+K ER L+ +F Q
Sbjct: 252 NFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQ 297
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/568 (79%), Positives = 500/568 (88%), Gaps = 3/568 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNFTPLN IR+MYSHRDP+IRKSG GNIFIKNLDK+IDHKALHDTFS+FGN
Sbjct: 79 AARALEMLNFTPLNGSPIRVMYSHRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 138
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQF+++E+AQ AI+KLNGML+NDKQV+VG FLRKQER+T
Sbjct: 139 ILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTAT 198
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K +FNNVFVKNL E+TT+EDL K FGE+GTITS VVMRDGDGKSKCFGFVNFENA+DAA
Sbjct: 199 DKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAA 258
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALNGKK DD+EW+VGKAQKK ERE ELK +FEQ+MKE DKFQG NLYIKNL DSI
Sbjct: 259 KAVEALNGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSI 318
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKELFS FGTITSCKVMRDP+GIS+GSGFVAFSTPEEASRAL EMNGK++VSKPLY
Sbjct: 319 GDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLY 378
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RRARLQAQFSQMRPVAM PSV PRMPMYPP GLGQQ YGQAPPAIIPP
Sbjct: 379 VALAQRKEDRRARLQAQFSQMRPVAMAPSVGPRMPMYPPAGPGLGQQIFYGQAPPAIIPP 438
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR G R AG QQ+QQP+P+M Q
Sbjct: 439 QPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQR-PGGRRAGAGQQSQQPVPLMQQQ 497
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GR + D P AG MLPVP DMG G+P RDA++ Q +P+ AL+TALA
Sbjct: 498 MLPRGRVYRYPPGRGLPDVPMTGVAGGMLPVPYDMG-GMPMRDAALSQSIPVGALATALA 556
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+P+QQRT+LGE+LYPLVEQLE +AAAKVTGMLLEMDQTEVLHLLESPEALKAKV EAM
Sbjct: 557 NATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKAKVNEAM 616
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLV 574
EVLR+V QQQA ADQLASLSLN+NLV
Sbjct: 617 EVLRTV-QQQATGTADQLASLSLNDNLV 643
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 190
+++V +L+ S TD L +F + G + S V RD +S +G+VN+ N DAA+A+E
Sbjct: 25 TSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALE 84
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN + V + + T+ K N++IKNL +ID +
Sbjct: 85 MLNFTPLNGSPIRVMYSHRDP----------------TIRKSGAGNIFIKNLDKAIDHKA 128
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV DPSG SKG GFV F + E A +A+ ++NG ++ K +YV
Sbjct: 129 LHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPF 188
Query: 311 QRKEER 316
RK+ER
Sbjct: 189 LRKQER 194
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L S+ D +L +LF++ G + S +V RD S S G G+V +S P++A+R
Sbjct: 22 FVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAAR 81
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL +N + P+ V + R
Sbjct: 82 ALEMLNFTPLNGSPIRVMYSHR 103
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/572 (76%), Positives = 491/572 (85%), Gaps = 16/572 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LNFTPLN K IRIMYS+RDP+IRKSG GNIFIKNLDKSID+KALHDTFS+FGN
Sbjct: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD GQS+G+GFVQF+N+ESA++AIDKLNGML+NDKQVFVG FLRKQERE+ A
Sbjct: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KT+FNNV+VKNL E+TT++DLKKIFGE+G ITS VMRD DGKSKCFGFVNF++ DDAA
Sbjct: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
++VEALNGKKFDD+EWYVGKAQKK ERE ELKG+FEQ++KET DKF+GLNLY+KNL DSI
Sbjct: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KLKELFSEFGTITSCKVMRDP+GIS+GSGFVAFST EEAS+AL EMNGKM+VSKPLY
Sbjct: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQAQFSQMR P V PRMPMYPP GLGQQ YGQ P IIPP
Sbjct: 394 VALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQG-PPIIPP 447
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMPH 425
Q GFGYQQQLVPGMR PN+FVP+V GQQ QRPGGRR G GP+QQ QQP+P+M
Sbjct: 448 QPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP 501
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
+M PRG YRYP G N+ D P G MLP P D+G G+P RDA+ QPM AL++AL
Sbjct: 502 RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIG-GMPFRDAAFSQPMQTGALASAL 560
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANASPEQQRTLLGE+LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 561 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 620
Query: 546 MEVLRSVAQQQAN--NPADQLASLSLNENLVS 575
MEVLR+VAQQQA +P D++ASLSLN+N+VS
Sbjct: 621 MEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 652
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 165/292 (56%), Gaps = 17/292 (5%)
Query: 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG-QSKGFGFVQFENKESA 94
R+ + ++++ +LD S++ L+D F+ G ++S ++ D S +S G+G+V + A
Sbjct: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Query: 95 QNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE 154
A+D+LN +N K + + + R+ K+ N+F+KNLD+S ++ L F
Sbjct: 95 TRALDELNFTPLNGKPIRIMY----SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
Query: 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 214
+G I S V D G+S+ +GFV F+N + A A++ LNG +D++ +VG +K ERE
Sbjct: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
Query: 215 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 274
T DK + N+Y+KNL ++ ++ LK++F EFG ITS VMRD G S
Sbjct: 211 ------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
K GFV F P++A+R++ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/574 (76%), Positives = 491/574 (85%), Gaps = 7/574 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLN K IR+MYSHRDPSIRKSG GNIFIKNLDK+IDHKALHDTFS+FG+
Sbjct: 83 AARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGS 142
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SGQSKG+GFVQF+N+ESA AI+KLNGML+NDKQV+VG FLRKQER+ V
Sbjct: 143 ILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVV 202
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K+KFNNVFVKNL E+TT+EDL K F E+GT+TS VVMRD DGKS+CFGFVNFENADDAA
Sbjct: 203 DKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAA 262
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGK DD+EWYVGKAQKKSERE ELK +FEQ MKE DK+QG NLYIKNL DSI
Sbjct: 263 RAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSI 322
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KLKELF+ FGTITSCKVMRDP+GIS+GSGFVAFSTP+EASRAL EMNGKM+VSKPLY
Sbjct: 323 GDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLY 382
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RRARLQAQFSQ+R V M SV PRMP+YPPG G+GQQ YGQAPPA+IP
Sbjct: 383 VALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAMIPS 442
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQLVPG+RP G PMPNFFVP+V QGQQGQR G R AG VQQTQQP+P+M Q
Sbjct: 443 QGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQR-PGGRRAGAVQQTQQPVPMMQQQ 501
Query: 427 MPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
M PR G YRYP GR + D AG M VP DMG G+P RDA+ QP+PI AL++AL
Sbjct: 502 MLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMG-GMPLRDAAHSQPIPIGALASAL 560
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA+P+QQRT+LGE+LYPLVEQLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 561 ANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 620
Query: 546 MEVLRSV----AQQQANNPADQLASLSLNENLVS 575
MEVLR+V QQQA N ADQLASLSL ENLVS
Sbjct: 621 MEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS 654
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 165/288 (57%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD ++ L+D F+ G ++S ++ D + +S G+G+V + N + A A+
Sbjct: 28 TTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 87
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N K + V + R+ K+ N+F+KNLD++ + L F +G+I
Sbjct: 88 DVLNFTPLNGKPIRVMY----SHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSI 143
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK +GFV F+N + A KA+E LNG +D++ YVG +K ER+
Sbjct: 144 LSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDG--- 200
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
VDK + N+++KNL ++ +E L + FSEFGT+TS VMRD G S+ G
Sbjct: 201 ---------VVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFG 251
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F ++A+RA+ +NGK++ K YV AQ+K ER L+ +F Q
Sbjct: 252 FVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQ 299
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L ++ D +L ++F++ G + S +V RD + S G G+V +S P++A+R
Sbjct: 26 FVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAAR 85
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N + KP+ V + R R
Sbjct: 86 ALDVLNFTPLNGKPIRVMYSHRDPSIR 112
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/569 (73%), Positives = 472/569 (82%), Gaps = 16/569 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA+A+DVLNFTPLN K IRIMYS RDPS RKSG N+FIKNLDK+IDHKAL+DTFS+FGN
Sbjct: 78 AAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGN 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG GFVQFE++ESAQNAIDKLNGMLINDKQVFVG FLRKQ+RE+
Sbjct: 138 ILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESAL 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TKFNNVFVKNL +S T+ DL++IFGEYG ITSAVVMRD DGKSK FGFVNF N DDAA
Sbjct: 198 SGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAA 257
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALNGK FD +EWYVGKAQKKSERE ELKGQ EQ KETVDK+ G NLYIKNL DS+
Sbjct: 258 KAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSV 317
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DE+L ELFSEFGTITSCKVMRDP+GIS+GSGFV+FS E A+RAL EMNGKM+ KPLY
Sbjct: 318 GDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLY 377
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RRARLQAQFSQ RP A+ P+V PRMP+YP G +GQQFLYGQA PA I P
Sbjct: 378 VALAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATI-P 436
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QA FGYQQ VPGMRP GA PNF+VP+V QGQQGQRPGG RG+GP+QQ QQPLP+M Q
Sbjct: 437 QAAFGYQQHFVPGMRPGGA--PNFYVPLVQQGQQGQRPGGHRGSGPMQQLQQPLPLMHQQ 494
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRGH YRYP G NMQ+ G M+ +GQ MP AL++ALA
Sbjct: 495 MLPRGHVYRYPSGSNMQNIQLAGVPGGMVTY-------------GIGQQMPTQALASALA 541
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGE+LYPLV++LE +AAAKVTGMLLEMDQ EVLHL+ESP+ALKAKV EAM
Sbjct: 542 NATPEQQRTMLGEALYPLVDKLEHEAAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAM 601
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
+VL+ V QQQ+N+PADQLASLSLN+N+ S
Sbjct: 602 DVLKKVTQQQSNSPADQLASLSLNDNVES 630
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 169/310 (54%), Gaps = 20/310 (6%)
Query: 19 LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GS 77
L N +I S +PS+ T ++++ +L ++ L+D F+ ++S +I D +
Sbjct: 5 LENPTIDAAASGANPSLT---TISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVAT 61
Query: 78 GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVK 137
QS G+G+V F N A AID LN +N K + + + + R+ A K+ NVF+K
Sbjct: 62 QQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSI----RDPSARKSGAANVFIK 117
Query: 138 NLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 197
NLD++ + L F +G I S V D G+SK GFV FE+ + A A++ LNG
Sbjct: 118 NLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLI 177
Query: 198 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
+D++ +VG +K +RE L G KF N+++KNL DS+ + L+ +F E
Sbjct: 178 NDKQVFVGPFLRKQDRESALSGT----------KFN--NVFVKNLLDSMTEADLERIFGE 225
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+G ITS VMRD G SKG GFV F+ ++A++A+ +NGK K YV AQ+K ER
Sbjct: 226 YGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERE 285
Query: 318 ARLQAQFSQM 327
L+ Q Q+
Sbjct: 286 LELKGQHEQI 295
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/578 (76%), Positives = 491/578 (84%), Gaps = 7/578 (1%)
Query: 3 MLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFS 62
M AARALDVLNFTP N K IR+MYSHRDPSIRKSG GNIFIKNLDK+IDHKALHDTFS
Sbjct: 1 MCLLAARALDVLNFTPXNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFS 60
Query: 63 SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+FG+ILSCK+A D SGQSKG+GFVQF+N+ESA AI+KLNGML+NDKQV+VG FLRKQER
Sbjct: 61 AFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQER 120
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ V K+KFNNVFVKNL E+TT+EDL K F E+GT+TS VVMRD DGKS+CFGFVNFENA
Sbjct: 121 DGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENA 180
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DDAA+AV+ LNGK DD+EWYVGKAQKKSERE ELK +FEQ MKE DK+QG NLYIKNL
Sbjct: 181 DDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNL 240
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI D+KLKELF+ FGTITSCKVMRDP+GIS+GSGFVAFSTP+EASRAL EMNGKM+VS
Sbjct: 241 DDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVS 300
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKE+RRARLQAQFSQ+R V M SV PRMP+YPPG G+GQQ YGQAPPA
Sbjct: 301 KPLYVALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPPGGPGIGQQLFYGQAPPA 360
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+IP Q GFGYQQQLVPG+RP G PMPNFFVP+V QGQQGQR G R AG VQQTQQP+P+
Sbjct: 361 MIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQR-PGGRRAGAVQQTQQPVPM 419
Query: 423 MPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL 481
M QM PR G YRYP GR + D AG M VP DMG G+P RDA+ QP+PI AL
Sbjct: 420 MQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMG-GMPLRDAAHSQPIPIGAL 478
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
++ALANA+P+QQRT+LGE+LYPLVEQLE D AAKVTGMLLEMDQTEVLHLLESPEALKAK
Sbjct: 479 ASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 538
Query: 542 VAEAMEVLRSV----AQQQANNPADQLASLSLNENLVS 575
VAEAMEVLR+V QQQA N ADQLASLSL ENLVS
Sbjct: 539 VAEAMEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS 576
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/571 (73%), Positives = 475/571 (83%), Gaps = 20/571 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA+A+DVLNFTPLN K+IRIMYS RDPS RKSG N+FIKNLDK+IDHKAL DTFS+FGN
Sbjct: 78 AAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGN 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SGQSKG GFVQFE++ESAQNAIDKLNGMLINDKQV+VG F RKQ+RE+
Sbjct: 138 ILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESAL 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TKFNNV+VKNL E+TT+ DLK IFGEYG ITSAVVMRD DGKSK FGFVNF N +DAA
Sbjct: 198 SGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAA 257
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALNGK FD +EWYVGKAQKKSERE ELK + EQ+ KETVDK+ G NLYIKNL DS+
Sbjct: 258 KAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDSV 317
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DE+L+ELFSEFGTITSCKVMRDPSGIS+GSGFVAFS E AS AL EMNGKM+ KPLY
Sbjct: 318 GDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLY 377
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RRARLQAQFSQ RPVA+ P+V PRMP+YP G G+GQQ LYGQA P++I P
Sbjct: 378 VALAQRKEDRRARLQAQFSQARPVAITPNVSPRMPLYPLGAPGIGQQLLYGQAAPSMI-P 436
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QA FGYQQ VPGMRP GA PNF+VP+V QGQQGQR GG+RGAGP+QQ QQPLP+M Q
Sbjct: 437 QAAFGYQQHFVPGMRPGGA--PNFYVPLVQQGQQGQRSGGQRGAGPMQQLQQPLPLMHQQ 494
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS--VGQPMPITALSTA 484
M PRGH YRYP G NMQ+ AG+P S +GQPMP AL++A
Sbjct: 495 MLPRGHVYRYPPGSNMQNIQL---------------AGVPGGMVSYGIGQPMPTQALASA 539
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LANA+PEQQRT+LGE+LYPLV++LE + AAKVTGMLLEMDQ EVLHL+ESP+ALKAKV E
Sbjct: 540 LANATPEQQRTMLGEALYPLVDKLEHETAAKVTGMLLEMDQPEVLHLIESPDALKAKVVE 599
Query: 545 AMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AM+VLR V QQQ+N+PADQLASLSLN+N+ S
Sbjct: 600 AMDVLRKVTQQQSNSPADQLASLSLNDNVES 630
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 170/311 (54%), Gaps = 24/311 (7%)
Query: 17 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD- 75
TP N+ + S +PS+ T ++++ +LD ++ L+D F+ ++S +I D
Sbjct: 7 TPTNDAAA----SGANPSMT---TISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDV 59
Query: 76 GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVF 135
+ QS G+G+V F N A AID LN +N K + + + + R+ A K+ NVF
Sbjct: 60 ATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSI----RDPSARKSGAANVF 115
Query: 136 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
+KNLD++ + L F +G I S + D G+SK GFV FE+ + A A++ LNG
Sbjct: 116 IKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGM 175
Query: 196 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+D++ YVG Q+K +RE L G KF N+Y+KNL ++ + LK +F
Sbjct: 176 LINDKQVYVGPFQRKQDRESALSGT----------KFN--NVYVKNLFEATTEADLKSIF 223
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
E+G ITS VMRD G SKG GFV F+ E+A++A+ +NGK K YV AQ+K E
Sbjct: 224 GEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSE 283
Query: 316 RRARLQAQFSQ 326
R L+ + Q
Sbjct: 284 RELELKERNEQ 294
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/575 (70%), Positives = 476/575 (82%), Gaps = 9/575 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARAL++LNFTP+N K IRIMYS+RDPS RKSG NIFIKNLDKSID+KAL+DTFS F
Sbjct: 91 ADAARALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVF 150
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+AT+ SG+SKG+GFVQFE +E+AQNAI KLNGML+NDK+V+VG F+RKQERE
Sbjct: 151 GNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQEREN 210
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
V+ KFNNV+VKNL ESTT+++LK+IFG++G ITS VVMR+GDGKS+CFGFVNFEN DD
Sbjct: 211 VSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDD 270
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA+AVE LNGKKFDD+EWYV +AQKKSERE ELK +FE+ +KE DK QG NLY+KNL D
Sbjct: 271 AARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDD 330
Query: 245 SI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SI DDEKLKE+F++FGTITSCKVMRD +G+SKGSGFVAF + E+ASRAL MNGKMI SK
Sbjct: 331 SIDDDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSK 390
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKEERRARLQAQFSQMRP+ M PSV PRMPMYPPG G+GQQ YGQ PPA
Sbjct: 391 PLYVALAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAF 450
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPI 422
+ PQ GFG+QQ L+PGMRP+ P+PNF +P+V QGQQ QRP GRR G G + QQP+P+
Sbjct: 451 VNPQPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGI---QQPMPM 507
Query: 423 MPHQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 480
QM PRG YRY GR M D F G G ++P P +MG +P DA +PI A
Sbjct: 508 GHQQMLPRGSRGGYRYASGRGMPDNAF-RGVGGLVPSPYEMGR-MPLSDAGAPPQVPIGA 565
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L++ALAN+ P+QQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALKA
Sbjct: 566 LASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKA 625
Query: 541 KVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
KVAEAMEVLR+ QQQAN P DQLA+L+L++ +VS
Sbjct: 626 KVAEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS 660
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 160/286 (55%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +LD S+ L D FS G+++S ++ D + + S G+ +V F + A A++
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN IN K + + + R+ + K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 100 LNFTPINGKPIRIMY----SNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V + G+SK +GFV FE + A A+ LNG +D++ YVG +K ERE + G
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQEREN-VSGN 214
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL +S ++ LKE+F +FG ITS VMR+ G S+ GFV
Sbjct: 215 ---------PKFN--NVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFV 263
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F P++A+RA+ ++NGK K YV AQ+K ER L+ +F +
Sbjct: 264 NFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEK 309
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
FQ +LY+ +L S+ D +L ++FS+ G++ S +V RD + +S G +V FS+P +A+R
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I KP+ + + R R
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSR 122
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/547 (78%), Positives = 479/547 (87%), Gaps = 2/547 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLN K IRIMYSHRDPSIRKSGTGNIFIKNLDK IDHKALHDTFS+FGN
Sbjct: 84 AARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGN 143
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SG SKG GFVQF+++E+AQ AIDKLNGML+NDKQVFVG F+RKQERE+
Sbjct: 144 ILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTI 203
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNNVFVKN+ E T+EDL +IFGE+G ITS VVMRDGDGKSKCFGFVNFEN DDAA
Sbjct: 204 NKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAA 263
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+VEALNG+KFDD+EWYVGKAQKKSERE ELK +FEQ MKE VDKFQG NLYIKNL DSI
Sbjct: 264 MSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSI 323
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KLKELF++FGTITSCKVMRDP+G+S+GSGFVAFS+PEEASRALAEMN KM+VSKPLY
Sbjct: 324 GDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLY 383
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RRARLQAQFSQMRPV M PSV PR+PMYPP GLGQQ YGQAPPAIIPP
Sbjct: 384 VALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMFYGQAPPAIIPP 443
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMPH 425
Q GFGYQQQLVPGMRPAG PMPNFFVP+V QGQQGQRPGGRR GA P+QQTQQ +P+M
Sbjct: 444 QPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQRPGGRRAGAVPMQQTQQQVPLMQQ 503
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
QM PRG +RYP GR + D P AG M+ VP DMG G+P DA++ Q +P+ AL+TAL
Sbjct: 504 QMLPRGRVFRYPPGRGLSDVPMPGVAGGMVSVPYDMG-GMPLHDAAISQSIPVGALATAL 562
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA P +QRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEA
Sbjct: 563 ANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEA 622
Query: 546 MEVLRSV 552
MEVLR+V
Sbjct: 623 MEVLRNV 629
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 159/288 (55%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAI 98
T ++++ +L+ +++ L+D FS G ++S ++ D S + S G+G+V + N + A A+
Sbjct: 29 TTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 88
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N K + + + R+ K+ N+F+KNLD+ + L F +G I
Sbjct: 89 DVLNFTPLNGKPIRIMY----SHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNI 144
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G SK GFV F++ + A KA++ LNG +D++ +VG +K ERE
Sbjct: 145 LSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERE---- 200
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
T++K + N+++KN+ + + +E L +F EFG ITS VMRD G SK G
Sbjct: 201 --------STINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFG 252
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F ++A+ ++ +NG+ K YV AQ+K ER L+++F Q
Sbjct: 253 FVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQ 300
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEAS 289
+F +LY+ +L +++D +L +LFS+ G + S +V RD S S G G+V +S P++A+
Sbjct: 26 QFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 85
Query: 290 RALAEMNGKMIVSKPLYVAVAQR 312
RAL +N + KP+ + + R
Sbjct: 86 RALDVLNFTPLNGKPIRIMYSHR 108
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/572 (69%), Positives = 473/572 (82%), Gaps = 9/572 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARAL++LNFTP+N + IRIMYS+RDPS+RKSGT NIFIKNLDKSID+KAL+DTF F
Sbjct: 86 ADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVF 145
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD SG+SKG+GFVQ+E E+A AI+KLNGML+NDK+V+VG F+RKQER+
Sbjct: 146 GNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDN 205
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
KFNNVFVKNL E+TT++DL++IFG++GTITS VVMR+GDG+SKCFGFVNFE+ D+
Sbjct: 206 SPGNVKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDE 265
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AV+ LNGKKFDD+EWYVG+AQKKSERE ELK +FE+ ++ET DK+Q NLY+KNL D
Sbjct: 266 AALAVQDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDD 325
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
++DDEKL+ELF+EFG ITSCKVMRD +G S+GSGFVAF + E+ASRALAEMN KM+ SKP
Sbjct: 326 TVDDEKLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKP 385
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
LYVA+AQRKE+R+ARLQAQFSQ+RPV M P+V PRM M+PPG G+GQQ YGQ PPA I
Sbjct: 386 LYVALAQRKEDRKARLQAQFSQLRPVPMAPTVGPRMAMFPPGVPGVGQQLFYGQPPPAFI 445
Query: 365 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIM 423
PQ GFG+QQ L+PGMRP GAPMPNF +P+V QGQQ QRP GRR G G +QQ+ +P+
Sbjct: 446 NPQPGFGFQQPLMPGMRP-GAPMPNFMMPMVQQGQQPQRPSGRRAGTGGMQQS---MPMG 501
Query: 424 PHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
QM R G YRYP GR M D P G G +P P ++G G+P RDA QP+PI AL+
Sbjct: 502 QQQMIARGGRGYRYPTGRGMPD-PAMHGVGGGMPSPYEIG-GMPMRDAGASQPVPIGALA 559
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
TALANA P+QQR +LGE+LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESP+ALKAKV
Sbjct: 560 TALANAPPDQQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKV 619
Query: 543 AEAMEVLRSVAQQQANNPADQLASLSLNENLV 574
AEAMEVLRS AQ +P QLASLSLN++ V
Sbjct: 620 AEAMEVLRS-AQHTNPSPEQQLASLSLNDHGV 650
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 158/286 (55%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD S+ L D F+ G ++S ++ D + +S G+ +V + A A++
Sbjct: 35 SLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEM 94
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN IN + + + + R+ K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 95 LNFTPINGRPIRIMY----SNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 150
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV +E + A A+E LNG +D++ YVG +K ER+ G
Sbjct: 151 CKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNS-PGN 209
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+++KNL ++ ++ L+E+F +FGTITS VMR+ G SK GFV
Sbjct: 210 V---------KFN--NVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFV 258
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F +P+EA+ A+ ++NGK K YV AQ+K ER L+ +F +
Sbjct: 259 NFESPDEAALAVQDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEK 304
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L S+ D +L ++F++ G + S +V RD + S G +V ++TP +A+R
Sbjct: 31 FPATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAAR 90
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I +P+ + + R R
Sbjct: 91 ALEMLNFTPINGRPIRIMYSNRDPSLR 117
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/569 (73%), Positives = 469/569 (82%), Gaps = 24/569 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA+A+DVLNFTPLNNK IRIMYSHRDPS+RKSG NIFIKNLD++IDHKAL+DTFS FGN
Sbjct: 78 AAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGN 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIA D SG SKG+GFVQFEN+ESAQ+AIDKLNGML+NDK V+VGHF RKQ+R+
Sbjct: 138 ILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNAL 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KFNNV+VKNL ES TD+DLK FGEYGTITSAVVMRD DGKSKCFGFVNFENAD AA
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAA 257
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFDD+EWYVGKA KK ERE ELK + EQ+MKETVDKF G NLY+KNL DS+
Sbjct: 258 EAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSV 317
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKL ELFSEFGT+TSCK++RDP GIS+GSGFVAFSTPEEA+RALAEMNGKM+ KPLY
Sbjct: 318 TDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLY 377
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQ+KEER+ARLQAQFSQ+RPV M P + PR+P YP G G+GQQ +YGQAPPA I
Sbjct: 378 VAPAQKKEERKARLQAQFSQVRPVTMAP-IAPRLPFYPAGVPGMGQQIMYGQAPPAFI-S 435
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGFGY QQLVPGMRP GAPMPNFF+P+V QGQQGQRPGGRRGA P+QQ LP+M Q
Sbjct: 436 QAGFGYPQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRGASPMQQLPHSLPMMQQQ 495
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP GRN Q GIP + G PM AL+TALA
Sbjct: 496 MHPRGRVYRYPTGRNPQ--------------------GIPMPGVAGGTPM--QALATALA 533
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA PEQQRT+LGE LYPLVE++E AAKVTGMLLEMDQ EVLHL+ESPEALK KVAEA+
Sbjct: 534 NAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAV 593
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
+VLR+VAQQQ+N+P DQLASLSLN+NL S
Sbjct: 594 DVLRNVAQQQSNSPTDQLASLSLNDNLES 622
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 153/288 (53%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD + L+D F+ G ++S +I D S QS G+G+V F N A A+
Sbjct: 23 TTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAM 82
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N+K + + + R+ K+ N+F+KNLD + + L F +G I
Sbjct: 83 DVLNFTPLNNKPIRIMY----SHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNI 138
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D G SK +GFV FEN + A A++ LNG +D+ YVG Q+K +R+ L
Sbjct: 139 LSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALS 198
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
KF N+Y+KNL +S+ D+ LK F E+GTITS VMRD G SK G
Sbjct: 199 NA----------KFN--NVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFG 246
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F + A+ A+ +NGK K YV A +K ER L+ + Q
Sbjct: 247 FVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQ 294
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/570 (70%), Positives = 460/570 (80%), Gaps = 4/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNF PLN K IR+MYS+RDPS R+SG+ NIFIKNLDK+IDHK LHDTFS+FGN
Sbjct: 93 AARALELLNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGN 152
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD GQSKGFGFVQ++ E+AQ+AI LNGMLINDK V+VG FLRKQERE
Sbjct: 153 ILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSV 212
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL ESTT EDL KIFG YG ITSAV+M DGKS+CFGF+NF++ DDAA
Sbjct: 213 DKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAA 272
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE LNGKK +D+EWYVG+AQKKSERE ELK +FEQ+MK+ DK+QGLNLY+KNL DSI
Sbjct: 273 RAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSI 332
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L ELFS +G ITSCK+MRD +G+SKGSGFVAFST EEAS+AL EMNGKMI KPLY
Sbjct: 333 GDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 392
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQRKE+R+A LQAQFSQ+RPV M PS+ PR+PMYPP + LGQQ YGQAPPAI+PP
Sbjct: 393 VAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPM-APLGQQLFYGQAPPAIMPP 451
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFG+QQQLVPGMRP GA MPN+FVPVV QGQQG RPG RR Q QQ Q
Sbjct: 452 QPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQ 511
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP NM D P G + DMG G P RDA + P PI L++ALA
Sbjct: 512 MLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG-GFPVRDAGL-SPAPIGTLTSALA 569
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGESLYPLVE LE++ AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM
Sbjct: 570 NANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAM 629
Query: 547 EVLRSVAQQQ-ANNPADQLASLSLNENLVS 575
+VLR+VAQQ AN P QLA+LSL + ++S
Sbjct: 630 DVLRNVAQQHNANTPTSQLAALSLGDAIIS 659
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+ S TD L ++F + G + S V RD +S + +VNF N DAA+A+E
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + V + + + N++IKNL +ID + L
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKAIDHKTL 143
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 312 RKEER 316
RK+ER
Sbjct: 204 RKQER 208
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAE 294
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V F+ P +A+RAL
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N + KP+ V + R R
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSR 122
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/573 (69%), Positives = 476/573 (83%), Gaps = 12/573 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNFTP+N K IRIMYS+RDPS RKSGTGNIFIKNLDKSID+KAL+DTF +FGN
Sbjct: 89 AARALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGN 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SG+S+G+GFVQFE ESAQ+AIDKLNGMLINDK+VFVG F+RKQ+RE V+
Sbjct: 149 ILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVS 208
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF+NV+VKNL ++ TD++LK++FG+YGTITSAVVMRD DGKS+CFGFVNFENAD AA
Sbjct: 209 SNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAA 268
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGK F+D+E YVG+AQKKSERE ELK +FE+ ++E +KFQ NLY+KNL ++I
Sbjct: 269 QAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENI 328
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ELF+E+G ITSCKVMRD +G+S+GSGFVAF + E+A+RAL EMNGKM+ SKPLY
Sbjct: 329 DDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLY 388
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+R+A+LQAQFSQMRPVAM PSV PRMPM+PPG G+GQQ YGQ PPA I P
Sbjct: 389 VALAQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINP 448
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QAGF +QQ L+PGMRP G PMPNF +P+V QGQQ QRP GRR G QQP+P+ Q
Sbjct: 449 QAGFAFQQPLMPGMRP-GGPMPNFMMPMVQQGQQPQRPAGRRAGG----MQQPMPMGGQQ 503
Query: 427 --MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
P G YRYP GR M D P G+++P +MG G+P R+A+ QP+PI AL+TA
Sbjct: 504 QVFPRGGRGYRYPTGRGMPD-PGMHSVGAVMPPSYEMG-GMPMREAAP-QPVPIGALATA 560
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LANA P+QQR +LGE+LYPLVEQLER+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAE
Sbjct: 561 LANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAE 620
Query: 545 AMEVLRSVAQQQANNPA--DQLASLSLNENLVS 575
AMEVLRS Q +N + QLA+LSLN+ +VS
Sbjct: 621 AMEVLRSAQHLQQSNVSTEQQLANLSLNDGVVS 653
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEA 191
+++V +L ES D L +F + G + S V RD + KS + +VN+ N DAA+A+E
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + + + G N++IKNL SID++ L
Sbjct: 96 LNFTPINGKPIRIMYSNRDPSSRKSGTG----------------NIFIKNLDKSIDNKAL 139
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F FG I SCK+ DPSG S+G GFV F E A A+ ++NG +I K ++V
Sbjct: 140 YDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFV 199
Query: 312 RKEER 316
RK++R
Sbjct: 200 RKQDR 204
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L +S+ D +L ++FS+ G + S +V RD S S G +V ++ +A+R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/570 (70%), Positives = 459/570 (80%), Gaps = 4/570 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNF PLN K IR+MYS+RDPS R+SG+ NIFIKNLDK+IDHK LHDTFS+FGN
Sbjct: 93 AARALELLNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGN 152
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD GQSKGFGFVQ++ E+AQ+AI LNGMLINDK V+VG FLRKQERE
Sbjct: 153 ILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSV 212
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL ESTT EDL KIFG YG ITSAV+M DGKS+CFGF+NF++ DDAA
Sbjct: 213 DKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAA 272
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE LNGKK +D+EWYVG+AQKKSERE ELK +FEQ+MK+ DK+QGLNLY+KNL DSI
Sbjct: 273 RAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSI 332
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L ELFS +G ITSCK+MRD +G+SKGSGFVAFST EEAS+AL EMNGKMI KPLY
Sbjct: 333 GDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 392
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQRKE+R+ LQAQFSQ+RPV M PS+ PR+PMYPP + LGQQ YGQAPPAI+PP
Sbjct: 393 VAFAQRKEDRKVMLQAQFSQVRPVPMTPSMAPRLPMYPPM-APLGQQLFYGQAPPAIMPP 451
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFG+QQQLVPGMRP GA MPN+FVPVV QGQQG RPG RR Q QQ Q
Sbjct: 452 QPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQ 511
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP NM D P G + DMG G P RDA + P PI L++ALA
Sbjct: 512 MLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG-GFPVRDAGL-SPAPIGTLTSALA 569
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGESLYPLVE LE++ AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM
Sbjct: 570 NANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAM 629
Query: 547 EVLRSVAQQQ-ANNPADQLASLSLNENLVS 575
+VLR+VAQQ AN P QLA+LSL + ++S
Sbjct: 630 DVLRNVAQQHNANTPTSQLAALSLGDAIIS 659
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+ S TD L ++F + G + S V RD +S + +VNF N DAA+A+E
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + V + + + N++IKNL +ID + L
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKAIDHKTL 143
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 312 RKEER 316
RK+ER
Sbjct: 204 RKQER 208
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAE 294
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V F+ P +A+RAL
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N + KP+ V + R R
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSR 122
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/572 (68%), Positives = 470/572 (82%), Gaps = 3/572 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARAL++LNFTP+N K IRIMYS+RDPS+RKSGT NIFIKNLDKSID+KAL+DTF F
Sbjct: 92 ADAARALEMLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVF 151
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD SG+SKG+GFVQ+E E+AQ AIDKLNGML+NDK+V+VG F+RKQER+
Sbjct: 152 GNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDN 211
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ KFNNV+VKNL E+TT++DLK+IFG++GTITSAVVMR+GDG+SKCFGFVNFE+ DD
Sbjct: 212 SPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDD 271
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA+AV+ LNGKKFDD+EWYVG+AQKKSERE ELK +FE+ ++E DK+Q NLY+KNL D
Sbjct: 272 AAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDD 331
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S+DD+KL+ELF+E+GTITSCKVMRD +G+S+GSGFVAF + E+ASRALAEMN KM+ SKP
Sbjct: 332 SVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKP 391
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
LYVA+AQRKE+R+ARLQAQFSQ+RPV + PSV PRMPM+PPG G+GQQ YGQ PPA I
Sbjct: 392 LYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFI 451
Query: 365 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
Q GFG+QQ L+PGMRP PMPNF +P+V QGQQ QRP GRR AG Q
Sbjct: 452 NTQPGFGFQQPLMPGMRPGAGPMPNFIMPMVQQGQQPQRPAGRR-AGAGGMQQPMPMGQQ 510
Query: 425 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
M G YRYP GR M D G ++P P +MG G+P RDA+ QP+PI AL+TA
Sbjct: 511 QMMARGGRGYRYPTGRGMPDPAMHGVGGGVMPSPYEMG-GMPMRDAAASQPVPIGALATA 569
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LANA+P+QQR +LGE+LYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAE
Sbjct: 570 LANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 629
Query: 545 AMEVLRSVAQQQAN-NPADQLASLSLNENLVS 575
AMEVLR+ Q Q N P QLASLSLN+ +VS
Sbjct: 630 AMEVLRTAQQIQTNATPEQQLASLSLNDGVVS 661
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 161/286 (56%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD S+ L D F+ G ++S ++ D + +S G+ +V + + A A++
Sbjct: 41 SLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEM 100
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN IN K + + + R+ K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 101 LNFTPINGKPIRIMY----SNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 156
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV +E + A A++ LNG +D++ YVG +K ER+ GQ
Sbjct: 157 CKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNS-PGQ 215
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL ++ ++ LKE+F +FGTITS VMR+ G SK GFV
Sbjct: 216 V---------KFN--NVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFV 264
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F +P++A++A+ E+NGK K YV AQ+K ER L+ +F +
Sbjct: 265 NFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEK 310
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L S+ D +L ++F++ G + S +V RD + S G +V +S+P +A+R
Sbjct: 37 FPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAAR 96
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I KP+ + + R R
Sbjct: 97 ALEMLNFTPINGKPIRIMYSNRDPSLR 123
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/571 (69%), Positives = 460/571 (80%), Gaps = 8/571 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL+VLNF LNNK IR+MYS+RDPS R+SG+ NIFIKNLDK+ID+K LH+TFSSFG
Sbjct: 100 AARALEVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGT 159
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D +GQSKGFGFVQ+E +E+AQNAI LNGMLINDK VFVG FLRKQER+
Sbjct: 160 ILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSF 219
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL ESTT EDL K+FGEYG+ITSAVVM DGKS+CFGF+NFEN D A+
Sbjct: 220 DKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAAS 279
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGKK +D+EWYVG+AQKKSERE ELK +FEQ++K+ DK+QGLNLY+KNL DSI
Sbjct: 280 RAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSI 339
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L+ELFS FG ITS KVMRD +G+SKGSGFVAFST EEAS+AL EMNGKMI KPLY
Sbjct: 340 GDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 399
Query: 307 VAVAQRKEERRARLQAQFSQMRP-VAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
VA AQRKE+R+A LQAQFSQMRP V M P++ PR+PMYPP QQ YGQAPPA+IP
Sbjct: 400 VAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAP---QQLFYGQAPPAMIP 456
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
PQ GFG+QQQLVPGMRP G MPN+FVPVV QGQQG RPG RRGAG Q P
Sbjct: 457 PQPGFGFQQQLVPGMRPGGPHMPNYFVPVVQQGQQGPRPGMRRGAGAQGQQPV--PPFQQ 514
Query: 426 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
Q+ PRG YRYP GRNM + P G + DMG G P RDA+V I L++AL
Sbjct: 515 QIVPRGRMYRYPTGRNMPEAPAMPGVAGGMIQAYDMG-GFPVRDAAVSPAAQIGTLTSAL 573
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA+PEQQRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESP+ALK+KVAEA
Sbjct: 574 ANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSKVAEA 633
Query: 546 MEVLRSVAQQQ-ANNPADQLASLSLNENLVS 575
M+VLR+VA QQ N P +QLA+LSL E ++S
Sbjct: 634 MDVLRNVAHQQNPNTPTNQLAALSLTEGIIS 664
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +L+ S+ L++ FS G ++S ++ D S +S G+ +V F N A A+
Sbjct: 45 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARAL 104
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN ++N+K + V + R+ + ++ N+F+KNLD++ ++ L + F +GTI
Sbjct: 105 EVLNFAVLNNKPIRVMY----SNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTI 160
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK FGFV +E + A A+++LNG +D+ +VG +K ER+
Sbjct: 161 LSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDH--- 217
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ DK + N+++KNL +S E L ++F E+G+ITS VM G S+ G
Sbjct: 218 ---------SFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFG 268
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F+ F P+ ASRA+ E+NGK I K YV AQ+K ER L+ +F Q
Sbjct: 269 FINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQ 316
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/573 (68%), Positives = 471/573 (82%), Gaps = 18/573 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNFTP+N K IRIMYS+RDPS RKSGTGNIFIKNLDKSID+KAL+DTF +FGN
Sbjct: 89 AARALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGN 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SG+S+G+GFVQFE ESAQ+AIDKLNGMLINDK+VFVG F+RKQ+RE V+
Sbjct: 149 ILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVS 208
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF+NV+VKNL ++ TD++LK++FG+YGTITSAVVMRD DGKS+CFGFVNFENAD AA
Sbjct: 209 SNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAA 268
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGK F+D+E YVG+AQKKSERE ELK +FE+ ++E +KFQ NLY+KNL ++I
Sbjct: 269 QAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENI 328
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ELF+E+G ITSCKVMRD +G+S+GSGFVAF + E+A+RAL EMNGKM+ SKPLY
Sbjct: 329 DDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLY 388
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+R+A+LQAQFSQMRPVAM PSV PRMPM+PPG G+GQQ YGQ PPA I P
Sbjct: 389 VALAQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINP 448
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
QQ L+PGMRP G PMPNF +P+V QGQQ QRP GRR G QQP+P+ Q
Sbjct: 449 ------QQPLMPGMRP-GGPMPNFMMPMVQQGQQPQRPAGRRAGG----MQQPMPMGGQQ 497
Query: 427 --MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
P G YRYP GR M D P G+++P +MG G+P R+A+ QP+PI AL+TA
Sbjct: 498 QVFPRGGRGYRYPTGRGMPD-PGMHSVGAVMPPSYEMG-GMPMREAAP-QPVPIGALATA 554
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LANA P+QQR +LGE+LYPLVEQLER+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAE
Sbjct: 555 LANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAE 614
Query: 545 AMEVLRSVAQQQANNPA--DQLASLSLNENLVS 575
AMEVLRS Q +N + QLA+LSLN+ +VS
Sbjct: 615 AMEVLRSAQHLQQSNVSTEQQLANLSLNDGVVS 647
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEA 191
+++V +L ES D L +F + G + S V RD + KS + +VN+ N DAA+A+E
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + + + G N++IKNL SID++ L
Sbjct: 96 LNFTPINGKPIRIMYSNRDPSSRKSGTG----------------NIFIKNLDKSIDNKAL 139
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F FG I SCK+ DPSG S+G GFV F E A A+ ++NG +I K ++V
Sbjct: 140 YDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFV 199
Query: 312 RKEER 316
RK++R
Sbjct: 200 RKQDR 204
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L +S+ D +L ++FS+ G + S +V RD S S G +V ++ +A+R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/570 (69%), Positives = 454/570 (79%), Gaps = 6/570 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNF PLN K IR+MYS+RDPS R+SG+ NIFIKNLDK+IDHK LHDTFS+FGN
Sbjct: 93 AARALELLNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGN 152
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD GQSKGFGFVQ++ E+AQ+AI LNGMLINDK V+VG FLRKQERE
Sbjct: 153 ILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSV 212
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL ESTT EDL KIFG YG ITSAV+M DGKS+CFGF+NF++ DDAA
Sbjct: 213 DKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAA 272
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE LNGKK +D+EWYVG+AQKKSERE ELK +FEQ+MK+ DK+QGLNLY+KNL DSI
Sbjct: 273 RAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSI 332
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L ELFS +G ITSCK+MRD +G+SKGSGFVAFST L EMNGKMI KPLY
Sbjct: 333 GDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTLPFIQ--LTEMNGKMISGKPLY 390
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQRKE+R+A LQAQFSQ+RPV M PS+ PR+PMYPP + LGQQ YGQAPPAI+PP
Sbjct: 391 VAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPM-APLGQQLFYGQAPPAIMPP 449
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFG+QQQLVPGMRP GA MPN+FVPVV QGQQG RPG RR Q QQ Q
Sbjct: 450 QPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQ 509
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP NM D P G + DMG G P RDA + P PI L++ALA
Sbjct: 510 MLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG-GFPVRDAGL-SPAPIGTLTSALA 567
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGESLYPLVE LE++ AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM
Sbjct: 568 NANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAM 627
Query: 547 EVLRSVAQQQ-ANNPADQLASLSLNENLVS 575
+VLR+VAQQ AN P QLA+LSL + ++S
Sbjct: 628 DVLRNVAQQHNANTPTSQLAALSLGDAIIS 657
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+ S TD L ++F + G + S V RD +S + +VNF N DAA+A+E
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + V + + + N++IKNL +ID + L
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKAIDHKTL 143
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 312 RKEER 316
RK+ER
Sbjct: 204 RKQER 208
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAE 294
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V F+ P +A+RAL
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N + KP+ V + R R
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSR 122
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/550 (76%), Positives = 469/550 (85%), Gaps = 23/550 (4%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L AARALDVLNFTPLN K IRIMYSHRDPSIRKSGTGNIFIKNLDK IDHKALHDTFS+
Sbjct: 220 LEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSA 279
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD SG SKG GFVQF+++E+AQ AIDKLNGML+NDKQVFVG F+RKQERE
Sbjct: 280 FGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERE 339
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ K KFNNVFVKN+ E T+EDL +IFGE+G ITS VVMRDGDGKSKCFGFVNFEN D
Sbjct: 340 STINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVD 399
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DAA +VEALNG+KFDD+EWYVGKAQKKSERE ELK +FEQ MKE VDKFQG NLYIKNL
Sbjct: 400 DAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLD 459
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSI D+KLKELF++FGTITSCKVMRDP+G+S+GSGFVAFS+PEEASRALAEMN KM+VSK
Sbjct: 460 DSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSK 519
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKE+RRARLQAQFSQMRPV M PSV PR+PMYPP GLGQQ YGQAPPAI
Sbjct: 520 PLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMFYGQAPPAI 579
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPI 422
IPPQ GFGYQQQLVPGMRPAG PMPNFFVP+V QGQQGQRPGGRR GA P+QQTQQ +P+
Sbjct: 580 IPPQPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQRPGGRRAGAVPMQQTQQQVPL 639
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
M QM PRG +RYP GR + D +P+P ++ Q +P+ AL+
Sbjct: 640 MQQQMLPRGRVFRYPPGRGLSD----------VPMP------------AISQSIPVGALA 677
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
TALANA P +QRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESP+ALKAKV
Sbjct: 678 TALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKV 737
Query: 543 AEAMEVLRSV 552
AEAMEVLR+V
Sbjct: 738 AEAMEVLRNV 747
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 164/301 (54%), Gaps = 19/301 (6%)
Query: 29 SHRDPSIRKS--GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG-QSKGFGF 85
++ +P+I S + ++++ +LD ++ LHD FS ++S ++ D + +S G+G+
Sbjct: 155 TNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGY 214
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTD 145
V + + E A A+D LN +N K + + + R+ K+ N+F+KNLD+
Sbjct: 215 VNYTDLEDAARALDVLNFTPLNGKPIRIMY----SHRDPSIRKSGTGNIFIKNLDKGIDH 270
Query: 146 EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 205
+ L F +G I S V D G SK GFV F++ + A KA++ LNG +D++ +VG
Sbjct: 271 KALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVG 330
Query: 206 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 265
+K ERE T++K + N+++KN+ + + +E L +F EFG ITS
Sbjct: 331 PFVRKQERE------------STINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVV 378
Query: 266 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325
VMRD G SK GFV F ++A+ ++ +NG+ K YV AQ+K ER L+++F
Sbjct: 379 VMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFE 438
Query: 326 Q 326
Q
Sbjct: 439 Q 439
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEE 287
+F +LY+ +L +++D +L +LFS+ G + S +V RD S S G G+V +S P++
Sbjct: 26 QFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQD 83
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/575 (68%), Positives = 464/575 (80%), Gaps = 10/575 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARAL++LNFTP+N K IRIMYS+RDPS RKSG NIFIKNLDKSID+KAL+DTFS+F
Sbjct: 94 ADAARALEMLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAF 153
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+AT+ SG+SKG+GFVQ+E ESAQNAI++LNGML+NDK+V+VG F+RKQERE
Sbjct: 154 GNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQEREN 213
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
V KFNNV+VKNL ESTT+++LK++FG +G ITS +V+R DGKS+CFGFVNFEN DD
Sbjct: 214 VFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDD 273
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A AVE LNGKKFDD+E YVG+AQKKSERE +LK FE++ KET D+ QG NLY+KNL
Sbjct: 274 AVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDG 333
Query: 245 SI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
S+ DDEKLKELF+EFGTITSCKVMRD +G++KGSGFVAF + E+A+RAL MNGKM+ SK
Sbjct: 334 SVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSK 393
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKEERRARLQAQFSQMRPV M P V PRMPMYPPG G+GQQ YGQ PPA
Sbjct: 394 PLYVALAQRKEERRARLQAQFSQMRPV-MPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAF 452
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPI 422
+ PQ G+G+QQ ++PGMRP APMPNF +P+V QGQQ QRP GRR GAG + QQP+P+
Sbjct: 453 VNPQPGYGFQQHMIPGMRPGVAPMPNFVMPMVQQGQQPQRPSGRRAGAGGM---QQPMPM 509
Query: 423 MPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 480
QM PRG YRY GR M + F G G M P +MG P D Q + A
Sbjct: 510 GHQQMVPRGGRGGYRYASGRGMPEAAF-RGVGGMAPSLYEMGRMTP-GDTGAPQQVSSGA 567
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L++ALAN+ PEQQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALK+
Sbjct: 568 LASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKS 627
Query: 541 KVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
KVAEAMEVLRS QQQ N PADQLA+LSL++ V+
Sbjct: 628 KVAEAMEVLRSAQQQQTNVPADQLAALSLSDGFVA 662
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 154/286 (53%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD S+ L D FS G+++S ++ D + S G+ +V F + A A++
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + + R+ + K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 103 LNFTPVNGKPIRIMY----SNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILS 158
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V + G+SK +GFV +E + A A+ LNG +D++ YVG +K ERE
Sbjct: 159 CKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS- 217
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL +S ++ LKELF FG ITS V+R G S+ GFV
Sbjct: 218 ---------PKFN--NVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFV 266
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F P++A A+ ++NGK K LYV AQ+K ER +L+ F +
Sbjct: 267 NFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEK 312
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/575 (68%), Positives = 464/575 (80%), Gaps = 10/575 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARAL++LNFTP+N K IRIMYS+RDPS RKSG NIFIKNLDKSID+KAL+DTFS+F
Sbjct: 94 ADAARALEMLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAF 153
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+AT+ SG+SKG+GFVQ+E ESAQNAI++LNGML+NDK+V+VG F+RKQERE
Sbjct: 154 GNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQEREN 213
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
V KFNNV+VKNL ESTT+++LK++FG +G ITS +V+R DGKS+CFGFVNFEN DD
Sbjct: 214 VFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDD 273
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A AVE LNGKKFDD+E YVG+AQKKSERE +LK FE++ KET D+ QG NLY+KNL
Sbjct: 274 AVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDG 333
Query: 245 SI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
S+ DDEKLKELF+EFGTITSCKVMRD +G++KGSGFVAF + E+A+RAL MNGKM+ SK
Sbjct: 334 SVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSK 393
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKEERRARLQAQFSQMRPV M P V PRMPMYPPG G+GQQ YGQ PPA
Sbjct: 394 PLYVALAQRKEERRARLQAQFSQMRPV-MPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAF 452
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPI 422
+ PQ G+G+QQ ++PGMRP APMPNF +P+V QGQQ QRP GRR GAG + QQP+P+
Sbjct: 453 VNPQPGYGFQQHMIPGMRPGVAPMPNFVMPMVQQGQQPQRPSGRRAGAGGM---QQPMPM 509
Query: 423 MPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 480
QM PRG YRY GR M + F G G M P +MG P D Q + A
Sbjct: 510 GHQQMVPRGGRGGYRYASGRGMPEAAF-RGVGGMAPSLYEMGRMTP-GDTGAPQQVSSGA 567
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L++ALAN+ PEQQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALK+
Sbjct: 568 LASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKS 627
Query: 541 KVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
KVAEAMEVLRS QQQ N PADQLA+LSL++ V+
Sbjct: 628 KVAEAMEVLRSAQQQQTNVPADQLAALSLSDGFVA 662
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 17/285 (5%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD S+ L D FS G+++S ++ D + S G+ +V F + A A++ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N +N K + + + R+ + K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 104 NFTPVNGKPIRIMY----SNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSC 159
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V + G+SK +GFV +E + A A+ LNG +D++ YVG +K ERE
Sbjct: 160 KVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS-- 217
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
KF N+Y+KNL +S ++ LKELF FG ITS V+R G S+ GFV
Sbjct: 218 --------PKFN--NVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVN 267
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F P++A A+ ++NGK K LYV AQ+K ER +L+ F +
Sbjct: 268 FENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEK 312
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/571 (66%), Positives = 456/571 (79%), Gaps = 4/571 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARAL++LNFTP+N + IRIMYS+RDPS+RKSGT NIFIKNLDKSID+KALHDTF F
Sbjct: 177 ADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVF 236
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD +G+SKG+GFVQ+E E+A AI+KLNGML+NDK+V+VG F+RKQER+
Sbjct: 237 GNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDN 296
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
KFNNV+VKNL E+TT++DLK+IFG++GTITS VVMRDGDG+SKCFGFVNFE+ D+
Sbjct: 297 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDE 356
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AV+ LNGKKF D+EWYVG+AQKKSERE ELK +FE+ ++E DK+Q NLY+KNL D
Sbjct: 357 AALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDD 416
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
++DDEKL+ELF+EFGTITSCKVMRD +G S+GSGFVAF + ++ASRALAEMN KM+ +KP
Sbjct: 417 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKP 476
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
LYVA+AQRKE+R+ARLQAQFSQMRPV M +V PRM M PPG +GQQ YGQ PPA I
Sbjct: 477 LYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQ-PPAFI 534
Query: 365 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
PQ GFG+QQ +PGMRP GAPMPNF +P+V QGQQ QRP GRR Q +
Sbjct: 535 NPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAGGMQQSMQMGQQQ 594
Query: 425 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
G YRYP GR M D P G G ++ P +MG G+P RDA QP+PI AL++A
Sbjct: 595 MMGRGGGRGYRYPTGRGMPD-PAMHGVGGVMTSPYEMG-GMPMRDAGASQPVPIGALASA 652
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LAN+ PE QR +LGE+LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAE
Sbjct: 653 LANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAE 712
Query: 545 AMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AMEV RS Q +P QLASLSLN+ L+S
Sbjct: 713 AMEVFRSAQQHTNQSPEQQLASLSLNDGLIS 743
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 158/286 (55%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD S+ L D F+ G ++S ++ D S +S G+ +V + A A++
Sbjct: 126 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 185
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN IN + + + + R+ K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 186 LNFTPINGRPIRIMY----SNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILS 241
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV +E + A A+E LNG +D++ YVG +K ER+ G
Sbjct: 242 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNS-PGS 300
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL ++ ++ LKE+F +FGTITS VMRD G SK GFV
Sbjct: 301 V---------KFN--NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 349
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F +P+EA+ A+ ++NGK K YV AQ+K ER L+ +F +
Sbjct: 350 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEK 395
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L S+ D +L ++F++ G + S +V RD S S G +V ++TP +A+R
Sbjct: 122 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 181
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I +P+ + + R R
Sbjct: 182 ALEMLNFTPINGRPIRIMYSNRDPSLR 208
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/579 (67%), Positives = 466/579 (80%), Gaps = 14/579 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RAL+ LNF LN ++IR+MYS RDPS+RKSG GNIFIKNLDKSIDHKALH+TFS+FG
Sbjct: 93 ASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP 152
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SGQSKG+GFVQ++ E+AQ AIDKLNGML+NDKQV+VG F+ K +R+
Sbjct: 153 ILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG 212
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KF NV+VKNL ES +DE+L K+FGE+G TS V+MRDG+GKSK FGFVNFEN+DDAA
Sbjct: 213 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 272
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ALNGK FDD+EW+VGKAQKKSERE ELK +FEQ++KE DK QG NLY+KNL +S+
Sbjct: 273 RAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESV 332
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KL+E F+ FGTITSCKVMRDP+G+S+GSGFVAFSTPEEASRA+ EMNGKMIV+KPLY
Sbjct: 333 TDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLY 392
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+R+ARLQAQFSQMRPV M P+V PRM MYPPG +GQQ YGQ PPA+IPP
Sbjct: 393 VALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPP 452
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQLVPGMRP G+PMPNFF+P++ QGQQ Q+ ++ ++ + Q
Sbjct: 453 QPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQQQRPGGGRRGGALPQPQ 512
Query: 427 MP---------PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM--GAGIPRRDASVGQP 475
P PRG YRYP R++ P +ML VP D+ G G+ RD+ Q
Sbjct: 513 QPSPMMQQQMHPRGRMYRYPQ-RDVNTMPGL--TPNMLSVPYDVSSGGGVHHRDSPASQS 569
Query: 476 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 535
+PI AL+T LANA+PEQQRT+LGE+LYPLVEQLE ++AAKVTGMLLEMDQTEVLHLLESP
Sbjct: 570 VPIGALATQLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESP 629
Query: 536 EALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 574
EALKAKV EAM+VLRSVAQQQA ADQLASLSL +N+V
Sbjct: 630 EALKAKVTEAMDVLRSVAQQQAGGAADQLASLSLGDNIV 668
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 165/291 (56%), Gaps = 17/291 (5%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
+ GT ++++ +LD ++ L + FS G ++S ++ D + +S G+G+V + + A
Sbjct: 35 QQGTTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 94
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
A+++LN M +N + + V + +R K+ N+F+KNLD+S + L + F +
Sbjct: 95 RALNELNFMALNGRAIRVMYSVRDPSLR----KSGVGNIFIKNLDKSIDHKALHETFSAF 150
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S V D G+SK +GFV ++ + A +A++ LNG +D++ YVG K +R+
Sbjct: 151 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRD- 209
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
+ +K + N+Y+KNL +S+ DE+L ++F EFG TSC +MRD G SK
Sbjct: 210 -----------PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK 258
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G GFV F ++A+RA+ +NGK K +V AQ+K ER L+ +F Q
Sbjct: 259 GFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 309
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 140/234 (59%), Gaps = 16/234 (6%)
Query: 6 SAARALDVLNFTPLNNKSIRIM-YSH---RDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
+A RA+D LN LN+K + + + H RDPS K N+++KNL +S+ + L+ F
Sbjct: 179 AAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVF 238
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
FG SC I DG G+SKGFGFV FEN + A A+D LNG +DK+ FVG +K E
Sbjct: 239 GEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSE 298
Query: 122 RET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
RET A K++ +N++VKNLDES TD+ L++ F +GTITS VMRD G
Sbjct: 299 RETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTG 358
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
S+ GFV F ++A++A+ +NGK + YV AQ+K +R+ L+ QF Q
Sbjct: 359 VSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQ 412
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/576 (68%), Positives = 470/576 (81%), Gaps = 12/576 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RAL+ LNF LN ++IR+MYS RDPS+RKSG GNIFIKNLDKSIDHKALH+TFS+FG
Sbjct: 99 ASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP 158
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SGQSKG+GFVQ++ E+AQ AIDKLNGML+NDKQV+VG F+ K +R+
Sbjct: 159 ILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG 218
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KF NV+VKNL ES +DE+L K+FGE+G TS V+MRDG+GKSK FGFVNFEN+DDAA
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 278
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ALNGK FDD+EW+VGKAQKKSERE ELK +FEQ++KE DK QG NLY+KNL +S+
Sbjct: 279 RAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESV 338
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+KL+E F+ FGTITSCKVMRDPSG+S+GSGFVAFSTPEEA+RA+ EMNGKMIV+KPLY
Sbjct: 339 TDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLY 398
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+R+ARLQAQFSQMRPV M P+V PRM MYPPG +GQQ YGQ PPA+I P
Sbjct: 399 VALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMI-P 457
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVV------SQGQQGQRPGGRRGAGPVQQTQQPL 420
Q GFGYQQQLVPGMRP G+PMPNFF+P++ Q QQ Q+ G G + Q QQP
Sbjct: 458 QPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPS 517
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM--GAGIPRRDASVGQPMPI 478
P+M QM PRG YRYP R++ P +ML VP D+ G G+ RD+ QP+PI
Sbjct: 518 PMMQQQMHPRGRMYRYPQ-RDVNTMPGP--TQNMLSVPYDVSSGGGVHHRDSPTSQPVPI 574
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
AL+T LANA+PEQQRT+LGE+LYPLVEQLE ++AAKVTGMLLEMDQTEVLHLLESPEAL
Sbjct: 575 VALATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEAL 634
Query: 539 KAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 574
KAKV EAM+VLRSVAQQQA ADQLASLSL +N+V
Sbjct: 635 KAKVTEAMDVLRSVAQQQAGGAADQLASLSLGDNIV 670
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 164/291 (56%), Gaps = 17/291 (5%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
+ GT ++++ +LD ++ L + F+ G ++S ++ D + +S G+G+V + + A
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
A+++LN M +N + + V + +R K+ N+F+KNLD+S + L + F +
Sbjct: 101 RALNELNFMALNGRAIRVMYSVRDPSLR----KSGVGNIFIKNLDKSIDHKALHETFSAF 156
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S V D G+SK +GFV ++ + A A++ LNG +D++ YVG K +R+
Sbjct: 157 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRD- 215
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
+ +K + N+Y+KNL +S+ DE+L ++F EFG TSC +MRD G SK
Sbjct: 216 -----------PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK 264
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G GFV F ++A+RA+ +NGK K +V AQ+K ER L+ +F Q
Sbjct: 265 GFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/564 (68%), Positives = 459/564 (81%), Gaps = 24/564 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA+ LN+ PL K IR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFSSFGN
Sbjct: 90 AARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTA 209
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVVM+DG+GKSK FGFVNFENADDAA
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 269
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ +KE DKFQ NLY+KNL SI
Sbjct: 270 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 329
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+TPEEA+ A+++++GKMI SKPLY
Sbjct: 330 SDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 389
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RR RLQAQFSQ+RPVAM PSV PRMP+YPPG G+GQQ YGQAPPA+IPP
Sbjct: 390 VAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPP 449
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q G+GYQQQLVPGMRP G P+P+FF+P+V QQ G R G +Q +QQ P+M Q
Sbjct: 450 QPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPG--GGRRPGGIQHSQQQNPMMQQQ 507
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG +RYP GR G +P P DMG + P+ I AL++ L+
Sbjct: 508 MHPRGRMFRYPQGR---------GGSGDVP-PYDMGNNM---------PLTIGALASNLS 548
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 549 NATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 608
Query: 547 EVLRSVAQQQANNPADQLASLSLN 570
+VLRSVA A +QLASL+L+
Sbjct: 609 DVLRSVA---AGGATEQLASLNLS 629
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 157/289 (54%), Gaps = 17/289 (5%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNA 97
G ++++ +LD ++ L D F G +++ ++ D + +S G+G+V F N + A A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I +LN + + K + V + R+ ++ N+F+KNLDES + L F +G
Sbjct: 94 IQELNYIPLYGKPIRVMY----SHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V D G+SK +GFV + N + A KA+E LNG +D++ YVG ++ ER+
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD--- 206
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
T +K + N+Y+KNL +S D+ LK F E+G ITS VM+D G SKG
Sbjct: 207 ---------STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGF 257
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV F ++A+RA+ +NG K YV AQ+K ER L+ ++ Q
Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 126 AIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
A T+F N ++V +LD + TD L FG+ GT+ + V RD +S +G+VNF N
Sbjct: 28 ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP 87
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DAA+A++ LN + V + + + G N++IKNL
Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG----------------NIFIKNL 131
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+SID + L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 191
Query: 303 KPLYVAVAQRKEER 316
K +YV R++ER
Sbjct: 192 KQVYVGPFLRRQER 205
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/564 (68%), Positives = 459/564 (81%), Gaps = 24/564 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA+ LN+ PL K IR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFSSFGN
Sbjct: 74 AARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 133
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A
Sbjct: 134 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTA 193
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVVM+DG+GKSK FGFVNFENADDAA
Sbjct: 194 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 253
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ +KE DKFQ NLY+KNL SI
Sbjct: 254 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 313
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+TPEEA+ A+++++GKMI SKPLY
Sbjct: 314 SDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 373
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RR RLQAQFSQ+RPVAM PSV PRMP+YPPG G+GQQ YGQAPPA+IPP
Sbjct: 374 VAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPP 433
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q G+GYQQQLVPGMRP G P+P+FF+P+V QQ G R G +Q +QQ P+M Q
Sbjct: 434 QPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPG--GGRRPGGIQHSQQQNPMMQQQ 491
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG +RYP GR G +P P DMG + P+ I AL++ L+
Sbjct: 492 MHPRGRMFRYPQGR---------GGSGDVP-PYDMGNNM---------PLTIGALASNLS 532
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 533 NATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 592
Query: 547 EVLRSVAQQQANNPADQLASLSLN 570
+VLRSVA A +QLASL+L+
Sbjct: 593 DVLRSVA---AGGATEQLASLNLS 613
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 157/289 (54%), Gaps = 17/289 (5%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNA 97
G ++++ +LD ++ L D F G +++ ++ D + +S G+G+V F N + A A
Sbjct: 18 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 77
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I +LN + + K + V + R+ ++ N+F+KNLDES + L F +G
Sbjct: 78 IQELNYIPLYGKPIRVMY----SHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 133
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V D G+SK +GFV + N + A KA+E LNG +D++ YVG ++ ER+
Sbjct: 134 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD--- 190
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
T +K + N+Y+KNL +S D+ LK F E+G ITS VM+D G SKG
Sbjct: 191 ---------STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGF 241
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV F ++A+RA+ +NG K YV AQ+K ER L+ ++ Q
Sbjct: 242 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 290
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 126 AIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
A T+F N ++V +LD + TD L FG+ GT+ + V RD +S +G+VNF N
Sbjct: 12 ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP 71
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DAA+A++ LN + V + + + G N++IKNL
Sbjct: 72 QDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG----------------NIFIKNL 115
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+SID + L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++
Sbjct: 116 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 175
Query: 303 KPLYVAVAQRKEER 316
K +YV R++ER
Sbjct: 176 KQVYVGPFLRRQER 189
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/575 (69%), Positives = 464/575 (80%), Gaps = 10/575 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNF PLNNK IR+MYS+RDPS R+SG+ NIFIKNLDK+ID+K LHDTFS+FG
Sbjct: 91 AARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA 150
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD GQSKGFGFVQ+E +E AQ+A+ LNGMLINDK V+VG FLRKQER+
Sbjct: 151 ILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSF 210
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K +FNNVFVKNL ESTT EDL KIF EYG ITSAVVM DGKS+CFGF+NFE+ DDA
Sbjct: 211 DKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAV 270
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE LNGKK +D+EWY G+AQKKSERE +LK +FEQ+MK+ DK+QG NLY+KNL D I
Sbjct: 271 RAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 330
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L+ELFS FG ITSCKVMRD +G+SKGSGFVAFST EEAS+A+ EMNGKM+ KPLY
Sbjct: 331 SDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLY 390
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQRKEER+A LQAQFSQMRPV + PS+ PR+PMYPP + LGQQ YGQAPP ++PP
Sbjct: 391 VAFAQRKEERKAMLQAQFSQMRPVPITPSMTPRLPMYPPM-APLGQQLFYGQAPPPMMPP 449
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMPH 425
Q GFG+QQQLVPGMRP+GA MPN+FVPVV QGQQG RPG RR GAG VQ Q
Sbjct: 450 QPGFGFQQQLVPGMRPSGAHMPNYFVPVVQQGQQGPRPGMRRSGAGSVQGQQS-AQSYQQ 508
Query: 426 QMPPRGHAYRYP--LGRNMQDF-PF-DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL 481
QM PRG YRYP GRNM + P +GAG M+ P DMG G P RDA + PI L
Sbjct: 509 QMVPRGRVYRYPPGPGRNMPEVQPMAGVGAGGMIQ-PYDMG-GFPVRDAGLSPAAPIGTL 566
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
++ALANA+P+QQRTLLGESLYPLVE LE + AAKVTGMLLEMDQTEVLHLLESPEALK+K
Sbjct: 567 TSALANATPDQQRTLLGESLYPLVELLEHNQAAKVTGMLLEMDQTEVLHLLESPEALKSK 626
Query: 542 VAEAMEVLRSVAQQQ-ANNPADQLASLSLNENLVS 575
VAEAM+VLR+VAQQQ N P QLA LS+ ++++S
Sbjct: 627 VAEAMDVLRNVAQQQNPNAPTSQLAGLSMTDSIIS 661
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +L+ S+ L++ FS G ++S ++ D S +S G+ +V F N A A+
Sbjct: 36 TTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARAL 95
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN + +N+K + V + R+ + ++ N+F+KNLD++ ++ L F +G I
Sbjct: 96 EMLNFVPLNNKPIRVMY----SNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAI 151
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK FGFV +E + A A+++LNG +D+ YVG +K ER+
Sbjct: 152 LSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERD---- 207
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ DK + N+++KNL +S E L ++FSE+G ITS VM G S+ G
Sbjct: 208 --------NSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFG 259
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F+ F +P++A RA+ E+NGK I K Y AQ+K ER L+ +F Q
Sbjct: 260 FINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQ 307
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/572 (70%), Positives = 473/572 (82%), Gaps = 13/572 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA+ LN+ PLN K +R+MYSHRDPS+R+SG GNIFIKNLDKSIDHKALHDTFS FGN
Sbjct: 94 AARAIQELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGN 153
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D SGQSKG+GFVQ+E +ESAQ A+ +LNGML+NDKQV+VG FLR+QER++
Sbjct: 154 IISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTG 213
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KT F NV+VKNL ESTTD+DLK IFGE+G ITSAVVM+DG+GK K FGFVNFENADDAA
Sbjct: 214 NKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAA 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE+LNGK FDD+EW+VG+AQKKSERE ELK Q+EQ++KE DKFQ NLY+KNL DS+
Sbjct: 274 KAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKELF+ +GT+TSCKVMRDP+G+S+GSGFVAFSTPEEA++A++EM+GKMI +KPLY
Sbjct: 334 SDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLY 393
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VAVAQRKE+RRARLQAQFSQMRPVAM P V PRMP+YPPG G+GQ YGQAPP +I
Sbjct: 394 VAVAQRKEDRRARLQAQFSQMRPVAMPPPVGPRMPIYPPGGPGIGQPMFYGQAPPTMISS 453
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAG---PVQQTQQPLPIM 423
Q GFGYQQQLVPGMRP GAPM NFF+P+V QGQ QRPGGR G QQ Q P+
Sbjct: 454 QPGFGYQQQLVPGMRPGGAPMHNFFMPMVQQGQ--QRPGGRHPGGIQQSQQQQQVPMMQQ 511
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
HQM PRG +RYP GR P G +P +MG+ +P RD + Q +PI AL++
Sbjct: 512 QHQMHPRGRMFRYPQGRGSGGPPDVPGM-----LPYEMGSNMPLRDPVLSQHVPIGALAS 566
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
+LANA+PE QRTLLGE+LYPLVEQLE ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVA
Sbjct: 567 SLANAAPELQRTLLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 626
Query: 544 EAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
EAM+VLRSVA A A+QLASL+LN+NLVS
Sbjct: 627 EAMDVLRSVA---AGGSAEQLASLNLNDNLVS 655
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 159/289 (55%), Gaps = 17/289 (5%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNA 97
GT ++++ +LD ++ L D FS G ++S ++ D + +S G+G+V F + + A A
Sbjct: 38 GTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARA 97
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I +LN + +N K V V + R+ ++ N+F+KNLD+S + L F +G
Sbjct: 98 IQELNYIPLNGKPVRVMY----SHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGN 153
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V D G+SK +GFV +E + A KA+ LNG +D++ YVG ++ ER+
Sbjct: 154 IISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERD--- 210
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
T +K N+Y+KNL +S D+ LK +F EFG ITS VM+D G KG
Sbjct: 211 ---------STGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGF 261
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV F ++A++A+ +NGK K +V AQ+K ER L+ Q+ Q
Sbjct: 262 GFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQ 310
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 289
+F +LY+ +L ++ D +L + FS+ G + S +V RD + S G G+V F++P++A+
Sbjct: 36 QFGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAA 95
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
RA+ E+N + KP+ V + R R
Sbjct: 96 RAIQELNYIPLNGKPVRVMYSHRDPSVR 123
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/573 (69%), Positives = 455/573 (79%), Gaps = 10/573 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL+VLNF PLNNK IR+MYS+RDPS R+SG+ NIFIKNLDK ID+K+LH+TFSSFG
Sbjct: 94 AARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGT 153
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D GQSKGFGFVQ+E +E+AQNAI LNGMLINDK VFVG FLRKQER+
Sbjct: 154 ILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSF 213
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL ESTT EDL KIFGEYG ITSAVVM DGKS+CFGF+NFEN D A+
Sbjct: 214 DKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAAS 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGKK +D+EWYVG+AQKKSERE ELK +FEQ +K+ DK+QGLNLY+KNL DSI
Sbjct: 274 RAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSI 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L+ELFS FG ITSCKVMRD +G+SKGSGFVAFST EEAS+AL EMNGKMI KPLY
Sbjct: 334 GDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 393
Query: 307 VAVAQRKEERRARLQAQFSQMRP-VAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
VA AQRKE+R+A LQAQFSQMRP V M P++ PR+PMYPP QQ YGQAPPA+IP
Sbjct: 394 VAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAP---QQLFYGQAPPAMIP 450
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFF--VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
PQ GFG+QQQLVPGMRP G MPN+F V QGQQG RPG RRGAG Q P
Sbjct: 451 PQPGFGFQQQLVPGMRPGGPHMPNYFVPVVQHQQGQQGPRPGIRRGAGAQGQQPV--PPF 508
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
Q+ PRG YRYP GRNM + P G + DMG G P RDA++ I L++
Sbjct: 509 QQQIVPRGRMYRYPTGRNMPEAPAMPGVAGGMMQAYDMG-GFPVRDAALSPAAQIGTLTS 567
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
ALANA+PEQQRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESP+ALK+KVA
Sbjct: 568 ALANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSKVA 627
Query: 544 EAMEVLRSVAQQQ-ANNPADQLASLSLNENLVS 575
EAM+VL +VA QQ AN P QLA+LSL E ++S
Sbjct: 628 EAMDVLHNVAHQQNANTPTSQLAALSLTEGIIS 660
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 161/289 (55%), Gaps = 17/289 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +L+ S+ L++ FS G ++S ++ D S +S G+ +V F N A A+
Sbjct: 39 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARAL 98
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN +N+K + V + R+ + ++ N+F+KNLD+ ++ L + F +GTI
Sbjct: 99 EVLNFAPLNNKPIRVMY----SNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGTI 154
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK FGFV +E + A A+++LNG +D+ +VG +K ER+
Sbjct: 155 LSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDH--- 211
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ DK + N+++KNL +S E L ++F E+G ITS VM G S+ G
Sbjct: 212 ---------SFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFG 262
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
F+ F P+ ASRA+ E+NGK I K YV AQ+K ER L+ +F Q+
Sbjct: 263 FINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQI 311
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/575 (69%), Positives = 463/575 (80%), Gaps = 10/575 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA++ LNF PLNNK IR+MYS+RDPS R+SG+ NIFIKNLDK+ID+K LHDTFS+FG
Sbjct: 176 AARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA 235
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D GQSKGFGFVQ+E +ESAQ+A+ LNGMLINDK V+VG FLRKQER+ +
Sbjct: 236 ILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSS 295
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNNVFVKNL ESTT EDL K+F EYGTITSAVVM DGKS+CFGFVNFE+ DDAA
Sbjct: 296 DKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAA 355
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE LNGKK +D+EWYVG+AQKKSERE +LK +FEQ+MK+ DK+QG NLY+KNL D I
Sbjct: 356 RAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L+ELFS FG ITSCK+MRD +G+SKGSGFV+FST EEAS+AL EMNGKMI KPLY
Sbjct: 416 TDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLY 475
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQRKEER+A LQAQFSQMRPV M PS+ PR+PMYPP P+ LGQQ YGQAPPA++PP
Sbjct: 476 VAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPPMPT-LGQQLFYGQAPPAMMPP 534
Query: 367 QAGFGYQQQLVPGMRP-AGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
Q G+G+QQQLVPGMRP GA MPN+FVPVV GQQG RPG RR Q QQ
Sbjct: 535 QPGYGFQQQLVPGMRPGGGAHMPNYFVPVVQPGQQGPRPGMRRSGPGSAQGQQTPQPFQQ 594
Query: 426 QMPPRGHAYRYPLG-RNM---QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL 481
QM PRG YRYP G R+M Q P +G G M+ P DMG+ P RDA V PI L
Sbjct: 595 QMVPRGRVYRYPPGPRHMAEVQQMP-GVGVGGMV-QPYDMGS-FPVRDAGVSPAPPIGTL 651
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
++ALANA+PEQQRT+LGESLYPLVE+LE AAKVTGMLLEMDQTEVLHLLESPEALK+K
Sbjct: 652 TSALANATPEQQRTILGESLYPLVEKLEHQQAAKVTGMLLEMDQTEVLHLLESPEALKSK 711
Query: 542 VAEAMEVLRSVAQQQ-ANNPADQLASLSLNENLVS 575
VAEAM+VLR+VAQQQ N P QLA LSL++ ++S
Sbjct: 712 VAEAMDVLRNVAQQQNPNAPTSQLAGLSLSDGIIS 746
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 190
+++V +L+ + TD L ++F + G + S V RD + + S + +VN+ N DAA+A+E
Sbjct: 122 TSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAME 181
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
ALN +++ V + + + N++IKNL +ID++
Sbjct: 182 ALNFAPLNNKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKTIDNKT 225
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 226 LHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPF 285
Query: 311 QRKEER 316
RK+ER
Sbjct: 286 LRKQER 291
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L ++ D +L ELFS+ G + S +V RD S S G +V +S P +A+RA+
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N + +KP+ V + R R
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSR 205
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/571 (66%), Positives = 455/571 (79%), Gaps = 4/571 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARAL++LNFTP+N + IRIMYS+RDPS+RKSGT NIFIKNLDKSID+KAL+DTF F
Sbjct: 84 ADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVF 143
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD +G+SKG+GFVQ+E E+A AI+KLNGML+NDK+V+VG F+RKQER+
Sbjct: 144 GNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDN 203
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
KFNNV+VKNL E+TT++DLK+IFG++G ITS VVMRDGDG+SKCFGFVNFE+ D+
Sbjct: 204 SPGNVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDE 263
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AV+ LNGKKF D+EWYVG+AQKKSERE ELK +FE+ ++E DK+Q NLY+KNL D
Sbjct: 264 AALAVQDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDD 323
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
++DDEKL+ELF+EFGTITSCKVMRD +G S+GSGFVAF + ++ASRALAEMN KM+ +KP
Sbjct: 324 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKP 383
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
LYVA+AQRKE+R+ARLQAQFSQMRPV M +V PRM M PPG +GQQ YGQ PPA I
Sbjct: 384 LYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQ-PPAFI 441
Query: 365 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
PQ GFG+QQ +PGMRP GAPMPNF +P+V QGQQ QRP GRR Q +
Sbjct: 442 NPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAGGMQQSMQMGQQQ 501
Query: 425 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
G YRY GR M D P G G ++ P +MG G+P RDA QP+PI AL++A
Sbjct: 502 MLGRGGGRGYRYQTGRGMPD-PAMHGVGGVMTSPYEMG-GMPMRDAGESQPVPIGALASA 559
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LAN+ PE QR +LGE+LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAE
Sbjct: 560 LANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAE 619
Query: 545 AMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AMEVLRS Q +P QLASLSLN+ L+S
Sbjct: 620 AMEVLRSAQQHTNQSPEQQLASLSLNDGLIS 650
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 157/286 (54%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD S+ L D F+ G ++S ++ D S +S G+ +V + A A++
Sbjct: 33 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 92
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN IN + + + + R+ K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 93 LNFTPINGRPIRIMY----SNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 148
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV +E + A A+E LNG +D++ YVG +K ER+ G
Sbjct: 149 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNS-PGN 207
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL ++ ++ LKE+F +FG ITS VMRD G SK GFV
Sbjct: 208 V---------KFN--NVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFV 256
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F +P+EA+ A+ ++NGK K YV AQ+K ER L+ +F +
Sbjct: 257 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEK 302
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L S+ D +L ++F++ G + S +V RD S S G +V ++TP +A+R
Sbjct: 29 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 88
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I +P+ + + R R
Sbjct: 89 ALEMLNFTPINGRPIRIMYSNRDPSLR 115
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/575 (68%), Positives = 468/575 (81%), Gaps = 10/575 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARA+++LNFTP+N K IRIMYS+RDPS RKSG NIFIKNLDKSID+KAL DTFS+F
Sbjct: 94 ADAARAMEMLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAF 153
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCK+AT+ SG+SKG+GFVQ+E ESAQNAI++LNGML+NDK+V+VG F+RKQERE
Sbjct: 154 GTILSCKVATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQEREN 213
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
V KFNNV+VKNL ESTT+++LK++FG++G ITS +V+R DGKS+CFGFVNFEN DD
Sbjct: 214 VFGSPKFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDD 273
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA+AVE LNGKK DD+E YVG+AQKKSERE +LK +FE++ KET DK QG NLY+KNL
Sbjct: 274 AARAVEDLNGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDG 333
Query: 245 SI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
S+ DDEKLKELF+EFGTITSCKVMRD +G++KGSGFVAF + E+ASRAL MNGKM+ SK
Sbjct: 334 SVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSK 393
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKEERRARLQAQFSQMRPV M P V PRMPMYPPG G+GQQ YGQ PP
Sbjct: 394 PLYVALAQRKEERRARLQAQFSQMRPVVMPPPVAPRMPMYPPGVPGMGQQMFYGQPPPPF 453
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPI 422
+ PQ GFG+QQ ++PGMRP APMPNF +P+V QGQQ QRP GRR GAG + QQP+P+
Sbjct: 454 VNPQPGFGFQQHMIPGMRPGVAPMPNFVMPMVQQGQQPQRPSGRRAGAGGM---QQPMPM 510
Query: 423 MPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 480
QM PRG YRY GR M D PF G G M+P P +MG + D Q +P
Sbjct: 511 GHQQMLPRGGRGGYRYASGRGMPDSPF-RGVGGMVPSPYEMGR-MTLNDNGAPQQVPSGT 568
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L++ALAN+ PEQQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALK+
Sbjct: 569 LASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKS 628
Query: 541 KVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
KVAEAM+VLRS AQQQ + PADQLA+LSL++ V+
Sbjct: 629 KVAEAMDVLRS-AQQQTSAPADQLAALSLSDGFVA 662
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 160/286 (55%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD S+ L D FS G+++S ++ D + S G+ +V F + A A++
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEM 102
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + + R+ + K+ N+F+KNLD+S ++ L F +GTI S
Sbjct: 103 LNFTPVNGKPIRIMY----SNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILS 158
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V + G+SK +GFV +E + A A+ LNG +D++ YVG +K ERE
Sbjct: 159 CKVATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSP 218
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL +S ++ LKE+F +FG ITS V+R G S+ GFV
Sbjct: 219 ----------KFN--NVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFV 266
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F P++A+RA+ ++NGK + K LYV AQ+K ER +L+ +F +
Sbjct: 267 NFENPDDAARAVEDLNGKKLDDKELYVGRAQKKSEREMQLKEKFEK 312
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/572 (72%), Positives = 470/572 (82%), Gaps = 15/572 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL+VLNFTP+N IR+MYSHRDPS+RKSG GNIFIKNLDK+IDHKALHDTFS FGN
Sbjct: 79 AARALEVLNFTPVNGSPIRVMYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGN 138
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQF+++E+AQ AI+KLNGML+NDKQV+VG FLRKQER+T
Sbjct: 139 ILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTAT 198
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KT+FNNVFVKNL E+T +EDL K FGE+GTITS VVMRDGDGKS+CFGFVNFENADDAA
Sbjct: 199 DKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAA 258
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KA EALNGKKFDD+EW+VGKAQKK ERE ELK +FEQ+MKE DKFQG NLYIKNL DSI
Sbjct: 259 KAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSI 318
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEK+KELFS FGTITSCKVMRDP+GIS+GSGFVAFSTPEEASRAL EMNGKM+ SKPLY
Sbjct: 319 GDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLY 378
Query: 307 VAVAQRKEERRARLQ----AQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
VA+AQRKE+RRARL Q + + P +P+ L ++ +A
Sbjct: 379 VALAQRKEDRRARLSFLKCDQLQWHLQLVVCQCTPLLVPV-------LDNKYSMDKAHLL 431
Query: 363 IIPPQA-GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
P+ GFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR G R AG QQ+QQP+
Sbjct: 432 SCHPRLPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQR-PGGRRAGTGQQSQQPVQ 490
Query: 422 IMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL 481
+M QM PRG YRYP GR + D P AG ML VP DMG G+P RDA++ QP+PI AL
Sbjct: 491 LMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMG-GMPMRDAALSQPIPIGAL 549
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
+TALANA+P+QQRT+LGE+LYPLVEQLE +AAAKVTGMLLEMDQTEVLHLLESPEALK+K
Sbjct: 550 ATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSK 609
Query: 542 VAEAMEVLRSVAQQQANNPADQLASLSLNENL 573
V EAMEVLR+V QQQA ADQLASLSLN+NL
Sbjct: 610 VNEAMEVLRTV-QQQATGTADQLASLSLNDNL 640
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L+ + TD L +F + G + S V RD +S +G+VN+ N DAA+A+E
Sbjct: 26 SLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEV 85
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + V + + +V K N++IKNL +ID + L
Sbjct: 86 LNFTPVNGSPIRVMYSHRDP----------------SVRKSGAGNIFIKNLDKAIDHKAL 129
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV DPSG SKG GFV F + E A +A+ ++NG ++ K +YV
Sbjct: 130 HDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFL 189
Query: 312 RKEER 316
RK+ER
Sbjct: 190 RKQER 194
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L ++ D +L +LF++ G + S +V RD S S G G+V +S P++A+R
Sbjct: 22 FVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAAR 81
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N + P+ V + R R
Sbjct: 82 ALEVLNFTPVNGSPIRVMYSHRDPSVR 108
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/564 (70%), Positives = 456/564 (80%), Gaps = 28/564 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA+ LN+ PL K IR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFS FGN
Sbjct: 90 AARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGN 149
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTA 209
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVVM+DGDGKSK FGFVNFENADDAA
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAA 269
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ +KE DKFQ NLY+KNL SI
Sbjct: 270 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 329
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKE+FS FGT+TSCKVMRDP+G SKGSGFVAFSTPEEA+ A+++++GKMI SKPLY
Sbjct: 330 SDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLY 389
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RR AQFSQ+RPVAM PSV PRMP+YPPG G+GQQ YGQ PP +IPP
Sbjct: 390 VAIAQRKEDRR----AQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQGPPTMIPP 445
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFGYQQQLVPGMRP G P PNFF+P+V Q QQ G R G +Q QQ P+M Q
Sbjct: 446 QPGFGYQQQLVPGMRPGGGPGPNFFMPMVQQQQQRPG--GGRRPGGIQHPQQQNPMMQQQ 503
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG +RYP GR G +P P DMG + P+PI AL++ LA
Sbjct: 504 MHPRGRMFRYPQGR---------GGSGEVP-PYDMGNNM---------PLPIGALASHLA 544
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NASPEQQRT+LGESLYPLVEQLE ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 545 NASPEQQRTMLGESLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 604
Query: 547 EVLRSVAQQQANNPADQLASLSLN 570
+VLRSVA A A+QLASL+L+
Sbjct: 605 DVLRSVA---AGGAAEQLASLNLS 625
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 159/289 (55%), Gaps = 17/289 (5%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNA 97
GT ++++ +LD ++ L D FS G ++S ++ D + +S G+G+V F N + A A
Sbjct: 34 GTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 93
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I +LN + + K + V + R+ ++ N+F+KNLDES + L F +G
Sbjct: 94 IQELNYIPLYGKPIRVMY----SHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGN 149
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V D G+SK +GFV + N + A KA+E LNG +D++ YVG ++ ER+
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD--- 206
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
T +K + N+Y+KNL +S D+ LK F E+G ITS VM+D G SKG
Sbjct: 207 ---------STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGF 257
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV F ++A+RA+ +NG K YV AQ+K ER L+ ++ Q
Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPE 286
T F +LY+ +L ++ D +L + FS+ G + S +V RD + S G G+V F+ P+
Sbjct: 29 TAAGFGTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQ 88
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+A+RA+ E+N + KP+ V + R R
Sbjct: 89 DAARAIQELNYIPLYGKPIRVMYSHRDPSVR 119
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/482 (80%), Positives = 428/482 (88%), Gaps = 3/482 (0%)
Query: 94 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
AQ AIDKLNGML+NDKQV+VGHFLRKQERE+ TKF NV+VKNL ESTTD+ LKK+FG
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
E+G ITSAVVMRD DGKSKCFGF+NFE A+DAAKAVE+LNGKKFDD+EWYVGKAQKKSER
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
EQELK +FEQ KE VDK+QGLNLY+KNL D+IDDEKLKELFSEFGTITSCKVMRDPSGI
Sbjct: 121 EQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGI 180
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 333
S+GSGFVAFST EEASRAL+EMNGKMIVSKPLYVA+AQRKEERRA+L+AQFSQ+RPVAM
Sbjct: 181 SRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQLRPVAMP 240
Query: 334 PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP 393
PS+ PRMP+YPPG G+GQQ YGQ PPA+IPPQAGFGYQQQLVPGMRP GAPMPNFF+P
Sbjct: 241 PSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPNFFMP 300
Query: 394 VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS 453
+V QGQQGQRPGGRRGAGPVQQTQQP+P+M QM PRG YRYP GRN + P G
Sbjct: 301 LVQQGQQGQRPGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGRNGPEGPMPGVPGG 360
Query: 454 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 513
ML VP DMG +P RD+++GQPMPI+ L++ALANA PEQQRT+LGESLYPLV+QLE + A
Sbjct: 361 MLSVPYDMGGMLP-RDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEHA 419
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENL 573
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR+V QQ NPADQLASLSLN+NL
Sbjct: 420 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV--QQTTNPADQLASLSLNDNL 477
Query: 574 VS 575
VS
Sbjct: 478 VS 479
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 134/235 (57%), Gaps = 20/235 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHDTF 61
A A+D LN +N+K + + + R R+S TG N+++KNL +S L F
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQE-RESTTGMTKFQNVYVKNLSESTTDDGLKKVF 59
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
FGNI S + D G+SK FGF+ FE E A A++ LNG +DK+ +VG +K E
Sbjct: 60 GEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSE 119
Query: 122 RETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
RE +K+KF N++VKNLD++ DE LK++F E+GTITS VMRD
Sbjct: 120 REQ-ELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPS 178
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
G S+ GFV F +++A++A+ +NGK + YV AQ+K ER +L+ QF Q
Sbjct: 179 GISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQ 233
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/578 (64%), Positives = 450/578 (77%), Gaps = 28/578 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A+ LN++ LN K IRI YS RD S R+SG GN+F+KNLDKS+D+K LH+TFS G
Sbjct: 95 AEKAMQKLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGT 154
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D GQS+G+GFVQF+ ++SA+NAI+KLNG ++NDKQ+FVG FLRK+ERE+ A
Sbjct: 155 IVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAA 214
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KF NV+VKNL E TTD++LK FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAA
Sbjct: 215 DKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAA 274
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ + +KF GLNLY+KNL D++
Sbjct: 275 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTV 334
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS EASR L EMNGKM+ KPLY
Sbjct: 335 TDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLY 394
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRA+LQAQFSQMRP A P V PRMP++P G GLGQQ YGQ P IIP
Sbjct: 395 VALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFPGGAPGLGQQIFYGQGSPPIIPH 453
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPV-QQTQQPLPIMP 424
Q GFGYQ QLVPG+RP+ F P++ GQQG RPGGRR G GP+ Q QQP+P M
Sbjct: 454 QPGFGYQPQLVPGLRPS-------FFPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQ 506
Query: 425 HQMPPRGHAYRYPL-GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
QM PRG YRYP GRNM D P G M+PV DM G+P + QPM L+T
Sbjct: 507 PQMMPRGRGYRYPPGGRNMPDGPM---LGGMVPVAYDMN-GMP-----IAQPMSAGQLAT 557
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGMLLEMDQTEVLHLLESPEAL AKV+
Sbjct: 558 SLANATPAQQRTLLGESLYPLVDQIEHENAAKVTGMLLEMDQTEVLHLLESPEALNAKVS 617
Query: 544 EAMEVLRSVAQ--------QQANNPADQLASLSLNENL 573
EA++VLR+V Q ++ +P+D +ASLS+N++
Sbjct: 618 EALDVLRNVNQPSTQVSEGNKSGSPSDLMASLSINDHF 655
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 157/286 (54%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ ++S ++ D + S G+G+V + N E A+ A+ K
Sbjct: 42 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQK 101
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + + R + N+FVKNLD+S ++ L + F GTI S
Sbjct: 102 LNYSTLNGKMIRITYSSRDSSARRSGV----GNLFVKNLDKSVDNKTLHETFSGCGTIVS 157
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+S+ +GFV F+ D A A+E LNGK +D++ +VG +K ERE
Sbjct: 158 CKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERE------ 211
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
DK + N+Y+KNL + D++LK F ++G+I+S VMRD G S+ GFV
Sbjct: 212 ------SAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFV 265
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F PE+A+RA+ +NGK K YV AQ+K ER L ++ Q
Sbjct: 266 NFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 311
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/579 (65%), Positives = 451/579 (77%), Gaps = 28/579 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A+ LN++ LN K IRI YS RD S R+SG GN+F+KNLDKS+D+K LH+ FS G
Sbjct: 100 AEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT 159
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+ATD GQS+G+GFVQF+ ++SA+NAI+KLNG ++NDKQ+FVG FLRK+ERE+ A
Sbjct: 160 IVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAA 219
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KF NV+VKNL E+TTD++LK FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAA
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAA 279
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ + +KF GLNLY+KNL D++
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTV 339
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS EASR L EMNGKM+ KPLY
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLY 399
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRA+LQAQFSQMRP A P V PRMP++ G GLGQQ YGQ PP IIP
Sbjct: 400 VALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPH 458
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFF-VPVVSQGQQGQRPGGRR-GAGPV-QQTQQPLPIM 423
Q GFGYQ QLVPGMRPA FF P++ GQQG RPGGRR G GP+ Q QQP+P M
Sbjct: 459 QPGFGYQPQLVPGMRPA------FFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYM 512
Query: 424 PHQMPPRGHAYRYPL-GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
QM PRG YRYP GRNM D P G M+PV DM +P QPM L+
Sbjct: 513 QPQMMPRGRGYRYPSGGRNMPDGPM---PGGMVPVAYDMNV-MP-----YSQPMSAGQLA 563
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
T+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGMLLEMDQTEVLHLLESPEAL AKV
Sbjct: 564 TSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKV 623
Query: 543 AEAMEVLRSVAQ--------QQANNPADQLASLSLNENL 573
+EA++VLR+V Q ++ +P+D LASLS+N++L
Sbjct: 624 SEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSINDHL 662
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 158/286 (55%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ ++S ++ D + S G+G+V + N + A+ A+ K
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + + R + N+FVKNLD+S ++ L + F GTI S
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGV----GNLFVKNLDKSVDNKTLHEAFSGCGTIVS 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+S+ +GFV F+ D A A+E LNGK +D++ +VG +K ERE
Sbjct: 163 CKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERE------ 216
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
DK + N+Y+KNL ++ D++LK F ++G+I+S VMRD G S+ GFV
Sbjct: 217 ------SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFV 270
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F PE+A+RA+ +NGK K YV AQ+K ER L ++ Q
Sbjct: 271 NFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 316
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/579 (65%), Positives = 451/579 (77%), Gaps = 28/579 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A+ LN++ LN K IRI YS RD S R+SG GN+F+KNLDKS+D+K LH+ FS G
Sbjct: 100 AEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT 159
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+ATD GQS+G+GFVQF+ ++SA+NAI+KLNG ++NDKQ+FVG FLRK+ERE+ A
Sbjct: 160 IVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAA 219
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KF NV+VKNL E+TTD++LK FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAA
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAA 279
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ + +KF GLNLY+KNL D++
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTV 339
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS EASR L EMNGKM+ KPLY
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLY 399
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRA+LQAQFSQMRP A P V PRMP++ G GLGQQ YGQ PP IIP
Sbjct: 400 VALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPH 458
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFF-VPVVSQGQQGQRPGGRR-GAGPV-QQTQQPLPIM 423
Q GFGYQ QLVPGMRPA FF P++ GQQG RPGGRR G GP+ Q QQP+P M
Sbjct: 459 QPGFGYQPQLVPGMRPA------FFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYM 512
Query: 424 PHQMPPRGHAYRYPL-GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
QM PRG YRYP GRNM D P G M+PV DM +P QPM L+
Sbjct: 513 QPQMMPRGRGYRYPSGGRNMPDGPM---PGGMVPVAYDMNV-MP-----YSQPMSAGQLA 563
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
T+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGMLLEMDQTEVLHLLESPEAL AKV
Sbjct: 564 TSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKV 623
Query: 543 AEAMEVLRSVAQ--------QQANNPADQLASLSLNENL 573
+EA++VLR+V Q ++ +P+D LASLS+N++L
Sbjct: 624 SEALDVLRNVNQPSSQGSDGNKSGSPSDLLASLSINDHL 662
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 158/286 (55%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ ++S ++ D + S G+G+V + N + A+ A+ K
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + + R + N+FVKNLD+S ++ L + F GTI S
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGV----GNLFVKNLDKSVDNKTLHEAFSGCGTIVS 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+S+ +GFV F+ D A A+E LNGK +D++ +VG +K ERE
Sbjct: 163 CKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERE------ 216
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
DK + N+Y+KNL ++ D++LK F ++G+I+S VMRD G S+ GFV
Sbjct: 217 ------SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFV 270
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F PE+A+RA+ +NGK K YV AQ+K ER L ++ Q
Sbjct: 271 NFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 316
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/570 (64%), Positives = 422/570 (74%), Gaps = 49/570 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNF PLN K IR+MYS+RDPS R+SG+ NIFIKNLDK+IDHK LHDTFS+FGN
Sbjct: 92 AARALELLNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGN 151
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD GQSKGFGFVQ++ E+AQ+AI LNGMLINDK V+VG FLRKQERE
Sbjct: 152 ILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSV 211
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL ESTT EDL KIFG YG ITSAV+M DGKS+CFGF+NF++ DDAA
Sbjct: 212 DKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAA 271
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE LNGKK +D+EWYVG+AQKKSERE ELK +FEQ+MK+ DK+QGLNLY+KNL DSI
Sbjct: 272 RAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSI 331
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L ELFS +G ITSCK+MRD +G+SKGSGFVAFST EEAS+AL EMNGKMI KPLY
Sbjct: 332 GDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 391
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQRKE+R+A L
Sbjct: 392 VAFAQRKEDRKAML---------------------------------------------- 405
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GFG+QQQLVPGMRP GA MPN+FVPVV QGQQG RPG RR Q QQ Q
Sbjct: 406 QPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQ 465
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG YRYP NM D P G + DMG G P RDA + P PI L++ALA
Sbjct: 466 MLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG-GFPVRDAGL-SPAPIGTLTSALA 523
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGESLYPLVE LE++ AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM
Sbjct: 524 NANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAM 583
Query: 547 EVLRSVAQQQ-ANNPADQLASLSLNENLVS 575
+VLR+VAQQ AN P QLA+LSL + ++S
Sbjct: 584 DVLRNVAQQHNANTPTSQLAALSLGDAIIS 613
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 156/286 (54%), Gaps = 18/286 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDK 100
++++ +L+ S+ L++ F G ++S ++ D G+S G +V F N A A++
Sbjct: 40 SLYVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALEL 98
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + V + R+ + ++ N+F+KNLD++ + L F +G I S
Sbjct: 99 LNFAPLNGKPIRVMY----SNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILS 154
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK FGFV ++ + A A+++LNG +D+ YVG +K ERE
Sbjct: 155 CKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQEREN----- 209
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+VDK + N+++KNL +S E L ++F +G ITS +M G S+ GF+
Sbjct: 210 -------SVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFI 262
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F +P++A+RA+ E+NGK I K YV AQ+K ER L+ +F Q
Sbjct: 263 NFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQ 308
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/580 (65%), Positives = 457/580 (78%), Gaps = 27/580 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL++LNF +N K IRIM+SHRDPSIRKSGT NIFIKNLDKSID+KALHDTF++FG
Sbjct: 78 ATRALELLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGT 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQFE +ESAQ AI+K+NGML+NDKQVFVG F+R+QER+
Sbjct: 138 ILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSG 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ +KFNNV+VKNL +STTD++LKK+F YG I+SAVVMRD +GKSKCFGFVNFE+ADDAA
Sbjct: 198 VVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAA 257
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALNGKKFD++EWYVG+AQKKSERE EL+ +FEQ KE ++K+QG+NLY+KNL D+I
Sbjct: 258 KAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTI 317
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E+FSE+GTI SCKVMRDP G S+GSGFVAFS+P+EA+RA+ EMNGKM+ SKPLY
Sbjct: 318 DDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLY 377
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF-LYGQAPPAIIP 365
VA+AQRKEERR RLQA F+Q PV GP+VP +PMY P G+G YGQ PP IP
Sbjct: 378 VALAQRKEERRNRLQAAFAQRTPV--GPAVPTSLPMYHPAGPGMGPGMSYYGQHPPGPIP 435
Query: 366 PQ-AGFGYQQQLVPGMRPAGAPMPNFF----VPVVSQGQQGQRPGGRRGAGPVQQTQQPL 420
Q A FGYQ QL+ RP GA PN+ VP + QGQQGQR GGRRG P QQ Q
Sbjct: 436 LQPAAFGYQPQLI---RPGGAQFPNYMGFPNVPPLRQGQQGQRAGGRRGGAPQQQQPQ-- 490
Query: 421 PIMPHQMPPRG--HAYRYPL-GRNMQD--FPFDMGAGSMLPVPVDMGAGIPRRDASVG-- 473
QM RG +RY RN D P G+MLPVP+++G G+P +A G
Sbjct: 491 ----QQMIQRGGNRNFRYTTNARNTPDVAVPPQGIMGAMLPVPIEIG-GVPVANADAGVP 545
Query: 474 -QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
QP+PI+AL++ALA+A PEQQR +LGE LYPLV+QLE D A KVTGMLLEMDQTEVLHL+
Sbjct: 546 QQPLPISALASALASAPPEQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVLHLI 605
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNEN 572
ESPEALKAKVAEAM+VLR +AQ + P DQL +L++ ++
Sbjct: 606 ESPEALKAKVAEAMDVLR-MAQAVPSPPTDQLGNLAIGDS 644
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L ++ + +L E+FS+ G + S +V RD + S G +V ++ ++A+R
Sbjct: 21 FVSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATR 80
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL +N + KP+ + + R
Sbjct: 81 ALELLNFNAVNGKPIRIMFSHR 102
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/580 (63%), Positives = 448/580 (77%), Gaps = 31/580 (5%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A RAL++LNFTP+N K++RIM+SHRDPSIRKSGT NIFIKNLD++ID+KALHDTF S
Sbjct: 55 VQDATRALELLNFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVS 114
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD +GQSKG+GFVQFE +ESAQ AIDK+NGML+ +KQVFVG F+R+QERE
Sbjct: 115 FGNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQERE 174
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
KFNNVFVKNL ESTTD++LK++FG +G ITSAVVMRD DGKSKCFGFVNFEN D
Sbjct: 175 Q---NGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPD 231
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
+AAKAV LNGKK +D+EWYVG+AQKKSERE EL+ ++EQ KE +D++QG NLY+KNL
Sbjct: 232 EAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANLYLKNLD 291
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D +DDE+L+E+F++FG+ITSCKVMRD G SKGSGFVA+S PEEA+RA EMNGKMI SK
Sbjct: 292 DDVDDERLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSK 351
Query: 304 PLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
P+YVA+AQRKEERRA+LQAQF+QMR PV + + MPMY PG GLGQQ YGQ PPA
Sbjct: 352 PIYVAMAQRKEERRAKLQAQFAQMRSPVGVATT----MPMYHPGAPGLGQQLFYGQ-PPA 406
Query: 363 IIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG---------GRRGAGP 412
++PPQ AGF YQQQ++ GMRP G +P++FVPVV QR G RRGA
Sbjct: 407 LMPPQPAGFAYQQQML-GMRPGGGQLPSYFVPVV------QRQGPQGGQRAAGARRGAAG 459
Query: 413 VQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS 471
QQ LP QM +RY P RN + P ++LPVP+++ + +
Sbjct: 460 TPVPQQQLPPPQQQMIRGNRNFRYTPSARNTPEVPVPPQLVNVLPVPLEIPSVPLTPVSP 519
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 531
+ +PI AL++ALA+ASPE QR +LGE LYPLV+QLE D A KVTGMLLEMDQTE+LHL
Sbjct: 520 LPPSLPIGALASALASASPEHQRVMLGEQLYPLVDQLEHDHAGKVTGMLLEMDQTEILHL 579
Query: 532 LESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
LE+P+ALKAKVAEAMEVLR Q +P+ +LASLSLNE
Sbjct: 580 LEAPDALKAKVAEAMEVLR----QAQRSPSTELASLSLNE 615
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 164/290 (56%), Gaps = 20/290 (6%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
+ ++++ +LD ++ L+D F+ G +LS ++ D + +S G+ +V + N + A A+
Sbjct: 3 STSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRAL 62
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN +N K V + R+ K+ N+F+KNLD + ++ L F +G I
Sbjct: 63 ELLNFTPVNGKAVRIMF----SHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNI 118
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D +G+SK +GFV FE + A A++ +NG +++ +VG ++ EREQ
Sbjct: 119 LSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQEREQ--N 176
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
G+F N+++KNLG+S D++LKE+F FG ITS VMRD G SK G
Sbjct: 177 GKFN-------------NVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFG 223
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F P+EA++A+ +NGK I K YV AQ+K ER A L+A++ Q R
Sbjct: 224 FVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQER 273
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L ++ + +L +LF++ G + S +V RD + S G +V ++ ++A+R
Sbjct: 1 FVSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATR 60
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL +N + K + + + R
Sbjct: 61 ALELLNFTPVNGKAVRIMFSHR 82
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/574 (64%), Positives = 448/574 (78%), Gaps = 18/574 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL++LNF+ LN IRIM+SHRDPSIRKSGT NIFIKNLDK+ID+KALHDTFS+FG
Sbjct: 82 ATRALELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGG 141
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A DGSGQSKG+GFVQFE +ESA AI+K+NGML+NDKQVFVG F+R+QER+
Sbjct: 142 ILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSG 201
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+KFNNV+VKNL E+TT++DLK +FG YGTI+SAVVMRD DGKSKCFGFVNFE+ D+AA
Sbjct: 202 GVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAA 261
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALNGKK D++EWYVG+AQKKSERE EL+ +FEQ KE ++K+QG+NLY+KNL D++
Sbjct: 262 KAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTV 321
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ELF+++GTITSCKVMRDP G S+GSGFVAFS+PEEA+RA+ EMNGKM+ SKPLY
Sbjct: 322 DDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLY 381
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEERRARLQA F+QMR ++ P+VP +PMY PGP Q YGQ P IP
Sbjct: 382 VALAQRKEERRARLQAAFAQMR-TSVSPAVPTSLPMYHPGPGMSPQMPYYGQHPSGPIPL 440
Query: 367 Q-AGFGYQQQLVPGMRPAGAPMPNFF----VPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
Q A FGYQ Q++ RP GA PN+ VP+ Q + GGRRG P QQ QQ
Sbjct: 441 QPAAFGYQPQII---RPGGAQFPNYIGYANVPLRQGQQGQRA-GGRRGGAPQQQQQQLQQ 496
Query: 422 IMPHQMPPRGHAYRYPLGRNMQD--FPFDMGAGSMLPVPVDMGAGIPRRDASVG---QPM 476
M + R Y P RNM D P G+M+PVP+++G G+P + G QP+
Sbjct: 497 QMIQRGGNRNLRYT-PNARNMPDTAVPPQGIMGAMVPVPLEIG-GLPVANVDSGVPQQPL 554
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PI+AL++ALA+A PEQQR +LGE LYPLV+QLE D A KVTGMLLEMDQTEVLHL+ESPE
Sbjct: 555 PISALASALASAPPEQQRAMLGEQLYPLVDQLEHDYAGKVTGMLLEMDQTEVLHLIESPE 614
Query: 537 ALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 570
AL+AKVAEAM+VLR +AQ P D+L +LS++
Sbjct: 615 ALRAKVAEAMDVLR-MAQAAPVAPTDELGNLSIS 647
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L ++ + +L ELF++ G + S +V RD + S G +V +++ ++A+R
Sbjct: 25 FVSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATR 84
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL +N ++ P+ + + R
Sbjct: 85 ALELLNFSVLNGNPIRIMFSHR 106
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/575 (65%), Positives = 454/575 (78%), Gaps = 19/575 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL++LNFTP+N K IRIM+SHRDPS+RKSG NIFIKNLDK+ID+KALHDTFS+FG
Sbjct: 78 ATRALELLNFTPVNGKPIRIMFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFSAFGG 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQFE +ESAQ+AI+K+NGML+NDKQVFVG F+R+QER+
Sbjct: 138 ILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQERDLSG 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+KFNNV+VKNL E+TTD++LKK+FG YG I+SAVVMRD +GKSKCFGFVNFE ADDAA
Sbjct: 198 GVSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAA 257
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALNGKK D++EWYVG+AQKKSERE EL+ +FEQ K ++K+QG+NLY+KNL D++
Sbjct: 258 KAVEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAV 317
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ELF+E+GTITSCKVM+DP G S+GSGFVAFSTPEEA+RA+ EMN KM+ SKPLY
Sbjct: 318 DDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLY 377
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF-LYGQAPPAIIP 365
VA+AQRKEERR RLQA F+QMR +GP+VP +PMY PGP GLG Q YGQ P IP
Sbjct: 378 VALAQRKEERRVRLQAAFAQMR-TPVGPTVPTSLPMYHPGP-GLGPQMPYYGQHPSGPIP 435
Query: 366 PQ-AGFGYQQQLVPGMRPAGAPMPNFF-VPVV--SQGQQGQRPGGRRGAGPVQQTQQPLP 421
Q A FGY Q+ MRP GA +PN+ P V SQGQQGQR GGRRG P QQ QQ
Sbjct: 436 LQPAAFGYPPQI---MRPGGAQIPNYIGYPNVSLSQGQQGQRAGGRRGGAPQQQQQQSQQ 492
Query: 422 IMPHQMPPRGHAYRYPLGRNMQDF---PFDMGAGSMLPVPVDMGAGIPRRDASVG---QP 475
M + R Y P RN D P G MLPVP+++G G+P + G QP
Sbjct: 493 QMIQRGGNRNFRYT-PNVRNASDGTAPPPQGMMGVMLPVPLEIG-GMPAANVDSGVPQQP 550
Query: 476 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 535
+PI+AL++ALA+A P+QQR +LGE LYPLV+QLE + A KVTGMLLEMDQTEVLHL+ESP
Sbjct: 551 LPISALASALASAPPDQQRAMLGEQLYPLVDQLEHEFAGKVTGMLLEMDQTEVLHLIESP 610
Query: 536 EALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 570
EALKAKV EAMEVLR +AQ + P ++L +LS++
Sbjct: 611 EALKAKVNEAMEVLR-MAQAVPSAPTEELGNLSIS 644
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 190
+V+V +L+ + ++ L +IF + G + S V RD +S + +VN+ +A DA +A+E
Sbjct: 24 TSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRALE 83
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN + + + S R+ L+ K N++IKNL +ID++
Sbjct: 84 LLNFTPVNGKPIRI----MFSHRDPSLR------------KSGAANIFIKNLDKAIDNKA 127
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV D SG SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 128 LHDTFSAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPF 187
Query: 311 QRKEER 316
R++ER
Sbjct: 188 VRRQER 193
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
++F ++Y+ +L ++ + +L E+FS+ G + S +V RD + S G +V + + ++A
Sbjct: 19 NQFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDA 78
Query: 289 SRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+RAL +N + KP+ + + R R
Sbjct: 79 TRALELLNFTPVNGKPIRIMFSHRDPSLR 107
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/577 (61%), Positives = 430/577 (74%), Gaps = 22/577 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL+ LNFTPLN K IRIM+SHRDPSIRKSG N+FIKNLD SID+KAL DTF++FG
Sbjct: 67 ATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGT 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCKIA D +GQSKG+GFVQFE +E+AQNAI +LNGMLINDKQV+VG F+R QER
Sbjct: 127 VLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGN 186
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+TTD+DLK IFG+YG+ITSAVVMRD G SKCFGFVNF+++D AA
Sbjct: 187 GSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAA 246
Query: 187 KAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE LNG F DD+ WYVGKAQ+KSERE EL+ +FEQ K +KF+G NLY+KNL DS
Sbjct: 247 AAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDS 306
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
++DEKLKELFSEFGTITSCKVM DP G+SKGSGFVAF TPEEA+RAL MNGKMI KPL
Sbjct: 307 VNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPL 366
Query: 306 YVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAI 363
YVAVAQRKEER+ARLQAQF+Q+R P AM P + +P + G L QQ +GQ P +
Sbjct: 367 YVAVAQRKEERKARLQAQFAQIRSPGAMTP-LQSGVPGFHSGAPRLAPQQLYFGQGTPGL 425
Query: 364 IPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQGQRPGGRRGAGPVQQTQQPL 420
IP Q AG+G+QQQL+PGMRP A PNF +P + QGQ GQR G RRG Q Q
Sbjct: 426 IPTQPAGYGFQQQLMPGMRPGVA--PNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQ 483
Query: 421 PIMPHQMPPRGHAYRYPL-GRNMQD---FPFDMGAGSMLPVPVDMGAGIPRR--DASVGQ 474
P++ +YRY GRN D P + G ++P+P D+ +G+P D
Sbjct: 484 PLLHRN---SNQSYRYMANGRNGVDPSMVPQGL-MGPVMPLPFDV-SGMPVSPMDIQRTG 538
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
P+P++ L++ALA+ +P+ QR +LGE L+PLVE++ER+ A KVTGMLLEMDQTEVLHL+ES
Sbjct: 539 PVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIES 598
Query: 535 PEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
P+ALK KVAEAM+VLR A N+ DQL SL LNE
Sbjct: 599 PDALKNKVAEAMDVLR--ASSSGNDVGDQLGSLMLNE 633
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 159/289 (55%), Gaps = 18/289 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +LD +I L+D F +LS ++ D + + S G+ +V F + + A NA++
Sbjct: 14 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 73
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + R+ K+ F NVF+KNLD S ++ L F +GT+ S
Sbjct: 74 LNFTPLNGKPIRIMF----SHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLS 129
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D +G+SK +GFV FE + A A++ LNG +D++ YVG + ER +
Sbjct: 130 CKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNR----- 184
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL ++ D+ LK +F ++G+ITS VMRD SG+SK GFV
Sbjct: 185 -----GNGSPKFT--NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFV 237
Query: 281 AFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRKEERRARLQAQFSQMR 328
F + + A+ A+ +NG K YV AQRK ER A L+A+F Q R
Sbjct: 238 NFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQER 286
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASR 290
F +LY+ +L +I + +L +LF + + S +V RD + S G +V F++P++A+
Sbjct: 10 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 69
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL +N + KP+ + + R
Sbjct: 70 ALEHLNFTPLNGKPIRIMFSHR 91
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/576 (61%), Positives = 428/576 (74%), Gaps = 20/576 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL+ LNFTPLN K IRIM+SHRDPSIRKSG N+FIKNLD SID+KAL DTF++FG
Sbjct: 527 ATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGT 586
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCKIA D +GQSKG+GFVQFE +E+AQNAI +LNGMLINDKQV+VG F+R QER
Sbjct: 587 VLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGN 646
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+TTD+DLK IFG+YG+ITSAVVMRD G SKCFGFVNF+++D AA
Sbjct: 647 GSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAA 706
Query: 187 KAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE LNG F DD+ WYVGKAQ+KSERE EL+ +FEQ K +KF+G NLY+KNL DS
Sbjct: 707 AAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDS 766
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
++DEKLKELFSEFGTITSCKVM DP G+SKGSGFVAF TPEEA+RAL MNGKMI KPL
Sbjct: 767 VNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPL 826
Query: 306 YVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAI 363
YVAVAQRKEER+ARLQAQF+Q+R P AM P + +P + G L QQ +GQ P +
Sbjct: 827 YVAVAQRKEERKARLQAQFAQIRSPGAMTP-LQSGVPGFHSGAPRLAPQQLYFGQGTPGL 885
Query: 364 IPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQGQRPGGRRGAGPVQQTQQPL 420
IP Q AG+G+QQQL+PGMRP A PNF +P + QGQ GQR G RRG Q Q
Sbjct: 886 IPTQPAGYGFQQQLMPGMRPGVA--PNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQ 943
Query: 421 PIMPHQMPPRGHAYRYPL-GRNMQD---FPFDMGAGSMLPVPVDM-GAGIPRRDASVGQP 475
P++ +YRY GRN D P + G ++P+P D+ G + D P
Sbjct: 944 PLLHRN---SNQSYRYMANGRNGVDPSMVPQGL-MGPVMPLPFDVSGMPVSPMDIQRTGP 999
Query: 476 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 535
+P++ L++ALA+ +P+ QR +LGE L+PLVE++ER+ A KVTGMLLEMDQTEVLHL+ESP
Sbjct: 1000 VPMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESP 1059
Query: 536 EALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
+ALK KVAEAM+VLR A N+ DQL SL LNE
Sbjct: 1060 DALKNKVAEAMDVLR--ASSSGNDVGDQLGSLMLNE 1093
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 159/290 (54%), Gaps = 18/290 (6%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 99
++++ +LD +I L+D F +LS ++ D + + S G+ +V F + + A NA++
Sbjct: 473 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 532
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +N K + + R+ K+ F NVF+KNLD S ++ L F +GT+
Sbjct: 533 HLNFTPLNGKPIRIMF----SHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVL 588
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S + D +G+SK +GFV FE + A A++ LNG +D++ YVG + ER +
Sbjct: 589 SCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNR---- 644
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
KF N+Y+KNL ++ D+ LK +F ++G+ITS VMRD SG+SK GF
Sbjct: 645 ------GNGSPKFT--NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGF 696
Query: 280 VAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRKEERRARLQAQFSQMR 328
V F + + A+ A+ +NG K YV AQRK ER A L+A+F Q R
Sbjct: 697 VNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQER 746
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEAS 289
+F +LY+ +L +I + +L +LF + + S +V RD + S G +V F++P++A+
Sbjct: 469 RFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDAT 528
Query: 290 RALAEMNGKMIVSKPLYVAVAQR 312
AL +N + KP+ + + R
Sbjct: 529 NALEHLNFTPLNGKPIRIMFSHR 551
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/556 (61%), Positives = 426/556 (76%), Gaps = 26/556 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RAL++LNF+ +N K IRIM+SHRDPSIRKSG NIFIKNLDKSID+KAL+DTF+ FGN
Sbjct: 91 ASRALEMLNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGN 150
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SGQS+G+GFVQFE +++AQ+AI ++NGML+ +KQVFVG F+R+QER+
Sbjct: 151 ILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTG 210
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KFNNV+VKNL ++TTD+DLK++FGE+G I+SAVVMRD +GKSKCFGFVNFENADDAA
Sbjct: 211 GIAKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAA 270
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE LNGKK DD+EWYVG+AQKKSERE EL+ +++Q KE DK+QG+NLY+KNL D+I
Sbjct: 271 LAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTI 330
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ELF FGTI SCKVMRDP G SKGSGFVAFST EEA+RA+ EMNG+M+ +KP+Y
Sbjct: 331 DDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIY 390
Query: 307 VAVAQRKEERRA--RLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
VA+AQ+++ERR QAQF+ R PV +GP+V +PM+ PG +G+GQ YGQ PPA
Sbjct: 391 VALAQKRDERRRFNAAQAQFAPFRVPVGLGPAVASSVPMFHPG-AGMGQPVFYGQHPPAF 449
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV-SQGQQGQRPGGRRGAG------PVQQT 416
P AGF YQQQ++ GMRP G +P + +P+V Q Q QRP RRG QQ
Sbjct: 450 PPQPAGFAYQQQMMSGMRPGGPQLPFYSLPIVQRQPQPQQRPNARRGGAPQQQQQQQQQQ 509
Query: 417 QQPLPIMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
QQP +M Q+ RG +RY P RN D AG MLPVP++ + G
Sbjct: 510 QQPPQLMSQQVCCRGRNFRYTPTSRNSSD------AGGMLPVPLEA--------SETGIL 555
Query: 476 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 535
PI L++ALA+ASP QR +LGE LYPLV+ LE + A KVTGMLLEMDQTEVLHL+ESP
Sbjct: 556 PPINVLASALASASPTDQRVMLGEQLYPLVDNLEHECAGKVTGMLLEMDQTEVLHLIESP 615
Query: 536 EALKAKVAEAMEVLRS 551
EALKAKVAEAM+VLR+
Sbjct: 616 EALKAKVAEAMDVLRN 631
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ +LS ++ D S +S G+ +V + + A A++
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN L+N K + + R+ K+ N+F+KNLD+S ++ L F ++G I S
Sbjct: 98 LNFSLVNGKPIRIMF----SHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILS 153
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+S+ +GFV FE D A A++ +NG +++ +VG ++ ER+
Sbjct: 154 CKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERD------ 207
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ + KF N+Y+KNLGD+ D+ LK +F EFG I+S VMRDP G SK GFV
Sbjct: 208 ----LTGGIAKFN--NVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFV 261
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F ++A+ A+ E+NGK + K YV AQ+K ER A L+A++ Q R
Sbjct: 262 NFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQER 309
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
++F +LY+ +L ++ + +L ++F++ + S +V RD S S G +V ++T ++A
Sbjct: 32 NQFFSTSLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDA 91
Query: 289 SRALAEMNGKMIVSKPLYVAVAQR 312
SRAL +N ++ KP+ + + R
Sbjct: 92 SRALEMLNFSLVNGKPIRIMFSHR 115
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/563 (61%), Positives = 427/563 (75%), Gaps = 33/563 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RAL++LNF+ +N K IRIM+SHRDPSIRKSG NIFIKNLDKSID+KAL+DTF+ FGN
Sbjct: 91 ASRALEMLNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGN 150
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SGQS+G+GFVQFE +++AQ+AI ++NGML+ +KQVFVG F+R+QER+
Sbjct: 151 ILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTG 210
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TKFNNV+VKNL ++TTD+DLK++FGE+G I+SAVVMRD +GKSKCFGFVNFENADDAA
Sbjct: 211 GVTKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAA 270
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE LNGKK DD+EWYVG+AQKKSERE EL+ +++Q KE DK+QG+NLY+KNL D+I
Sbjct: 271 LAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTI 330
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ELF FGTI SCKVMRDP G SKGSGFVAFST EEA+RA+ EMNG+M+ +KP+Y
Sbjct: 331 DDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIY 390
Query: 307 VAVAQRKEERRA--RLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
VA+AQ+++ERR QAQF+ R PV +GP+V +PM+ PG +G+GQ YGQ PPA
Sbjct: 391 VALAQKRDERRRFNAAQAQFAPFRVPVGLGPAVASSVPMFHPG-AGMGQPVFYGQHPPAF 449
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV-SQGQQGQRPGGRRGAG----------- 411
P AGF YQQQ++ GMRP G +P + +P+V Q Q QRP RRG
Sbjct: 450 PPQPAGFAYQQQMMSGMRPGGPQLPFYSLPIVQRQPQPQQRPNARRGGAPQQQQQQQQQQ 509
Query: 412 --PVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 468
QQ QQP +M Q+ RG +RY P RN D AG MLPVP++
Sbjct: 510 QQQQQQQQQPPQLMSQQVCCRGRNFRYTPTSRNSSD------AGGMLPVPLEA------- 556
Query: 469 DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 528
+ G PI L++ALA+ASP QR +LGE LYPLV+ LE + A KVTGMLLEMDQTEV
Sbjct: 557 -SETGILPPINVLASALASASPTDQRVMLGEQLYPLVDNLEHECAGKVTGMLLEMDQTEV 615
Query: 529 LHLLESPEALKAKVAEAMEVLRS 551
LHL+ESPEALKAKVAEAM+VLR+
Sbjct: 616 LHLIESPEALKAKVAEAMDVLRN 638
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD ++ L+D F+ +LS ++ D S +S G+ +V + + A A++
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN L+N K + + R+ K+ N+F+KNLD+S ++ L F ++G I S
Sbjct: 98 LNFSLVNGKPIRIMF----SHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILS 153
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+S+ +GFV FE D A A++ +NG +++ +VG ++ ER+
Sbjct: 154 CKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERD------ 207
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ V KF N+Y+KNLGD+ D+ LK +F EFG I+S VMRDP G SK GFV
Sbjct: 208 ----LTGGVTKFN--NVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFV 261
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F ++A+ A+ E+NGK + K YV AQ+K ER A L+A++ Q R
Sbjct: 262 NFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQER 309
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
++F +LY+ +L ++ + +L ++F++ + S +V RD S S G +V ++T ++A
Sbjct: 32 NQFFSTSLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDA 91
Query: 289 SRALAEMNGKMIVSKPLYVAVAQR 312
SRAL +N ++ KP+ + + R
Sbjct: 92 SRALEMLNFSLVNGKPIRIMFSHR 115
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/573 (60%), Positives = 417/573 (72%), Gaps = 41/573 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL+ LNFTPLN K IRIM+SHRDPSIRKSG N+FIKNLD SID+KAL DTF++FG
Sbjct: 93 ATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGT 152
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCKIA D +GQSKG+GFVQFE +E+AQNAI +LNGMLINDKQV+VG F+R QER
Sbjct: 153 VLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGN 212
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+TTD+DLK IFG+YG+ITSAVVMRD G SKCFGFVNF+++D AA
Sbjct: 213 GSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAA 272
Query: 187 KAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE LNG F DD+ WYVGKAQ+KSERE EL+ +FEQ K +KF+G NLY+KNL DS
Sbjct: 273 AAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDS 332
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
++DEKL ELFSEFGTITSCKVM DP G+SKGSGFVAF TPEEA+RAL MNGKMI KPL
Sbjct: 333 VNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPL 392
Query: 306 YVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAI 363
YVAVAQRKEER+ARLQAQF+Q+R P AM P + +P + G L QQ +GQ P +
Sbjct: 393 YVAVAQRKEERKARLQAQFAQIRSPGAMTP-LQSGVPGFHSGAPRLAPQQLYFGQGTPGL 451
Query: 364 IPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQGQRPGGRRGAGPVQQTQQPL 420
IP Q AG+G+QQQL+PGMRP A PNF +P + QGQ GQR G RRG Q Q
Sbjct: 452 IPTQPAGYGFQQQLMPGMRPGVA--PNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQ 509
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR--DASVGQPMPI 478
P G ++P+P D+ +G+P D P+P+
Sbjct: 510 P---------------------------ASWGPVMPLPFDV-SGMPVSPMDIQRTGPVPM 541
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
+ L++ALA+ +P+ QR +LGE L+PLVE++ER+ A KVTGMLLEMDQTEVLHL+ESP+AL
Sbjct: 542 STLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPDAL 601
Query: 539 KAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
K KVAEAM+VLR A N+ DQL SL LNE
Sbjct: 602 KNKVAEAMDVLR--ASSSGNDVGDQLGSLXLNE 632
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 158/289 (54%), Gaps = 18/289 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +LD +I L+D F +LS ++ D + + S G+ +V F + + A NA++
Sbjct: 40 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + R+ K+ F NVF+KNLD S ++ L F +GT+ S
Sbjct: 100 LNFTPLNGKPIRIMF----SHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLS 155
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D +G+SK +GFV FE + A A++ LNG +D++ YVG + ER
Sbjct: 156 CKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNX----- 210
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL ++ D+ LK +F ++G+ITS VMRD SG+SK GFV
Sbjct: 211 -----GNGSPKFT--NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFV 263
Query: 281 AFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRKEERRARLQAQFSQMR 328
F + + A+ A+ +NG K YV AQRK ER A L+A+F Q R
Sbjct: 264 NFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQER 312
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASR 290
F +LY+ +L +I + +L +LF + + S +V RD + S G +V F++P++A+
Sbjct: 36 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 95
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N + KP+ + + R R
Sbjct: 96 ALEHLNFTPLNGKPIRIMFSHRDPSIR 122
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/579 (60%), Positives = 427/579 (73%), Gaps = 29/579 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+ A+++LNFTPLN K IRIM+S RDPSIRKSG GN+FIKNLD SID+KALHDTF++FG
Sbjct: 89 ASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGT 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D SGQSKG+GFVQF+N+E+AQNAI +LNGMLINDKQV+VG F+R+QERE
Sbjct: 149 VLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTN 208
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+ TDEDLKK+FG YGTITSA VM+D +GKS+CFGFVNF+N D AA
Sbjct: 209 GSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAA 268
Query: 187 KAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE LNG +DR YVG+AQ+K+ERE ELK + EQ +K QG NLY+KNL DS
Sbjct: 269 AAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDS 328
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
DEKLK+LFSEFGTITSCKVM D +G SKGSGFV+FSTPEEAS+AL EMNGK+I KPL
Sbjct: 329 FSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPL 388
Query: 306 YVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAI 363
YVAVAQRKEER+A LQAQF+Q+R P M P +P +P+Y PG L QQ YGQ P
Sbjct: 389 YVAVAQRKEERKAHLQAQFAQIRAPGGMAP-LPAGIPLYHPGAPRLAPQQLYYGQGTPGF 447
Query: 364 IPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQGQRPGGRRGAGPVQQTQQPL 420
+PPQ AGF +QQQ++PGMRP A PNF +P + QGQ GQR G RR G QQ QQ
Sbjct: 448 MPPQPAGFSFQQQILPGMRPGVA--PNFIMPYHLQRQGQLGQRTGVRRN-GNFQQVQQ-- 502
Query: 421 PIMPHQMPPR--GHAYRY-PLGRNMQD---FPFDMGAGSMLPVPVDMGAGIPRRDASVGQ 474
+QM R +RY P GRN D P + G M+P+P D G+G+ +
Sbjct: 503 ----NQMLHRNSNQGFRYMPNGRNGMDPSLVPHGL-MGPMMPMPFD-GSGVTAAPNDNQR 556
Query: 475 PMPI-TALSTALANASPEQQRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLL 532
P + T L++ALA+A+PE QR +LGE LYPLVE+L AKVTGMLLEMDQ+EV++L+
Sbjct: 557 PGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNQYTAKVTGMLLEMDQSEVINLI 616
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
ESPE LK KV+EAM+VL VA + + DQL S+SLNE
Sbjct: 617 ESPEDLKTKVSEAMQVLHEVA---SGSEVDQLGSMSLNE 652
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 18/289 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDK 100
++++ +L+ +++ + L+D FS I S ++ D + +S G+ +V F N + A NA++
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + +R+ K+ NVF+KNLD S ++ L F +GT+ S
Sbjct: 96 LNFTPLNGKPIRIMF----SQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLS 151
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV F+N + A A++ LNG +D++ YVG ++ EREQ
Sbjct: 152 CKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQ----- 206
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL ++ DE LK+LF +GTITS VM+D +G S+ GFV
Sbjct: 207 -----TNGSPKFT--NVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFV 259
Query: 281 AFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
F P+ A+ A+ +NG I + + LYV AQRK ER A L+A+ Q R
Sbjct: 260 NFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQER 308
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 21/137 (15%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY-------SHRDPSIR------------KSGTGNIFIK 46
SAA A++ LN T +NN R++Y + R+ ++ K N+++K
Sbjct: 266 SAAAAVERLNGTTINND--RVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLK 323
Query: 47 NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 106
NLD S + L D FS FG I SCK+ D +G+SKG GFV F E A A++++NG LI
Sbjct: 324 NLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLI 383
Query: 107 NDKQVFVGHFLRKQERE 123
K ++V RK+ER+
Sbjct: 384 GRKPLYVAVAQRKEERK 400
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEASR 290
F +LY+ +L ++++E+L +LFS+ I S +V RD + S G +V F+ ++AS
Sbjct: 32 FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASN 91
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
A+ +N + KP+ + +QR
Sbjct: 92 AMELLNFTPLNGKPIRIMFSQR 113
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/576 (61%), Positives = 424/576 (73%), Gaps = 24/576 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A++AL++LNFT + K IRIMYSHRDPSIRKSG NIFIKNL+KSID+KALHDTFS+FG
Sbjct: 80 ASQALELLNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGT 139
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSC++ D +G SKG+GFVQFE +ESAQ AI+K+NGMLIND+QV V F+RKQER+ +
Sbjct: 140 ILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAPFIRKQERDMAS 199
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K FNNV+VKNL E+TTDEDL+K+F +G I+SAVVMRD DGKSKCFGFVNFEN DDAA
Sbjct: 200 SKN-FNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAA 258
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE LNGK +++EWYVG+AQKKSERE ELK +FEQ KE +KFQG+NLY+KN+ DSI
Sbjct: 259 NAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSI 318
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ELF+ FGT+TSCKVM+ P G S GSGFV FS PEEA +A+ +MNGKM+ SKPLY
Sbjct: 319 DDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLY 378
Query: 307 VAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
VA+AQRKEERRARLQAQF+QM+ V P P MY PGP G+G Q YGQ P ++
Sbjct: 379 VALAQRKEERRARLQAQFAQMQIVAPNAPPMAPNPPSMYHPGPQGMGHQMFYGQPAPGLL 438
Query: 365 PPQA-GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
P QA GFGYQQ +VP MRP A +PN+F+PV GQQ QRP RRG V Q
Sbjct: 439 PSQANGFGYQQPMVPTMRPTSAGVPNYFMPVQRPGQQIQRPVNRRGG--VGPLQPQHHQP 496
Query: 424 PHQMPPRG--HAYRYP-LGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 480
P Q PRG + RY R M D G G MGA +AS MP
Sbjct: 497 PPQQFPRGGNRSMRYSQFSRTMPDSTMQ-GFGM-------MGAA----NASNIGLMPAL- 543
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
++ALA+ASPE+QR +LGE LYPLV++LE D A KVTGMLLEMDQ EVLHL++ LKA
Sbjct: 544 -ASALASASPEEQRVMLGEQLYPLVDRLEHDHAGKVTGMLLEMDQPEVLHLIDLLRQLKA 602
Query: 541 KVAEAMEVLR-SVAQQQANNPADQLASLSLNENLVS 575
KVAEAM+VLR + +N+P DQLASLSL E+L S
Sbjct: 603 KVAEAMDVLRMAQGSISSNSPLDQLASLSLTESLTS 638
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +LD ++ +L ++F + G + S V RD KS + +VN+ DA++A+E
Sbjct: 27 SLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALEL 86
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + ++ K N++IKNL SID++ L
Sbjct: 87 LNFTLVKGKPIRIMYSHRDP----------------SIRKSGAANIFIKNLEKSIDNKAL 130
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FGTI SC+V+ D +G SKG GFV F E A A+ ++NG +I + + VA
Sbjct: 131 HDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAPFI 190
Query: 312 RKEER 316
RK+ER
Sbjct: 191 RKQER 195
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 343/501 (68%), Positives = 396/501 (79%), Gaps = 9/501 (1%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 90
RDPS R+SG+ NIFIKNLDK+ID+K LHDTFS+FG ILSCK+A D GQSKGFGFVQ+E
Sbjct: 1 RDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEK 60
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ESAQ+A+ LNGMLINDK V+VG FLRKQER+ K KFNNVFVKNL ESTT +DL K
Sbjct: 61 EESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVK 120
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+F YGTITSAVVM DGKS+CF FVNFE+ DDAA+AVE LNGKK +D+EWYVG+AQKK
Sbjct: 121 VFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKK 180
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
SERE +LK +FEQ+MK+ DK+QG NLY+KNL D I D++L+ELFS FG ITSCK+MRD
Sbjct: 181 SEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQ 240
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
+G+SKGSGFV+FST EEAS+AL EMNGKMI KPLYVA AQRKE+R+A LQAQFSQMRPV
Sbjct: 241 NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPV 300
Query: 331 AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRP-AGAPMPN 389
M PS+ PR+PMYPP P+ LGQQ YGQAPPA++PPQ G+G+QQQLVPGMRP GA MPN
Sbjct: 301 PMTPSMTPRLPMYPPMPT-LGQQLFYGQAPPAMMPPQPGYGFQQQLVPGMRPGGGAHMPN 359
Query: 390 FFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNM---QDF 445
+FVPVV GQQG RPG RR Q QQ QM PRG YRYP G R+M Q
Sbjct: 360 YFVPVVQPGQQGPRPGIRRNGPGSAQGQQTPQPFQQQMVPRGCVYRYPPGPRHMPEVQQM 419
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P +G G M+ P DMG+ P RDA V PI L++ALANA+PEQQRT+LGESLYPLV
Sbjct: 420 P-GVGVGGMVQ-PYDMGS-FPVRDAGVSPAPPIGTLTSALANATPEQQRTILGESLYPLV 476
Query: 506 EQLERDAAAKVTGMLLEMDQT 526
E+LE AAKVTGMLLEMDQT
Sbjct: 477 EKLEHQQAAKVTGMLLEMDQT 497
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 340/556 (61%), Positives = 412/556 (74%), Gaps = 19/556 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+ A+++LNFTPLN K IRIM+S RDPSIRKSG GN+FIKNLD SID+KALHDTF++FG
Sbjct: 89 ASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGT 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D SGQSKG+GFVQF+N+E+AQNAI +LNGMLINDKQV+VG F+R+QERE
Sbjct: 149 VLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTN 208
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+ TDEDLKK+FG YGTITSA VM+D +GKS+CFGFVNF+N D AA
Sbjct: 209 GSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAA 268
Query: 187 KAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE LNG +DR YVG+AQ+K+ERE ELK + EQ +K QG NLY+KNL DS
Sbjct: 269 AAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDS 328
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
DEKLK+LFSEFGTITSCKVM D +G SKGSGFV+FSTPEEAS+AL EMNGK+I KPL
Sbjct: 329 FSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPL 388
Query: 306 YVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAI 363
YVAVAQRKEER+A LQAQF+Q+R P M P +P +P+Y PG L QQ YGQ P
Sbjct: 389 YVAVAQRKEERKAHLQAQFAQIRAPGGMAP-LPAGIPLYHPGAPRLAPQQLYYGQGTPGF 447
Query: 364 IPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQGQRPGGRRGAGPVQQTQQPL 420
+PPQ AGF +QQQ++PGMRP A PNF +P + QGQ GQR G RR Q Q
Sbjct: 448 MPPQPAGFSFQQQILPGMRPGVA--PNFIMPYHLQRQGQLGQRTGVRRNGNFQQVQQN-- 503
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQD---FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
M H+ +G Y P GRN D P + G M+P+P D G+G+ +P
Sbjct: 504 QQMLHRNSNQGFRY-MPNGRNGMDPSLVPHGL-MGPMMPMPFD-GSGVTAAPNDNQRPGA 560
Query: 478 I-TALSTALANASPEQQRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLLESP 535
+ T L++ALA+A+PE QR +LGE LYPLVE+L AKVTGMLLEMDQ+EV++L+ESP
Sbjct: 561 LSTTLASALASATPENQRMMLGEHLYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIESP 620
Query: 536 EALKAKVAEAMEVLRS 551
E LK KV+EAM+VL+S
Sbjct: 621 EDLKTKVSEAMQVLQS 636
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 18/289 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDK 100
++++ +L+ +++ + L+D FS I S ++ D + +S G+ +V F N + A NA++
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + +R+ K+ NVF+KNLD S ++ L F +GT+ S
Sbjct: 96 LNFTPLNGKPIRIMF----SQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLS 151
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV F+N + A A++ LNG +D++ YVG ++ EREQ
Sbjct: 152 CKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQ----- 206
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL ++ DE LK+LF +GTITS VM+D +G S+ GFV
Sbjct: 207 -----TNGSPKFT--NVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFV 259
Query: 281 AFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
F P+ A+ A+ +NG I + + LYV AQRK ER A L+A+ Q R
Sbjct: 260 NFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQER 308
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 21/137 (15%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY-------SHRDPSIR------------KSGTGNIFIK 46
SAA A++ LN T +NN R++Y + R+ ++ K N+++K
Sbjct: 266 SAAAAVERLNGTTINND--RVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLK 323
Query: 47 NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 106
NLD S + L D FS FG I SCK+ D +G+SKG GFV F E A A++++NG LI
Sbjct: 324 NLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLI 383
Query: 107 NDKQVFVGHFLRKQERE 123
K ++V RK+ER+
Sbjct: 384 GRKPLYVAVAQRKEERK 400
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEASR 290
F +LY+ +L ++++E+L +LFS+ I S +V RD + S G +V F+ ++AS
Sbjct: 32 FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASN 91
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
A+ +N + KP+ + +QR
Sbjct: 92 AMELLNFTPLNGKPIRIMFSQR 113
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 336/570 (58%), Positives = 415/570 (72%), Gaps = 12/570 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+ A+++LNFTPLN K+IRIM SHRDPS+RKSG N+FIKNLD SID+KAL +TF+SFG+
Sbjct: 87 ASNAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGS 146
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D +GQSKG+GFVQFEN+E+AQ+AI++LNGMLINDK+VFVG F+R QER
Sbjct: 147 VLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEAT 206
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+T+DEDLKK F YG ITSA+VM+D GKSK FGFVNF++ D AA
Sbjct: 207 GSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAA 266
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE LNG F+D+ WYVG+AQ+K ERE ELK +FEQ +K + NLY+KNL D I
Sbjct: 267 AAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKI 326
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLKELFSEFG+ITSCKVM D G+SKGSGFVAFSTPEEASRAL MNGKMI KPLY
Sbjct: 327 DDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLY 386
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAIIP 365
VAVAQR+EER+ARLQA F+Q++ + P +P +P Y PG L QQ +GQ ++P
Sbjct: 387 VAVAQRREERKARLQAHFTQIQAPGLSP-MPSGLPGYHPGAPRLAPQQLFFGQGTAGMMP 445
Query: 366 PQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
PQ AG+G+QQQL+PGMR AG PNF +P Q Q Q G Q Q +
Sbjct: 446 PQPAGYGFQQQLLPGMR-AGVG-PNFVMPYQMQRQGQQGQRMGIRRGGNHQQIQQQQQLL 503
Query: 425 HQMPPRGHAYRYPLGRNMQDFPFDMG-AGSMLPVPVDMGAGIPR--RDASVGQPMPITAL 481
H+ +G Y + G G ++P P + +G+P DA P+PI+AL
Sbjct: 504 HRNTNQGLRYMGNARNGIDSSAAPQGFVGPVVPFPFE-ASGMPVTPSDAQRTAPVPISAL 562
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
+TALA+A+PE++ +LGE LYPLVE+LE D AKVTGMLLEMDQTEVLHL+ESP+ALK K
Sbjct: 563 TTALASATPEKRMVMLGEQLYPLVERLEPDQVAKVTGMLLEMDQTEVLHLIESPDALKKK 622
Query: 542 VAEAMEVLRSVAQQQANNPADQLASLSLNE 571
VAEAM+VL+ V A++ DQL SL+LNE
Sbjct: 623 VAEAMQVLQEVG---ASSVGDQLGSLALNE 649
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 164/290 (56%), Gaps = 21/290 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +L+ +++ L D FS ++S ++ D + + S G+ +V F N + A NA++
Sbjct: 34 SLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMEL 93
Query: 101 LNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
LN +N K ++ V H R+ K+ NVF+KNLD S ++ L++ F +G++
Sbjct: 94 LNFTPLNGKAIRIMVSH------RDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGSV 147
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D +G+SK +GFV FEN + A A+ LNG +D+E +VG+ + ER
Sbjct: 148 LSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER----- 202
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
E + N+Y+KNL ++ DE LK+ FS +G ITS VM+D SG SKG G
Sbjct: 203 -------IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFG 255
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F +P+ A+ A+ ++NG K YV AQRK ER A L+A+F Q R
Sbjct: 256 FVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQER 305
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEAS 289
+F +LY+ +L ++++ +L +LFS+ + S +V RD + S G +V FS P++AS
Sbjct: 29 QFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAS 88
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
A+ +N + K + + V+ R R
Sbjct: 89 NAMELLNFTPLNGKAIRIMVSHRDPSMR 116
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 323/417 (77%), Positives = 361/417 (86%), Gaps = 2/417 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA+A+DVLNFTPLNNK IRIMYSHRDPS+RKSG NIFIKNLD++IDHKAL+DTFS FGN
Sbjct: 78 AAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGN 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIA D SG SKG+GFVQFEN+ESAQ+AIDKLNGML+NDK V+VGHF RKQ+R+
Sbjct: 138 ILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNAL 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KFNNV+VKNL ES TD+DLK FGEYGTITSAVVMRD DGKSKCFGFVNFENAD AA
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAA 257
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALNGKKFDD+EWYVGKA KK ERE ELK + EQ+MKETVDKF G NLY+KNL DS+
Sbjct: 258 EAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSV 317
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKL ELFSEFGT+TSCK++RDP GIS+GSGFVAFSTPEEA+RALAEMNGKM+ KPLY
Sbjct: 318 TDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLY 377
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA AQ+KEER+ARL AQFSQ+RPV M P + PR+P YP G G+GQQ +YGQAPPA I
Sbjct: 378 VAPAQKKEERKARLPAQFSQVRPVTMAP-IAPRLPFYPAGVPGMGQQIMYGQAPPAFI-S 435
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
QAGFGY QQLVPGMRP GAPMPNFF+P+V QGQQGQRPGGRRGA P+QQ LP+M
Sbjct: 436 QAGFGYPQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRGASPMQQLPHSLPMM 492
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 153/288 (53%), Gaps = 17/288 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +LD + L+D F+ G ++S +I D S QS G+G+V F N A A+
Sbjct: 23 TTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAM 82
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N+K + + + R+ K+ N+F+KNLD + + L F +G I
Sbjct: 83 DVLNFTPLNNKPIRIMY----SHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNI 138
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D G SK +GFV FEN + A A++ LNG +D+ YVG Q+K +R+ L
Sbjct: 139 LSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALS 198
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
KF N+Y+KNL +S+ D+ LK F E+GTITS VMRD G SK G
Sbjct: 199 NA----------KFN--NVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFG 246
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F + A+ A+ +NGK K YV A +K ER L+ + Q
Sbjct: 247 FVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQ 294
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 337/568 (59%), Positives = 408/568 (71%), Gaps = 34/568 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA A+++LNFTPLN K+IRIM SHRDPS+RKSG N+FIKNLD SID+KAL +TF+SFG
Sbjct: 77 AANAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGP 136
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D +GQSKG+GFVQFEN+E+AQ+AI++LNGMLINDK+VFVG F+R QER
Sbjct: 137 VLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEAT 196
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+T+DEDLKK F YG+ITSA+VM+D GKSK FGFVNF++ D AA
Sbjct: 197 GSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAA 256
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE LNG F+D+ WYVG+AQ+K ERE ELK +FEQ +K + NLY+KNL D I
Sbjct: 257 AAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKI 316
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLKELFSEFG+ITSCKVM D G+SKGSGFVAFSTPEEASRAL MNGKMI KPLY
Sbjct: 317 DDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLY 376
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAIIP 365
VAVAQR+EER+ARLQA F+Q++ + P +P +P Y PG L QQ +GQ ++P
Sbjct: 377 VAVAQRREERKARLQAHFTQIQAPGLSP-MPSGLPGYHPGAPRLAPQQLFFGQGTAGMMP 435
Query: 366 PQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGG--RRGAGPVQQTQQPLPI 422
PQ AG+G+QQQL+PGMR AG PNF +P Q Q Q RRG
Sbjct: 436 PQPAGYGFQQQLLPGMR-AGVG-PNFVMPYQMQRQGQQGQRMGIRRGGN----------- 482
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
HQ + Y L Q FP + A M P DA P+PI+AL+
Sbjct: 483 --HQQIQQQQQVHYRLNV-FQRFP-PLTASGMPVTP---------SDAQRTAPVPISALT 529
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
TALA+A+PE++ +LGE LYPLVE+LE D AKVTGMLLEMDQTEVLHL+ESP+ALK KV
Sbjct: 530 TALASATPEKRMVMLGEQLYPLVERLEPDHVAKVTGMLLEMDQTEVLHLIESPDALKKKV 589
Query: 543 AEAMEVLRSVAQQQANNPADQLASLSLN 570
AEAM+VL+ V A++ DQL SL+LN
Sbjct: 590 AEAMQVLQEVG---ASSVGDQLGSLALN 614
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 164/290 (56%), Gaps = 21/290 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +L+ +++ L D FS ++S ++ D + + S G+ +V F N + A NA++
Sbjct: 24 SLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMEL 83
Query: 101 LNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
LN +N K ++ V H R+ K+ NVF+KNLD S ++ L++ F +G +
Sbjct: 84 LNFTPLNGKAIRIMVSH------RDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGPV 137
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D +G+SK +GFV FEN + A A+ LNG +D+E +VG+ + ER
Sbjct: 138 LSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER----- 192
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
E + N+Y+KNL ++ DE LK+ FS +G+ITS VM+D SG SKG G
Sbjct: 193 -------IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFG 245
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F +P+ A+ A+ ++NG K YV AQRK ER A L+A+F Q R
Sbjct: 246 FVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQER 295
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEAS 289
+F +LY+ +L ++++ +L +LFS+ + S +V RD + S G +V FS P++A+
Sbjct: 19 QFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAA 78
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
A+ +N + K + + V+ R R
Sbjct: 79 NAMELLNFTPLNGKAIRIMVSHRDPSMR 106
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 333/573 (58%), Positives = 417/573 (72%), Gaps = 22/573 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA A+ LNFTPLN K IRIM+SHRDPSIRKSG GN+FIKNLD ++D+K LH+TF++FG
Sbjct: 99 AANAMKALNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGT 158
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D +GQSKG+GFVQFEN+ESA+ AI L+GM +NDKQV+VG F+R+QER
Sbjct: 159 VLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTN 218
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+ T+EDL+K+FG YGTITSA+VM+D GKS+ FGFVNF++ D AA
Sbjct: 219 GSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAA 278
Query: 187 KAVEALNGKK-FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE LNG DD+ WYVG+AQ+KSERE ELK +FEQ ++ + NLY+KNL D+
Sbjct: 279 AAVEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDN 338
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
I+D KLKELFSEFG+ITSCKVM D G+SKGSGFVAFSTPEEASRAL EMNGKMI KPL
Sbjct: 339 INDVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPL 398
Query: 306 YVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAI 363
YVA+AQRKEER+ARLQA F+ +R P A+ P +P +P Y G L QQ +GQ P +
Sbjct: 399 YVAIAQRKEERKARLQAHFALVRAPGALAP-LPSGIPGYNAGAPRLAPQQLYFGQGTPGM 457
Query: 364 IPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQGQRPGGRRGAGPVQQTQQPL 420
+PPQ AG+G+QQQ++ MRPA PNF +P + QGQ GQR G RRG P Q QQ
Sbjct: 458 MPPQHAGYGFQQQILTSMRPAVG--PNFIIPYHLQRQGQPGQRMGMRRGGNPQQMQQQ-- 513
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMG-AGSMLPVPVDM-GAGIPRRDASVGQPMPI 478
+ H+ +G Y + G AG M+P+P ++ GA + V P+ I
Sbjct: 514 QQLLHRNNNQGLRYVGNARNSGNSSVVPQGLAGPMVPLPFEVSGASV-----DVQPPVTI 568
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
+ L++ALA+A+PE++ +LG+ LYPLVE+L+ D AKVTGMLLEMDQTEVLHL+ESP++L
Sbjct: 569 STLASALASATPEKRTEMLGDHLYPLVERLQPDHVAKVTGMLLEMDQTEVLHLIESPDSL 628
Query: 539 KAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
K KVAEAM+VLR + N DQL SL LNE
Sbjct: 629 KKKVAEAMQVLR----EATANVGDQLGSLVLNE 657
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 168/289 (58%), Gaps = 18/289 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDK 100
++++ +L+++++ + L+D FS ++S ++ D + +S G+G+V F N + A NA+
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKA 105
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + R+ K+ + NVF+KNLD + ++ L + F +GT+ S
Sbjct: 106 LNFTPLNGKPIRIMF----SHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLS 161
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D +G+SK +GFV FEN + A +A+ L+G +D++ YVG ++ ER +
Sbjct: 162 CKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTR----- 216
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL ++I +E L+++F +GTITS VM+D +G S+G GFV
Sbjct: 217 -----TNGSPKFT--NVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFV 269
Query: 281 AFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRKEERRARLQAQFSQMR 328
F P+ A+ A+ ++NG K YV AQRK ER A L+A+F Q R
Sbjct: 270 NFQDPDSAAAAVEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQER 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEAS 289
+F L+LY+ +L ++++E+L +LFS+ + S +V RD + S G G+V FS P++A+
Sbjct: 41 QFANLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAA 100
Query: 290 RALAEMNGKMIVSKPLYVAVAQR 312
A+ +N + KP+ + + R
Sbjct: 101 NAMKALNFTPLNGKPIRIMFSHR 123
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 323/575 (56%), Positives = 409/575 (71%), Gaps = 23/575 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA+A++VLNFTPLN K IRIM+SHRDP+ R+SG N+FIKNLD ID+KAL++TF+SFG
Sbjct: 87 AAKAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGP 146
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D +GQSKG+GF+QFEN+E AQ+AI++LNGML+ND++V+VG F+R+ ER
Sbjct: 147 VLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEAN 206
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL E+T+DEDLKKIF YG ITSA+VM+D +GKS+ FGFVNF++ D AA
Sbjct: 207 GSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAA 266
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE LNG F D+ WYVG+AQ+K ERE ELK +FEQ +K + NLY+KNLGD+I
Sbjct: 267 AAVEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTI 326
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+E+LKELFSEFG+ITSCKVM D G+SKGSGFVAFSTPEEASRAL+EMNGKMI KPLY
Sbjct: 327 DEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLY 386
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAIIP 365
VA+AQR+EER ARLQA FSQ++ + P++P +P Y PG L Q +GQ P ++P
Sbjct: 387 VAIAQRREERMARLQAHFSQIQAPGL-PTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMP 445
Query: 366 PQ-AGFGYQQQLVPGMRPAGAPMPNFFVPV------VSQGQQGQRPGGRRGAGPVQQTQQ 418
PQ AG+ +Q QL+PGMR A PNF +P + G RPGG Q
Sbjct: 446 PQPAGYSFQPQLLPGMRAAVG--PNFVMPYQLQRQGQQGQRMGMRPGG-------NHQQM 496
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG-AGSMLPVPVDM-GAGIPRRDASVGQPM 476
+ H+ +G Y + G G ++P+P + G I A P+
Sbjct: 497 QQQQLLHRNTNQGVRYVGNARNGIDSSVVPQGFVGPVMPLPFEASGMPITPSHAQPTTPV 556
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PI+ L+TALA+A+PE + +LGE LYPLVE LE D AKVTGMLLEMDQTEVLHL+ESP+
Sbjct: 557 PISTLTTALASATPENRMMMLGEQLYPLVECLEPDHVAKVTGMLLEMDQTEVLHLIESPD 616
Query: 537 ALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
ALK KVAEAM+VL+ A++ DQ SL+LNE
Sbjct: 617 ALKKKVAEAMQVLQEAG---ASSVGDQPGSLALNE 648
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEA 191
+++V +L+ + + L +F + + S V RD G S + +VNF N DAAKA+E
Sbjct: 34 SLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEV 93
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + + T + N++IKNL ID++ L
Sbjct: 94 LNFTPLNGKPIRIMFSHRDP----------------TTRRSGHANVFIKNLDTKIDNKAL 137
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E F+ FG + SCKV D +G SKG GF+ F E+A A+ +NG ++ + +YV
Sbjct: 138 YETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFV 197
Query: 312 RKEER 316
R+ ER
Sbjct: 198 RRLER 202
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEAS 289
+F +LY+ +L ++ + +L +LFS+ + S +V RD +G+ S G +V FS P++A+
Sbjct: 29 QFPNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAA 88
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
+A+ +N + KP+ + + R R
Sbjct: 89 KAMEVLNFTPLNGKPIRIMFSHRDPTTR 116
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 337/575 (58%), Positives = 419/575 (72%), Gaps = 21/575 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A++ LNFTP+N K IRIM S+RDPSIRKSG N+FIKNLD SID+KAL DTF++FG
Sbjct: 89 AVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D +GQSKG+GFVQFE++ESA+ +I+KLNGML+NDKQV+VGHF+R QER A
Sbjct: 149 VLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQER-IRA 207
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++F NV+VKNL E+TTD+DLK +F +GTITSA+VM D +GKSKCFGFVNF+N D AA
Sbjct: 208 NGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAA 267
Query: 187 KAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE L+G DD+ YVG+AQ+K+ERE ELK +FEQ K +K QG NLYIKNL D
Sbjct: 268 AAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDH 327
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDDEKLKELFSE+GTITSCKVM D G+SKGSGFVAFS+P+EA++AL EMNGKM KPL
Sbjct: 328 IDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPL 387
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAII 364
YVAVAQRKEER+ARLQAQF+Q+R S+P +P + PG + + QQ YGQ P +
Sbjct: 388 YVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVSPQQMYYGQGNPGLA 447
Query: 365 PPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPV--VSQGQQGQRPGGRRGAGPVQQTQQPLP 421
PPQ AG+G+Q QL+ GMRP PNF +P QGQ G R G RRG QQ LP
Sbjct: 448 PPQPAGYGFQPQLMSGMRPGMG--PNFLMPYQFQRQGQPGPRLGVRRGGNSQPLPQQQLP 505
Query: 422 IMPHQMPPRGHAYRY-PLGRNMQDFP-FDMGAGS-MLPVPVDMGAGI--PRRDASVGQPM 476
+ + G ++RY RN + P G S M+P+ D G+G+ P D + +
Sbjct: 506 LRGY-----GQSFRYMNNARNGLETPVLPQGLVSPMMPLAFD-GSGVSSPPNDIQRSRAV 559
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P + L++ALA+AS E QR +LGE LYPLVE+LE AAKVTGMLLEMDQ EVLHL+ESP+
Sbjct: 560 PTSTLASALASASLENQRVMLGEQLYPLVERLEPSHAAKVTGMLLEMDQPEVLHLIESPD 619
Query: 537 ALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
LK+KVAEAMEVLR + + +DQL +L+L +
Sbjct: 620 DLKSKVAEAMEVLRKASSEP--ELSDQLGALTLTK 652
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 124 TVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVN 178
TVA+ T ++++V +LD+S + L ++FG+ + S V RD + S + +VN
Sbjct: 23 TVAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVN 82
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
F + DA A+E LN + + + + + ++ K N++
Sbjct: 83 FSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDP----------------SIRKSGYANVF 126
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L++ F+ FGT+ SCKV D +G SKG GFV F + E A ++ ++NG
Sbjct: 127 IKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGM 186
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQM 327
++ K +YV R +ER +QF+ +
Sbjct: 187 LLNDKQVYVGHFIRHQERIRANGSQFTNV 215
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 336/575 (58%), Positives = 419/575 (72%), Gaps = 21/575 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A++ LNFTP+N K IRIM S+RDPSIRKSG N+FIKNLD SID+KAL DTF++FG
Sbjct: 89 AVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D +GQSKG+GFVQFE++ESA+ +I+KLNGML+NDKQV+VGHF+R QER A
Sbjct: 149 VLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQER-IRA 207
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++F NV+VKNL E+TTD+DLK +F +GTITSA+VM D +GKSKCFGFVNF+N D AA
Sbjct: 208 NGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAA 267
Query: 187 KAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE L+G DD+ YVG+AQ+K+ERE EL+ +FEQ K +K QG NLYIKNL D
Sbjct: 268 AAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDH 327
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDDEKLKELFSE+GTITSCKVM D G+SKGSGFVAFS+P+EA++AL EMNGKM KPL
Sbjct: 328 IDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPL 387
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG-QQFLYGQAPPAII 364
YVAVAQRKEER+ARLQAQF+Q+R S+P +P + PG + + QQ YGQ P +
Sbjct: 388 YVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVSPQQMYYGQGNPGLA 447
Query: 365 PPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPV--VSQGQQGQRPGGRRGAGPVQQTQQPLP 421
PPQ AG+G+Q QL+ GMRP PNF +P QGQ G R G RRG QQ LP
Sbjct: 448 PPQPAGYGFQPQLMSGMRPGMG--PNFLMPYQFQRQGQPGPRSGVRRGGNSQPLPQQQLP 505
Query: 422 IMPHQMPPRGHAYRY-PLGRNMQDFP-FDMGAGS-MLPVPVDMGAGI--PRRDASVGQPM 476
+ + G ++RY RN + P G S M+P+ D G+G+ P D + +
Sbjct: 506 LRGY-----GQSFRYMNNARNGLESPVLPQGLVSPMMPLAFD-GSGVSSPPNDIQRSRAV 559
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P + L++ALA+AS E QR +LGE LYPLVE+LE AAKVTGMLLEMDQ EVLHL+ESP+
Sbjct: 560 PTSTLASALASASLENQRVMLGEQLYPLVERLEPSHAAKVTGMLLEMDQPEVLHLIESPD 619
Query: 537 ALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
LK+KVAEAMEVLR + + +DQL +L+L +
Sbjct: 620 DLKSKVAEAMEVLRKASSEP--ELSDQLGALTLTK 652
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 124 TVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVN 178
TVA+ T ++++V +LD+S + L ++FG+ + S V RD + S + +VN
Sbjct: 23 TVAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVN 82
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
F + DA A+E LN + + + + + ++ K N++
Sbjct: 83 FSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDP----------------SIRKSGYANVF 126
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L++ F+ FGT+ SCKV D +G SKG GFV F + E A ++ ++NG
Sbjct: 127 IKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGM 186
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQM 327
++ K +YV R +ER +QF+ +
Sbjct: 187 LLNDKQVYVGHFIRHQERIRANGSQFTNV 215
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/366 (74%), Positives = 319/366 (87%), Gaps = 1/366 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARAL++LNFTP+N K IRIMYS+RDPS RKSG NIFIKNLDKSID+KAL+DTFS F
Sbjct: 91 ADAARALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVF 150
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+AT+ SG+SKG+GFVQFE +E+AQNAI KLNGML+NDK+V+VG F+RKQERE
Sbjct: 151 GNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQEREN 210
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
V+ KFNNV+VKNL ESTT+++LK+IFG++G ITS VVMR+GDGKS+CFGFVNFEN DD
Sbjct: 211 VSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDD 270
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA+AVE LNGKKFDD+EWYV +AQKKSERE ELK +FE+ +KE DK QG NLY+KNL D
Sbjct: 271 AARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDD 330
Query: 245 SI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SI DDEKLKE+F++FGTITSCKVMRD +G+SKGSGFVAF + E+ASRAL MNGKMI SK
Sbjct: 331 SIDDDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSK 390
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKEERRARLQAQFSQMRP+ M PSV PRMPMYPPG G+GQQ YGQ PPA
Sbjct: 391 PLYVALAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAF 450
Query: 364 IPPQAG 369
+ PQ G
Sbjct: 451 VNPQLG 456
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 160/286 (55%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +LD S+ L D FS G+++S ++ D + + S G+ +V F + A A++
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN IN K + + + R+ + K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 100 LNFTPINGKPIRIMY----SNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V + G+SK +GFV FE + A A+ LNG +D++ YVG +K ERE + G
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQEREN-VSGN 214
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KF N+Y+KNL +S ++ LKE+F +FG ITS VMR+ G S+ GFV
Sbjct: 215 ---------PKFN--NVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFV 263
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F P++A+RA+ ++NGK K YV AQ+K ER L+ +F +
Sbjct: 264 NFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEK 309
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
FQ +LY+ +L S+ D +L ++FS+ G++ S +V RD + +S G +V FS+P +A+R
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I KP+ + + R R
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSR 122
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 318/576 (55%), Positives = 399/576 (69%), Gaps = 29/576 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA A++ LNFTPLN KSIR+M+S+RDPSIRKSG N+FIKNLD SID+K LHDTF++FG
Sbjct: 59 AANAMEHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGF 118
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LS K+A D GQSKG+GFVQF+N+ESAQNAI +LNGMLINDK+V+VG F+ +QER V
Sbjct: 119 VLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVD 178
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKN E+ TDEDL+++F YGTITSAVVM+D DGKS+CFGFVNFE+ D A
Sbjct: 179 GSPKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAV 238
Query: 187 KAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE LNG DD+ YVG+AQ+K+ERE ELK +FE +K+ G NLY+KNL +
Sbjct: 239 AAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYN 298
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
I+D+KLKELFSEFGTITSCKVM +P+G SKG GFVAFS P A+RAL EMNGKMI +PL
Sbjct: 299 INDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPL 358
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAII 364
YVAVAQRKEER+A L+AQFSQM + +P +P+Y PG G Q L YGQ P+++
Sbjct: 359 YVAVAQRKEERKALLEAQFSQMHALYAITHLPTGIPVYHPGAPRHGPQALHYGQGAPSLV 418
Query: 365 PPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
PQ G+G+QQQL+PGM P A PNF +P +Q Q P R + + Q M
Sbjct: 419 APQPTGYGFQQQLLPGMHPGVA--PNFIMPY---HRQRQVPPRLRN---LHRNQ-----M 465
Query: 424 PHQMPPRGHAYRYPLGRNMQD---FPFDMGAGSMLPVPVDMGAGI---PRRDASVGQPMP 477
H +G Y G+N D P + A M+P+P D G+GI P + G +
Sbjct: 466 LHLNSSQGFGYM-GNGQNGMDPSVVPHGIVA-PMMPLPFD-GSGISAAPTYNQHPGGSLS 522
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDA--AAKVTGMLLEMDQTEVLHLLESP 535
T ++ALA+A+PE Q +L E LYPLV+++ ++ KVTGMLLEMDQ+EV+HL ESP
Sbjct: 523 NT-FASALASATPENQHLMLAEHLYPLVDEITKNHHQTEKVTGMLLEMDQSEVIHLTESP 581
Query: 536 EALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
E LK KV EAM+ L A + DQL S+SL E
Sbjct: 582 EDLKIKVFEAMQALGEAA-PDSEEVGDQLGSVSLKE 616
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 16/184 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+++V +L+ + + L ++F G I S V RD +S + +VNF N DAA A+E L
Sbjct: 7 SLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHL 66
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N + + V + + ++ K N++IKNL SID++ L
Sbjct: 67 NFTPLNGKSIRVMFSNRDP----------------SIRKSGYANVFIKNLDISIDNKTLH 110
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ F+ FG + S KV D G SKG GFV F E A A+ E+NG +I K +YV +
Sbjct: 111 DTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVN 170
Query: 313 KEER 316
++ER
Sbjct: 171 RQER 174
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 323/410 (78%), Positives = 353/410 (86%), Gaps = 4/410 (0%)
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
MRDGDGKS+CFGFVNFENADDAAKA EALNGKKFDD+EW+VGKAQKK ERE ELK +FEQ
Sbjct: 1 MRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 60
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
+MKE DKFQG NLYIKNL DSI DEK+KELFS FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 61 SMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 120
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
TPEEASRAL EMNGKM+ SKPLYVA+AQRKE+RRARLQAQFSQMRPVAM PSV RMPMY
Sbjct: 121 TPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSV-GRMPMY 179
Query: 344 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 403
PP GLGQQ YGQ PPAI+PPQ GFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR
Sbjct: 180 PPTGPGLGQQIFYGQGPPAIMPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQR 239
Query: 404 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 463
G R AG QQ+QQP+ +M QM PRG YRYP GR + D P AG ML VP DMG
Sbjct: 240 -PGGRRAGTGQQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMG- 297
Query: 464 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
G+P RDA++ QP+PI AL+TALANA+P+QQRT+LGE+LYPLVEQLE +AAAKVTGMLLEM
Sbjct: 298 GMPMRDAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEM 357
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENL 573
DQTEVLHLLESPEALK+KV EAMEVLR+V QQQA ADQLASLSLN+NL
Sbjct: 358 DQTEVLHLLESPEALKSKVNEAMEVLRTV-QQQATGTADQLASLSLNDNL 406
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 14/162 (8%)
Query: 75 DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-- 132
DG G+S+ FGFV FEN + A A + LNG +DK+ FVG +K ERE V +K +F
Sbjct: 3 DGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYERE-VELKQRFEQS 61
Query: 133 -----------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
N+++KNLD+S DE +K++F +GTITS VMRD +G S+ GFV F
Sbjct: 62 MKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFST 121
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
++A++A+ +NGK + YV AQ+K +R L+ QF Q
Sbjct: 122 PEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQ 163
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD SI + + + FS FG I SCK+ D +G S+G GFV F E A A+ ++
Sbjct: 73 NLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEM 132
Query: 102 NGMLINDKQVFVGHFLRKQER 122
NG ++ K ++V RK++R
Sbjct: 133 NGKMVASKPLYVALAQRKEDR 153
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 312/569 (54%), Positives = 384/569 (67%), Gaps = 70/569 (12%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RA++ LNF P+N K +RIM+S+RDPSIRKSG+GN+F+KNLDKSID+KALHD FS +G
Sbjct: 69 ASRAIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGK 128
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIA D S SKG GFVQF+ +++A AI+K+NG ++DKQ+FVG F+R+QER+ A
Sbjct: 129 ILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPPA 188
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+KFNNVFVKNL E TTDEDL+K+FG +G I+SAVVM++ DGKSKCFGFVNFEN +DA
Sbjct: 189 --SKFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAV 246
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE L+G F D+E YV +AQKK+ERE ELK +FE K+T DK NLY+KNL D I
Sbjct: 247 KAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDK-SPTNLYLKNLDDGI 305
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLK++FS FG +TSCKVMRDP G SKGSGFVAFST + A RA+A+MNGKMI SKPLY
Sbjct: 306 DDEKLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLY 365
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQ+KEER+A+L+AQF+ PV P PP S +GQQ LY + P +
Sbjct: 366 VAMAQKKEERKAKLEAQFASRGPVNFPP---------PPLYSAVGQQLLYSRPAPMVPQQ 416
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
AGF +RP MP FF P Q QQ
Sbjct: 417 PAGFAM-------VRPNVGQMPGFFPP---------------------QRQQ-------- 440
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
GHA R P + MQ G+ S P + G + L++ LA
Sbjct: 441 ----GHA-RVPFQQFMQRESTFHGSNSRTP--------------AYGNNSFLAVLASHLA 481
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
+A+PEQQR +LGE LYPLV+ +E + A K+TGMLLEMDQTEVLHLLESPEAL KV+EAM
Sbjct: 482 SATPEQQRIMLGEQLYPLVDCIEHNHAGKITGMLLEMDQTEVLHLLESPEALNLKVSEAM 541
Query: 547 EVLRSVAQQQANNPADQLASLSLNENLVS 575
EVLR QQ P D LASLSL++ L+S
Sbjct: 542 EVLRD--SQQRLIPPD-LASLSLDDPLMS 567
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 156/287 (54%), Gaps = 19/287 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD S++ + D F GN++S ++ D + +S G+ +V + N + A AI++L
Sbjct: 17 LYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASRAIEEL 76
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N M +N K V + R+ K+ N+FVKNLD+S ++ L +F YG I S
Sbjct: 77 NFMPVNGKPVRIMF----SYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILSC 132
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+ D SK GFV F+ D A A+E +NG D++ +VG ++ ER+
Sbjct: 133 KIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERD------- 185
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
KF N+++KNL + DE L++LF FG I+S VM++ G SK GFV
Sbjct: 186 -----PPASKFN--NVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVN 238
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F PE+A +A+ +++G K LYV+ AQ+K ER A L+A+F R
Sbjct: 239 FENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHER 285
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/362 (71%), Positives = 313/362 (86%), Gaps = 2/362 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL++LNFT +N K IRIM+SHRDPSIRKSGT NIFIKNLDKSID+KALHDTF++FGN
Sbjct: 78 ATRALELLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGN 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SGQSKG+GFVQFE +ESAQNAI+K+NGML+NDKQVFVG F+R+QER+
Sbjct: 138 ILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAG 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+KFNNV+VKNL + TTD++LKK+FG +G I+SAVVMRD DGKSKCFGFVNFE+ DDAA
Sbjct: 198 GVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAA 257
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEAL GKKFD++EWYVG+AQKKSERE EL+ +FEQ KE ++K+QG+NLY+KNL D++
Sbjct: 258 KAVEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTV 317
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEK++ELF+E+GTITSCKVMRD G SKGSGFVAFS+P+EA+RA+ EMNGKM+ +KPLY
Sbjct: 318 DDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLY 377
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF-LYGQAPPAIIP 365
VA+AQRKEERR RLQA F+QMR +GP+VP +PMY PG G+G Q YGQ PP IP
Sbjct: 378 VALAQRKEERRMRLQAAFAQMR-THVGPAVPTSLPMYHPGAPGMGPQMSYYGQHPPGPIP 436
Query: 366 PQ 367
Q
Sbjct: 437 LQ 438
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 289
+F +LY+ +L ++ + +L E+FS+ G + S +V RD + S G +V ++ ++A+
Sbjct: 20 QFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDAT 79
Query: 290 RALAEMNGKMIVSKPLYVAVAQR 312
RAL +N + KP+ + + R
Sbjct: 80 RALELLNFTGVNGKPIRIMFSHR 102
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/581 (53%), Positives = 403/581 (69%), Gaps = 22/581 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RA+D LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFS+FG
Sbjct: 111 ASRAMDSLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGT 170
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---E 123
ILSCK+A D G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R E
Sbjct: 171 ILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSE 230
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ A+ +F NV+VKNL + TD++LKK FG+YG I+SAVVM+D G S+ FGFVNFE+ +
Sbjct: 231 SGAV-PRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPE 289
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AA AVE +NG + YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL
Sbjct: 290 AAAVAVEKMNGISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLD 349
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFVA+S+PEEASRAL+EMNGKMI K
Sbjct: 350 DSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRK 409
Query: 304 PLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP---MYPPGP--SGLGQQFLY- 356
PLYVA AQRKEERRA LQ F+ +R P M P +P MP +PPG SG +Y
Sbjct: 410 PLYVAFAQRKEERRAHLQTLFTHIRSPGTMSP-IPSPMPGFHHHPPGGPMSGPHHPTMYI 468
Query: 357 GQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGAGPV 413
GQ ++PPQ G+GYQ Q +PG+RP P N+ + P+ Q Q G R G RRGA +
Sbjct: 469 GQNGQGLVPPQPMGYGYQVQFMPGVRPGAGPA-NYMMPFPLQRQTQPGPRVGFRRGANNM 527
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPVDMGAGIPRRDASV 472
QQ Q I+ P RY G + + A ++P+P++ A
Sbjct: 528 QQHFQQQQILQQNASP---GMRYMGGAGNRRNGMEASAPQGIIPLPLNASAISHNAPQHP 584
Query: 473 GQP--MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 530
+P + I+ L++ LA A PE+ +LGE+LYPLV Q E + AAKVTGMLLEMDQ E+LH
Sbjct: 585 HKPPLLTISKLASDLALAPPEKHPQMLGENLYPLVAQQEPEYAAKVTGMLLEMDQAEILH 644
Query: 531 LLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
LLESPEALKAKV+EA++VLR A A + D +LS E
Sbjct: 645 LLESPEALKAKVSEALDVLRLSANAPAVSSVDDQFALSSTE 685
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 158/287 (55%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++++ +LD S+D L D F+ + + ++ D + +S G+ +V F N E A A+D L
Sbjct: 59 SLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDSL 118
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N I D+ + + R+ + NVF+KNLD S ++ L + F +GTI S
Sbjct: 119 NYAPIRDRPIRI----MLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSC 174
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ +R + G
Sbjct: 175 KVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESG-- 232
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
V +F N+Y+KNL I D++LK+ F ++G I+S VM+D SG S+ GFV
Sbjct: 233 ------AVPRFT--NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 284
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F +PE A+ A+ +MNG + LYV AQ+K ER L+ +F Q R
Sbjct: 285 FESPEAAAVAVEKMNGISLGEDVLYVGRAQKKSEREEELRRKFEQER 331
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+++
Sbjct: 58 SSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDS 117
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN DR + + + KG N++IKNL SID++ L
Sbjct: 118 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDPSIDNKAL 161
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 162 YETFSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 221
Query: 312 RKEER 316
R+++R
Sbjct: 222 RRQDR 226
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/564 (54%), Positives = 387/564 (68%), Gaps = 41/564 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN+TPL + IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG
Sbjct: 102 AYRAMEALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT 161
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ET 124
ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QER +
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDE 221
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+F NV+VKNL + +++L+K FG++G I+SAVVMRD G S+CFGFVNFE +
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AVE +NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL D
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDD 341
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI KP
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKP 401
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP-SGL-----------GQ 352
LY+A+AQRKE+RRA LQA FSQ+R PGP SG Q
Sbjct: 402 LYIALAQRKEDRRAHLQALFSQIR---------------APGPMSGFHHPPGGPMSGPPQ 446
Query: 353 QFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRG 409
GQ +++P Q G+G+Q Q +PGMRP P NF + P+ Q Q G R G RRG
Sbjct: 447 HMYVGQNGASLVPSQPIGYGFQPQFMPGMRPGSGP-GNFVMPYPLQRQPQTGPRMGFRRG 505
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGA-GSMLPVPVDMGAGIP 466
A +Q Q +M ++ P G Y GRN D G ++P+P+D + I
Sbjct: 506 ATNMQHHIQQQQLM-NRNPTPGMRYMNGAGNGRNGMDSSVPQGILPPIMPLPID-ASSIS 563
Query: 467 RRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ
Sbjct: 564 HQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQA 620
Query: 527 EVLHLLESPEALKAKVAEAMEVLR 550
E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 621 EILHLMESPEALKSKVSEALDVLR 644
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 151/287 (52%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D F N++S ++ D + +S G+ ++ F N A A++ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N + ++ + + R+ + N+F+KNLD S ++ L + F +GTI S
Sbjct: 110 NYTPLFERPIRI----MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ ER
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER-------- 217
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
A E + N+Y+KNL I +++L++ F +FG I+S VMRD SG S+ GFV
Sbjct: 218 --ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F E A+ A+ +MNG + LYV AQ+K ER L+ +F Q R
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 17/193 (8%)
Query: 125 VAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N +
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DA +A+EALN +R + + + KG N++IKNL
Sbjct: 101 DAYRAMEALNYTPLFERPIRIMLSNRDPSTRLSGKG----------------NIFIKNLD 144
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++ K
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Query: 304 PLYVAVAQRKEER 316
++V R++ER
Sbjct: 205 QVFVGHFIRRQER 217
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 306/563 (54%), Positives = 383/563 (68%), Gaps = 39/563 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG
Sbjct: 102 AYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT 161
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ET 124
ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QER +
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDE 221
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+F NV+VKNL + +++L+K FG++G I+SAVVMRD G S+CFGFVNFE +
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AVE +NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL D
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDD 341
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI KP
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKP 401
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP-SGL-----------GQ 352
LY+A+AQRKE+RRA LQA FSQ+R PGP SG Q
Sbjct: 402 LYIALAQRKEDRRAHLQALFSQIR---------------APGPMSGFHHPPGGPMPGPPQ 446
Query: 353 QFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRG 409
GQ +++P Q G+G+Q Q +PGMRP P NF V P+ Q Q G R G RRG
Sbjct: 447 HMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRG 505
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
A VQQ Q +M H+ P G Y GRN D G + + I
Sbjct: 506 ATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISH 564
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
+ A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E
Sbjct: 565 QKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAE 621
Query: 528 VLHLLESPEALKAKVAEAMEVLR 550
+LHL+ESPEALK+KV+EA++VLR
Sbjct: 622 ILHLMESPEALKSKVSEALDVLR 644
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D F N++S ++ D + +S G+ ++ F N A A++ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N + D+ + + R+ + N+F+KNLD S ++ L + F +GTI S
Sbjct: 110 NYTPLFDRPIRI----MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ ER
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER-------- 217
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
A E + N+Y+KNL I +++L++ F +FG I+S VMRD SG S+ GFV
Sbjct: 218 --ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F E A+ A+ +MNG + LYV AQ+K ER L+ +F Q R
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 124 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNP 99
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +A+EALN DR + + + KG N++IKNL
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNL 143
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 303 KPLYVAVAQRKEER 316
K ++V R++ER
Sbjct: 204 KQVFVGHFIRRQER 217
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 306/563 (54%), Positives = 383/563 (68%), Gaps = 39/563 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG
Sbjct: 102 AYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT 161
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ET 124
ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QER +
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDE 221
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+F NV+VKNL + +++L+K FG++G I+SAVVMRD G S+CFGFVNFE +
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AVE +NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL D
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDD 341
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI KP
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKP 401
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP-SGL-----------GQ 352
LY+A+AQRKE+RRA LQA FSQ+R PGP SG Q
Sbjct: 402 LYIALAQRKEDRRAHLQALFSQIR---------------APGPMSGFHHPPGGPMPGPPQ 446
Query: 353 QFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQGQRPGGRRG 409
GQ +++P Q G+G+Q Q +PGMRP P NF VP + Q Q G R G RRG
Sbjct: 447 HMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYSLQRQPQTGPRMGFRRG 505
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
A VQQ Q +M H+ P G Y GRN D G + + I
Sbjct: 506 ATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISH 564
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
+ A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E
Sbjct: 565 QKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAE 621
Query: 528 VLHLLESPEALKAKVAEAMEVLR 550
+LHL+ESPEALK+KV+EA++VLR
Sbjct: 622 ILHLMESPEALKSKVSEALDVLR 644
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D F N++S ++ D + +S G+ ++ F N A A++ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N + D+ + + R+ + N+F+KNLD S ++ L + F +GTI S
Sbjct: 110 NYTPLFDRPIRI----MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ ER
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER-------- 217
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
A E + N+Y+KNL I +++L++ F +FG I+S VMRD SG S+ GFV
Sbjct: 218 --ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F E A+ A+ +MNG + LYV AQ+K ER L+ +F Q R
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 124 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNP 99
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +A+EALN DR + + + KG N++IKNL
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNL 143
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 303 KPLYVAVAQRKEER 316
K ++V R++ER
Sbjct: 204 KQVFVGHFIRRQER 217
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 259/354 (73%), Positives = 301/354 (85%), Gaps = 1/354 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA++ LNF PLNNK IR+MYS+RDPS R+SG+ NIFIKNLDK+ID+K LHDTFS+FG
Sbjct: 176 AARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA 235
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D GQSKGFGFVQ+E +ESAQ+A+ LNGMLINDK V+VG FLRKQER+ +
Sbjct: 236 ILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSS 295
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNNVFVKNL ESTT EDL K+F EYGTITSAVVM DGKS+CFGFVNFE+ DDAA
Sbjct: 296 DKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAA 355
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE LNGKK +D+EWYVG+AQKKSERE +LK +FEQ+MK+ DK+QG NLY+KNL D I
Sbjct: 356 RAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L+ELFS FG ITSCK+MRD +G+SKGSGFV+FST EEAS+AL EMNGKMI KPLY
Sbjct: 416 TDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLY 475
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 360
VA AQRKEER+A LQAQFSQMRPV M PS+ PR+PMYPP P+ LGQQ YGQAP
Sbjct: 476 VAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPPMPT-LGQQLFYGQAP 528
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 191
+++V +L+ + TD L ++F + G + S V RD + + S + +VN+ N DAA+A+EA
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +++ V + + + N++IKNL +ID++ L
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSRRS----------------GSANIFIKNLDKTIDNKTL 226
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 227 HDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFL 286
Query: 312 RKEER 316
RK+ER
Sbjct: 287 RKQER 291
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L ++ D +L ELFS+ G + S +V RD S S G +V +S P +A+RA+
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N + +KP+ V + R R
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSR 205
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/581 (53%), Positives = 402/581 (69%), Gaps = 26/581 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RA++ LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFSSFG
Sbjct: 112 ASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT 171
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---E 123
ILSCK+A D G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R E
Sbjct: 172 ILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE 231
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ A+ + F NV+VKNL + TD++LKK FG+YG I+SAVVM+D G S+ FGFVNF + +
Sbjct: 232 SGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 290
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AA AVE +NG + YVG+AQKKS+RE+EL+ +FEQ +K QG NLY+KNL
Sbjct: 291 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLD 350
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFVA+S PEEA A+ EMNGKMI K
Sbjct: 351 DSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRK 410
Query: 304 PLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP---MYPPGP--SGLGQQFLYG 357
PLYVA+AQRKEER+A LQ+ F+Q+R P M P VP M +PPG SG G
Sbjct: 411 PLYVALAQRKEERQAHLQSLFTQIRSPGTMSP-VPSPMSGFHHHPPGGPMSGPHHPMFIG 469
Query: 358 QAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGAGPVQ 414
++P Q G+GYQ Q +PGMRP P PNF + P+ Q Q G R G RRGA +Q
Sbjct: 470 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQ 528
Query: 415 QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPVDMGA---GIPRRDA 470
Q Q Q + +A R+ G + + A ++P+P++ A P+R +
Sbjct: 529 QQFQ------QQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQR-S 581
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 530
P+ I+ L++ LA ASP++ +LG+ LYPLVEQ E AAKVTGMLLEMDQ E+LH
Sbjct: 582 HKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILH 641
Query: 531 LLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
LLESPEALKAKV+EA++VLR A A + D +LS +E
Sbjct: 642 LLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 682
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 157/287 (54%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++++ +LD S++ L D F+ + + ++ D + +S G+ +V F N E A A++ L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N I D+ + + R+ + NVF+KNLD S ++ L + F +GTI S
Sbjct: 120 NYAPIRDRPIRI----MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 175
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ +R + G
Sbjct: 176 KVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESG-- 233
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
V F N+Y+KNL I D++LK+ F ++G I+S VM+D SG S+ GFV
Sbjct: 234 ------AVPSFT--NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 285
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F +PE A+ A+ +MNG + LYV AQ+K +R L+ +F Q R
Sbjct: 286 FVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 332
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+E+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN DR + + + KG N++IKNL SID++ L
Sbjct: 119 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDASIDNKAL 162
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 312 RKEER 316
R+++R
Sbjct: 223 RRQDR 227
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/581 (53%), Positives = 402/581 (69%), Gaps = 26/581 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RA++ LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFSSFG
Sbjct: 98 ASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT 157
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---E 123
ILSCK+A D G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R E
Sbjct: 158 ILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE 217
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ A+ + F NV+VKNL + TD++LKK FG+YG I+SAVVM+D G S+ FGFVNF + +
Sbjct: 218 SGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 276
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AA AVE +NG + YVG+AQKKS+RE+EL+ +FEQ +K QG NLY+KNL
Sbjct: 277 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLD 336
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFVA+S PEEA A+ EMNGKMI K
Sbjct: 337 DSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRK 396
Query: 304 PLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP---MYPPGP--SGLGQQFLYG 357
PLYVA+AQRKEER+A LQ+ F+Q+R P M P VP M +PPG SG G
Sbjct: 397 PLYVALAQRKEERQAHLQSLFTQIRSPGTMSP-VPSPMSGFHHHPPGGPMSGPHHPMFIG 455
Query: 358 QAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGAGPVQ 414
++P Q G+GYQ Q +PGMRP P PNF + P+ Q Q G R G RRGA +Q
Sbjct: 456 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQ 514
Query: 415 QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPVDMGA---GIPRRDA 470
Q Q Q + +A R+ G + + A ++P+P++ A P+R +
Sbjct: 515 QQFQ------QQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQR-S 567
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 530
P+ I+ L++ LA ASP++ +LG+ LYPLVEQ E AAKVTGMLLEMDQ E+LH
Sbjct: 568 HKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILH 627
Query: 531 LLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
LLESPEALKAKV+EA++VLR A A + D +LS +E
Sbjct: 628 LLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 157/287 (54%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++++ +LD S++ L D F+ + + ++ D + +S G+ +V F N E A A++ L
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N I D+ + + R+ + NVF+KNLD S ++ L + F +GTI S
Sbjct: 106 NYAPIRDRPIRI----MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 161
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ +R + G
Sbjct: 162 KVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESG-- 219
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
V F N+Y+KNL I D++LK+ F ++G I+S VM+D SG S+ GFV
Sbjct: 220 ------AVPSFT--NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 271
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F +PE A+ A+ +MNG + LYV AQ+K +R L+ +F Q R
Sbjct: 272 FVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 318
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+E+
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN DR + + + KG N++IKNL SID++ L
Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDASIDNKAL 148
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 312 RKEER 316
R+++R
Sbjct: 209 RRQDR 213
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 308/581 (53%), Positives = 401/581 (69%), Gaps = 26/581 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RA++ LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFSSFG
Sbjct: 98 ASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT 157
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---E 123
ILSCK+A D G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R E
Sbjct: 158 ILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE 217
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ A+ + F NV+VKNL + TD++LKK FG+YG I+SAVVM+D G S+ FGFVNF + +
Sbjct: 218 SGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 276
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AA AVE +NG + YVG+AQKKS+RE+EL+ +FEQ +K QG NLY+KNL
Sbjct: 277 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLD 336
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFVA+S PEEA A+ EMNGKMI K
Sbjct: 337 DSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRK 396
Query: 304 PLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP---MYPPGP--SGLGQQFLYG 357
PLYVA+AQRKEER+A LQ+ F+Q+R P M P VP M +PPG SG G
Sbjct: 397 PLYVALAQRKEERQAHLQSLFTQIRSPGTMSP-VPSPMSGFHHHPPGGPMSGPHHPMFIG 455
Query: 358 QAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGAGPVQ 414
++P Q G+GYQ Q +PGMRP P PNF + P+ Q Q G R G RRGA +Q
Sbjct: 456 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQ 514
Query: 415 QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPVDMGA---GIPRRDA 470
Q Q Q + +A R+ G + + A ++P+P++ A P+R +
Sbjct: 515 QQFQ------QQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQR-S 567
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 530
P+ I+ L++ LA ASP++ +LG+ LYPLVEQ E AKVTGMLLEMDQ E+LH
Sbjct: 568 HKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANPAKVTGMLLEMDQAEILH 627
Query: 531 LLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
LLESPEALKAKV+EA++VLR A A + D +LS +E
Sbjct: 628 LLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 157/287 (54%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++++ +LD S++ L D F+ + + ++ D + +S G+ +V F N E A A++ L
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N I D+ + + R+ + NVF+KNLD S ++ L + F +GTI S
Sbjct: 106 NYAPIRDRPIRI----MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 161
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ +R + G
Sbjct: 162 KVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESG-- 219
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
V F N+Y+KNL I D++LK+ F ++G I+S VM+D SG S+ GFV
Sbjct: 220 ------AVPSFT--NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 271
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F +PE A+ A+ +MNG + LYV AQ+K +R L+ +F Q R
Sbjct: 272 FVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 318
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+E+
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN DR + + + KG N++IKNL SID++ L
Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDASIDNKAL 148
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 312 RKEER 316
R+++R
Sbjct: 209 RRQDR 213
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 301/563 (53%), Positives = 378/563 (67%), Gaps = 44/563 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG
Sbjct: 102 AYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT 161
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ET 124
ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QER +
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDE 221
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+F NV+VKNL + +++L+K FG++G I+SAVVMRD G S+CFGFVNFE +
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AVE +NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL D
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDD 341
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI KP
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKP 401
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP-SGL-----------GQ 352
LY+A+AQRKE+RRA LQ + PGP SG Q
Sbjct: 402 LYIALAQRKEDRRAHLQIR--------------------APGPMSGFHHPPGGPMPGPPQ 441
Query: 353 QFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRG 409
GQ +++P Q G+G+Q Q +PGMRP P NF V P+ Q Q G R G RRG
Sbjct: 442 HMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRG 500
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
A VQQ Q +M H+ P G Y GRN D G + + I
Sbjct: 501 ATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISH 559
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
+ A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E
Sbjct: 560 QKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAE 616
Query: 528 VLHLLESPEALKAKVAEAMEVLR 550
+LHL+ESPEALK+KV+EA++VLR
Sbjct: 617 ILHLMESPEALKSKVSEALDVLR 639
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D F N++S ++ D + +S G+ ++ F N A A++ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N + D+ + + R+ + N+F+KNLD S ++ L + F +GTI S
Sbjct: 110 NYTPLFDRPIRI----MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ ER
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER-------- 217
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
A E + N+Y+KNL I +++L++ F +FG I+S VMRD SG S+ GFV
Sbjct: 218 --ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F E A+ A+ +MNG + LYV AQ+K ER L+ +F Q R
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 124 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNP 99
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +A+EALN DR + + + KG N++IKNL
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNL 143
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 303 KPLYVAVAQRKEER 316
K ++V R++ER
Sbjct: 204 KQVFVGHFIRRQER 217
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 299/484 (61%), Positives = 353/484 (72%), Gaps = 23/484 (4%)
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GMLINDKQV V F+R+QERE TKFNNVFVKNL E TTDEDL ++FG +G I+SAV
Sbjct: 1 GMLINDKQVVVTPFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAV 60
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
VMRD +G SKCFGFVNF+NADDAAKAVE +NGK F+D+EWYVG+AQKKSERE ELK +FE
Sbjct: 61 VMRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFE 120
Query: 223 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 282
Q KE +KFQG+NLY+KN+ DSIDDEKLKELFS FGT+ SCK+MR P G GSGFVA
Sbjct: 121 QLRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVAL 180
Query: 283 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----P 338
S+ +EA RA+ EMNGKM+ SKPLYVAVAQRK+ERRA+LQAQF+Q+R V +VP
Sbjct: 181 SSKDEAMRAVNEMNGKMVGSKPLYVAVAQRKDERRAKLQAQFAQLRNVVA--NVPQMNGS 238
Query: 339 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 397
P+YPP P +GQQ YGQ P ++PPQ +GFGYQ +VPGMRP G MPN+F+P V +
Sbjct: 239 PGPLYPPRPPAMGQQVYYGQPPHGLLPPQPSGFGYQHPMVPGMRPGGPQMPNYFLPAVQR 298
Query: 398 -GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA--YRYPLGRNMQDFPFDMGAGSM 454
GQQGQR G RR GP QQ P+M QM PRG++ RY + G S+
Sbjct: 299 PGQQGQRMGNRR-PGPPFLHQQQQPLMQQQMAPRGNSRPMRYSQSSRVAPDVSLQGYSSL 357
Query: 455 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
DMG +P + G MP ++ALA+ASPEQQR +LGE LYPLV++LE D A
Sbjct: 358 -----DMGGALP-NSSDTGLYMPAL--ASALASASPEQQRVMLGEQLYPLVDRLEHDHAG 409
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA---NNPADQLASLSLNE 571
KVTGMLLEMDQTEVLHL+ESPEALKAKVAEAM+VL+ +AQ A N D ASLSLNE
Sbjct: 410 KVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLQ-MAQANAGASTNGIDHFASLSLNE 468
Query: 572 NLVS 575
L S
Sbjct: 469 PLAS 472
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+F+KNL + + L + F FG I S + D +G SK FGFV F+N + A A++ +
Sbjct: 31 NVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKNADDAAKAVENI 90
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG + NDK+ +VG +K ERE +K KF N+++KN+D+S DE L
Sbjct: 91 NGKVFNDKEWYVGRAQKKSEREA-ELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKL 149
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
K++F +GT+ S +MR G+ GFV + D+A +AV +NGK + YV AQ
Sbjct: 150 KELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQ 209
Query: 209 KKSEREQELKGQFEQ 223
+K ER +L+ QF Q
Sbjct: 210 RKDERRAKLQAQFAQ 224
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 288/553 (52%), Positives = 373/553 (67%), Gaps = 24/553 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA A++ LN+ PLN K IRIM+SHRDP IRK+G N+FIKNL+ SID+KALH+TFS FGN
Sbjct: 79 AANAMENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGN 138
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+A D +G SKG GFVQF+N +SA+NAI+KL+G L+NDK+V+VG+F+R QER +
Sbjct: 139 VLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSS-- 196
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV+VKNL ES T+EDLK++F +G ITS +M+D +G SK FGFVNF+++D AA
Sbjct: 197 --PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAA 254
Query: 187 KAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AVE LNG +D + +VG+AQKKSERE ELK FEQ + +KFQG NLY+KN+ S
Sbjct: 255 TAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKS 314
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+++EKLKELFSEFGTITSCKVM D G SKG GFVAF+TPEEAS+A+ EMNGK+I KP+
Sbjct: 315 LNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPV 374
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
YV+VAQRKEER+A+LQA F ++ + P QQF Y Q ++
Sbjct: 375 YVSVAQRKEERKAQLQAHFPAIQVSGGNAGYHSSVQRLAP------QQFYYEQGTFDLMA 428
Query: 366 PQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
PQ G+G++ + + + P G PN+ +P + QG G R GGR AG QQ +Q
Sbjct: 429 PQPNGYGFRPKFMSDVGP-GFVTPNYLLPYHLQRQGHPGNRMGGRP-AGNFQQVRQKKNQ 486
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
M + P +G Y G+N D G+ M P A + G P+ +L+
Sbjct: 487 MLPRNPNQGLKYN---GQNGVGMSVDPGSQLMDP---SASAATSTGNHHHG-PLSNNSLA 539
Query: 483 TALANASPEQQRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
+ALA+AS E Q +L E L+PLV +L AKVT MLLEMDQ+EV+HL+ESPE LK K
Sbjct: 540 SALASASQENQHRMLEEHLHPLVGRLAPTIQTAKVTRMLLEMDQSEVIHLIESPEELKMK 599
Query: 542 VAEAMEVLRSVAQ 554
VAEAM LR +Q
Sbjct: 600 VAEAMRFLRDASQ 612
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 160/288 (55%), Gaps = 26/288 (9%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 101
+++ +L +++ L+D FS ++S ++ D QS G+G+V + N A NA++ L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 102 NGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
N + +N K ++ H R+ + KT F N+F+KNL+ S ++ L + F +G +
Sbjct: 87 NYVPLNGKPIRIMFSH------RDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVL 140
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D +G SK GFV F+N A A+E L+G+ +D++ YV G
Sbjct: 141 SCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYV--------------G 186
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
F + + + KF N+Y+KNL +S +E LK+LF+ FG ITS K+M+D +G SK GF
Sbjct: 187 YFVRCQERSSPKF--TNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGF 244
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQ 326
V F + + A+ A+ ++NG K L+V AQ+K ER A L+A F Q
Sbjct: 245 VNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQ 292
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 15/230 (6%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SA A++ L+ +N+K + + Y R N+++KNL +S ++ L F++FG
Sbjct: 165 SAKNAIEKLDGRLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTNEDLKQLFNTFG 224
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV-FVGHFLRKQERET 124
I S KI D +G SK FGFV F++ +SA A++KLNG ND +V FVG +K ERE
Sbjct: 225 VITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSERE- 283
Query: 125 VAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS 171
+K F N+++KN+D+S +E LK++F E+GTITS VM D G+S
Sbjct: 284 AELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRS 343
Query: 172 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
K GFV F ++A+KA++ +NGK + YV AQ+K ER+ +L+ F
Sbjct: 344 KGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKEERKAQLQAHF 393
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEAS 289
+F+ +LY+ +L +++D +L +LFS+ + S +V RD + S G G+V +S +A+
Sbjct: 21 RFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAA 80
Query: 290 RALAEMNGKMIVSKPLYVAVAQR 312
A+ +N + KP+ + + R
Sbjct: 81 NAMENLNYVPLNGKPIRIMFSHR 103
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/331 (77%), Positives = 285/331 (86%), Gaps = 2/331 (0%)
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
I DEKLKELFS +GTITSCKVMRDPSG+SKGSGFVAFS PEEASRAL+EMNGKM+VSKPL
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
YVA+AQRKEERRARLQAQFSQMRP+AM SV PRMPMYPPG GLGQQ YGQ PA++P
Sbjct: 61 YVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLP 120
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMP 424
PQAGFGYQQQLVPGMRP G PMPNFF+P+V QGQQGQRPG RR GA P+QQ QQP+P+M
Sbjct: 121 PQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGSRRGGAVPLQQGQQPVPLMQ 180
Query: 425 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
QM PRG YRYP GR + D F G M +P DMG G+P RDA + QP+P+ AL+TA
Sbjct: 181 QQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMG-GMPVRDAGIVQPIPVGALATA 239
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LAN+SP +QRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAE
Sbjct: 240 LANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 299
Query: 545 AMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AMEVLR+V+QQQ++NPADQLASLSLN+ LVS
Sbjct: 300 AMEVLRNVSQQQSSNPADQLASLSLNDGLVS 330
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
+DE LK++F YGTITS VMRD G SK GFV F N ++A++A+ +NGK + Y
Sbjct: 2 SDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLY 61
Query: 204 VGKAQKKSEREQELKGQFEQ 223
V AQ+K ER L+ QF Q
Sbjct: 62 VALAQRKEERRARLQAQFSQ 81
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
I + L + FS +G I SCK+ D SG SKG GFV F N E A A+ ++NG ++ K +
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 112 FVGHFLRKQER 122
+V RK+ER
Sbjct: 61 YVALAQRKEER 71
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/556 (48%), Positives = 355/556 (63%), Gaps = 44/556 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL+ LNF PL+ K IR+M+S+RDPS+RKSG N+F+KNL+ SID K L++ FSSFG
Sbjct: 91 ATCALEALNFAPLSGKHIRVMFSNRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGT 150
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD +GQSKG+GFVQ+E +ESAQ+AI++LNGML ND+++FVG +R++ RE
Sbjct: 151 ILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNRE--- 207
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV++KNL +D+DL++ F +G ITSAVVMRD +G SKCFGFVNFE + A
Sbjct: 208 --VKFTNVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFAL 265
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE-TVDKFQGLNLYIKNLGDS 245
+AV+ NGK +D+ YVG+AQKK+ER+ ELK +F+Q ++ VDK G+NLY+KN+ DS
Sbjct: 266 EAVKKANGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDS 325
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
I+DE LK LF EFG +TSCKVM D G SKGSGFV F+T E A+ MNG+++ KPL
Sbjct: 326 INDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPL 385
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
YV +AQ KEERRA L A F+Q R +AM S P QQ +G P IP
Sbjct: 386 YVGLAQPKEERRAMLMAHFAQ-RNLAMAAS-----------PYAGPQQVYFGHPAPGQIP 433
Query: 366 PQAG-FGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
PQA FG+ Q VP M P M + Q R +R GP QQ I
Sbjct: 434 PQAAVFGFPQHFVPAMGPVSPVM-------MPHNMQRSRYPRQRTGGPAAYRQQQAMIHA 486
Query: 425 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
+ H RY +P +MLP G P A V Q ++++TA
Sbjct: 487 NA----NHNIRYMPNARHGAYP------AMLP------QGFP--SAMVSQQHDGSSITTA 528
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
+A+A P Q+ +LG LY LVEQLE D A KVTGMLLEMD+ ++L LL+SPE L+AKV E
Sbjct: 529 VASAEPADQQQILGNKLYALVEQLEHDHAGKVTGMLLEMDKVKILQLLQSPEVLRAKVRE 588
Query: 545 AMEVLRSVAQQQANNP 560
AM+VL+ + + +P
Sbjct: 589 AMDVLQRTKAEGSADP 604
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 158/286 (55%), Gaps = 22/286 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L +S+D LH FS ++S ++ D SG S G+G+V F +++ A A++
Sbjct: 38 SLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALEA 97
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN ++ K + V R+ K+ N+FVKNL+ S ++L ++F +GTI S
Sbjct: 98 LNFAPLSGKHIRVMF----SNRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGTILS 153
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G+SK +GFV +E + A A+ LNG +DRE +VG ++ RE +
Sbjct: 154 CKVATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNREVKFT-- 211
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
N+YIKNL D+ L++ F+ FG ITS VMRD +G+SK GFV
Sbjct: 212 ---------------NVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFV 256
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
F PE A A+ + NGK+I K LYV AQ+K ER+A L+ +F Q
Sbjct: 257 NFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQAELKTKFKQ 302
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAV 189
++++V +L ES + L +F + + S V RD G S +G+VNF + +A A+
Sbjct: 36 ISSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCAL 95
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
EALN + V S R+ L+ K NL++KNL SID +
Sbjct: 96 EALNFAPLSGKHIRV----MFSNRDPSLR------------KSGRANLFVKNLEPSIDSK 139
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
L E+FS FGTI SCKV D +G SKG GFV + T E A A+ +NG + + ++V +
Sbjct: 140 NLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGL 199
Query: 310 AQRKEERRARL 320
R+ R +
Sbjct: 200 HMRRRNREVKF 210
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/344 (72%), Positives = 293/344 (85%), Gaps = 2/344 (0%)
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+E+A NAI+KLNGML+NDK+VFVG FLRKQ+RE A TKFNNVFVKNL ESTT+++L +
Sbjct: 6 EEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTEDNLLE 65
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
IFGEYG ITSAVVMR+GDGKSKCFGFVNFE+ + AAKAV+ LNGKKFD +EWYVGKAQKK
Sbjct: 66 IFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGKAQKK 125
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
SERE ELKG+FEQ M+E DK QG NLY+KNL DSI D+KL+ELFSEFG+ITSCKVMRDP
Sbjct: 126 SEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCKVMRDP 185
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
+G+S+GSGFVAF +P++AS+ALAEMNGKMI SKPLYVA+AQRKE+RRARLQAQFSQMRPV
Sbjct: 186 NGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFSQMRPV 245
Query: 331 AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNF 390
A+ PSV PR+PMYP G G+GQQ YGQ PP +IPPQ GFG+QQ LVPGMRP A MPNF
Sbjct: 246 AIPPSVAPRVPMYPAGAPGMGQQLFYGQPPPTLIPPQPGFGFQQPLVPGMRPGVAAMPNF 305
Query: 391 FVPVVSQGQQGQ-RPGGRRGAGPVQQTQQ-PLPIMPHQMPPRGH 432
++P+V QGQQ Q G R G GP+QQTQQ P+P++ QM P G
Sbjct: 306 YMPLVQQGQQAQRPGGRRAGGGPMQQTQQHPMPLIQQQMLPLGR 349
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 133/234 (56%), Gaps = 16/234 (6%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
+A A++ LN LN+K + + R+ + + N+F+KNL +S L + F
Sbjct: 8 AAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTEDNLLEIF 67
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
+GNI S + +G G+SK FGFV FE+ E A A+ +LNG + K+ +VG +K E
Sbjct: 68 GEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGKAQKKSE 127
Query: 122 RET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
RE A K + N+++KNLD+S D+ L+++F E+G+ITS VMRD +G
Sbjct: 128 REMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCKVMRDPNG 187
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
S+ GFV F++ DDA+KA+ +NGK + YV AQ+K +R L+ QF Q
Sbjct: 188 VSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFSQ 241
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/324 (72%), Positives = 273/324 (84%), Gaps = 2/324 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL+VLNF LNNK IR+MYS+RDPS R+SG+ NIFIKNLDK+ID+K LH+TFSSFG
Sbjct: 88 AARALEVLNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGT 147
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D +GQSKGFGFVQ++ +E+AQNAI LNGMLINDK VFVG F+RKQER+
Sbjct: 148 ILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFVRKQERDHSF 207
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKFNNVFVKNL ESTT EDL KIFGEYG ITSAVVM DGKS+CFGF+NFEN D A+
Sbjct: 208 DKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAAS 267
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LNGKK +D+EWYVG+AQKKSERE ELK +FEQ++K+ DK+QGLNLY+KNL DSI
Sbjct: 268 HAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSI 327
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L ELFS FG ITS KVMRD +G+SKGSGFVAFST EEAS+AL EMNGKMI KPLY
Sbjct: 328 GDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 387
Query: 307 VAVAQRKEERRARLQAQFSQMRPV 330
VA AQRKE+R+A LQ + ++PV
Sbjct: 388 VAFAQRKEDRKAMLQV--TVLKPV 409
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 191
+++V +L+ + +D L ++F + G + S V RD + S + +VN+ N DAA+A+E
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +++ V + + + N++IKNL +ID++ L
Sbjct: 95 LNFAALNNKPIRVMYSNRDPSSRRS----------------GSANIFIKNLDKTIDNKTL 138
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E FS FGTI SCKV D +G SKG GFV + E A A+ +NG +I KP++V
Sbjct: 139 HETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFV 198
Query: 312 RKEER 316
RK+ER
Sbjct: 199 RKQER 203
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L ++ D +L ELFS+ G + S +V RD S S G +V +S P +A+RAL
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N + +KP+ V + R R
Sbjct: 95 LNFAALNNKPIRVMYSNRDPSSR 117
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 271/547 (49%), Positives = 349/547 (63%), Gaps = 51/547 (9%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNFTPL K IR+M+S+RDPS+RKSG N+F+KNL+ +ID K L++ FSSFG
Sbjct: 89 ATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGA 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD +GQSKG+GFVQ+E +ESA+ AI+ LNGML N++++FVG +R+++RE
Sbjct: 149 ILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV-- 206
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV++KNL +++DL++ F +G ITSAVVMRD DG SKCFGFVNF+ + A
Sbjct: 207 ---KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAI 263
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE NGK D+ YVG+AQKK ER+ ELK +F + VDK G+NLY+KN+ D I
Sbjct: 264 EAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGI 323
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+DE LK+LF EFG + SCKVM D G SKGSGFV+F+T E RA+ MNG+++ KPLY
Sbjct: 324 NDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLY 383
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ--APPAII 364
V +AQ KEER+A L A F+Q R +AM S Y GP QQ +G +P I
Sbjct: 384 VGLAQPKEERKAMLMAHFAQ-RNLAMAAS------QY-AGP----QQVYFGHPSSPGPIA 431
Query: 365 PPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
PPQ A FG+ Q VPGM P PV+ QRP G P +Q Q +
Sbjct: 432 PPQGAVFGFPQHFVPGMGP--------ISPVMMPPHNMQRP-RYPGPAPYRQQQAMIHAN 482
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
+ MP N + P+ P GAG A+ Q ++ +T
Sbjct: 483 ANHMP------------NARPGPYPAMPPQAFP-----GAG-----ATAWQQHAVSRTTT 520
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
A+A+A P Q +LG LY LVEQLERD A KVTGMLLEMD+ E+L LL SPEAL+AKV
Sbjct: 521 AVASAGPADQHQILGNKLYALVEQLERDHAGKVTGMLLEMDKAEILQLLRSPEALRAKVR 580
Query: 544 EAMEVLR 550
EAM VL+
Sbjct: 581 EAMAVLQ 587
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 21/191 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L E+ + L +F + + + V RD G S +G+VNF + +A +A+EA
Sbjct: 36 SLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 95
Query: 192 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
LN +GK + S R+ L+ K NL++KNL +ID +
Sbjct: 96 LNFTPL------IGKYIRVMFSNRDPSLR------------KSGRANLFVKNLEPNIDSK 137
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
L E+FS FG I SCKV D +G SKG GFV + T E A A+ +NG + ++ ++V +
Sbjct: 138 NLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGL 197
Query: 310 AQRKEERRARL 320
R+ +R +
Sbjct: 198 HMRRRDREVKF 208
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/548 (48%), Positives = 358/548 (65%), Gaps = 28/548 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LNFT +N K IR+M+S+RDP++RKSG N+FIKNL+ +ID+K+L++ FSSFG
Sbjct: 139 ATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGT 198
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ATD +G+SKG+GF+QFE++ SA++AI+ LNGML N +++FVG F+R+QERE
Sbjct: 199 ILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTG 258
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
F NV+VKNL + +D DL F +G ITSA+VMRD +G S+CFGFVNFE ++ A
Sbjct: 259 DANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECAR 318
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LNGK D YV +AQKKSER+ ELK +FE + +K Q +NLY+KNL D I
Sbjct: 319 NAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDI 378
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+DE L++LF FG + SCKVM D G SKG GFV+F+T E+A+ A+ +MNGKM+ KPLY
Sbjct: 379 NDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLY 438
Query: 307 VAVAQRKEERRARLQAQFSQMRPVA-MGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
VAVAQRKEER+A L A F+++R +A M P++ GP+ QF +G PA+ P
Sbjct: 439 VAVAQRKEERKAFLAAHFARVRALATMAPTL---------GPNIAPHQFNFGHGVPALFP 489
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
P G+ Q P +PN +P Q Q GQR G G P PH
Sbjct: 490 PPPPAGFGFQ--PNF------VPNMMMPYNMQRQPGQRSGPPHGGMPRHLHN------PH 535
Query: 426 QMPPR--GHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ-PMPITAL 481
QM + +R+ P RN P + P+ + VG+ P L
Sbjct: 536 QMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPMQPMQQAVKHVVPVGELQAPSNNL 595
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
T+LA+A+PEQQR +LG+ L+PLVEQL + A KVTGMLLE+D+TEVL+L+ESP+ L+ K
Sbjct: 596 QTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDK 655
Query: 542 VAEAMEVL 549
VAEAM+VL
Sbjct: 656 VAEAMKVL 663
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEA 191
++V +L+ S ++ L +F + + SA V RD G KS +G+VNF + +DA +A+E
Sbjct: 86 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 145
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 250
LN + + V S R+ L+ GL N++IKNL +ID++
Sbjct: 146 LNFTVVNGKPIRV----MFSNRDPTLRK-------------SGLANVFIKNLEPNIDNKS 188
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L E+FS FGTI S KV D +G SKG GF+ F + A A+ +NG + + ++V +
Sbjct: 189 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 248
Query: 311 QRKEER 316
R++ER
Sbjct: 249 IRRQER 254
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/548 (48%), Positives = 358/548 (65%), Gaps = 28/548 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LNFT +N K IR+M+S+RDP++RKSG N+FIKNL+ +ID+K+L++ FSSFG
Sbjct: 115 ATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGT 174
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ATD +G+SKG+GF+QFE++ SA++AI+ LNGML N +++FVG F+R+QERE
Sbjct: 175 ILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTG 234
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
F NV+VKNL + +D DL F +G ITSA+VMRD +G S+CFGFVNFE ++ A
Sbjct: 235 DANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECAR 294
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LNGK D YV +AQKKSER+ ELK +FE + +K Q +NLY+KNL D I
Sbjct: 295 NAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDI 354
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+DE L++LF FG + SCKVM D G SKG GFV+F+T E+A+ A+ +MNGKM+ KPLY
Sbjct: 355 NDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLY 414
Query: 307 VAVAQRKEERRARLQAQFSQMRPVA-MGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
VAVAQRKEER+A L A F+++R +A M P++ GP+ QF +G PA+ P
Sbjct: 415 VAVAQRKEERKAFLAAHFARVRALATMAPTL---------GPNIAPHQFNFGHGVPALFP 465
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
P G+ Q P +PN +P Q Q GQR G G P PH
Sbjct: 466 PPPPAGFGFQ--PNF------VPNMMMPYNMQRQPGQRSGPPHGGMPRHLHN------PH 511
Query: 426 QMPPR--GHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ-PMPITAL 481
QM + +R+ P RN P + P+ + VG+ P L
Sbjct: 512 QMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPMQPMQQAVKHVVPVGELQAPSNNL 571
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
T+LA+A+PEQQR +LG+ L+PLVEQL + A KVTGMLLE+D+TEVL+L+ESP+ L+ K
Sbjct: 572 QTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDK 631
Query: 542 VAEAMEVL 549
VAEAM+VL
Sbjct: 632 VAEAMKVL 639
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEA 191
++V +L+ S ++ L +F + + SA V RD G KS +G+VNF + +DA +A+E
Sbjct: 62 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 121
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 250
LN + + V S R+ L+ GL N++IKNL +ID++
Sbjct: 122 LNFTVVNGKPIRV----MFSNRDPTLRK-------------SGLANVFIKNLEPNIDNKS 164
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L E+FS FGTI S KV D +G SKG GF+ F + A A+ +NG + + ++V +
Sbjct: 165 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 224
Query: 311 QRKEER 316
R++ER
Sbjct: 225 IRRQER 230
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/548 (48%), Positives = 358/548 (65%), Gaps = 28/548 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LNFT +N K IR+M+S+RDP++RKSG N+FIKNL+ +ID+K+L++ FSSFG
Sbjct: 116 ATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGT 175
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ATD +G+SKG+GF+QFE++ SA++AI+ LNGML N +++FVG F+R+QERE
Sbjct: 176 ILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTG 235
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
F NV+VKNL + +D DL F +G ITSA+VMRD +G S+CFGFVNFE ++ A
Sbjct: 236 DANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECAR 295
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LNGK D YV +AQKKSER+ ELK +FE + +K Q +NLY+KNL D I
Sbjct: 296 NAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDI 355
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+DE L++LF FG + SCKVM D G SKG GFV+F+T E+A+ A+ +MNGKM+ KPLY
Sbjct: 356 NDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLY 415
Query: 307 VAVAQRKEERRARLQAQFSQMRPVA-MGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
VAVAQRKEER+A L A F+++R +A M P++ GP+ QF +G PA+ P
Sbjct: 416 VAVAQRKEERKAFLAAHFARVRALATMAPTL---------GPNIAPHQFNFGHGVPALFP 466
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
P G+ Q P +PN +P Q Q GQR G G P PH
Sbjct: 467 PPPPAGFGFQ--PNF------VPNMMMPYNMQRQPGQRSGPPHGGMPRHLHN------PH 512
Query: 426 QMPPR--GHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ-PMPITAL 481
QM + +R+ P RN P + P+ + VG+ P L
Sbjct: 513 QMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPMQPMQQAVKHVVPVGELQAPSNNL 572
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
T+LA+A+PEQQR +LG+ L+PLVEQL + A KVTGMLLE+D+TEVL+L+ESP+ L+ K
Sbjct: 573 QTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDK 632
Query: 542 VAEAMEVL 549
VAEAM+VL
Sbjct: 633 VAEAMKVL 640
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEA 191
++V +L+ S ++ L +F + + SA V RD G KS +G+VNF + +DA +A+E
Sbjct: 63 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAMEN 122
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 250
LN + + V S R+ L+ GL N++IKNL +ID++
Sbjct: 123 LNFTVVNGKPIRV----MFSNRDPTLRK-------------SGLANVFIKNLEPNIDNKS 165
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L E+FS FGTI S KV D +G SKG GF+ F + A A+ +NG + + ++V +
Sbjct: 166 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 225
Query: 311 QRKEER 316
R++ER
Sbjct: 226 IRRQER 231
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 269/572 (47%), Positives = 364/572 (63%), Gaps = 47/572 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E + ++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSI+DE+L+ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV
Sbjct: 303 LDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG M+PPG G G F+
Sbjct: 362 TKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QMFPPG--GAGNYFV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG------------QRPG 405
P I PQ +G Q P PN P G G + P
Sbjct: 411 ---PTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQTGNSGFATMQGPFRTTPRAPT 467
Query: 406 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 465
+ AG ++ T PI + + Y NM++ P M + P PV I
Sbjct: 468 AQ--AGTMRSTLSARPITAVGVSAQSRPSNYKYTSNMRNPPQAMAIPA--PTPVQQAVHI 523
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
++ P+TA + LA A P++Q+ +LGE L+PL++ + K+TGMLLE+D
Sbjct: 524 QGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDN 574
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 575 SELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 606
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 169/290 (58%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 186 --EKAKLFT-------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/570 (47%), Positives = 364/570 (63%), Gaps = 43/570 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV
Sbjct: 303 LDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 362 TKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG--QRPGGRRGA----- 410
P I PQ +G Q P PN P G G G R A
Sbjct: 411 ---PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPT 467
Query: 411 ---GPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
G ++ T PI + + Y NM++ P M + P PV I
Sbjct: 468 AQPGAMRSTLSARPITAVGVSAQSRPSNYKYTSNMRNPPQAMAIPT--PTPVQQAVHIQG 525
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
++ P+TA + LA A P++Q+ +LGE L+PL++ + K+TGMLLE+D +E
Sbjct: 526 QE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSE 576
Query: 528 VLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 577 LLHMLEHNESLKAKVEEAVAVLQAHQAKQA 606
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 169/290 (58%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 186 --EKAKLFT-------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 279/571 (48%), Positives = 363/571 (63%), Gaps = 50/571 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA++ LN+TP+N K+IRIM+SHRDPS RKSG GNIFIKNLD+SID+KALHDTF +F
Sbjct: 90 ADAVRAMEALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAF 149
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCKIA G+SKG+GFV FE E+A AI+K+NGM + K+VFV F+++ +R
Sbjct: 150 GPILSCKIAHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLA 208
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+TKF NVFVKNLD +E++K+ F +G IT+ V+M+D + KSK FGFVNF++ +
Sbjct: 209 ATGETKFTNVFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEA 268
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A AVE +N + R YVG+AQKK+EREQ L+ QFE+ E K+QG NLY+KNL D
Sbjct: 269 ARAAVETMNNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDD 328
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
SIDDE LK+ FS +G ITS KVMRD GISKG GFV F++PEEASRA E NG MI KP
Sbjct: 329 SIDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKP 388
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
+YVA+AQRKE R+A+LQ Q++Q M P YPP +Y APPA++
Sbjct: 389 IYVAMAQRKEIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPP---------VYYAAPPALL 439
Query: 365 P--PQ-AGFGYQQQLVPGM---------RPAGAPMPNF-FVPVVSQGQQGQR---PGGRR 408
P PQ G YQ + PG RP+ P+P + VP + Q+ R PGG+
Sbjct: 440 PQVPQRQGLMYQPVMRPGWRTGPLAPPGRPSLQPLPPYALVPNAQRQQRQVRNRPPGGQ- 498
Query: 409 GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 468
P+ Q Q P + P G+ GRN Q P +M V G PR
Sbjct: 499 ---PLAQIPQLQIPQPQAIQPGGYKEN---GRNQQQRPRQ----AMKYV----NNGRPRD 544
Query: 469 DASVGQP-------MPITA--LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
A+ G P MP+ + + ++ ASP+QQ+ LLGE L+PLV + D A K+TGM
Sbjct: 545 GAAAGGPVLMVPGNMPMGGNDVLSMMSAASPQQQKQLLGERLFPLVRTHQFDLAGKITGM 604
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
LLEMD +E+L LLE+PEAL +KV EA++VL+
Sbjct: 605 LLEMDNSELLVLLETPEALASKVDEAVQVLQ 635
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 18/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +LDE+ + L IF + G +TS V RD +S +G+VN+ + DA +A+EA
Sbjct: 39 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 98
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + + + G N++IKNL +SID++ L
Sbjct: 99 LNYTPINGKTIRIMWSHRDPSTRKSGVG----------------NIFIKNLDESIDNKAL 142
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F FG I SCK+ G SKG GFV F T E A+ A+ ++NG +V K ++VA
Sbjct: 143 HDTFIAFGPILSCKIAHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFV 201
Query: 312 RKEERRA 318
++ +R A
Sbjct: 202 KRSDRLA 208
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 292
G++LY+ +L +++ + +L +FS+ G +TS +V RD + S G G+V +S+ +A RA+
Sbjct: 37 GVSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAM 96
Query: 293 AEMNGKMIVSKPLYVAVAQRKEERR 317
+N I K + + + R R
Sbjct: 97 EALNYTPINGKTIRIMWSHRDPSTR 121
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/597 (43%), Positives = 367/597 (61%), Gaps = 58/597 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S RAL+ LN++ + N++ RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF++F
Sbjct: 96 SDGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAF 155
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GN+LSCK+ATD G+SKG+GFV +E E+A+ AI +NGML+NDK+V+VG+ + ++ER++
Sbjct: 156 GNVLSCKVATDEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQS 215
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K +F N+++KNLD S T ++ +++F +YG +TSA+V D +G SK FGFVN+E+
Sbjct: 216 KLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHH 275
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A AV+AL+ ++ +V +AQKK+ERE+EL+ +EQA E + K+QG+NLYIKNL
Sbjct: 276 EEAQSAVDALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNL 335
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D +DDEKL+ F FGTITSCKVMRD SKG GFV FS+P+EA++A+AEMN KMI S
Sbjct: 336 EDDVDDEKLRAEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGS 395
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP--------MYPPGPSGL---G 351
KPLYV++AQR+E RR +L++Q +Q + M + +P YPPGP G
Sbjct: 396 KPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGIPGGYINGPMYYPPGPGSFPPQG 455
Query: 352 QQFL-YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 410
+ + YGQ P ++PP+ + VPG G P+P + P S G P G
Sbjct: 456 RNMMGYGQ--PGMLPPRPRYPAGNGQVPG----GMPIPPYGQPPQSYGGMPGYPRGGAPR 509
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV------------- 457
PV + P P+ PR +A P N GS+ P
Sbjct: 510 PPVARGPGSSPTNPNAPIPRANA---PPSVNGAAARGGAPQGSVPPNRPPPAGAPAPGNR 566
Query: 458 --------PVDMGAGIPRRDASVGQPMPITALST----------ALANASPEQQRTLLGE 499
P AG P VGQ P A +T ALANASP +Q+ +LGE
Sbjct: 567 PPQGYKLNPQTRNAGAP----PVGQTSPAQAPATQSEVPTLTAGALANASPMEQKQMLGE 622
Query: 500 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 556
+Y + + + A K+TGMLLEMD E+LHLLESP+++ KV EA+ VL + +
Sbjct: 623 VIYMKIAPAQPELAGKITGMLLEMDNAELLHLLESPDSMAGKVNEALAVLHDFTKDE 679
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 20/198 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V LD + T+ L +IF G + S V RD +S + +VN+ N D +A+E L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N +R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 106 NYSLIKNRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKALH 149
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 150 DTFAAFGNVLSCKVATDEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHIS 209
Query: 313 KEERRARL---QAQFSQM 327
++ER+++L +AQF+ +
Sbjct: 210 RKERQSKLDEMKAQFTNL 227
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/586 (46%), Positives = 370/586 (63%), Gaps = 46/586 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQ 352
KPLYVA+AQRKEER+A L Q+ Q +R V P + P P P G P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 353 QFLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPG 405
Y + A + P + Q Q +PG +RPA AP P F + Q +
Sbjct: 420 AAYYPTSQLAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMS 478
Query: 406 GRRGAGPVQQTQQPLPIMPHQMPP----RGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVD 460
+R A QT P P G Y+Y G RN Q +M V
Sbjct: 479 TQRVANTSTQTMGPRPAAAAAAATPAVRTGPQYKYAAGVRNPQQHLNTQPQVAMQQPAVH 538
Query: 461 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
+ GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 539 VQ----------GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 585
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
LE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ NNPA
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPA 631
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/590 (44%), Positives = 377/590 (63%), Gaps = 53/590 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD +NF L + +RIM+S RDPS+RKSG GN+FIKNLD+SID+KA++DTFS+
Sbjct: 53 MADAERALDTMNFDILKGRPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSA 112
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A D +GQSKG+GFV FE ++SA +I+K+NGML+N K+VFVG F+ +++RE
Sbjct: 113 FGNILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDRE 172
Query: 124 T-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ K K + NV++KN+DE+ D++L ++F +YG+ITS VM DG S+ FGFV FE+
Sbjct: 173 KELGQKAKLYTNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFED 232
Query: 182 ADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
++A KAV L+GK+ + + +YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+K
Sbjct: 233 PEEAEKAVTELHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVK 292
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDE+L++ FS FGTITS KVM D G SKG GFV FS+PEEA++A+ +MNG+++
Sbjct: 293 NLDDTIDDERLRKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTDMNGRIV 351
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG-------PSG 349
+KPLYVA+AQRKE+R+A L +Q+ Q MR ++G P+Y PG P+
Sbjct: 352 GTKPLYVALAQRKEDRKAHLDSQYLQRNTNMRMQSIG-------PIYQPGASSGYFVPTI 404
Query: 350 LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGM-RPAGAPMPNFFVPVVSQGQQGQRPGGRR 408
Q YG I PQ + Q Q+ G + A A PN + G + P G++
Sbjct: 405 PQPQRFYGPTQMTQIRPQPRWASQPQVRAGTPQAAAAGYPNMATQYRNIGARAPVPAGQQ 464
Query: 409 GA----GPVQQTQQPLPIMPHQMP------------PRGHAYRYPLGRNMQDFPFD-MGA 451
A V + +P+ QMP RG Y NM++ P G
Sbjct: 465 AALARNAMVDRNARPISTAQQQMPGAVAAGGVRVPGARGTGSGYKYTANMRNPPGQAQGM 524
Query: 452 GSML----PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
G P PV + ++ P+TA T LA A PE Q+ +LGE L+PL+++
Sbjct: 525 GQAQPGQPPAPVQAAVHVHGQE-------PLTA--TMLATAKPEDQKQMLGERLFPLIQR 575
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ + K+TGMLLE+D +++LH+LE E+LK KV E + VL++ QQ
Sbjct: 576 MYPELTGKITGMLLEIDNSDLLHMLEHHESLKNKVEEVVAVLQAHQAQQT 625
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FS+ G +LS ++ D + +S G+ +V F+N A+ A+D
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDT 62
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ + + + +R+ K+ NVF+KNLD S ++ + F +G I S
Sbjct: 63 MNFDILKGRPMRI----MWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILS 118
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V +D G+SK +GFV+FE A +++E +NG + ++ +VG+ + +RE+EL GQ
Sbjct: 119 CKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKEL-GQ 177
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN+ ++++D++L E+F ++G+ITS KVM G S+G GFV
Sbjct: 178 KAKLY---------TNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFV 228
Query: 281 AFSTPEEASRALAEMNGKMI-VSKPLYVAVAQRKEERRARLQAQFSQMR 328
AF PEEA +A+ E++GK K YV AQ+K ER+ L+ +F Q +
Sbjct: 229 AFEDPEEAEKAVTELHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYK 277
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 269/581 (46%), Positives = 365/581 (62%), Gaps = 56/581 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV
Sbjct: 303 LDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 362 TKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG---------------- 401
P I PQ +G Q P PN P G G
Sbjct: 411 ---PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPT 467
Query: 402 QRPGGRR-----GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP 456
+PG R G +Q P + R Y+Y NM++ P M + P
Sbjct: 468 AQPGAMRSQQTVGGANMQSRSMAGPAVGVSAQSRPSNYKYT--SNMRNPPQAMAIPT--P 523
Query: 457 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
PV I ++ P+TA + LA A P++Q+ +LGE L+PL++ + K+
Sbjct: 524 TPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKI 574
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 575 TGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 615
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL-- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 185 ------GEKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 273/590 (46%), Positives = 366/590 (62%), Gaps = 65/590 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E + ++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSI+DE+L+ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV
Sbjct: 303 LDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG M+PPG G G F+
Sbjct: 362 TKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QMFPPG--GAGNYFV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG------------QRPG 405
P I PQ +G Q P PN P G G + P
Sbjct: 411 ---PTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQTGNSGFATMQGPFRTTPRAPT 467
Query: 406 GRRGAGPVQQTQQPLPIMPHQ------MPPRGHA------------YRYPLGRNMQDFPF 447
+ AG ++ T PI Q M R A Y NM++ P
Sbjct: 468 AQ--AGTMRSTLSARPITGQQAVGGANMQSRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQ 525
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
M + P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++
Sbjct: 526 AMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQC 574
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 575 MYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 624
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKEL-- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 185 ------GEKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 265/587 (45%), Positives = 366/587 (62%), Gaps = 48/587 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQ 352
KPLYVA+AQRKEER+A L Q+ Q +R V P + P P P G P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 353 QFLYGQAPPAIIPPQAGFGYQQ------QLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGG 406
Y + + P + Q Q +PG AP P F + Q +
Sbjct: 420 AAYYPTSQITQLRPSPRWAAQGARPHPFQNMPGAIRPTAPRPPFSTMRPASSQVTRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVSQYKYAAGVRN----PQQHLNTQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
LLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ NNPA
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPA 631
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 273/567 (48%), Positives = 353/567 (62%), Gaps = 70/567 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA++ LN+TP+N K+IRIM+SHRDPS RKSG GNIFIKNLD+SID+KALHDTF +F
Sbjct: 89 ADAVRAMEALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAF 148
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCKIA G+SKG+GFV FE E+A AI+K+NGM + K+VFV F+++ +R
Sbjct: 149 GPILSCKIAHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLA 207
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+TKF NVFVKNLD +E++ + F +G IT+ V+M+D + KSK FGFVNF++ +
Sbjct: 208 ATGETKFTNVFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEA 267
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A AVE +N + R YVG+AQKK+EREQ L+ QFE+ E K+QG NLY+KNL D
Sbjct: 268 ARAAVETMNNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDD 327
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
SIDDE LK+ FS +G ITS KVMRD GISKG GFV F++PEEASRA E NG MI KP
Sbjct: 328 SIDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKP 387
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
+YVA+AQRKE R+A+LQ Q++Q M P YPP +Y APPA++
Sbjct: 388 IYVAMAQRKEIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPP---------VYYAAPPALL 438
Query: 365 P--PQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRG--AGPVQQTQQP 419
P PQ G YQ PV+ RPG R G A P + + QP
Sbjct: 439 PQVPQRQGLMYQ-------------------PVM-------RPGWRTGPLAPPGRPSLQP 472
Query: 420 LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA---GSMLPVPVD----MGAGIPRRDASV 472
LP Y L RN + P + + G M P + G PR A+
Sbjct: 473 LP-------------PYALVRNKKGVPLSISSYIVGVMQQRPRQAMKYVNNGRPRDGAAA 519
Query: 473 GQP-------MPITA--LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
G P MP+ + + ++ ASP+QQ+ LLGE L+PLV + D A K+TGMLLEM
Sbjct: 520 GGPVLMVPGNMPMGGNDVLSMMSAASPQQQKQLLGERLFPLVRTHQFDLAGKITGMLLEM 579
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLR 550
D +E+L LLE+PEAL +KV EA++VL+
Sbjct: 580 DNSELLVLLETPEALASKVDEAVQVLQ 606
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 18/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +LDE+ + L IF + G +TS V RD +S +G+VN+ + DA +A+EA
Sbjct: 38 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 97
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + + + G N++IKNL +SID++ L
Sbjct: 98 LNYTPINGKTIRIMWSHRDPSTRKSGVG----------------NIFIKNLDESIDNKAL 141
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F FG I SCK+ G SKG GFV F T E A+ A+ ++NG +V K ++VA
Sbjct: 142 HDTFIAFGPILSCKIAHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFV 200
Query: 312 RKEERRA 318
++ +R A
Sbjct: 201 KRSDRLA 207
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 292
G++LY+ +L +++ + +L +FS+ G +TS +V RD + S G G+V +S+ +A RA+
Sbjct: 36 GVSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAM 95
Query: 293 AEMNGKMIVSKPLYVAVAQRKEERR 317
+N I K + + + R R
Sbjct: 96 EALNYTPINGKTIRIMWSHRDPSTR 120
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 269/581 (46%), Positives = 364/581 (62%), Gaps = 56/581 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK +F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV
Sbjct: 303 LDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 362 TKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG---------------- 401
P I PQ +G Q P PN P G G
Sbjct: 411 ---PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPT 467
Query: 402 QRPGGRR-----GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP 456
+PG R G +Q P + R Y+Y NM++ P M + P
Sbjct: 468 AQPGAMRSQQTVGGANMQNRSMAGPAVGVTAQSRPSNYKYT--SNMRNPPQAMAIPA--P 523
Query: 457 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
PV I ++ P+TA + LA A P++Q+ +LGE L+PL++ + K+
Sbjct: 524 TPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKI 574
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 575 TGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 615
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL-- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + D+KLK++F ++GTITS KVM G S+G GF
Sbjct: 185 ------GEKAKLF--TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/593 (44%), Positives = 377/593 (63%), Gaps = 59/593 (9%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A ALD +NF LN +RIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+
Sbjct: 53 MADAECALDTMNFEILNGCPMRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 112
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A D +GQSKG+GFV F+ ++SA +I+K+NGML+N K+VFVG F+ +++RE
Sbjct: 113 FGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDRE 172
Query: 124 T-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ K K F NV++KN+DE+ D++L ++F +YG+ITS VM DG S+ FGFV FE+
Sbjct: 173 KELGQKAKLFTNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFED 232
Query: 182 ADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+A KAV L+GK+ + + +YVG+AQKK+ER+ ELK +FEQ E ++++QG+NLY+K
Sbjct: 233 PKEAEKAVSELHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVK 292
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDE L+ FS FGTITS KVM D G SKG GFV FS+PEEA++A+ EMN +++
Sbjct: 293 NLDDTIDDEHLRREFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTEMNNRIV 351
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSG------- 349
+KPLYVA+AQRKEER+A L AQ+ Q MR ++G P+Y PG S
Sbjct: 352 GTKPLYVALAQRKEERKAHLNAQYLQSNTNMRMQSIG-------PIYQPGASSGYFVPTI 404
Query: 350 -LGQQFLYGQAPPAIIPPQAGFGYQQQL-VPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
GQ+F YG A I PQ + Q Q+ + + A A PN + G + P G+
Sbjct: 405 PQGQRF-YGPAQMTQIRPQPRWASQPQVRIATPQNAAAGHPNMATQYRNIGARAPVPAGQ 463
Query: 408 R----GAGPVQQTQQPLPIMPHQMP--------------PRGHAYRYPLGRNMQDFPFD- 448
+ G V + +P+ Q+P G Y+Y NM++ P +
Sbjct: 464 QAAFTGNSMVNRNSRPISTAQQQIPGAVSAGSVRVPSARSSGSGYKYTA--NMRNPPGEA 521
Query: 449 MGAGSML----PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 504
G G P PV + ++ P+TA + LA+A PE Q+ +LGE L+PL
Sbjct: 522 QGMGQAQPRQPPAPVQAALHVHGQE-------PLTA--SMLASAKPEDQKQMLGERLFPL 572
Query: 505 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
++++ K+TGMLLE+D +EVLH+LE E+LK KV EA+ V+++ QQ
Sbjct: 573 IQRIYPKFTGKITGMLLEIDNSEVLHMLEHQESLKIKVQEAVAVIQAHQTQQT 625
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 170/290 (58%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L + FS+ G ++S ++ D + +S G+ +V F+N A+ A+D
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N ++N + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 62 TMNFEILNGCPMRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G+SK +GFV+F+ A +++E +NG + ++ +VG+ + +RE+EL G
Sbjct: 118 SCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKEL-G 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
Q + N+YIKN+ ++++D++L E+F ++G+ITSCKVM G S+G GF
Sbjct: 177 QKAKLF---------TNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGF 227
Query: 280 VAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+EA +A++E++GK K YV AQ+K ER+ L+ +F Q +
Sbjct: 228 VAFEDPKEAEKAVSELHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYK 277
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 265/590 (44%), Positives = 365/590 (61%), Gaps = 55/590 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P P P PSG F+ A
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY---FM------A 411
Query: 363 IIPP---QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ----RPGGRRGAGP--- 412
IP +A + + QL RP+ P + +QG + PG R A P
Sbjct: 412 AIPQTQNRAAYYHTNQLAQLARPS----PRW----TAQGARPHPFQNMPGAIRPAAPRPP 463
Query: 413 -------------VQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLP-- 456
V TQ+ M PR A ++ P + AG P
Sbjct: 464 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQ 523
Query: 457 -VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
+ + + V P+TA + LA+A P++Q+ +LGE L+PL++ + A K
Sbjct: 524 HLNTQPQVAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGK 581
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNP 560
+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ NNP
Sbjct: 582 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 631
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ++ ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMK 284
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/558 (46%), Positives = 358/558 (64%), Gaps = 35/558 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYP---------LGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
+ H + P G P P+ + P P P+ V
Sbjct: 462 LRH-LAPTGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQ 520
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LE
Sbjct: 521 GQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 578
Query: 534 SPEALKAKVAEAMEVLRS 551
SPE+L++KV EA+ VL++
Sbjct: 579 SPESLRSKVDEAVAVLQA 596
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/593 (44%), Positives = 360/593 (60%), Gaps = 61/593 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + R+ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D +DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGL---------GQQ 353
KPLYVA+AQRKEER+A L Q+ Q P P P PSG +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA 420
Query: 354 FLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGG 406
Y A + P + Q Q + MRP+ AP P F +
Sbjct: 421 AYYSANQLAQLRPSPRWATQGVRPQHFQNIQNAMRPS-APRPQTFNAI------------ 467
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-------RNMQDFPFDMGA-------G 452
A TQ P + +MP + + R R M + + G
Sbjct: 468 --RASTATNTQVPRMMASQRMPTQALSQRPAAASATTAPVRAMPQYKYAPGVRNPQQHMA 525
Query: 453 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 512
S VP +P+ V P+TA + LA A P++Q+ +LGE L+PL++ +
Sbjct: 526 SQQQVP------MPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSL 577
Query: 513 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS----VAQQQANNPA 561
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A Q++ PA
Sbjct: 578 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSTTPA 630
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + + + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + + N+YIKN G+ +DDEKLKELF +G S +VM D
Sbjct: 177 KEREAELGARAREFT----------NVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G SKG GFV+F E+A +A+ +MNGK + + +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 TGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMK 284
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/590 (45%), Positives = 364/590 (61%), Gaps = 55/590 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P P P PSG F+ A
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY---FM------A 411
Query: 363 IIPP---QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ----RPGGRRGAGP--- 412
IP +A + QL RP+ P + +QG + PG R A P
Sbjct: 412 AIPQTQNRAAYYPTNQLAQLARPS----PRW----TAQGARPHPFQNMPGAIRPAAPRPP 463
Query: 413 -------------VQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLP-- 456
V TQ+ M PR A ++ P + AG P
Sbjct: 464 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQ 523
Query: 457 -VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
+ + + V P+TA + LA+A P++Q+ +LGE L+PL++ + A K
Sbjct: 524 HLNTQPQVAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGK 581
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNP 560
+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ NNP
Sbjct: 582 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 631
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 265/586 (45%), Positives = 367/586 (62%), Gaps = 50/586 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQ 352
KPLYVA+AQRKEER+A L Q+ Q +R V P + P P P G P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 353 QFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG 405
Y + A + P + Q Q + +RPA AP P F + Q +
Sbjct: 420 AAYYPASQIAQLRPSPRWTAQGARPHPFQNMPSAIRPA-APRPPFGTMRPASTQVPRVMS 478
Query: 406 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 465
+R A QT P P A P R + + + G + P
Sbjct: 479 TQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQ 527
Query: 466 PRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
P+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 528 PQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 583
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANN 559
MLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ NN
Sbjct: 584 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNN 629
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 269/590 (45%), Positives = 365/590 (61%), Gaps = 65/590 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV
Sbjct: 303 LDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 362 TKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG---------------- 401
P I PQ +G Q P PN P G G
Sbjct: 411 ---PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPT 467
Query: 402 QRPGGRR--------------GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF 447
+PG R G +Q P + R Y+Y NM++ P
Sbjct: 468 AQPGAMRSTLSARPITGQQTVGGANMQSRSMAGPAVGVSAQSRPSNYKYT--SNMRNPPQ 525
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
M + P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++
Sbjct: 526 AMAIPT--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQC 574
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 575 MYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 624
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL-- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 185 ------GEKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/565 (46%), Positives = 358/565 (63%), Gaps = 49/565 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E D +LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL+ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P S + QF
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---------ASAILNQF-------- 401
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ------GQQGQRPGGRRGAGPVQQ 415
P AG GY VP + P P ++ P ++Q QQG RP G +G +
Sbjct: 402 --QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALR 454
Query: 416 TQQPLPIMPHQMPPRGHAYRYP---------LGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
P P + H + P G P P+ + P P P
Sbjct: 455 QSGPRPALRH-LAPTGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAP 513
Query: 467 RRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +
Sbjct: 514 QPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS 571
Query: 527 EVLHLLESPEALKAKVAEAMEVLRS 551
E+LH+LESPE+L++KV EA+ VL++
Sbjct: 572 ELLHMLESPESLRSKVDEAVAVLQA 596
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 72 MNFDVMKGKPIRIMWSQR 89
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 269/590 (45%), Positives = 364/590 (61%), Gaps = 65/590 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK +F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV
Sbjct: 303 LDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 362 TKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG---------------- 401
P I PQ +G Q P PN P G G
Sbjct: 411 ---PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPT 467
Query: 402 QRPGGRR--------------GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF 447
+PG R G +Q P + R Y+Y NM++ P
Sbjct: 468 AQPGAMRSTLSARPITGQQTVGGANMQNRSMAGPAVGVTAQSRPSNYKYT--SNMRNPPQ 525
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
M + P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++
Sbjct: 526 AMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQC 574
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 575 MYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 624
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL-- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + D+KLK++F ++GTITS KVM G S+G GF
Sbjct: 185 ------GEKAKLF--TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/565 (46%), Positives = 358/565 (63%), Gaps = 49/565 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 80 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 139
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 140 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 198
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E D +LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 199 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 258
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 259 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 318
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL+ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 319 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 377
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P S + QF
Sbjct: 378 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---------ASAILNQF-------- 418
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ------GQQGQRPGGRRGAGPVQQ 415
P AG GY VP + P P ++ P ++Q QQG RP G +G +
Sbjct: 419 --QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALR 471
Query: 416 TQQPLPIMPHQMPPRGHAYRYP---------LGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
P P + H + P G P P+ + P P P
Sbjct: 472 QSGPRPALRH-LAPTGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAP 530
Query: 467 RRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +
Sbjct: 531 QPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS 588
Query: 527 EVLHLLESPEALKAKVAEAMEVLRS 551
E+LH+LESPE+L++KV EA+ VL++
Sbjct: 589 ELLHMLESPESLRSKVDEAVAVLQA 613
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 89 MNFDVMKGKPIRIMWSQR 106
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/579 (45%), Positives = 357/579 (61%), Gaps = 37/579 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGL-------------- 350
LYVA+AQRKEER+A L Q+ Q P P P PSG
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 358
Query: 351 --GQQFLYGQAPPAIIPPQAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
Q P Q + Q +PG +RPA AP P F + Q + +
Sbjct: 359 YPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQ 417
Query: 408 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS-MLPVPVDMGAGIP 466
R A QT P P P R + + + G + + +
Sbjct: 418 RVANTSTQTMGPRPAA-------AATAATPSVRTVPQYKYAAGVRNPQQHLNTQPQVAMQ 470
Query: 467 RRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ V P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +
Sbjct: 471 QPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNS 528
Query: 527 EVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNP 560
E+LH+LESPE+L++KV EA+ VL + AQ+ NNP
Sbjct: 529 ELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 567
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 271/590 (45%), Positives = 367/590 (62%), Gaps = 65/590 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV
Sbjct: 303 LDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIV 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 362 TKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG------------QRPG 405
P I PQ +G Q P PN P G G + P
Sbjct: 411 ---PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPT 467
Query: 406 GRRGAGPVQQTQQPLPIMPHQ------MPPRGHA------------YRYPLGRNMQDFPF 447
+ AG ++ T PI Q M R A Y NM++ P
Sbjct: 468 AQ--AGTMRNTLSARPITGQQAVGGANMQNRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQ 525
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
M + P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++
Sbjct: 526 AMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQC 574
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 575 MYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 624
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL-- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 185 ------GEKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/579 (45%), Positives = 363/579 (62%), Gaps = 43/579 (7%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L +A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+
Sbjct: 25 LLAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 84
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 85 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 143
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 144 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 203
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KN
Sbjct: 204 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 263
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 264 LDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 322
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAP 360
+KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 323 TKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 382
Query: 361 PAIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPG 405
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 383 AAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMS 441
Query: 406 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 465
+R A QT P P A P R + + + G + P
Sbjct: 442 TQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQ 490
Query: 466 PRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
P+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 491 PQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 546
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
MLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 547 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 585
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 363/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/560 (46%), Positives = 361/560 (64%), Gaps = 27/560 (4%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLD+SID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV FE +E+A +I+K+NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E T+E L+ +F +YG ITS +M DGKSK FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESP 242
Query: 183 DDAAKAVEALNGKK-FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AVEALNGK+ D + YVG+AQKK+ER+QELK +FE E ++++QG+NLY+KN
Sbjct: 243 EAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ FS FGTITS KVM + SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 303 LDDTIDDERLRKEFSPFGTITSAKVMME-DNRSKGFGFVCFSSPEEATKAVTEMNGRIVG 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
SKPLYVA+AQRKE+R+A L +Q+ Q +R MG + P P+ Q YG
Sbjct: 362 SKPLYVALAQRKEDRKAHLTSQYMQRMANIRMHQMGQFIQPGTSSGYFVPTIPAPQRFYG 421
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 417
A A I + Q + PG + G+ P +P + RP + A
Sbjct: 422 AAQMAQIRTNPRWPAQTPVRPGAQ--GSANPYGTIPTTYRA--APRPPN-QSAALRSNIN 476
Query: 418 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
P PI Q PP PL P +G + PV ++ + P
Sbjct: 477 VPRPITGQQ-PPNIQG--RPLASQAVVAPAGLGISNAAPV---------QQAVHIQGQEP 524
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 537
+TA T LA A P++Q+ +LGE L+PL++++ D A K+TGMLLE+D +E+LH+LE E+
Sbjct: 525 LTA--TMLAAAPPQEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHNES 582
Query: 538 LKAKVAEAMEVLRSVAQQQA 557
LKAKV EA+ VL++ +QA
Sbjct: 583 LKAKVEEAVAVLQAHQAKQA 602
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI + + + +R+ K+ NVF+KNLD S ++ + F +G I
Sbjct: 71 TMNFDLIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D +G SK +GFV+FE + A K++E +NG + ++ YVG+ + ERE+EL
Sbjct: 127 SCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN G+ + +E+L+ +F ++G ITS K+M G SKG GF
Sbjct: 186 --EKAKLFT-------NVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF +PE A A+ +NGK I+ KPLYV AQ+K ER+ L+ +F ++
Sbjct: 237 VAFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALK 286
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 363/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQ 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/577 (45%), Positives = 363/577 (62%), Gaps = 57/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 265/587 (45%), Positives = 362/587 (61%), Gaps = 55/587 (9%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNIL
Sbjct: 82 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 141
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A
Sbjct: 142 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 200
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 201 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 260
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D I
Sbjct: 261 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 320
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLY
Sbjct: 321 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 379
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKEER+A L Q+ Q P P P PSG F+ A IP
Sbjct: 380 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY---FM------AAIPQ 430
Query: 367 ---QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ----RPGGRRGAGP------- 412
+A + QL RP+ P + +QG + PG R A P
Sbjct: 431 TQNRAAYYPTNQLAQLARPS----PRW----TAQGARPHPFQNMPGAIRPAAPRPPFSTM 482
Query: 413 ---------VQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLP---VPV 459
V TQ+ M PR A ++ P + AG P +
Sbjct: 483 RPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNT 542
Query: 460 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ + V P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 543 QPQVAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGM 600
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
LLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ NNP
Sbjct: 601 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPT 647
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/581 (45%), Positives = 363/581 (62%), Gaps = 43/581 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 5 AAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 64
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 65 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 123
Query: 126 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 124 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 183
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 184 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 243
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 244 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 302
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPA 362
PLYVA+AQRKEER+A L Q+ Q P P P PSG + Q A
Sbjct: 303 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 362
Query: 363 IIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
PP Q + Q +PG +RPA AP P F + Q + +
Sbjct: 363 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQ 421
Query: 408 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
R A QT P P A P R + + + G + P P+
Sbjct: 422 RVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ 470
Query: 468 RDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 471 --VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 526
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
LE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A
Sbjct: 527 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 567
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 363/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPNLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/575 (46%), Positives = 356/575 (61%), Gaps = 54/575 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 50 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 109
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 110 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 168
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++FG+YG S VM D GKSK FGFV+FE
Sbjct: 169 ELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKH 228
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 229 EEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 288
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 289 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 347
Query: 303 KPLYVAVAQRKEERRARLQAQF----------------SQMRPVAMG---PSVP---PRM 340
KPLYVA+AQRKEER+A L Q+ +Q +P A G P+VP R
Sbjct: 348 KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANAILNQFQPAAGGYFMPAVPQAQSRP 407
Query: 341 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 400
P Y P Q P Q G Q +P MR +G P PN + Q
Sbjct: 408 PYYAPN--------QMTQIRPNPRWQQGGRPQGFQGMPNMRQSG-PRPNLRHLAPAGNAQ 458
Query: 401 GQR--PGG--RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP 456
R PG R G P P P Q+P Y+Y + P
Sbjct: 459 ASRGLPGAPQRVGIPPTGPNLAPRPPAAAQVPRAVPPYKY-------------ASSVRSP 505
Query: 457 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + A K+
Sbjct: 506 HPAVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHLSLAGKI 563
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 564 TGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 598
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/558 (46%), Positives = 356/558 (63%), Gaps = 35/558 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRG---------HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
+ H + P G P+ + P P P+ V
Sbjct: 462 LRH-LAPTGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQ 520
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LE
Sbjct: 521 GQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 578
Query: 534 SPEALKAKVAEAMEVLRS 551
SPE+L++KV EA+ VL++
Sbjct: 579 SPESLRSKVDEAVAVLQA 596
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/580 (45%), Positives = 363/580 (62%), Gaps = 43/580 (7%)
Query: 3 MLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFS 62
+ +A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS
Sbjct: 107 VFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 166
Query: 63 SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ER
Sbjct: 167 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 225
Query: 123 ETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
E A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 226 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFE 285
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+K
Sbjct: 286 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 345
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 346 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 404
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQA 359
+KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 405 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 464
Query: 360 PPAIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRP 404
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 465 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVM 523
Query: 405 GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG 464
+R A QT P P A P R + + + G + P
Sbjct: 524 STQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNA 572
Query: 465 IPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
P+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 573 QPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 628
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 629 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 668
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 214/342 (62%), Gaps = 39/342 (11%)
Query: 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
+NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK------------------------ 109
D +G SKG+GFV FE +E+A+ AI+K+NGML+N
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMN 119
Query: 110 -QVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
V G +R +R+ K+ N+F+KNLD+S ++ L F +G I S V+ D
Sbjct: 120 FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 179
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
+G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL + ++
Sbjct: 180 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT- 237
Query: 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E
Sbjct: 238 ---------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 288
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 289 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 330
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 362/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/577 (45%), Positives = 362/577 (62%), Gaps = 57/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 362/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 363/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/580 (45%), Positives = 359/580 (61%), Gaps = 48/580 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP- 361
KPLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PP
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPA 414
Query: 362 ----AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQ 402
A PP Q + Q +PG +RP P F + Q +
Sbjct: 415 QNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPR 474
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMPPRG----HAYRYPLG-RNMQDFPFDMGAGSMLPV 457
+R A QT P P Y+Y G RN Q +M
Sbjct: 475 VVSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQP 534
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
V + GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 535 AVHVQ----------GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 581
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 582 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 621
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G SKG GFV+F E+A +A+ +MNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMK 284
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/580 (45%), Positives = 362/580 (62%), Gaps = 43/580 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGN
Sbjct: 101 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 160
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 161 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 219
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 220 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 279
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D
Sbjct: 280 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 339
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 340 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 398
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAI 363
LYVA+AQRKEER+A L Q+ Q P P P PSG + Q A
Sbjct: 399 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 458
Query: 364 IPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRR 408
PP Q + Q +PG +RPA AP P F + Q + +R
Sbjct: 459 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQR 517
Query: 409 GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 468
A QT P P A P R + + + G + P P+
Sbjct: 518 VANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ- 565
Query: 469 DASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLL
Sbjct: 566 -VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 622
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
E+D +E+LH+LESPE+L++KV EA+ VL++ ++A A
Sbjct: 623 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 662
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/573 (46%), Positives = 362/573 (63%), Gaps = 49/573 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQIRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 461
Query: 423 MPHQMP------PRG---HAYRYPLGRNMQDF---------------PFDMGAGSMLPVP 458
+ H P RG A R + +Q+ P+ + P P
Sbjct: 462 LRHLAPTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHP 521
Query: 459 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TG
Sbjct: 522 AIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITG 579
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
MLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 580 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/576 (45%), Positives = 361/576 (62%), Gaps = 43/576 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAI 363
LYVA+AQRKEER+A L Q+ Q P P P PSG + Q A
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 358
Query: 364 IPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRR 408
PP Q + Q +PG +RPA AP P F + Q + +R
Sbjct: 359 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQR 417
Query: 409 GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 468
A QT P P A P R + + + G + P P+
Sbjct: 418 VANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ- 465
Query: 469 DASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLL
Sbjct: 466 -VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 522
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
E+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 523 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 558
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 362/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/573 (46%), Positives = 361/573 (63%), Gaps = 49/573 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMP------PRG---HAYRYPLGRNMQDF---------------PFDMGAGSMLPVP 458
+ H P RG A R + +Q+ P+ + P P
Sbjct: 462 LRHLAPTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHP 521
Query: 459 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TG
Sbjct: 522 AIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITG 579
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
MLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 580 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 362/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/580 (45%), Positives = 367/580 (63%), Gaps = 45/580 (7%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+
Sbjct: 229 LPHAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 288
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 289 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 347
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 348 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 407
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KN
Sbjct: 408 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 467
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 468 LDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 526
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLG 351
+KPLYVA+AQRKEER+A L Q+ Q +R V P + P P P G P
Sbjct: 527 TKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQN 585
Query: 352 QQFLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRP 404
+ Y + A + P + Q Q +PG +RPA AP P F + Q +
Sbjct: 586 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVM 644
Query: 405 GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG 464
+R A QT P P A P R + + + G + P
Sbjct: 645 STQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNA 693
Query: 465 IPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
P+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 694 QPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKIT 749
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 750 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 789
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/577 (45%), Positives = 361/577 (62%), Gaps = 57/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTAQRVGVPTAVQSLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 518 SPHPAMQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/577 (45%), Positives = 361/577 (62%), Gaps = 57/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/577 (45%), Positives = 361/577 (62%), Gaps = 57/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTAQRVGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/596 (44%), Positives = 358/596 (60%), Gaps = 85/596 (14%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD LNF P+N K RIM+S RDPS+R+SG GNIFIKNL+K ID+KA++DTFS+F
Sbjct: 71 NDAERALDTLNFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAF 130
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-E 123
GNILSCKIA D +G SKG+ FV FE +E+A AI+K+NGML++ K+VFVGHF+ ++ER E
Sbjct: 131 GNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERME 190
Query: 124 TVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K+ N++VKN + +D++ + +F + G I S VVMRD GKS+ FGFV++E
Sbjct: 191 KIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETH 250
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A KAVE LN K+FD R YV +AQKKSER L+ Q+EQ +E + +FQG+NLY+KNL
Sbjct: 251 EAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNL 310
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD KL++ F+ FGTITS KVM D GIS+G GFV FS+PEEA++A+ EMNG++I+S
Sbjct: 311 DDVIDDAKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIIS 370
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLY-GQAPP 361
KPLYVA+AQRKE+R+A+L AQ+ Q R+P PG G+ Q F G P
Sbjct: 371 KPLYVALAQRKEDRKAQLAAQYVQRMSTL-------RIPQ--PGQPGVNQMFQQGGYYMP 421
Query: 362 AI---------------IPPQAGFGYQQQLVP--------------------GMRPAGAP 386
+ +P + + QQ + GMR AG P
Sbjct: 422 GMHQGQQQQQRFYATQQMPARPRWQNQQMMRNSGGGSSYGGIGGGSQMGRGRGMRFAGVP 481
Query: 387 MPNFFVPVVSQGQQGQRPGGRRGAGPVQ-QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 445
SQGQQ P R A + QP + PP H+ N+++
Sbjct: 482 R--------SQGQQNVNPSQRSAAANAALVSNQP------RHPPYKHS-------NVRNI 520
Query: 446 PFDMGAGSMLPVPVDMGA-GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 504
P P + P +DA L+T L+ QQ+ +LGE LYP
Sbjct: 521 P------PQAPSQANHQTRAQPAQDAD--------NLTTHLSQVDEPQQKQILGEKLYPR 566
Query: 505 VEQLE-RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN 559
VE + + A K+TGMLLE++ EVLH+LES EAL +KV EA++VL ++ Q +N
Sbjct: 567 VEAICGSEKAGKITGMLLEIENAEVLHMLESKEALDSKVQEAIDVLDKHSKTQESN 622
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L + L + F G I+S V RD +S + +VNF+ +DA +A++ L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N + + + +Q+ + G N++IKNL ID++ +
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVG----------------NIFIKNLEKDIDNKAIY 124
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCK+ D +G SKG FV F T E A+RA+ ++NG ++ K ++V
Sbjct: 125 DTFSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMS 184
Query: 313 KEERRARL 320
++ER ++
Sbjct: 185 RKERMEKI 192
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/588 (45%), Positives = 364/588 (61%), Gaps = 51/588 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + R+ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D +DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + A P
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSG-----YFMAAIPQ 415
Query: 363 IIPPQAGFGYQQ--QLVPGMRPAG--------APMPNFFVPVVSQGQQGQRPGGRRGAGP 412
A + Q QL PG R A MPN P + Q P A
Sbjct: 416 AQNRAAYYSANQLAQLRPGPRWATQGVRPQHFQNMPNAMRPTAPRPQ----PLNTIRAAA 471
Query: 413 VQQTQQPLPIMPHQMPPRGHAYR--------YPLGRNMQDFPFDMGAGSMLPVPVDMGAG 464
TQ P + ++P + R P+ R M + + G + A
Sbjct: 472 TTNTQVPRMMASQRIPTQAVNQRPANASAAAAPV-RAMPQYKYAAGVRNTQ----QHMAS 526
Query: 465 IPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
P+ ++ QP P+TA + LA A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 527 QPQ--VTMQQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKIT 582
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS----VAQQQANNPA 561
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A Q+++ PA
Sbjct: 583 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSSTPA 630
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + + + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + + N+YIKN G+ +DDEKLKELFS++G S +VM D
Sbjct: 177 KEREAELGARAREFT----------NVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + + +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMK 284
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/577 (45%), Positives = 361/577 (62%), Gaps = 57/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/579 (45%), Positives = 361/579 (62%), Gaps = 59/579 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAATAAPRAVAPYKYASS 517
Query: 456 ---PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 512
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + +
Sbjct: 518 VRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNL 575
Query: 513 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 614
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/577 (45%), Positives = 361/577 (62%), Gaps = 57/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+K L+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/578 (45%), Positives = 362/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D I+DE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGINDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHAQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 271/593 (45%), Positives = 369/593 (62%), Gaps = 60/593 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + R+ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D +DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGL---------GQQ 353
KPLYVA+AQRKEER+A L Q+ Q P P P PSG +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQTQNRA 420
Query: 354 FLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMP---NFFVPVVSQGQQGQR 403
Y A + P + Q Q +PG MRP+ AP P N P + Q R
Sbjct: 421 AYYSANQLAQLRPSPRWTTQGVRPQHFQNMPGAMRPS-APRPQALNAIRPTAAGNAQVPR 479
Query: 404 -------PG---GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAG 452
P G+R AG P+ MP Y+Y G RN Q
Sbjct: 480 MMASQRMPAQTLGQRAAGASTTAAAPVRTMPQ--------YKYAAGVRNPQQH-----MA 526
Query: 453 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 512
S VP+ A + + GQ P+TA + LA+A P++Q+ +LGE L+PL++ +
Sbjct: 527 SQPQVPMQQPAVLVQ-----GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQDVHPSL 578
Query: 513 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS----VAQQQANNPA 561
A K+TGMLLE+D +E+LH+LESPE+L++K+ EA+ VL++ A Q++ PA
Sbjct: 579 AGKITGMLLEIDNSELLHMLESPESLRSKMDEAVAVLQAHQAKEAAQKSTTPA 631
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + + + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + + N+YIKN G+ +DDEKLKELFS++G S +VM D
Sbjct: 177 KEREAELGARAREFT----------NVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G SKG GFV+F E+A +A+ +MNGK + + +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 GGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMK 284
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/574 (45%), Positives = 360/574 (62%), Gaps = 43/574 (7%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNIL
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D I
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 305
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLY
Sbjct: 306 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAIIP 365
VA+AQRKEER+A L Q+ Q P P P PSG + Q A P
Sbjct: 365 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYP 424
Query: 366 P--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 410
P Q + Q +PG +RPA AP P F + Q + +R A
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRVA 483
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
QT P P A P R + + + G + P P+
Sbjct: 484 NTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ--V 530
Query: 471 SVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+
Sbjct: 531 TMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEI 588
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 589 DNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS +I D + +S G+ +V ++
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
++ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PRDSERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 261/576 (45%), Positives = 362/576 (62%), Gaps = 41/576 (7%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNIL
Sbjct: 87 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 146
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A
Sbjct: 147 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 205
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 206 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D I
Sbjct: 266 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 325
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLY
Sbjct: 326 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 384
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPG-------PSGLGQQFLYGQA 359
VA+AQRKEER+A L Q+ Q P P PP P + Y +
Sbjct: 385 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAAYYPAS 444
Query: 360 PPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGP 412
A + P + Q Q +PG +RPA AP P F + Q + +R A
Sbjct: 445 QIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRVANT 503
Query: 413 VQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV 472
QT P P A P R + + + G + P P+ ++
Sbjct: 504 STQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ--VTM 550
Query: 473 GQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D
Sbjct: 551 QQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDN 608
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+E+LH+LESPE+L++KV EA+ VL++ ++A A
Sbjct: 609 SELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 644
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/575 (45%), Positives = 365/575 (63%), Gaps = 45/575 (7%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNIL
Sbjct: 87 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 146
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A
Sbjct: 147 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 205
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 206 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D I
Sbjct: 266 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 325
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLY
Sbjct: 326 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 384
Query: 307 VAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQQFLY 356
VA+AQRKEER+A L Q+ Q +R V P + P P P G P + Y
Sbjct: 385 VALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNRAAYY 443
Query: 357 GQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRG 409
+ A + P + Q Q +PG +RPA AP P F + Q + +R
Sbjct: 444 PPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRV 502
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 469
A QT P P A P R + + + G + P P+
Sbjct: 503 ANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ-- 549
Query: 470 ASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE
Sbjct: 550 VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLE 607
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 608 IDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 642
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 169/318 (53%), Gaps = 36/318 (11%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-------------- 77
+PS ++++ +L + L++ FS G ILS ++ D
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPE 61
Query: 78 -------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 130
G+ F + E ++ A+D +N +I K V + +R+ K+
Sbjct: 62 LLPAPQPGEEVQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSG 117
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E
Sbjct: 118 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 176
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+
Sbjct: 177 KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDER 226
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV A
Sbjct: 227 LKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 286
Query: 311 QRKEERRARLQAQFSQMR 328
Q+K ER+ L+ +F QM+
Sbjct: 287 QKKVERQTELKRKFEQMK 304
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 361/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRVVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDIKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 280/586 (47%), Positives = 361/586 (61%), Gaps = 81/586 (13%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD +NFT + RIM+S RDPS+RKSG GNIF+KNLD SID+KAL+DTFS
Sbjct: 42 VADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSL 101
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
FGNILSCK+A + +G SKG+G+V +E E+A AI K+NGMLI +VFVGHF ++Q+R
Sbjct: 102 FGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR 161
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFE 180
+ N +VKN+ TD DL K F +G + SAVVM+D ++ FGFVN+E
Sbjct: 162 PDA---DDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYE 218
Query: 181 NADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
+D A KAV+ALNGK + D E YVGKAQK+SERE+EL+ +FEQ E ++K+QG+
Sbjct: 219 ESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGV 278
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
NLY+KNL D + D++L+E F+E GTITS +VMRDP+G S+G GFV FSTPEEA++A+AEM
Sbjct: 279 NLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEM 338
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL 355
NGK+I KP+YVA+AQRKE RRA+L+AQ +Q R G V MPM GQ +
Sbjct: 339 NGKLISGKPVYVALAQRKEVRRAQLEAQHAQQR---AGMVVGRGMPM--------GQPPM 387
Query: 356 YGQAP-----PAIIPPQA--GFGYQQQLVP----------GMRPAGAPMPNFF-VPVV-- 395
YG AP P +PPQA GF Y QQ++P G R GAP P + +P +
Sbjct: 388 YGAAPMFYGQPGQLPPQARQGFMYPQQMMPRGVQRGPMPYGARVPGAPAPGGYPMPWLRH 447
Query: 396 ---------SQGQQGQRPGGR-RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 445
+ G RP G R P T + P P R D
Sbjct: 448 AHAAAAWPAASWPSGPRPAGSLRALRPTAATSSTR-LTPATTPAR-------------DV 493
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P G M P AG P P+T S ALA ASPE Q+ ++GE LYPL+
Sbjct: 494 P---PQGVMPPAAPVQNAG----------PEPLT--SAALAAASPEIQKNMIGERLYPLI 538
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ + + A K+TGMLLEMD E+LHLLESPEAL+AK+ EAM VL +
Sbjct: 539 HRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAMTVLEA 584
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 131/277 (47%), Gaps = 28/277 (10%)
Query: 61 FSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
+ G + S ++ D + +S G+ +V F N A+ A+D +N I V +
Sbjct: 11 IKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKG----VPCRIMW 66
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVN 178
+R+ K+ N+FVKNLD S ++ L F +G I S V + G SK +G+V+
Sbjct: 67 SQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVH 126
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
+E A+ A +A+ +NG E +VG QK+ +R D N Y
Sbjct: 127 YETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRP---------------DADDWTNCY 171
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAEMN 296
+KN+ D L + F FG + S VM+D + ++G GFV + + A +A+ +N
Sbjct: 172 VKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALN 231
Query: 297 GKMI-----VSKPLYVAVAQRKEERRARLQAQFSQMR 328
GK + +YV AQ++ ER L+ +F Q++
Sbjct: 232 GKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLK 268
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/564 (46%), Positives = 358/564 (63%), Gaps = 47/564 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + D LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+P+EA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR--MPMYPPGPSGLGQQFLYGQAP 360
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + + P P G F+
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPTPGGY---FM----- 410
Query: 361 PAIIPPQAGFG---YQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 417
PA+ PQA Y + MRP + QQG RP G +G +
Sbjct: 411 PAV--PQAQNRPPYYAPNQIAQMRPN------------PRWQQGGRPQGFQGVPNTIRQS 456
Query: 418 QPLPIMPHQMPPR----------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
P P + H P R + P R + P+ A P P P+
Sbjct: 457 GPRPALRHLTPARVPTAVQNLSPRPSVATPAPRAVP--PYKYAANVRSPHPAIQPLQTPQ 514
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
V P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E
Sbjct: 515 PAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSE 572
Query: 528 VLHLLESPEALKAKVAEAMEVLRS 551
+LH+LESPE+L++KV EA+ VL++
Sbjct: 573 LLHMLESPESLRSKVEEAVAVLQA 596
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/575 (45%), Positives = 361/575 (62%), Gaps = 37/575 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLP---VPVDMG 462
+R A QT M PR A ++ P + AG P +
Sbjct: 480 QRVANTSTQT----------MGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQPQ 529
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
+ + V P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE
Sbjct: 530 VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLE 587
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 588 IDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/577 (45%), Positives = 361/577 (62%), Gaps = 57/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q R M ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ-REAGMR-ALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--------------------------- 455
+ H + P G+A P R + +G + +
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/578 (45%), Positives = 361/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+ KSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLHKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/587 (45%), Positives = 379/587 (64%), Gaps = 44/587 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GNIFIKNLDK+ID+KAL+DTFS+F
Sbjct: 64 ADAERALDTMNFDAIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAF 123
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-E 123
GNILSCKIA D +G S G+GFV FE +E+A+N+I+K+NGML+N K+VFVG F+ ++ER E
Sbjct: 124 GNILSCKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLE 182
Query: 124 TVAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKNL+E+ D+ L+++F +G I SA +M +G+ + FGFV+F++
Sbjct: 183 MLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDH 242
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ AAKAVE LN K+ + +E YVG+AQKK+ER+ ELK +FE+ E ++++QG+NLY+KNL
Sbjct: 243 EAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNL 302
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+ IDDE+L++ FS+FGTITS +VM + G +KG GFV FS+PEEA++A+ EMNG+++V+
Sbjct: 303 DEQIDDERLRKEFSQFGTITSARVMTE-GGRTKGFGFVCFSSPEEATKAVTEMNGRIVVA 361
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRKE+R+A L AQ+ Q MR G + ++ PG +G F+
Sbjct: 362 KPLYVALAQRKEDRKAHLAAQYMQRIAGMRMQGQGVN-----QIFGPGGTGY---FV--- 410
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 418
P + GF Q+ P +R P P Q PG P TQQ
Sbjct: 411 -PTMAQTQRGGFYAPTQIAPQVR--STPRWQAPNPRAQTAGYAQLPGSGPMRNPRPNTQQ 467
Query: 419 PLPIMPHQMPPRGHAYRYPLGR-NMQDFPFDMGAGSMLPVP-------------VDMGAG 464
+ + P G +R P + N P M AG P V GA
Sbjct: 468 -VRAGANSRPITGE-FRMPGAQVNRPAQPGAMQAGGQQRAPFKYTQAVRNATGQVPGGAA 525
Query: 465 IPRRDASV---GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
P+ +V GQ P+TA + LA A+P++Q+ +LGE L+PL++ + D A K+TGMLL
Sbjct: 526 QPQAQTAVVIQGQE-PLTA--SMLAAAAPQEQKQMLGERLFPLIQSMYPDLAGKITGMLL 582
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 568
E+D +E+LH+LES E+LKAKV EA+ VL++ +++ +P L S S
Sbjct: 583 EIDNSELLHMLESRESLKAKVEEAVAVLQAHQAKESTDPIPSLKSSS 629
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 161/288 (55%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 72
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I + + + +R+ K+ N+F+KNLD++ ++ L F +G I S
Sbjct: 73 MNFDAIKGRPIRIMW----SQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILS 128
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D +G S +GFV+FE + A ++E +NG + ++ +VG+ + ER + L
Sbjct: 129 CKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEML--- 184
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ KF N+Y+KNL +++DD+KL+E+F FG I S K+M G +G GFV
Sbjct: 185 -----GDKAKKF--TNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFV 237
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F E A++A+ E+N K + K +YV AQ+K ER+A L+ +F +M+
Sbjct: 238 SFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMK 285
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/578 (45%), Positives = 361/578 (62%), Gaps = 59/578 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+P+EA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR--MPMYPPGPSGLGQQFLYGQAP 360
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + + P P G F+
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPTPGGY---FM----- 410
Query: 361 PAIIPPQAGFG---YQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 417
PA+ PQA Y + MRP + QQG RP G +G +
Sbjct: 411 PAV--PQAQNRPPYYAPNQIAQMRPN------------PRWQQGGRPQGFQGVPNAIRQS 456
Query: 418 QPLPIMPHQMP------PRG---HAYRYPLGRNMQDF---------------PFDMGAGS 453
P P + H P RG R + +Q+ P+ A
Sbjct: 457 GPRPTLRHLTPASNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANV 516
Query: 454 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 513
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 517 RSPHPAIQPLQTPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHNNLA 574
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 575 GKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 612
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/592 (44%), Positives = 366/592 (61%), Gaps = 63/592 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLD+SID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV FE +E+A +I+K+NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E ++E L+ +F ++G ITS VM DGKSK FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK+ + + YVG+AQKK+ER+QELK +FE E ++++QG+NLY+KN
Sbjct: 243 EAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-------SKGSGFVAFSTPEEASRALAE 294
L D+IDDE+L++ F+ FGTITS KVM + + SKG GFV FS+PEEA++A+ E
Sbjct: 303 LDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTE 362
Query: 295 MNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGL 350
MNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q MR MG PPGPS
Sbjct: 363 MNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRMANMRMHQMGHQ------FMPPGPSSY 416
Query: 351 -------GQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR-PAGAPMPNFFVPVVSQGQQGQ 402
Q++ G I + Q + PG + A M N + P Q
Sbjct: 417 FVPTIPTAQRYFTGGTQLTPIRSNPRWAAQTPIRPGAQGGTAAYMANSYRPSARPPNQPM 476
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMP-----------------PRGHAYRYPLGRNMQDF 445
G G V P PI Q P R ++Y NM++
Sbjct: 477 AMRNNIGLGNV-----PRPITGQQPPNMQGRPLAGQQVVVATGSRAATFKYT--SNMRNP 529
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P M G+M PV I ++ P+TA T LA A P++Q+ +LGE L+PL+
Sbjct: 530 PQAM--GTMPATPVQQAVHIQGQE-------PLTA--TMLAAAQPQEQKQMLGERLFPLI 578
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+++ D A K+TGMLLE+D TE+LH+LE E+LK KV EA+ VL++ +QA
Sbjct: 579 QRMYADLAGKITGMLLEIDNTELLHMLEHNESLKNKVEEAVAVLQAHQAKQA 630
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L I L D FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI + + + +R+ K+ NVF+KNLD S ++ + F +G I
Sbjct: 71 TMNFDLIRGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D +G SK +GFV+FE + A K++E +NG + ++ YVG+ + ERE+EL
Sbjct: 127 SCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN G+ + +E+L+ +F +FG ITS KVM G SKG GF
Sbjct: 186 --EKAKLFT-------NVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF +PE A A+ +NGK +V KPLYV AQ+K ER+ L+ +F ++
Sbjct: 237 VAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALK 286
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/580 (45%), Positives = 363/580 (62%), Gaps = 64/580 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD-------------------MGA 463
+ H + P G+A P R + +G +P V A
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVG----VPTAVQNLAPRAAVAAAAPRAVAPYKYA 513
Query: 464 GIPRRDASVGQPM------------PITALSTALANASPEQQRTLLGESLYPLVEQLERD 511
R QP+ P+TA + LA A P++Q+ +LGE L+PL++ + +
Sbjct: 514 SSVRSPHPAIQPLQAQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSN 571
Query: 512 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 572 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 611
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 269/594 (45%), Positives = 363/594 (61%), Gaps = 58/594 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK+ FG+YG S VM D GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F+ FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP- 361
KPLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PP
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPA 414
Query: 362 ----AIIPPQAGFGYQQQLVP-------GMRP------AG-----APMPNFFVPVVSQGQ 399
A PP G QL P G RP AG AP P F + Q
Sbjct: 415 QNRAAYYPP----GQIAQLRPSPRWTAQGARPHPFQNMAGAIRPSAPRPPTFSTMRPTSQ 470
Query: 400 QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRG----HAYRYPLG-RNMQDFPFDMGAGSM 454
+ +R A QT P P Y+Y G RN Q +M
Sbjct: 471 VPRVMSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQHLNTQPQVAM 530
Query: 455 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
V + GQ P+TA + LA A P++Q+ +LGE L+PL++ + A
Sbjct: 531 QQPAVHVQ----------GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAG 577
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 568
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA A ++ S +
Sbjct: 578 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA---HQAKEAAQKVVSAT 628
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKE F ++G S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G S+G GFV+F E+A +A+ +MNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/589 (44%), Positives = 358/589 (60%), Gaps = 67/589 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP---------------- 466
+ H P R DF A L G G+P
Sbjct: 462 LRHLAPTGSEC----PDRLAMDFGGAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAAA 517
Query: 467 -------RRDASVGQPMPITA-----------------LSTALANASPEQQRTLLGESLY 502
+ +SV P P ++ LA A P++Q+ +LGE L+
Sbjct: 518 PRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLF 577
Query: 503 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 578 PLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 626
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/583 (45%), Positives = 360/583 (61%), Gaps = 48/583 (8%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNIL
Sbjct: 2 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 61
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A
Sbjct: 62 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 120
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 121 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 180
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D I
Sbjct: 181 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 240
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP Y
Sbjct: 241 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFY 299
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAIIP 365
VA+AQRKEER+A L Q Q P P P PSG + Q A P
Sbjct: 300 VALAQRKEERQAHLTNQHMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYP 359
Query: 366 P--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 410
P Q + Q +PG +RPA AP P F + Q + +R A
Sbjct: 360 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRVA 418
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
QT P P A P R + + + G + P P+
Sbjct: 419 NTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ--V 465
Query: 471 SVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+
Sbjct: 466 TMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEI 523
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
D +E+LH+LESPE+L++KV EA+ VL + AQ+ N+ A
Sbjct: 524 DNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSAA 566
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/587 (43%), Positives = 363/587 (61%), Gaps = 61/587 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + ++ RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF++FGN+L
Sbjct: 100 RALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVL 159
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL------RKQER 122
SCK+ATD G+SKG+GFV +E E+A+ AI +NGML+NDK+V+VGH + R+++
Sbjct: 160 SCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQS 219
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ +K +F N++VKNLD T +D K+F ++G +TSAV+ D G+S+ FGFVNFE
Sbjct: 220 KLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETH 279
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAVE L+ ++ R+ +V +AQKK+ERE+EL+ +EQA E + K+QG+NLYIKNL
Sbjct: 280 EEAQKAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNL 339
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F FG+ITS KVMRD G SKG GFV FS+P+EA++A+AEMN KMI S
Sbjct: 340 EDDIDDERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGS 399
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP-MYPPGP----------SGLG 351
KPLYV++AQR+E RR +L++Q +Q + M + +P Y GP G
Sbjct: 400 KPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGIPGGYLNGPMYYPPGPGAYPPPG 459
Query: 352 QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAG 411
+ + G P ++PP+ + Q+ PAG P+P + GQ P G
Sbjct: 460 GRGMMGYGQPGMLPPRPRYAPNNQV-----PAGIPIPAPY---------GQAPPQAYGGI 505
Query: 412 P---------VQQTQQPLPIMPHQMP----PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 458
P + P P+ P PRG+A P G P AG P
Sbjct: 506 PGYPRAPRGPPPAGRGGPPADPNSPPVNGAPRGNA---PQGAAANRPP----AGGQPPAA 558
Query: 459 VDMGAGIPR--------RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER 510
A P+ A G+ ITA ALANASP +Q+ +LGE +Y + +
Sbjct: 559 RAPTANRPQARQAPPAAVAAPTGEVPTITA--AALANASPMEQKQMLGEVIYMKIAPSQP 616
Query: 511 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ A K+TGMLLEMD TE+LHLLESP+A+ +KV EA+ VL ++++
Sbjct: 617 ELAGKITGMLLEMDNTELLHLLESPDAMNSKVNEALAVLHEFTKEES 663
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 110/212 (51%), Gaps = 24/212 (11%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 45 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 104
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 105 LNYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 148
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV---- 307
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 149 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHI 208
Query: 308 ---AVAQRKEERRARLQAQFSQMRPVAMGPSV 336
A ++ ++ + ++AQF+ + + P V
Sbjct: 209 SRKASSRERQSKLEEMKAQFTNIYVKNLDPEV 240
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/358 (60%), Positives = 270/358 (75%), Gaps = 4/358 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AA A+DVLNF +N K IR++YS RDP++R+SG GNIFIKNLDK+ID+KAL DTF+ F
Sbjct: 89 NDAAHAIDVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQF 148
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G I S K+A DG G SKG+GFVQFE +E+AQ AID +NGM +NDKQV+VG F R+ ER
Sbjct: 149 GTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAERSN 208
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ KFNNV+VKNL E+ +DE L++ F E+G +TS V+MRD +GKSK FGFV +E +
Sbjct: 209 TG-EAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEG 267
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AVE L+G D++ W V +AQKK+ERE ELK +F+Q +E ++K G NLYIKNL D
Sbjct: 268 AAAAVEKLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQERRERMEKMAGANLYIKNLED 327
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
DDEKL+ELF EFGTITSC+VMRD SG+S+GS FVAFS+P+EA+RA+ EMNGKM+ +KP
Sbjct: 328 GTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKP 387
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
LYVA+AQRKEERR RLQAQF+Q P G +P M Y P P G YGQ PPA
Sbjct: 388 LYVALAQRKEERRMRLQAQFAQRMP---GAGMPGGMAPYMPPPGVPGAPMYYGQPPPA 442
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 186/324 (57%), Gaps = 18/324 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SAA A +V N +N + + +GT ++++ +L+ S+ L++ FSS G
Sbjct: 2 SAATATNVTNDAKASNATANADGTTPAAQQPGAGTSSLYVGDLETSVTEAQLYEKFSSIG 61
Query: 66 NILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
++S ++ D + +S G+ +V F++ A +AID LN +IN K + V + +R+
Sbjct: 62 PVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAIDVLNFQVINGKPIRVLY----SQRDP 117
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
++ N+F+KNLD++ ++ L F ++GTITSA V DG G SK +GFV FE +
Sbjct: 118 AVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEA 177
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A A++ +NG + +D++ YVG Q+++ER + +F N+Y+KNL +
Sbjct: 178 AQAAIDNVNGMELNDKQVYVGPFQRRAERSNTGEAKFN-------------NVYVKNLSE 224
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
++ DEKL+E F+E G +TSC +MRD G SKG GFV + PE A+ A+ +++G K
Sbjct: 225 NLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKT 284
Query: 305 LYVAVAQRKEERRARLQAQFSQMR 328
V AQ+K ER A L+A+F Q R
Sbjct: 285 WVVCRAQKKAEREAELKAKFDQER 308
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 66/81 (81%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P+ L++ L+ A+P+QQR +LGE+LYPL+E + AAK+TGMLLEMDQ+EVLHL+ESP+
Sbjct: 492 PMAILASQLSAAAPDQQRMILGEALYPLIESKDAANAAKITGMLLEMDQSEVLHLIESPD 551
Query: 537 ALKAKVAEAMEVLRSVAQQQA 557
AL +KV EA+ VL++ A++ A
Sbjct: 552 ALTSKVQEALAVLKAAAEEGA 572
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/581 (45%), Positives = 365/581 (62%), Gaps = 45/581 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D +G SKG+GFV FE +E+A+ +K+NGML+ND++VFVG F ++ERE
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQQF 354
LYVA+AQRKEER+A L Q+ Q +R V P + P P P G P +
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNRAA 421
Query: 355 LYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
Y + A + P + Q Q +PG +RPA AP P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQ 480
Query: 408 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
R A QT P P A P R + + + G + P P+
Sbjct: 481 RVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ 529
Query: 468 RDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 530 --VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 585
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
LE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/584 (45%), Positives = 364/584 (62%), Gaps = 51/584 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++FG+YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAVE +NGK + + +VG+AQKK+ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPAA-GGYFM-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ Q+ Y P P P + QQG RP G +G + P P
Sbjct: 413 VPQAQSRPTY---YAPNQMTQMRPNPRW--------QQGGRPQGFQGMPNAMRQSGPRPA 461
Query: 423 MPHQMPP-----RG---HAYRYPLGRNMQDF---------------PFDMGAGSMLPVPV 459
+ H P RG A R +G Q+ P+ + P P
Sbjct: 462 LRHLSPANAPASRGLPAAAQRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPG 521
Query: 460 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
P+ V P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 522 VQPLQAPQPAVLVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 579
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
LLE+D +E+LH+LESPE+L++KV EA+ VL++ QA A Q
Sbjct: 580 LLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQAKKEAAQ 620
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L I + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/583 (45%), Positives = 363/583 (62%), Gaps = 54/583 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAG---------------FGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
+ PQA F QLV +RP A + V + GG
Sbjct: 413 V--PQASKECQVLYASLGLVQLFAIWLQLVM-LRPLVASLLPLRESVSKLALRSVAWGGG 469
Query: 408 R------------GAGPVQ-------QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFD 448
R GAG Q Q+ +P + PR A R + P+
Sbjct: 470 RSECPDRLAMDFGGAGAAQQGLTDSCQSGGGVPTAVQNLAPR-TAVATAAPRAVA--PYK 526
Query: 449 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 508
+ P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ +
Sbjct: 527 YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTM 584
Query: 509 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 585 HSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 627
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ ++ N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG SKG GF
Sbjct: 186 KAKEFT----------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLK 284
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/578 (45%), Positives = 360/578 (62%), Gaps = 59/578 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + D LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+P+EA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR--MPMYPPGPSGLGQQFLYGQAP 360
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + + P P G F+
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPTPGGY---FM----- 410
Query: 361 PAIIPPQAGFG---YQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 417
PA+ PQA Y + MRP + QQG RP G +G +
Sbjct: 411 PAV--PQAQNRPPYYAPNQIAQMRPN------------PRWQQGGRPQGFQGVPNTIRQS 456
Query: 418 QPLPIMPHQMP------PRG---HAYRYPLGRNMQDF---------------PFDMGAGS 453
P P + H P RG R + +Q+ P+ A
Sbjct: 457 GPCPALRHLTPASNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANV 516
Query: 454 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 513
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A
Sbjct: 517 RSPHPAIQPLQTPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHNNLA 574
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 575 GKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 612
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 266/605 (43%), Positives = 364/605 (60%), Gaps = 83/605 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNM----------------QDFPFDMGAGSMLPVPVDMGAGIP 466
+ H + P G+A P R + DF A L G G+P
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGGVP 517
Query: 467 -----------------------RRDASVGQPMPITA-----------------LSTALA 486
+ +SV P P ++ LA
Sbjct: 518 TAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLA 577
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+
Sbjct: 578 AAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAV 637
Query: 547 EVLRS 551
VL++
Sbjct: 638 AVLQA 642
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/586 (44%), Positives = 357/586 (60%), Gaps = 37/586 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RAL+ +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL DTFS+F
Sbjct: 132 ADAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAF 191
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G SKG+GFV FE +++A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 192 GNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 250
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D LK++FG++G S VM D G SK FGFVNFE
Sbjct: 251 ELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERH 310
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 311 EDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNL 370
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 371 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 429
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPG-------PSGLGQQFL 355
KPLY+A+AQRKEER+A L Q+ Q P P PP P +
Sbjct: 430 KPLYIALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPPSGYFMTAIPQTQNRPAY 489
Query: 356 YGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMP-NFFVPVVSQGQQGQRPGGR 407
Y + A + P + Q Q L +RPA A P P SQ +G R
Sbjct: 490 YPASQMAPLRPSPRWTSQGARPHPFQNLPGAIRPAAARPPFGSMRPTSSQLPRGVGASQR 549
Query: 408 RGAGPVQQTQQPLPIMPHQMPPR----GHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMG 462
Q PL G Y+Y G RN Q V V
Sbjct: 550 IVNSSTQALGPPLGASAGAAGAPGVRMGPQYKYAAGVRNPQHH-----------VNVQPQ 598
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
A + + V P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE
Sbjct: 599 ASVQQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLE 656
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 568
+D +E+LH+LESPE+L++KV EA+ VL++ ++A A + A+ +
Sbjct: 657 IDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVKSAAAT 702
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/571 (45%), Positives = 352/571 (61%), Gaps = 51/571 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+ KSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A + P +
Sbjct: 480 QRVANTSTQTMGPRPA----------------------------AAAAAATPAVRTVTMQ 511
Query: 467 RRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ V P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +
Sbjct: 512 QPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNS 569
Query: 527 EVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 570 ELLHMLESPESLRSKVDEAVAVLQAHQAKEA 600
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLHKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/566 (45%), Positives = 358/566 (63%), Gaps = 35/566 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +AVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPAA-GGYFM-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV--------- 413
+ Q+ Y P P P + QG QG P R +GP
Sbjct: 413 VPQAQSRPTY---YAPNQMAQMRPNPRWQQAGRLQGFQGM-PNAMRQSGPRPALRHLTPA 468
Query: 414 --QQTQQPLPIMPHQ--MPPRGH--AYRYPLGRNMQDF--PFDMGAGSMLPVPVDMGAGI 465
Q + LP P + +PP A R P+ P+ + P P
Sbjct: 469 GNAQASRGLPAAPQRVGVPPAAQNLAPRAPVAAATPRAVPPYKYASNVRSPHPAIQPLQA 528
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
P+ V P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D
Sbjct: 529 PQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDN 586
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRS 551
+E+LH+LESPE+L++KV EA+ VL++
Sbjct: 587 SELLHMLESPESLRSKVEEAVAVLQA 612
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M T + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MSTTASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/589 (43%), Positives = 368/589 (62%), Gaps = 56/589 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RAL+ +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTF++F
Sbjct: 63 ADAERALEGMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV FE +E+A +I+K+NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E +DE L+++F +YG ITS VM DG S+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +A LNGK+ + + YVG+AQKK+ER++ELK +FEQ E + ++QG+NLY+KN
Sbjct: 243 DAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 303 LDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG-------------PSVPPRMPMYP 344
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG P++PP Y
Sbjct: 362 TKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPAQRFYG 421
Query: 345 PGPSGLGQQFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
P + A PA+ P A Y P M+P P P + G
Sbjct: 422 PAQMTQIRPSPRWTAQPAVRPNAQSAASAY-----PNMQPPFRPAPRGPAQAALRSSMGA 476
Query: 403 RP-GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 461
RP G++G + PI+P P G+ Y NM++ P
Sbjct: 477 RPITGQQGVATASSIRA--PIVPQSGRPAGYKYT----SNMRNPP--------------- 515
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
P+ + P+T +T LA A ++Q+ +LGE L+PL++++ D A K+TGMLL
Sbjct: 516 ---APQPAVHIQGQEPLT--TTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLL 570
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 570
E+D +E+LH+LE E+LKAKV EA+ VL++ +Q D++A L +N
Sbjct: 571 EIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQQATKKDEVA-LKIN 618
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FS+ G +LS ++ D + +S G+ +V F+ A+ A++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 GMNFDIIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K++E +NG + ++ YVG+ + ERE+EL
Sbjct: 127 SCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN G+ DE L+E+F ++G ITS KVM G S+G GF
Sbjct: 186 --EKAKLFT-------NVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A RA E+NGK +V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 286
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/586 (44%), Positives = 358/586 (61%), Gaps = 45/586 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + DE L+++F +YG S VM D +GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P P PSG + A
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQAAPPSGYFMAAIPQAQNRA 420
Query: 363 IIPPQAGFGYQ-----------------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG 405
P AG Q Q + G+RP+G P P F V Q +
Sbjct: 421 AYYPAAGQMAQLRPGPRWTTQNVRPQHFQNMSGGIRPSG-PRPQTFSTVRPSSQVPRMMT 479
Query: 406 GRRGAGPVQQTQQPLP---IMPHQMPPRG-HAYRYPLG-RNMQDFPFDMGAGSMLPVPVD 460
+R T P P P RG Y+Y G RN Q +M V
Sbjct: 480 TQRVGQSTDTTMGPRPATAAAAAATPVRGVPQYKYAAGVRNPQQHMNTQPQVTMQQPAVH 539
Query: 461 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
+ GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 540 VQ----------GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGML 586
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
LE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ N A
Sbjct: 587 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKTVTNSA 632
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 175/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGQPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN GD +DDEKL+ELFS++G S +VM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMK 284
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/571 (46%), Positives = 359/571 (62%), Gaps = 48/571 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A RALD +NFT + RIM+S RDPS+RKSG GNIF+KNLD SID+KAL+DTFS
Sbjct: 127 LVDAERALDTMNFTCIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSL 186
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A D +GQSKG+G+V +E E+A AI+K+NGMLI +VFVGHF ++QER
Sbjct: 187 FGNILSCKVANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQERP 246
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
+ + N +VKNL TD DL++ F +G + SAVVM+D ++ FGFVN+E+A
Sbjct: 247 DI---EDWTNCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDA 303
Query: 183 DDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
D A AVE L+GK F D E YVGKAQK++ERE+EL+ +F+Q E ++K+QG+NL
Sbjct: 304 DGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVNL 363
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
Y+KNL D + DE+L+E F+ +GTITS +VMRD +G S+G GFV FSTPEEA+ A+AEMNG
Sbjct: 364 YVKNLDDLLQDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNG 423
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQFSQM-------RPVAMGPSVPPRMPMYPPGPSGL 350
K+I KP+YVA AQRKE RRA+L+AQ +Q R + MG PM+ P+ +
Sbjct: 424 KLITGKPVYVAFAQRKEVRRAQLEAQHAQRATGVLVNRGMPMGQPPMYGAPMFYAQPNQM 483
Query: 351 ----GQQFLY-GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR-- 403
Q ++Y Q P + P+ FG+ ++ PAG M + +P+ Q Q +
Sbjct: 484 PMQGRQAYMYPQQMLPRGVHPRVPFGFGGRMPGAPGPAGFSMAGYGMPMQQQRQPRRGRQ 543
Query: 404 ---PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 460
P G P ++ + R H R LG NM +G ++P
Sbjct: 544 VPGPAGAPNGMPNRRN------FKYTTGARNHPSREGLGNNM--------SGGVMP---- 585
Query: 461 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
G+ P G P S ALA ASPE Q+ ++GE LYPL+ + + + A K+TGML
Sbjct: 586 QGSSTPMG----GAPALEPLTSAALAAASPEAQKNMIGERLYPLIHRQQNELAGKITGML 641
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
LEMD +E+LHLLESP+AL +K+ EA++VL +
Sbjct: 642 LEMDNSELLHLLESPDALDSKIQEAIQVLEA 672
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 26/296 (8%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ ++ + L + F++ G + S ++ D + +S G+ +V F N A+ A+
Sbjct: 75 TASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAERAL 134
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D +N I V + +R+ K+ N+FVKNLD S ++ L F +G I
Sbjct: 135 DTMNFTCIKG----VPCRIMWSQRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSLFGNI 190
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK +G+V++E A+ A +A+ +NG E +VG QK+ ER
Sbjct: 191 LSCKVANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQERP---- 246
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGS 277
D N Y+KNL D L+ F FG + S VM+DP S ++G
Sbjct: 247 -----------DIEDWTNCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGF 295
Query: 278 GFVAFSTPEEASRALAEMNGKMI-----VSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV + + A A+ ++GK V LYV AQ++ ER L+ +F Q++
Sbjct: 296 GFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLK 351
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 287
V FQ +LY+ ++ + + L E+F+ G + S +V RD + S G +V F +
Sbjct: 70 VQPFQTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVD 129
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
A RAL MN I P + +QR R
Sbjct: 130 AERALDTMNFTCIKGVPCRIMWSQRDPSLR 159
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 266/605 (43%), Positives = 363/605 (60%), Gaps = 83/605 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNM----------------QDFPFDMGAGSMLPVPVDMGAGIP 466
+ H + P G+A P R + DF A L G G+P
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGGVP 517
Query: 467 -----------------------RRDASVGQPMPITA-----------------LSTALA 486
+ +SV P P ++ LA
Sbjct: 518 TAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLA 577
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+
Sbjct: 578 AAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAV 637
Query: 547 EVLRS 551
VL++
Sbjct: 638 AVLQA 642
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/585 (45%), Positives = 361/585 (61%), Gaps = 52/585 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGAITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPAA-GGYFM-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ Q+ Y P P P + QQG RP G +G + P P
Sbjct: 413 VPQAQSRPTY---YAPNQMTQMRPNPRW--------QQGGRPQGFQGMPNAMRQSGPRPA 461
Query: 423 MPHQMPP------RG---HAYRYPLGRNMQDF---------------PFDMGAGSMLPVP 458
+ H P RG A R +G Q+ P+ + P P
Sbjct: 462 LRHLAPAGSAPASRGLPAAAQRVGVGTAAQNLGPRPPVAAPAPRAVPPYKYASSVRSPHP 521
Query: 459 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
P+ V P+TA + LA A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 522 AVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITG 579
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
MLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA A Q
Sbjct: 580 MLLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQAKKEAAQ 621
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/564 (46%), Positives = 358/564 (63%), Gaps = 31/564 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + D LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+P+EA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR--MPMYPPGPSGLGQQFLYGQAP 360
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + + P P G F+
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPTPGGY---FMPAVPQ 415
Query: 361 PAIIPPQAGFGYQQQLVPGMRPAGAPMPNFF--VPVVSQGQQGQRPGGRRGAGPVQQTQ- 417
PP Q+ P R P F VP + Q G RP R P TQ
Sbjct: 416 AQNRPPYYAPNQIAQMRPNPRWQQGGRPQGFQGVPNTIR-QSGPRPALRH-LTPASNTQA 473
Query: 418 -QPLPIMPHQ---------MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
+ LP P + + PR + P R + P+ A P P P+
Sbjct: 474 SRGLPTTPQRVGVPTAVQNLSPRP-SVATPAPRAVP--PYKYAANVRSPHPAIQPLQTPQ 530
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
V P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E
Sbjct: 531 PAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSE 588
Query: 528 VLHLLESPEALKAKVAEAMEVLRS 551
+LH+LESPE+L++KV EA+ VL++
Sbjct: 589 LLHMLESPESLRSKVEEAVAVLQA 612
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/588 (44%), Positives = 357/588 (60%), Gaps = 52/588 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + DE L+++F +YG S VM D +GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P P PSG + A
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQAAPPSGYFMAAIPQAQNRA 420
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
P A G QL PG P + V GG R +GP QT +
Sbjct: 421 AYYPAA--GQMAQLRPG--------PRWTTQNVRPQHFQNMSGGIRPSGPRPQTFS--TV 468
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG--------- 473
P PR + + M P A + PV G+P+ + G
Sbjct: 469 RPSSQVPRMMTTQRVGTQTMGPRPATAAAAAATPV-----RGVPQYKYAAGVRNPQQHMN 523
Query: 474 -QPM--------------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
QP P+TA + LA A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 524 TQPQVTMQQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITG 581
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
MLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ N A
Sbjct: 582 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKTVTNSA 629
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 175/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGQPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN GD +DDEKL+ELFS++G S +VM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMK 284
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/606 (42%), Positives = 370/606 (61%), Gaps = 70/606 (11%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD +NF L +RIM+S RDPS+RKSG GN+FIKNLD+SID+KA++DTFS+
Sbjct: 53 IADAERALDTMNFDILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSA 112
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A D +G SKG+GFV FE K+SA +I+K+NGML+N K+VFVG F+ + +RE
Sbjct: 113 FGNILSCKVAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDRE 172
Query: 124 T-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ + K + NV++KN+DE+ +++L ++F +YGTITS VM DG S+ FGFV FE+
Sbjct: 173 KELGQRAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFED 232
Query: 182 ADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+A KAV L+GKK + + +YV +AQKK+ER+QELK +FEQ E ++++QG+NLY+K
Sbjct: 233 PKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVK 292
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDE+L+ FS FGTI S KVM D G SKG GFV FS+PEEA++A+ +MNG+++
Sbjct: 293 NLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIV 351
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG-------PSG 349
+KPLYV +AQRK++R+A L +Q+SQ MR ++G P+Y PG P+
Sbjct: 352 GTKPLYVTLAQRKKDRKAHLDSQYSQRNTNMRMQSIG-------PIYQPGASNGYFVPTI 404
Query: 350 LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP-MPNFFVPVVSQGQQGQRPGGRR 408
Q+ YG I Q + +Q Q+ G AP PN + G + P G++
Sbjct: 405 PQPQYFYGPTQMTQIRSQPRWAFQSQVRAGTPQTAAPGYPNMATQHQNIGARAPVPAGQQ 464
Query: 409 GAGP----VQQTQQPLPIMPHQMP--------------PRGHAYRY-PLGRNMQDFPFDM 449
A V +P+ +MP G Y+Y P RN D
Sbjct: 465 AALARNVMVDTNARPISTAQQKMPGAVSAGSVHVPGARDTGSGYKYTPNMRN--PLSQDQ 522
Query: 450 GAGSMLPVPVD-MGAGIPRRDASVGQPM-----------------------PITALSTAL 485
G G P MG P + +GQ P+TA T L
Sbjct: 523 GIGQAQPGQAQGMGQSQPGQAQGMGQAQSGQAQGMEQVQPDKAAVHVYGQEPLTA--TML 580
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
A A PE Q+ +LGE L+PL+E++ + K+TGMLLE+D +++LH+LE E+LK +V +A
Sbjct: 581 ATAKPEDQKQMLGERLFPLIERMYPELTGKITGMLLEIDNSDLLHMLEHHESLKNQVEKA 640
Query: 546 MEVLRS 551
+ +L++
Sbjct: 641 VAMLQA 646
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 166/291 (57%), Gaps = 20/291 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDK 100
++++ +L + L + FS+ G ILS ++ +S G+ +V F+N A+ A+D
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDT 62
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+N + GH +R +R+ K+ NVF+KNLD S ++ + F +G I
Sbjct: 63 MNF------DILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNI 116
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V +D G SK +GFV+FE A +++E +NG + ++ +VG+ +++RE+EL
Sbjct: 117 LSCKVAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKEL- 175
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
GQ + N+YIKN+ +++++++L E+F ++GTITSCKVM G S+G G
Sbjct: 176 GQRAKLY---------TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFG 226
Query: 279 FVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQRKEERRARLQAQFSQMR 328
FVAF P+EA +A+ E++GK K YV AQ+K ER+ L+ +F Q +
Sbjct: 227 FVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYK 277
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/603 (43%), Positives = 366/603 (60%), Gaps = 81/603 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 85 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 144
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 145 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 203
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E D++LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 204 ELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 263
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 264 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 323
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 324 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 382
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 383 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILSQFQPAA-GGYFV-----PA 434
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 435 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 483
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA---------------GIP- 466
+ H + P G+A P R + +G+ + +D G G+P
Sbjct: 484 LRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPA 539
Query: 467 ---------------------RRDASVGQPMPITA-----------------LSTALANA 488
+ ASV P P ++ LA A
Sbjct: 540 AVPSLAPRATVAAAPRAVAPYKYAASVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAA 599
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ V
Sbjct: 600 PPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 659
Query: 549 LRS 551
L++
Sbjct: 660 LQA 662
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 34 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 93
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 94 MNFDVIKGKPIRIMWSQR 111
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 266/606 (43%), Positives = 363/606 (59%), Gaps = 83/606 (13%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+
Sbjct: 75 LTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 134
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 135 FGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 193
Query: 124 T-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 194 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK 253
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKN
Sbjct: 254 HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 313
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 314 LDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 372
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ P
Sbjct: 373 SKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----P 424
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
A+ PQA G P P P + QQG RP G +G + P P
Sbjct: 425 AV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRP 473
Query: 422 IMPHQMPPRGHAYRYPLGRNM----------------QDFPFDMGAGSMLPVPVDMGAGI 465
+ H + P G+A P R + DF A L G G+
Sbjct: 474 ALRH-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDGCQSGGGV 529
Query: 466 P-----------------------RRDASVGQPMPITA-----------------LSTAL 485
P + +SV P P ++ L
Sbjct: 530 PTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASML 589
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
A A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA
Sbjct: 590 AAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA 649
Query: 546 MEVLRS 551
+ VL++
Sbjct: 650 VAVLQA 655
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/603 (43%), Positives = 366/603 (60%), Gaps = 81/603 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG---------------AGIP- 466
+ H + P G+A P R + +G+ + +D G G+P
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPT 517
Query: 467 ----------------------RRDASVGQPMPITA----------------LSTALANA 488
+ +SV P P ++ LA A
Sbjct: 518 AVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAQPAVHVQGQEPLTASMLAAA 577
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ V
Sbjct: 578 PPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 637
Query: 549 LRS 551
L++
Sbjct: 638 LQA 640
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/604 (43%), Positives = 367/604 (60%), Gaps = 82/604 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG---------------AGIP- 466
+ H + P G+A P R + +G+ + +D G G+P
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPT 517
Query: 467 ----------------------RRDASVGQPMPITA-----------------LSTALAN 487
+ +SV P P ++ LA
Sbjct: 518 AVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAA 577
Query: 488 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 547
A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+
Sbjct: 578 APPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 637
Query: 548 VLRS 551
VL++
Sbjct: 638 VLQA 641
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/578 (45%), Positives = 359/578 (62%), Gaps = 55/578 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL DTFS+F
Sbjct: 54 TDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV FE +E+A +I+K+NGML+N K V+VG F+ ++ERE
Sbjct: 114 GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E +DE LK +F +YG ITS VM DG S+ FGFV FE+
Sbjct: 174 ELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDP 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +A LNGK+ + + YVG+AQKK+ER++ELK +FEQ E + ++QG+NLY+KN
Sbjct: 234 DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 294 LDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 352
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPR------MPMYPPGPSGLG 351
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG P +P PP P G
Sbjct: 353 TKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPSGASGFFVPSLPPAPRYYG 412
Query: 352 QQFL---------YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
+ + PP QA Y M+P P P + G
Sbjct: 413 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYA-----NMQPTYRPAPRAPAQSTIRTSLGA 467
Query: 403 RP-GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 461
RP G++G + +P P++ P + Y NM++ P
Sbjct: 468 RPITGQQGVAAAAASIRP-PLVSQSSRPANYKY----TPNMRNPP--------------- 507
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
P+ + P+T ST LA A ++Q+ +LGE L+PL++++ D A K+TGMLL
Sbjct: 508 ---APQPAVHIQGQEPLT--STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLL 562
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRS-VAQQQAN 558
E+D +E+LH+LE E+LKAKV EA+ VL++ A+QQA
Sbjct: 563 EIDNSELLHMLEHAESLKAKVDEAVAVLQAHQAKQQAT 600
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 166/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD+S ++ L F +G I
Sbjct: 62 TMNFDIIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K++E +NG + + YVG+ + ERE+EL
Sbjct: 118 SCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN G+ DE LK++F ++G ITS KVM G S+G GF
Sbjct: 177 --EKAKLFT-------NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGF 227
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A RA E+NGK +V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 228 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 277
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 267/588 (45%), Positives = 359/588 (61%), Gaps = 66/588 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----------------SQMRPVAMG---PSVPP---RM 340
KPLYVA+AQRKEER+A L Q+ +Q +P A G P+VP R
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 341 PMYPPG------PSGLGQQFLYGQA----PPAIIPPQAGFGYQQQLVPGMR---PAGAPM 387
P Y P P+ QQ Q P AI Q P +R P G+
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAI--------RQSGPRPALRHLAPTGSEC 472
Query: 388 PNFFV---PVVSQGQQGQRPGGRRGAGPVQ-QTQQPLPIMPHQMPPRGHAYRYPLGRNMQ 443
P+ QQG G + G P QT P + P Y+Y
Sbjct: 473 PDRLAMDFGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKY------- 525
Query: 444 DFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 503
+ P P P+ V P+TA + LA A P++Q+ +LGE L+P
Sbjct: 526 ------ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFP 577
Query: 504 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
L++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 578 LIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 267/588 (45%), Positives = 359/588 (61%), Gaps = 66/588 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----------------SQMRPVAMG---PSVPP---RM 340
KPLYVA+AQRKEER+A L Q+ +Q +P A G P+VP R
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 341 PMYPPG------PSGLGQQFLYGQA----PPAIIPPQAGFGYQQQLVPGMR---PAGAPM 387
P Y P P+ QQ Q P AI Q P +R P G+
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAI--------RQSGPRPALRHLAPTGSEC 472
Query: 388 PNFFV---PVVSQGQQGQRPGGRRGAGPVQ-QTQQPLPIMPHQMPPRGHAYRYPLGRNMQ 443
P+ QQG G + G P QT P + P Y+Y
Sbjct: 473 PDRLAMDFGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKY------- 525
Query: 444 DFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 503
+ P P P+ V P+TA + LA A P++Q+ +LGE L+P
Sbjct: 526 ------ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFP 577
Query: 504 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
L++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 578 LIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/590 (44%), Positives = 360/590 (61%), Gaps = 71/590 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD--MGAGIP-------------- 466
+ H P R DF GAG+ D G+P
Sbjct: 462 LRHLAPTGSEC----PDRLAMDFG---GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAA 514
Query: 467 ---------RRDASVGQPMPITA----------------LSTALANASPEQQRTLLGESL 501
+ +SV P P ++ LA A P++Q+ +LGE L
Sbjct: 515 AAPRAVAPYKYASSVRSPHPAIQPLQAQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERL 574
Query: 502 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 575 FPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 624
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/578 (44%), Positives = 364/578 (62%), Gaps = 56/578 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RAL+ +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALEGMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV FE +E+A +I+K+NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E +DE L+++F +YG ITS VM DG S+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +A LNGK+ + + YVG+AQKK+ER++ELK +FEQ E + ++QG+NLY+KN
Sbjct: 243 DAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 303 LDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG-------------PSVPPRMPMYP 344
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG P++PP Y
Sbjct: 362 TKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPAQRFYG 421
Query: 345 PGPSGLGQQFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
P + A PA+ P A Y P M+P P P + G
Sbjct: 422 PAQMTQIRPSPRWTAQPAVRPNAQSAASAY-----PNMQPPFRPAPRGPAQAALRSSMGA 476
Query: 403 RP-GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 461
RP G++G + PI+P P G+ Y NM++ P
Sbjct: 477 RPITGQQGVATAASIR--APIVPQSGRPAGYKYT----SNMRNPP--------------- 515
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
P+ + P+T +T LA A ++Q+ +LGE L+PL++++ D A K+TGMLL
Sbjct: 516 ---APQPAVHIQGQEPLT--TTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLL 570
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRS-VAQQQAN 558
E+D +E+LH+LE E+LKAKV EA+ VL++ A+QQA
Sbjct: 571 EIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQQAT 608
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FS+ G +LS ++ D + +S G+ +V F+ A+ A++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 GMNFDIIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K++E +NG + ++ YVG+ + ERE+EL
Sbjct: 127 SCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN G+ DE L+E+F ++G ITS KVM G S+G GF
Sbjct: 186 --EKAKLFT-------NVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A RA E+NGK +V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 286
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 269/592 (45%), Positives = 366/592 (61%), Gaps = 70/592 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK+ F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR--MPMYPPGPSGLGQQFL----Y 356
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + + P P G F+
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTLINQFQPAPGGY---FVPAVPQ 415
Query: 357 GQAPPAIIPPQAGFGYQQQLVPG------MRPAG-APMPN------------FFVPVVSQ 397
Q+ P P + Q+ PG RP G PMPN P +Q
Sbjct: 416 TQSRPTYYAP----NHMAQIRPGPRWQQTGRPQGFQPMPNTLRHSGPRQSLRHMPPSNAQ 471
Query: 398 GQQGQRPGGRRGAGPVQQTQ------QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 451
G +G PG + G TQ P +PP Y+Y
Sbjct: 472 GTRGI-PGVTQRVGVSSSTQTMGPRPPVSAPPPRAVPP----YKY--------------- 511
Query: 452 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD 511
+ P+PV P+ V P+TA + LA+A P++Q+ +LGE L+PL++ +
Sbjct: 512 -TRCPLPVVQPLQAPQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPS 568
Query: 512 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA A Q
Sbjct: 569 LAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQAKKDAAQ 617
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MHTATSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/611 (43%), Positives = 368/611 (60%), Gaps = 96/611 (15%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E D +LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P S + QF
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---------ASAILNQF-------- 401
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ------GQQGQRPGGRRGAGPVQQ 415
P AG GY VP + P P ++ P ++Q QQG RP G +G +
Sbjct: 402 --QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALR 454
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG------------- 462
P P + H + P G+A P R + +G+ + +D G
Sbjct: 455 QSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSC 510
Query: 463 --AGIP-----------------------RRDASVGQPMPITA----------------- 480
G+P + +SV P P
Sbjct: 511 QSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPL 570
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++
Sbjct: 571 TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRS 630
Query: 541 KVAEAMEVLRS 551
KV EA+ VL++
Sbjct: 631 KVDEAVAVLQA 641
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 72 MNFDVMKGKPIRIMWSQR 89
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/586 (45%), Positives = 362/586 (61%), Gaps = 52/586 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+S A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+
Sbjct: 68 ISPAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 127
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 128 FGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 186
Query: 124 T-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ K K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 187 AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK 246
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKN
Sbjct: 247 HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKN 306
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 307 LDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 365
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRKEER+A L Q+ M+ +A ++P + P+ G F+ P
Sbjct: 366 SKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPAA-GGYFM-----P 417
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
A+ Q+ Y P P P + QQG RP G +G + P P
Sbjct: 418 AVPQAQSRPTY---YAPNQMAQMRPNPRW--------QQGGRPQGFQGMPSALRQSGPRP 466
Query: 422 IMPHQMP------PRG------HAYRYPLGRNM------------QDFPFDMGAGSMLPV 457
+ H P RG A G+N+ P+ + P
Sbjct: 467 ALRHLAPAGTAPVSRGLPVSAQRAGVTTAGQNLAPRPPVAAPAPRAVPPYKYASSVRSPH 526
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 527 PPVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKIT 584
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA A Q
Sbjct: 585 GMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQAKKEAAQ 627
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/611 (43%), Positives = 367/611 (60%), Gaps = 96/611 (15%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E D +LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL+ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P S + QF
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---------ASAILNQF-------- 401
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ------GQQGQRPGGRRGAGPVQQ 415
P AG GY VP + P P ++ P ++Q QQG RP G +G +
Sbjct: 402 --QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALR 454
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG------------- 462
P P + H + P G+A P R + +G+ + +D G
Sbjct: 455 QSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSC 510
Query: 463 --AGIP-----------------------RRDASVGQPMPITA----------------- 480
G+P + +SV P P
Sbjct: 511 QSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPL 570
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++
Sbjct: 571 TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRS 630
Query: 541 KVAEAMEVLRS 551
KV EA+ VL++
Sbjct: 631 KVDEAVAVLQA 641
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN ++ KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVMKGKPIRIMWSQR 89
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/574 (44%), Positives = 358/574 (62%), Gaps = 37/574 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ LK IF +YG S VM D +GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +AV+ +NGK+ + + YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM D G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + P A
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG----YFMAAIPQA 416
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ---TQQP 419
+A + QL +RP+ P + V PG R + P Q T +P
Sbjct: 417 --QNRAAYYPTSQLA-QLRPS----PRWTTQGVRPQHFQNMPGTMRPSAPRPQTFSTMRP 469
Query: 420 LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR---------DA 470
+P M + A + +G A + VP A R
Sbjct: 470 ASQVPRMMSTQRVATQ-TMGPRPSTAAAAASAPPVRGVPQYKYAPSVRNPQQHMNTQPQV 528
Query: 471 SVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
++ QP P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+
Sbjct: 529 TMQQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEI 586
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 587 DNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 175/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DD+KLK++FS++G S +VM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G S+G GFV+F E+A RA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMK 284
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/580 (45%), Positives = 354/580 (61%), Gaps = 50/580 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMP-----MYPPGPSGLGQQ 353
KPLYVA+AQRKEER+A L Q+ Q MR + + P P P G+
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGR- 419
Query: 354 FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ-GQQGQRPGGRR---- 408
PP P Q Q+ P R P F + S Q G RP R
Sbjct: 420 ------PPYYTPNQLA-----QMRPNPRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPT 468
Query: 409 -------------GAGPVQQ----TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 451
GAG QQ + Q + P +P P+ +
Sbjct: 469 GSECPDRLAMDFGGAGAAQQGLTDSCQSGGV-PTAVPNLAPRATVAAAAPRAVAPYKYAS 527
Query: 452 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD 511
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + +
Sbjct: 528 NVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 512 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/568 (45%), Positives = 362/568 (63%), Gaps = 30/568 (5%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + ++ RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF++FGN+L
Sbjct: 63 RALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVL 122
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G+SKG+GFV +E E+A+ AI +NGML+NDK+V+VGH + ++ER++
Sbjct: 123 SCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEE 182
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K +F N++VKN+D T E+ ++F +G ITSAV+ D +GKS+ FGFVNF+ ++A
Sbjct: 183 MKNQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAH 242
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVEAL+ R+ +V +AQKK+ERE+EL+ +EQA E + K+QG+NLYIKNL D I
Sbjct: 243 AAVEALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDI 302
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L+ F FG ITS KVMRD GISKG GFV FS+P+EA++A+AEMN KMI +KPLY
Sbjct: 303 DDERLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLY 362
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP-MYPPGP----------SGLGQQFL 355
V++AQR+E RR +L++Q +Q + M + +P Y GP G + +
Sbjct: 363 VSLAQRREVRRQQLESQIAQRNQIRMQQAAATGIPGGYINGPMYYPPGPGAYPPPGGRGM 422
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
G P ++PP+ + Q VPGM P+P + Q G PG R P Q
Sbjct: 423 MGYGQPGMLPPRPRYAPNGQ-VPGM-----PLPTPYGQAPPQAYGGM-PGYPRAPRPPQA 475
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR----RDAS 471
+ P P P+ P G A R P G AG+ P G P+ R +
Sbjct: 476 GRAPPPTDPNAPPANGAAPR-PAGPQGAPAARPPPAGAQPPAARGPAPGRPQQQPPRGPA 534
Query: 472 VGQ-PMP----ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
GQ P P T + ALANASP +Q+ +LGE +Y + Q + + A K+TGMLLEMD T
Sbjct: 535 PGQGPAPGGEVPTITAAALANASPMEQKQMLGEVIYMKIVQSQPELAGKITGMLLEMDNT 594
Query: 527 EVLHLLESPEALKAKVAEAMEVLRSVAQ 554
E+LHLLE+P+++ KV EA+ VL +Q
Sbjct: 595 ELLHLLETPDSMNTKVNEALAVLHEFSQ 622
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 8 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 67
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 68 LNYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 111
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 112 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHI 171
Query: 312 RKEERRARLQA---QFSQMRPVAMGPSV 336
++ER+++++ QF+ + + P V
Sbjct: 172 SRKERQSKIEEMKNQFTNIYVKNVDPEV 199
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 271/592 (45%), Positives = 372/592 (62%), Gaps = 70/592 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +N+ PL K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +IDK+NGML+N K+VFVG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E +D+ L+++F +YG ITS VM DGKSK FGFV FE+
Sbjct: 183 ELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAV +LNGK+ + + +VG+AQKK+ER+QELK +FEQ E + ++QG+NLY+KN
Sbjct: 243 EAAEKAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
+ D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS+ EEA++A+ EMNG+++
Sbjct: 303 IDDNIDDERLRKEFTPFGTITSAKVMLE-DGRSKGFGFVCFSSAEEATKAVTEMNGRIVG 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
SKPLYVA+AQRKE+R+A L +Q+ Q +R +G P++ P G F+
Sbjct: 362 SKPLYVALAQRKEDRKAHLASQYMQKMANIRMQQIG------QPVFQPSSGGY---FV-- 410
Query: 358 QAPPAIIPPQAGFGYQQQ-----------LVPGMRPAGAPMPNFFVPVV------SQGQQ 400
P PPQ FG Q P RP G P P + Q
Sbjct: 411 --PTIPQPPQRFFGPAQMAQIRTATTRWPTQPQSRP-GTQQPQTAYPAIPGPFRPGPRPQ 467
Query: 401 GQRPGGRR-------GAGPVQQTQQPLPIMPHQMPP--------RGHAYRYPLGRNMQDF 445
+P R G GP+ QTQ P P P MPP R Y+Y NM++
Sbjct: 468 AAQPALRSISARPITGGGPM-QTQIP-PRAP--MPPTVSVNAAQRPTNYKYTA--NMRNP 521
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
P +G + P V + ++ P+T +T LA+A ++Q+ +LGE L+PL+
Sbjct: 522 PQTLGHVAHQP-QVQQAVHVQGQE-------PLT--TTMLADAPLQEQKQMLGERLFPLI 571
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ A K+TGMLLE+D +E+LH+LE E+LK+KV EA+ VL++ +QA
Sbjct: 572 SAMYSKLAGKITGMLLEIDNSELLHMLEHRESLKSKVEEAVAVLQAHEAKQA 623
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N + K + + +R+ K+ NVF+KNLD+S ++ + F +G I
Sbjct: 71 TMNYDPLKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + + +VGK + ERE+EL
Sbjct: 127 SCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELG- 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A + T N+Y+KN G+ D+ L+E+F ++G ITS KVM G SKG GF
Sbjct: 186 --EKAKRFT-------NVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF PE A +A+A +NGK IV KPL+V AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLK 286
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/580 (45%), Positives = 361/580 (62%), Gaps = 47/580 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG----NIFIKNLDKSIDHKALHDTFS 62
A RAL+ LNF + + +RIM+S RDPS+RKSG G NIFIKNLDKSID+KAL+DTFS
Sbjct: 65 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFS 124
Query: 63 SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ER
Sbjct: 125 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 183
Query: 123 ETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
E A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 184 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFE 243
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+K
Sbjct: 244 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 303
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 304 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 362
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQA 359
+KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 363 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 422
Query: 360 PPAIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRP 404
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 423 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVM 481
Query: 405 GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG 464
+R A QT P P A P R + + + G + P
Sbjct: 482 STQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNA 530
Query: 465 IPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
P+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 531 QPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 586
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 587 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 626
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 170/298 (57%), Gaps = 12/298 (4%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS +I D + +S G+ +V ++
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A++ LN +I + V + R + N+F+KNLD+S ++ L
Sbjct: 62 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYD 121
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 122 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 180
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 181 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 230
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 231 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 288
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 278/579 (48%), Positives = 359/579 (62%), Gaps = 68/579 (11%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD +NFT + RIM+S RDPS+RKSG GNIF+KNLD SID+KAL+DTFS
Sbjct: 96 VADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSL 155
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
FGNILSCK+A + +G SKG+G+V +E E+A AI K+NGMLI +VFVG F ++Q+R
Sbjct: 156 FGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDR 215
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFE 180
+ N +VKN+ TD DL K F +G + SAVVM+D ++ FGFVN+E
Sbjct: 216 PDA---DDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYE 272
Query: 181 NADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
+D A KAV+ALNGK + D E YVGKAQK+SERE+EL+ +FEQ E ++K+QG+
Sbjct: 273 ESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGV 332
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
NLY+KNL D + D++L+E F+E GTITS +VMRDP+G S+G GFV FSTPEEA++A+AEM
Sbjct: 333 NLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEM 392
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL 355
NGK+I KP+YVA+AQRKE RRA+L+AQ +Q R G V MPM GQ +
Sbjct: 393 NGKLISGKPVYVALAQRKEVRRAQLEAQHAQQR---AGMVVGRGMPM--------GQPPM 441
Query: 356 YGQAP-----PAIIPPQA--GFGYQQQLVP----------GMR------PAGAPMPNFFV 392
YG AP P +PPQA GF Y QQ++P G R P G PMP + +
Sbjct: 442 YGAAPMFYGQPGQLPPQARQGFMYPQQMMPRGVQRGPMPYGARVPGAPAPGGYPMPGYGM 501
Query: 393 PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 452
P+ Q Q +R G Q + R H R D P G
Sbjct: 502 PMQQQRGQPRRGRQGPGPQGPQGAPANRRNFKYTANARNHPAR--------DVP---PQG 550
Query: 453 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 512
M P AG P P+T S ALA ASPE Q+ ++GE LYPL+ + + +
Sbjct: 551 VMPPAAPVQNAG----------PEPLT--SAALAAASPEIQKNMIGERLYPLIHRQQPEL 598
Query: 513 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLEMD E+LHLLESPEAL+AK+ EAM VL +
Sbjct: 599 AGKITGMLLEMDNGELLHLLESPEALEAKIQEAMTVLEA 637
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 144/298 (48%), Gaps = 28/298 (9%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ ++ + L + F++ G + S ++ D + +S G+ +V F N A+ A+
Sbjct: 44 TASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERAL 103
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D +N I V + +R+ K+ N+FVKNLD S ++ L F +G I
Sbjct: 104 DTMNFTSIKG----VPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNI 159
Query: 159 TSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
S V + G SK +G+V++E A+ A +A+ +NG E +VG+ QK+ +R
Sbjct: 160 LSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDRP--- 216
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG--ISK 275
D N Y+KN+ D L + F FG + S VM+D + ++
Sbjct: 217 ------------DADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNR 264
Query: 276 GSGFVAFSTPEEASRALAEMNGKMI-----VSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV + + A +A+ +NGK + +YV AQ++ ER L+ +F Q++
Sbjct: 265 GFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLK 322
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ ++ + + L E+F+ G + S +V RD + S G +V F +A R
Sbjct: 42 FHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAER 101
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL MN I P + +QR R
Sbjct: 102 ALDTMNFTSIKGVPCRIMWSQRDPSLR 128
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/572 (44%), Positives = 360/572 (62%), Gaps = 45/572 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 54 SDAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV FE +E+A +I+K+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVAQDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E +DE L+ +F +YG ITS VM DG S+ FGFV FE+
Sbjct: 174 ELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDP 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +A LNGK+ + + YVG+AQKK+ER++ELK +FEQ E + ++QG+NLY+KN
Sbjct: 234 DAAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 294 LDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 352
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPR------MPMYPPGPSGLG 351
+KPLYVA+AQRKE+R+A L +Q+ Q MR MG P +P PP
Sbjct: 353 TKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGSAGGYFVPTIPPA----- 407
Query: 352 QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV--VSQGQQGQRPGGRRG 409
Q YG A + P + Q + P + A + PN P ++G G
Sbjct: 408 -QRFYGPAQITQMRPSQRWTAQPPVRPSTQTAASAYPNMQAPFRPTTRGPTQTALRTSLG 466
Query: 410 AGPV--QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
A P+ QQ P + + P G Y +++ P P+
Sbjct: 467 ARPITGQQGVAAAPSIRAPLVPSGRTAGYKYTSTVRNPP------------------APQ 508
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
+ P+TA + LA A ++Q+ +LGE L+PL++++ D A K+TGMLLE+D +E
Sbjct: 509 PAVHIQGQEPLTA--SMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSE 566
Query: 528 VLHLLESPEALKAKVAEAMEVLRS-VAQQQAN 558
+LH+LE E+LKAKV EA+ VL++ A+QQA
Sbjct: 567 LLHMLEHGESLKAKVDEAVAVLQAHQAKQQAT 598
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L I + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDT 62
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN MI +P+ + +QR
Sbjct: 63 MNFDMIKGRPIRIMWSQR 80
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/578 (44%), Positives = 359/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDP +RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 18 ADAERALDTMNFDVIKGKPVRIMWSQRDPPLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 77
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++V VG F ++ERE
Sbjct: 78 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVSVGRFKSRKEREA 136
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 137 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 196
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 197 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 256
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ MNG+++ +
Sbjct: 257 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTGMNGRIVAT 315
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 316 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 375
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 376 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 434
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 435 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 483
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 484 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 539
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 540 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 577
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/578 (45%), Positives = 359/578 (62%), Gaps = 46/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PALSVKVMTDESGKSKGFGFVSFERH 238
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 357
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 358 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 417
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 418 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 476
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 477 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 525
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 526 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 581
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 582 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 619
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 19/298 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+L FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDL---FGPALSVKVMTDE 223
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 281
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/569 (45%), Positives = 356/569 (62%), Gaps = 43/569 (7%)
Query: 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
+NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKF 131
D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 312 RKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAIIPP---- 366
RKEER+A L Q+ Q P P P PSG + Q A PP
Sbjct: 299 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 358
Query: 367 ----------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
Q + Q +PG +RPA AP P F + Q + +R A Q
Sbjct: 359 QLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRVANTSTQ 417
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
T P P A P R + + + G + P P+ ++ QP
Sbjct: 418 TMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ--VTMQQP 464
Query: 476 M-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 528
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+
Sbjct: 465 AVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 522
Query: 529 LHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 523 LHMLESPESLRSKVDEAVAVLQAHQAKEA 551
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/567 (45%), Positives = 357/567 (62%), Gaps = 73/567 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 50 ADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 109
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 110 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 168
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 169 ELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERH 228
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + R+ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 229 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 288
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D +DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 289 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 347
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP-PRMPMYPPGPSGLGQQFLYGQAPP 361
KPLYVA+AQRKEER+A L Q+ M+ +A +VP P + Y P P
Sbjct: 348 KPLYVALAQRKEERQAHLTNQY--MQRMATVRAVPNPVLNPYQPAP-------------- 391
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
P+G +F+ + Q Q R Q Q P
Sbjct: 392 --------------------PSG-----YFMAAIPQTQ------NRAAYYSANQLAQLRP 420
Query: 422 IMPHQMPPR--GHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 478
P R H+Y+Y G RN Q S V + A + + GQ P+
Sbjct: 421 -SPRWNDSRECAHSYKYAAGVRNPQQH-----MASQPQVAMQQPAVLVQ-----GQE-PL 468
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L
Sbjct: 469 TA--SMLASAPPQEQKQMLGERLFPLIQDVHPSLAGKITGMLLEIDNSELLHMLESPESL 526
Query: 539 KAKVAEAMEVLRS----VAQQQANNPA 561
++K+ EA+ VL++ A Q++ PA
Sbjct: 527 RSKMDEAVAVLQAHQAKEAAQKSTTPA 553
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/579 (45%), Positives = 364/579 (62%), Gaps = 48/579 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PALSVKVMTDESGKSKGFGFVSFERH 238
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 357
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQ 352
KPLYVA+AQRKEER+A L Q+ Q +R V P + P P P G P +
Sbjct: 358 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNR 416
Query: 353 QFLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPG 405
Y + A + P + Q Q +PG +RPA AP P F + Q +
Sbjct: 417 AAYYPPSQVAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMS 475
Query: 406 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 465
+R A QT P P A P R + + + G + P
Sbjct: 476 TQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQ 524
Query: 466 PRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
P+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 525 PQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 580
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
MLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 581 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 619
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 19/298 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+L FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDL---FGPALSVKVMTDE 223
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 281
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/578 (45%), Positives = 359/578 (62%), Gaps = 46/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PALSVKVMTDESGKSKGFGFVSFERH 238
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 357
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 358 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 417
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 418 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 476
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 477 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 525
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 526 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 581
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 582 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 619
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 19/298 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+L FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDL---FGPALSVKVMTDE 223
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 281
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/569 (45%), Positives = 356/569 (62%), Gaps = 43/569 (7%)
Query: 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
+NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKF 131
D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 312 RKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAIIPP---- 366
RKEER+A L Q+ Q P P P PSG + Q A PP
Sbjct: 299 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 358
Query: 367 ----------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
Q + Q +PG +RPA AP P F + Q + +R A Q
Sbjct: 359 QLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRVANTSTQ 417
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
T P P A P R + + + G + P P+ ++ QP
Sbjct: 418 TMGPRPAA-------AAAAATPAVRTVAQYKYAPGVRN----PQQHLNAQPQ--VTMQQP 464
Query: 476 M-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 528
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+
Sbjct: 465 AVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 522
Query: 529 LHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 523 LHMLESPESLRSKVDEAVAVLQAHQAKEA 551
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/594 (44%), Positives = 363/594 (61%), Gaps = 61/594 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RAL+ +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL DTFS+F
Sbjct: 63 ADAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G SKG+GFV FE +++A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D LK++FG++G S VM D G SK FGFVNFE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G +KG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRNKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGPSVPPRMPMYPPGPSGLGQQFL 355
KPLY+A+AQRKEER+A L Q+ Q +R V + P PP P +
Sbjct: 361 KPLYIALAQRKEERQAHLTNQYMQRMASIRAVPNPVLNPYQPPSGYFMTAIPQTQNRPAY 420
Query: 356 YGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNF--FVPVVSQGQQGQRPGG 406
Y + A + P + Q Q L +RPA A P F P+ SQ
Sbjct: 421 YPASQMAPLRPSPRWTSQGARPHPFQNLPGAIRPA-ASRPPFGSMRPMSSQ--------- 470
Query: 407 RRGAGPVQQ----TQQPLPIMPHQMPPR--------GHAYRYPLG-RNMQDFPFDMGAGS 453
RG G Q+ + Q L + P G Y+Y G RN Q
Sbjct: 471 LRGVGASQRIANSSTQALGLPPGASAGAAGAPGVRMGPQYKYAAGVRNPQQH-------- 522
Query: 454 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 513
V + A + + V P+TA + LA A P++Q+ +LGE L+PL++ + A
Sbjct: 523 ---VNIQPQARVQQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLA 577
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPAD 562
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ N AD
Sbjct: 578 GKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVKNAAD 631
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MHPSAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALETMNFDVIKGKPVRIMWSQR 89
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/589 (45%), Positives = 362/589 (61%), Gaps = 60/589 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTIINQFQPAA-GGYFM-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ Q+ Y P P P + QQG RP G +G + P P
Sbjct: 413 VPQAQSRPTY---YAPNQMAQMRPNPRW--------QQGGRPQGFQGMPNAMRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMG---AGSML------------------------ 455
+ H + P G A P R + +G AG L
Sbjct: 462 LRH-LAPAGTA---PASRGLPVSAQRVGVTTAGQSLAPRPPVAAPAPRAVPPYKYASSVR 517
Query: 456 -PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + A
Sbjct: 518 SPHPPVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA A Q
Sbjct: 576 KITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQAKKEAAQ 621
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/603 (43%), Positives = 361/603 (59%), Gaps = 83/603 (13%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+FGN
Sbjct: 61 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 120
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE +
Sbjct: 121 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 179
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E +D
Sbjct: 180 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHED 239
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D
Sbjct: 240 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 299
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+IDDEKL++ FS FG+IT +VM + G SKG GFV FS+PEEA++A+ EMNG+++ SKP
Sbjct: 300 TIDDEKLRKEFSPFGSITRAEVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 358
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
LYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA+
Sbjct: 359 LYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PAV- 409
Query: 365 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
PQA G P P P + QQG RP G +G + P P +
Sbjct: 410 -PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPTLR 459
Query: 425 HQMPPRGHAYRYPLGRNM----------------QDFPFDMGAGSMLPVPVDMGAGIP-- 466
H + P G+A P R + DF A L G G+P
Sbjct: 460 H-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGGVPTA 515
Query: 467 ---------------------RRDASVGQPMPIT-----------------ALSTALANA 488
+ +SV P P ++ LA A
Sbjct: 516 VQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIPPLQAPQPAVHVQGQEPLTASMLAAA 575
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ V
Sbjct: 576 PPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 635
Query: 549 LRS 551
L++
Sbjct: 636 LQA 638
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/576 (45%), Positives = 361/576 (62%), Gaps = 42/576 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG--QA- 359
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ QA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFVPAVPQAQ 417
Query: 360 --PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ-GQRPGGRR-------- 408
PP P Q Q+ P R P F + S +Q G RP R
Sbjct: 418 GRPPYYTPNQLA-----QMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGSEC 472
Query: 409 ---------GAGPVQQ----TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 455
GAG QQ + Q + P +P P+ +
Sbjct: 473 PDRLAMDFGGAGAAQQGLTDSCQSGGV-PTAVPNLAPRAAVAAAAPRAVAPYKYASSVRS 531
Query: 456 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K
Sbjct: 532 PHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGK 589
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 590 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/585 (44%), Positives = 361/585 (61%), Gaps = 45/585 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK+IF +YG S VM D GKSK FGFV+FE
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D +DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQ 352
KPLYVA+AQRKEER+A L +Q+ Q +R V P + P P P G P +
Sbjct: 361 KPLYVALAQRKEERQAHLTSQYMQRMASVRAVP-NPVLNPYQPAPPSGYFMAAIPQAQNR 419
Query: 353 QFLYGQAPPAIIPPQAGFG--------YQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP 404
Y + A + P + +Q +RP+ AP P F PV Q +
Sbjct: 420 AAYYPTSQLAQLRPSPRWATQGVRPQHFQNMPNAAVRPS-APRPQTFNPVRPASQVPRMM 478
Query: 405 GGRR-GAGPVQQTQQPLPIMPHQMPPRG-HAYRYPLG-RNMQDFPFDMGAGSMLPVPVDM 461
+R G+ + RG Y+Y G RN Q +P +
Sbjct: 479 TSQRMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPGVRNPQQ---------RMPTQPQV 529
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
P +P+ + L A A P++Q+ +LGE L+PL++ + A K+TGMLL
Sbjct: 530 PMQQPAVHVQGQEPLTASML----AAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLL 585
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
E+D +E+LH+LESPE+L++KV EA+ VL + AQ+ +PA
Sbjct: 586 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVPSPA 630
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE E+ + ++ N+YIKN G+ +DDEKLKE+F ++G S +VM D
Sbjct: 177 KEREAEMGARAKEF----------TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A RA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMK 284
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/574 (46%), Positives = 355/574 (61%), Gaps = 48/574 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEY-GTITSAVVMRDGDGKSKCFGFVNFEN 181
A +F NV++KN + DE L++ F +Y G S VM D GKSK FGFV+FE
Sbjct: 182 EFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFER 241
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA KAV+ +N K+ + R YVG+AQKK+ER+ ELK +FE +E + K+QG+NLY+KN
Sbjct: 242 HEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKN 301
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+I+DE+L + FS FGTITS KVM + G S+G GFV FS+PEEA++A+ EMNG++I
Sbjct: 302 LDDNINDERLWKEFSPFGTITSAKVMME-EGRSRGFGFVCFSSPEEATKAVTEMNGRIIG 360
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM---YPPGPSGL-------- 350
SKPLYVA+AQRKEER+ L +QF M+ +A +VPP + P SG
Sbjct: 361 SKPLYVALAQRKEERKMHLTSQF--MQRLAGMRAVPPSAIIGQYQPAAASGYFMAAMPQQ 418
Query: 351 --GQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR 408
G+ Y +P A + P + Q +RP GA F Q RP R
Sbjct: 419 AQGRTAYYTPSPMAPMRPNPRWPLQ------VRPQGAHAAGFQAITGPMRQPAPRPTQMR 472
Query: 409 GAGP--------VQQTQQPLPIMPHQMP-PRGH-AYRYPLG-RNMQDFPFDMGAGSMLPV 457
P Q P P P Q PR Y+Y RN Q P G G+M
Sbjct: 473 TVNPASVPQVPRASQGMMPRPTFPTQAAGPRALPGYKYTGSVRNPQQ-PGVQGPGAM--- 528
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
P+ + P+TA + LA A P +Q+ +LGE L+PL+ + A K+T
Sbjct: 529 -----QQAPQSAVHIQGQEPLTA--SMLAAAPPHEQKQMLGERLFPLIHGMYPTLAGKIT 581
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
GMLLE+D +E+LH+LESPE+L+AKV EA+ VL++
Sbjct: 582 GMLLEIDNSELLHMLESPESLRAKVEEAVAVLQA 615
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LYI +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 72 MNFDVVKGKPIRIMWSQR 89
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 268/604 (44%), Positives = 363/604 (60%), Gaps = 82/604 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV LNGK + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 243 DAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG+++
Sbjct: 303 LDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVG 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 360
SKPLYVA+AQRKE+R+A L +Q+ Q M V M +GQ F G A
Sbjct: 362 SKPLYVALAQRKEDRKAHLASQYMQRMANVRM---------------QQMGQIFQPGNAG 406
Query: 361 PAIIP----PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG--------------- 401
+P PQ +G Q P PN P G G
Sbjct: 407 SYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQTGNSGFASMQSAPFRAAPRA 466
Query: 402 --------------------QRPGG-----RRGAGPVQQTQQPLPIMPHQMPPRGHAYRY 436
Q GG R AGP + + P Q P + Y
Sbjct: 467 PAAQAGALRNSMSARPITGQQAVGGANMQSRSMAGPA------VGVSPGQSRPPNYKYT- 519
Query: 437 PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 496
NM++ P + + +P G + + GQ P+TA + LA A P++Q+ +
Sbjct: 520 ---ANMRNPP-----QTAMALPAPSGPSVQQAVHIQGQE-PLTA--SMLAAAPPQEQKQM 568
Query: 497 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 556
LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +Q
Sbjct: 569 LGERLFPLIQCMYPSLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQ 628
Query: 557 ANNP 560
A P
Sbjct: 629 AVAP 632
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKEL-- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 185 ------GEKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK I K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLK 286
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 266/602 (44%), Positives = 363/602 (60%), Gaps = 80/602 (13%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+FG
Sbjct: 107 NAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG 166
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 124
NILSCK+A D SG SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 167 NILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKE 226
Query: 125 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ K K F NV+VKN E T++ LK +F +YGTITS VM DGKS+ FGFV FE+ D
Sbjct: 227 LGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPD 286
Query: 184 DAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KNL
Sbjct: 287 AAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNL 346
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG+++ S
Sbjct: 347 DDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGS 405
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRKE+R+A L +Q+ Q +R MG PS G F+
Sbjct: 406 KPLYVALAQRKEDRKAHLASQYMQRMANVRMQQMGQIFQ---------PSNAGSYFV--- 453
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG----------------- 401
P + PQ +G Q P PN P G G
Sbjct: 454 --PTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNTQTGTSGFASMQAAPFRAAPRAPA 511
Query: 402 ------------------QRPGG-----RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPL 438
Q GG R AGP + + P Q P + Y
Sbjct: 512 AQAGALRNSMSARPITGQQAVGGANMQSRTMAGPA------VGVSPGQSRPSNYKYT--- 562
Query: 439 GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLG 498
NM++ P + + +P G + + GQ P+TA + LA A P++Q+ +LG
Sbjct: 563 -ANMRNPP-----QTAMAIPAPSGPSVQQAVHIQGQE-PLTA--SMLAAAPPQEQKQMLG 613
Query: 499 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 558
E L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 614 ERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHSESLKAKVEEAVAVLQAHQAKQAV 673
Query: 559 NP 560
P
Sbjct: 674 AP 675
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/604 (43%), Positives = 367/604 (60%), Gaps = 82/604 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSALRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG---------------AGIP- 466
+ H + P G+A P R + +G+ + +D G G+P
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPT 517
Query: 467 ----------------------RRDASVGQPMPITA----------------LSTALANA 488
+ ++V P P L+ ++ A
Sbjct: 518 AVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAA 577
Query: 489 SP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 547
+P ++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+
Sbjct: 578 APPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 637
Query: 548 VLRS 551
VL++
Sbjct: 638 VLQA 641
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/604 (43%), Positives = 367/604 (60%), Gaps = 82/604 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSALRQSGPRPA 461
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG---------------AGIP- 466
+ H + P G+A P R + +G+ + +D G G+P
Sbjct: 462 LRH-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPT 517
Query: 467 ----------------------RRDASVGQPMPITA----------------LSTALANA 488
+ ++V P P L+ ++ A
Sbjct: 518 AVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAA 577
Query: 489 SP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 547
+P ++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+
Sbjct: 578 APPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 637
Query: 548 VLRS 551
VL++
Sbjct: 638 VLQA 641
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/582 (44%), Positives = 361/582 (62%), Gaps = 60/582 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDPS+RKSG GN+FIKNLDKSID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
G+ILSCK+ TD +G +KG+GFV FE +E+A AI+K+NGML+N K+V+VG+F+ ++ER
Sbjct: 123 GHILSCKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLM 182
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + +F NVF+KNL E D L + G+YG+I SA +M D D KSK FGF++FE+
Sbjct: 183 QMGDHQKQFTNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFD-DSKSKGFGFISFEDH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A V+ +NG + + R Y G+AQKK+ER ELK +FE +E ++QG+NLYIKNL
Sbjct: 242 EAANDFVKTINGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS +GTITS KVM D SKG GFV FS+PEEA++A+ EMNG+++V+
Sbjct: 302 DDEIDDERLRKEFSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVA 361
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ-MRP---VAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRK+ERRA+L +Q+ Q + P V S P P+YP + Y
Sbjct: 362 KPLYVALAQRKDERRAQLASQYMQRVAPQVRVGQQASQQPVNPVYPT------MAYHYAA 415
Query: 359 APPA---IIPPQAGFGYQQQLVPGMRPAG---------APMPNF-FVPVVSQGQQGQRPG 405
P A I P AG QL P A PNF +P G G++ G
Sbjct: 416 MPQAQRNIFP--AG-----QLAQVRHPRWSQQPQQARTAAQPNFQTIP----GAAGRQFG 464
Query: 406 GRRGAGPVQQTQQPLPI--MPHQMPPRGH---AYRYPLGRNMQDFPFDMGAGSMLPVPVD 460
R Q +QP+P +P Q P G P + M+ +GAG+ L
Sbjct: 465 APRAGTATGQVRQPMPATRVPVQAAPAGQRVGGMGAPTQQQMR-----LGAGAQLSAAKQ 519
Query: 461 MGA-GIPRRDASVGQP---MPITAL---------STALANASPEQQRTLLGESLYPLVEQ 507
+PR+ P +P+ AL S LA+A P++Q+ +LGE L+ ++ +
Sbjct: 520 YPKFAVPRQGMPGQMPAENVPVQALHVPGQEPLTSAMLASALPQEQKQMLGERLFSIISE 579
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
+D A K+TGMLLE+D +E+LH+LE EAL+ KV EA++VL
Sbjct: 580 THKDLAGKITGMLLEIDNSELLHMLEVQEALEKKVEEAVQVL 621
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 158/288 (54%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FS+ G ILS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N + + + + +R+ K+ NVF+KNLD+S ++ + F +G I S
Sbjct: 72 MNFDTLKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G +K +GFV+FE + A KA+E +NG + ++ YVG + ER ++ G
Sbjct: 128 CKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQM-GD 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
++ Q N++IKNL + +DD KL E ++G+I S K+M D S SKG GF+
Sbjct: 187 HQK---------QFTNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFDDSK-SKGFGFI 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F E A+ + +NG + + LY AQ+K ER A L+A+F ++
Sbjct: 237 SFEDHEAANDFVKTINGSEVNGRTLYAGRAQKKAERAAELKARFEALK 284
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 266/610 (43%), Positives = 354/610 (58%), Gaps = 94/610 (15%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RAL+ LN++ + NK+ RIM+S RDPS+RK+G GNIFIKNLD++ID+KALHDTF++F
Sbjct: 109 ADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAF 168
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+A D +G SKG+GFV + ESA+ AI +NGM +NDK VFVG + ++ER+
Sbjct: 169 GDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQA 228
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
++ F N+++KNL T E+L ++F +YG +TSA V D GK + FGFVN+EN
Sbjct: 229 KIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENH 288
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A+KAVEAL+ K + YV +AQK+ ER+ EL+ EQ ET K+QG+NLYIKNL
Sbjct: 289 ESASKAVEALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNL 348
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D DDEKL+ F FGTITSCKVM+D G+S+G GFV FS P+EA++A+AEMNGKM+ S
Sbjct: 349 DDEYDDEKLQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGS 408
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ---MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
KPLYV++AQRK+ R+ +L+AQ SQ MR + + P P P Q YG A
Sbjct: 409 KPLYVSLAQRKDVRKQQLEAQMSQRAQMRSQQIAAAGIPGAPYGAPP-----NQMYYGGA 463
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
A PP G Y P PAG P RP R A P Q
Sbjct: 464 A-AYPPPGRGMAYP----PNGMPAGMP---------------PRP---RYAPPGQMPPMG 500
Query: 420 LPIMPHQMPPRGHAYRYPLGRNM---QDFPFDMG-----------AGSM----------- 454
+P PH PP+G+ YP G D + G AGSM
Sbjct: 501 MPGAPHYQPPQGYP-GYPAGDPAFPGADHAYPAGDPGYPAGGPAPAGSMRGMPGPPGGPA 559
Query: 455 -------------------LPVPVDMGAGIPR-RDASVGQP--------------MPITA 480
+P M P+ RD + QP P T
Sbjct: 560 PAGFRGPGGPNGPPIGRNGMPPAGGMRGAPPQSRDPAYHQPSTLSGRATSHRAPEAPQTG 619
Query: 481 LS-TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 539
LS ALA ASP +Q+ +LGE+LYP + + + + A K+TGM+LE+D E+LHLLE+ AL
Sbjct: 620 LSPAALAKASPAEQKQMLGEALYPQIAEKQPEKAGKITGMILEIDNAELLHLLENTTALD 679
Query: 540 AKVAEAMEVL 549
AKV+EA++VL
Sbjct: 680 AKVSEAVQVL 689
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 106/200 (53%), Gaps = 20/200 (10%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 190
+++V LD + T+ L +IF G ++S V RD +S + +VN+ NA DA +A+E
Sbjct: 57 TSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALE 116
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN ++ + +Q+ + +G N++IKNL ++ID++
Sbjct: 117 QLNYSLIKNKACRIMWSQRDPSLRKTGQG----------------NIFIKNLDETIDNKA 160
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + F+ FG I SCKV D +G SKG GFV + T E A A+ +NG + K ++V +
Sbjct: 161 LHDTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIH 220
Query: 311 QRKEERRARL---QAQFSQM 327
+ ER+A++ +A F+ +
Sbjct: 221 VPRRERQAKIDEVRAHFTNL 240
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 272/609 (44%), Positives = 363/609 (59%), Gaps = 88/609 (14%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV FE +ESA +I+K+NGML+N K+VFVG F+ ++ERE
Sbjct: 114 GNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN + TDE LK++F +YGTITS VM + KS+ FGFV FEN
Sbjct: 174 ELGEKAKLFTNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIK-ENKSRGFGFVAFENP 232
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ LNGK+ D + YVG+AQKK+ER+ ELK +FEQ E + ++QG+NLY+KN
Sbjct: 233 ESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKN 292
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ FS FGTITS KVM + G SKG GFV FS EEA++A+ EMNG+++
Sbjct: 293 LDDSIDDERLRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVG 351
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
SKPLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG +G G
Sbjct: 352 SKPLYVALAQRKEDRKAHLASQYMQRMANMRMQHMG-------QIFQPGGNG-------G 397
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFF---------------------VPVVS 396
P I PQ FG Q V +R P +F + +
Sbjct: 398 YYVPTIPQPQRFFGKQ---VSQIRTT----PGWFRANAANQNAVAANAAGGAYPAMAAAT 450
Query: 397 QGQQGQRPGGRRG--------------------AGPVQQTQ-----QPLPIMPHQMPPRG 431
G Q ++ G RG A P+ Q Q P+ P +
Sbjct: 451 AGNQYRQAGNVRGQQQQAPNAQAQAASAAMRNSARPITGQQAGGNMQTRPVAPQMAANQA 510
Query: 432 HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE 491
A Y +NM++ P A PV ++ V P+TA T LA A P
Sbjct: 511 RAANYKYTQNMRNPPAQPVAIPTQPV--------AQQAVHVKGQEPLTA--TMLAAAQPA 560
Query: 492 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+Q+ +LGE L+PL+E + A K+TGMLLE+D +E++H+LE E+LKAKV EA+ VL
Sbjct: 561 EQKQMLGERLFPLIEPMYPSIAGKITGMLLEIDNSELVHMLEHSESLKAKVDEAVAVLH- 619
Query: 552 VAQQQANNP 560
A QQ P
Sbjct: 620 -AHQQKTQP 627
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 166/290 (57%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 62 TMNFDLIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A ++E +NG + ++ +VG+ + ERE+EL
Sbjct: 118 SCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN GD + DE LKE+F ++GTITS +VM + S+G GF
Sbjct: 177 --EKAKLFT-------NVYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENK-SRGFGF 226
Query: 280 VAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF PE A A+ E+NGK + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 227 VAFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLK 276
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/583 (44%), Positives = 360/583 (61%), Gaps = 47/583 (8%)
Query: 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
+NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKF 131
D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP YVA+AQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQ 298
Query: 312 RKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAIIPP---- 366
RKEER+A L Q Q P P P PSG + Q A PP
Sbjct: 299 RKEERQAHLTNQHMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 358
Query: 367 ----------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
Q + Q +PG +RPA AP P F + Q + +R A Q
Sbjct: 359 QLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRVANTSTQ 417
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
T P P A P R + + + G + P P+ ++ QP
Sbjct: 418 TMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ--VTMQQP 464
Query: 476 M-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 528
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+
Sbjct: 465 AVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 522
Query: 529 LHLLESPEALKAKVAEAMEVLRS----VAQQQANNPADQLASL 567
LH+LESPE+L++KV EA+ VL++ A Q+A N A + S+
Sbjct: 523 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSAAGVPSV 565
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/583 (44%), Positives = 355/583 (60%), Gaps = 49/583 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G S+G+GFV FE ++A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK+IF ++G TS VM D G + FGFV+FEN
Sbjct: 182 ELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + R +VG+AQKK ER+ ELK +FEQ ++ ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q A + P P P PSG + Q+
Sbjct: 361 KPLYVALAQRKEERQAHLITQYMQRVANARAAANPVMNPYQPAPPSGFIMTAIPQAQSRS 420
Query: 362 AIIPPQAGFGYQQQLVPG-------------------MRPAGAPMPNFFVPVVSQGQQGQ 402
A P G QL PG MRP P P F V + Q
Sbjct: 421 AYYPTA---GQMAQLRPGPRWTTQSVRPQHFQNMPGVMRPP-RPRPQNFSTVRASSQVPP 476
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDM 461
+R A + P+ + G Y+Y G RN Q ++ P
Sbjct: 477 MMNTQRVAAQSSGPRHPVATAATHVRG-GPQYKYSTGVRNPQQHVATQPQVTLQPA---- 531
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
+ P+TA + LA A ++Q+ +LGE L+PL++ + A K+TGMLL
Sbjct: 532 --------VHIQGQEPLTA--SMLAAAPLQEQKQMLGERLFPLIQNMHPSLAGKITGMLL 581
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANN 559
E+D +E+LH+LESPE+L++KV EA+ VL + VAQ+ A N
Sbjct: 582 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEVAQKPATN 624
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I +P+ + +QR
Sbjct: 72 MNFDVIKGQPVRIMWSQR 89
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/582 (45%), Positives = 362/582 (62%), Gaps = 64/582 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA+D +N+ P+ + RIM+S RDP++R+SG GNIFIKNLDK+ID+K L+D FS+F
Sbjct: 63 ADAERAIDTMNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-E 123
GNILSCKIA D S+G+GFV +E KE+A AI K+NGM++NDK+VFVG F+ K+ER E
Sbjct: 123 GNILSCKIAVDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLE 182
Query: 124 TVAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + K F NVFVKN +S +E LK++FG++G ITS VVM + GKSK FGFV FE
Sbjct: 183 KLGDQAKKFKNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAES-GKSKGFGFVAFEAP 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A AV LNG + + R+ V +AQKK+ER ELK +FE E ++++QG+NLYIKNL
Sbjct: 242 EAAEAAVNELNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D +DDE+L+ FS +GTITS KVM+D GISKG GFV FS+P+EA++A+ EMNG+++V+
Sbjct: 302 EDGLDDERLRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILVT 361
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG------------------PSVPP-R 339
KPLYVA+AQRKEERRA+L QF Q +R A G P+VP +
Sbjct: 362 KPLYVALAQRKEERRAQLSTQFLQRVNPLRYNASGTMPQAGYSFQAGQPGFYIPTVPTNQ 421
Query: 340 MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG-YQQQLVPGMRPAGAPMPNFFVPVVSQG 398
P + + + QAP IP + + Q+ G P P P
Sbjct: 422 RPFITQSVNQITRPRWQSQAPVQQIPANTQYASHVTQIRAGAAP---PRPR--------- 469
Query: 399 QQGQRPGGRRGAGPVQ-------QTQQPLPIMPH--QMPPRGHAYRY-PLGRNMQDFPFD 448
QG RR P Q Q +PI P+ + + AY+Y P RN +P
Sbjct: 470 HQGAPNVARREPAPYQPGMGTRTMPSQQVPIRPNVPAVAQQRTAYKYNPNTRN--QYP-- 525
Query: 449 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 508
AG M+ G P + A++ Q P ST LA A+P +Q+ ++GE L+PLV++
Sbjct: 526 --AGQMI--------GQPDQAAAIIQG-PDQLTSTILATATPTEQKQMIGERLFPLVQEF 574
Query: 509 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
+ A K+TGMLLE+D +E+LH+LES + L+AKV EA++VL+
Sbjct: 575 QPHLAGKITGMLLEIDNSELLHMLESRDLLRAKVEEAVQVLQ 616
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M+ T + +LY+ +L + + L E FS+ G + S +V RD + S G +V F
Sbjct: 1 MQSTTQNYPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RA+ MN I +P + +QR
Sbjct: 61 QPADAERAIDTMNYDPIKGRPCRIMWSQR 89
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/607 (44%), Positives = 354/607 (58%), Gaps = 85/607 (14%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + +K IRIM+S RDPS+R+SG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLIRDKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD G SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E DE LK+ F YG ITS VM DGKSK FGFV +E
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETT 233
Query: 183 DDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK D + YV +AQKK+ER+QELK +FE+ K+ + G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ FS +GTITS KVM D G SKG GFV F +P EA+ A+ E+NG++I
Sbjct: 294 LDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRKEER+A L +Q+ MR + G + ++PP +G G P
Sbjct: 354 SKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLGQLFPPNTAG-------GFFVP 403
Query: 362 AIIPPQAGFG-------------YQQQLVPGMRPAGA--------------------PMP 388
+ P Q FG QQQ MRPA A
Sbjct: 404 TMTPSQRFFGPQITTPMRSTPRWAQQQ----MRPATAVQSVQAGAASAAGAAAVGGFQGA 459
Query: 389 NFFVPVVSQGQQGQRPGGRRGAGP-VQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF 447
VP Q Q G RG P VQ T R R G+
Sbjct: 460 AGAVPT----QFRQSGAGARGTQPQVQGTHAAAAAAAAANNMRSSGARAITGQQ------ 509
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASV----------------GQPMPI--------TALST 483
+ A +M + G +R AS QP+P +++
Sbjct: 510 SVAAPNMQIAGAQIAGGAQQRAASYKYTSNMRNPPVQQMQQAQPLPSQLQGKNQEKLIAS 569
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
LANA P++Q+ +LGE LYP++E++ A K+TGMLLE++ +E+LH+LE EALKAKV
Sbjct: 570 LLANAKPQEQKQILGERLYPMIERMHATLAGKITGMLLEIENSELLHMLEDQEALKAKVE 629
Query: 544 EAMEVLR 550
EA+ VL+
Sbjct: 630 EAVAVLQ 636
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 165/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + I+ L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI DK + + +R+ ++ NVF+KNLD++ ++ + F +G I
Sbjct: 62 TMNFDLIRDKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VA+ T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQQELKRKFEELK 277
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/580 (44%), Positives = 353/580 (60%), Gaps = 49/580 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + DE LK++FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP- 361
KPLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PP
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPA 414
Query: 362 ----AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQ 402
A PP Q + Q +PG +RP P F + Q +
Sbjct: 415 QNRAAYYPPGQIAQLSPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPR 474
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----YRYPLG-RNMQDFPFDMGAGSMLPV 457
+R A QT P P Y+Y G RN Q P
Sbjct: 475 VMSAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNTQPQVAMQQPA 534
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
G +P+ + L+ A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 535 VHVQGQ----------EPLTASMLAAA----PPQEQKQMLGERLFPLIQAMHPTLAGKIT 580
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN GD ++DE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G SKG GFV+F E+A +A+ EMNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 266/642 (41%), Positives = 358/642 (55%), Gaps = 114/642 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 98 RALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D DE+ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQ 277
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 278 AAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDV 337
Query: 247 DDEKLKELFSEFGTITSCKVMRD------------------------------------- 269
DD+KL+ELF +GTITS KVMRD
Sbjct: 338 DDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKE 397
Query: 270 --------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+
Sbjct: 398 KEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 457
Query: 316 RRARLQAQFSQMRPV--------------AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
RR++L+A + M P+V Y PG G F+ G
Sbjct: 458 RRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV-----FYGPGQQG----FIPGAQRG 508
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---Q 418
+ PPQ G PG P P P GQQG RG GP QQ Q
Sbjct: 509 GMFPPQPGMMMGMPGRPGQYP--GPFP---------GQQGG-----RGVGPNQQIPPNFQ 552
Query: 419 PLPIMPHQMPPRGHAYRYPL---------------GRNMQDFPFDMGAGSMLPVPVDMGA 463
LP+ Q P + YP+ G G +P+ M
Sbjct: 553 GLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRP 612
Query: 464 GIPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
G R +VGQP P T + + AL+ A P+QQ+ +LGE+LYP ++ + + A K+TGM
Sbjct: 613 GQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGM 672
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
LLEMD TE+L LLE EAL+AKV EA+ V + +++ PA
Sbjct: 673 LLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 21/318 (6%)
Query: 15 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
N TP N + + + + + ++++ LD S+ L++ FSS G + S ++
Sbjct: 16 NGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 75 DG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 133
D + +S G+ +V + + + A+D+LN LI K + +R+ KT N
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTGQGN 131
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
VF+KNLD + ++ L F +G I S V +D G SK +GFV++E A+ A A++ +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 194 GKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G +D++ +VG K +R+ +E+K F N+YIKN+ ++DE+
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVEDEE 238
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
++LF +FG ITS + RD G S+G GFV FST E A A+ EMN K + S+ LYV A
Sbjct: 239 FRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 311 QRKEERRARLQAQFSQMR 328
Q+K ER L+ Q+ R
Sbjct: 299 QKKHEREEELRKQYEAAR 316
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/586 (44%), Positives = 355/586 (60%), Gaps = 47/586 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + +E L+ +F +YG S VM D GKS+ FGFV+FE
Sbjct: 182 ELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMTAIPQAQNRG 420
Query: 362 AIIPPQAGFGYQQQLVPGMR-PAGAPMPNFF----VPVVSQGQQGQRPGGRRGAGPVQQT 416
A P G QL P R P P F + S G + Q G R + + +
Sbjct: 421 AYYP---AAGQMAQLRPSPRWPTQGVRPQHFQNMQSAMRSSGPRPQMFGSMRPSSQLPRM 477
Query: 417 QQPLPIMPHQMPPRGHA---------------YRYPLG-RNMQDFPFDMGAGSMLPVPVD 460
+ M PR Y+Y G RN Q + V V
Sbjct: 478 TANQRVATQAMGPRTATTATSITANSVRGVSQYKYATGVRNTQQH-----VNAQPQVTVQ 532
Query: 461 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
A + + GQ P+T +T LA A +Q+ +LGE L+PL++ + A K+TGML
Sbjct: 533 QPAVVVQ-----GQE-PLT--TTMLAAAPLHEQKQMLGERLFPLIQAMHLSLAGKITGML 584
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
LE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ N A
Sbjct: 585 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVTNSA 630
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 175/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + + N+YIKN GD +D+EKL+++F+++G S +VM D
Sbjct: 177 KEREAELGARAREF----------TNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG S+G GFV+F E+A +A+ EMNGK + KP+YV AQ+K ER+A L+ +F QM+
Sbjct: 227 SGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMK 284
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/580 (44%), Positives = 353/580 (60%), Gaps = 49/580 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + DE LK++FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP- 361
KPLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PP
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPA 414
Query: 362 ----AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQ 402
A PP Q + Q +PG +RP P F + Q +
Sbjct: 415 QNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPR 474
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----YRYPLG-RNMQDFPFDMGAGSMLPV 457
+R A QT P P Y+Y G RN Q P
Sbjct: 475 VMSAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNTQPQVAMQQPA 534
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
G +P+ + L+ A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 535 VHVQGQ----------EPLTASMLAAA----PPQEQKQMLGERLFPLIQAMHPTLAGKIT 580
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN GD ++DE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G SKG GFV+F E+A +A+ EMNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/601 (43%), Positives = 362/601 (60%), Gaps = 70/601 (11%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD LN++ + K RIM+S RDP +RK+G GNIFIKNLD+ ID+KALHDTF++FG +L
Sbjct: 130 RALDQLNYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVL 189
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD SG SKG+GFV +++ E+A+ AI +NGML+NDK+VFVG + ++ER++
Sbjct: 190 SCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDE 249
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K+ F N++VKNLD +E+ + +F ++G ITSAV+ +D +G SK FGFVNFEN +DA
Sbjct: 250 MKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQ 309
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE L+ K+ + +VG+AQKKSERE+EL+ Q+EQA E K+QG NLYIKNL D +
Sbjct: 310 RAVEELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDV 369
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ F FGTITSCKVMRD G SKG GFV FS+P+EA+RA++EMN K++ +KPLY
Sbjct: 370 DDEKLRAEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLY 429
Query: 307 VAVAQRKEERRARLQAQFSQMRP---VAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
VA+AQRK+ R+ +L++Q +Q +A + P MP YG AP
Sbjct: 430 VALAQRKDVRKQQLESQIAQRNNQLRLAAAQGI-PNMP--------------YGAAPMFY 474
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVP---VVSQGQQGQRPGGRRGAGPVQQTQQPL 420
P AG+ Q+ V G PA P + P + G Q+P
Sbjct: 475 QPAAAGYPPGQRPVMGYPPAPGPARMRYAPGQQMAGMAVPPPYGQPPVPYGMGTPYQRPR 534
Query: 421 PI--------------MPHQMPPRGHAYRYPLGRNMQDFPFD------MGAGSMLPVPVD 460
P+ +P PRG + G N P GAG+ P P
Sbjct: 535 PVRQPGGPGGPGAPAPVPLSSAPRGPSAPVVTGGNGTRLPMAGPGGPVTGAGAGRPAPTP 594
Query: 461 MGAGIPR--------------RDASVGQPMPITALST-------ALANASPEQQRTLLGE 499
G+P+ R+A+ +ST LANAS +Q+ +LGE
Sbjct: 595 --NGVPQNGGQAQAYKLNPNTRNATTTGQATTGPVSTEPPINAALLANASAGEQKQILGE 652
Query: 500 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL----RSVAQQ 555
++Y + ++ + A K+TGMLLEM+ TE++HL+E+P+AL+ KVAEA+ VL ++ QQ
Sbjct: 653 AIYMKIHAMQPELAGKITGMLLEMETTELIHLIETPDALQNKVAEAITVLEEFSKNAEQQ 712
Query: 556 Q 556
Q
Sbjct: 713 Q 713
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 157/291 (53%), Gaps = 21/291 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ LD + L + F+ G + S ++ D + +S G+ +V + N + A+D+
Sbjct: 75 SLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQ 134
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN I K + +R+ KT N+F+KNLD+ ++ L F +GT+ S
Sbjct: 135 LNYSQIRGKPCRI----MWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLS 190
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---EL 217
V D G SK +GFV++++ + A A++A+NG +D++ +VG+ + ER+ E+
Sbjct: 191 CKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEM 250
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
K F NLY+KNL + +E+ + LFS+FG ITS + +D G SKG
Sbjct: 251 KSHF-------------TNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGF 297
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV F E+A RA+ E++ K I KP++V AQ+K ER L+ Q+ Q +
Sbjct: 298 GFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQAK 348
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALA 293
++LY+ L + + L E+F+ G + S +V RD + S G +V + + RAL
Sbjct: 74 VSLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALD 133
Query: 294 EMNGKMIVSKPLYVAVAQR 312
++N I KP + +QR
Sbjct: 134 QLNYSQIRGKPCRIMWSQR 152
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/583 (44%), Positives = 350/583 (60%), Gaps = 64/583 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----------------SQMRPVAMG---PSVPPRMP-- 341
KPLYVA+AQRKEER+A L Q+ +Q +P A G P+VP P
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQPGPWS 420
Query: 342 ---------MYPPG----PSGLGQQ----FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG 384
+ PPG PS + Q L AP P G Q V G
Sbjct: 421 ASLVSDEQCLSPPGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRV------G 474
Query: 385 APMPNFFV---PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRN 441
+ P+ QQG + G G Q P P Y +
Sbjct: 475 SECPDRLAMDFGGAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAPAPRAVAPYKYASS 534
Query: 442 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 501
++ P P P+ V P+TA + LA A P++Q+ +LGE L
Sbjct: 535 VRS-----------PHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERL 581
Query: 502 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV+E
Sbjct: 582 FPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVSE 624
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQR 89
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/373 (60%), Positives = 282/373 (75%), Gaps = 10/373 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AARA+DVLNF +N K IRIMYS RDP++RKSG GNIFIKNLDK ID+KAL+DTFS F
Sbjct: 72 ADAARAIDVLNFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQF 131
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNI+S K+A DG G SKG+GFVQF +E+AQ AIDK+NGML+NDKQV+VG F R+ ER
Sbjct: 132 GNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGERG- 190
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
T FNNV+VKNL ES ++ LK++FG G +TS V+M+DG+GKSK FGFV FE ++
Sbjct: 191 -GGPTTFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEA 249
Query: 185 AAKAVEALNG-KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A++AVE L+G K +D+ W V +AQKK+ERE ELK +F+ +E ++K G NLYIKNL
Sbjct: 250 ASEAVEKLDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLE 309
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D++DD KL+ELF+EFGTITSC+VMRD SG S+GS FVAFS+ +EA+RA+ EMNGKM +K
Sbjct: 310 DTVDDAKLRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMNGKMAGTK 369
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRKE+RR RLQAQF+Q R VA G M PPG G YGQ PP +
Sbjct: 370 PLYVALAQRKEDRRMRLQAQFAQ-RAVANGGMPGMPYGMPPPGVPG---AMYYGQPPPGV 425
Query: 364 I---PPQAGFGYQ 373
+ PQ GFG+Q
Sbjct: 426 MGPPQPQPGFGFQ 438
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 160/289 (55%), Gaps = 20/289 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
+++ +LD + L++ FS+ G ++S ++ D + +S G+ +V F+ A AID
Sbjct: 21 SLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAIDV 80
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN ++N K + + + +R+ K+ N+F+KNLD+ ++ L F ++G I S
Sbjct: 81 LNFNVVNGKPIRIMY----SQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVS 136
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
A V DG G SK +GFV F + A +A++ +NG +D++ YVG Q++ ER
Sbjct: 137 AKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGER------- 189
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
T + N+Y+KNL +S+D++KLKE+F G +TS +M+D G SKG GFV
Sbjct: 190 --GGGPTTFN-----NVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFV 242
Query: 281 AFSTPEEASRALAEMNG-KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F E AS A+ +++G I K V AQ+K ER A L+A+F R
Sbjct: 243 CFEESEAASEAVEKLDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAER 291
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/581 (44%), Positives = 355/581 (61%), Gaps = 52/581 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK+IF +YG S VM D GKS+ FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NG + + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV----PPRMPMYPPGPSGLGQQF 354
KPLYVA+AQRKEER+A L Q+ Q MR + + P P P +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT 420
Query: 355 LYGQAPPAIIPPQAGFGYQQQL-------VPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
Y A + P + Q +P P N S QG R GG
Sbjct: 421 YYAPNQLAQMRPNPRWQQQGGRSQGGFQAMPSSLRQPGPRANLRHMSPSSSTQGPRAGG- 479
Query: 408 RGAGPVQQTQQPLPIM----PHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMG 462
Q+ P P + P MPP Y+Y G RN + P+ +
Sbjct: 480 -------QSMGPRPSVGVSGPRAMPP----YKYATGVRN---------PNPQVVQPIALQ 519
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
P V P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE
Sbjct: 520 QTQP--AVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLE 575
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
+D +E+LH+LES E+L++KV EA+ VL++ QA A Q
Sbjct: 576 IDNSELLHMLESHESLRSKVEEAVAVLQA---HQAKKDATQ 613
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L I + L E FS G + S +V RD + S G +V FS P +A RAL
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 72 MNFDVVKGKPIRIMWSQR 89
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/580 (44%), Positives = 348/580 (60%), Gaps = 49/580 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF PL N+ +RIM+S RDPS+RKSG GN+FIKNL K ID+KA+ DTFS+FGN
Sbjct: 65 AERALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE-TV 125
ILSC++ATD G S+G+GFV FE +E+A AI+K+NGML+N+K+VFVG F+ + ERE +
Sbjct: 125 ILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRSERERMM 184
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K + F NV+VKN E D LK++F YG ITSA VM D GKS+ FGFV+FEN D+
Sbjct: 185 GDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDN 244
Query: 185 AAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A +AV+ LN K+ + ++ YVG+AQKK+ER +LK +FEQ E + ++QG+NLY+KNL
Sbjct: 245 AEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLD 304
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L+ F+ +GTITS KVM D +G SKG GFV FS+PEEA++A+ EMNG++IV
Sbjct: 305 DVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQ 364
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP-PRMPMYPPGPSGL-------GQQF 354
KPLYVA+AQRKE+RRA L +QF Q G VP +MP P+ + F
Sbjct: 365 KPLYVALAQRKEDRRAHLSSQFVQR---FTGVRVPFGQMPFNHSTPTSFIVPASMHPRAF 421
Query: 355 LYGQAPPAIIPPQAGFGYQQQLVPGMRPAG---------------APMPNFFVPVVSQGQ 399
+ PQ G QQ V G AP P
Sbjct: 422 FASGNVANNVRPQRWAGGQQIRVSGQYAMAGGAPMATAAAANFQRAPRPTM--------- 472
Query: 400 QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQD-------FPFDMGAG 452
QGQ G + +P+ H G R +G Q F F
Sbjct: 473 QGQNAGVAAARNATMSSTRPITSTIHGAAGSGTQSRNRVGVAPQQAPNSRPTFKFTNSVR 532
Query: 453 SMLPVPVDMGAGIPRRDASVGQPM-PITALSTALANASPEQQRTLLGESLYPLVEQLERD 511
+ P A + +A + Q P+T + LA A P Q+ +LGE L+PL+ + D
Sbjct: 533 NAQPSTPAGAAPMNASNAVLVQGQEPLT--TQMLAEACPRDQKQMLGERLFPLIYAMHAD 590
Query: 512 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLE+D +E+LH+LE E+L+AKV EA+ VL++
Sbjct: 591 LAGKITGMLLEIDNSELLHMLEHSESLRAKVEEAVAVLQA 630
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 165/298 (55%), Gaps = 21/298 (7%)
Query: 38 SGTGN-----IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
SG GN +++ +LD + L + F G +LS ++ D S +S G+ +V F
Sbjct: 3 SGGGNYTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQP 62
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
A+ A+D +N + ++ + + +R+ K+ NVF+KNL + ++ +
Sbjct: 63 GDAERALDTMNFEPLKNRPMRIMW----SQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDT 118
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V D G S+ +GFV+FE + A +A+ +NG ++++ +VGK +S
Sbjct: 119 FSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRS 178
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 271
ER E+ M + F N+Y+KN G+ +DD KLKE+F +G ITS +VM D +
Sbjct: 179 ER--------ERMMGDKARLF--TNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQT 228
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
G S+G GFV+F P+ A +A+ E+N K + + K +YV AQ+K ER + L+ +F Q++
Sbjct: 229 GKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLK 286
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/558 (45%), Positives = 349/558 (62%), Gaps = 44/558 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +N+ P+ + RIM+S RDPS+R+SG GNIFIKNLDKSIDHKAL+DTFS+F
Sbjct: 67 ADAERALDTMNYEPIKGQPCRIMWSQRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAF 126
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-RKQERE 123
GNILSCK+ATDG+ SKGFGFV F+ +E+A AI+K+NG L+ND +V+VG F+ RK
Sbjct: 127 GNILSCKVATDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSH 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T + NVF+KN E TD L +F +YG+I SAVVM+DG+G SK FGFV+FE+ +
Sbjct: 187 TNGFNQHYTNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHE 246
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A+ AV+A++ + R+ Y G+AQKK+ER +EL + E+ +E + ++QG+NLYIKNL
Sbjct: 247 AASAAVQAVHNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLE 306
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D++ +EKLK FS+FG+ITS K+M D G SKG GFV FS+PEEA++A+ EMNG+++VSK
Sbjct: 307 DTLGEEKLKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSK 366
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP-RMPMYPPGP-SGLGQQ--FLYGQA 359
PLYVA+AQRKEER+A L AQ +M+ +A G +P +M MYPP G+ Q F A
Sbjct: 367 PLYVALAQRKEERQAHLAAQ--RMQRIARG--IPQGQMQMYPPYYMPGIQNQRPFFTAMA 422
Query: 360 PPAIIPPQAGFGYQQQLVPGMR-----PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ 414
P G + G A P P+ + GQ+ P
Sbjct: 423 AGYTARPWQGGPMHRPFSGGYNMHHRTRANVPRPSVGGAGGAGGQRMNTP---------- 472
Query: 415 QTQQPLPIMPHQ-MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
QTQ+ I P Q + P+G P G F GA + G +G
Sbjct: 473 QTQR---IAPQQRLNPQGR----PGGVQQTKLQFSAGA-------RNQPGGPMGGGMDLG 518
Query: 474 Q-PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
Q P P++ LS P +++ ++GE LY + D A K+TGMLLEMD +E+LH+L
Sbjct: 519 QDPEPLSTLS----QTDPMKRKQIIGEHLYRAISASHPDKAGKITGMLLEMDNSELLHML 574
Query: 533 ESPEALKAKVAEAMEVLR 550
E+PE+L +KV EA+ VLR
Sbjct: 575 EAPESLNSKVEEAVNVLR 592
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L +++ L E FS+ G + S +V RD + S G +V F P +A RAL
Sbjct: 16 SLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDT 75
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN + I +P + +QR
Sbjct: 76 MNYEPIKGQPCRIMWSQR 93
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 267/594 (44%), Positives = 367/594 (61%), Gaps = 66/594 (11%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+FGN
Sbjct: 87 AERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 146
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-RKQERETV 125
ILSCK+ D SG SKG+GFV FE +E+A +I+K+NGML+N K+V+VG F+ RK+ ++ +
Sbjct: 147 ILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGKFIPRKERQKEL 206
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+ +
Sbjct: 207 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNS 266
Query: 185 AAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KNL
Sbjct: 267 AEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLD 326
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG+++ SK
Sbjct: 327 DTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSK 385
Query: 304 PLYVAVAQRKEERRARLQAQFSQ----MRPVAMG--------------PSVPPRMPMYPP 345
PLYVA+AQRKE+R+A L +Q+ Q MR MG P++P Y
Sbjct: 386 PLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGQIFHQPGNAGSYFVPTLPQPQRFY-- 443
Query: 346 GPSGLGQQFLYGQAP--PAIIPPQA-----GFGYQQ------------QLVPGMRPAGAP 386
GP+ + Q + P P + P A GF Q +R +
Sbjct: 444 GPAQMAQIRATPRWPAQPNQVRPNAQTGNSGFASMQAAPFRAAPRAPAAQAGALRNNMSA 503
Query: 387 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP 446
P + VS Q R AGP + + P Q P + Y NM++ P
Sbjct: 504 RPITGLQAVSNNMQ-----SRSMAGPA------VGVSPGQSRPSNYKYT----ANMRNPP 548
Query: 447 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 506
A LP P G + + GQ P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 549 ---QAAMALPTPS--GPSMQQAVHIQGQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIH 600
Query: 507 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 560
+ K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA P
Sbjct: 601 DMNPQLTGKITGMLLEIDNSELLHMLEHKESLKAKVDEAVAVLQAHQAKQAVAP 654
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 167/312 (53%), Gaps = 38/312 (12%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN--------- 90
++++ NL I L + FS+ G +LS ++ D + +S G+ +V F+
Sbjct: 11 ASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVVGD 70
Query: 91 -------------KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVK 137
+ A+ A+D +N +I + + + +R+ K+ NVF+K
Sbjct: 71 GGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMW----SQRDPSLRKSGVGNVFIK 126
Query: 138 NLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 197
NLD++ ++ + F +G I S V +D G SK +GFV+FE + A K++E +NG
Sbjct: 127 NLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLL 186
Query: 198 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
+ ++ YVGK + ER++EL E F N+Y+KN G+ + D+KLKE+F +
Sbjct: 187 NGKKVYVGKFIPRKERQKEL--------GEKAKLF--TNVYVKNFGEDMTDDKLKEMFEK 236
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEER 316
+GTITS KVM G S+G GFVAF P A +A+ ++NGK I K +YV AQ+K ER
Sbjct: 237 YGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAER 296
Query: 317 RARLQAQFSQMR 328
+ L+ +F Q++
Sbjct: 297 QQELKRKFEQLK 308
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/580 (43%), Positives = 366/580 (63%), Gaps = 46/580 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+R+SG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSC++A D SG SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDP 242
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 243 NAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKN 302
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS EEA++A+ EMNG+++
Sbjct: 303 LDDTIDDERLRKEFAPFGTITSVKVMME-DGRSKGFGFVCFSLAEEATKAVTEMNGRIVG 361
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG-------------PSVPPRMPMYP 344
SKPLYVA+AQRKE+R+A L +Q+ Q +R MG P++P Y
Sbjct: 362 SKPLYVALAQRKEDRKAHLASQYLQRVANIRMQHMGQVFQAGGAGSYFVPTLPQPQRFY- 420
Query: 345 PGPSGLGQQFLYGQAPPAIIPPQ---AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 401
GP+ + Q + P + P AG + P AP +++
Sbjct: 421 -GPAQMAQIRTTPRWPAQPVRPNAQAAGSNFATMQTPFRAAPRAPTAQ---SSMARNALS 476
Query: 402 QRP-GGRR---GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 457
RP G++ GA +Q P + + P+ Y NM++ P M + P
Sbjct: 477 ARPITGQQAVPGAANMQNRSMAGPAV--GVSPQSRTSNYKYTANMRNPPQTMAMPAQTPA 534
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
++ + P+TA + LA+A P++Q+ +LGE L+PL++ + K+T
Sbjct: 535 ---------QQAVHIQGQEPLTA--SMLADAPPQEQKQMLGERLFPLIQCMYPHLTGKIT 583
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
GMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 584 GMLLEIDNSELLHMLEHGESLKAKVEEAVAVLQAHQAKQA 623
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 169/290 (58%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ ++ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDIIKGRPIRIMW----SQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELG- 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 186 --EKAKLFT-------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P A RA+A++NGK I K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLK 286
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/601 (42%), Positives = 362/601 (60%), Gaps = 71/601 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV----------------PPRMPM 342
KPLYVA+AQRKEER+A L Q+ Q MR + GP + PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLGSFQQPANYFLPAMPQPPNRTF 419
Query: 343 YPPGPSG---LGQQFLYGQA------PPA----IIPPQAGFGYQQQLVPGMRPAGAPMPN 389
Y P P Q+ Q+ PPA +PP+ + M+ A +P
Sbjct: 420 YSPNPVAPVRQAPQWTSHQSRPPQYQPPAPLMRAVPPRR----MSSNISTMKQASTQVPR 475
Query: 390 FFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFD 448
V Q+ G + Q + MPH Y+Y RN+Q +
Sbjct: 476 ----VAPHSQRVANIGTQTAGARAQVNPSIMRTMPH--------YKYSCAVRNVQPIGTN 523
Query: 449 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 508
++ V M GQ P+TA ++LA+A P++Q+ +LGE LYPL+ ++
Sbjct: 524 THLQQVMEPAVLMQ----------GQE-PLTA--SSLASAPPQEQKQMLGERLYPLIHEM 570
Query: 509 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 568
A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA + + A S
Sbjct: 571 HPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQS 627
Query: 569 L 569
L
Sbjct: 628 L 628
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/589 (43%), Positives = 354/589 (60%), Gaps = 54/589 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GN+FIKNLDKSID+KA++DTFS+F
Sbjct: 64 ADAERALDTMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAF 123
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKGFGFV FE +E+A A+ K+NGM++N K+V+VG F+ + ER
Sbjct: 124 GNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLA 183
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ +F N++VKN + D+ L+ F +YG + SA VM D G S+ FGFV++E
Sbjct: 184 AMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEP 243
Query: 183 DDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A KA E +N + DD R YVG+AQKK+ER+ ELK +FE+ +E + ++QG+NLY+KN
Sbjct: 244 DSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKN 303
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L +ID+E L++ FS+FGTITS KVM + +G SKG GFV FS+PEEA++A+ EMNG+++V
Sbjct: 304 LDSTIDEEILRKEFSQFGTITSSKVMTE-NGRSKGFGFVCFSSPEEATKAVTEMNGRIVV 362
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRKE+R+A+L +Q+ Q R M RMP P G + P
Sbjct: 363 SKPLYVALAQRKEDRKAQLASQYMQ-RMAGM------RMPAPQPNQMFQGSSYFMPSMQP 415
Query: 362 AIIPPQA----GFGYQQQLVPGMRPAGAPMPNFFVPVVSQ---------------GQQGQ 402
P Q QQ P MRP G +P Q
Sbjct: 416 RYFPSQMAQVRASPRWQQAAP-MRPGGQATAFQAMPAAGSRFPAATAPRAAAAAVRQVAP 474
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 462
+ R P Q+ + M +Q P G+ Y M++ P +M P V +
Sbjct: 475 QAMARTTQPPAQRMAGRVAAMANQQPRPGYKYT----ATMRNPPSGGQPQAMNPSAVHVQ 530
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
GQ P+T ST LA A P++Q+ +LGE L+PL++ D A K+TGMLLE
Sbjct: 531 ----------GQE-PLT--STMLAAAPPQEQKQMLGERLFPLIQNSHPDLAGKITGMLLE 577
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
+D E+LH+LES E+LKAKV EA+ VL QA+ +Q A + E
Sbjct: 578 IDNAELLHMLESRESLKAKVEEAVAVL------QAHQAKEQAARAGVAE 620
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 163/291 (56%), Gaps = 16/291 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
++++ +LD I L++ FS G +LS ++ D + +S G+ +V F+ A+ A+
Sbjct: 11 CASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERAL 70
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D +N I K + + +R+ K+ NVF+KNLD+S ++ + F +G I
Sbjct: 71 DTMNFDTIKGKPMRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNI 126
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V +D G SK FGFV+FE + A +A+ +NG + ++ YVG+ +SER
Sbjct: 127 LSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSER----- 181
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
AM E +F N+Y+KN GD DD+KL++ F ++G + S KVM D G S+G G
Sbjct: 182 ---LAAMGEAQKRF--TNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFG 236
Query: 279 FVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
FV++ P+ A +A EMN + + +YV AQ+K ER+A L+A+F +++
Sbjct: 237 FVSYEEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIK 287
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/582 (43%), Positives = 345/582 (59%), Gaps = 68/582 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A ALD +N+ + + IRIM+S RDP +RKSG GNIFIKN+D+SID+KAL+DTFS+F
Sbjct: 63 ADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E E LK IF E+G S VM D G+S+ FGFVNF N
Sbjct: 182 EMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DA +AV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E + ++QG+NLY+KNL
Sbjct: 242 GDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ F+ +GTITS KVM D G S+G GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRKEER+A L Q+ Q +R + GP++P
Sbjct: 361 KPLYVALAQRKEERKAILTNQYIQRLASIRAIP-GPAIPTTY------------------ 401
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 418
Q G GY VP +R +PN P Q R +G P Q +Q
Sbjct: 402 --------QQGSGYYMTSVPQVRSFYNAVPN-LRPAPRWASQAPRT---QGPFPAQFVRQ 449
Query: 419 PLPIMPHQM--PPRGHAYRYPLGRNMQ---DFPFDMGAGSMLPVPV------DMGAGIPR 467
+P P R + + P N Q + G V AG+
Sbjct: 450 AVPRRPSTTISTVRQASTQVPHINNTQRMANIGTQTAGGRAAGTAVRGVSQYKYSAGVRN 509
Query: 468 RDASVGQPMPITA-----------------LSTALANASP-EQQRTLLGESLYPLVEQLE 509
+ P P+ L+ ++ A+P ++Q+ LLGE LYPL++ L
Sbjct: 510 VQQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASMLAAAPLKEQKQLLGERLYPLIQILH 569
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLE+D +E+LH+LESPE+L AKV EA+ VL++
Sbjct: 570 PALAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAVLQA 611
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L + FS G I S +V RD + S G ++ F P +A AL
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNYEVIKGRPIRIMWSQR 89
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/588 (44%), Positives = 355/588 (60%), Gaps = 55/588 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D GQSKG+GFV FE +ESA +I+K+NGML+N+K+VFVG F+ ++ERE
Sbjct: 123 GNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREK 182
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E T+E L ++F +YG+ITS VM DGKS+ FGFV FEN
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMK-DGKSRGFGFVAFENP 241
Query: 183 DDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A +AV+ LN K+ D + YVG+AQKK+ER+ ELK +FEQ E + ++ G+NLY+KN
Sbjct: 242 DAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKN 301
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F+ +GTITS KVM D G SKG GFV FS P+EA++A+ EMNG+++
Sbjct: 302 LDDTIDDERLRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMNGRIVG 360
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
SKPLYVA+AQRKEER++ L +Q+ Q +R +G + P + Q+F
Sbjct: 361 SKPLYVALAQRKEERKSHLASQYIQRVNSLRMQHIGQVYQQSGSYFMPTIAQ-PQRFYGP 419
Query: 358 QAPPAIIPPQAGFGYQ------QQLVPGMRPAGAPMPNFFVPVVSQG---QQGQRPGG-- 406
Q P+ Q Q V PAGA + Q G GG
Sbjct: 420 QVAQVRTAPRWSANAQMRPNAANQSVAANAPAGAYQAMSAAAHAANNQYRQAGNVRGGAN 479
Query: 407 ----------------RRGAGPVQQTQ-----QPLPIMPHQMP--PRGHAYRYPLGRNMQ 443
R A P+ Q Q P+ P PR +Y+Y
Sbjct: 480 QQAQNAQSAQATSAAMRNSARPITGQQPGANMQTRPVAPQMTAAQPRPQSYKYTANMRNP 539
Query: 444 DFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 503
P +P+P+ + ++ V P+TA + LA A P +Q+ +LGE L+P
Sbjct: 540 QVP------QQVPIPLQQ---VNQQAVIVKGQEPLTA--SMLAAAQPAEQKNMLGERLFP 588
Query: 504 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
L+E + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++
Sbjct: 589 LIEAMHPQLTGKITGMLLEIDNSELLHMLEHHESLKAKVEEAVAVLQA 636
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 163/290 (56%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N I + + + +R+ K+ NVF+KNLD+ ++ + F +G I
Sbjct: 71 TMNFDTIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G+SK +GFV+FE + A ++E +NG ++++ +VG+ + ERE+EL
Sbjct: 127 SCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKEL-- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + +E L E+F ++G+ITS +VM G S+G GF
Sbjct: 185 ------GEKAKLF--TNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMK-DGKSRGFGF 235
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A RA+ E+N K + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 236 VAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLK 285
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
+Q +LY+ +L I + L E FS G + S +V RD + S G +V F P +A R
Sbjct: 8 YQMASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAER 67
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL MN I +P+ + +QR
Sbjct: 68 ALDTMNFDTIKGRPIRIMWSQR 89
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 268/583 (45%), Positives = 364/583 (62%), Gaps = 54/583 (9%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL+ NFT +N KSIR+M+S+RDP++R+SG N+FIKNL+ +I K+LH FS FG
Sbjct: 85 AKVALEYFNFTVVNGKSIRVMFSNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGI 144
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND--KQVFVGHFLRKQERET 124
ILSCK+ATD +G+SKG+GFVQF ++ESA++A++ LNG L N KQ++V F+R++ER+
Sbjct: 145 ILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQH 204
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ +KF NV+ KNL + TD+DL ++F +GTITSAVVM+DGDG+SKCFGFVN+E +
Sbjct: 205 IGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEY 264
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A +AVE LNGK D YVG+A++K ER+ ELK +F++ + + K +G NLY+KNL
Sbjct: 265 AEEAVEKLNGKIISDVALYVGRAKRKQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDC 324
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SK 303
SIDDE L+ LF F I +CKVM D G SKG GFV F+T E A++A++ N + +V +K
Sbjct: 325 SIDDEYLRNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTK 384
Query: 304 PLYVAVAQRKEERRARLQAQFSQ-----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
LYV VAQRKEER A L AQF++ R AM ++ PR P Y F YG
Sbjct: 385 LLYVCVAQRKEERSAILAAQFARRHMVGARTPAMPQNIAPR-PFY----------FGYG- 432
Query: 359 APPAIIPPQA-GFGYQQQ---LVPGMRPAGAP---MP-NFFVPVVSQGQQ--GQRPGGRR 408
P ++ PQA GFGYQQ ++PG+ P GAP MP + P+ Q QQ Q P
Sbjct: 433 VPGVLVRPQATGFGYQQYPQPVIPGLNP-GAPSLMMPYHMLRPIHHQPQQQMAQLPNW-- 489
Query: 409 GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQ-DFPFDMGAGSMLPVPVDMGAGIPR 467
Q + MP +A P M F + V D P
Sbjct: 490 --------NQIVRYMP-------NACNGPTNSAMAPQMDFVAPVVPQISVLTDSVVTAP- 533
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
S+ + I +L+TALA+A PE+Q +LGE L PLV QLE + A KVT MLLE+++
Sbjct: 534 ---SISEEPSIDSLATALASAEPEKQHLILGERLQPLVAQLEPEHAGKVTEMLLELEKAV 590
Query: 528 VLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 570
VL L+ES E L+ KV +AME LR ++ N+PA+ +SLSL+
Sbjct: 591 VLELIESAENLQEKVNQAMESLRPKKEEGTNDPAEP-SSLSLS 632
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 159/290 (54%), Gaps = 19/290 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ NL+ S+ + L D FS ++S +I D +G+S G+ +V F + E A+ A++
Sbjct: 32 SVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEY 91
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
N ++N K + V R+ ++ N+F+KNL+ + + L ++F +G I S
Sbjct: 92 FNFTVVNGKSIRVMF----SNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGIILS 147
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK--KFDDREWYVGKAQKKSEREQELK 218
V D +GKSK +GFV F + + A A+ ALNGK + ++ YV ++ ER Q +
Sbjct: 148 CKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREER-QHIG 206
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
G KF N+Y KNL D+ L +F+ FGTITS VM+D G SK G
Sbjct: 207 G---------ASKFT--NVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFG 255
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV + E A A+ ++NGK+I LYV A+RK+ER+A L+ +F + R
Sbjct: 256 FVNYEKTEYAEEAVEKLNGKIISDVALYVGRAKRKQERQAELKEKFDKER 305
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALA 293
+++Y+ NL S+ +++L +LFS+ + S ++ D +G S G +V F + E+A AL
Sbjct: 31 VSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALE 90
Query: 294 EMNGKMIVSKPLYVAVAQRKEERR 317
N ++ K + V + R R
Sbjct: 91 YFNFTVVNGKSIRVMFSNRDPTLR 114
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/592 (43%), Positives = 355/592 (59%), Gaps = 53/592 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+G+GFV FE E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ F +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV----------------PPRMPM 342
KPLYVA+AQRKEER+A L Q+ Q MR + GP + PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLGSFQQPANYFLSAMPQPPNRTF 419
Query: 343 YPPGPSG----LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 398
Y P P Q + PP PP Q + + VP V+Q
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRRMSSNISTMKQASTQVPRVAQH 479
Query: 399 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPV 457
Q G + AG Q P M MP Y+Y G RN+Q ++
Sbjct: 480 SQRVANIGTQTAGARAQVN---PSMMRTMP----HYKYSCGVRNVQPIVSSTHLQQVMEP 532
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
V M GQ P+TA + LA A P++Q+ +LGE +YP++ ++ A K+T
Sbjct: 533 AVLMQ----------GQE-PLTA--SLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKIT 579
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 569
GMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENAQKSAQPSL 628
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LYI +L + + L E FS G I S +V RD + S ++ F P +A RAL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/576 (44%), Positives = 355/576 (61%), Gaps = 42/576 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 --VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VM+D +G S+ FGFVNFE
Sbjct: 182 ELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R+ YVG+AQK+ ER+ ELK +FEQ ++ ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG++I +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIIGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEERRA L Q+ Q MR + +G S P P P +
Sbjct: 361 KPLYVALAQRKEERRAILSNQYMQRLSTMRALGVPLLGSSQQPTSYFLPAMPQPPARAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
YG A I P + Q RP+ A M V +RP +
Sbjct: 421 YGSGSVATIQPAPRWAAQPP-----RPSCASM-------VRPPATPRRPLAQLSTVRQAS 468
Query: 416 TQQPLPIMPH--QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
TQ P P+ PH ++ G P G +G +L +P + +
Sbjct: 469 TQVPHPV-PHTQRVANIGTQTTGPGGAE------GCTSGQLL-LPYRHSSAAHNVHRVLE 520
Query: 474 QPM----PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 529
PM P+TA + LA A P +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L
Sbjct: 521 SPMHRQEPLTA--SMLAAALPHEQKQMIGERLYPLIYGVYPHLAGKITGMLLEIDNSELL 578
Query: 530 HLLESPEALKAKVAEAMEVLRSVAQQQANNP-ADQL 564
+LESPE+L+AK+ EA+ VL+ A Q +P AD L
Sbjct: 579 LMLESPESLQAKIEEAVAVLQ--AHQAMEHPRADLL 612
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E F G I S +V RD + S ++ F P +A RAL
Sbjct: 12 SLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/577 (44%), Positives = 349/577 (60%), Gaps = 56/577 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A ALD +N+ + + IRIM+S RDP +RKSG GNIFIKN+D+SID+KAL+DTFS+F
Sbjct: 63 ADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G SKG+GFV FE +E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREV 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ KF NV++KN E TDE LK++F +G S VM+D G+S+ FGFVN+ +
Sbjct: 182 EFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV +NGK+ + + YVG+AQK+ ER+ ELK +F+Q ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDE+L++ F+ +GTITS KVM D S SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDERLRKEFAPYGTITSAKVMTDGSQ-SKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQR+EER+A L ++ Q R + P + Y Q Y P
Sbjct: 361 KPLYVALAQRREERKAILTNKYMQ-RLATLRTMASPLIDSY-------HQSGYYVTLPQ- 411
Query: 363 IIPPQAGFGYQQQLVPGMRP----AGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV----- 413
PP F Y V +RP G P P P +Q G P RRG+ P+
Sbjct: 412 --PPMRSF-YNHSAVSSVRPVPRWTGQP-PRPQGPYTTQLVSGSVP--RRGSTPIATVRQ 465
Query: 414 QQTQQPLPIMPHQMP-----------------PRGHAYRYPLG-RNMQDFPFDMGAGSML 455
TQ P + Q R Y+Y RN Q +
Sbjct: 466 ASTQAPRIVTSTQKTNDIGTQTVGGRTDIASVARSSQYKYASAVRNPQQV-------VTV 518
Query: 456 PVP-VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
P P V + + P P+TA + LA A P Q+ LLGE LYPL+ L + A
Sbjct: 519 PAPMVHNDLQLMEPPVHIQGPEPLTA--SVLAAAPPMDQKQLLGERLYPLIHALHPNLAG 576
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLE+D +E+LH+LES E+L AKV EA+ VL++
Sbjct: 577 KITGMLLEIDNSELLHMLESQESLHAKVDEAIAVLQA 613
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L + FS G I S +V RD + S G +V F P +A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I +P+ + +QR
Sbjct: 72 MNYDVIKGRPIRIMWSQR 89
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/582 (43%), Positives = 345/582 (59%), Gaps = 68/582 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A ALD +N+ + + IRIM+S RDP +RKSG GNIFIKN+D+SID+KAL+DTFS+F
Sbjct: 63 ADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E E LK IF E+G S VM D G+S+ FGFVNF N
Sbjct: 182 EMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DA +AV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E + ++QG+NLY+KNL
Sbjct: 242 GDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ F+ +GTITS KVM D G S+G GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRKEER+A L Q+ Q +R + GP++P
Sbjct: 361 KPLYVALAQRKEERKAILTNQYIQRLASIRAIP-GPAIPTTY------------------ 401
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 418
Q G GY VP +R +PN P Q R +G P Q +Q
Sbjct: 402 --------QQGSGYYMTSVPQVRSFYNAVPN-LRPAPRWAFQAPRT---QGPFPAQFVRQ 449
Query: 419 PLPIMPHQM--PPRGHAYRYPLGRNMQ---DFPFDMGAGSMLPVPV------DMGAGIPR 467
+P P R + + P N Q + G V AG+
Sbjct: 450 AVPRRPSTTISTVRQASTQVPHINNTQRMANIGTQTAGGRAAGTAVRGVSQYKYSAGVRN 509
Query: 468 RDASVGQPMPITA-----------------LSTALANASP-EQQRTLLGESLYPLVEQLE 509
+ P P+ L+ ++ A+P ++Q+ LLGE LYPL++ L
Sbjct: 510 VQQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASMLAAAPLKEQKQLLGERLYPLIQILH 569
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLE+D +E+LH+LESPE+L AKV EA+ VL++
Sbjct: 570 PALAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAVLQA 611
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L + FS G I S +V RD + S G ++ F P +A AL
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNYEVIKGRPIRIMWSQR 89
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/605 (43%), Positives = 363/605 (60%), Gaps = 101/605 (16%)
Query: 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
+NF + K IRIM+S RDPS+RKSG GN+FIKNLD+SID+KAL+DTFS+FGNILSCK+
Sbjct: 1 MNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 60
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK-F 131
D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE + K K F
Sbjct: 61 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
NV++KN E D +LK++F ++G S VMRD GKSK FGFV++E +DA KAVE
Sbjct: 120 TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL
Sbjct: 180 MNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQ
Sbjct: 240 RREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 312 RKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG 371
RKEER+A L Q+ M+ VA ++P S + QF P AG G
Sbjct: 299 RKEERKAHLTNQY--MQRVAGMRALP---------ASAILNQF----------QPAAG-G 336
Query: 372 YQQQLVPGMRPAGAPMPNFFVP-VVSQ------GQQGQRPGGRRGAGPVQQTQQPLPIMP 424
Y VP + P P ++ P ++Q QQG RP G +G + P P +
Sbjct: 337 Y---FVPAV-PQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPALR 392
Query: 425 HQMPPRGHAYRYPLGRNM--------QDFPFDM-----GAGSM----------------L 455
H + P G+A P R + + P + GAG+
Sbjct: 393 H-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQCWRRPYSR 448
Query: 456 PVPVDMGAGIPRRDASVG----------------QPM-------------PITALSTALA 486
P G RR G QP+ P+TA + LA
Sbjct: 449 AKPCTSGRSCCRRSQGCGSIQVRLQLSAAALPAIQPLQAPQPAVQVQGQEPLTA--SMLA 506
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+
Sbjct: 507 AAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAV 566
Query: 547 EVLRS 551
VL++
Sbjct: 567 AVLQA 571
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/568 (45%), Positives = 355/568 (62%), Gaps = 70/568 (12%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +ALD +NF P+ + RIM+ RDPS+RKSG GNIFIKNLDKSID+K+L+DTFS+FGN
Sbjct: 67 AEKALDTMNFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGN 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-ETV 125
ILSCKIA D G KG+GFV FE +++A AI +++GML+NDK+VFVG ++ K+ER E +
Sbjct: 127 ILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKM 186
Query: 126 AIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ KF NV+VKN + DE +K+I E G I S VM D +GKSK FGFV+FE ++
Sbjct: 187 GTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEE 246
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A +AV LNGK+ R + G+A+K++ER E+K + E+ +E +++FQG+NLYIKNL D
Sbjct: 247 AEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDD 306
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L+E FS +GTI+S KVM+D G SKG GFV FS+PEEA++A+ EMNG++++SKP
Sbjct: 307 PIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKP 366
Query: 305 LYVAVAQRKEERRARLQAQ----FSQMR-PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
LYVA+AQR+EER+A+L AQ S +R P P+MP P +G
Sbjct: 367 LYVALAQRREERKAQLAAQHMHRISGLRMHQGQRPFFTPQMPQVRP---------RWGMP 417
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
P QQ MRP G V + G Q P G GP
Sbjct: 418 P-------------QQQQQQMRPTG---------VQNMGGQAGMPQG----GPAG----- 446
Query: 420 LPIMPHQ------MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
+P MP Q +PP+ Y++ + +++ P AG M + G GIP G
Sbjct: 447 MPRMPVQQARMGGVPPQRQPYKF--SQTVRNPP---PAGQM----PEGGQGIP------G 491
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+ + LA A+P++Q+ +LGE L+PL++ D A K+TGMLLE+D E+LH+LE
Sbjct: 492 GQEPLN--PSVLAAATPQEQKQMLGERLFPLIQTNHPDMAGKITGMLLEIDNAELLHMLE 549
Query: 534 SPEALKAKVAEAMEVLRSVAQQQANNPA 561
S +AL+ KV EA+ VLR+ +++ A
Sbjct: 550 SRDALQMKVDEAVSVLRAHQAKESTTAA 577
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 166/288 (57%), Gaps = 15/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS+ G++LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDT 73
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I + + Q+R+ K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 74 MNFDPIKGRPCRIMW----QQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGNILS 129
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ +D G K +GFV+FE D A +A+ ++G +D++ +VG+ K ER +++ Q
Sbjct: 130 CKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQ 189
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ KF N+Y+KN GD +DDE++KE+ +E G I S KVM DP G SKG GFV
Sbjct: 190 PK--------KF--TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFV 239
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F TPEEA A+ +NGK I + L+ A+++ ER A ++A+ + R
Sbjct: 240 SFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKR 287
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/584 (44%), Positives = 357/584 (61%), Gaps = 39/584 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RAL+ LN++ + NK+ RIM+S RDPS+RK+G GNIFIKNLD++ID+KALHDTF++F
Sbjct: 225 ADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAF 284
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ATD G SKG+GFV + ESA+ AI +NGM +NDK VFVG + +++R+
Sbjct: 285 GDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQA 344
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
++++F N+++KNL TT E+L ++FG++G ITSA V D GK + FGFVN+EN
Sbjct: 345 KIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENH 404
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A+KAV+AL+ K + YV +AQK++ER+ ELK EQ ET K+QG+NLY+KNL
Sbjct: 405 ESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNL 464
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D DDEKL+ F+ FGTITSCKVM+D G SKG GFV FS+P+EA++A+AEMNGKM+ S
Sbjct: 465 DDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGS 524
Query: 303 KPLYVAVAQRKEERRARLQAQF---SQMRP---VAMG-PSVP---PRMPMYPPG----PS 348
KPLYV++AQRKE R+ +L+AQ SQMR A G P P P PMY G P
Sbjct: 525 KPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPP 584
Query: 349 GLGQQFLY-GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
G+ +Y PA +PP+ + Q+ P P GAP P Q
Sbjct: 585 HGGRGMMYPPNGMPAGMPPRPRYAPPGQMAPMGMPGGAPYPPH--------PQDYPGYPV 636
Query: 408 RGAGPVQQTQQPLPIMPHQM----PPR---GHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 460
G P + +P P + PP G+ P P G GSM P
Sbjct: 637 GGPVPPVGGMRGIPGPPAHLGGPNPPNFRGGNGAPIPPMNGRGSAPSTNGPGSMRGAPPQ 696
Query: 461 MGAGIPRRDAS-------VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 513
G S V P+ ALA ASP +Q+ +LGE+LYP + + + + A
Sbjct: 697 SRDGYAPSSLSGRAVSHRVSDIAPVGLSPAALAKASPAEQKQMLGEALYPQIAEKQPEKA 756
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
K+TGM+LE++ E++HLLE+ AL AKV EA++VL ++ A
Sbjct: 757 GKITGMILEIENAELIHLLENRPALDAKVQEAVQVLDEYERKDA 800
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 20/200 (10%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 190
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA DA +A+E
Sbjct: 173 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 232
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN ++ + +Q+ + +G N++IKNL ++ID++
Sbjct: 233 QLNYSLIKNKACRIMWSQRDPSLRKTGQG----------------NIFIKNLDETIDNKA 276
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + F+ FG I SCKV D G SKG GFV + T E A A+ +NG + K ++V +
Sbjct: 277 LHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIH 336
Query: 311 QRKEERRARL---QAQFSQM 327
+ +R+A++ ++QF+ +
Sbjct: 337 VPRRDRQAKIDEVRSQFTNL 356
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/584 (44%), Positives = 357/584 (61%), Gaps = 39/584 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RAL+ LN++ + NK+ RIM+S RDPS+RK+G GNIFIKNLD++ID+KALHDTF++F
Sbjct: 136 ADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAF 195
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ATD G SKG+GFV + ESA+ AI +NGM +NDK VFVG + +++R+
Sbjct: 196 GDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQA 255
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
++++F N+++KNL TT E+L ++FG++G ITSA V D GK + FGFVN+EN
Sbjct: 256 KIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENH 315
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A+KAV+AL+ K + YV +AQK++ER+ ELK EQ ET K+QG+NLY+KNL
Sbjct: 316 ESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNL 375
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D DDEKL+ F+ FGTITSCKVM+D G SKG GFV FS+P+EA++A+AEMNGKM+ S
Sbjct: 376 DDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGS 435
Query: 303 KPLYVAVAQRKEERRARLQAQF---SQMRP---VAMG-PSVP---PRMPMYPPG----PS 348
KPLYV++AQRKE R+ +L+AQ SQMR A G P P P PMY G P
Sbjct: 436 KPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPP 495
Query: 349 GLGQQFLY-GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
G+ +Y PA +PP+ + Q+ P P GAP P Q
Sbjct: 496 HGGRGMMYPPNGMPAGMPPRPRYAPPGQMAPMGMPGGAPYPPH--------PQDYPGYPV 547
Query: 408 RGAGPVQQTQQPLPIMPHQM----PPR---GHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 460
G P + +P P + PP G+ P P G GSM P
Sbjct: 548 GGPVPPVGGMRGIPGPPAHLGGPNPPNFRGGNGAPIPPMNGRGSAPSTNGPGSMRGAPPQ 607
Query: 461 MGAGIPRRDAS-------VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 513
G S V P+ ALA ASP +Q+ +LGE+LYP + + + + A
Sbjct: 608 SRDGYAPSSLSGRAVSHRVSDIAPVGLSPAALAKASPAEQKQMLGEALYPQIAEKQPEKA 667
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
K+TGM+LE++ E++HLLE+ AL AKV EA++VL ++ A
Sbjct: 668 GKITGMILEIENAELIHLLENRPALDAKVQEAVQVLDEYERKDA 711
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA DA +A+E
Sbjct: 85 SLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQ 144
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN ++ + +Q+ + +G N++IKNL ++ID++ L
Sbjct: 145 LNYSLIKNKACRIMWSQRDPSLRKTGQG----------------NIFIKNLDETIDNKAL 188
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D G SKG GFV + T E A A+ +NG + K ++V +
Sbjct: 189 HDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHV 248
Query: 312 RKEERRARL---QAQFSQM 327
+ +R+A++ ++QF+ +
Sbjct: 249 PRRDRQAKIDEVRSQFTNL 267
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 272/652 (41%), Positives = 363/652 (55%), Gaps = 123/652 (18%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 106 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 165
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 166 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 225
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+D TDE+ +++FG++G ITSA + RD GKS+ FGFVN+ + ++A
Sbjct: 226 MKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQ 285
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LN K F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 286 TAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDV 345
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGI--------------------------------- 273
DDEKL+ELFS FGTITS KVMRD G
Sbjct: 346 DDEKLRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDK 405
Query: 274 -------------SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320
SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L
Sbjct: 406 TDAKKSDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQL 465
Query: 321 QAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQ 375
+A + + P+ M P G GQQ FL G A Q G + Q
Sbjct: 466 EASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFLPGNA------GQRGMAFAPQ 519
Query: 376 LVPGMRPAGAPMPNFFVPVVSQGQQGQRP------GGRRGAGPVQQTQ---QPLPIMPHQ 426
PGM AG P G+ GQ P GGR AGP Q Q Q +PI Q
Sbjct: 520 --PGMVMAGIP----------GGRPGQYPGGFPQQGGRGIAGPNQIPQNFGQGIPIGAMQ 567
Query: 427 MPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP------------------ 466
P G + YP M F GAG VP GIP
Sbjct: 568 AGPGGIPNGMAYP---QMAQVQFGRGAGGRGQVP----QGIPPNVGGPRGGPGFGQGRGG 620
Query: 467 ----------RRDASVGQP-----MPITALSTALANASPEQQRTLLGESLYPLVEQLERD 511
++ G P P T AL A P+QQ+ +LGE+LYP ++ + +
Sbjct: 621 MPPRPGPGGRGQNVPAGAPAAPEGTPGTLTLQALTAAPPQQQKQMLGEALYPKIQAQQPE 680
Query: 512 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN-PAD 562
A K+TGMLLEMD E+L L++ AL+AKV EA+ V + + ++ PAD
Sbjct: 681 LAGKITGMLLEMDNAELLGLIDDESALRAKVDEALHVYDEYMKNKGSDEPAD 732
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 158/300 (52%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI + + +R+ KT NVF+KNLD + ++ L
Sbjct: 102 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 217
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KN+ + DE+ +ELF +FG ITS + R
Sbjct: 218 DRQSKFEEMKANF-------------TNVYVKNIDPEVTDEEFRELFGKFGDITSATISR 264
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D SG S+G GFV + E A A+ ++N K + LYV AQ+K ER L+ Q+ R
Sbjct: 265 DDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAAR 324
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/564 (44%), Positives = 351/564 (62%), Gaps = 46/564 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ+AI+ +NGML+ND +VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREV 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+++F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ Q MR + +G P P P GQ
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRALGSPFLGSFQQPTSYFLPAVPQPPGQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG-GRRGAGPVQ 414
YG + ++ PPQ P R P P S + PG RR + +
Sbjct: 421 YGSS--SMPPPQ----------PAPRWTSQP------PRSSSASMVRPPGMSRRPSAHIS 462
Query: 415 QTQQPLPIMPHQMPPRGHAYRYP-LGRNMQDFPFDMGAGSMLP----VPVDMGAGIPR-R 468
+Q +P +P H R +G G G +P +P R +
Sbjct: 463 SMRQASTQVPRPLP---HTQRVANIGTQTTG---SSGTGCCMPGRPLLPYKSTHNTHRVQ 516
Query: 469 DASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ +V P P+T + LA A +Q+ ++GE LYPL+ +++ A K+TGMLLE+D +
Sbjct: 517 EPAVHVPGQEPLTV--SMLAAAPLHEQKQMIGERLYPLIREVQSQLAGKITGMLLEIDNS 574
Query: 527 EVLHLLESPEALKAKVAEAMEVLR 550
E+L +LESPE+L AKV EA+ VL+
Sbjct: 575 ELLLMLESPESLHAKVEEAVAVLQ 598
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +MI +P+ + +QR
Sbjct: 72 MNFEMIKGQPIRIMWSQR 89
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/564 (45%), Positives = 359/564 (63%), Gaps = 50/564 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L RAL+ LN++ + N++ RIM+S RDP++RK+G GNIFIKNLD++ID+KALHDTF++
Sbjct: 89 LQDGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAA 148
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGN+LSCK+ATD +G S+G+GFV +EN ESA AI +NGML+NDK+V+VGH + K+ER+
Sbjct: 149 FGNVLSCKVATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQ 208
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
K++F NVF+KNLD S DE K+I YG I SAVV +D G S+ FGFVN++N
Sbjct: 209 AKIDEQKSQFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKN 268
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
++AAKAVE+LN + D ++ + +AQKK+ERE+EL+ +EQA E + K+ G+NLY+KN
Sbjct: 269 HEEAAKAVESLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKN 328
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D DDE+L F FGTITS K+MRD G SKG GFV FS+P+EA++A++E++GKMI
Sbjct: 329 LDDDFDDERLVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIG 388
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAM----GPSVP-----PRMPMY--PPGPSGL 350
SKPLYV++AQR++ RR +L++Q +Q + + VP P PMY PP +
Sbjct: 389 SKPLYVSLAQRRDVRRQQLESQIAQRNQLRLQHQAAAGVPISGFMPGAPMYYQPPPGAYP 448
Query: 351 GQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRG 409
G + +YGQ P PP+ G+ QQ VPGM QG P R
Sbjct: 449 GGRSMYGQ--PGFAPPRPRGYPAGQQ-VPGMPIPSP---------YGPPPQGYMPANYRP 496
Query: 410 AGPVQ----QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 465
A P + Q Q P + P + P G +PV GA
Sbjct: 497 ARPARANGAQVQGGSPTANNVRPAVPASGPRPAG---------------VPVRPAQGAAK 541
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
P + + G P++A + LANA P +Q+ +LGE+LYP + ++ + A K+TGMLLEM+
Sbjct: 542 PAKQEAGG---PLSA--SVLANAPPAEQKQMLGEALYPKIFNIQPELAGKITGMLLEMEN 596
Query: 526 TEVLHLLESPEALKAKVAEAMEVL 549
+E+L LLE+ EALK+KV EA+ VL
Sbjct: 597 SELLFLLENEEALKSKVDEAIAVL 620
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 17/199 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ N D +A+E
Sbjct: 39 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQ 98
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 99 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEAIDNKAL 142
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG + SCKV D +G S+G GFV + E AS A+ +NG ++ K +YV
Sbjct: 143 HDTFAAFGNVLSCKVATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHV 202
Query: 312 RKEERRARLQAQFSQMRPV 330
K+ER+A++ Q SQ V
Sbjct: 203 SKKERQAKIDEQKSQFTNV 221
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 291
Q +LY+ L ++ + L E+F+ G + S +V RD + S G +V + ++ RA
Sbjct: 36 QSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERA 95
Query: 292 LAEMNGKMIVSKPLYVAVAQR 312
L ++N +I ++ + +QR
Sbjct: 96 LEQLNYSLIKNRACRIMWSQR 116
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/567 (44%), Positives = 342/567 (60%), Gaps = 53/567 (9%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + +S RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG+IL
Sbjct: 102 RALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL 161
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCK+ TD +G+S+GF FV + E+A AI +NGML+NDK+V+VGH + K+ER +
Sbjct: 162 SCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEE 221
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ +F NV++KN+D TD + + + +G S + RD G SK FGFVN+EN + A
Sbjct: 222 LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESAR 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ Y G+AQ KSERE ELK E+ E K G+NLY+KNL D
Sbjct: 282 KAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEW 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F FGTITS KVMRD SG+S+G GFV +S+P+EA++A++EMNGKMI +KPLY
Sbjct: 342 DDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLY 401
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAM--GPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
VA+AQRK+ RR L++Q +Q M G PG G Q +YG
Sbjct: 402 VALAQRKDVRRQALESQIAQRAQQRMQYGAGF--------PGMQGYMGQPMYG------Y 447
Query: 365 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP--I 422
PP G+G Q +PGM P PM + P Q RP QPLP +
Sbjct: 448 PPMPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQSRPR-------FNPNGQPLPGGV 495
Query: 423 MPHQMPPR-------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
+ MPP+ G+ R P G + P G + P PV G+P G
Sbjct: 496 PAYGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQ 554
Query: 476 MPITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
MP A LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLE
Sbjct: 555 MPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLE 614
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVL 549
MD E+LHL+ES AL+ KV EA+ VL
Sbjct: 615 MDNAELLHLVESQPALQEKVDEALRVL 641
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + +Q+ + A+++T QG N++IKNL SID++ L
Sbjct: 107 LNYSLIKGQSCRIMWSQR------------DPALRKT---GQG-NIFIKNLDQSIDNKAL 150
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Query: 312 RKEERRAR---LQAQFSQM 327
K+ER ++ L+AQF+ +
Sbjct: 211 GKKERLSKVEELRAQFTNV 229
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/589 (44%), Positives = 354/589 (60%), Gaps = 58/589 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 64 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 123
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 182
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + D+ LK++F +YG S VM D GKS+ FGFV++E
Sbjct: 183 EMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKH 242
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NG + + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 243 EDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNL 302
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 303 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 361
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG--------------PSVPP---RMP 341
KPLYVA+AQRKEER+A L Q+ Q MR + P+VP R
Sbjct: 362 KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRTT 421
Query: 342 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 401
Y P Q + P Q +P P N + QG
Sbjct: 422 YYAPN------QLTQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRANIRHLAPNASNQG 475
Query: 402 QR--PGGRRGAGPVQQTQQPLPIM----PHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSM 454
R P G + G Q P P M P MPP Y+Y RN Q
Sbjct: 476 PRGMPTGAQRVGGTGQPMGPRPAMGMTTPRAMPP----YKYASTIRNTQ---------PQ 522
Query: 455 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
+ P+ + P V P+TA + LA A P++Q+ +LGE L+PL++ + A
Sbjct: 523 VVQPIALQQAQP--AVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAG 578
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
K+TGMLLE+D +E+LH+LES E+L++KV EA+ VL++ QA A Q
Sbjct: 579 KITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQA---HQAKKDATQ 624
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L I + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 73 MNFDVVKGKPIRIMWSQR 90
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/588 (44%), Positives = 352/588 (59%), Gaps = 82/588 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K++F
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFT----------- 171
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+ D
Sbjct: 172 --------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 223
Query: 185 AAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KNL
Sbjct: 224 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 283
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV+K
Sbjct: 284 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 342
Query: 304 PLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
PLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 343 PLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV---- 389
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG----------------QR 403
P I PQ +G Q P PN P G G +
Sbjct: 390 -PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQ 448
Query: 404 PGGRR--------------GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDM 449
PG R G +Q P + R Y+Y NM++ P M
Sbjct: 449 PGAMRSTLSARPITGQQTVGGANMQSRSMAGPAVGVSAQSRPSNYKYT--SNMRNPPQAM 506
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
+ P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++ +
Sbjct: 507 AIPT--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMY 555
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 556 PQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 603
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 155/290 (53%), Gaps = 37/290 (12%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + ++ +
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFT--------------- 171
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
N+Y+KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 172 ----------------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 215
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 216 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 265
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/552 (45%), Positives = 341/552 (61%), Gaps = 45/552 (8%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+TP+ + RIM+S RDP R++G GNIFIKNLD++ID+KALHDTF++FG IL
Sbjct: 136 RALEQLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKIL 195
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A++ G S G+GFV +E+ ++A+ AI +NGML+NDK+V+VGH + K++R+
Sbjct: 196 SCKVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEE 254
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ + NV+VKNLD + T E+ +K+F +YG ITSA + D +GKS+ FGFVNF + AA
Sbjct: 255 ARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAA 314
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN +F ++ ++G+AQKKSERE+EL+ +E A E + K+QG+NLYIKNL +
Sbjct: 315 KAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDF 374
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L+E F+ FGT TS KVMR P+G S+G GFV +S PEEA++A+AEMNGKMI ++PLY
Sbjct: 375 DDERLQEEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLY 434
Query: 307 VAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
VA+AQRK+ R +L AQ +Q+R + MYP P +Y PPA
Sbjct: 435 VALAQRKDVRHQQLAAQMMQHNQLRLQQQQAAAAAAAQMYPGAPG------MYYPQPPAA 488
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
AG G Q +RP AP QG P + AGP
Sbjct: 489 ----AGMG---QFPGQVRPQYAP----------GIMQGMPPMAGQPAGPYP--------- 522
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV-GQPM----PI 478
P Q PP G +P G P A R A+V QP+ P
Sbjct: 523 PGQFPPAGGM--FPQGYRPPRPPRGAAAPPAGAPAGVPAGAGAPRTAAVPAQPVQPAQPE 580
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
+ ALANASPE+Q+ +LGE++YP + + A K+TGM+LE+ E+LHL+E EAL
Sbjct: 581 VLTAAALANASPEEQKQMLGEAIYPKIASTQPQLAGKLTGMILELPVGELLHLVEDDEAL 640
Query: 539 KAKVAEAMEVLR 550
+KV EA+ VLR
Sbjct: 641 ASKVDEALTVLR 652
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 190
+++V L+ + + L +IF G ++S V RD +S + +VNF NA+D+ +A+E
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN R + +Q+ + + +G N++IKNL ++ID++
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQG----------------NIFIKNLDEAIDNKA 183
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + F+ FG I SCKV + G S G GFV + + + A A+ +NG ++ K +YV
Sbjct: 184 LHDTFAAFGKILSCKVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHH 242
Query: 311 QRKEERRARLQ---AQFSQMRPVAMGPSV 336
K++R+A+++ A ++ + + P+V
Sbjct: 243 ISKKDRQAKIEEARAHYTNVYVKNLDPAV 271
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/578 (44%), Positives = 353/578 (61%), Gaps = 46/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKS+ FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NG + + + +VG+AQKK ER+ ELK +FE +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ +A ++PP + P+ G PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRAMPPNAIINQFQPTS-------GYFMPA 411
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR-PGGRRGAGPVQQTQQPLP 421
+ Q Y P P P + Q P R GP
Sbjct: 412 VPQAQNRTTY---YAPNQLAQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRGN------ 462
Query: 422 IMPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPVDMGAGIPRRDASVGQPM---- 476
M H P G G++M P MG G P + + V QP+
Sbjct: 463 -MRHMSPSGGSQGPRASGQSMAPRP-SMGVPGPRTMSPYKYATSVRNPNPQVVQPIALQQ 520
Query: 477 -----------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D
Sbjct: 521 AQPAVHIQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDN 578
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
+E+LH+LES E+L++KV EA+ VL++ QA A Q
Sbjct: 579 SELLHMLESHESLQSKVEEAVAVLQA---HQAKKDATQ 613
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L I + L E FS G + S +V RD + S G +V FS P +A RAL
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 72 MNFDVVKGKPIRIMWSQR 89
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/586 (44%), Positives = 360/586 (61%), Gaps = 59/586 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G S+G+GFV FE E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + D+ L++IF +G S VM D +G+SK FGFVNFE
Sbjct: 182 EVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E V+++QG+NLY+KNL
Sbjct: 242 EEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ Q MR + +G P PP P +
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQTPSGYFLPPMPQPQTRAAF 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
YG +P + P + Q P + P P+ VP RR +
Sbjct: 421 YGPSPVVPVRPATRWSAQPSR-PPLYPEATPILRAAVP------------PRRLLSNIST 467
Query: 416 TQQPLPIMPHQMPPRGH----------AYRYP----LGRNMQDFPFDMGAGSMLPVPVDM 461
T+Q +P ++PP+ + R P L R Q + + A +M P M
Sbjct: 468 TRQASTQVP-RVPPQAQRLVNIGTQTVSTRLPSSSALPRGTQQYKYSSSARNMQP----M 522
Query: 462 GAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
G P VG+P P+TA + LA A P++Q+ ++GE LYPL+ L A
Sbjct: 523 GHMPP-----VGEPAVHVQGQEPLTA--SLLAAAPPQEQKQMIGERLYPLIHVLHPSLAG 575
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 560
K+TGMLLE+D +E+L LLESP++L++K+ EA+ VL+ A Q P
Sbjct: 576 KITGMLLEIDNSELLLLLESPDSLRSKIEEAVTVLQ--AHQSTETP 619
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/579 (43%), Positives = 357/579 (61%), Gaps = 49/579 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
+LSCK+ D +G SKG+GFV FE +E+A+ AI+K+NG+ +ND++VFVG F ++ERE
Sbjct: 125 VLSCKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 AIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQMR---PVAMGPSVPPRMPMYPPG------PSGLGQQFL 355
LYVA+AQRKEER+A L ++ Q + P P + P P P G P
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAY 422
Query: 356 YGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMP-NFFVPVVSQGQQGQRPGGR 407
Y + A + P + Q Q PG +RPA +P N P SQ + P +
Sbjct: 423 YPPSQTAQLRPSPCWTAQGARPHPFQNKPGAIRPAAPRVPFNTMRPASSQVPRVMSP--Q 480
Query: 408 RGAGPVQQTQQPLPIMP--------HQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVP 458
R A +T P P H +P Y+Y G RN Q
Sbjct: 481 RVANKSTKTVGPRPAAAAAAATPAVHTVP----RYKYAAGVRNPQQH------------- 523
Query: 459 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
++ + + +V T + LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 524 LNAQPQVKMQQPAVHVQGQETLTAAMLASAPPKEQKQMLGERLFPLIQAMHPTLAGKITG 583
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
MLLE D +E+LH+LESPE+L +KV EA+ VL++ ++A
Sbjct: 584 MLLETDNSELLHMLESPESLCSKVDEAVVVLQAHQAKEA 622
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K + + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G + S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNVLSCKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMK 284
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 21/237 (8%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N PLN++ + + R+ + R N++IKN + +D + L D
Sbjct: 150 AAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKD 209
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 210 LFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+T +K KF N++VKNLD++ DE L+K F +GTITSA VM +
Sbjct: 270 VERQT-ELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMME 328
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L ++ Q
Sbjct: 329 G-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P++A AL MN +I KPL + +QR
Sbjct: 61 HPKDAEHALDTMNFDVIKGKPLRIMWSQR 89
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/565 (44%), Positives = 342/565 (60%), Gaps = 49/565 (8%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + +S RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG+IL
Sbjct: 104 RALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCK+ TD +G+S+GF FV + E+A AI +NGML+NDK+V+VGH + K+ER +
Sbjct: 164 SCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ +F NV++KN+D TD + + + +G S + RD G SK FGFVN+EN + A
Sbjct: 224 LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAK 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LN K+ + ++ Y G+AQ KSERE ELK E+ E K G+NLYIKNL D
Sbjct: 284 QAVDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEW 343
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F FGTITS KVMRD SG+S+G GFV +S+P+EA++A++EMNGKMI +KPLY
Sbjct: 344 DDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLY 403
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR L++Q +Q M + PG G Q +YG PP
Sbjct: 404 VALAQRKDVRRQALESQIAQRAQQRM------QYGAGFPGMQGYMGQPMYG------YPP 451
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP--IMP 424
G+G Q +PGM P PM + P Q RP QPLP +
Sbjct: 452 MPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQSRPR-------FNPNGQPLPGGVPA 499
Query: 425 HQMPPR-------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
+ MPP+ G+ R P G + P G + P PV G+P G MP
Sbjct: 500 YGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMP 558
Query: 478 ITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 524
A LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLEMD
Sbjct: 559 ARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMD 618
Query: 525 QTEVLHLLESPEALKAKVAEAMEVL 549
E+LHL+ES AL+ KV EA+ VL
Sbjct: 619 NAELLHLVESQPALQEKVDEALRVL 643
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 49 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + +Q+ + A+++T QG N++IKNL SID++ L
Sbjct: 109 LNYSLIKGQSCRIMWSQR------------DPALRKT---GQG-NIFIKNLDQSIDNKAL 152
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 153 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 212
Query: 312 RKEERRAR---LQAQFSQM 327
K+ER ++ L+AQF+ +
Sbjct: 213 GKKERLSKVEELRAQFTNV 231
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/586 (45%), Positives = 356/586 (60%), Gaps = 60/586 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 68 ADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 127
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-E 123
GNILSCKI D G S+G+GFV FE +E+A+ AI+K+NGML+N K+VFVG F+ ++ER E
Sbjct: 128 GNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLE 186
Query: 124 TVAIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF-VNFEN 181
+ K KFNNV+VKN E DE L+ +F YG I SA VM D V+FE+
Sbjct: 187 VLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFED 246
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVEALNG + YVG+AQKK ER+ ELK +FE+ E ++++QG+NLY+KN
Sbjct: 247 PEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKN 306
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F++FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++V
Sbjct: 307 LDDNIDDERLRKEFAQFGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVV 365
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAM---GPSVPPRMPMYPPGPSGLGQQFLYGQ 358
+KPLYVA+AQRKE+R+A L +Q+ Q R +M G + M+ PG +G
Sbjct: 366 AKPLYVALAQRKEDRKAHLASQYMQ-RITSMRMQGQQIGQVSQMFQPGSAGY-------- 416
Query: 359 APPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG--------------Q 402
+P PQA Y P PA P + V GQ G Q
Sbjct: 417 ----FVPTMPQAQRTY---FTPNNMPAMRSNPRWQTTVRPTGQPGSGFQTMPGAPQIRQQ 469
Query: 403 RPGGRR------GAGPVQQTQQPLPIMPHQMP--------PRGHAYRYPLGRNMQDFPFD 448
RP G+ A P+ Q P +MP P+G P N Q
Sbjct: 470 RPTGQTNVRAGVSARPI-TGQSGTPNAQQRMPVNQQVGGRPQGGQPTVPAAANRQQGYKS 528
Query: 449 MGAGSMLPVPVDMGAGI---PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
G G M+ G+ P + V P+TA T LA A P++Q+ +LGE L+PL+
Sbjct: 529 YGGGQMMKQQPGQTPGMQQAPPQAVIVQGQDPLTA--TMLATAPPQEQKQMLGERLFPLI 586
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ D A K+TGMLLE+D +E+LH+LES E+L+AKV EA+ VL++
Sbjct: 587 STMFPDLAGKITGMLLEIDNSELLHMLESQESLEAKVKEAVAVLQA 632
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 160/289 (55%), Gaps = 17/289 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I + + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 77 MNFDTIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
++ D G S+ +GFV+FE + A A+E +NG + ++ +VG+ + ER + L
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVL--- 188
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR-DPSGISKGSGF 279
+ + KF N+Y+KN + I+DE L+++F +G I S KVM D SG KG GF
Sbjct: 189 -----GDKMRKFN--NVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGF 241
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F PE A +A+ +NG K LYV AQ+K ER+A L+ +F ++R
Sbjct: 242 VSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIR 290
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/584 (44%), Positives = 361/584 (61%), Gaps = 49/584 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF P+ + IRIM+S RDPS+RKSG GN+FIKNLDK ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D GQSKG+GFV FE +ESA +I+K+NGML+N+K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E T+E L+ +F ++G ITS VM DGKS+ FGFV FE
Sbjct: 174 ELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTK-DGKSRGFGFVAFEKP 232
Query: 183 DDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA +AV+ LNGK+ D + YVG+AQKK+ER+ ELK +FEQ E + ++ G+NLY+KN
Sbjct: 233 EDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKN 292
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ F+ +GTITS KVM D G SKG GFV FS P+EA++A+ EMNG+++
Sbjct: 293 LDDTIDDERLRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMNGRIVG 351
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
SKPLYVA+AQRKEER++ L +Q+ Q +R +G + P + Q+F
Sbjct: 352 SKPLYVALAQRKEERKSHLASQYIQRVNSLRMQHIGQVYQQSGSYFMPTIAQ-PQRFYGP 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ----QGQRPGGRRGAG-- 411
Q P P+ Q + G + A P P ++ Q ++ G RGA
Sbjct: 411 QVAPVRTAPRWSANAQMRPNAGNQNVAANAPAGGYPAMTAAHVANNQYRQAGNVRGANQQ 470
Query: 412 -------------------PV--QQT---QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF 447
P+ QQT Q P+ P + Y ++M++ P
Sbjct: 471 APNAQSAQANSAAMRNAARPITGQQTAANMQTRPVAPQLAAGQARTPNYKFTQSMRN-PQ 529
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
+ PV A I + GQ P+T ++ LA A P +Q+ +LGE L+PL+E
Sbjct: 530 VPQPVPIPAQPVAQQAVIVK-----GQE-PLT--TSMLAAAQPAEQKQMLGERLFPLIEL 581
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ + A K+TGMLLE+D +E+LH+LE E+L AK EA+ VL++
Sbjct: 582 MYPNLAGKITGMLLEIDNSELLHMLEHKESLNAKAEEAVAVLQA 625
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 164/290 (56%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N I + + + +R+ K+ NVF+KNLD+ ++ + F +G I
Sbjct: 62 TMNFDPIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G+SK +GFV+FE + A ++E +NG ++++ YVG+ + ERE+EL
Sbjct: 118 SCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKEL-- 175
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E F N+Y+KN G+ + +E L+++F +FG ITS +VM G S+G GF
Sbjct: 176 ------GEKAKLF--TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVM-TKDGKSRGFGF 226
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF PE+A A+ ++NGK + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 227 VAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLK 276
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/565 (44%), Positives = 342/565 (60%), Gaps = 49/565 (8%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + +S RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG+IL
Sbjct: 104 RALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCK+ TD +G+S+GF FV + E+A AI +NGML+NDK+V+VGH + K+ER +
Sbjct: 164 SCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ +F NV++KN+D TD + + + +G S + RD G SK FGFVN+E+ + A
Sbjct: 224 LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESAR 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ Y G+AQ KSERE ELK E+ E K G+NLYIKNL D
Sbjct: 284 KAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEW 343
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F FGTITS KVMRD SG+S+G GFV +S+P+EA++A++EMNGKMI +KPLY
Sbjct: 344 DDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLY 403
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR L++Q +Q M + PG G Q +YG PP
Sbjct: 404 VALAQRKDVRRQALESQIAQRAQQRM------QYGTGFPGMQGYMGQPMYG------YPP 451
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP--IMP 424
G+G Q +PGM P PM + P Q RP QPLP +
Sbjct: 452 MPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQSRPR-------FNPNGQPLPGGVPA 499
Query: 425 HQMPPR-------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
+ MPP+ G+ R P G + P G + P PV G+P G MP
Sbjct: 500 YGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSMPRGGQMP 558
Query: 478 ITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 524
A LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLEMD
Sbjct: 559 ARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMD 618
Query: 525 QTEVLHLLESPEALKAKVAEAMEVL 549
E+LHL+ES AL+ KV EA+ VL
Sbjct: 619 NAELLHLVESQPALQEKVDEALRVL 643
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 49 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + +Q+ + A+++T QG N++IKNL SID++ L
Sbjct: 109 LNYSLIKGQSCRIMWSQR------------DPALRKT---GQG-NIFIKNLDQSIDNKAL 152
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 153 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 212
Query: 312 RKEERRAR---LQAQFSQM 327
K+ER ++ L+AQF+ +
Sbjct: 213 GKKERLSKVEELRAQFTNV 231
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/577 (45%), Positives = 358/577 (62%), Gaps = 44/577 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKS+ FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NG + + + +VG+AQKK+ER+ ELK +FE +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ +A ++P + P+ G PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRIAGMRAMPANTIINQFQPTS-------GYFMPA 411
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ Q Y P P P + G QG P R GP +Q P
Sbjct: 412 VPQAQNRTTY---YAPNQLAQMRPNPRWQQQGGRGGFQGM-PNTLRQPGPRGNMRQMTPN 467
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPVDMGAGIPRRDASVGQPM----- 476
Q PRG A + M P MG G P G+ + V QP+
Sbjct: 468 SSSQ-GPRGSA------QTMAPRP-SMGVPGPRNVTPYKYATGVRNPNPQVVQPIALQQP 519
Query: 477 --------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 528
P+T + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+
Sbjct: 520 AVHVQGQEPLT--PSMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSEL 577
Query: 529 LHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
LH+LES E+L++KV EA+ VL++ QA A Q A
Sbjct: 578 LHMLESHESLRSKVEEAVAVLQA---HQAKKDATQKA 611
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L I + L E FS G + S +V RD + S G +V FS P +A RAL
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 72 MNFDVVKGKPIRIMWSQR 89
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/583 (43%), Positives = 358/583 (61%), Gaps = 48/583 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+R+SG GNIF+KNLDKSI++K L+DT S+FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NG L+ND++VFVG F ++ERE +
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 ARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQQF 354
LYVA+AQRKEER+A L Q+ Q +R V P + P P P G P +
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAVPQTQNRAA 421
Query: 355 LYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
Y + A + P + Q Q G+RPA +P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPCWTAQGARPHPFQNKPGGIRPAAPRLP-FSTMRPTSSQVPRVMSTQ 480
Query: 408 RGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVP 458
R A QT P P + PR Y+Y G RN Q
Sbjct: 481 RVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQH------------- 524
Query: 459 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
++ + + ++V T ++ LA+A P++Q+ +LGE L+P ++ + A K+TG
Sbjct: 525 LNAQPQVTMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITG 584
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
MLLE+D +E+LH+LESPE+L +KV EA+ VL++ ++A A
Sbjct: 585 MLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKEATQKA 627
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + +S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A+ A+D +N +I K V + +R+ ++ N+FVKNLD+S ++ L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAKAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P++A RAL MN +I KP+ + +QR
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/592 (43%), Positives = 354/592 (59%), Gaps = 53/592 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+G+GFV FE E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ F +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV----------------PPRMPM 342
KPLYVA+AQRKEER+A L Q+ Q MR + GP + PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLGSFQQPANYFLSAMPQPPNRTF 419
Query: 343 YPPGPSG----LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 398
Y P P Q + PP PP Q + + VP V+Q
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRRMSSNISTMKQASTQVPRVAQH 479
Query: 399 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPV 457
Q G + AG Q P M MP Y+Y G RN+Q ++
Sbjct: 480 SQRVANIGTQTAGARAQVN---PSMMRTMP----HYKYSCGVRNVQPIVSSTHLQQVMEP 532
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
V M GQ P+TA + LA A ++Q+ +LGE +YP++ ++ A K+T
Sbjct: 533 AVLMQ----------GQE-PLTA--SLLAGAPLQEQKQMLGERIYPVIHEMHPTLAGKIT 579
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 569
GMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENAQKSAQPSL 628
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LYI +L + + L E FS G I S +V RD + S ++ F P +A RAL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/564 (44%), Positives = 340/564 (60%), Gaps = 43/564 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQNAI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NG++ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR + +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQAPY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
YG PP + P R P VV +RP PV
Sbjct: 421 YGSGPP--------------IQPAPRWTAQPPRPSCASVVRPAAMSRRP-----LTPVGS 461
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS-MLPVPVDMGAGIPRRDASVGQ 474
++Q +PH +P H R P G + P+ + R V +
Sbjct: 462 SRQVSTHVPHLVP---HTQRVANIGTQTTGPSMTGCSTPSRPLLTHTYSTPAHRTDRVQE 518
Query: 475 PM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
P P+TA + LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E
Sbjct: 519 PAVHVPGQEPLTA--SMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSE 576
Query: 528 VLHLLESPEALKAKVAEAMEVLRS 551
+L +LESPE+L AKV EA+ VL++
Sbjct: 577 LLLMLESPESLNAKVEEALAVLQA 600
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/558 (45%), Positives = 341/558 (61%), Gaps = 31/558 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQNAI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL + L+ +F ++G I S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ F+ +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR + +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQPPAQSPY 420
Query: 356 YGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAP-MPNFFVPVVSQGQQGQRPGGRRGAGPV 413
Y PP PP+ + +RPA P+ VP+ S Q PV
Sbjct: 421 YASGPPVQPPPRWTAQPPRPSCASVVRPAAVSRRPS--VPISSSRQVSIHV-----PRPV 473
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
QTQ I P P G + S P + G +PR++
Sbjct: 474 PQTQGVANIGTQTTGPGVMGCATPSGPLLTHKCCSATHNS--PRVQEPGVRVPRQE---- 527
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LE
Sbjct: 528 ---PLTA--SVLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLLMLE 582
Query: 534 SPEALKAKVAEAMEVLRS 551
SPE+L AKV EA+ VL++
Sbjct: 583 SPESLSAKVEEALAVLQA 600
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/655 (40%), Positives = 363/655 (55%), Gaps = 126/655 (19%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 106 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 165
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 166 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 225
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+D TDE+ +++FG+YG ITSA + RD GKS+ FGFVN+ + +A
Sbjct: 226 MKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQ 285
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LN K F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 286 SAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDV 345
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGI--------------------------------- 273
DD+KL+ELFS FGTITS KVMRD G+
Sbjct: 346 DDDKLRELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKAEDE 405
Query: 274 ---------------SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318
SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R++
Sbjct: 406 EKTETKKPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKS 465
Query: 319 RLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQ 373
+L+A + + P+ M P G GQQ FL A Q G G+
Sbjct: 466 QLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFLPANA------GQRGLGFA 519
Query: 374 QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP------GGRRGAGPVQQT----QQPLPIM 423
Q PGM AG P G+ GQ P GGR GP QQ Q +PI
Sbjct: 520 PQ--PGMVMAGIP----------GGRPGQYPGGFPQQGGRGIGGPNQQIPQNFGQGIPIG 567
Query: 424 PHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP--------------- 466
Q P G + YP M F GAG VP GIP
Sbjct: 568 AMQAGPGGIPNGMAYP---QMAQVQFGRGAGGRGQVP----QGIPPNVGGPRGGPGFGQG 620
Query: 467 -------------RRDASVGQPM-----PITALSTALANASPEQQRTLLGESLYPLVEQL 508
++ G P+ P + L+ A P+QQ+ +LGE+LYP ++
Sbjct: 621 RGGMPPRPGPGGRGQNVPAGAPVAPEGAPGSLTLQTLSAAPPQQQKQMLGEALYPKIQAQ 680
Query: 509 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN-PAD 562
+ + A K+TGMLLEMD E+L L++ AL+AKV EA+ V + + ++ P+D
Sbjct: 681 QPELAGKITGMLLEMDNAELLGLIDDESALRAKVDEALHVYDEYMKNKGSDEPSD 735
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 159/300 (53%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI + + +R+ KT NVF+KNLD + ++ L
Sbjct: 102 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 217
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KN+ + DE+ +ELF ++G ITS + R
Sbjct: 218 DRQSKFEEMKANF-------------TNVYVKNIDPEVTDEEFRELFGKYGDITSATISR 264
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D SG S+G GFV + + A A+ E+N K S+ LYV AQ+K ER L+ Q+ R
Sbjct: 265 DDSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAAR 324
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/575 (43%), Positives = 349/575 (60%), Gaps = 43/575 (7%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + N++ RIM+S RDP++RK+G GN+FIKNLD++ID+KALHDTF +FGN+L
Sbjct: 98 RALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVL 157
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G+SKG+GFV +E E+A NAI +NGML+NDK+V+VGH + ++ER++
Sbjct: 158 SCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDE 217
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K +F N+++KNLD T E+ ++F YG +TS++V D +GKSK FGFVN+E ++A
Sbjct: 218 MKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQ 277
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ L+ ++ +V +AQKK+ERE EL+ +EQA E + K+QG+NLYIKNL D
Sbjct: 278 RAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDF 337
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ F FG ITSCKVMRD G SKG GFV FS+P+EA++A+AEMN KMI +KPLY
Sbjct: 338 DDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLY 397
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP-MYPPGPSGLGQQFLYGQAPPAIIP 365
V++AQR+E RR +L++Q +Q + M + +P Y GP Y P
Sbjct: 398 VSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGVPGGYINGP------MYYPPGPGFPPQ 451
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFV----PVVSQGQQGQRPGGRRGAGPVQQTQQPL- 420
+ GY Q PGM P PN V PV QG +P G G P + P+
Sbjct: 452 GRGMMGYGQ---PGMMPPRIRYPNGQVPSMPPVPGPYGQGPQPYGMPGYPPRGAPRPPVA 508
Query: 421 ------PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML------------------P 456
P P PR + P G + P AGS P
Sbjct: 509 RGPGSSPTHPSVPMPRANG-PAPNGGAARPAPQGAPAGSRAPPPGAPAPGRAPQPAYNKP 567
Query: 457 VPVDMGAGIPRRDASVGQPMPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
GA + + A+ Q + L+ LA ASP +Q+ +LGE +Y + + + A K
Sbjct: 568 QARPQGAPVTAQPAAAPQQSSLPNLTADQLAAASPMEQKQMLGEVIYMRIVPSQPELAGK 627
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
+TGMLLEMD E+L LL+S EA+ AKV EA VL+
Sbjct: 628 ITGMLLEMDNNELLALLDSEEAMNAKVQEANTVLQ 662
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 43 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 102
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 103 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NVFIKNLDEAIDNKAL 146
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 147 HDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHI 206
Query: 312 RKEERRARL---QAQFSQM 327
++ER+++L +AQF+ +
Sbjct: 207 SRKERQSKLDEMKAQFTNL 225
>gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major]
Length = 314
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 242/316 (76%), Positives = 275/316 (87%), Gaps = 2/316 (0%)
Query: 260 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
TITSCKVMRDPSGIS+GSGFVAFSTPEE++RAL+EMNGKM++SKPLYVA+AQRKEERRAR
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 320 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 379
LQAQFSQMRPVAM PS+ PRMPMYPPG G+GQQ YGQ PPA+IP QAGFGYQQQLVPG
Sbjct: 61 LQAQFSQMRPVAMPPSIAPRMPMYPPGAPGIGQQLFYGQGPPAMIPSQAGFGYQQQLVPG 120
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG 439
MRP G PMPNFF+P+V QGQQGQRPGGRRG GP+QQ QQP+P+M QM PRG YR+P G
Sbjct: 121 MRPGGTPMPNFFMPMVQQGQQGQRPGGRRGGGPMQQAQQPVPVMQQQMMPRGRMYRFPPG 180
Query: 440 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 499
RN+ D P M G M VP DM +PR A++ QPMP+TAL++ALANA+PEQQRT+LGE
Sbjct: 181 RNVPDVP--MTGGGMFSVPYDMTGMLPRDAAAIPQPMPVTALASALANATPEQQRTMLGE 238
Query: 500 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN 559
+LYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESP+ALK+KV EAMEVLR+V QQ N+
Sbjct: 239 NLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKSKVNEAMEVLRNVQQQGNNS 298
Query: 560 PADQLASLSLNENLVS 575
PADQLASLSLN+NLVS
Sbjct: 299 PADQLASLSLNDNLVS 314
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
TITS VMRD G S+ GFV F +++A+A+ +NGK + YV AQ+K ER
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 217 LKGQFEQ 223
L+ QF Q
Sbjct: 61 LQAQFSQ 67
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
I SCK+ D SG S+G GFV F E + A+ ++NG ++ K ++V RK+ER
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEER 57
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/586 (43%), Positives = 355/586 (60%), Gaps = 52/586 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+R+SG GN+FIKNL+K+ID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ +TK F NV++KN + D+ L +FG +G + S VM D GKSK FGFV+FE
Sbjct: 182 ELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + + YVG AQKK +R ELK +FEQ ++ ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A++EMNG+++ +
Sbjct: 302 DDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLG------QQFL 355
KPLYVA+AQRKEER+A L Q+ Q M V GP+ + Y P PSG Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYIQRMASVRSGPN--SLINAYQPAPSGYSVAAVPQTQNC 418
Query: 356 YGQAPPAIIPPQAGFGYQQQ--------LVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
P I+ P + Q V G AP +F S Q +
Sbjct: 419 APCCPSQIVQPSPSTRWTAQGARPHPFPNVSGASHPAAPKSSFTTVRPSSSHVPQVMAAQ 478
Query: 408 RGAGPVQQT--QQP-LPIMPHQMPPRG-HAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMG 462
R QT Q+P L P P R Y+Y G RN Q +
Sbjct: 479 RITNTSAQTTGQRPALASSPATTPVRSIPQYKYATGVRNSQQH---------------LN 523
Query: 463 AGIPRRDASVGQ---PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
A + ++ + Q P + L TA P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 524 AQLVQQPSVCIQGQEPWTASTLGTA-----PQEQKQMLGERLFPLIQAMHPTLAGKITGM 578
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
LLE+D +E LH+L+SPE+L ++ EA+ L++ QAN A + A
Sbjct: 579 LLEIDNSEPLHMLDSPESLCSRAQEAVSALQA---HQANEAAQKAA 621
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FSS G ILS ++ D + +S G+ V FE A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K V + +R+ ++ NVF+KNL+++ ++ L F +G I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGT 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ ++ N+YIKN GD +DD+ L LF FG + S KVM D G SKG GF
Sbjct: 186 RTKEFT----------NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGF 235
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
V+F E+A +A+ EMNGK + K +YV AQ+K +R L+ +F Q+
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQV 283
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/634 (42%), Positives = 357/634 (56%), Gaps = 105/634 (16%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+AQNAI +NGML+NDK+VFVGH + K++R++
Sbjct: 171 SCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKN+D+ TT+E+ + +F ++G ITSA + RD + GKS+ FGFVNF + D+A
Sbjct: 231 MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNA 290
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVEALN K F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 291 AAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 350
Query: 246 IDDEKLKELFSEFGTITSCKVMRD------------------------------------ 269
IDDEKL+ELFS +GTITS KVMRD
Sbjct: 351 IDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAE 410
Query: 270 -----------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQR
Sbjct: 411 NKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQR 470
Query: 313 KEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ-A 368
K+ RR++L+A + +R + P P YG IP Q
Sbjct: 471 KDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPA-------VFYGPGQQNFIPNQRG 523
Query: 369 GFGYQQ--QLVPGMRPAGAPM---------------PNFFVPVVSQGQQGQR-PGGRRGA 410
G +QQ ++PGM P G PN +P + G Q P G +GA
Sbjct: 524 GMPFQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPMGMQGA 582
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQDFPFDMGAGSML--PVPVDMGAGIPR 467
G P M P G + P G+ M MG G +PV G G P
Sbjct: 583 GIPNGLN--YPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPG 640
Query: 468 RDASVGQPMPITALSTALANASPE-------------QQRTLLGESLYPLVEQLERDAAA 514
+ A GQ P A+ NASP QQ+ +LGE++YP ++ + + A
Sbjct: 641 Q-AGRGQGAPAQAVGQRDENASPSGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAG 699
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 700 KITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 295 MNGKMIVSKPLYVAVAQR 312
+N +I +P + +QR
Sbjct: 116 LNYTLIKGRPCRIMWSQR 133
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/634 (42%), Positives = 357/634 (56%), Gaps = 105/634 (16%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+AQNAI +NGML+NDK+VFVGH + K++R++
Sbjct: 171 SCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKN+D+ TT+E+ + +F ++G ITSA + RD + GKS+ FGFVNF + D+A
Sbjct: 231 MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNA 290
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVEALN K F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 291 AAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 350
Query: 246 IDDEKLKELFSEFGTITSCKVMRD------------------------------------ 269
IDDEKL+ELFS +GTITS KVMRD
Sbjct: 351 IDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAE 410
Query: 270 -----------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQR
Sbjct: 411 NKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQR 470
Query: 313 KEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ-A 368
K+ RR++L+A + +R + P P YG IP Q
Sbjct: 471 KDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPA-------VFYGPGQQNFIPNQRG 523
Query: 369 GFGYQQ--QLVPGMRPAGAPM---------------PNFFVPVVSQGQQGQR-PGGRRGA 410
G +QQ ++PGM P G PN +P + G Q P G +GA
Sbjct: 524 GMPFQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPMGMQGA 582
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQDFPFDMGAGSML--PVPVDMGAGIPR 467
G P M P G + P G+ M MG G +PV G G P
Sbjct: 583 GIPNGLN--YPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPG 640
Query: 468 RDASVGQPMPITALSTALANASPE-------------QQRTLLGESLYPLVEQLERDAAA 514
+ A GQ P A+ NASP QQ+ +LGE++YP ++ + + A
Sbjct: 641 Q-AGRGQGAPAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAG 699
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 700 KITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 295 MNGKMIVSKPLYVAVAQR 312
+N +I +P + +QR
Sbjct: 116 LNYTLIKGRPCRIMWSQR 133
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/634 (42%), Positives = 357/634 (56%), Gaps = 105/634 (16%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+AQNAI +NGML+NDK+VFVGH + K++R++
Sbjct: 171 SCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKN+D+ TT+E+ + +F ++G ITSA + RD + GKS+ FGFVNF + D+A
Sbjct: 231 MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNA 290
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVEALN K F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 291 AAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 350
Query: 246 IDDEKLKELFSEFGTITSCKVMRD------------------------------------ 269
IDDEKL+ELFS +GTITS KVMRD
Sbjct: 351 IDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAE 410
Query: 270 -----------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQR
Sbjct: 411 NKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQR 470
Query: 313 KEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ-A 368
K+ RR++L+A + +R + P P YG IP Q
Sbjct: 471 KDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPA-------VFYGPGQQNFIPNQRG 523
Query: 369 GFGYQQ--QLVPGMRPAGAPM---------------PNFFVPVVSQGQQGQR-PGGRRGA 410
G +QQ ++PGM P G PN +P + G Q P G +GA
Sbjct: 524 GMPFQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPMGMQGA 582
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQDFPFDMGAGSML--PVPVDMGAGIPR 467
G P M P G + P G+ M MG G +PV G G P
Sbjct: 583 GIPNGLN--YPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPG 640
Query: 468 RDASVGQPMPITALSTALANASPE-------------QQRTLLGESLYPLVEQLERDAAA 514
+ A GQ P A+ NASP QQ+ +LGE++YP ++ + + A
Sbjct: 641 Q-AGRGQGAPAQAVGQRDENASPSGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAG 699
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 700 KITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 295 MNGKMIVSKPLYVAVAQR 312
+N +I +P + +QR
Sbjct: 116 LNYTLIKGRPCRIMWSQR 133
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/558 (44%), Positives = 343/558 (61%), Gaps = 29/558 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+++F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ--GQRPGGRRGAGPV 413
YG P + P Q + Q RP+ A M V R + V
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
TQ+ I P G P GR + A S V + IP ++
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAHSTYRVQ-EPAVHIPGQE---- 529
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LE
Sbjct: 530 ---PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLE 584
Query: 534 SPEALKAKVAEAMEVLRS 551
SPE+L AK+ EA+ VL++
Sbjct: 585 SPESLHAKIDEAVAVLQA 602
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/594 (43%), Positives = 355/594 (59%), Gaps = 57/594 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ LK+IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ Q MR + +G P P P + F
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAF- 419
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-------------------VVS 396
Y P A + P + Q P +P AP+ P V
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQPP-APLMRAVPPRRMHSNISTMKQASTQVPRVPL 478
Query: 397 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSML 455
Q Q+ G + Q + MPH Y+Y G RN+Q +L
Sbjct: 479 QSQRVANIGTQTAGARAQVNASIMRAMPH--------YKYSCGVRNVQPIGSSAHLQQVL 530
Query: 456 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
V M GQ P+TA + LA A ++Q+ +LGE +YPL+ ++ A K
Sbjct: 531 EPAVLMQ----------GQE-PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGK 577
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 569
+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 578 ITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKESAPKSAPQSL 628
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M T ++ +LYI +L + + L E FS G I S +V RD + S G ++ F
Sbjct: 1 MNATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN ++I +P+ + +QR
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRIMWSQR 89
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/564 (44%), Positives = 338/564 (59%), Gaps = 45/564 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQNAI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NG++ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPV---AMGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR + +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPVLGSFQQPASYFLPAVPQPPAQAQY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
YG PP I P + Q RP+ +P RR PV
Sbjct: 421 YGSGPP--IQPAPRWTAQPP-----RPSCDRLPARV--------------SRRPLAPVGS 459
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS--------MLPVPVDMGAGIPR 467
++Q MPH +P H R P G + P +
Sbjct: 460 SRQLSTHMPHLVP---HTQRVANIGTQTIGPSVTGCSTPSRPLLTHKYSTPAHCTDRVQE 516
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
V P+TA + LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E
Sbjct: 517 PAVCVLGQEPLTA--STLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSE 574
Query: 528 VLHLLESPEALKAKVAEAMEVLRS 551
+L +LESPE+L AKV EA+ VL++
Sbjct: 575 LLLMLESPESLNAKVEEALAVLQA 598
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/576 (44%), Positives = 341/576 (59%), Gaps = 57/576 (9%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + N+ RIM+S RDP++RK+G GNIFIKNLD ID+KALHDTF++FGNIL
Sbjct: 113 RALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNIL 172
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA-- 126
SCK+ATD +G S+GF FV +E E+A AI +NGML+NDK+V+VGH + K+ER++
Sbjct: 173 SCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEE 232
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ KF N+F+KNL+ T +DL+ +F +G I SA + DG SK F FVN+ D A
Sbjct: 233 QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAK 292
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ YVG+AQK++ER++EL+ E+ E K G+NLY+KN+ D
Sbjct: 293 KAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEW 352
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F GTITS KVMRD G S+G GFV FS P+EA+RA+ EMNGKMI +KPLY
Sbjct: 353 DDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLY 412
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
V++AQ+KE RR L++Q Q + + +GLG Y QAP
Sbjct: 413 VSLAQKKEVRRQALESQMQQRNAQRLQYAA----------ANGLGGPQGYMQAP------ 456
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP--GGRRGAGPVQ-QTQQPLPIM 423
P M P G PM VV G G P G R G P Q P+P+
Sbjct: 457 --------MYYPPMGPYGGPMMPVRGGVV--GYPGAPPMMGARPGRYPPSGQPGAPVPM- 505
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV-------PVDMGAGIPR--------- 467
MPP G YP M ++P + P P G+PR
Sbjct: 506 -GYMPPGGAGGNYP---GMPNYPVRPAGNARPPTAARPNGSPSGAQQGLPRGQVPARPQG 561
Query: 468 --RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
A+ GQP +TA ALA ASP +QR +LGE++YPL+ + + + A K+TGMLLEMD
Sbjct: 562 DGAQAAAGQPR-LTA--QALARASPGEQRQMLGEAIYPLIHESQPELAGKITGMLLEMDN 618
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
E+LHL+ESP AL KV EA+ VL + PA
Sbjct: 619 AELLHLVESPAALTEKVDEALRVLEDWGKNDEEKPA 654
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 58 SLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + + Q + A+++T QG N++IKNL D ID++ L
Sbjct: 118 LNYSLIKNRPCRI------------MWSQRDPALRKT---GQG-NIFIKNLDDKIDNKAL 161
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D +G S+G FV + T E A A+ +NG ++ K +YV
Sbjct: 162 HDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHI 221
Query: 312 RKEERRARLQAQ 323
K+ER+++++ Q
Sbjct: 222 SKKERQSKVEEQ 233
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/583 (43%), Positives = 358/583 (61%), Gaps = 48/583 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+R+SG GNIF+KNLDKSI++K L+DT S+FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NG L+ND++VFVG F ++ERE +
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + + YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQQF 354
LYVA+AQRKEER+A L ++ Q +R V P + P P P G P +
Sbjct: 363 LYVALAQRKEERQAHLTNEYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAVPQTQNRAA 421
Query: 355 LYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
Y + A + P + Q Q G+RPA +P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPCWTAQGARPHPFQNKPGGIRPAAPRLP-FSTMRPTSSQVPRVMSTQ 480
Query: 408 RGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVP 458
R A QT P P + PR Y+Y G RN Q
Sbjct: 481 RVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQH------------- 524
Query: 459 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
++ + + ++V T ++ LA+A P++Q+ +LGE L+P ++ + A K+TG
Sbjct: 525 LNAQPQVTMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITG 584
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
MLLE+D +E+LH+LESP++L++KV EA+ VL++ ++A A
Sbjct: 585 MLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQAKEATQKA 627
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + +S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A+ A+D +N +I K V + +R+ ++ N+FVKNLD+S ++ L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAKAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMK 284
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P++A RAL MN +I KP+ + +QR
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/569 (44%), Positives = 348/569 (61%), Gaps = 35/569 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ER
Sbjct: 123 GNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAA 181
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E A +F N++VKNL ++ L+ +F ++G + S VMRD G+S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y +AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTEGSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAG---- 411
YG P + P Q + Q RP+ A M PV+ + R+ +
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---PPRPSCASMVR--PPVMPRCPPAHISSVRQASTQVPR 473
Query: 412 PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS 471
V TQ+ I P G P GR + + A S V + IP +
Sbjct: 474 TVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPYKCSSAAHSTDQVQ-EPAVHIPGHE-- 529
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 531
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +
Sbjct: 530 -----PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLM 582
Query: 532 LESPEALKAKVAEAMEVLRSVAQQQANNP 560
LESPE+L AK+ EA+ VL+ A Q P
Sbjct: 583 LESPESLHAKIDEAVAVLQ--AHQAVEQP 609
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G+I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/558 (44%), Positives = 342/558 (61%), Gaps = 29/558 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ--GQRPGGRRGAGPV 413
YG P + P Q + Q RP+ A M V R + V
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
TQ+ I P G P GR + A S V + IP ++
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAHSTYRVQ-EPAVHIPGQE---- 529
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LE
Sbjct: 530 ---PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLE 584
Query: 534 SPEALKAKVAEAMEVLRS 551
SPE+L AK+ EA+ VL++
Sbjct: 585 SPESLHAKIDEAVAVLQA 602
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/584 (44%), Positives = 348/584 (59%), Gaps = 67/584 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G S+G+GFV FE E+A AI +NGML+ND++VFVG+F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E ++E L++ F +G S VM D G+SK FGFVNFE
Sbjct: 182 EYGAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DA KAVE +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E V ++QG+NLY+KNL
Sbjct: 242 QDAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MR-------------PVAMGPSVP---PRMPM 342
KPLYVA+AQRKEER+A L Q+ Q +R P PS+P PR P
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATLRTLPGPLFCSFQPPPGYFVPSIPQPQPRTPY 420
Query: 343 YP--------PGPSGLGQQFL----YGQAPPAI---IPPQAGFGYQQQLVPGMRPAGAPM 387
Y P P GQ Y A P + PP+ + MR A +
Sbjct: 421 YNASPVAPVRPAPRWNGQHSRPPSSYHTATPVLRTNAPPRRILNN----ISTMRQASTQV 476
Query: 388 PNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFP 446
P VP P +R A QT P Y+Y RN+Q
Sbjct: 477 PR--VP----------PNAQRMANIGTQTVSVRAPSPPTFSRGISQYKYSSAVRNIQPL- 523
Query: 447 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 506
+M P+P+ + + P+TA + LA A P++Q+ +LGE LYPL+
Sbjct: 524 -----NAMPPIPMQQ---VVEPAVHIHGQEPLTA--SMLAAAPPQEQKQILGERLYPLIH 573
Query: 507 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
+ A K+TGMLLE+D +E+L +LESPE+L +K+ EA+ VL+
Sbjct: 574 AMHPFLAGKITGMLLEIDNSELLLMLESPESLHSKIEEAVAVLQ 617
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/594 (43%), Positives = 356/594 (59%), Gaps = 71/594 (11%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S DPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE +
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ ++ YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG-------------- 346
LYVA+AQRKEER+A L ++ Q +R V P + P P P G
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAVPQTQNHAA 421
Query: 347 ---PSGLGQ-------------QFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMP 388
PS + Q + P AI P P+ F MRPA + +P
Sbjct: 422 YYPPSQIAQLRPSPCWTAQGARPHPFQNKPSAICPAAPRVPFS-------TMRPASSQVP 474
Query: 389 NFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPF 447
V+S + G P P + + PR Y+Y G RN Q
Sbjct: 475 R----VMSTQRVANTSTQTVGPRPAAAAAAATPAV--RTVPR---YKYAAGVRNPQQH-- 523
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
++ + + +V T ++ LA+A P++Q+ +LGE L+PL+E
Sbjct: 524 -----------LNAQPEVTMQQPAVHVQGQETLTASMLASAPPQKQKQMLGERLFPLIEA 572
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ ++A A
Sbjct: 573 MRPTLAGKITGMLLEIDNSELLHMLESPESLGSKVDEAVAVLQAHQAKEATQKA 626
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 176/298 (59%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + +S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K V + + Q ++ K+ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRI---MWSQHDPSLR-KSGVGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAKAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/564 (44%), Positives = 343/564 (60%), Gaps = 41/564 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
YG P + P Q + Q P P+ RR +
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---------PPRPS------CASVVRPPVVPRRPPAHISS 463
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS----MLPVPVDMGAGIPRR--D 469
+Q +PH +P H R P +G + +LP A R +
Sbjct: 464 VRQASTQVPHTVP---HTQRVANIGTQTTGPSGVGCCTPGRPLLPYKCSSAAHSTYRVQE 520
Query: 470 ASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
+V P P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E
Sbjct: 521 PAVHIPGQEPLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSE 578
Query: 528 VLHLLESPEALKAKVAEAMEVLRS 551
+L +LESPE+L AK+ EA+ VL++
Sbjct: 579 LLLMLESPESLHAKIDEAVAVLQA 602
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/590 (42%), Positives = 346/590 (58%), Gaps = 71/590 (12%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + N++ RIM+S RDP++RK+G GN+FIKNLD++ID+KALHDTF +FGN+L
Sbjct: 98 RALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVL 157
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G+SKG+GFV +E E+A NAI +NGML+NDK+V+VGH + ++ER++
Sbjct: 158 SCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDE 217
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K +F N+++KNLD T E+ ++F YG +TS++V D +GKSK FGFVN+E ++A
Sbjct: 218 MKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQ 277
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ L+ ++ +V +AQKK+ERE EL+ +EQA E + K+QG+NLYIKNL D
Sbjct: 278 RAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDF 337
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ F FG ITSCKVMRD G SKG GFV FS+P+EA++A+AEMN KMI +KPLY
Sbjct: 338 DDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLY 397
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP-MYPPGP----------------SG 349
V++AQR+E RR +L++Q +Q + M + +P Y GP G
Sbjct: 398 VSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQGRGMMG 457
Query: 350 LGQQFLYGQAPPAI------------IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 397
GQ G PP I +P G G Q +PG P GAP P S
Sbjct: 458 YGQP---GMMPPRIRYPNGQVPSMPPVPGPYGQGPQPYGMPGYPPRGAPRPPVARGPGSS 514
Query: 398 GQQGQRPGGR-RGAGPVQQTQQPLPIMPHQMPPRGH----------------AYRYPLGR 440
P R G P +P P Q P G AY P R
Sbjct: 515 PTHPSVPMPRANGPAPNGGAARPAP----QGAPTGSRAPPPGAPAPGRAPQPAYNKPQAR 570
Query: 441 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 500
Q P + VP +G+P A LA ASP +Q+ +LGE
Sbjct: 571 P-QGAPVTAQPAA---VPAPQQSGLPNLTAD------------QLAAASPMEQKQMLGEV 614
Query: 501 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
+Y + + + A K+TGMLLEMD E+L LL+S EA+ AKV EA VL+
Sbjct: 615 IYMRIVPSQPELAGKITGMLLEMDNNELLALLDSEEAMNAKVQEANTVLQ 664
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 43 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 102
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 103 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NVFIKNLDEAIDNKAL 146
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 147 HDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHI 206
Query: 312 RKEERRARL---QAQFSQM 327
++ER+++L +AQF+ +
Sbjct: 207 SRKERQSKLDEMKAQFTNL 225
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/575 (44%), Positives = 352/575 (61%), Gaps = 39/575 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S DPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE +
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ ++ YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPPRMPMYPPGPSGLGQQFLYGQAPP 361
LYVA+AQRKEER+A L ++ Q M V P+ PP P Y +
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQI 422
Query: 362 AIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ 414
A + P + Q Q +RP GAP F + Q + +R A
Sbjct: 423 ARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFSTMRPASSQVPRVMSTQRVANTST 481
Query: 415 QTQQPLPIMPH-------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIP 466
QT P P + PR Y+Y G RN Q ++ +
Sbjct: 482 QTVGPRPAAAAAAATPAVRTVPR---YKYAAGVRNPQQH-------------LNAQPEVT 525
Query: 467 RRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ +V T ++ LA+A P++Q+ +LGE L+PL+E + A K+TGMLLE+D +
Sbjct: 526 MQQPAVHVQGQETLTASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGMLLEIDNS 585
Query: 527 EVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
E+LH+LESPE+L +KV EA+ VL++ ++A A
Sbjct: 586 ELLHMLESPESLGSKVDEAVAVLQAHQAKEATQKA 620
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 176/298 (59%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + +S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K V + + Q ++ K+ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRI---MWSQHDPSLR-KSGVGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAKAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/583 (44%), Positives = 361/583 (61%), Gaps = 50/583 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A R L+ +N + K +RIM+S RDPS+RKSG GNIFIKNL+KSID+KAL+ TFS+
Sbjct: 367 LADAERVLETMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSA 426
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ +D +G SKG+GFV FEN+++A AI+K+NG+ +N+ +V+VG F ++ERE
Sbjct: 427 FGNILSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERE 485
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
A +F NV++KN E ++ L ++FG++G S VM D GKSK FGFV++E
Sbjct: 486 LELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEK 545
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA +AV+ +NGK+F+ + YVG+AQKK ER+ ELK FEQ +E ++QG+NLY+KN
Sbjct: 546 HEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKN 605
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ FS FGTITS KVM + G S+G GFV FS PEEA++A++EMNGK++
Sbjct: 606 LDDSIDDERLRKAFSPFGTITSAKVMME-GGHSRGFGFVCFSAPEEAAKAVSEMNGKLVA 664
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ-------MRPVAMGPSVPP---RMPMYP-PGPSGL 350
+KPLYVA+AQRK +R+ L Q+ Q M P PP R M P P P
Sbjct: 665 TKPLYVALAQRKRDRQVHLTNQYMQRMASFQAMSNPVFSPYQPPPTSRYFMTPLPQPQSR 724
Query: 351 GQQFLYGQ------APPAIIPPQAGFGYQQQLVPG-MRPAG---APMPNFFVPVVSQGQQ 400
+ YGQ +PP P F + Q VPG MRP G AP P F PV S
Sbjct: 725 PAYYPYGQIPQFRPSPPHWAVPGGRF-HPFQTVPGVMRPRGPAPAPAPAPFNPVTSS--- 780
Query: 401 GQRPGGRRGAGPVQQTQQPLPIM--PHQMPPRGHAYRYPLGRNMQDFPFDMGAGS----M 454
+ PV I+ QM + P R++Q + + G +
Sbjct: 781 ---------SVPVSALMNTQHIVNPSSQMLGPPNPPFMPPMRSVQQYKYAAGVRNPKHLN 831
Query: 455 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
+P+PV P+ P+TA + LA P++Q+ +LGE L+PL++ L A
Sbjct: 832 MPLPVT----TPQPAGLFEFQEPLTA--SMLAATPPQEQKQILGERLFPLIQALNPALAG 885
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
K+TGMLLE+D +E+LH+LESPE+L+AKV EA+ VL + ++A
Sbjct: 886 KITGMLLEIDNSELLHMLESPESLQAKVDEAVAVLEAHQAKEA 928
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V F +A R L
Sbjct: 317 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLET 376
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
MN +I KP+ + +QR R
Sbjct: 377 MNLDVIKGKPVRIMWSQRDPSLR 399
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/591 (42%), Positives = 348/591 (58%), Gaps = 79/591 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQ---------------------LVPGMRPAGAPMPNFFVP- 393
YG P + P Q + Q + +R A +P VP
Sbjct: 421 YGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVMPRRPPAHISSVRQASTQVPR-MVPH 477
Query: 394 ---VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA-YRYPLGRNMQDFPFDM 449
V + G Q PGG P + P++P++ H+ YR
Sbjct: 478 TQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSSAAHSTYRVQ------------ 519
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
+ IP ++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 520 ----------EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVH 560
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 560
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+ A Q P
Sbjct: 561 TQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ--AHQAVEQP 609
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/576 (43%), Positives = 341/576 (59%), Gaps = 57/576 (9%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + N+ RIM+S RDP++RK+G GNIFIKNLD ID+KALHDTF++FGNIL
Sbjct: 113 RALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNIL 172
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA-- 126
SCK+ATD +G S+GF FV +E E+A AI +NGML+NDK+V+VGH + K+ER++
Sbjct: 173 SCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEE 232
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ KF N+F+KNL+ T +DL+ +F +G I SA + DG SK F FVN+ D A
Sbjct: 233 QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAK 292
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ YVG+AQK++ER++EL+ E+ E K G+NLY+KN+ D
Sbjct: 293 KAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEW 352
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F GTITS KVMRD G S+G GFV FS P+EA+RA+ EMNGKMI +KPLY
Sbjct: 353 DDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLY 412
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
V++AQ+KE RR L++Q Q + + +GLG Y QAP
Sbjct: 413 VSLAQKKEVRRQALESQMQQRNAQRLQYAA----------ANGLGGPQGYMQAP------ 456
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP--GGRRGAGPVQ-QTQQPLPIM 423
P M P G PM VV G G P G R G P Q P+P+
Sbjct: 457 --------MYYPPMGPYGGPMMPVRGGVV--GYPGAPPMMGARPGRYPPSGQPGAPVPM- 505
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV-------PVDMGAGIPR--------- 467
MPP G YP M ++P + P P G+PR
Sbjct: 506 -GYMPPGGAGGNYP---GMPNYPVRPAGNARPPTAARPNGSPSGAQQGLPRGQVPARPQG 561
Query: 468 --RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
A+ GQP +TA ALA ASP +Q+ +LGE++YPL+ + + + A K+TGMLLEMD
Sbjct: 562 DGAQAAAGQPR-LTA--QALARASPGEQKQMLGEAIYPLIHESQPELAGKITGMLLEMDN 618
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
E+LHL+ESP AL KV EA+ VL + PA
Sbjct: 619 AELLHLVESPAALTEKVDEALRVLEDWGKNDEEKPA 654
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 58 SLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + + Q + A+++T QG N++IKNL D ID++ L
Sbjct: 118 LNYSLIKNRPCRI------------MWSQRDPALRKT---GQG-NIFIKNLDDKIDNKAL 161
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D +G S+G FV + T E A A+ +NG ++ K +YV
Sbjct: 162 HDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHI 221
Query: 312 RKEERRARLQAQ 323
K+ER+++++ Q
Sbjct: 222 SKKERQSKVEEQ 233
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/587 (43%), Positives = 358/587 (60%), Gaps = 75/587 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A ALD +N+ + + IRIM+S RDP++RKSG GNIFIKN+D SID+KAL+DTFS+F
Sbjct: 63 ADAECALDTMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G SKG+GFV FE +E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERE- 180
Query: 125 VAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
V TK F N+++KN ++ TDE LK+ F +G S VMRD G+S+ FGFVN+ +
Sbjct: 181 VEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAH 240
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA KAV+ +NGK+ + + YVG+AQK+ ER+ ELK +F+Q ++ + ++QG+NLY+KN
Sbjct: 241 HEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKN 300
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ FS +GTITS KVM + +G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 301 LDDSIDDERLRKEFSPYGTITSAKVMTE-AGQSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
+KPLYVA+AQR+EER+A L ++ Q RM PS + Y Q+
Sbjct: 360 TKPLYVALAQRREERKAILTNKYMQ------------RMATLRTMPSPIIDS--YHQSGY 405
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP------GG---RRGAGP 412
+ PQ Y V +R P+P + Q Q+ Q P GG RRG+
Sbjct: 406 YMTVPQVRSFYNHNAVSNVR----PIPRW----PGQPQRPQDPYSSHIVGGSFARRGSTT 457
Query: 413 VQ-----QTQQPLPIMPHQMPP-----------------RGHAYRY------PLGRNMQD 444
+ TQ P I Q R Y+Y PL ++
Sbjct: 458 ITTVKQASTQAPRIIASTQKTNNIGTQTVGGRADVAGVLRSGQYKYSSAVRNPL--HVVT 515
Query: 445 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 504
P M ++PV + + P P+TA + LA A P Q+ LLG+ LYPL
Sbjct: 516 VPAPMTRSQVVPV------SMVEPPVHILGPEPLTA--SMLAAAPPMDQKQLLGDRLYPL 567
Query: 505 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ + + A K+TGMLLE+D +E+LH+LESPE+LK+KV EA+ VL++
Sbjct: 568 ILAQQPNLAGKITGMLLEIDNSELLHMLESPESLKSKVDEAIAVLQA 614
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L + FS G I S +V RD + S G ++ F P +A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I +P+ + +QR
Sbjct: 72 MNYDVIKGRPIRIMWSQR 89
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/591 (42%), Positives = 347/591 (58%), Gaps = 79/591 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQ---------------------LVPGMRPAGAPMPNFFVP- 393
YG P + P Q + Q + +R A +P VP
Sbjct: 421 YGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVMPRRPPAHISSVRQASTQVPR-MVPH 477
Query: 394 ---VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH-AYRYPLGRNMQDFPFDM 449
V + G Q PGG P + P++P++ H YR
Sbjct: 478 TQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSSAAHNTYRVQ------------ 519
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
+ IP ++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 520 ----------EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVH 560
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 560
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+ A Q P
Sbjct: 561 TQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ--AHQAVEQP 609
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/582 (43%), Positives = 349/582 (59%), Gaps = 77/582 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQ---------------------LVPGMRPAGAPMPNFFVP- 393
YG P + P Q + Q + +R A +P VP
Sbjct: 421 YGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVMPRRPPAHISSVRQASTQVPR-MVPH 477
Query: 394 ---VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA-YRYPLGRNMQDFPFDM 449
V + G Q PGG P + P++P++ H+ YR +Q+
Sbjct: 478 TQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSSAAHSTYR------IQE----- 520
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
+ VP GQ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 521 ---PAVHVP--------------GQE-PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVH 560
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct: 561 TQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/569 (44%), Positives = 347/569 (60%), Gaps = 35/569 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+ D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ER
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAA 181
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E A +F N++VKNL ++ L+ +F ++G + S VMRD G+S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y +AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD KL++ FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDGKLRKEFSPYGVITSAKVMTEGSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRVSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAG---- 411
YG P + P Q + Q RP+ A M PV+ + G R+ +
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---PPRPSCASMVR--PPVMPRCPPAHIGGIRQASTQVPR 473
Query: 412 PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS 471
V TQ+ I P G P GR + + A S V + IP +
Sbjct: 474 TVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPYKCSSAAHSTDQVQ-EPAVHIPGHE-- 529
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 531
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +
Sbjct: 530 -----PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLM 582
Query: 532 LESPEALKAKVAEAMEVLRSVAQQQANNP 560
LESPE+L AK+ EA+ VL+ A Q P
Sbjct: 583 LESPESLHAKIDEAVAVLQ--AHQAVEQP 609
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G+I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/569 (45%), Positives = 359/569 (63%), Gaps = 59/569 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RA++ LN++ + N+ RIM+S RDP++R++G GNIFIKNLD ID+KALHDTF++FGNIL
Sbjct: 103 RAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNIL 162
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
SCK+AT+ +G S G+GFV +E E+A+ AI +NGML+NDK+V+VGH + ++ER+ +
Sbjct: 163 SCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEE 221
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ F NV+ KN+D TDE+ +K+F YG ITS V+ RD DGKSK FGFVNFE+ ++A
Sbjct: 222 SRANFTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQ 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ L+ F ++ +V +AQKKSERE+EL+ +E A E + KFQG+NLY+KN+ +S
Sbjct: 282 TAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESY 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L+E F+ FG ITSCK+MR PSG+S+G GFV +S PEEA++A++EMNGKM+ ++PLY
Sbjct: 342 DDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLY 401
Query: 307 VAVAQRKEERRARLQAQF-------SQMRPVAMGPSVP------PRMPMYPPGPSGLGQQ 353
VA+AQRK++RR +L+AQ Q + A G P P+ +P P G+ +
Sbjct: 402 VALAQRKDDRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMMPR 461
Query: 354 FLYGQAPPAIIP---PQAGFGYQQQLVPGM-----RPAGAPMPNFFVPVVSQGQQGQRPG 405
Y AP ++P P A +G Q GM RPA P G RP
Sbjct: 462 PRY--APAGMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPP 519
Query: 406 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 465
P + QP+P P PRG A R P GR
Sbjct: 520 AGVNGAP-RPAGQPVPGQPM---PRGPAAR-PAGR------------------------- 549
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
P+ +A+ GQP + ALA ASPE+Q+ +LGE++YP V + + A K+TGM+LE+
Sbjct: 550 PQGEAA-GQPG--ALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPV 606
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQ 554
TE+LHLL+ EAL AKV EA+EVL+ Q
Sbjct: 607 TELLHLLDESEALDAKVNEALEVLKEYQQ 635
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 190
+++V LD S T+ L +IF G + S V RD +S + +VNF NA D +A+E
Sbjct: 47 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 106
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN +R + +Q+ + A++ T QG N++IKNL ID++
Sbjct: 107 QLNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFIKNLDAGIDNKA 150
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + F+ FG I SCKV + +G S G GFV + T E A A+ +NG ++ K +YV
Sbjct: 151 LHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHH 209
Query: 311 QRKEERRARLQ---AQFSQMRPVAMGPSV 336
++ER+A+++ A F+ + + P V
Sbjct: 210 IPRKERQAKIEESRANFTNVYAKNVDPDV 238
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 245/560 (43%), Positives = 330/560 (58%), Gaps = 75/560 (13%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+ALD LN+T + + RIM+S RDPS+RK GTGN+FIKNLD +ID+KALHDTFS+FG IL
Sbjct: 125 KALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 184
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV F++ +SA AI+ +NGML+NDK+V+VGH + +++R++ A
Sbjct: 185 SCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEA 244
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKNLD TT+E+ K+F +YG ITS + +D GK + F FVNF D A
Sbjct: 245 LKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQ 304
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LN ++ ++ YVG+AQKK ER++EL+ Q+EQ E ++K+QG+NL++KNL D I
Sbjct: 305 QAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEI 364
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+LK FS FGTITS KVM D + SKG GFV +S PEEA++A+AEMN +M+ KPLY
Sbjct: 365 DDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLY 424
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE RR++L+AQ + V YG AP I+
Sbjct: 425 VALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAA-------GIPAAAVQYGAAP--IV-- 473
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
FG P G PMP PV ++G +PI+P Q
Sbjct: 474 ---FG----------PGGYPMP----PVNARG---------------------MPIVPGQ 495
Query: 427 ---------MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
MP G YP + P V G DA +P
Sbjct: 496 PGAIPMYSGMPQYGAPGAYP---------------GVAPAEVPAVEGDKPADAPTEAALP 540
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 537
+ LA A E ++ ++GE LYP V E + A K+TGMLLEMD +E+L LLE+
Sbjct: 541 ARLTAEDLARAPEENRKQMIGEFLYPKVYVREEELAGKITGMLLEMDNSELLELLENDGM 600
Query: 538 LKAKVAEAMEVLRSVAQQQA 557
L KV EA+ VLR A ++A
Sbjct: 601 LNEKVDEALAVLREYAAKEA 620
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 156/292 (53%), Gaps = 15/292 (5%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQN 96
S + +++I LD + L + F+S G + S ++ D + +S G+ +V F N E +
Sbjct: 66 STSASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 125
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+D+LN LI + + +R+ K NVF+KNLD + ++ L F +G
Sbjct: 126 ALDELNYTLIKGRPCRIMW----SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG 181
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
I S V D G SK +GFV+F++ D A A+E +NG +D++ YVG + +R+ +
Sbjct: 182 KILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSK 241
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
+A+K N+Y+KNL +E+ +LF ++G ITS + +D +G +G
Sbjct: 242 F-----EALKANF-----TNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRG 291
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F+T + A +A+ E+N K LYV AQ+K ER+ L+ Q+ QM+
Sbjct: 292 FAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMK 343
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/558 (44%), Positives = 341/558 (61%), Gaps = 29/558 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ--GQRPGGRRGAGPV 413
YG P + P Q + Q RP+ A + R + V
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---PPRPSCASVVRPPAVPRRPPAHISSVRQASTQVPRTV 475
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
TQ+ I P G P GR + A S V + IP ++
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAHSTYRVQ-EPAVHIPGQE---- 529
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LE
Sbjct: 530 ---PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLE 584
Query: 534 SPEALKAKVAEAMEVLRS 551
SPE+L AK+ EA+ VL++
Sbjct: 585 SPESLHAKIDEAVAVLQA 602
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/342 (58%), Positives = 268/342 (78%), Gaps = 1/342 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
++A RALD LN+TPL + +RIM+SHRDP+ RKSG GNIFIKNLD+S+D+KALHDTFS+F
Sbjct: 93 AAAERALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAF 152
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G+SKG+GFV FE ESA+ AI+K+NGML+ K+V+VG FLR+ ER +
Sbjct: 153 GNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSS 212
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ + KF NVFVKNLDE+ +D+++K +F E+GT+ S ++MRD +GKSK FGF+NFE +
Sbjct: 213 DS-EVKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQ 271
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AV+ALNGK + +E YVG+AQKK+ERE L+ +FE+ E + K+QG+NLY+KNL D
Sbjct: 272 AASAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHD 331
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE L+ FS+FGTITS KVM D +G S+G GFV +++PEEA+RA+ EMNG+MI KP
Sbjct: 332 DIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKP 391
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPG 346
+YVA+AQR++ RRA+L+ Q+ Q + GP P M+PPG
Sbjct: 392 IYVALAQRRDVRRAQLEQQYQQRVAMPPGPRGPMAPGMFPPG 433
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 18/199 (9%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 190
++++V +LD T+ L ++F + G + S V RD +S + +VN+ + D A A
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAER 97
Query: 191 ALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
AL+ + VG+ + S R+ + K V N++IKNL S+D+
Sbjct: 98 ALDQLNYTP---LVGRPMRIMWSHRDPAFR-------KSGVG-----NIFIKNLDRSVDN 142
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV +D G SKG GFV F E A A+ ++NG ++ K +YV
Sbjct: 143 KALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVG 202
Query: 309 VAQRKEERRARLQAQFSQM 327
R+ ER + + +F+ +
Sbjct: 203 PFLRRSERSSDSEVKFTNV 221
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 248/572 (43%), Positives = 357/572 (62%), Gaps = 35/572 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S A R L+ +N + K +RIM+S RDPS+RKSG GNIF+KNL+KSID++AL D FS F
Sbjct: 54 SDAQRVLETMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ +D +G SKG+GFV FE +ESA+ AI+K+NG+++ +VFVGHF ++ERE
Sbjct: 114 GNILSCKVVSDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKEREL 172
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E + L +IFG +G S VM D G+SK FGFV++
Sbjct: 173 ELGARAREFTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATH 232
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +AV+ +NGK+ + R YVG+AQKK ER+ ELK FEQ ++ V ++QG+NLY+KNL
Sbjct: 233 EDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNL 292
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDE+L+ FS FGTITS KVM + G S+G GFV FS P+EA++A+ EMNGK++ S
Sbjct: 293 DDTIDDERLRTEFSPFGTITSAKVMME-GGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTS 351
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ + + P P + P S +++ P +
Sbjct: 352 KPLYVALAQRKEERQAHLTNQYMRRMANIQTFANPVLNPYHQPTSSS---RYIMTTVPSS 408
Query: 363 IIPPQAGFGYQQQLVPGMR------PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT 416
+ + Y Q VP +R P G +P F P VS + + P R P++
Sbjct: 409 QT-RTSYYPYGQ--VPQLRTSSHWGPPGGRLPPF--PTVSGVVRPKTP--RPPFNPMRSA 461
Query: 417 QQPLPIM---------PHQM--PPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 465
P+P M P+Q+ PPR P R +Q + + G + + M I
Sbjct: 462 SGPVPRMMTTQRVVNPPNQVFGPPRPPF--IPNLRAVQQYKYAAGVRNPKRFELPMQINI 519
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
P+ +TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D
Sbjct: 520 PQPAVHAAAQEVLTA--SMLADALPQEQKQMLGERLFPLIQVMHPALAGKITGMLLEIDN 577
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 578 SELLHMLESPESLRSKVDEAVAVLQAHQVKEA 609
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V F +A R L
Sbjct: 3 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLET 62
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 63 MNLDVIKGKPVRIMWSQR 80
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/551 (44%), Positives = 343/551 (62%), Gaps = 47/551 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GN+FIKNLD+SID+KAL+DTFSSF
Sbjct: 54 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+ D +G SKGFGFV +E+ ESAQ AI+K+NGML+ DK+VFV F + +R
Sbjct: 114 GNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMR 172
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFEN 181
E F N+FVKNL +S + L K F ++G + S V+ + G SKC GF++F+
Sbjct: 173 EFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKE 232
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A AVE ++ K+ + ++ Y G+AQKK+ER ELK ++E+ +E + ++QG+NLY+KN
Sbjct: 233 HDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKN 292
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE L+E F +FG ITS KV+ D +G SKG GFV FS+PEEA++A+ EMNG++
Sbjct: 293 LDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFG 352
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
KPLYV +AQRKE+R+A LQ Q+ M+ V+ G + M G + Q F Q P
Sbjct: 353 GKPLYVGLAQRKEDRKAHLQQQY--MQRVSTGIRMQAFM-----GNQVVNQNF---QPPR 402
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
I+P G Q M P G PM R A P Q+ Q P
Sbjct: 403 YILPTMQGQPVQ------MFPQGTPMVR---------------ATPRWAPPNQRVQMPGM 441
Query: 422 IMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 480
+ G +R P RN+Q P ++ + M +P ++ G P T
Sbjct: 442 VRGRMAQQGGPQFRLTPSVRNVQ-IPSEV---------IQMPPQMPHQNQPAGDQAPETL 491
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLLESPEALK 539
S+ LANA+P++Q+ +LGE L+PL++ + D A K+TGMLLE+D +E+LH+L++ E LK
Sbjct: 492 TSSMLANANPQEQKQMLGERLFPLIQSMAATDLAGKITGMLLEIDNSELLHMLDNRELLK 551
Query: 540 AKVAEAMEVLR 550
+KV EA+ VL+
Sbjct: 552 SKVDEAVLVLK 562
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 163/290 (56%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L+D F + G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + + +R+ ++ NVF+KNLD S ++ L F +G I
Sbjct: 62 TMNFDVIKGKPIRIMW----SQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK FGFV++E+ + A +A+E +NG +D++ +V + + +++R +E
Sbjct: 118 SCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMRE--- 173
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSG 278
F A K NL++KNL DS D + L + F +FG + S KV+ D +G+SK G
Sbjct: 174 -FGDAAKHFT------NLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHG 226
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F++F ++A A+ M+ K I K LY AQ+K ER + L+A++ +++
Sbjct: 227 FISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIK 276
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 243/559 (43%), Positives = 341/559 (61%), Gaps = 79/559 (14%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDPS+R+SG GNIFIKNLDK+ID+KA++DTFS+F
Sbjct: 64 ADAERALDSMNFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAF 123
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE- 123
GNILSCK+A D +G SKG+GFV FE +ESA NAI K+NGML+N K+VFVG F+ +++RE
Sbjct: 124 GNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFIPRKDRER 183
Query: 124 TVAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE L + F +YG +TS VM DGKS+ FGFV +E+
Sbjct: 184 ELGEKAKYFTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDP 243
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
D A +A + ++ K + + +VG+AQK++ER+ EL+ +FEQ E ++++QG+NLY+KNL
Sbjct: 244 DAAERACDDMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVNLYVKNL 303
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDE+L++ F+ +GTITS KVM + G GFV FS+PEEA++A+ EMNG+++VS
Sbjct: 304 DDTIDDERLRKEFAPYGTITSAKVMTEGGRNKGGFGFVCFSSPEEATKAVTEMNGRILVS 363
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRKE+R+A+L +Q+ Q MR MG M+ PG G F+
Sbjct: 364 KPLYVALAQRKEDRKAQLASQYMQRMAGMRMQQMGQ-------MFQPGGPGY---FM--- 410
Query: 359 APPAIIPPQAGFGYQQ----QLVPGMRPAGAPMPNF-FVPVVSQG-QQGQRPGGRRGAGP 412
PA I PQ + Q + P P P F F P + QG P G
Sbjct: 411 --PAPIQPQRFYTPAQMAQFRATPRWSAQPQPRPGFKFTPAMRNPPSQGSLPSNAMGGSA 468
Query: 413 VQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV 472
QQ L + +
Sbjct: 469 AGGMQQALVVQGQE---------------------------------------------- 482
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
P+TA + LA+A+P Q+ +LGE L+PL++++ D A K+TGMLLE+D +E+LH+L
Sbjct: 483 ----PLTA--SMLASAAPNDQKQMLGERLFPLIQRMYPDMAGKITGMLLEIDNSELLHML 536
Query: 533 ESPEALKAKVAEAMEVLRS 551
E E+LKAKV EA+ VL++
Sbjct: 537 EHNESLKAKVDEAVAVLQA 555
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 13 SLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 72
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ +P+ + +QR
Sbjct: 73 MNFDVLRGRPIRIMWSQR 90
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/559 (44%), Positives = 339/559 (60%), Gaps = 47/559 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ +ALD LN+T + + RIM+S RDPS+RK GTGN+FIKNLD +ID+KALHDTFS+
Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSA 190
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCK+A D G +KG+GFV F++ ESA AI+ +NGML+NDK+V+VGH + ++ER+
Sbjct: 191 FGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQ 250
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ A+K F NV++KNLD T+++ +FG++G ITS +++D + K + FGFVN+ N
Sbjct: 251 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ ++EQ E ++K+QG+NL+IKN
Sbjct: 311 HECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKN 370
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D +DDE+LK FS FGTITS K+M D G SKG GFV ++TPEEA++A+ EMN +M+
Sbjct: 371 LQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
Query: 302 SKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRKE RR++L+AQ +Q R L QQ
Sbjct: 431 GKPLYVALAQRKEVRRSQLEAQIQARNQFR---------------------LQQQVAAAA 469
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 418
PA+ +G L+ G P G P +P G+ G G P+
Sbjct: 470 GIPAV-----QYGATGPLIYG--PGGYP-----IPAAVNGRGMPMVPGHNGPMPM----- 512
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP-MP 477
P MP Q P G A YP G N + G M+P V AG +A P MP
Sbjct: 513 -YPGMPTQFPAGGPAPGYP-GMNARGPVPAQGRPMMMPGSVP-SAGPAEAEAVPAVPGMP 569
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 537
+ LA E ++ +LGE LYP V E + K+TGMLLEM +E+L LLE A
Sbjct: 570 ERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSA 629
Query: 538 LKAKVAEAMEVLRSVAQQQ 556
L +V EA+ VL+ Q+
Sbjct: 630 LNERVNEAIGVLQEFVDQE 648
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 165/313 (52%), Gaps = 21/313 (6%)
Query: 17 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 76
TP N S+ PS + ++++ LD S+ L + F+S G + S ++ D
Sbjct: 62 TPTNASSVAT------PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDA 115
Query: 77 -SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVF 135
+ +S G+ +V F N E + A+D+LN LI + + +R+ K NVF
Sbjct: 116 VTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI----MWSQRDPSLRKMGTGNVF 171
Query: 136 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
+KNLD + ++ L F +G I S V D G +K +GFV+F++ + A A+E +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 231
Query: 196 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+D++ YVG + ER+ ++ +A+K N+YIKNL I +++ +LF
Sbjct: 232 LLNDKKVYVGHHVSRRERQSKV-----EALKANF-----TNVYIKNLDTEITEQEFSDLF 281
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
+FG ITS +++D + +G GFV ++ E A +A+ E+N K K LYV AQ+K E
Sbjct: 282 GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHE 341
Query: 316 RRARLQAQFSQMR 328
R L+ ++ QM+
Sbjct: 342 REEELRKRYEQMK 354
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/575 (43%), Positives = 348/575 (60%), Gaps = 68/575 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A ALD +N+ + + IRIM+S RDP +RKSG GNIFIKN+D+SID+KAL+DTFS+F
Sbjct: 63 ADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G SKG+GFV FE +E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREE 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ KF N+++KN E DE LK++F +G S VM+D G+S+ FGFVNF +
Sbjct: 182 ELGSKALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + + YVG+AQK+ ER+ ELK +FE ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
DSIDDE+L++ F+ +GTITS KVM D P S+G GFV FS+PEEA++A+ EMNG+++
Sbjct: 302 DDSIDDERLRKEFAPYGTITSAKVMTDGPQ--SRGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
+KPLYVA+AQR+EER+A L ++ Q R + P + Y QA
Sbjct: 360 TKPLYVALAQRREERKAILTNKYMQ-RLATLRTMTSPIIDSYQ-------------QAGY 405
Query: 362 AIIPPQAGFGYQQQLVPGMR--PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
+ PQ Y V MR P P+ QG G RRG+ P+ +Q
Sbjct: 406 YMTVPQPRSFYSPNAVSTMRALPRWTGQPHRL-----QGPYTIVSGPRRGSTPIASVRQA 460
Query: 420 LPIMPH--------------------QMP--PRGHAYRYPLG-RNMQDFPFDMGAGSMLP 456
P+ ++P PR Y+Y RN Q P G +L
Sbjct: 461 STQAPNVISSAQKTNNIGTQTVGGRAELPGVPRSGQYKYSSAVRNAQQVP-----GPVLE 515
Query: 457 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
V + GQ P+TA + LA A Q+ LLGE LYPL+ L + A K+
Sbjct: 516 PSVYIQ----------GQE-PLTA--SMLAAAPLMDQKQLLGERLYPLISTLHPNLAGKI 562
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
TGMLLE+D +E+LH+LE+PE+L +KV EA+ VL++
Sbjct: 563 TGMLLEIDNSELLHMLETPESLHSKVDEAIAVLQA 597
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L + FS G I S +V RD + S G ++ F P +A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I +P+ + +QR
Sbjct: 72 MNYDVIKGRPIRIMWSQR 89
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 264/640 (41%), Positives = 362/640 (56%), Gaps = 125/640 (19%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 104 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 164 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KNLD+ ++E+ +++F ++G ITSA + RD +GKS+ FGFVN+ D A
Sbjct: 224 MKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQ 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D I
Sbjct: 284 AAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDI 343
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+E+F+ +GTITS KVMRD +
Sbjct: 344 DDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKES 403
Query: 272 ----------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
G SKG GFV FS+P+EAS+A+ EMN +MI KPLYVA+AQRK+
Sbjct: 404 GDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDV 463
Query: 316 RRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII--PPQAGFGYQ 373
RR++L+A + + +G+ Q ++ PA+ P Q GF
Sbjct: 464 RRSQLEASIQARNTIRQQQAAA---------AAGMPQPYMQ----PAVFYGPGQQGF--- 507
Query: 374 QQLVPGMRPAG---APMPNFFVPVVSQGQQGQRPG------GRRGAGPVQQT----QQPL 420
+PG + G AP P + V G+ GQ PG G RG GP QQ Q +
Sbjct: 508 ---IPGGQRGGLPFAPQPGMMMGVPG-GRPGQYPGPFPGQQGGRGMGPNQQIPPNFAQGI 563
Query: 421 PIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAG------------I 465
P+ M P G + YP M F GAG VP + MG G +
Sbjct: 564 PM--GAMGPGGIPNGMGYP---QMGQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGV 618
Query: 466 PRRD----------------ASVGQPMPITALST-ALANASPEQQRTLLGESLYPLVEQL 508
P + A G+ P L+ +LA A QQ+ +LGE+LYP ++
Sbjct: 619 PVQGQMRPGQGGRGQNAQPAAGRGEEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQ 678
Query: 509 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
+ + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 679 QPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSV 718
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N + A+
Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 106
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 107 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNI 162
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K +R+ +
Sbjct: 163 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 222
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKNL I +E+ +++F +FG ITS + RD G S+
Sbjct: 223 EMKANF-------------TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSR 269
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV +ST + A A+ EMN K + + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAAR 322
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/576 (43%), Positives = 351/576 (60%), Gaps = 40/576 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPPRMPMYPPGPSGLGQQFLYGQAPP 361
LYVA+AQRKEER+A L ++ Q M V P+ PP P Y +
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQI 422
Query: 362 AIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ 414
A + P + Q Q +RP GAP F + Q + +R A
Sbjct: 423 ARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFSTMRPASSQVPRVMSTQRVANTST 481
Query: 415 QTQQPLPIMPH--------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGI 465
QT P P + PR Y+Y G RN Q +M + V +
Sbjct: 482 QTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQ--- 535
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
GQ T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D
Sbjct: 536 -------GQE---TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDN 585
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 586 SELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 18/299 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/576 (43%), Positives = 351/576 (60%), Gaps = 40/576 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPPRMPMYPPGPSGLGQQFLYGQAPP 361
LYVA+AQRKEER+A L ++ Q M V P+ PP P Y +
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQI 422
Query: 362 AIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ 414
A + P + Q Q +RP GAP F + Q + +R A
Sbjct: 423 ARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFSTMRPASSQVPRVMSTQRVANTST 481
Query: 415 QTQQPLPIMPH--------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGI 465
QT P P + PR Y+Y G RN Q +M + V +
Sbjct: 482 QTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQ--- 535
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
GQ T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D
Sbjct: 536 -------GQE---TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDN 585
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 586 SELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 18/299 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/594 (42%), Positives = 354/594 (59%), Gaps = 71/594 (11%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S DPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE +
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ ++ YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G S+G GFV FS+PEEA++A+ EMNG ++ +KP
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMME-GGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG-------------- 346
LYV++A RKEER+A L ++ Q +R V P + P P P G
Sbjct: 363 LYVSLAHRKEERQAYLTNEYMQRMAGVRAVP-NPVINPYQPAPPSGYFMAAVPQTQNHAA 421
Query: 347 ---PSGLGQ-------------QFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMP 388
PS + Q + P AI P P+ F MRPA + +P
Sbjct: 422 YYPPSQIAQLRPSPCWTAQGARPHPFQNKPSAICPAAPRVPFS-------TMRPASSQVP 474
Query: 389 NFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPF 447
V+S + G P P + + PR Y+Y G RN Q
Sbjct: 475 R----VMSTQRVANTSTQTVGPRPAAAAAAATPAV--RTVPR---YKYAAGVRNPQQH-- 523
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
++ + + +V T ++ LA+A P++Q+ +LGE L+PL+E
Sbjct: 524 -----------LNAQPEVTMQQPAVHVQGQETLTASMLASAPPQKQKQMLGERLFPLIEA 572
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ ++A A
Sbjct: 573 MRPTLAGKITGMLLEIDNSELLHMLESPESLGSKVDEAVAVLQAHQAKEATQKA 626
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 176/298 (59%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + +S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K V + + Q ++ K+ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRI---MWSQHDPSLR-KSGVGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAKAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 247/586 (42%), Positives = 353/586 (60%), Gaps = 55/586 (9%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
+LSCK+ D +G SKG+GFV F +E+A+ AI+K+NG+ +ND +VFVG F ++ERE
Sbjct: 125 VLSCKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ ++P
Sbjct: 304 AIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATEP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQMR---PVAMGPSVPPRMPMYPPG------PSGLGQQFL 355
LYVA+AQRKEER+A L ++ Q + P P + P P P G P +
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAY 422
Query: 356 YGQAPPAIIPPQAGFGYQQ------QLVPG-------------MRPAGAPMPNFFVPVVS 396
+ + A + P + Q Q PG MRPA + +P P
Sbjct: 423 HPPSQTAQLRPSPCWTAQGARPHPFQNKPGAIHPAAPRVPFNTMRPASSRVPRVMSPQRV 482
Query: 397 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSML 455
+ G R P P + H +P Y+Y +G RN Q
Sbjct: 483 ANTSTKTVGPR----PAAAAAAATPAV-HTVP----RYKYAVGVRNPQQH---------- 523
Query: 456 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
++ + + +V T + LA+A P++Q+ +LGE L+PL++ + A K
Sbjct: 524 ---LNAQPQVKMQQPAVHVQGQETLTAAMLASAPPKEQKQMLGERLFPLIQAMHPTLAGK 580
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+TGMLLE D +E+LH+LESPE+L +KV EA+ VL++ ++A A
Sbjct: 581 ITGMLLETDNSELLHMLESPESLCSKVDEAVVVLQAHQAKEATQKA 626
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + +S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K + + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G + S V+ D +G SK +GFV+F + A +A+E +NG +D + +VG+ + +
Sbjct: 118 TVSAFGNVLSCKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P++A AL MN +I KPL + +QR
Sbjct: 61 HPKDAEHALDTMNFDVIKGKPLRIMWSQR 89
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 244/549 (44%), Positives = 337/549 (61%), Gaps = 59/549 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN++ + ++ RIM+S RDPS+RK+GTGNIFIKNLD +ID+KALHDTFS+FG IL
Sbjct: 135 KALEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTIL 194
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV F + +SA AI+ +NGML+NDK+V+VGH + +++R++ A
Sbjct: 195 SCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKFEA 254
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+D TDE+ +F ++G ITS +++D GK + FGFVNFE+ + A
Sbjct: 255 MKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQ 314
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ +N +F ++ YVG+AQK+ ERE EL+ ++EQ E + K+QG+NL+IKNL D +
Sbjct: 315 KAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEV 374
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD LK FS FGTITS KVM D +G SKG GFV +S+PEEA++A+AEMN +M+ KPLY
Sbjct: 375 DDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLY 434
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR++L+AQ M V +G+ QF IP
Sbjct: 435 VALAQRKDVRRSQLEAQIQARNQFRMQQQV---------AAAGMSAQFG--------IPG 477
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR---GAGPVQQTQQPLPIM 423
+G P G P+P V P G+ GA P QP
Sbjct: 478 AMYYG----------PGGYPLPAGARGVPMPHPNMMPPNGKWPVDGAAP-----QP---- 518
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP-VPVDMGAGIPRRDASVGQPMPITALS 482
G YP G +FP G P VP + AG ++AS G +P+ A
Sbjct: 519 -------GMVPVYPPGVAAPNFP-----GYPRPVVPSEQPAG---QEASNG-AVPVPAFD 562
Query: 483 -TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
A + +PE Q+ +LGE YPL+ Q E + A K+TGMLLEMD E+L L++ EAL K
Sbjct: 563 MNAFSAETPENQKQILGEYFYPLIAQREAELAGKITGMLLEMDNAELLGLVQDIEALNGK 622
Query: 542 VAEAMEVLR 550
V EA+ VL+
Sbjct: 623 VDEALSVLK 631
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 17/194 (8%)
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKA 188
K +++V LD S T+ L +IF G + S V RD + S + +VN+ NADD KA
Sbjct: 77 KNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKA 136
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
+E LN R + +Q+ + G N++IKNL +ID+
Sbjct: 137 LEELNYSLIKGRACRIMWSQRDPSLRKTGTG----------------NIFIKNLDPAIDN 180
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FGTI SCKV D G SKG GFV F++ + A+ A+ +NG ++ K +YV
Sbjct: 181 KALHDTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVG 240
Query: 309 VAQRKEERRARLQA 322
+ +R+++ +A
Sbjct: 241 HHVSRRDRQSKFEA 254
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 251/576 (43%), Positives = 337/576 (58%), Gaps = 67/576 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A T F N++VKNL + L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NG + R YVG+AQK+ ER+ ELK +FE ++ +++ QG+NLY+KNL
Sbjct: 242 EEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG++I +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIIGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRKEER+A L Q+ S MR + GP + G QQ
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRALG-GPFL------------GSFQQPTSYF 407
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPG-GRRGAGPVQQ 415
P PP Y G P+ P P + P S + P RR V
Sbjct: 408 LPAMAQPPAQAEHY------GSSPSRQPAPRWTTQPPRPSSASMVRPPAMSRRPLAQVCS 461
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ- 474
+Q +P+ +P H R G+ P P G P R +
Sbjct: 462 VRQTSTQVPYLVP---HTQRV------------ANIGTQTPGPGGAGCSTPGRSLPTHRY 506
Query: 475 -------------------PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
P P+TA + LA A QQ+ ++GE LYPL+ ++ A K
Sbjct: 507 FLATPNTHEVQEPAVRILGPEPLTA--SMLAAAPLHQQKQMIGERLYPLIYEVHTQLAGK 564
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 565 ITGMLLEIDNSELLLMLESPESLNAKVEEALAVLQA 600
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 257/556 (46%), Positives = 333/556 (59%), Gaps = 54/556 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD LN T + K+ RIM+S RDPS+RKSG GNIFIKNLDKS+DHKAL DTFS+F
Sbjct: 60 ADAERALDTLNNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAF 119
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ TD + SKGFGFV +E+++SA AI K+NGM+IND++VFVG F +ER
Sbjct: 120 GNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERGQ 179
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ K+ NV+VKNL E +E+L+ + YG IT+ +M D KSK FGF NFE D+
Sbjct: 180 TQ-ELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDE 238
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A VEA NGK F + YVG+AQKK ERE ELK +FE K+QG+NLYIKN+ D
Sbjct: 239 AKNCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFET-------KYQGVNLYIKNIDD 291
Query: 245 SIDDEKLKELFSEFGTITSCKVMR-DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SID +KL+ F+ +GTITS KVMR D S SKG GFV ++TP+EAS+A+AEM+G+M+ +K
Sbjct: 292 SIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNK 351
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA AQRKE RR L+AQ ++ + G + P MY GP Y Q P +
Sbjct: 352 PLYVAFAQRKEIRRQHLEAQHNKFK----GNRIQPVPSMYAGGP------MFYNQGMPVV 401
Query: 364 IP---PQAGFGYQQQLVPGMRPAGAPM-PNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
P P+ G+ Q + G G PM PN+ P+ +Q G P RG G +
Sbjct: 402 YPQMMPRPRPGWNQPVPQGQ---GYPMQPNY--PIRNQRGPGGAPNHPRGPGGAPNQRPR 456
Query: 420 LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPIT 479
P+ P+Q + P N Q P A + VP + QP
Sbjct: 457 GPMDPNQ--------QVPQAANPQPTPAPATAQEAVAVPSE-------------QPQITL 495
Query: 480 ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVLHLLESPEAL 538
AL EQQ LGE LYPL+ + DAA K+TGMLL+ + E+ L + + L
Sbjct: 496 EYVEALPR---EQQNPFLGELLYPLIHASQPDAAGKITGMLLDSLTVQELFELAQRADKL 552
Query: 539 KAKVAEAMEVLRSVAQ 554
K+ EA+EVL SV+Q
Sbjct: 553 GEKIKEALEVL-SVSQ 567
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVE 190
++++V +L + TD L +IF + G + + + RD +S + +VN+ N DA +A++
Sbjct: 8 SSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALD 67
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN + + +Q+ + G N++IKNL S+D +
Sbjct: 68 TLNNTLVKGKACRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSVDHKA 111
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D + +SKG GFV + + + A +A+ ++NG +I + ++V
Sbjct: 112 LFDTFSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPF 171
Query: 311 QRKEER 316
+ +ER
Sbjct: 172 KSSKER 177
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASR 290
F +LY+ +L + D +L E+F++ G + + ++ RD + S +V + P +A R
Sbjct: 5 FSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAER 64
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N ++ K + +QR R
Sbjct: 65 ALDTLNNTLVKGKACRIMWSQRDPSLR 91
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/576 (43%), Positives = 351/576 (60%), Gaps = 40/576 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S +M D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPPRMPMYPPGPSGLGQQFLYGQAPP 361
LYVA+AQRKEER+A L ++ Q M V P+ PP P Y +
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQI 422
Query: 362 AIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ 414
A + P + Q Q +RP GAP F + Q + +R A
Sbjct: 423 ARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFSTMRPASSQVPRVMSTQRVANTST 481
Query: 415 QTQQPLPIMPH--------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGI 465
QT P P + PR Y+Y G RN Q +M + V +
Sbjct: 482 QTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQ--- 535
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
GQ T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D
Sbjct: 536 -------GQE---TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDN 585
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 586 SELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 173/299 (57%), Gaps = 18/299 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S ++M D
Sbjct: 176 RKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVELMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 260/588 (44%), Positives = 346/588 (58%), Gaps = 90/588 (15%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +IDK+NGML+N K
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK--------------- 167
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
KN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+ D
Sbjct: 168 ------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 215
Query: 185 AAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E + ++QG+NLY+KNL
Sbjct: 216 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLD 275
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSI+DE+L+ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV+K
Sbjct: 276 DSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 334
Query: 304 PLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
PLYVA+AQRKE+R+A L +Q+ Q MR MG M+PPG G G F+
Sbjct: 335 PLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QMFPPG--GAGNYFV---- 381
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG------------QRPGGR 407
P I PQ +G Q P PN P G G + P +
Sbjct: 382 -PTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQTGNSGFATMQGPFRTTPRAPTAQ 440
Query: 408 RGAGPVQQTQQPLPIMPHQ------MPPRGHA------------YRYPLGRNMQDFPFDM 449
AG ++ T PI Q M R A Y NM++ P M
Sbjct: 441 --AGTMRSTLSARPITGQQAVGGANMQSRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAM 498
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
+ P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++ +
Sbjct: 499 AIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMY 547
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 548 PQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 595
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 149/290 (51%), Gaps = 45/290 (15%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + +
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK------------------- 167
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 168 --------------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 207
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 208 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 249/582 (42%), Positives = 355/582 (60%), Gaps = 47/582 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+R+SG GNIF+KNLDKSI++K L+DT S+FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQQF 354
LYVA+AQRKEER+A L ++ Q +R V P + P P P G P +
Sbjct: 363 LYVALAQRKEERQAHLTNEYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAVPQTQNRAA 421
Query: 355 LYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
Y + A + P + Q Q +RPA +P F + Q + +
Sbjct: 422 YYPPSQIAQLRPSPCWTAQGARPHPFQNKPSAIRPAAPRVP-FSTMRPTSSQVPRVMSTQ 480
Query: 408 RGAGPVQQTQQPLPIMPH-------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPV 459
R A QT P P + PR Y+Y G RN Q +
Sbjct: 481 RVANTSTQTVGPRPAAAAAAATPAVRTVPR---YKYAAGVRNPQQH-------------L 524
Query: 460 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ + + +V T ++ LA+A P++Q+ +LGE L+ ++ + A K+TGM
Sbjct: 525 NAQPQVTMQQPAVHVQGQETLTASMLASAPPQEQKQMLGERLFRPIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
LLE+D +E+LH+LES ++L++KV EA+ VL++ ++A A
Sbjct: 585 LLEIDNSELLHMLESSQSLRSKVDEAVAVLQAHQVKEATQKA 626
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + + + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A+ A+D +N +I K V + +R+ ++ N+FVKNLD+S ++ L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TASAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P++A RAL MN +I KP+ + +QR
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 256/569 (44%), Positives = 345/569 (60%), Gaps = 49/569 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+ A++ N T L+ K IR+M+SHRDP R+SG GN+F+KNL SID+ L F FGN
Sbjct: 66 ASHAIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGN 125
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ G+SKG+GFVQFE++E A AI+KLNG +I+ KQ++ G F+RK +R
Sbjct: 126 ILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPN 185
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K+ N+++KNLD T+E L++ F E+G I S V+ +D +G S+ FGFVNFE+ +DA
Sbjct: 186 PDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAK 245
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+A+EALNG + + YV +AQKK+EREQ L+ QFE+ E + K++G N+Y+KN+ D++
Sbjct: 246 RALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNV 305
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+D+ L+E FS G ITS K+MRD GISKG GFV FSTP+EAS+A+ +G M KPLY
Sbjct: 306 NDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLY 365
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+R+A+LQ ++Q GPS P YPP LY APP +IPP
Sbjct: 366 VAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGYPP---------LYYTAPPGVIPP 416
Query: 367 QAGFGYQ----------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT 416
+ G YQ L+P RPA P +P + + R GR Q
Sbjct: 417 RQGLMYQPLGLRTGWRANNLIPPTRPAFQPSSIPLMPNTPRQHRQNR--GRTNGHIPQGG 474
Query: 417 QQPLPIMPHQMPPR---------------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 461
MPH P G A P GR+ ++M GS +P
Sbjct: 475 GHSTAFMPHLQQPTQPVISPKDSINQQRAGQAKYVPNGRS-----YEMSKGSGIPSAASN 529
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
G S G M LS+ LA ASPEQQ+ +LGE LYPLV++ + D AAK+TGMLL
Sbjct: 530 SVGT----GSQGSEM----LSSMLAAASPEQQKQILGEHLYPLVQKQKPDLAAKITGMLL 581
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLR 550
EMD +E+L LLESPE+L AKV EA++VL+
Sbjct: 582 EMDNSELLLLLESPESLAAKVEEAVQVLK 610
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 163/289 (56%), Gaps = 17/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAID 99
++++ +L I L D FS F ++ S +I D S G+S +G+V F + + A +AI+
Sbjct: 12 ASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIE 71
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
N +++ K + V R+ A ++ NVFVKNL +S + L+ +F ++G I
Sbjct: 72 AKNHTMLHGKVIRV----MWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNIL 127
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ DGKSK +GFV FE+ + A A+E LNG D ++ Y GK +K++R
Sbjct: 128 SCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDR------ 181
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ K+ NLYIKNL + +E L+E F EFG I S + +D +G+S+G GF
Sbjct: 182 ----VLPNPDAKYT--NLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGF 235
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V F +PE+A RAL +NG + SK LYVA AQ+K ER L+ QF + R
Sbjct: 236 VNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKR 284
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 255/590 (43%), Positives = 341/590 (57%), Gaps = 91/590 (15%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL+ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRREFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPV--AMG---------------PSVP-------- 337
KPLYVA+AQRKEER+A L Q+ Q A+G P+VP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQTAY 420
Query: 338 ----------PRMPMYPPGPSGLGQQFLYGQAPPA--IIPPQAGFGYQQQLVPGMRPAGA 385
PR PP PS PPA +I P A V G+R A
Sbjct: 421 YASSSPMQPAPRWTAQPPRPS--------STYPPAASMIRPPAMLRRPPAQVSGVRQAST 472
Query: 386 PMPNFFVPVVSQGQQ----GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRN 441
+P P V Q+ G + G GAG PL + H + P R
Sbjct: 473 QVP----PTVPHTQRVANIGTQTTGASGAG-YPAPSGPLLTHKYSSATYNHGVQEPAVR- 526
Query: 442 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 501
IP ++ P+TA + LA A +Q+ ++GE L
Sbjct: 527 -----------------------IPGQE-------PLTA--SMLAAAPLHEQKQMIGERL 554
Query: 502 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
YPL+ A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 555 YPLIYDAHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVLQA 604
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIRGQPIRIMWSQR 89
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/587 (43%), Positives = 349/587 (59%), Gaps = 62/587 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPP-------------RMPMYP---- 344
LYVA+AQRKEER+A L ++ Q M V P+ PP YP
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVTQTQNHAAYYPPSQI 422
Query: 345 ----PGPSGLGQ---QFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVV 395
P P Q + P AI P P+ F MRPA + +P
Sbjct: 423 ARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFS-------TMRPASSQVPRVMSTQR 475
Query: 396 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSM 454
Q G R A + +P Y+Y G RN Q +M
Sbjct: 476 VANTSTQTVGPRPAAAAAAAATPAVRTVPR--------YKYAAGVRNPQQHRNAQPQVTM 527
Query: 455 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
+ V + GQ T ++ LA+A P++Q+ +LGE L+PL++ + A
Sbjct: 528 QQLAVHVQ----------GQE---TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAG 574
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 575 KITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 18/299 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/579 (43%), Positives = 353/579 (60%), Gaps = 62/579 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 153 SRAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 212
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 213 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 271
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 272 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 331
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 332 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 391
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS K EEA++A+ EMNG+++ +
Sbjct: 392 DDGIDDERLRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVAT 433
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQ 352
KPLYVA+AQRKEER+A L Q+ Q +R V P + P P P G P +
Sbjct: 434 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNR 492
Query: 353 QFLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPG 405
Y + A + P + Q Q +PG +RPA AP P F + Q +
Sbjct: 493 AAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMS 551
Query: 406 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 465
+R A QT P P A P R + + + G + P
Sbjct: 552 TQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNTQ 600
Query: 466 PRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
P+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 601 PQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 656
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
MLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 657 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 695
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 246/558 (44%), Positives = 339/558 (60%), Gaps = 30/558 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNL+ SID KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F +G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV+ +NGK+ ++ YVG+AQK++ER+ ELK +FEQ ++ +++G+NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI DEKL+ +FS +G ITS KVM + SKG GFV FS+PEEA++A+ EMNG ++ +
Sbjct: 302 DDSISDEKLRTVFSPYGVITSAKVMTE-GDHSKGFGFVCFSSPEEATKAVTEMNGCIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ + S P P FL G PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMKRLSTVQALSRPVLGSFQQP-----NSYFLPTGAQPP 415
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGG--RRGAGPVQQTQQP 419
A P G + P R P VV RP G RR V +Q
Sbjct: 416 AQAPCCGSSGSVAPVQPAPRWTAQPQRPSTASVV-------RPPGLPRRPQANVSSVRQA 468
Query: 420 LPIMPHQMPPRGHAYRYP-LG-RNMQDFPFDMGAGSMLPV----PVDMGAGIPRRDASVG 473
+PH P H + +G + M S+LP V + G+P V
Sbjct: 469 STQVPHLAP---HTKKVANIGTQTMGRAACSTEGPSLLPCTCSSTVHIAHGVPEPAVHVP 525
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A +Q+ ++GE LY L+ ++ A K+TGMLLE+D +++L +LE
Sbjct: 526 GQEPLTA--SMLAAAPLHEQKQMIGERLYHLIPEVYASLAGKITGMLLEIDNSDLLLMLE 583
Query: 534 SPEALKAKVAEAMEVLRS 551
SPE+L+AK+ EA+ VL++
Sbjct: 584 SPESLQAKIEEAVAVLQA 601
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++TFS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ NVF+KNL++S + L F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + ERE EL
Sbjct: 128 CKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGA- 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
QA++ T N+Y+KNL +D++ L++LF FG + S KVMRD SG S+G GFV
Sbjct: 186 --QALEFT-------NIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+ MNGK + + LYV AQ++ ER+ L+ +F Q++
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLK 284
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 247/548 (45%), Positives = 334/548 (60%), Gaps = 29/548 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ--GQRPGGRRGAGPV 413
YG P + P Q + Q RP+ A M V R + V
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
TQ+ I P G P GR + A S V + IP ++
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAHSTYRVQ-EPAVHIPGQE---- 529
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LE
Sbjct: 530 ---PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLE 584
Query: 534 SPEALKAK 541
SPE+L AK
Sbjct: 585 SPESLHAK 592
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 252/552 (45%), Positives = 335/552 (60%), Gaps = 67/552 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD LN TP+ K+ RIM+S RDPS+RKSG GNIFIKNLDK++DHKAL+DTFS+F
Sbjct: 60 TDAERALDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAF 119
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ TD + SKGFGFV +E++ESA+ AI K+NGM+IN+++VFVG F +ER
Sbjct: 120 GNILSCKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGA 179
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ K+ NVF+KNL E +++ L + +G IT+ +M D GKSK FGF NFE+AD
Sbjct: 180 TQ-EVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADA 238
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A AVE NGK F + YVG+AQKK ERE ELK +FE K+QG+NLYIKNL D
Sbjct: 239 AKGAVENENGKMFSGKVIYVGRAQKKLEREAELKHKFE-------TKYQGVNLYIKNLDD 291
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SID +KL+ FS +GTITS KVMRD G SKG GFV +STP+EAS+A+AEM+G+M+ SK
Sbjct: 292 SIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSK 351
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAM--GPSVPPRMPM-YPPGPSGLGQQFLYGQAP 360
PLYVA AQRK+ RRA+L+AQ ++ + M PP P+ YPP G +Y Q
Sbjct: 352 PLYVAFAQRKDVRRAQLEAQHTKFKSSRMPVQSIYPPTGPIFYPPA----GMPVVYPQMI 407
Query: 361 PAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPL 420
P PP+AG+ P+P QQGQ P P+ Q Q P+
Sbjct: 408 PR--PPRAGW-------------NGPVP----------QQGQYP-------PM-QGQYPI 434
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPIT- 479
+PP G+ P R P + P+ + + +P +
Sbjct: 435 RNPRGGVPPTGNHRNQPRPR-----PDGQQPAAQQPIAQQL----------IAEPQAVQP 479
Query: 480 ALSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVLHLLESPEA 537
++ A + P EQQ + LGE LYPL+ + D + K+TGMLL+ + E+ L + E
Sbjct: 480 EVTLATVQSMPREQQNSFLGELLYPLIHASQPDLSGKITGMLLDSLTVEELFTLYQRTEL 539
Query: 538 LKAKVAEAMEVL 549
L K+ EA++VL
Sbjct: 540 LADKIKEALDVL 551
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 248/559 (44%), Positives = 336/559 (60%), Gaps = 34/559 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ ++QG+NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P P L PA
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFL----------PA 410
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGG-RRGAGPVQQTQQP 419
+ P A Y P+ P P + P VS + P RR V +Q
Sbjct: 411 VPQPPAQAAYY-----ASSPSVQPAPRWTAQPPRVSSASMVRPPAMLRRPPAQVNSVRQA 465
Query: 420 LPIMPHQMPPRGHAYRYP-LGRNM---QDFPFDMGAGSMLPVPVDMGAGIP-RRDASVGQ 474
+P PP H R +G + G +L A P R+++V
Sbjct: 466 STQVP---PPGPHTQRVANIGTQTTGASGVGYSTPTGPVLTHKYSSAAHNPGVRESAVCI 522
Query: 475 P--MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
P P+TA + LA A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +L
Sbjct: 523 PGQEPLTA--SMLAAAPLHEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLML 580
Query: 533 ESPEALKAKVAEAMEVLRS 551
ESPE+L AKV EA+ VL++
Sbjct: 581 ESPESLNAKVEEALAVLQA 599
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPVRIMWSQR 89
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 256/602 (42%), Positives = 353/602 (58%), Gaps = 68/602 (11%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A RALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLD+SID KAL+DTFS+
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSA 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER- 122
FGNILSCK+ D +G SKG+GFV FE +E A+ AI+K+NGM +ND++VFVG F +++R
Sbjct: 122 FGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQ 180
Query: 123 -ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
E A +F NV++KNL E DE L+ +F ++G S VM D GKSK FGFV+FE
Sbjct: 181 AELGARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF----------EQAMKETVDK 231
+DA KAV+ +NGK + ++ YVG+AQKK ER+ ELK +F EQ ++ +
Sbjct: 241 HEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVR 300
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 291
QG+NLY+KNL D IDDE+L++ FS FGTITS KV + G SKG GFV FS+PEEA++A
Sbjct: 301 CQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKA 359
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP-GPSGL 350
+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q S P P P PSG
Sbjct: 360 VTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVSSPVINPFQPAQAPSGY 419
Query: 351 GQQFLYG----QAPPAIIPP----QAGFGYQ-----------QQLVPGMRPAGAPMPNFF 391
F+ Q A P Q G G++ Q + ++PA P +
Sbjct: 420 ---FMTTTSQTQNCGAYYAPNQTTQQGPGHRGSAQGARAHPFQNMSSAIQPATIPSFSTS 476
Query: 392 VPVVSQGQQGQRPGGRRGAGPVQQ-----TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP 446
P SQ + R G+ Q T +P+P Y+Y G +++ P
Sbjct: 477 GPASSQALRSMSTH-RAGSASTQMMGSHPTARPVP-----------QYKYTAG--VRNPP 522
Query: 447 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 506
+ A + + R V +TA + LA+ASP+ Q+ +LGE L+ L++
Sbjct: 523 QHLSAQPQVT--------MQRSAVPVQGKASLTA--SMLASASPQAQKQMLGEWLFSLIQ 572
Query: 507 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 566
+ A K+TGMLLE+D E+ H+LESPE L K+ EA+ VL+ A Q P + S
Sbjct: 573 AMHPALAGKITGMLLEIDNLELRHMLESPECLHTKIDEAIAVLQ--AHQAKETPQQAVGS 630
Query: 567 LS 568
++
Sbjct: 631 VA 632
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FSS G ILS ++ D + +S G+ V F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
E A+ A+D +N +I K V + +R+ K+ N+FVKNLD S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE ++A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+R+ EL + ++ N+YIKNLG+ +DDE+L+ LFS+FG S KVM D
Sbjct: 177 RDRQAELGARAKEFT----------NVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 258/588 (43%), Positives = 347/588 (59%), Gaps = 90/588 (15%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK--------------- 167
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
KN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+ D
Sbjct: 168 ------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 215
Query: 185 AAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KNL
Sbjct: 216 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 275
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV+K
Sbjct: 276 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 334
Query: 304 PLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
PLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 335 PLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV---- 381
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG------------QRPGGR 407
P I PQ +G Q P PN P G G + P +
Sbjct: 382 -PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQ 440
Query: 408 RGAGPVQQTQQPLPIMPHQ------MPPRGHA------------YRYPLGRNMQDFPFDM 449
AG ++ T PI Q M R A Y NM++ P M
Sbjct: 441 --AGTMRNTLSARPITGQQAVGGANMQNRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAM 498
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
+ P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++ +
Sbjct: 499 AIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMY 547
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 548 PQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 595
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 149/290 (51%), Gaps = 45/290 (15%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + +
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK------------------- 167
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
KN G+ + D+KLKE+F ++GTITS KVM G S+G GF
Sbjct: 168 --------------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 207
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 208 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/603 (41%), Positives = 357/603 (59%), Gaps = 78/603 (12%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L + RALD LN+T + K RIM+S RDPS+RK+GTGN+FIKNLD SID+KALHDTF++
Sbjct: 127 LLTGERALDELNYTLIKGKPCRIMWSQRDPSLRKTGTGNVFIKNLDASIDNKALHDTFTA 186
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG+ILSCK+A D G SKG+GFV ++ ESA+ AI K V+VGH + K++R+
Sbjct: 187 FGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAI----------KHVYVGHHVSKKDRQ 236
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ +K KF NV+VKN+D ++ + +++F ++G +TS + D +GKS+ FGFVN+EN
Sbjct: 237 SKFDDMKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYEN 296
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DAA+AVE L+ ++ DR+ YV +AQKK ERE+EL+ Q+EQA + ++K+ G+NL++KN
Sbjct: 297 HEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGINLFVKN 356
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D IDDE+L++ FS +GTITS K+M D +G SKG GFV FS+P+EA++A+ EMN +M+
Sbjct: 357 LDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVS 416
Query: 302 SKPLYVAVAQRKEERRARLQAQFS-------QMRPVAMGPSVPPRMPMYPPGPSGLGQQF 354
KPLYVA+AQRK+ RR++L++Q + Q + A G S MP P
Sbjct: 417 GKPLYVALAQRKDVRRSQLESQINARNQLRIQQQAAAAGMSPQYGMPGAP---------M 467
Query: 355 LYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ-----RPG-- 405
YGQ P +P P G +P +PA P +VP S GQ PG
Sbjct: 468 FYGQGPTGFMPAGPMTDRG-----MPFPQPAMVPSRPRWVPQQSGQPNGQAISQIYPGMS 522
Query: 406 ------------GRRGAGPVQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAG 452
R G P Q P+MP M P G Y +G N ++ D
Sbjct: 523 GYNAYLAIQGRSQRSGQVPRPQGIPSRPMMPMAMRPLLGSTRMYRVGSNTRNGTKD---- 578
Query: 453 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 512
+D+G+ + +LA ASPE Q+ +LGE LYP V+ E
Sbjct: 579 -----GIDVGSD-------------DLLTAASLAAASPENQKQMLGEVLYPKVQAQEPGF 620
Query: 513 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ-QQANNPADQLASLSLNE 571
A K+TGMLLEMD +E+LHL+E AL+AKV EA+ VL+ + + A + L +
Sbjct: 621 AGKITGMLLEMDNSELLHLIEDDVALRAKVEEALIVLKEYQKGVSVQDQATETNELCIQL 680
Query: 572 NLV 574
NL+
Sbjct: 681 NLI 683
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEAS----- 289
+LY+ L S+ + L ELF+ G + S +V RD + S G +V F + +
Sbjct: 72 SLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTGE 131
Query: 290 RALAEMNGKMIVSKPLYVAVAQR 312
RAL E+N +I KP + +QR
Sbjct: 132 RALDELNYTLIKGKPCRIMWSQR 154
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 250/614 (40%), Positives = 354/614 (57%), Gaps = 89/614 (14%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
++ RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FG
Sbjct: 87 ASIRALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG 146
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
NILSCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 147 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 206
Query: 126 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+K F NV+VKN+ TD++ + +F +G +TS+ + RD +GKS+ FGFVNF +
Sbjct: 207 FEEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHE 266
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AAKAVE LN K F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL
Sbjct: 267 AAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLD 326
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDP--------------------------------- 270
D +DDEKL+ LF++FG ITS KVMRD
Sbjct: 327 DEVDDEKLRTLFADFGPITSAKVMRDTPTDSKEDEEGSSEEKEKENKPEAEEKTEEKEGS 386
Query: 271 -----------SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
G SKG GFV FS P++A++A+AEMN +M+ KPLYVA+AQRK+ R+++
Sbjct: 387 EKKEKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVHGKPLYVALAQRKDVRKSQ 446
Query: 320 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 379
L+A +A + P+ M PP GQQ ++ PQ G G +P
Sbjct: 447 LEASIQARNQLAAAAAGLPQQYMQPPVFYAGGQQPVF---------PQGGRG-----MP- 491
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGG--RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP 437
P P +P V G+ GQ PGG ++G V Q P+ MP Q PP YP
Sbjct: 492 -----FPQPGMPMPAVQGGRPGQFPGGYPQQGGRGVPQQMPPVYGMPGQFPP---GAPYP 543
Query: 438 LGRN------MQDFPFDMGAG---------SMLPVPVDMGAGIPRRDASVGQPMPITALS 482
N +Q GAG + P P P +D + + LS
Sbjct: 544 NSGNPQFLAAIQQGGNQPGAGRGANPNGPRNNAPFPQGGRGAAPAQDLNSSS-LIQQQLS 602
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+A N P QQ+ +LGE ++P ++ ++ + A K+TGMLLEM+ E+++L+E ALKAKV
Sbjct: 603 SAAGN--PGQQKQILGEVIFPKIQAMQPELAGKITGMLLEMENAELVNLIEDESALKAKV 660
Query: 543 AEAMEVLRSVAQQQ 556
EA+ V + Q
Sbjct: 661 DEALGVYEEYIKNQ 674
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 149/292 (51%), Gaps = 45/292 (15%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 99
+ ++++ LD S+ L + FS G++ S + A++
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIR-------------------------ALE 93
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 94 ELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 149
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QE 216
S V +D +G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+ +E
Sbjct: 150 SCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 209
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
+K F N+Y+KN+ + + D++ ++LF+ FG +TS + RD G S+G
Sbjct: 210 MKANF-------------TNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRG 256
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV F+T E A++A+ ++N K + LYV AQ+K ER L+ + R
Sbjct: 257 FGFVNFTTHEAAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 308
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/570 (44%), Positives = 349/570 (61%), Gaps = 68/570 (11%)
Query: 26 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGF 85
+ +S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+ F
Sbjct: 90 LWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAF 148
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDEST 143
V FE +++A AI+K+NGML+ND++VFVG F ++ERE + K K F NV++KN E
Sbjct: 149 VHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDM 208
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
DE LK+ F +YG S VM D GKSK FGFV+FE +DA KAV+ +NGK + + +
Sbjct: 209 DDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMF 268
Query: 204 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 263
VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS
Sbjct: 269 VGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 328
Query: 264 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 323
KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q
Sbjct: 329 AKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ 387
Query: 324 FSQMRPVAMGPSVPPR--MPMYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLV 377
+ M+ +A ++P + + P P G F+ Q+ P P + Q+
Sbjct: 388 Y--MQRIAGMRALPANTLINQFQPAPGGY---FVPAVPQTQSRPTYYAPN----HMAQIR 438
Query: 378 PG------MRPAG-APMPNFFV------------PVVSQGQQG-----QRPGGRRGAGPV 413
PG RP G PMPN P +QG +G QR G +
Sbjct: 439 PGPRWQQTGRPQGFQPMPNTLRQSGPRQSLRHMPPSNTQGTRGIPSVTQRVGVSSSTQTM 498
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
P +PP Y+Y + P+P P+ V
Sbjct: 499 GPRPPVSAPPPRAVPP----YKY----------------TRCPLPGVQPLQTPQPAVHVQ 538
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LE
Sbjct: 539 GQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLE 596
Query: 534 SPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
SPE+L++KV EA+ VL++ QA A Q
Sbjct: 597 SPESLRSKVEEAVAVLQA---HQAKKDAAQ 623
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 245/561 (43%), Positives = 336/561 (59%), Gaps = 38/561 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F +G + S VMRD G S+ FGFVNF+
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S +R + +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFHQPTSYFLPSVPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAG---- 411
Y P P+ P RP+ A + P +S+ Q R+ +
Sbjct: 421 YASGLPMQPTPR-------WTAPPPRPSSASVVR--PPAMSRRPPAQVSSVRQASTQVPP 471
Query: 412 PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM-QDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
PV TQ+ I G Y P G + +P G+
Sbjct: 472 PVPHTQRVANIGTQTTGASGVGYSTPGGPLLTHRYP-----------SATHNHGVQEPAV 520
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 530
+ P+TA + LA A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L
Sbjct: 521 RILGQEPLTA--SMLAAAPLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLL 578
Query: 531 LLESPEALKAKVAEAMEVLRS 551
+LESPE+L AKV EA+ VL++
Sbjct: 579 MLESPESLNAKVEEALAVLQA 599
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 256/588 (43%), Positives = 344/588 (58%), Gaps = 90/588 (15%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +ID++NGML+N K
Sbjct: 123 GNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK--------------- 167
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
KN E TD+ LK +F +YGTITS VM DGKS+ FGFV FE+ D
Sbjct: 168 ------------KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 215
Query: 185 AAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KNL
Sbjct: 216 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 275
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV+K
Sbjct: 276 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 334
Query: 304 PLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
PLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+
Sbjct: 335 PLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV---- 381
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG----------------QR 403
P I PQ +G Q P PN P G G +
Sbjct: 382 -PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQ 440
Query: 404 PGGRR--------------GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDM 449
PG R G +Q P + R Y+Y NM++ P M
Sbjct: 441 PGAMRSTLSARPITGQQTVGGANMQNRSMAGPAVGVTAQSRPSNYKYT--SNMRNPPQAM 498
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
+ P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++ +
Sbjct: 499 AIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMY 547
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 548 PQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 595
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 149/290 (51%), Gaps = 45/290 (15%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A K+++ +NG + +
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK------------------- 167
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
KN G+ + D+KLK++F ++GTITS KVM G S+G GF
Sbjct: 168 --------------------KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGF 207
Query: 280 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
VAF P+ A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 208 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 254/613 (41%), Positives = 340/613 (55%), Gaps = 114/613 (18%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 98 RALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D DE+ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQ 277
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 278 AAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDV 337
Query: 247 DDEKLKELFSEFGTITSCKVMRD------------------------------------- 269
DD+KL+ELF +GTITS KVMRD
Sbjct: 338 DDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKE 397
Query: 270 --------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+
Sbjct: 398 KEEEKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 457
Query: 316 RRARLQAQFSQMRPV--------------AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
RR++L+A + M P+V Y PG G F+ G
Sbjct: 458 RRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV-----FYGPGQQG----FIPGAQRG 508
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---Q 418
+ PPQ G PG P P P GQQG RG GP QQ Q
Sbjct: 509 GMFPPQPGMMMGMPGRPGQYP--GPFP---------GQQGG-----RGVGPNQQIPPNFQ 552
Query: 419 PLPIMPHQMPPRGHAYRYPL---------------GRNMQDFPFDMGAGSMLPVPVDMGA 463
LP+ Q P + YP+ G G +P+ M
Sbjct: 553 GLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRP 612
Query: 464 GIPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
G R +VGQP P T + + AL+ A P+QQ+ +LGE+LYP ++ + + A K+TGM
Sbjct: 613 GQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGM 672
Query: 520 LLEMDQTEVLHLL 532
LLEMD TE+L LL
Sbjct: 673 LLEMDNTELLGLL 685
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 21/318 (6%)
Query: 15 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
N TP N + + + + + ++++ LD S+ L++ FSS G + S ++
Sbjct: 16 NGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 75 DG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 133
D + +S G+ +V + + + A+D+LN LI K + +R+ KT N
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTGQGN 131
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
VF+KNLD + ++ L F +G I S V +D G SK +GFV++E A+ A A++ +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 194 GKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G +D++ +VG K +R+ +E+K F N+YIKN+ ++DE+
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVEDEE 238
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
++LF +FG ITS + RD G S+G GFV FST E A A+ EMN K + S+ LYV A
Sbjct: 239 FRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 311 QRKEERRARLQAQFSQMR 328
Q+K ER L+ Q+ R
Sbjct: 299 QKKHEREEELRKQYEAAR 316
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 249/619 (40%), Positives = 353/619 (57%), Gaps = 98/619 (15%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF++FGNIL
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 177 SCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN++ TD++ +++F ++G +TS+ + RD +GK++ FGFVNF + AA
Sbjct: 237 MKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAA 296
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNLGD +
Sbjct: 297 KAVDDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDV 356
Query: 247 DDEKLKELFSEFGTITSCKVMRDP------------------------------------ 270
DDEKL+ +FSE+G ITS KVMRD
Sbjct: 357 DDEKLRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEK 416
Query: 271 -----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325
G SKG GFV FS P++A++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A
Sbjct: 417 KGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQ 476
Query: 326 QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGA 385
+ M + +G+ QQ++ QAP Q GF PG R G
Sbjct: 477 ARNQLRMQQAA---------AQAGMPQQYM--QAPVYYAGQQPGF----MPAPGGR--GV 519
Query: 386 PMPNFFVPVVSQGQQGQRP---GGRRGAGPVQQTQQPLPIM---PHQMPPRGHAYRYPLG 439
P P +PV G+ GQ P GGR G P Q PI P PP Y +G
Sbjct: 520 PFPQGGIPVQG-GRPGQYPYQQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAMG 578
Query: 440 R--------------NMQDFPFDMGAGSMLPVPVDMGA-GIPRRDASV-----------G 473
+ Q P + G + P + G G PR +A+ G
Sbjct: 579 QVGALGGGRGGPAGRGPQGIPAGIPQG-LQGAPANGGGRGTPRGNANFMAAGRGASPVPG 637
Query: 474 QPMPITA---LSTALANA-SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 529
P ++A L LA P+ Q+ ++GE+L+P ++ ++ A K+TGMLLEMD E++
Sbjct: 638 APADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELI 697
Query: 530 HLLESPEALKAKVAEAMEV 548
+L E AL KV EA+ V
Sbjct: 698 NLFEDDNALNVKVQEALAV 716
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 159/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT N+F+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 176 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 235
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + D++ +ELF +FG +TS + RD G ++
Sbjct: 236 EMKANF-------------TNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTR 282
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ ++NGK + LYV AQ+K ER L+ + R
Sbjct: 283 GFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAAR 335
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 245/559 (43%), Positives = 339/559 (60%), Gaps = 42/559 (7%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+TP+ K+ RIM+S RDPS+R++G+GNIFIKNL +ID+K LHDTFS+FG IL
Sbjct: 103 KALEELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKIL 162
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCKIATD +G SKGFGFV +E ESA+ AI+ +NGML+ND +V+VG L K++R++
Sbjct: 163 SCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRE 222
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ F NV+VKN++ + ++ L++ F +GTI+S + +D GKS+ FGFVNFE +DA
Sbjct: 223 LIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAV 282
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K D ++ YVG+AQKKSER + LK Q+E A +E ++K+QG NL++KNL DSI
Sbjct: 283 KAVEELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSI 342
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD KL+E F +GTITS KVM D +G SKG GFV +S+PEEA++A+ EM+ +M+ KPLY
Sbjct: 343 DDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLY 402
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQ---QFLYGQAPPAI 363
VA+AQRKE RR++L Q + M + G+GQ YGQ P +
Sbjct: 403 VALAQRKEVRRSQLSQQIQARNQMRMQQAA---------AQGGMGQFVAPMFYGQNPGFL 453
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
P G + M G P P VP VS GQ P G+ PV QP+
Sbjct: 454 PPGARGAPFAAPGQQMMMQQGMPRPGQGVP-VSPGQFRVGPNGQ----PVPMYMQPV--- 505
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
++ P G R P R Q G P G R D +V +L+
Sbjct: 506 FNEYPQNG---RLPQQRYYQ-------GGRPGQQPPQAGPRGKREDGAV------PSLAQ 549
Query: 484 ALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 539
L PEQQ+ +LGE LYPL+ + + +AA K+TGM+LEMD ++L LLE +
Sbjct: 550 VLPQFPPEQQKRMLGEELYPLIVATGKAQDPEAAGKITGMMLEMDNQQILALLEDRDLFN 609
Query: 540 AKVAEAMEVLRSVAQQQAN 558
++ EA+ ++A+
Sbjct: 610 SQFEEALSAYEEYKNKEAS 628
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L E+FS G +++ +V RD S S G +V F + + +AL E
Sbjct: 48 SLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALEE 107
Query: 295 MNGKMIVSKPLYVAVAQR 312
+N I K + +QR
Sbjct: 108 LNYTPIKGKACRIMWSQR 125
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 262/631 (41%), Positives = 355/631 (56%), Gaps = 108/631 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 107 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 166
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 167 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDE 226
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D T+E+ +KIF ++G ITSA + RD +GKS+ FGFVN+ + A
Sbjct: 227 MKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQ 286
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ ++ K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 287 AAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 346
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+ELF +GTITS KVMRD +
Sbjct: 347 DDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPK 406
Query: 272 ------------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK
Sbjct: 407 ESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
Query: 314 EERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPPQ 367
+ RR++L+A + + P+ M P G GQQ GQ PQ
Sbjct: 467 DVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQ 526
Query: 368 AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIMP 424
G +PG RP P P P GQQG RG GP QQ Q +P+
Sbjct: 527 PGM---VMGIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQMPPNFQGIPMGA 571
Query: 425 HQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP--------------- 466
Q P P G Y +G+ F G G + +P+ G P
Sbjct: 572 MQGPGGIPNGMGYPQAMGQ--VQFGRGGGRGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQ 629
Query: 467 --RRDASVGQP------MPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
R + QP P AL+ AL A+P QQ+ +LGE+LYP ++ + + A K+T
Sbjct: 630 GGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKIT 689
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
GMLLEMD TE+L LLE +AL+AKV EA+ V
Sbjct: 690 GMLLEMDNTELLGLLEDDDALRAKVDEALSV 720
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 159/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N + A+
Sbjct: 50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 109
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 110 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 165
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ--- 215
S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K +R+
Sbjct: 166 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFD 225
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ + +E+ +++F +FG ITS + RDP G S+
Sbjct: 226 EMKANF-------------TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSR 272
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV +ST E A A+ EM+ K + ++ LYV AQ+K ER L+ Q+ R
Sbjct: 273 GFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAAR 325
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 253/612 (41%), Positives = 339/612 (55%), Gaps = 114/612 (18%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 98 RALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D DE+ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQ 277
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 278 AAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDV 337
Query: 247 DDEKLKELFSEFGTITSCKVMRD------------------------------------- 269
DD+KL+ELF +GTITS KVMRD
Sbjct: 338 DDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKE 397
Query: 270 --------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+
Sbjct: 398 KEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 457
Query: 316 RRARLQAQFSQMRPV--------------AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
RR++L+A + M P+V Y PG G F+ G
Sbjct: 458 RRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV-----FYGPGQQG----FIPGAQRG 508
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---Q 418
+ PPQ G PG P P P GQQG RG GP QQ Q
Sbjct: 509 GMFPPQPGMMMGMPGRPGQYP--GPFP---------GQQGG-----RGVGPNQQIPPNFQ 552
Query: 419 PLPIMPHQMPPRGHAYRYPL---------------GRNMQDFPFDMGAGSMLPVPVDMGA 463
LP+ Q P + YP+ G G +P+ M
Sbjct: 553 GLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRP 612
Query: 464 GIPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
G R +VGQP P T + + AL+ A P+QQ+ +LGE+LYP ++ + + A K+TGM
Sbjct: 613 GQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGM 672
Query: 520 LLEMDQTEVLHL 531
LLEMD TE+L L
Sbjct: 673 LLEMDNTELLGL 684
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 21/318 (6%)
Query: 15 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
N TP N + + + + + ++++ LD S+ L++ FSS G + S ++
Sbjct: 16 NGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 75 DG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 133
D + +S G+ +V + + + A+D+LN LI K + +R+ KT N
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTGQGN 131
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
VF+KNLD + ++ L F +G I S V +D G SK +GFV++E A+ A A++ +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 194 GKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G +D++ +VG K +R+ +E+K F N+YIKN+ ++DE+
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVEDEE 238
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
++LF +FG ITS + RD G S+G GFV FST E A A+ EMN K + S+ LYV A
Sbjct: 239 FRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 311 QRKEERRARLQAQFSQMR 328
Q+K ER L+ Q+ R
Sbjct: 299 QKKHEREEELRKQYEAAR 316
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 256/584 (43%), Positives = 355/584 (60%), Gaps = 51/584 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G S+G GFV FE +E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + D L++IF +G S VM D G+SK FGFVNFE
Sbjct: 182 EFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E V ++QG+NLY+KNL
Sbjct: 242 EEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ Q MR + +G PP PP P +
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQPRAAF 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM------PNFFVPVVSQGQQGQRPGGRRG 409
Y +P + P + Q P PA P+ P V +S +Q R
Sbjct: 421 YSPSPVVPVRPATRWSAQPSRSPTY-PAATPVLRAAVQPRRLVSNISTMRQASTQVPRLT 479
Query: 410 AGPVQQ-----TQQPLPIMPHQMPPRGH-AYRYPLG-RNMQDFPFDMGAGSMLPVPVDMG 462
+ TQ +P RG Y+Y L RN+Q MG+
Sbjct: 480 ISSLLVAANIGTQTVSARVPSSPTLRGAPHYKYSLAMRNIQ----PMGS----------- 524
Query: 463 AGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
+P VG+P P+TA + LA A P++Q+ ++GE LYPL+ + A K
Sbjct: 525 --VPPGAQQVGEPAVHVQGQEPLTA--SMLAAAPPQEQKQMIGERLYPLIHAMHASLAGK 580
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN 559
+TGMLLE+D +E+L LLESPE+L +K+ EA+ VL++ +A++
Sbjct: 581 ITGMLLEIDNSELLLLLESPESLHSKIEEAVAVLQAHQATEASH 624
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD S S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPVRIMWSQR 89
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 249/560 (44%), Positives = 337/560 (60%), Gaps = 35/560 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ ++QG+NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P P FL PA
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQP-----ASYFL-----PA 410
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGG-RRGAGPVQQTQQP 419
+ P A Y P+ P P + P VS + P RR V +Q
Sbjct: 411 VPQPPAQAAYY-----ASSPSVQPAPRWTAQPPRVSSASMVRPPAMLRRPPAQVNSVRQA 465
Query: 420 LPIMPHQMPPRGHAYRYP-LGRNM---QDFPFDMGAGSMLPVPVDMGAGIP-RRDASVGQ 474
+P PP H R +G + G +L A P R+++V
Sbjct: 466 STQVP---PPGPHTQRVANIGTQTTGASGVGYSTPTGPVLTHKYSSAAHNPGVRESAVCI 522
Query: 475 P--MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
P P+TA + LA A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +L
Sbjct: 523 PGQEPLTA--SMLAAAPLHEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLML 580
Query: 533 ESPEALKAKVA-EAMEVLRS 551
ESPE+L AKV EA+ VL++
Sbjct: 581 ESPESLNAKVVEEALAVLQA 600
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPVRIMWSQR 89
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/576 (41%), Positives = 348/576 (60%), Gaps = 37/576 (6%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A R + +N + K +R+M+S RDPS+RKSG GN+F+KNL+KSI++K+L+D FSS
Sbjct: 161 LADAERVMTDMNLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSS 220
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ TD +G SKG+GFV FE++ESA+ AI K+NG+L+ND ++FVGHF +++RE
Sbjct: 221 FGNILSCKVITDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRE 279
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ A +F NV++KN E ++ L KIF ++G S VMRD G+SK FGFVNF+
Sbjct: 280 SELGAQTREFTNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQK 339
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA A++ +NGK+ + R+ Y G+AQKK ER+ +L+ FEQ + + ++QG+NLYIKN
Sbjct: 340 HEDAQNAIDNMNGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKN 399
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D IDDE L++ FS FGTITS KVM + +G SKG GFV FS PEEA+ A+ EMNG+++
Sbjct: 400 LDDDIDDENLRKEFSSFGTITSAKVMMN-NGRSKGFGFVCFSAPEEATTAVTEMNGRLVA 458
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG------LGQ--- 352
SKPLYVA+AQRKEER+A L Q+ Q R + + P + Y G S L Q
Sbjct: 459 SKPLYVALAQRKEERKAHLANQYVQ-RMARIRSTATPTLGPYRTGASSRYFFTPLTQSQS 517
Query: 353 --------QFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP 404
F ++ P + Q + + P P +S + +R
Sbjct: 518 RGAYYSPNHFAQLRSSPHWSAQRVRSHSFQTITGPIHPKFCRSPLMSTSHMSTSRISRRI 577
Query: 405 GGRRGAGPVQQTQQPLPIMPHQMPP--RGHAYRYPLGRNMQDFPFDMGAGSMLP-VPVDM 461
+R P + P +P Y+Y G N + F +G +P + +
Sbjct: 578 TTQRVTSPAHTLRPLCPPGTTFIPTLRSTQQYKY-TGANYNHYQF-IGIPPRIPTLTRQL 635
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
A +P GQ I + STAL P+ Q+ +LGE L+PL++ L A K+TGMLL
Sbjct: 636 VAHLP------GQEPAIPSTSTAL----PQPQKRVLGERLFPLIQDLHPTLAGKITGMLL 685
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ +E+L +L SPE L++K++EAM VL++ +++A
Sbjct: 686 DRQNSEILRMLNSPECLRSKISEAMAVLQAHNEKEA 721
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V F +A R + +
Sbjct: 111 SLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTD 170
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 171 MNLYIIKGKPVRLMWSQR 188
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 257/596 (43%), Positives = 352/596 (59%), Gaps = 57/596 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GNIFIKNLDKSID+KA++DTFS F
Sbjct: 70 ADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--R 122
GNILSCK+A D SKG+GFV FE +ESAQ AI+K+NGML+ K+V+VG F + R
Sbjct: 130 GNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLR 189
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E +F NV++KN + E L+K+F ++G ITSA VM D DGKSK FGFV FEN
Sbjct: 190 EMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENP 249
Query: 183 DDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+DA KAV ++ + +R+ YV +AQKK+ER ELK ++EQ E + ++QG+NLY+K
Sbjct: 250 EDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVK 309
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+++D+ LK+ F +G ITS KVM D +G SKG GFV F P+EA++A+ EMNGKM+
Sbjct: 310 NLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMM 369
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP--MYPPGPSG------LGQ 352
+KPLYVA+AQRKE+R+A+L +Q+ Q R ++ MP +Y PG G L
Sbjct: 370 CTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGSMPGTVYTPGTGGFFVSSTLQN 428
Query: 353 QFLYGQAPPAIIP---------------PQAGFGYQQQLV-----------PGMRPAGAP 386
Q + P A IP AGFG Q + G RP +
Sbjct: 429 QRAF--MPTATIPGAQMRGTTPRWNTIGAAAGFGVQSPYMVQSGGYGQAGRGGTRPTASS 486
Query: 387 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP 446
V + QQGQ G+ G Q L + +G + GR Q P
Sbjct: 487 -----AAVAMRAQQGQYGPGQTGVTRGGPQAQRLTAGSAMVQNQGTRSQQMGGRQTQ--P 539
Query: 447 FDMGAGSMLPVPVDMGAGIP-----RRDASVGQPM-PITALSTALANASPEQQRTLLGES 500
G M+ G P ++++ V Q P+TA LA A P++Q+ +LGE
Sbjct: 540 GKPNQGQMMYSSYSAITGRPGQVQSQQNSIVIQGQEPLTA--HMLAQALPQEQKQMLGER 597
Query: 501 LYPLVEQLERD-AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
+YPL+E++ + K+TGM+LEMD +E+L +LE+ E L++KV+EA VL S Q
Sbjct: 598 IYPLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELLQSKVSEAASVLASSKSQ 653
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 164/290 (56%), Gaps = 17/290 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ K + + +R+ ++ N+F+KNLD+S ++ + F +G I S
Sbjct: 79 MNFDMMYGKPIRIMW----SQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILS 134
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D + SK +GFV+FE + A KA+E +NG + ++ YVGK Q ++ R +E
Sbjct: 135 CKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLRE---- 190
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
M ET +F N+YIKN D +D E L++LFS+FG ITS VM D G SKG GFV
Sbjct: 191 ----MGETARRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFV 244
Query: 281 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMR 328
AF PE+A +A+ EM+ + + LYV AQ+K ER A L+ ++ Q +
Sbjct: 245 AFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 294
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/569 (42%), Positives = 338/569 (59%), Gaps = 45/569 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+R+SG GN+FIKNL+K+ID+KAL+DTFS+F
Sbjct: 38 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAF 97
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ +D +G SKG GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 98 GNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREA 156
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ TK F NV++KN + DE L +FG +G I S VM D GKSK FGFV+FE
Sbjct: 157 ELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERH 216
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + + YVG+AQKK +R ELK +FEQ ++ ++QG+NLY+KNL
Sbjct: 217 EDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNL 276
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A++EMNG+++ +
Sbjct: 277 DDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVAT 335
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLG------QQFL 355
KPLYVA+AQRKEER+A L Q+ Q M V GP+ P P Y P S Q
Sbjct: 336 KPLYVALAQRKEERQAHLTNQYIQRMASVRSGPN--PVNP-YQPASSSYSVAAVPQTQNC 392
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
P I P+ + Q G RP P PN PG A P
Sbjct: 393 VPCCPSQIAQPRPSARWIAQ---GSRP--HPFPNV-------------PGAIHPAAPRSS 434
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP----VDMGAGIPRR--- 468
P H H + P + + PV AG+
Sbjct: 435 LTTVRPSSSHVQVTTAHRITNTSAQITGQRPAPASSATATPVHSIPQYKYAAGVQNSQQH 494
Query: 469 -DASVGQPMPITA-----LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
+A + Q + + ++ +P++ + +LGE L+PL++ + A K+TGMLL+
Sbjct: 495 LNAQLAQQPAVCIQGQEPWTASMLVTAPQEPKQMLGERLFPLIQAMHPTLAGKITGMLLD 554
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+D +E L +LESP + ++ EA+ L++
Sbjct: 555 IDNSEPLRMLESPVSRCSRAEEAVATLQA 583
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 156/272 (57%), Gaps = 16/272 (5%)
Query: 57 LHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115
L++ FSS G ILS ++ D + +S G+ V FE A+ A+D +N +I K V +
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRI-- 59
Query: 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 175
+R+ ++ NVF+KNL+++ ++ L F +G I S V+ D +G SK G
Sbjct: 60 --MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHG 116
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL KE
Sbjct: 117 FVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG----TGTKEFT------ 166
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N+YIKN GD +DDE L LF FG I S KVM D G SKG GFV+F E+A +A+ EM
Sbjct: 167 NVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
NGK + K +YV AQ+K++R L+ +F Q+
Sbjct: 227 NGKELNGKHIYVGRAQKKDDRHTELKHKFEQV 258
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 247/568 (43%), Positives = 344/568 (60%), Gaps = 51/568 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+D +NF L K+IRIM+S RDP++RKSG GNIFIKNLDK+ID+K L+DTFS+FGN
Sbjct: 65 AERAIDTMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--RET 124
ILSCK+ + +G+SKG+GFV FE +E+A AI+KL+GML+NDK+VFVG F + E RE
Sbjct: 125 ILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREY 184
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+F NVF+KNL D L ++FGE+G++ S + D +GKS+ FGFV+FE +
Sbjct: 185 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHEC 244
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A K VE L+ K+F+ ++ +VG+AQKK+ER+ ELK +FE+ E ++QG+NLY+KNL D
Sbjct: 245 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDD 304
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPS---GISKGSGFVAFSTPEEASRALAEMNGKMIV 301
SI D+ L+E F+ +G ITS KVM D SKG GFV F++ EEA++A+ EMNG++I
Sbjct: 305 SITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 364
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRK+ER+A LQ Q+ Q M R+ +P G ++ PP
Sbjct: 365 SKPLYVALAQRKDERKAHLQQQYMQRVTTGM------RLQAFPTNQPQYGNLYM----PP 414
Query: 362 AI-----------IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 410
I P + Y Q + + P+ + P+V +GQ PGG R
Sbjct: 415 PIQQHPFRMSIRPTPRWSQVKYDQLVKLRSKIRFLIKPSQYGPMV----RGQMPGGPRAQ 470
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
V+ I P P + R Q + G + LP P + A IP A
Sbjct: 471 NGVRG------IAPITRFPANNYTARAGSRPNQSIIYKPGVRNPLPTPAE--AQIPAEQA 522
Query: 471 SVGQP------MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 524
+ QP P+ A T LA A P++Q+ LLGE LYP + QL + K+TGMLLE++
Sbjct: 523 A--QPKAPDTEQPLNA--TILAAAPPQEQKQLLGERLYPSIRQLYPELCGKITGMLLEIE 578
Query: 525 QTEVLHLLES---PEALKAKVAEAMEVL 549
+E+L +L++ P L+ KV EA+ VL
Sbjct: 579 NSELLAMLDTKSNPGLLQEKVQEAVTVL 606
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 159/289 (55%), Gaps = 15/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L L+D FS G +LS ++ D + +S G+ +V F+ E A+ AID
Sbjct: 11 ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N + K + + +R+ K+ N+F+KNLD++ ++ L F +G I
Sbjct: 71 TMNFDELKGKAIRIMW----SQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V + G+SK +GFV+FE + A KA+E L+G +D++ +VG+ + + ER +E
Sbjct: 127 SCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGD 186
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ +Q N++IKNL DD KL E+F E G++ S + D +G S+ GF
Sbjct: 187 RAKQFT----------NVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGF 236
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F T E A + + +++ K K ++V AQ+K ER+A L+ +F +++
Sbjct: 237 VSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLK 285
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 25/198 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 182
TVA +++V +L T+ L F + G + S V RD +S + +VNF+
Sbjct: 3 TVAPSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRP 62
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLY 238
+DA +A++ +N FD ELKG+ + M D + G+ N++
Sbjct: 63 EDAERAIDTMN---FD-----------------ELKGKAIRIMWSQRDPALRKSGVGNIF 102
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL +ID++ L + FS FG I SCKV + +G SKG GFV F T E A +A+ +++G
Sbjct: 103 IKNLDKTIDNKMLYDTFSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGM 162
Query: 299 MIVSKPLYVAVAQRKEER 316
++ K ++V + + ER
Sbjct: 163 LMNDKKVFVGRFKSRGER 180
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/569 (42%), Positives = 338/569 (59%), Gaps = 45/569 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+R+SG GN+FIKNL+K+ID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ +D +G SKG GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ TK F NV++KN + DE L +FG +G I S VM D GKSK FGFV+FE
Sbjct: 182 ELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + + YVG+AQKK +R ELK +FEQ ++ ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A++EMNG+++ +
Sbjct: 302 DDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLG------QQFL 355
KPLYVA+AQRKEER+A L Q+ Q M V GP+ P P Y P S Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYIQRMASVRSGPN--PVNP-YQPASSSYSVAAVPQTQNC 417
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
P I P+ + Q G RP P PN PG A P
Sbjct: 418 VPCCPSQIAQPRPSARWIAQ---GSRP--HPFPNV-------------PGAIHPAAPRSS 459
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP----VDMGAGIPRR--- 468
P H H + P + + PV AG+
Sbjct: 460 LTTVRPSSSHVQVTTAHRITNTSAQITGQRPAPASSATATPVHSIPQYKYAAGVQNSQQH 519
Query: 469 -DASVGQPMPITA-----LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
+A + Q + + ++ +P++ + +LGE L+PL++ + A K+TGMLL+
Sbjct: 520 LNAQLAQQPAVCIQGQEPWTASMLVTAPQEPKQMLGERLFPLIQAMHPTLAGKITGMLLD 579
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+D +E L +LESP + ++ EA+ L++
Sbjct: 580 IDNSEPLRMLESPVSRCSRAEEAVATLQA 608
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FSS G ILS ++ D + +S G+ V FE A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K V + +R+ ++ NVF+KNL+++ ++ L F +G I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL
Sbjct: 127 SCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG- 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
KE N+YIKN GD +DDE L LF FG I S KVM D G SKG GF
Sbjct: 185 ---TGTKEFT------NVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGF 235
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
V+F E+A +A+ EMNGK + K +YV AQ+K++R L+ +F Q+
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQV 283
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 247/587 (42%), Positives = 345/587 (58%), Gaps = 62/587 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL +NF + K +RIM+S RDPS+RK G GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L + FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEE-----------RRARLQAQFSQMRP-----VAMGPSVPPRMPMYPPG-- 346
LYVA+AQRKEE R A ++A +Q P +A P YPP
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRTASVRAVPNQRAPPSGYFMAAVPQTQNHAAYYPPSQV 422
Query: 347 ------PSGLGQ---QFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVV 395
P Q + P AI P P+ F MRPA + +P
Sbjct: 423 AQLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFS-------TMRPASSQVPRVMSTQR 475
Query: 396 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSM 454
Q G R A + +P Y+Y G RN Q
Sbjct: 476 VANTSTQTVGPRPAAAAAAAATPAVRTVPR--------YKYAAGVRNPQQH--------- 518
Query: 455 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
++ + + +V T ++ LA+A P++Q+ +LGE L+PL++ + A
Sbjct: 519 ----LNAQPQVTMQQPAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAG 574
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
K+TGMLLE+D +E+L++LESPE+L++K EA+ VL++ ++A A
Sbjct: 575 KITGMLLEIDNSELLYMLESPESLRSKAGEAVAVLQAHEAKEATEKA 621
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+ +N +I K + + +R+ K N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALHTMNFDVIKGKPLRIMW----SQRDPSLRKRGVGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/644 (39%), Positives = 357/644 (55%), Gaps = 123/644 (19%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ +AL+ LN+T + K RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF++
Sbjct: 119 VADGEKALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAA 178
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD +G SKG+GFV +E E+A AI +NGML+N+K+V+VG+ + K++R+
Sbjct: 179 FGNILSCKVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ 238
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ +K + NV++KN++ T+E+ ++ F ++G ITS+ + RD +GK + FGFVN+
Sbjct: 239 SKFEEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYST 298
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
AAK VE +NGK++ +E YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKN
Sbjct: 299 HASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKN 358
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPS------------------------------ 271
L D +DDEKL+ +F+EFG ITS KVMRD
Sbjct: 359 LSDEVDDEKLRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGD 418
Query: 272 ------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
G SKG GFV F+ P++A++A+AEMN +M+ KPLYVA+AQRKE R+++
Sbjct: 419 KKPEVKKPERKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQ 478
Query: 320 LQAQFS-----QMRPVAMGPSVPPRM--PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGY 372
L+A +M+ A +P M P+Y P GQQ P +PP AG G
Sbjct: 479 LEASIQARNQLRMQQQAAQAGLPQYMQPPVYYP-----GQQ-------PGFLPPAAGRGM 526
Query: 373 Q-QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP--------GGRRGAGPVQQTQQPL--- 420
Q GM P P F P Q +G P G GA P Q L
Sbjct: 527 PFPQGALGMPPVQGGRPGQFPPYPQQAGRGTIPPQVPMYPIGQFPGAYPQPNNPQFLAAM 586
Query: 421 ---------------------PIMP----------HQMPPRGHAYRYPLGR----NMQDF 445
P +P PP G LGR N +F
Sbjct: 587 QQVQQAAALAGGRGAPAGRGVPTVPIPQGIQAPGLAGYPPNGRPQNGNLGRGAGPNRSNF 646
Query: 446 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL-ANASPEQQRTLLGESLYPL 504
P GA P+ G+P G+ P L + L A +P+QQ+ +LGE+L+P
Sbjct: 647 PAGRGAPPAGPL------GVP------GELSPAALLQSQLAATTNPQQQKQILGENLFPK 694
Query: 505 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
V+ L+ + A K+TGMLLEMD E+++L+E AL AKV EAM V
Sbjct: 695 VQALQPELAGKITGMLLEMDNQELINLIEDEAALVAKVNEAMAV 738
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 158/290 (54%), Gaps = 15/290 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + + A+
Sbjct: 67 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKAL 126
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI K + +R+ KT N+F+KNLD + ++ L F +G I
Sbjct: 127 EELNYTLIKGKPCRI----MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNI 182
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D +G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+
Sbjct: 183 LSCKVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ---- 238
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+FE+ MK N+YIKN+ + +E+ +E FS++G ITS + RD G +G G
Sbjct: 239 SKFEE-MKANY-----TNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFG 292
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV +ST A++ + EMNGK + LYV AQ+K ER L+ + R
Sbjct: 293 FVNYSTHASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAAR 342
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 265/660 (40%), Positives = 359/660 (54%), Gaps = 141/660 (21%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 171 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKNLD ++E+ +++F +YG ITSA + RDG+ GKS+ FGFVNF + A
Sbjct: 231 MKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESA 290
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVE LN K++ ++ YVG+AQKK ERE+EL+ Q E A E K+QG+NLY+KNL D
Sbjct: 291 AAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 350
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSG--------------------------------- 272
IDDEKL++LF FG ITS +VMRD +G
Sbjct: 351 IDDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSAD 410
Query: 273 -----------------ISKGSG--FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
+ K G FV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK
Sbjct: 411 KSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRK 470
Query: 314 EERRARLQAQF-------SQMRPVAMGPSVPPRMP--MYPPGPSGLGQQFLYGQAPPAII 364
+ R+++L+A Q A G S P P YPPG G F+ PA
Sbjct: 471 DVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQG----FI-----PANA 521
Query: 365 PPQAGFGYQQQ---LVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----- 416
+ G + QQ ++PGM P G P + G GQ+ G RG P QQ
Sbjct: 522 AQRGGMAFGQQPGMVIPGM-PGGRPGQ------FAAGFPGQQGG--RGINPNQQLPPNAF 572
Query: 417 ---QQPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLP----VPVDM----- 461
Q LPI Q P P G +Y + + F G +P +P ++
Sbjct: 573 GLGAQGLPIGALQGPGGLPNGLSYPQAIAQVQASFGRGGGGRGQVPGIQGMPPNLANVPG 632
Query: 462 ---------------------------------GAGIPRRDASVGQPMPITALSTALANA 488
G +P RD SVG P T AL+ A
Sbjct: 633 MRAGGQGFAQGRGIPPQQGGMVRSGQAGRGTGPGQAMPPRDESVGGP---TLNLQALSAA 689
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
P QQ+ +LGE++YP ++ + + A K+TGMLLEMD E+L L++ AL+AKV EA+ V
Sbjct: 690 PPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLSLVDDDAALRAKVDEAINV 749
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 158/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KNL + +E+ +ELF ++G ITS + R
Sbjct: 223 DRQSKFEEMKANF-------------TNVYVKNLDTEVSNEEFRELFEKYGEITSASISR 269
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV F E A+ A+ E+N K + LYV AQ+K ER L+ Q
Sbjct: 270 DGETGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAA 329
Query: 328 R 328
R
Sbjct: 330 R 330
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 247/587 (42%), Positives = 345/587 (58%), Gaps = 62/587 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL +NF + K +RIM+S RDPS+RK G GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L + FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEE-----------RRARLQAQFSQMRP-----VAMGPSVPPRMPMYPPG-- 346
LYVA+AQRKEE R A ++A +Q P +A P YPP
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRTASVRAVPNQRAPPSGYFMAAVPQTQNHAAYYPPSQV 422
Query: 347 ------PSGLGQ---QFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVV 395
P Q + P AI P P+ F MRPA + +P
Sbjct: 423 AQLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFS-------TMRPASSQVPRVMSTQR 475
Query: 396 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSM 454
Q G R A + +P Y+Y G RN Q
Sbjct: 476 VANTSTQTVGPRPAAAAAAAATPAVRTVPR--------YKYAAGVRNPQQH--------- 518
Query: 455 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
++ + + +V T ++ LA+A P++Q+ +LGE L+PL++ + A
Sbjct: 519 ----LNAQPQVTMQQPAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAG 574
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
K+TGMLLE+D +E+L++LESPE+L++K EA+ VL++ ++A A
Sbjct: 575 KITGMLLEIDNSELLYMLESPESLRSKADEAVAVLQAHEAKEATEKA 621
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+ +N +I K + + +R+ K N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALHTMNFDVIKGKPLRIMW----SQRDPSLRKRGVGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 270/662 (40%), Positives = 355/662 (53%), Gaps = 146/662 (22%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 171 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKNLD T+E+ +++FG+YG ITSA + D + GKS+ FGFVNF + A
Sbjct: 231 MKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESA 290
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVE LN K+F ++ YVG+AQKK ERE+EL+ Q E A E K+QG+NLY+KNL D
Sbjct: 291 AAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 350
Query: 246 IDDEKLKELFSEFGTITSC----------------------------------------- 264
IDDEKL++LF FG ITS
Sbjct: 351 IDDEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSD 410
Query: 265 -----------KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
K + G SKG GFV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK
Sbjct: 411 KSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRK 470
Query: 314 EERRARLQAQF-------SQMRPVAMGPSVPPRMP--MYPPGPSGLGQQFLYGQAPPAII 364
+ R+++L+A Q A G S P P YPPG G F+ PA
Sbjct: 471 DVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQG----FI-----PANA 521
Query: 365 PPQAGFGYQQQ---LVPGMRPAGAPMPNFFVPVVSQGQ-QGQRPG--GRRGAGPVQQT-- 416
+ G + QQ ++PGM P G P GQ G PG G RG P QQ
Sbjct: 522 GQRGGMAFGQQPGMVLPGM-PGGRP-----------GQFAGGFPGQQGGRGINPNQQLPP 569
Query: 417 ------QQPLPIMPHQMP---PRGHAYRYPLGR----------------NMQDFPFDMG- 450
Q LP+ Q P P G +Y + + MQ P MG
Sbjct: 570 NAFGMGAQGLPMGALQGPGGLPNGLSYPQAIAQVQASFGRGGGGRGQAPGMQGMPPSMGN 629
Query: 451 --------------------AGSMLPVPVDMGA----GIPRRDASVGQPMPITALSTALA 486
G P GA G+P RD S G P T AL+
Sbjct: 630 APGMRAGGQAFTQGRGMPPQQGVARPGQAGRGAGPAQGMPPRDESAGGP---TLNLQALS 686
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
A P QQ+ +LGE++YP ++ + + A K+TGMLLEMD E+L L++ AL+AKV EA+
Sbjct: 687 AAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLSLVDDEAALRAKVDEAI 746
Query: 547 EV 548
V
Sbjct: 747 NV 748
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 157/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KNL + +E+ +ELF ++G ITS +
Sbjct: 223 DRQSKFEEMKANF-------------TNVYVKNLDTEVTNEEFRELFGKYGDITSASITH 269
Query: 269 DP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV F E A+ A+ E+N K + LYV AQ+K ER L+ Q
Sbjct: 270 DSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAA 329
Query: 328 R 328
R
Sbjct: 330 R 330
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 249/629 (39%), Positives = 353/629 (56%), Gaps = 106/629 (16%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF++FGNIL
Sbjct: 116 KALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNIL 175
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 176 SCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 235
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN++ TDE+ +++F ++G +TS+ + RD +GK++ FGFVNF + AA
Sbjct: 236 MKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAA 295
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNLGD +
Sbjct: 296 QAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDV 355
Query: 247 DDEKLKELFSEFGTITSCKVMRDP------------------------------------ 270
DD+KL+ +FSE+G ITS KVMRD
Sbjct: 356 DDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKK 415
Query: 271 ----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G SKG GFV FS P++A++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A
Sbjct: 416 GDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQA 475
Query: 327 MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 386
+ M + +G+ QQ++ QAP Q GF PG R G P
Sbjct: 476 RNQLRMQQAA---------AQAGMPQQYM--QAPVYYAGQQPGF----MPAPGGR--GVP 518
Query: 387 MP-NFFVPVVSQGQQGQRP---GGRRGAGPVQQTQQPLPIM---PHQMPPRGHAYRYPLG 439
P VP V G+ GQ P GGR G P Q PI P PP Y +G
Sbjct: 519 FPQGGIVPGVQGGRPGQYPYQQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAMG 578
Query: 440 RNMQD------------------FPFDMGAGSMLP------VPVDMGA-GIPRRDASV-- 472
+ P + G +P P + G G PR +A+
Sbjct: 579 QVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNANFMA 638
Query: 473 ---------GQPMPITA---LSTALANA-SPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
G P ++A L LA P+ Q+ ++GE+L+P ++ ++ A K+TGM
Sbjct: 639 AGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGM 698
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEV 548
LLEMD E+++L E AL KV EA+ V
Sbjct: 699 LLEMDNAELINLFEDDNALNVKVQEALAV 727
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 161/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT N+F+KNLD + ++ L F +G I
Sbjct: 119 EELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNI 174
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 175 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 234
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + + DE+ +ELF++FG +TS + RD G ++
Sbjct: 235 EMKANF-------------TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTR 281
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 282 GFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 250/630 (39%), Positives = 353/630 (56%), Gaps = 107/630 (16%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF++FGNIL
Sbjct: 116 KALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNIL 175
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 176 SCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 235
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN++ TDE+ +++F ++G +TS+ + RD +GKS+ FGFVNF + AA
Sbjct: 236 MKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAA 295
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNLGD +
Sbjct: 296 QAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDV 355
Query: 247 DDEKLKELFSEFGTITSCKVMRDP------------------------------------ 270
DD+KL+ +FSE+G ITS KVMRD
Sbjct: 356 DDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEK 415
Query: 271 -----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325
G SKG GFV FS P++A++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A
Sbjct: 416 KGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQ 475
Query: 326 QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGA 385
+ M + +G+ QQ++ QAP Q GF PG R G
Sbjct: 476 ARNQLRMQQAA---------AQAGMPQQYM--QAPVYYAGQQPGF----MPAPGGR--GV 518
Query: 386 PMP-NFFVPVVSQGQQGQRP---GGRRGAGPVQQTQQPLPIM---PHQMPPRGHAYRYPL 438
P P VP V G+ GQ P GGR G P Q PI P PP Y +
Sbjct: 519 PFPQGGIVPGVQGGRPGQYPYQQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAM 578
Query: 439 GRNMQD------------------FPFDMGAGSMLP------VPVDMGA-GIPRRDASV- 472
G+ P + G +P P + G G PR +A+
Sbjct: 579 GQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNANFM 638
Query: 473 ----------GQPMPITA---LSTALANA-SPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
G P ++A L LA P+ Q+ ++GE+L+P ++ ++ A K+TG
Sbjct: 639 AAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITG 698
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
MLLEMD E+++L E AL KV EA+ V
Sbjct: 699 MLLEMDNAELINLFEDDNALNVKVQEALAV 728
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 161/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT N+F+KNLD + ++ L F +G I
Sbjct: 119 EELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNI 174
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 175 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 234
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + + DE+ +ELF++FG +TS + RD G S+
Sbjct: 235 EMKANF-------------TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSR 281
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 282 GFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 268/667 (40%), Positives = 354/667 (53%), Gaps = 156/667 (23%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 171 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKNLD T+E+ +++FG+YG ITSA + D + GKS+ FGFVNF + A
Sbjct: 231 MKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESA 290
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVE LN K+F ++ YVG+AQKK ERE+EL+ Q E A E K+QG+NLY+KNL D
Sbjct: 291 AAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 350
Query: 246 IDDEKLKELFSEFGTITSC----------------------------------------- 264
IDDEKL++LF FG ITS
Sbjct: 351 IDDEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSD 410
Query: 265 -----------KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
K + G SKG GFV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK
Sbjct: 411 KSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRK 470
Query: 314 EERRARLQAQF-------SQMRPVAMGPSVPPRMP--MYPPG-----PSGLGQQ--FLYG 357
+ R+++L+A Q A G S P P YPPG P+ GQ+ +G
Sbjct: 471 DVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPTNAGQRGGMAFG 530
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRP----AGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV 413
Q P ++P +PG RP G P GQQG RG P
Sbjct: 531 QQPGMVLPG----------MPGGRPGQFAGGFP-----------GQQGG-----RGINPN 564
Query: 414 QQT--------QQPLPIMPHQMP---PRGHAYRYPLGR----------------NMQDFP 446
QQ Q LP+ Q P P G +Y + + MQ P
Sbjct: 565 QQLPPNAFGMGAQGLPMGALQGPGGLPNGLSYPQAIAQVQASFGRGGGGRGQAPGMQGMP 624
Query: 447 FDMG---------------------AGSMLPVPVDMGA----GIPRRDASVGQPMPITAL 481
MG G P GA G+P RD S G P T
Sbjct: 625 PSMGNAPGMRAGGQAFTQGRGMPPQQGVARPGQAGRGAGPAQGMPPRDESAGGP---TLN 681
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
AL+ A P QQ+ +LGE++YP ++ + + A K+TGMLLEMD E+L L++ AL+AK
Sbjct: 682 LQALSAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLSLVDDEAALRAK 741
Query: 542 VAEAMEV 548
V EA+ V
Sbjct: 742 VDEAINV 748
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 157/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KNL + +E+ +ELF ++G ITS +
Sbjct: 223 DRQSKFEEMKANF-------------TNVYVKNLDTKVTNEEFRELFGKYGDITSASITH 269
Query: 269 DP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV F E A+ A+ E+N K + LYV AQ+K ER L+ Q
Sbjct: 270 DSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAA 329
Query: 328 R 328
R
Sbjct: 330 R 330
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 257/585 (43%), Positives = 356/585 (60%), Gaps = 54/585 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G S+G GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + D L++IF +G S VM D G+SK FGFVNFE
Sbjct: 182 EFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E V ++QG+NLY+KNL
Sbjct: 242 EEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ Q MR + +G PP PP P +
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQTRAAF 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM------PNFFVPVVSQGQQGQR------ 403
Y +P + P + Q P PA P+ P + +S +Q
Sbjct: 421 YSPSPVVPVRPATRWSAQPTRPPPY-PAATPILRAAVQPRRLLSNISTMRQASTQVPRVP 479
Query: 404 PGGRRGAGPVQQTQQPLPIMPHQMPPRGH-AYRYPLG-RNMQDFPFDMGAGSMLPVPVDM 461
P +R A QT +P RG Y+Y L RN+Q MG+
Sbjct: 480 PQAQRVANIGTQTISAR--VPSSPTLRGAPQYKYSLAVRNIQ----PMGS---------- 523
Query: 462 GAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
+P VG+P P+TA + LA A P++Q+ ++GE LYPL+ + A
Sbjct: 524 ---VPPGAQQVGEPAVHIQGQEPLTA--SMLAAAPPQEQKQMIGERLYPLIHAMHASLAG 578
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN 559
K+TGMLLE+D +E+L LLESPE+L +K+ EA+ VL++ +A++
Sbjct: 579 KITGMLLEIDNSELLLLLESPESLHSKIEEAVAVLQAHQATEASH 623
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD S S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPVRIMWSQR 89
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/553 (43%), Positives = 330/553 (59%), Gaps = 57/553 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+ALD LN+T + + RIM+S RDPS+RK GTGN+FIKNLD +ID+KALHDTFS+FG IL
Sbjct: 122 KALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 181
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G +KG+GFV F++ ESA AI+ +NGML+NDK+V+VGH + ++ER++ A
Sbjct: 182 SCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEA 241
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KNLD T+++ +FG++G ITS +++D + K + FGFVN+ N + A
Sbjct: 242 LKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQ 301
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K++ ++ YVG+AQKK ERE+EL+ +EQ E ++K+QG+NL+IKNL D +
Sbjct: 302 KAVDELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEV 361
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+LK FS FGTITS K+M D G SKG GFV ++TPEEA++A+ EMN +M+ KPLY
Sbjct: 362 DDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLY 421
Query: 307 VAVAQRKEERRARLQAQ------FSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 360
VA+AQRKE RR++L+AQ F + VA +P + GP +YG P
Sbjct: 422 VALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPA-VQYGATGP------LIYG--P 472
Query: 361 PAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG--GRRGAGPVQQTQQ 418
P A G +VPG RPG G GPV +
Sbjct: 473 GGYPIPAAVNGRGMPMVPGHNGPMPMY---PGMPPLSSLLEVRPGYPGMNARGPVPAQGR 529
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 478
P+ +MP +P G P + +P G P
Sbjct: 530 PM-MMPGSVPSAG------------------------PAEAEAVPAVP------GMPERF 558
Query: 479 TALSTALANASPEQQRT-LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 537
TA A A PE+ R +LGE LYP V E + K+TGMLLEM +E+L LLE A
Sbjct: 559 TAADLA---AVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSA 615
Query: 538 LKAKVAEAMEVLR 550
L +V EA+ VL+
Sbjct: 616 LNERVNEAIGVLQ 628
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 164/313 (52%), Gaps = 21/313 (6%)
Query: 17 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 76
TP N S+ PS + ++++ LD S+ L + F+S G + S ++ D
Sbjct: 48 TPTNASSVAT------PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDA 101
Query: 77 -SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVF 135
+ +S G+ +V F N E + A+D+LN LI + + +R+ K NVF
Sbjct: 102 VTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI----MWSQRDPSLRKMGTGNVF 157
Query: 136 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
+KNLD + ++ L F +G I S V D G +K +GFV+F++ + A A+E +NG
Sbjct: 158 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 217
Query: 196 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+D++ YVG + ER+ ++ +A+K N+YIKNL I +++ +LF
Sbjct: 218 LLNDKKVYVGHHVSRRERQSKV-----EALKANFT-----NVYIKNLDTEITEQEFSDLF 267
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
+FG ITS +++D + +G GFV ++ E A +A+ E+N K K LYV AQ+K E
Sbjct: 268 GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHE 327
Query: 316 RRARLQAQFSQMR 328
R L+ + QM+
Sbjct: 328 REEELRKAYEQMK 340
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/590 (43%), Positives = 345/590 (58%), Gaps = 53/590 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GNIFIKNLDKSID+KA++DTFS F
Sbjct: 70 ADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--R 122
GNILSCK+A D SKG+GFV FE +ESAQ AI+K+NGML+ K+V+VG F + R
Sbjct: 130 GNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLR 189
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E +F NV++KN + E L+K+F ++G ITSA VM D DGKSK FGFV FEN
Sbjct: 190 EMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENP 249
Query: 183 DDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+DA KAV ++ + +R+ YV +AQKK+ER ELK ++EQ E + ++QG+NLY+K
Sbjct: 250 EDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVK 309
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+++D+ LK+ F +G ITS KVM D +G SKG GFV F P+EA++A+ EMNGKM+
Sbjct: 310 NLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMM 369
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP--MYPPGPSG------LGQ 352
+KPLYVA+AQRKE+R+A+L +Q+ Q R ++ MP +Y PG G L
Sbjct: 370 CTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGSMPGTVYTPGTGGFFVSSTLQN 428
Query: 353 QFLYGQAPPAIIP---------------PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS- 396
Q + P A IP AGFG Q + G P S
Sbjct: 429 QRAF--MPTATIPGAQMRGTTPRWNTIGAAAGFGVQSPYMVQSGAYGQGGRGGTRPTASS 486
Query: 397 --------QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFD 448
QGQ G G GP Q M R GR Q P
Sbjct: 487 AAVAMRAQQGQYGPAQAGVTRGGPQAQRMAAGGAMVQNQGTRSQQMG---GRQAQ--PGK 541
Query: 449 MGAGSMLPVPVDMGAGIP-----RRDASVGQPM-PITALSTALANASPEQQRTLLGESLY 502
G M+ G P ++++ V Q P+TA LA A P++Q+ +LGE +Y
Sbjct: 542 PSQGQMMYSSYSAITGRPGQVQSQQNSIVIQGQEPLTA--HMLAQALPQEQKQMLGERIY 599
Query: 503 PLVEQLERD-AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
PL+E++ + K+TGM+LEMD +E+L +LE+ E L++KV+EA VL S
Sbjct: 600 PLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELLQSKVSEAASVLAS 649
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 164/290 (56%), Gaps = 17/290 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ K + + +R+ ++ N+F+KNLD+S ++ + F +G I S
Sbjct: 79 MNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILS 134
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D + SK +GFV+FE + A KA+E +NG + ++ YVGK Q ++ R +E
Sbjct: 135 CKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLRE---- 190
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
M ET +F N+YIKN D +D E L++LFS+FG ITS VM D G SKG GFV
Sbjct: 191 ----MGETARRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFV 244
Query: 281 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMR 328
AF PE+A +A+ EM+ + + LYV AQ+K ER A L+ ++ Q +
Sbjct: 245 AFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 294
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 266/634 (41%), Positives = 366/634 (57%), Gaps = 85/634 (13%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL+VLN+ L + IRIM+S RDPS+RKSG GNIFIKNLDKSI+ K L+DTFS FG
Sbjct: 67 AEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKI D +GQSKG+GFV FE +E A+ AI+K+N M+I D+ V+VG F+ K ER++ A
Sbjct: 127 ILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQA 186
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNN+++KN T +E LK++F E+G I SA VM+D +GKSK FGFV F + D A
Sbjct: 187 RKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAE 246
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-GLNLYIKNLGDS 245
AV+ ++GK+ + R Y +AQ+K ER++ELK + E+ E + +NLY+KNL D+
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDN 306
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDD++L+E FS G+ITS KVM+D + SKG GFV F+ PE+A+RA+ +MNG +I SKPL
Sbjct: 307 IDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPL 366
Query: 306 YVAVAQRKEERRARL----QAQFSQMR-PVA-MGPSVPPR---MPMYPPG---------P 347
YVA+AQRKE+RRA+L Q + +Q R PVA M P+VP +PP P
Sbjct: 367 YVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHP 426
Query: 348 SG--LGQQFLYGQAP--PAII------PPQAGF----------------GYQQQLVPG-- 379
SG L Q + +A PA I PP AG+ + Q PG
Sbjct: 427 SGAVLSSQPRWNRAAGIPAQIGGLPNRPPVAGYYPSAPNPAAITANQMASFAQFRTPGVN 486
Query: 380 --MRPAG-APMPNFFVPVV-----SQGQQGQRPGGRRG----------AGPVQQTQQPLP 421
M P G + +P+ + + QQ Q+ GR+G AG + Q+P
Sbjct: 487 RPMVPNGMSSIPSTHLQTAAVFNQTANQQRQQASGRQGVVVPQVLGATAGGL--NQRPTA 544
Query: 422 IMPHQMPPRGH-AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP--MPI 478
PP + A R + + G ++ ++ R+ S QP +P
Sbjct: 545 ASVVAGPPSVNPAMRQQVASQVPRAVMHSGMSNITSTATNVRFHQTARNVS-AQPTLVPA 603
Query: 479 TALST--------------ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 524
++ST ALA S E Q+ LGE LYP ++ + + A K+TGMLL +D
Sbjct: 604 GSMSTLLQPLGDQGQLTISALAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVD 663
Query: 525 QTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 558
EV++LLES E L+AK E + VLRS QQ +
Sbjct: 664 NAEVINLLESEELLRAKCEEGINVLRSSQNQQGD 697
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 162/290 (55%), Gaps = 21/290 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + AL FS G +LS ++ D + S G+G+V FE+ + A+ A++
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
LN + +G +R +R+ K+ N+F+KNLD+S ++L F +G I
Sbjct: 74 LN------YESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRI 127
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S ++ D +G+SK +GFV+FE + A +A+E +N DR YVGK K+ER+ + +
Sbjct: 128 LSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
K + NLYIKN D+EKLKE+F+EFG I S VM+D G SKG G
Sbjct: 188 ------------KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFG 235
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F P+ A A+ M+GK I + LY A AQRKEER+ L+ + + R
Sbjct: 236 FVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQR 285
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 233 QGL---NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
QGL +LY+ +L + D L+ FSE G + S +V RD + S G G+V F P+ A
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHA 67
Query: 289 SRALAEMNGKMIVSKPLYVAVAQR 312
+AL +N + ++ +P+ + +QR
Sbjct: 68 EQALEVLNYESLMGRPIRIMWSQR 91
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 269/632 (42%), Positives = 352/632 (55%), Gaps = 112/632 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 108 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 167
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 168 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 227
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+D+ TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF D A
Sbjct: 228 MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQ 287
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 288 AAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 347
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+ELFS FGTITS KVMRD
Sbjct: 348 DDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKES 407
Query: 272 ------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++
Sbjct: 408 EEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 467
Query: 320 LQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPPQAGFGYQ 373
L+A + + P+ M P G GQQ GQ PQ G
Sbjct: 468 LEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM--- 524
Query: 374 QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQMP-- 428
+PG RP P P P GQQG RG GP QQ Q +P+ Q P
Sbjct: 525 VMGIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFQGIPMGAMQGPGG 572
Query: 429 -PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGIPRRDASVG------------- 473
P G Y M F GAG VP + MG GI G
Sbjct: 573 IPNGMGY-----PQMAQVQFGRGAGGRGQVPGMPMGQGIRGPGYGQGRGGAPVQGGPRPQ 627
Query: 474 ---------------QPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
+ +P T TA L+ P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 628 GGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKI 687
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
TGMLLEMD E+L LLE EAL+AKV EA+ V
Sbjct: 688 TGMLLEMDNNELLGLLEDEEALRAKVDEALSV 719
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+YIKN+ + DE+ +++F +FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G S+G GFV FST + A A+ EMN K I + LYV AQ+K ER L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 269/630 (42%), Positives = 352/630 (55%), Gaps = 110/630 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 108 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 167
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 168 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 227
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+D+ TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF D A
Sbjct: 228 MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQ 287
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 288 AAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 347
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+ELFS FGTITS KVMRD
Sbjct: 348 DDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEE 407
Query: 272 ----------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 321
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+
Sbjct: 408 EAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLE 467
Query: 322 AQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPPQAGFGYQQQ 375
A + + P+ M P G GQQ GQ PQ G
Sbjct: 468 ASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM---VM 524
Query: 376 LVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQMP---P 429
+PG RP P P P GQQG RG GP QQ Q +P+ Q P P
Sbjct: 525 GIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFQGIPMGAMQGPGGIP 572
Query: 430 RGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGIPRRDASVG--------------- 473
G Y M F GAG VP + MG G+ G
Sbjct: 573 NGMGY-----PQMAQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGAPVQGGPRPQGG 627
Query: 474 -------------QPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
+ +P T TA L P QQ+ +LGE+LYP ++ + + A K+TG
Sbjct: 628 RGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITG 687
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
MLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 688 MLLEMDNTELLGLLEDEEALRAKVDEALSV 717
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+YIKN+ + DE+ +++F +FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G S+G GFV FST + A A+ EMN K I + LYV AQ+K ER L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 250/562 (44%), Positives = 329/562 (58%), Gaps = 68/562 (12%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
+ + A RALD LN TP+ K RIM+S RDPS+RKSG GN+FIKNLDK IDHKAL+DTF
Sbjct: 59 YNAADAERALDTLNNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTF 118
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S+FGNILSCK+ TD + SKGFGFV +E+++SA AI K+NGM+IN ++VFVG F +E
Sbjct: 119 SAFGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKE 178
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFE 180
R + KF NVF KNL E T + LK++ YGTIT+ +M D GKSK F F NFE
Sbjct: 179 RGQ-PTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFE 237
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+AD A VE NGK F + Y G+AQKK ERE ELK FE K+QG+NLYIK
Sbjct: 238 SADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREAELKHTFET-------KYQGVNLYIK 290
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMR-DPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
N+ DSID++KL+E+FS+FGTITS VM+ D + SKG GFV +++P+EA+RA+ EMNG+M
Sbjct: 291 NIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRM 350
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
I +KPLYVA+AQRK+ RRA+L+ Q Q M ++ P Y GP + A
Sbjct: 351 IGTKPLYVALAQRKDIRRAQLEMQHQQKFKAGMRQTM---APAYSGGP------VFFTPA 401
Query: 360 P--PAIIPPQAGFGYQQQLVPGMR-----PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGP 412
P PA++ QQ++P R P G P + + V G Q RP G+R GP
Sbjct: 402 PVTPAVV--------YQQMMPRPRNWNGAPVGVPGNQYGMNYVRGGGQ-PRPNGQRPTGP 452
Query: 413 VQQTQQPLPIMP--HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
Q+P P Q P VD P+ +
Sbjct: 453 RPNGQRPDSAQPIATQQP-----------------------------AVDQATQQPQAAS 483
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVL 529
Q T LS+ LA + +QQ LGE LYPL+ + + A K+TGMLL+ + E+
Sbjct: 484 GASQEAAPT-LSSILALPTRDQQNVALGELLYPLIHNSQPELAGKITGMLLDSLPVEELF 542
Query: 530 HLLESPEALKAKVAEAMEVLRS 551
L + + L K+ EA++VL +
Sbjct: 543 ALTQRSDLLNEKIKEAIDVLNA 564
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + ++ L E+F++ G +++ +V RD + S +V + +A RAL
Sbjct: 11 SLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALDT 70
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N I KP + +QR R
Sbjct: 71 LNNTPIRGKPCRIMWSQRDPSLR 93
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 266/632 (42%), Positives = 366/632 (57%), Gaps = 83/632 (13%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL+VLN+ L + IRIM+S RDPS+RKSG GNIFIKNLDKSI+ K L+DTFS FG
Sbjct: 67 AEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKI D +GQSKG+GFV FE +E A+ AI+K+N M+I D+ V+VG F+ K ER++ A
Sbjct: 127 ILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQA 186
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNN+++KN T +E LK++F E+G I SA VM+D +GKSK FGFV F + D A
Sbjct: 187 RKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAE 246
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-GLNLYIKNLGDS 245
AV+ ++GK+ + R Y +AQ+K ER++ELK + E+ E + +NLY+KNL D+
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDN 306
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDD++L+E FS G+ITS KVM+D + SKG GFV F+ PE+A+RA+ +MNG +I SKPL
Sbjct: 307 IDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPL 366
Query: 306 YVAVAQRKEERRARL----QAQFSQMR-PVA-MGPSVPPR---MPMYPPG---------P 347
YVA+AQRKE+RRA+L Q + +Q R PVA M P+VP +PP P
Sbjct: 367 YVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHP 426
Query: 348 SG--LGQQFLYGQAP--PAII------PPQAGF----------------GYQQQLVPG-- 379
SG L Q + +A PA I PP AG+ + Q PG
Sbjct: 427 SGAVLSSQPRWNRAAGIPAQIGGLPNRPPVAGYYPSAPNPAAITANQMASFAQFRTPGVN 486
Query: 380 --MRPAG-APMPNFFVPVV-----SQGQQGQRPGGRRG----------AGPVQQTQQPLP 421
M P G + +P+ + + QQ Q+ GR+G AG + Q
Sbjct: 487 RPMVPNGMSSIPSTHLQTAAVFNQTANQQRQQASGRQGVVVPQVLGATAGGLNQRPTAAS 546
Query: 422 IM---PHQMP--------PRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 468
++ P P PR H+ + + F A ++ P + AG
Sbjct: 547 VVAGPPSVNPAMRVASQVPRAVMHSGMSNITSTATNVRFHQTARNVSAQPTLVPAG---S 603
Query: 469 DASVGQPMPITALST--ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+++ QP+ T ALA S E Q+ LGE LYP ++ + + A K+TGMLL +D
Sbjct: 604 MSTLLQPLGDQGQLTISALAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNA 663
Query: 527 EVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 558
EV++LLES E L+AK E + VLRS QQ +
Sbjct: 664 EVINLLESEELLRAKCEEGINVLRSSQNQQGD 695
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 162/290 (55%), Gaps = 21/290 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + AL FS G +LS ++ D + S G+G+V FE+ + A+ A++
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
LN + +G +R +R+ K+ N+F+KNLD+S ++L F +G I
Sbjct: 74 LN------YESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRI 127
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S ++ D +G+SK +GFV+FE + A +A+E +N DR YVGK K+ER+ + +
Sbjct: 128 LSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
K + NLYIKN D+EKLKE+F+EFG I S VM+D G SKG G
Sbjct: 188 ------------KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFG 235
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F P+ A A+ M+GK I + LY A AQRKEER+ L+ + + R
Sbjct: 236 FVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQR 285
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 233 QGL---NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
QGL +LY+ +L + D L+ FSE G + S +V RD + S G G+V F P+ A
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHA 67
Query: 289 SRALAEMNGKMIVSKPLYVAVAQR 312
+AL +N + ++ +P+ + +QR
Sbjct: 68 EQALEVLNYESLMGRPIRIMWSQR 91
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 263/655 (40%), Positives = 359/655 (54%), Gaps = 132/655 (20%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 179
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VG+ + K++R++
Sbjct: 180 SCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEE 239
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN++ T+E+ +++F +YG +TS+ + RD +GKS+ FGFVNF AA
Sbjct: 240 MKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAA 299
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNGK+F +E YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D +
Sbjct: 300 KAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDV 359
Query: 247 DDEKLKELFSEFGTITSCKVMRD-----PSGI---------------------------- 273
DD+KL+++FSEFG ITS KVMRD P+G
Sbjct: 360 DDDKLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKT 419
Query: 274 ----------SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 323
SKG GFV FS P++A++A+AEMN +M+ KPLYVA+AQRK+ R+++L+A
Sbjct: 420 EKKVERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEAS 479
Query: 324 FSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP-PQAGFGYQQQLVPGMRP 382
+ M + +GL QQ++ QAP P Q GF L PG R
Sbjct: 480 IQARNQLRMQQAA---------AQAGLPQQYM--QAPVYYAPGQQPGF-----LPPGGRG 523
Query: 383 AGAPMPNFFVPVVSQGQQGQRP-----GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP 437
P +P V G+ GQ P GGR G Q LPI P P G YP
Sbjct: 524 MPFPQGGIGMPAVQGGRPGQFPPYAQQGGRGG------MPQQLPIYPLGQFPPG---TYP 574
Query: 438 LGRNMQ------------------------------DFPFDMGAGSML--------PVPV 459
N Q P M G L P
Sbjct: 575 QPNNPQFLAAIQQVQQQAAALGTGRGGPGGRGMQGMPIPQGMPGGPGLAGYPPNGRPQNG 634
Query: 460 DM-GAGIPRRDASV-----GQP----------MPITAL--STALANASPEQQRTLLGESL 501
+M G G P R S G P + TAL S A + Q+ +LGE+L
Sbjct: 635 NMAGRGGPNRGGSFAAGRGGVPPAGPVGATGELSATALLQSQLAATTNIHAQKQILGENL 694
Query: 502 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 556
+P ++ ++ + A K+TGMLLEMD E++HLLE AL AKV EAM V + Q
Sbjct: 695 FPKIQAIQPELAGKITGMLLEMDNNELVHLLEDEAALLAKVNEAMAVYDEYVKSQ 749
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 162/293 (55%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + + + A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKAL 122
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 178
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+ +
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFE 238
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + +E+ +ELF+++G +TS + RD G S+
Sbjct: 239 EMKANF-------------TNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSR 285
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 286 GFGFVNFTTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAAR 338
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 244/586 (41%), Positives = 345/586 (58%), Gaps = 65/586 (11%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + + RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG IL
Sbjct: 96 RALEHLNYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEIL 155
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA-- 126
SCK+ D G+S+GF FV ++ E+A AI ++GM++NDK+VFVGH + K+ER++ A
Sbjct: 156 SCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEE 215
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ F NVFVKN+D S T+++ + + ++G S + D +GKSK FGFVN+ + + A
Sbjct: 216 QRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAE 275
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ + G+AQK+ ER+ EL+ E+ +E K G+NLY+KNL D
Sbjct: 276 KAVDELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEW 335
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F FGTITSCKVM+D G+S+ GFV +S+PEEA++A++EMNGKMI SKPLY
Sbjct: 336 DDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKPLY 395
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPG-PSGLGQQFLYGQAPPAIIP 365
VA+AQR+E RR L++Q +Q R+P P G P G Q +YG P
Sbjct: 396 VALAQRREARRQALESQIAQ--------RTNQRVPYAPGGMPQGYMNQPMYG------YP 441
Query: 366 PQAGFG------------YQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV 413
P G+G Y Q++ RP P P Q G
Sbjct: 442 PMPGYGQPGMMPMRPMMGYNPQMMQ-QRPRYPPAP-----------MNQPGMGMPPMPYG 489
Query: 414 QQTQQPLPIMPHQMPPR--------GHAYRYPL-------GRNMQDFPFDMGAGSMLP-- 456
QQ MP+ +PP G + R P GR + P +G S LP
Sbjct: 490 MPPQQ----MPYAIPPNYPVRPGPGGISARPPTSAPAPAQGR-INGGPSPVGYSSGLPGS 544
Query: 457 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
+P M P D QP + ALA A +Q+ +LGE+LYPL+ + + A K+
Sbjct: 545 MPRQMPMARPGYDQV--QPQQNKLSAQALARAPLAEQKQMLGEALYPLIGATQPELAGKI 602
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPAD 562
TGMLLEMD +E+LHL+ESP AL KV EA++VL ++ + D
Sbjct: 603 TGMLLEMDNSELLHLIESPPALLEKVDEALKVLEEWGKEGGHADGD 648
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 41 SLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 100
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL +SID++ L
Sbjct: 101 LNYSAIKGRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDESIDNKAL 144
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D G S+G FV + T E A A+ ++G M+ K ++V
Sbjct: 145 HDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHI 204
Query: 312 RKEERRARLQAQ 323
K+ER+++ + Q
Sbjct: 205 GKKERQSKAEEQ 216
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 292
G +LY+ L S+ + L E+F+ G + S +V RD + S G +V + + RAL
Sbjct: 39 GASLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 98
Query: 293 AEMNGKMIVSKPLYVAVAQR 312
+N I +P + +QR
Sbjct: 99 EHLNYSAIKGRPCRIMWSQR 118
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 253/560 (45%), Positives = 346/560 (61%), Gaps = 35/560 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ N TPLN K +R+M+SHRDP R++G GN+++KNL +SID+ L + F FG
Sbjct: 67 AIRAIETKNHTPLNGKLMRVMWSHRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGT 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSCK+AT G+SKG GFVQFE+++SA +AI+KLNG ++ DKQ++VG F++K +R +
Sbjct: 127 VLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPS 186
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K+ N++VKNLD T+E L++ F E+G I S + RD G S+ FGFVNFEN DDA
Sbjct: 187 PDAKYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDAR 246
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
A+E +NG + + YVG+AQK++EREQ L+ QFE+ KE + KF+G N+Y+KN+ D +
Sbjct: 247 WAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDV 306
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DE+L+E FS+ GTITS K+M+D G SKG GFV FS+ EEAS+A+ +G M KPLY
Sbjct: 307 TDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLY 366
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPP----RMPMYPPGPSGLGQQFLYGQAPPA 362
VA+AQRKEER+A+LQ Q++Q GPS P P+Y PS + + P A
Sbjct: 367 VAIAQRKEERQAQLQLQYAQRIAGFHGPSTPVIPGGYTPLYYTAPSQVHPRPGMMYQPLA 426
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAP-MPNFFVPVVSQGQQGQR----------PGGRRGAG 411
+ P G G+ P +P+ P MP +SQ Q Q GG +
Sbjct: 427 MRPGWRGNGFAPPSRPVFQPSHLPVMP------ISQRQHKQGRVRMNGHVLPQGGTQSVS 480
Query: 412 PVQQTQQPLPIMPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
VQQ QPL + R G A P GR G+G + P G P
Sbjct: 481 YVQQPAQPLTSLKDPSNQRAGQAKYVPNGRTCD---VSKGSGVLSAAPNSTG---PVSQG 534
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 530
S LS+ LA ASP++Q+ +LGE LYPLV + + D AK+TGMLLEMD +E+L
Sbjct: 535 S-------EVLSSMLAAASPDEQKQILGEQLYPLVRKHKPDLVAKITGMLLEMDNSELLL 587
Query: 531 LLESPEALKAKVAEAMEVLR 550
LLESPE+L AKV EA++VL+
Sbjct: 588 LLESPESLAAKVEEAVQVLK 607
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 161/298 (54%), Gaps = 21/298 (7%)
Query: 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKE 92
+I + T ++++ L + L D FS F + S ++ D S G+S +G+V F + E
Sbjct: 6 TISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPE 65
Query: 93 SAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A AI+ N +N K +V H R+ A + NV+VKNL ES + L++
Sbjct: 66 DAIRAIETKNHTPLNGKLMRVMWSH------RDPDARRNGIGNVYVKNLSESIDNVGLQE 119
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+FGE+GT+ S V DGKSK GFV FE+ D A A+E LNG D++ YVGK KK
Sbjct: 120 LFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKK 179
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
S+R + K+ NLY+KNL I +E L+E FSEFG I S + RD
Sbjct: 180 SDR----------VLPSPDAKY--TNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDE 227
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G S+G GFV F P++A A+ MNG + SK LYV AQ++ ER L+ QF + R
Sbjct: 228 CGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEEKR 285
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAF 282
A+ T+ +LY+ L + D +L + FSEF T+ S +V RD S G S G+V F
Sbjct: 2 AVPSTISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNF 61
Query: 283 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+PE+A RA+ N + K + V + R + R
Sbjct: 62 ISPEDAIRAIETKNHTPLNGKLMRVMWSHRDPDAR 96
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/587 (43%), Positives = 352/587 (59%), Gaps = 64/587 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+FGN
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D +G S+G+GFV FE E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 125 ILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEF 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN + D+ L++IF ++G S VM D G+SK FGFVNFE ++
Sbjct: 184 GAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEE 243
Query: 185 AAK----------------AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 228
A K AV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E
Sbjct: 244 AQKARGSSCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIKQER 303
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 288
V ++QG+NLY+KNL D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA
Sbjct: 304 VSRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEA 362
Query: 289 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGPSVPPRMP 341
++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R + +G PP
Sbjct: 363 TKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATLRALPGPLLGSFQPPPGY 422
Query: 342 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM------PNFFVPVV 395
PP P + Y +P + P + Q RP P+ P + +
Sbjct: 423 FLPPIPQPQTRATFYSPSPVVPVRPATRWSAQPS-----RPPPTPILRAAVPPRRLLTNI 477
Query: 396 SQGQQGQR------PGGRRGAGPVQQTQQPL----PIMPHQMPPRGHAYRYPLG-RNMQD 444
S +Q P +R A QT P +P P Y+Y RN+Q
Sbjct: 478 STMRQASTQVPRVPPQAQRVANIGTQTVSARVPSSPTLPRGTP----QYKYSSSVRNVQP 533
Query: 445 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 504
G M PV V G P V P+TA + LA A P++Q+ ++GE LYPL
Sbjct: 534 M------GHMPPV-VAPQVGEP--AVHVQGQEPLTA--SVLAAAPPQEQKQMIGERLYPL 582
Query: 505 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ + A K+TGMLLE+D +E+L LLESP++L++K+ EA+ VL++
Sbjct: 583 IYAIHPSLAGKITGMLLEIDNSELLLLLESPDSLRSKMEEAVAVLQA 629
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 261/572 (45%), Positives = 358/572 (62%), Gaps = 58/572 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RA++ LN++ + N+ RIM+S RDP++R++G GNIFIKNLD ID+KALHDTF++FGNIL
Sbjct: 101 RAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNIL 160
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+AT+ +G S G+GFV +E E+A+ AI +NGML+NDK+V+VGH + ++ER+
Sbjct: 161 SCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEE 219
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ KF NV+ KN+D TDE +K+F YG ITS V+ RD DGKSK FGFVNFE+ ++A
Sbjct: 220 SRAKFTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQ 279
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ L+ F ++ +V +AQKKSERE+EL+ +E A E + KFQG+NLY+KN+ +S
Sbjct: 280 KAVDELHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESY 339
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L+E F+ FGTITSCK+MR PSG+S+G GFV +S PEEA++A++EMNGKM+ ++PLY
Sbjct: 340 DDERLREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLY 399
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR +L+AQ Q + + + YP G Y Q P P
Sbjct: 400 VALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYP------GPGMYYPQ--PGAFPG 451
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q G +VP R A A M +P+ GQ GQ P AG + Q +P
Sbjct: 452 QPG-----GMVPRPRYAPAGMMPQGMPMAPYGQPGQFP-----AGMMPQGYRPA------ 495
Query: 427 MPPRGHAYRY--------------------PLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
PPRG P G+ + P G G+ AG P
Sbjct: 496 RPPRGAPNAAGGPAPPAGARPPAGVNGAPRPAGQPVPGQPMPRGPGARP-------AGRP 548
Query: 467 RRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ A GQP T + ALA ASPE+Q+ +LGE++YP V + + A K+TGM+LE+ T
Sbjct: 549 QEVA--GQPG--TLTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVT 604
Query: 527 EVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 558
E+LHLLE EAL AKV EA+EVL+ Q +
Sbjct: 605 ELLHLLEEQEALDAKVNEALEVLKEYQQNETT 636
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 190
+++V LD S T+ L +IF G + S V RD +S + +VNF NA D +A+E
Sbjct: 45 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 104
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN +R + +Q+ + A++ T QG N++IKNL ID++
Sbjct: 105 QLNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFIKNLDAGIDNKA 148
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + F+ FG I SCKV + +G S G GFV + T E A A+ +NG ++ K +YV
Sbjct: 149 LHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHH 207
Query: 311 QRKEERRARLQ---AQFSQMRPVAMGPSV 336
++ER+A+++ A+F+ + + P V
Sbjct: 208 IPRKERQAKIEESRAKFTNVYCKNVDPEV 236
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 249/593 (41%), Positives = 332/593 (55%), Gaps = 77/593 (12%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A RALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLD+SID K L+DTFS+
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSA 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER- 122
FGNILSCK+ D +G SKG+GFV FE +E A+ AI+K+NGM +ND +VFVG F +++R
Sbjct: 122 FGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQ 180
Query: 123 -ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
E A +F NV++KNL E DE L+ +FG +G S VM D GKSK FGFV+FE
Sbjct: 181 AELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-------- 233
+DA KAVE +NGK + ++ YVG+AQKK ER+ ELK +F Q MK+ K +
Sbjct: 241 HEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSV 299
Query: 234 ---GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 290
G+NLY+KNL D IDDE+L++ FS FGTITS KV + G SKG GFV FS+PEEA++
Sbjct: 300 RCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATK 358
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGL 350
A+ EMNGK++ +KPLYVA+AQRKEER+A L Q+ Q RM GP+ +
Sbjct: 359 AVTEMNGKIVATKPLYVALAQRKEERQAHLSNQYMQ------------RMASTSAGPNPV 406
Query: 351 GQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 410
F Q P GY P PN QG + A
Sbjct: 407 VSPFQPAQGPS---------GYCMTATPTQSRRAYCAPN---QTTQQGPSARGSAHGTRA 454
Query: 411 GPVQQ---TQQPLPIMPH---QMPPRGHAYRYPLG----------------------RNM 442
P Q T P MP P A R+ R +
Sbjct: 455 HPFQNMCSTIHPSHTMPSFSTSGPTTSQAIRHRTASTSTQMMGPHPAAAAAAAAPATRTI 514
Query: 443 QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI----TALSTALANASPEQQRTLLG 498
+ + G + P +R A +P+ + ++ LA+A P+ Q+ +LG
Sbjct: 515 TQYKYTAGVRNPPQHPNTQPHVSTQRSA-----VPVQGKESLTASMLASAPPQAQKQMLG 569
Query: 499 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
E L+ L++ + A K+TGMLLE+D E+ H+LESPE L KV EA+ VL++
Sbjct: 570 EWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTKVDEAIAVLQA 622
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ V F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
E A+ A+D +N +I K V + +R+ K+ N+FVKNLD S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE ++A +A+E +NG +D + +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+R+ EL + ++ N+YIKNLG+ +DDE+L++LF FG S KVM D
Sbjct: 177 RDRQAELGARAKEFT----------NVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 256/558 (45%), Positives = 356/558 (63%), Gaps = 40/558 (7%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RA++ LN++ + N+ RIM+S RDP++R++G GNIFIKNLD ID+KALHDTF++FGNIL
Sbjct: 103 RAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNIL 162
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
SCK+AT+ +G S G+GFV +E E+A+ AI +NGML+NDK+V+VGH + ++ER+ +
Sbjct: 163 SCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEE 221
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
T+ F NV+ KN+D TD++ +K+F ++G ITS V+ RD DGKSK FGFVNFE+ ++A
Sbjct: 222 TRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQ 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ L+ F ++ +V +AQKKSERE+EL+ +E A E + KFQG+NLY+KN+ +S
Sbjct: 282 KAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESY 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L+E F+ FG ITSCK+MR PSG+S+G GFV +S PEEA++A++EMNGKM+ ++PLY
Sbjct: 342 DDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLY 401
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR +L+AQ Q + + + YP G Y Q P P
Sbjct: 402 VALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYP------GPGMYYPQ--PGAFPG 453
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q G +VP R A A M +P+ GQ GQ P AG + Q +P
Sbjct: 454 QPG-----GMVPRPRYAPAGMMPQGMPMAPYGQPGQFP-----AGMMPQGYRPA------ 497
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSM-----LPVPVDMGAGIPRRDAS--VGQP---M 476
PPRG G PVP G +PR A+ G+P
Sbjct: 498 RPPRGAPNAAGGPAPPAGARPPTGVNGAPRPAGQPVP---GQPMPRGPAARPAGRPEADQ 554
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P + ALA ASPE+Q+ +LGE++YP V + + A K+TGM+LE+ TE+LHLLE E
Sbjct: 555 PGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESE 614
Query: 537 ALKAKVAEAMEVLRSVAQ 554
AL AKV EA+EVL+ Q
Sbjct: 615 ALDAKVNEALEVLKEYQQ 632
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF GT+ S V RD +S + +VNF NA D +A+E
Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A++ T QG N++IKNL ID++ L
Sbjct: 108 LNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFIKNLDAGIDNKAL 151
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV + +G S G GFV + T E A A+ +NG ++ K +YV
Sbjct: 152 HDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHI 210
Query: 312 RKEERRARLQ---AQFSQMRPVAMGPSV 336
++ER+A+++ A F+ + + P V
Sbjct: 211 PRKERQAKIEETRANFTNVYAKNVDPEV 238
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SG 272
EQ G EQ + D +LY+ L S+ + L E+FS GT+ S +V RD +
Sbjct: 28 EQPAVGNGEQ--RNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTR 85
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
S G +V F + RA+ ++N +I ++P + +QR
Sbjct: 86 RSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQR 125
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 245/554 (44%), Positives = 320/554 (57%), Gaps = 58/554 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD LN TP+ K+ RIM+S RDPS+RKSG GN+FIKNLDK IDHKAL+DTFS+F
Sbjct: 62 ADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAF 121
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ TD SKGFGFV +E +ESA AI K+NGM+IN ++VFVG F +ER
Sbjct: 122 GNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQ 181
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ KF NVF KNL E + LK++ +YG IT+ +M D GKSK FGF NFE+A+
Sbjct: 182 -PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEA 240
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A VE NGK F + Y G+AQKK ERE ELK FE K+QG+NLYIKN+ D
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDD 293
Query: 245 SIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SID++KL+E+FS+FGTITS VM+D + SKG GFV ++ P+EA+RA+ EMNG+MI +K
Sbjct: 294 SIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTK 353
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRK+ RRA+L+ Q Q + +PP Y GP PA
Sbjct: 354 PLYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPP---TYGSGPVFF---------TPAP 401
Query: 364 IPPQAGFGYQQQLVPGMR-----PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 418
+ PQ + QQ++P R P G P + ++GQ R GP Q Q
Sbjct: 402 VNPQVVY---QQMMPRPRNWNGQPVGVPQGQYANMNYARGQP-------RQNGPRQNGGQ 451
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 478
P Q PR D+ +PV + + +
Sbjct: 452 P-----RQNGPRP----------------DVSGAQPIPVQQQTTLDVAQTQQAASSAESA 490
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVLHLLESPEA 537
L + + S +QQ LGE LYPL+ + D A K+TGMLL+ + E+ L + +
Sbjct: 491 LNLQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDL 550
Query: 538 LKAKVAEAMEVLRS 551
L K+ EA+EVL S
Sbjct: 551 LADKIREALEVLGS 564
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 238/555 (42%), Positives = 339/555 (61%), Gaps = 51/555 (9%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A+D LN++ + + IRIM+S RDP+ R++G GN+FIKNL +ID+KALHDTFS+FG IL
Sbjct: 116 KAIDELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRIL 175
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD GQSKGFGFV FE+ E+AQ AI+ +NGML+N+ +V+VG + +++R++
Sbjct: 176 SCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEE 235
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ F NV+VKN+D ++E++K++F +GT+TS + +D +GKS+ F FVN+E + A
Sbjct: 236 VIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAV 295
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
K++E+LN + + ++ YVG+AQKKSER +ELK Q+E A E + K QG+NL++KNL DSI
Sbjct: 296 KSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSI 355
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLKE F FGTI+S KVM D SG SKG GFV+FS+PEEASRA++EMN M+ KPLY
Sbjct: 356 DDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLY 415
Query: 307 VAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
VA+AQRK+ RR++L+ Q +++ A +P + + P P F+YGQ P
Sbjct: 416 VALAQRKDVRRSQLEQQIQARNQLRLQQAAAAGGLPGQ---FIPTP------FIYGQQP- 465
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPN--FFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
Q L PG R P+PN F +P QG Q GG+ G Q
Sbjct: 466 ------------QFLPPGAR---GPLPNQPFLIPRPGQGLPPQAAGGQWVGGRPGQPAYG 510
Query: 420 LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP--VPVDMGAGIPRRDASVGQPMP 477
LP Q P R + P + G P P+D P G
Sbjct: 511 LPQEFQQFP---QGGRGGFRGGRGNGPRNQGGRGPAPNAAPID-----PNAQPGAGN--- 559
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLER----DAAAKVTGMLLEMDQTEVLHLLE 533
+ L++ L N EQQ+ LLGE LY + + ++A K+TGM+L+++ E+L LLE
Sbjct: 560 VAQLASILPNVPVEQQKRLLGEELYQRIVSTGKAQDPESAGKITGMMLDLENQEILSLLE 619
Query: 534 SPEALKAKVAEAMEV 548
+ E K +A +
Sbjct: 620 NEELFKQHFDDAFQA 634
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 155/290 (53%), Gaps = 15/290 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ L+ SI+ L + FS G + S ++ D + +S G+ +V + N + + AI
Sbjct: 59 TASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAI 118
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D+LN ++ + + + +R+ + NVF+KNL + ++ L F +G I
Sbjct: 119 DELNYSVVKGQPIRI----MWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRI 174
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK FGFV+FE+ + A A+E +NG ++ E YVG + +R+ +L
Sbjct: 175 LSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKL- 233
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+E + F N+Y+KN+ +E++KELF+ FGT+TS + +D G S+G
Sbjct: 234 -------EEVIKSF--TNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFA 284
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV + E A +++ +N + K LYV AQ+K ER L+ Q+ R
Sbjct: 285 FVNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAAR 334
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
D +E LN K D V + S E + EQA +V + +LY+ L
Sbjct: 10 DKTVNELENLNINK-DQESSTVESSTAPSTSATESTAEGEQASSSSVSETTA-SLYVGEL 67
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
SI++ L E+FS G ++S +V RD + S G +V + ++ +A+ E+N ++
Sbjct: 68 EPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDELNYSVVK 127
Query: 302 SKPLYVAVAQRKEERR 317
+P+ + +QR +R
Sbjct: 128 GQPIRIMWSQRDPAKR 143
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 250/680 (36%), Positives = 352/680 (51%), Gaps = 169/680 (24%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S +AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++F
Sbjct: 116 SDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAF 175
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 176 GNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 235
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F N++VKN+ TD++ + +F +G +TS+ + RD +GKS+ FGFVNF
Sbjct: 236 KFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTH 295
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ AAKAV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E K+QG+NLYIKNL
Sbjct: 296 EAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNL 355
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRD--------------------------------- 269
D +DDEKL++LF++FG ITS KVMRD
Sbjct: 356 DDEVDDEKLRQLFADFGPITSAKVMRDNATESGNEDEGSSDDKENEPKKEEGEEKAEEAK 415
Query: 270 ------------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
P G SKG GFV FS P++A++A+AEMN +M+ KPLYVA+AQ
Sbjct: 416 SEDKEDADKKADKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQ 475
Query: 312 RKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ 367
RK+ R+++L+A + M + P+ M PP GQQ ++ Q + PQ
Sbjct: 476 RKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAAGQQPVFPQGGRGMAFPQ 535
Query: 368 AGF---------------GYQQQL--------------VPGMRPAGAPMPN----FFVPV 394
G GY QQ +PG P GAP P F+
Sbjct: 536 PGMAMPAVQGGRPGQFPGGYPQQGGRGGLPQQMPPVYGIPGQFPPGAPYPQPGNPQFLAA 595
Query: 395 VSQGQQ--------------------------------------GQRPGGRRGAGPVQQT 416
+ Q QQ G +PG RGA P
Sbjct: 596 IQQVQQATMGGGRGGPQGGRGPVPQGMPMPGPGMPGFPPNARQGGNQPGAGRGANP---- 651
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 476
PR + PF G G G P +D + G
Sbjct: 652 ----------NAPR-------------NAPFPQG-----------GRGAPAQDLNSGS-- 675
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
+ A A ++P QQ+ +LGE ++P ++ ++ + A K+TGMLLEMD E+++L+E
Sbjct: 676 -LIQQQLAAAGSNPGQQKQILGEVIFPKIQAIQPELAGKITGMLLEMDNAELVNLIEDES 734
Query: 537 ALKAKVAEAMEVLRSVAQQQ 556
ALKAKV EA+ V + Q
Sbjct: 735 ALKAKVDEALGVYEEYIKAQ 754
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 160/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 122
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 178
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 179 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 238
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + + D++ ++LF+ FG +TS + RD G S+
Sbjct: 239 EMKANF-------------TNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSR 285
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ ++NGK + LYV AQ+K ER L+ + R
Sbjct: 286 GFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 338
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/574 (41%), Positives = 334/574 (58%), Gaps = 56/574 (9%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L +A++ LN+TP+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+
Sbjct: 118 LEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSA 177
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ATD GQSK FGFV +E +E+AQ AI+ +NGML+ND++V+VG + K++RE
Sbjct: 178 FGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRE 237
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ +K + N++VKN+D + T+++ +++F +G ITS + +D +GKSK FGFVNFE
Sbjct: 238 SKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEE 297
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ AAKAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL++KN
Sbjct: 298 HEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKN 357
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L + ID EKL+E F FGTITS KVM D +G SKG GFV FSTPEEA++A+ EMN +M+
Sbjct: 358 LDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVN 417
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YG 357
KPLYVA+AQRK+ RR++L+ Q + M + GL QF+ YG
Sbjct: 418 GKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA---------AAGGLPGQFMPPMFYG 468
Query: 358 QAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAG 411
Q PP G PG MR G P P +Q RPG
Sbjct: 469 QQ--GFFPPN---GRGNAPFPGPNPQMMMRGRGQPFP----------EQWPRPG------ 507
Query: 412 PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS 471
QP+P+ + MPP+ + G+NM+ P R A
Sbjct: 508 ---PNGQPVPV--YGMPPQFQDFN---GQNMRPQQQQQQQQQQQQQQQQQRGYYPNRPA- 558
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTE 527
G +P L+ +ANA E Q+ +LGE LY + + E +AA K+TGM+L ++ E
Sbjct: 559 -GGNVPAKDLAALIANAPLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMMLGLENQE 617
Query: 528 VLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+L LL+ E EA+ + N A
Sbjct: 618 ILDLLDDEELFNNHFEEALNAFEEYKNSEGANAA 651
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 177
+++ E+ I +++V L+ S + L +IF G + S V RD KS + +V
Sbjct: 54 EEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYV 113
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 114 NYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDG----------------NI 157
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+IKNL +ID++ L + FS FG I S KV D G SK GFV + T E A A+ +NG
Sbjct: 158 FIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNG 217
Query: 298 KMIVSKPLYVAVAQRKEERRARLQ 321
++ + +YV K++R ++L+
Sbjct: 218 MLLNDREVYVGKHVSKKDRESKLE 241
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/640 (39%), Positives = 353/640 (55%), Gaps = 111/640 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 116 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 175
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 176 SCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 235
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+ +D++ +++F +YG ITS+ + RD +GKS+ FGFVNF + AA
Sbjct: 236 MKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAA 295
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE L+GK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D +
Sbjct: 296 KAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDV 355
Query: 247 DDEKLKELFSEFGTITSCKVMRD-PSGISKGS---------------------------- 277
DDEKL+++F+EFG ITS KVMRD PS S
Sbjct: 356 DDEKLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKK 415
Query: 278 ---------------GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
GFV FS P++A++A+AEMN +MI KPLYVA+AQRK+ R+++L+A
Sbjct: 416 ADKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEA 475
Query: 323 QFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP 378
+ M + P+ M PP YGQ P I PQ G G +P
Sbjct: 476 SIQARNQLRMQQAAAAAGMPQQYMQPP--------VFYGQQPGFI--PQGGRG-----MP 520
Query: 379 GMRPAGAPMPNFFVPVVSQGQQGQRPG----GRRGAGPVQQTQQPLPIMPHQMPPRGHAY 434
P P + V G+ GQ PG G RGA P QQ + MP Q PP+
Sbjct: 521 ------FPQPGIGMGGVQGGRPGQFPGYPQQGGRGAVP-QQIPPNMYGMPGQFPPQYGQP 573
Query: 435 RYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV---------------------- 472
P G P G G+P +A
Sbjct: 574 GTPQFMAAMQAQQAAMGGRGAP---QGGRGVPPPNAGPGGMPGYPPNNRQGAGRGNGRNN 630
Query: 473 ----------GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
G+ + L LA A P QQ+ +LGE ++P ++ + + A K+TGMLLE
Sbjct: 631 NANGPNQAGRGEGNNASVLQAQLAGAQPAQQKQILGEIIFPKIQAINSELAGKITGMLLE 690
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPAD 562
M+ +E+++L+E ALKAKV EA+ V + Q N A+
Sbjct: 691 MENSELVNLIEDDVALKAKVDEALAVYDEYVKSQGNEGAE 730
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 119 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 174
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + A +A++ +NG ++++ YVG K +R+ +
Sbjct: 175 LSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 234
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ D++ +ELF ++G ITS + RD G S+
Sbjct: 235 EMKANF-------------TNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSR 281
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E++GK + LYV AQ+K ER L+ + R
Sbjct: 282 GFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/566 (43%), Positives = 338/566 (59%), Gaps = 71/566 (12%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ ++ + RIM+S RDPS+R++G GNIFIKNL ID+KALHDTFS+FG IL
Sbjct: 107 RALEQLNYSLIDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFGRIL 166
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCK+ATD G+SK FGFV +E E+A AI+ +NGM +ND++VFVG + K++R +
Sbjct: 167 SCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKFEE 226
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NVFVKN T+ +L +F YG ITS +D +GKSK FGF+NFEN D A
Sbjct: 227 MKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAV 286
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL++KNL DS+
Sbjct: 287 KAVEELNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSL 346
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
E L+E F FGTITS KVM D +G SKG GFV FS PEEA++A+ EMN +M++ KPLY
Sbjct: 347 TSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLY 406
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR++L+ Q Q R +M M +G+ QF+ PP
Sbjct: 407 VALAQRKDVRRSQLEQQI-QAR---------NQMRMQNAAAAGIPGQFM----PPMFYGQ 452
Query: 367 QAGF----GYQQQLVPGMRPAGAPMPNFFVPVVSQGQ----QGQRPGGRRGAGPVQQTQQ 418
Q GF G PG P P +P +GQ QGQ P AGP Q
Sbjct: 453 QPGFFPGNGRNNGPFPG------PNPQMMMP---RGQMPPPQGQWP----RAGP---NGQ 496
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 478
P+P+ + MPP + + P GR + + P + G RRD
Sbjct: 497 PVPV--YGMPPVYNDFNGPNGRQQRGY---------FPNNRNQKGG--RRD--------- 534
Query: 479 TALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLES 534
L+ +A+A P+QQ+ +LGE LYP + + E +AA K+TGM+L++D E+L LLE
Sbjct: 535 --LAAIIASAPPDQQKRILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNQEILALLED 592
Query: 535 PEALKAKVAEAM---EVLRSVAQQQA 557
E +A+ E + +++QA
Sbjct: 593 DELFNNHFEDALTAYEEYKKSSEEQA 618
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 181
E+VA+ + +++V L+ S + L +IF G ++S V RD KS + +VN+
Sbjct: 44 ESVAVTSA--SLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHK 101
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+D +A+E LN D R + +Q+ + G N++IKN
Sbjct: 102 HEDGERALEQLNYSLIDGRPCRIMWSQRDPSLRRNGDG----------------NIFIKN 145
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG +
Sbjct: 146 LHPDIDNKALHDTFSAFGRILSCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLN 205
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ ++V K++R A+ +
Sbjct: 206 DREVFVGKHISKKDRVAKFE 225
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/387 (53%), Positives = 269/387 (69%), Gaps = 13/387 (3%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S AA A+DVLNF +N K IR++YS RDP++R+SG GNIFIKNLDK+ID+KAL DTF+ F
Sbjct: 84 SDAAHAIDVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQF 143
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G I S K+A D +G SKG+GFVQFE E+AQ AID +NGM +NDKQV+VG F R+ +R T
Sbjct: 144 GTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRST 203
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ KFNNV+VKNL E+ +DE L++ F E+G +TS V+M+D +GKSK FGFV FE+ +
Sbjct: 204 QG-EAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEG 262
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AVE L+G D++ W V +AQKK+ERE ELK +FE +E ++K G NLYIKNL +
Sbjct: 263 AASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEE 322
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
DDEKL+ELF+EFGTITSC+VMRD SG S+GS FVAFS+P+EA+RA+ EMNGKM+ +KP
Sbjct: 323 GTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKP 382
Query: 305 LYVAVAQRKEERRA-RLQAQFSQMRPVA----MGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
LYVA+AQRKEE A R A + + A + P P Y + G +F
Sbjct: 383 LYVALAQRKEEPHAGRWHAGYGPVHATAGCSGRADVLRPTAPGYDAAAAATGLRF----- 437
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAP 386
P ++ GY + VP A P
Sbjct: 438 -PTSHAWRSATGY-ARYVPRYADAATP 462
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 173/290 (59%), Gaps = 18/290 (6%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
T ++++ +L+ S+ L++ FSS G ++S ++ D + +S G+ +V F++ A +AI
Sbjct: 31 TSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAI 90
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +IN K + V + +R+ ++ N+F+KNLD++ ++ L F ++GTI
Sbjct: 91 DVLNFQVINGKPIRVLY----SQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTI 146
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
TSA V D G SK +GFV FE A+ A A++ +NG + +D++ YVG Q++++R + +
Sbjct: 147 TSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQGE 206
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+F N+Y+KNL +++ DEKL+E F+E G +TSC +M+D G SKG G
Sbjct: 207 AKFN-------------NVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFG 253
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F +PE A+ A+ ++G K V AQ+K ER A L+A+F R
Sbjct: 254 FVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEAER 303
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 248/636 (38%), Positives = 351/636 (55%), Gaps = 111/636 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+ +D++ +++F +YG ITS+ + RD +GKS+ FGFVNF + AA
Sbjct: 237 MKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAA 296
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE L+GK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D +
Sbjct: 297 KAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDV 356
Query: 247 DDEKLKELFSEFGTITSCKVMRD-PSGISKGS---------------------------- 277
DDEKL+++F+EFG ITS KVMRD PS S
Sbjct: 357 DDEKLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKK 416
Query: 278 ---------------GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
GFV FS P++A++A+AEMN +MI KPLYVA+AQRK+ R+++L+A
Sbjct: 417 ADKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEA 476
Query: 323 QFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP 378
+ M + P+ M PP YGQ P I PQ G G +P
Sbjct: 477 SIQARNQLRMQQAAAAAGMPQQYMQPP--------VFYGQQPGFI--PQGGRG-----MP 521
Query: 379 GMRPAGAPMPNFFVPVVSQGQQGQRPG----GRRGAGPVQQTQQPLPIMPHQMPPRGHAY 434
P P + V G+ GQ PG G RG P QQ + MP Q PP+
Sbjct: 522 ------FPQPGIGMGGVQGGRPGQFPGYPQQGGRGGVP-QQMPPNMYGMPGQFPPQYGQP 574
Query: 435 RYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV---------------------- 472
P G P G G+P +A
Sbjct: 575 GTPQFMAAMQAQQAAMGGRGAP---QGGRGVPPPNAGPGGMPGYPPNNRQGAGRGNGRNN 631
Query: 473 ----------GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
G+ + L + LA A P QQ+ +LGE ++P ++ + + A K+TGMLLE
Sbjct: 632 NANGPNQAGRGEGNNASVLQSQLAGAQPAQQKQILGEIIFPKIQAINSELAGKITGMLLE 691
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 558
M+ +E+++L+E ALKAKV EA+ V + Q N
Sbjct: 692 MENSELVNLIEDDVALKAKVDEALAVYDEYVKSQGN 727
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + A +A++ +NG ++++ YVG K +R+ +
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 235
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ D++ +ELF ++G ITS + RD G S+
Sbjct: 236 EMKANF-------------TNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSR 282
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E++GK + LYV AQ+K ER L+ + R
Sbjct: 283 GFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 335
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 246/607 (40%), Positives = 340/607 (56%), Gaps = 119/607 (19%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GN+FIKNLD+SID+KAL+DTFSSF
Sbjct: 54 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+ D +G SKGFGFV +E+ ESAQ AI+K+NGML+ DK+VFV F + +R
Sbjct: 114 GNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMR 172
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFEN 181
E F N+FVKNL +S + L K F ++G + S V+ + G SKC GF++F+
Sbjct: 173 EFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKE 232
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A AVE ++ K+ + ++ Y G+AQKK+ER ELK ++E+ +E + ++QG+NLY+KN
Sbjct: 233 HDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKN 292
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRD-------------------------------- 269
L DSIDDE L+E F +FG ITS KV+ D
Sbjct: 293 LDDSIDDEGLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSE 352
Query: 270 -------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
G SKG GFV FS+PEEA++A+ EMNG++ KPLYV +AQRKE+R
Sbjct: 353 AAGDAPGPEKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDR 412
Query: 317 RARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQL 376
+A LQ Q+ M+ V+ G + M G + Q F Q P I+P G Q
Sbjct: 413 KAHLQQQY--MQRVSTGIRMQAFM-----GNQVVNQNF---QPPRYILPTMQGQPVQ--- 459
Query: 377 VPGMRPAGAPM---------PNFFVPVVSQGQQGQ---RPGGRRGAGPVQQTQQPLPIMP 424
M P G PM PN +V Q Q P R V+ Q P ++
Sbjct: 460 ---MFPQGTPMVRATPRWAPPNQVRHIVYQSHSQQILASPDAR-----VRNVQIPSEVI- 510
Query: 425 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
QMPP+ +P ++ G P T S+
Sbjct: 511 -QMPPQ----------------------------------MPHQNQPAGDQAPETLTSSM 535
Query: 485 LANASPEQQRTLLGESLYPLVEQL-ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
LANA+P++Q+ +LGE L+PL++ + D A K+TGMLLE+D +E+LH+L++ E LK+KV
Sbjct: 536 LANANPQEQKQMLGERLFPLIQSMAATDLAGKITGMLLEIDNSELLHMLDNRELLKSKVD 595
Query: 544 EAMEVLR 550
EA+ VL+
Sbjct: 596 EAVLVLK 602
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 163/290 (56%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L+D F + G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + + +R+ ++ NVF+KNLD S ++ L F +G I
Sbjct: 62 TMNFDVIKGKPIRIMW----SQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK FGFV++E+ + A +A+E +NG +D++ +V + + +++R +E
Sbjct: 118 SCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMRE--- 173
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSG 278
F A K NL++KNL DS D + L + F +FG + S KV+ D +G+SK G
Sbjct: 174 -FGDAAKHFT------NLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHG 226
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F++F ++A A+ M+ K I K LY AQ+K ER + L+A++ +++
Sbjct: 227 FISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIK 276
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/571 (42%), Positives = 337/571 (59%), Gaps = 63/571 (11%)
Query: 5 SSAARALDVLNFTPLNNKSI---RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
S RAL+ LN++ + K RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF
Sbjct: 162 SDGERALEQLNYSLIKGKPWHVSRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTF 221
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
+FGN+LSCK+A D G SKG+GFV +E E+A AI ++GML+NDK+V+VG + ++E
Sbjct: 222 VAFGNVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKE 281
Query: 122 RETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 179
R++ I+ +F N++VKNLD +++ +K+F YGTITSAV+ D DGKSK FGFVN+
Sbjct: 282 RQSKLDEIRAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNY 341
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
E + A KAV+ALN K + ++ +VG+AQK++ER++EL+ F+ A E + K QG+NLYI
Sbjct: 342 ETHEMAQKAVDALNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYI 401
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KN+ D +DDEKL+ F +GTITS K+MRD G+SKG GFV FSTP+EA+RA+AEMN KM
Sbjct: 402 KNIDDDMDDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKM 461
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
I SKPLYV++AQR++ RR +L++Q SQ + M + + Y GP +Y A
Sbjct: 462 IGSKPLYVSLAQRRDVRRQQLESQISQRNQIRMQQAAAAGLTGYINGP-------MYYGA 514
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
P P Q G GY AG P PG + P
Sbjct: 515 PG--FPAQGGRGY----------AGYP-----------------PGMTGPGRGGYRGPMP 545
Query: 420 LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPIT 479
+P +P G+A + P M P+ G P G PR A G P
Sbjct: 546 VPPIP------GYAGQAPQPYGMN--PYAPRPGPGGPRGGAPTNGTPRSGAGRGLPQAAP 597
Query: 480 ALS--------------TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
A + + + +A E Q+ L+GE +Y V D A K+TGMLLEM+
Sbjct: 598 ATTAAPKTATKPTELDISHITSAPAEGQKQLIGEIIYMRVYGPYPDLAGKITGMLLEMEN 657
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 556
+E++ LL+ +L K+ EA+ VL A ++
Sbjct: 658 SELIRLLKDTPSLDMKINEALAVLHEYAPKE 688
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 17/199 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ N+ D +A+E
Sbjct: 111 SLYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALEQ 170
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + W+V + + Q + A+++T QG N++IKNL + ID++ L
Sbjct: 171 LNYSLIKGKPWHVSRI---------MWSQRDPALRKTG---QG-NIFIKNLDEGIDNKAL 217
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F FG + SCKV D G SKG GFV + T E A A+ ++G ++ K +YV
Sbjct: 218 HDTFVAFGNVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHI 277
Query: 312 RKEERRARL---QAQFSQM 327
++ER+++L +AQF+ +
Sbjct: 278 PRKERQSKLDEIRAQFTNI 296
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/546 (43%), Positives = 329/546 (60%), Gaps = 69/546 (12%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L +A++ LN++ ++ + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTFS+
Sbjct: 101 LEDGEKAIEELNYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSA 160
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCK+ATD G SK FGFV +E E+A+ AI+ +NGML+ND++V+VG + K++RE
Sbjct: 161 FGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRE 220
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ +K F NV+VKN+D ++E+++K+F YG ITS + +D +GKSK FGFVNFE+
Sbjct: 221 SKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFES 280
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE LN K + ++ YVG+AQKK ER +ELK Q+E A E + K+QG+NL++KN
Sbjct: 281 HEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKN 340
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSID KL+E F FGTITS +VM D G SKG GFV FS+PEEA++A+ EMN +M
Sbjct: 341 LDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFH 400
Query: 302 SKPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLY 356
KPLYVA+AQRK+ RR++L+ Q +M+ A +P + PP Y
Sbjct: 401 GKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQ--FIPP--------MFY 450
Query: 357 GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ----QGQRPGGRRGAGP 412
GQ P PP G P P P VP +GQ QGQ P AGP
Sbjct: 451 GQQ-PGFFPPNG---------RGSAPFPGPNPQMMVP---RGQIPPPQGQWP----RAGP 493
Query: 413 VQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS 471
QP+P+ + +PP G GR + + P R
Sbjct: 494 ---NGQPVPV--YGIPPVYGDFAAANGGRQQRGY-------------------YPNRQNQ 529
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER----DAAAKVTGMLLEMDQTE 527
G+P L+ LA+A +QQ+ +LGE LYP + R +AA K+TGM+L++D E
Sbjct: 530 KGRPQ--KDLAALLASAPVDQQKRILGEELYPKIVSTGRAQEPEAAGKITGMMLDLDNQE 587
Query: 528 VLHLLE 533
+L LLE
Sbjct: 588 ILALLE 593
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ S + L +IF G ++S V RD KS + +VNF +D KA+E
Sbjct: 51 SLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEE 110
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN D R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 111 LNYSLIDGRPCRIMWSQRDPSLRRNGEG----------------NIFIKNLHPAIDNKAL 154
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + +YV
Sbjct: 155 HDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHV 214
Query: 312 RKEERRARLQ 321
K++R ++ +
Sbjct: 215 SKKDRESKFE 224
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 356/616 (57%), Gaps = 81/616 (13%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL+VLN+ L + IRIM+S RDPS+RKSG GNIFIKNLDKSI+ K L+DTFS FG
Sbjct: 67 AEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKI D +GQSKG+GFV FE +E A+ AI+K+N M+I D+ V+VG F+ K ER++ A
Sbjct: 127 ILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQA 186
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNN+++KN T +E LK++F E+G I SA VM+D +GKSK FGFV F + D A
Sbjct: 187 RKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAE 246
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-GLNLYIKNLGDS 245
AV+ ++GK+ + R Y +AQ+K ER++ELK + E+ E + +NLY+KNL D+
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDN 306
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDD++L+E FS G+ITS KVM+D + SKG GFV F+ PE+A+RA+ +MNG +I SKPL
Sbjct: 307 IDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPL 366
Query: 306 YVAVAQRKEERRARL----QAQFSQMR-PVA-MGPSVPPR---MPMYPPG---------P 347
YVA+AQRKE+RRA+L Q + +Q R PVA M P+VP +PP P
Sbjct: 367 YVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHP 426
Query: 348 SG--LGQQFLYGQAP--PAII------PPQAGF----------------GYQQQLVPG-- 379
SG L Q + +A PA I PP AG+ + Q PG
Sbjct: 427 SGAVLSSQPRWNRAAGIPAQIGGLPNRPPVAGYYPSAPNPAAITANQMASFAQFRTPGVN 486
Query: 380 --MRPAG-APMPNFFVPVV-----SQGQQGQRPGGRRGAGPVQ--------QTQQPLPIM 423
M P G + +P+ + + QQ Q+ GR+G Q Q+P
Sbjct: 487 RPMVPNGMSSIPSTHLQTAAVFNQTANQQRQQASGRQGVVVPQVLGATAGGLNQRPTAAS 546
Query: 424 PHQMPPRGH-AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP--MPITA 480
PP + A R + + G ++ ++ R+ S QP +P +
Sbjct: 547 VVAGPPSVNPAMRQQVASQVPRAVMHSGMSNITSTATNVRFHQTARNVS-AQPTLVPAGS 605
Query: 481 LST--------------ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 526
+ST ALA S E Q+ LGE LYP ++ + + A K+TGMLL +D
Sbjct: 606 MSTLLQPLGDQGQLTISALAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNA 665
Query: 527 EVLHLLESPEALKAKV 542
EV++LLES E L+AKV
Sbjct: 666 EVINLLESEELLRAKV 681
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 162/290 (55%), Gaps = 21/290 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + AL FS G +LS ++ D + S G+G+V FE+ + A+ A++
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
LN + +G +R +R+ K+ N+F+KNLD+S ++L F +G I
Sbjct: 74 LN------YESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRI 127
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S ++ D +G+SK +GFV+FE + A +A+E +N DR YVGK K+ER+ + +
Sbjct: 128 LSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
K + NLYIKN D+EKLKE+F+EFG I S VM+D G SKG G
Sbjct: 188 ------------KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFG 235
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F P+ A A+ M+GK I + LY A AQRKEER+ L+ + + R
Sbjct: 236 FVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQR 285
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 233 QGL---NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
QGL +LY+ +L + D L+ FSE G + S +V RD + S G G+V F P+ A
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHA 67
Query: 289 SRALAEMNGKMIVSKPLYVAVAQR 312
+AL +N + ++ +P+ + +QR
Sbjct: 68 EQALEVLNYESLMGRPIRIMWSQR 91
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 253/582 (43%), Positives = 343/582 (58%), Gaps = 50/582 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK ID+K+++DTFS F
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF--LRKQER 122
GNILSCK+A D G SKG+GFV FE +E+AQNAI K+NGML+ K+VFVG F ++ R
Sbjct: 144 GNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E +F NV+VKN + E L+K+F ++G ITS VM +GKSK FGFV F N
Sbjct: 204 ELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANP 262
Query: 183 DDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
++A AV+AL+ + D + +V +AQKKSER ELK + EQ E + K+QG+NLY+K
Sbjct: 263 EEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVK 322
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +++DD+ LK+ F +G ITS KVM D +G SKG GFV F PEEA+ A+ EMN KM+
Sbjct: 323 NLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP MY P G G Y A
Sbjct: 383 CSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPG-AAMYNPTQPGPG----YYVA 437
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
P + Q F QQ+V RP G PV +Q Q PG + Q QQ
Sbjct: 438 NP--MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQG 492
Query: 420 LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML-----------------------P 456
P + PP+ + G MQ P G P
Sbjct: 493 GP----RGPPQQYNQVAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPP 548
Query: 457 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL---ERDAA 513
P P + +G P+T S LA A+P++Q+ LLGE +Y L+E+L +D A
Sbjct: 549 QPYQAYQQRP-QGIVIGGQEPLT--SAMLAAAAPQEQKQLLGERIYALIEKLYPGHKD-A 604
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
K+TGM+LE+D +E++ +L+ E ++KV EA VL S +Q
Sbjct: 605 GKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ 646
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 163/294 (55%), Gaps = 18/294 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L + FS+ G +LS ++ D + + S G+ +V F+ A+ A+D
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ K + + +R+ ++ N+F+KNLD+ ++ + F +G I S
Sbjct: 93 MNFEALHGKPMRI----MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D DG SK +GFV+FE + A A++ +NG ++ +VGK Q +++R +EL
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--- 205
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
ET +F N+Y+KN GD + E L++LF++FG ITSC+VM G SKG GFV
Sbjct: 206 -----GETAKQF--TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFV 257
Query: 281 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
AF+ PEEA A+ ++ I L+V AQ+K ER A L+ + Q + M
Sbjct: 258 AFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTP 285
+T + +LY+ +L +++ L E FS G + S +V RD + +S G +V F P
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 286 EEASRALAEMNGKMIVSKPLYVAVAQR 312
+A RA+ MN + + KP+ + +QR
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQR 110
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/546 (43%), Positives = 330/546 (60%), Gaps = 68/546 (12%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L +A+D LN++ ++ + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTFS+
Sbjct: 101 LEDGEKAIDDLNYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSA 160
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCK+ATD G SK FGFV +E E+A+ AI+ +NGML+ND++V+VG + K++RE
Sbjct: 161 FGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRE 220
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ +K F NV+VKN+D ++E+++ +F YG ITS + +D +GKSK FGFVNFE+
Sbjct: 221 SKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFES 280
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE LN K + + YVG+AQKK ER +ELK Q+E A E + K+QG+NL++KN
Sbjct: 281 HEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKN 340
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSID KL+E F FGTITS +VM D G SKG GFV FS+PEEA++A+ EMN +M
Sbjct: 341 LDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFH 400
Query: 302 SKPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLY 356
KPLYVA+AQRK+ RR++L+ Q +M+ A +P + PP Y
Sbjct: 401 GKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQF--IPP--------MFY 450
Query: 357 GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ----QGQRPGGRRGAGP 412
GQ P PP G P P P VP +GQ QGQ P AGP
Sbjct: 451 GQQP-GFFPPNG---------RGSAPFPGPNPQMMVP---RGQIPPPQGQWPR----AGP 493
Query: 413 VQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS 471
QP+P+ + +PP G GR + + + G G P++D
Sbjct: 494 ---NGQPVPV--YGIPPVYGDFAAANGGRQQRGYYPNRGQNQ---------KGRPQKD-- 537
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER----DAAAKVTGMLLEMDQTE 527
L+ LA+A +QQ+ +LGE LYP + + R +AA K+TGM+L++D E
Sbjct: 538 ---------LAALLASAPVDQQKRILGEELYPKIVSMGRAQEPEAAGKITGMMLDLDNQE 588
Query: 528 VLHLLE 533
+L LLE
Sbjct: 589 ILALLE 594
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ S + L +IF G ++S V RD KS + +VNF +D KA++
Sbjct: 51 SLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDD 110
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN D R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 111 LNYSLIDGRPCRIMWSQRDPSLRRNGEG----------------NIFIKNLHPAIDNKAL 154
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + +YV
Sbjct: 155 HDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGKHV 214
Query: 312 RKEERRARLQ 321
K++R ++ +
Sbjct: 215 SKKDRESKFE 224
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 257/649 (39%), Positives = 351/649 (54%), Gaps = 143/649 (22%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 107 RALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFGNIL 166
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A NAI +NGML+N+K+V+VGH + K+ER++
Sbjct: 167 SCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKKERQSKFDE 226
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKN+D +D++ + +F +G ITSA + RDGD G S+ FGFVNF + + A
Sbjct: 227 MKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAA 286
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AV+AL+ + + +VG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D
Sbjct: 287 AAAVDALHETELKGQALFVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYVKNLDDE 346
Query: 246 IDDEKLKELFSEFGTITSCKVMRDP-------------------------SGISKGSGFV 280
IDDE+L++ FS +GTITS KVMRD G SKG GFV
Sbjct: 347 IDDERLRQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFV 406
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA---QFSQMR--------- 328
FS P+EAS+A+AEMN +M+ KPLYVA+AQRK+ R+++L+A Q +Q+R
Sbjct: 407 CFSNPDEASKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQQRNQIRMQQAAAAAG 466
Query: 329 ---------PVAMGPSVP-----------------PRMPMYPPGPSGL---GQQFLYGQA 359
P+ P P R+P +PP +G+ G G
Sbjct: 467 MPPQPYLSAPLYYQPGAPGVQPPFLAGPGGPGVPPNRLP-FPPQQAGMMISGAGRASGNW 525
Query: 360 PPAIIPPQAGF-GYQQQLVP--------------------------GMRPA--GAPMPNF 390
PP+ P G Q Q P M PA GAP
Sbjct: 526 PPSANPSGGNRNGTQGQPAPIYGMTGQGGPGGQFGYAQAFNQAQLAAMNPAARGAP---- 581
Query: 391 FVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG 450
Q G PG +G V Q QM GH R PLGR
Sbjct: 582 --------QLGLNPGRGLSSGGVNQ----------QM---GHQQRGPLGRG--------- 611
Query: 451 AGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER 510
V G G AS G P + L+ N P+QQ+ +LGE+LYP + +
Sbjct: 612 ------VAPSQGRGYHSDQASQGAPPQLANLN----NLPPQQQKQVLGEALYPRIHAINP 661
Query: 511 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN 559
A K+TGMLLEMD E+L+L++ AL+ KV EA+ V + +A +
Sbjct: 662 QLAGKITGMLLEMDNNELLNLIKDDSALRNKVDEALSVYDEYVKSKATD 710
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL E
Sbjct: 52 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEE 111
Query: 295 MNGKMIVSKPLYVAVAQR 312
+N +I +P + +QR
Sbjct: 112 LNYTLIKGRPCRIMWSQR 129
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 244/598 (40%), Positives = 340/598 (56%), Gaps = 88/598 (14%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+FGN
Sbjct: 77 AERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGN 136
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+ D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 137 ILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL 195
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE ++
Sbjct: 196 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 255
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL D
Sbjct: 256 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDD 315
Query: 245 SIDDEKLKELFSEFGTITSCKVM---------RDPSGISKGSGFVAFSTPEEASRALAEM 295
SIDD+KL++ FS +G ITS K + DP G S ++ EEA++A+ EM
Sbjct: 316 SIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALS-GLKEEATKAVTEM 374
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPS 348
NG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P
Sbjct: 375 NGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQ 434
Query: 349 GLGQQFLYGQAPPAIIPPQAGFGYQQQ---------------------LVPGMRPAGAPM 387
Q YG P + P Q + Q + +R A +
Sbjct: 435 PPAQAAYYGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVMPRRPPAHISSVRQASTQV 492
Query: 388 PNFFVP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA-YRYPLGRNM 442
P VP V + G Q PGG P + P++P++ H+ YR
Sbjct: 493 PR-MVPHTQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSSAAHSTYRVQ----- 540
Query: 443 QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLY 502
+ IP ++ P+TA + LA A +Q+ ++GE LY
Sbjct: 541 -----------------EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLY 574
Query: 503 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 560
PL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+ A Q P
Sbjct: 575 PLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ--AHQAVEQP 630
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD------PSGISKGSGFVAFSTP---- 285
+LY+ +L + + L E FS G I S +V RD P+ S G ++ F P
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQPADGE 71
Query: 286 ---EEASRALAEMNGKMIVSKPLYVAVAQR 312
+ A RAL MN +M+ +P+ + +QR
Sbjct: 72 EQAQRAERALDTMNFEMLKGQPIRIMWSQR 101
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 239/553 (43%), Positives = 333/553 (60%), Gaps = 58/553 (10%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ +A++ LN++P+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+
Sbjct: 103 MEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFST 162
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE
Sbjct: 163 FGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE 222
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ IK F N++VKN+D ++EDLKK+F YG ITS + +D +GKSK FGFVN+E
Sbjct: 223 SKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEG 282
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL+IKN
Sbjct: 283 HEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKN 342
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+ID EKL+E F FGTITS +VM D +G SKG GFV FS+PEEA++A+ EMN +M
Sbjct: 343 LDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFF 402
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
KPLYVA+AQRK+ RR++L+ Q + M + G P
Sbjct: 403 GKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAT------------------GGIPG 444
Query: 362 AIIPPQAGFGYQQQLVP----GMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 417
IPP F QQ P G P P P ++ +GQ P GP
Sbjct: 445 QFIPPM--FYGQQGFFPPNGRGNAPFPGPNPQM---IMRRGQPFGGPEQWPRPGP---NG 496
Query: 418 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
QP+P+ + +PP+ AY G+N++ P R+ + G+
Sbjct: 497 QPVPV--YGIPPQ--AYSDFNGQNIRQ----------------QRGYYPNRNQNKGRQQ- 535
Query: 478 ITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLE 533
L+ +A+A P+QQ+ +LGE LYP + + E +AA K+TGM+L++D E+L LLE
Sbjct: 536 -RDLAAIIASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLE 594
Query: 534 SPEALKAKVAEAM 546
E +A+
Sbjct: 595 DDELFTNHFEDAL 607
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ S + L +IF G ++S V RD KS + +VN+ +D KA+E
Sbjct: 53 SLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEE 112
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 113 LNYSPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKNLHPAIDNKAL 156
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 157 HDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHI 216
Query: 312 RKEERRARLQ 321
K++R ++ +
Sbjct: 217 SKKDRESKFE 226
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 251/581 (43%), Positives = 340/581 (58%), Gaps = 48/581 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK ID+K+++DTFS F
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF--LRKQER 122
GNILSCK+A D G SKG+GFV FE +E+AQNAI K+NGML+ K+VFVG F ++ R
Sbjct: 144 GNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E +F NV+VKN + E L+K+F ++G ITS VM +GKSK FGFV F N
Sbjct: 204 ELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTV-EGKSKGFGFVAFANP 262
Query: 183 DDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
++A AV+AL+ + D + +V +AQKKSER ELK + EQ E + K+QG+NLY+K
Sbjct: 263 EEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVK 322
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +++DD+ LK+ F +G ITS KVM D +G SKG GFV F PEEA+ A+ EMN KM+
Sbjct: 323 NLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
SKPLYVA+ QRKE+RRA+L +Q+ Q + + M +VP MY P G G Y A
Sbjct: 383 CSKPLYVAIGQRKEDRRAQLASQYMQRVASMRMHGNVPG-AAMYNPTQPGPG----YYVA 437
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
P + Q F QQ+V RP G PV +Q Q PG + Q QQ
Sbjct: 438 NP--MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQG 492
Query: 420 LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML-----------------------P 456
P + PP+ + G MQ P G P
Sbjct: 493 GP----RGPPQQYNQVAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPP 548
Query: 457 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE--RDAAA 514
P P + +G P+T S LA A+P++Q+ LLGE +Y L+E+L A
Sbjct: 549 QPYQAYQQRP-QGIVIGGQEPLT--SAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAG 605
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
K+TGM+LE+D +E++ +L+ E ++KV EA VL S +Q
Sbjct: 606 KITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ 646
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 163/294 (55%), Gaps = 18/294 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L + FS+ G +LS ++ D + + S G+ +V F+ A+ A+D
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ K + + +R+ ++ N+F+KNLD+ ++ + F +G I S
Sbjct: 93 MNFEALHGKPMRI----MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D DG SK +GFV+FE + A A++ +NG ++ +VGK Q +++R +EL
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--- 205
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
ET +F N+Y+KN GD + E L+++F++FG ITSC+VM G SKG GFV
Sbjct: 206 -----GETAKQF--TNVYVKNFGDHYNKETLEKVFAKFGNITSCEVM-TVEGKSKGFGFV 257
Query: 281 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
AF+ PEEA A+ ++ I L+V AQ+K ER A L+ + Q + M
Sbjct: 258 AFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTP 285
+T + +LY+ +L +++ L E FS G + S +V RD + +S G +V F P
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 286 EEASRALAEMNGKMIVSKPLYVAVAQR 312
+A RA+ MN + + KP+ + +QR
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQR 110
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/337 (55%), Positives = 257/337 (76%), Gaps = 3/337 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + N+ RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF++FGN+L
Sbjct: 102 RALEQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVL 161
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G SKG+GFV +E E+A+NAI +NGML+NDK+V+VGH + ++ER++
Sbjct: 162 SCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDE 221
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K +F N+++KN+D TDE+ + +F E G +TS+V+ RD +G+S+ FGFVN+E ++A
Sbjct: 222 MKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQ 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K F R+ +V +AQKK+ERE+EL+ EQA E + K+QGLNLY+KNL D +
Sbjct: 282 KAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDV 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ F FGTITS KVMRD G+SKG GFV +S+PEEAS+A+AEMN KMI SKPLY
Sbjct: 342 DDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLY 401
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
V+ AQR+E RR +L++Q +Q R M + MP Y
Sbjct: 402 VSHAQRREVRRQQLESQIAQ-RNQIMHQAAAGGMPGY 437
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 47 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 106
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 107 LNYSLIKNRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 150
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHI 210
Query: 312 RKEERRAR---LQAQFSQMRPVAMGPSV 336
++ER+++ ++AQF+ + + P V
Sbjct: 211 SRKERQSKIDEMKAQFTNLYIKNIDPEV 238
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 252/578 (43%), Positives = 341/578 (58%), Gaps = 50/578 (8%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK ID+K+++DTFS FGNIL
Sbjct: 25 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNIL 84
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF--LRKQERETVA 126
SCK+A D G SKG+GFV FE +E+AQNAI K+NGML+ K+VFVG F ++ RE
Sbjct: 85 SCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGE 144
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+F NV+VKN + E L+K+F ++G ITS VM +GKSK FGFV F N ++A
Sbjct: 145 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAE 203
Query: 187 KAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AV+AL+ + D + +V +AQKKSER ELK + EQ E + K+QG+NLY+KNL +
Sbjct: 204 TAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDE 263
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
++DD+ LK+ F +G ITS KVM D +G SKG GFV F PEEA+ A+ EMN KM+ SKP
Sbjct: 264 TVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKP 323
Query: 305 LYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
LYVA+AQRKE+RRA+L +Q+ Q + + M +VP MY P G G Y A P
Sbjct: 324 LYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPG-AAMYNPTQPGPG----YYVANP-- 376
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
+ Q F QQ+V RP G PV +Q Q PG + Q QQ P
Sbjct: 377 MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGGP-- 431
Query: 424 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML-----------------------PVPVD 460
+ PP+ + G MQ P G P P
Sbjct: 432 --RGPPQQYNQVAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQ 489
Query: 461 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL---ERDAAAKVT 517
P + +G P+T S LA A+P++Q+ LLGE +Y L+E+L +D A K+T
Sbjct: 490 AYQQRP-QGIVIGGQEPLT--SAMLAAAAPQEQKQLLGERIYALIEKLYPGHKD-AGKIT 545
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
GM+LE+D +E++ +L+ E ++KV EA VL S +Q
Sbjct: 546 GMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ 583
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 248/656 (37%), Positives = 354/656 (53%), Gaps = 115/656 (17%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S +AL+ LN+T +N + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++F
Sbjct: 113 SDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAF 172
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 173 GNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 232
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F NV+VKN++ +D++ + +F +YG +TS+ + RD +GKS+ FGFVNF
Sbjct: 233 KFEEMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTH 292
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A++AVE LNGK F ++ YVG+AQKK ERE+EL+ +E A +E +K+QG+NLYIKNL
Sbjct: 293 EAASQAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIKNL 352
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPS------------------------------- 271
D +DDEKL+ +FSEFG ITS KVMRD
Sbjct: 353 SDDVDDEKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEETPAPEAEVKKEDSEADADS 412
Query: 272 ----------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
G SKG GFV FS PE+A++A+A+MN +MI +KPLYVA+AQRK+
Sbjct: 413 QEAADKKDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDV 472
Query: 316 RRARLQAQFS-----QMRPVAMGPSVPPRM---PMYPPG---------------PSGLGQ 352
R+ +L+ +M+ A +P + P+Y PG P +G
Sbjct: 473 RKNQLEQSIQARNQMRMQSAAAQAGMPNQFMQQPVYFPGQQPGFLPQGGRGMPFPPNMGM 532
Query: 353 QFLYGQAP---PAIIPPQAGFGYQQQLVPGMR-----------PAGAPMPNFFVPVVSQG 398
+ G P PA P Q G G QQL P M PA A P F + Q
Sbjct: 533 PNIQGGRPGQYPAGFPQQGGRGIPQQLPPNMYGVPGQFPPGGFPAQANNPQFMA-AMQQV 591
Query: 399 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFD---------- 448
QQ + + P Q P G P+G +P +
Sbjct: 592 QQAS----------MGGGRGQGGRGPMQGMPAG-----PMGPGAPGYPPNRQQPGQAGGR 636
Query: 449 -MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANAS-PEQQRTLLGESLYPLVE 506
G P G G P + P ++A+ L NA+ QQ+ ++GE ++P +
Sbjct: 637 GGRNGQQGNFPPQGGRGAPGAGENT-PPQGLSAIQLQLNNATDARQQKQIIGELIFPKIA 695
Query: 507 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPAD 562
+ + A K+TGMLLEM+ +E++ L+E A+K KV EA+ V + Q D
Sbjct: 696 AQQPELAGKITGMLLEMENSELITLIEDDNAMKLKVDEALGVYEEYVKNQGTEEDD 751
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 157/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ L+ + L + FS G + S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +IN + + +R+ K NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTVINGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+ +
Sbjct: 176 LSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 235
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ D++ ++LF+++G +TS + RD G S+
Sbjct: 236 EMKANF-------------TNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSR 282
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E AS+A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 283 GFGFVNFTTHEAASQAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 335
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 257/670 (38%), Positives = 363/670 (54%), Gaps = 131/670 (19%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + N+ RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF++FGNIL
Sbjct: 115 KALEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNIL 174
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+AQ AI +NGML+N+K+V+VGH + K++R++
Sbjct: 175 SCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 234
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K + N+++KNL TD++ +K+F +YG +TS+ + RD + GKS+ FGF+NF + A
Sbjct: 235 MKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESA 294
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AKAVE LN ++ +E YVG+AQKK ERE+EL+ +E A +E K+ G+NLYIKNL D
Sbjct: 295 AKAVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDE 354
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPS---------------------------------- 271
+DDEKL+ELF+ +G ITS KVMR+ +
Sbjct: 355 VDDEKLRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEG 414
Query: 272 ----------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
G SKG GFV FS P++A++A+ EMN +M+ KPLYVA+AQ+KE
Sbjct: 415 EADASGEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEV 474
Query: 316 RRARLQAQFS-----QMRPVAMGPSVP-----PRMPMYPPGP-------SGLGQQFLYGQ 358
R+++L+A +M+ A +P P++ YPPG G G F G
Sbjct: 475 RKSQLEASIQARNTLRMQQAAAVAGLPQTYMQPQV-YYPPGQQQAFLPQGGRGMAFPQGG 533
Query: 359 --------------APPAIIPPQAGFGYQ-QQL------VPGMRPAGAPM-PNF--FVPV 394
AP PQ G G QQL +PG P G P PN ++
Sbjct: 534 LGIPGVQGGRPGQFAPGGFTGPQGGRGLPPQQLPPNVYGLPGQFPPGVPFGPNNAQYLAA 593
Query: 395 VSQGQQ------------------GQRPGG---RRGAGPVQQTQQPLPIMPHQMPPRGHA 433
+ Q QQ G P G +GAGP L P G
Sbjct: 594 MQQVQQTVGRGGAPAGGRGPIPALGSHPAGINGLQGAGP------GLAGFPPTRQNGGGR 647
Query: 434 YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 493
G P AG + A +P + Q I A TA N + +QQ
Sbjct: 648 GAGRGGAQGFAGP---QAGRGVQGQASGSAAVPE----LNQATLIQAQLTA-TNGNVQQQ 699
Query: 494 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 553
+ +LGE+++P ++ + + A K+TGMLLEMD E++HL+E ALKAKV EA+ V +
Sbjct: 700 KQILGEAIFPKIQNFQPELAGKITGMLLEMDNQELVHLIEDESALKAKVDEALGVYQDYV 759
Query: 554 QQQANNPADQ 563
+ Q N PA++
Sbjct: 760 KAQ-NVPAEE 768
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 162/291 (55%), Gaps = 16/291 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD+S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 58 SASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 117
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI ++ + +R+ KT N+F+KNLD + ++ L F +G I
Sbjct: 118 EELNYTLIKNRPCRI----MWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNI 173
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V +D G SK +GFV++E + A +A++ +NG ++++ YVG K +R+
Sbjct: 174 LSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQS--- 230
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGS 277
+FE+ MK N+YIKNL + D++ ++LF ++G +TS + RD +G S+G
Sbjct: 231 -KFEE-MKANY-----TNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGF 283
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GF+ F+T E A++A+ E+N + I + LYV AQ+K ER L+ + R
Sbjct: 284 GFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAAR 334
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/326 (56%), Positives = 252/326 (77%), Gaps = 2/326 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD LN++ + N++ RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF++FGN+L
Sbjct: 103 RALDQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVL 162
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G SKG+GFV +E E+A+NAI +NGML+NDK+VFVGH + ++ER++
Sbjct: 163 SCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDE 222
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K ++ N++VKNLD E +++FG++G ITSA + +D +GKS+ FGFVNFE+ + AA
Sbjct: 223 MKAQYTNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAA 282
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE L+ + + R+ YV +AQKKSERE EL+ +E A +E + K+QG+NLYIKNL D I
Sbjct: 283 AAVETLHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDI 342
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ F FGTITSCKVMRD SKG GFV FS+P+EA++A++EMN KMI SKPLY
Sbjct: 343 DDEKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLY 402
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAM 332
V++AQR+E RR +L+ Q +Q + M
Sbjct: 403 VSLAQRREVRRQQLETQIAQRNQIRM 428
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 154/291 (52%), Gaps = 21/291 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ LD S+ L + F+ G + S ++ D + +S G+ +V + N + A+D+
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN LI ++ + +R+ KT N+F+KNLDE ++ L F +G + S
Sbjct: 108 LNYSLIKNRACRI----MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLS 163
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---EL 217
V D G SK +GFV++E A+ A A++++NG +D++ +VG + ER+ E+
Sbjct: 164 CKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEM 223
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
K Q+ N+Y+KNL + E +ELF +FG ITS + +D G S+G
Sbjct: 224 KAQY-------------TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGF 270
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV F + E+A+ A+ ++ I + LYVA AQ+K ER L+ + +
Sbjct: 271 GFVNFESHEQAAAAVETLHDTEINGRKLYVARAQKKSEREDELRKSYENAK 321
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/397 (50%), Positives = 282/397 (71%), Gaps = 16/397 (4%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
F + RAL+ LN++ + ++ RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF
Sbjct: 101 FNAADGERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTF 160
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
++FGN+LSCK+ATD G+SKG+GFV +E E+A++AI +NGML+NDK+V+VGH + K++
Sbjct: 161 AAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKD 220
Query: 122 RETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 179
R+ K +F NV+VKN+D D++ +++F +G +TSAV+ RD +G+S+ FGFVNF
Sbjct: 221 RQAKLDEQKKQFTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNF 280
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
E ++A KAV+ L+ F R+ +V +AQKKSERE+EL+ +EQA E + K+QG+NLYI
Sbjct: 281 ETHEEAQKAVDTLHDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYI 340
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL D +DDEKL++ F FG ITS KVMR G SKG GFV FS+P+EA++A+AEMN KM
Sbjct: 341 KNLEDDVDDEKLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKM 400
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP---MYPP-------GPSG 349
+ SKPLYV++AQR+E RR +L++Q +Q + M + MP M PP P
Sbjct: 401 MGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGMPAGYMNPPMYYPGPGFPPP 460
Query: 350 LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 386
G+ F YGQ P ++PP+ + QQ VPGM P AP
Sbjct: 461 AGRGFGYGQ--PGMMPPRPRYAPGQQ-VPGM-PVPAP 493
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + ++ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 53 SLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQ 112
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL D+ID++ L
Sbjct: 113 LNYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDDAIDNKAL 156
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 157 HDTFAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHV 216
Query: 312 RKEERRARLQAQFSQMRPV 330
K++R+A+L Q Q V
Sbjct: 217 SKKDRQAKLDEQKKQFTNV 235
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 243/583 (41%), Positives = 347/583 (59%), Gaps = 47/583 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A L +N + IRIM+S RDP RK G GN+F+KNL+KSID+KAL+DTFS+F
Sbjct: 97 AHAEWVLATMNLDVIKGNPIRIMWSQRDPGQRKRGVGNVFVKNLEKSIDNKALYDTFSTF 156
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCK+ +D +G SKG+GFV FE +ESA AI+K+NGML+N+ +VFVG F ++ERE+
Sbjct: 157 GRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERES 215
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ +K K + N+++KN E+ D+ L +IF +YG S VM D G+SK FGFV+F++
Sbjct: 216 ELGVKAKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSH 275
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA AV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ + ++QG+NLYIKNL
Sbjct: 276 EDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNL 335
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+I+DE L++ FS FGTITS KVM + +G SKG GFV FS+ ++A++A EMNGK++ S
Sbjct: 336 DDTINDEHLRKEFSPFGTITSAKVMME-NGRSKGFGFVCFSSSKDAAKASREMNGKLVAS 394
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMR----------------PVAMGPSVPPRMPM 342
KPLYV++AQRKEERR L+ Q+ + +R P M PS+P +
Sbjct: 395 KPLYVSLAQRKEERRMHLKNQYMYRLAHLRSISNPVFNPYQLANSSPYFMTPSLPSQSQA 454
Query: 343 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
S L Q + I P + + + P + A F P+ S + +
Sbjct: 455 ALYNASQLAQLRSSPRWISKSIRPPSFHTLTKAICPNIPRAT------FSPLRSTSEIPR 508
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMP--PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 460
R A Q PLP +P P +Y G + + PF S P +
Sbjct: 509 MGATSRVANSPAQMLGPLPGTGTFLPTVPNVPHLKYDAGVDYPEQPF-----SKSPY-IS 562
Query: 461 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
A P S GQ + + + LA+A P +Q+ +LGE L+P+++ + A K+TGML
Sbjct: 563 TLARQPAGHIS-GQE---SLMPSMLASALPPEQKRILGERLFPIIQGISPTLAGKITGML 618
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVLRS-----VAQQQAN 558
LE D +E+LHLLESPE+L KV EA VL++ V Q++ N
Sbjct: 619 LETDNSEILHLLESPESLHCKVKEAAAVLQTHQAKEVTQKEVN 661
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/396 (50%), Positives = 283/396 (71%), Gaps = 15/396 (3%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + N+ RIM+S RDP++RK+G GNIFIKNLD++ID+KALHDTF++FG +L
Sbjct: 105 RALEQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVL 164
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD +G+SKG+GFV +E E+A+NAI +NGML+NDK+V+VGH + ++ER++
Sbjct: 165 SCKVATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEE 224
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ +F N++VKNLD T ++ ++F +YG +TSAV+ D +GKSK FGFVNFE D+A
Sbjct: 225 MRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQ 284
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN + ++ +V +AQKK+ERE+EL+ +EQA E + K+QG+NLYIKNL D +
Sbjct: 285 KAVDELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDV 344
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ F FGTITSCKVMRD G SKG GFV FS+P+EA++A+AEMN KMI +KPLY
Sbjct: 345 DDDKLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLY 404
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP-MYPPGP--------SGLGQQFLYG 357
V++AQR+E RR +L++Q +Q + M + +P Y GP + + G
Sbjct: 405 VSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGLPGSYVNGPLYYPPGPGFPPQPRGMMG 464
Query: 358 QAPPAIIPPQAGFGYQQQL-VPGMRPAG-APMPNFF 391
P ++PP+ +G Q+ VPG P G AP P +
Sbjct: 465 YPQPGMLPPRPRYGPNGQVPVPG--PYGQAPPPQGY 498
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 115/208 (55%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 50 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 109
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 110 LNYSLIKNRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDEAIDNKAL 153
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FGT+ SCKV D +G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 154 HDTFAAFGTVLSCKVATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHI 213
Query: 312 RKEERRARLQ---AQFSQMRPVAMGPSV 336
++ER+++L+ AQF+ + + P V
Sbjct: 214 SRKERQSKLEEMRAQFTNLYVKNLDPEV 241
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 236/553 (42%), Positives = 330/553 (59%), Gaps = 59/553 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LN+ + IRIM+S RDPSIRKSG GNIFIKNLDKSID+KAL+DTFS+FGN
Sbjct: 60 AERALDTLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGN 119
Query: 67 ILSCKIAT-----DGSG---QSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
ILSCK+ D G +S G+GFV FE +E+A+ AI K+NGML+N KQVFVG F++
Sbjct: 120 ILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVK 179
Query: 119 KQER-ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
K ER + ++ + F N++VKNLD S +++L ++F ++G I +AVVMR +G SK FGF+
Sbjct: 180 KTERLKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFI 239
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
NF + A A++ +N K F +++ +VG+AQKK+ER +LK F++ +E V+K++GLNL
Sbjct: 240 NFADHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNL 299
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
Y+KNL DS+DDE+L++ FS+FG ITS KVM D + S+G GFV F TPE A++AL EM+G
Sbjct: 300 YVKNLDDSVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCFKTPEAANKALTEMSG 358
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
MI SKPLYV AQ KE RR++L+AQ++ + M +P MP +
Sbjct: 359 HMIGSKPLYVNFAQPKELRRSQLEAQYNARKQPQM---IPQMMPQF-------------- 401
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 417
IP Q F P G+ + + PV Q Q GG G Q+
Sbjct: 402 -----FIPAQGAFP----------PPGSQIKPRWQPVAGGRQSNQNRGGMSRGGSSQRGA 446
Query: 418 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
+ +A R N ++ P + + P + P
Sbjct: 447 R-----GGNANTAKNAGRIKYNNNARNQPREQPQQT-----------TPNTQEAQTTQAP 490
Query: 478 ITALSTA-LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
L+ LA S + Q+ LLGE L+PLV E A K+TGMLL+M+ +++L L+ES +
Sbjct: 491 SDQLTAEYLAKLSEQDQKQLLGERLFPLVHLREPKNAPKITGMLLDMEVSDILTLIESTD 550
Query: 537 ALKAKVAEAMEVL 549
AL K+ EA++VL
Sbjct: 551 ALNQKIKEAVKVL 563
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 162/298 (54%), Gaps = 24/298 (8%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +L + I L D F G I+S +I D + +S G+ +V F+N + A+ A+
Sbjct: 5 SASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERAL 64
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN + + + +R+ K+ N+F+KNLD+S ++ L F +G I
Sbjct: 65 DTLNYASVKGIPIRIMW----SQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNI 120
Query: 159 TSAVVM---RDGDG-----KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
S V + GD +S +GFV+FE + A KA+ +NG + ++ +VG KK
Sbjct: 121 LSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKK 180
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+ER + L + D F N+Y+KNL S+D+++L E+FS+FG I + VMR
Sbjct: 181 TERLKILSNE---------DSF--TNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGE 229
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G SK GF+ F+ A A+ EMN K +K L+V AQ+K ERRA+L+ F +++
Sbjct: 230 NGASKEFGFINFADHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLK 287
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
+ +LY+ +L + I + L +LF E G I S ++ RD + S G +V F P++A R
Sbjct: 3 YSSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAER 62
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL +N + P+ + +QR
Sbjct: 63 ALDTLNYASVKGIPIRIMWSQR 84
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 255/644 (39%), Positives = 359/644 (55%), Gaps = 113/644 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 116 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 175
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 176 SCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 235
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ T++D +++F +YG +TS+ + RD +GKS+ FGFVNF + AA
Sbjct: 236 MKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAA 295
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D +
Sbjct: 296 KAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDV 355
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DD+KL+++FSEFG ITS KVMRD
Sbjct: 356 DDDKLRQMFSEFGPITSAKVMRDTPVENEDEKPAEEKKEEQEDKDKENKPEETKEGEEGA 415
Query: 272 ------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
G SKG GFV FS P++A++A+AEMN +M+ +KPLYVA+AQRK+ R+++
Sbjct: 416 EKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVRKSQ 475
Query: 320 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP- 378
L+A + M + +G+ QQ++ PP P G Q +P
Sbjct: 476 LEASIQARNQLRMQQAA---------AAAGMPQQYM---QPPVYFAP----GQQPGFIPQ 519
Query: 379 GMRPAGAPMPNFFVPVVSQGQQGQRPG----GRRGAGPVQQTQQPLPIMPHQMPP----- 429
G R P P +P V G+ GQ PG G RG P QQ + MP Q PP
Sbjct: 520 GGRGMPFPQPGMGMPGVQGGRPGQFPGYPQQGGRGGVP-QQIPPNMYGMPGQFPPQYGQP 578
Query: 430 --------------------RGHAYRY-----------PLGRNMQDFPFD---MGAGSML 455
RG P+G M FP + GAG
Sbjct: 579 GTPQFMAAMQQAQQAALSGGRGAPQGGRGGPQGLPGAPPMGGAMPGFPPNNRQQGAGRGG 638
Query: 456 PVPVDMGAGIPRRDASVGQ--PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 513
P G G P+ A G P + L L A P QQ+ +LGE ++P ++ + + A
Sbjct: 639 PNAGRNGNG-PQAQAGRGAEGANPASVLQQQLQAAQPAQQKQILGELIFPKIQAINSELA 697
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
K+TGMLLEMD +E+++L+E +LKAKV EA+ V + Q
Sbjct: 698 GKITGMLLEMDNSELVNLIEDDSSLKAKVDEALAVYDEYVKAQG 741
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD ++ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 59 SASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 119 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 174
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+ +
Sbjct: 175 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 234
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ ++ ++LF ++G +TS + RD G S+
Sbjct: 235 EMKANF-------------TNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSR 281
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 282 GFGFVNFTTHESAAKAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 235/568 (41%), Positives = 337/568 (59%), Gaps = 78/568 (13%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RA+D +NF+ + K RIM+S RDPS+R+SG GNIF+KNL+++ID+K L+DTFS
Sbjct: 90 MADAERAMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSL 149
Query: 64 FGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
FGNILSCK+ TD G S G+G+V +E E+A AI+KL+GMLI+ ++V VGHF+R+ +R
Sbjct: 150 FGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMRRNDR 209
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + N ++KN+ D L + F ++G + SA V R+ ++ FGF+NF
Sbjct: 210 PDI---DSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTLGFGFINFAEH 266
Query: 183 DDAAKAVEALNGKKFDD--------REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 234
+ A AVEALNGK++ ++ YVG+AQKKSERE+EL+ +FE + + KFQG
Sbjct: 267 ESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQG 326
Query: 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALA 293
+NLY+KNL DS+ D+ L++ F+ GTITS +VM+D G S+G GFV +STPEE++RA+
Sbjct: 327 VNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVN 386
Query: 294 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQ 353
EMNGK+I +KP++VA+AQR+E RRA+L+AQ + A GP P M
Sbjct: 387 EMNGKLIANKPIFVALAQRREVRRAQLEAQHANR---AGGPGQPGMM------------- 430
Query: 354 FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV 413
P GAPM +P+ Q RPG G P
Sbjct: 431 --------------------------RAPMGAPMGYPGMPMYMQ-----RPGPGGGMQPA 459
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM---GAGIPRRD- 469
P+MP M P G R P+ M P+ + AG P ++
Sbjct: 460 ------YPMMPQMMGPGGR--RVPMAGRGGRGRGPMPGPGQQPIKFNQQVRNAGPPMQNQ 511
Query: 470 --ASVGQPMPI----TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
G P I ++ALA+ASPE Q+ ++GE LYPL+ Q + + A K+TGMLLEM
Sbjct: 512 PPHQQGAPQAIPHEGALTASALASASPEVQKNMIGERLYPLIHQSQPELAGKITGMLLEM 571
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLRS 551
D +E+LHLLESP+AL +K++EA++VL +
Sbjct: 572 DNSELLHLLESPDALNSKISEALQVLEA 599
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
FQ +LY+ +L +++ L E+FS G + S +V RD + S G +V F +A R
Sbjct: 36 FQTPSLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAER 95
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
A+ MN MI KP + +QR R
Sbjct: 96 AMDTMNFSMIKGKPCRIMWSQRDPSLR 122
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/655 (38%), Positives = 353/655 (53%), Gaps = 105/655 (16%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S +ALD LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++F
Sbjct: 113 SDGEKALDELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAF 172
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 173 GNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 232
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFEN 181
+K F N++VKN+ TD+D + +F ++G +TS+ + RD + GKS+ FGFVNF +
Sbjct: 233 KFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTS 292
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA+KAVE LN K+F + YVG+AQKK ERE+EL+ +E A +E K+QG+NLYIKN
Sbjct: 293 HEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKN 352
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPS------------------------------ 271
L D +DD+KL++LFSEFG ITS KVMR+
Sbjct: 353 LDDEVDDDKLRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEG 412
Query: 272 -------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318
G SKG GFV F P++A++A+AEMN +M+ KPLYVA+AQRK+ R+
Sbjct: 413 DEGDAKADKKPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKN 472
Query: 319 RLQAQF---SQMR-----------------PVAMGPS-----VPPR----MPMYPPG--- 346
+L+A +Q+R PV GP +PP MP PG
Sbjct: 473 QLEASIQARNQLRMQQAAAAAGMPQQFMQAPVFYGPGSQPGFMPPAGGRGMPFPQPGMGL 532
Query: 347 PSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR-------PAGAPMPNF--FVPVVSQ 397
P+ G + GQ P Q G G Q +P M P G PN F+ + Q
Sbjct: 533 PAVQGGR--PGQFPAGYAGQQGGRGGLPQQIPPMYGIPGQFPPQGQYQPNNPQFIAAMQQ 590
Query: 398 GQQGQRPGGR-----RGAGPVQQTQQPLPIMPHQ-----MPPRGHAYRYPLGRNMQDFPF 447
QQ GR RG G +P MP PP G
Sbjct: 591 LQQSNLTAGRGVPVARGPGIQGGLPGSMPGMPGAANMPGYPPNARQQGAGAGAGRGAGGR 650
Query: 448 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 507
+ G G P RDA+ + + A +P QQ+ +LGE ++P ++
Sbjct: 651 NQGPGFAGAAPQG------GRDAAPAEGASVLQTQLAAVGNNPGQQKQILGEVIFPKIQA 704
Query: 508 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPAD 562
+ + A K+TGMLLEM+ E++ L+E+ +L+AKV EA+ V + Q D
Sbjct: 705 IHPELAGKITGMLLEMENAELVALIENEGSLRAKVDEALAVYDDYVRAQGGEAGD 759
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D+LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 120 DELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 176 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 235
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGIS 274
E+K F N+Y+KN+ + D+ + LF +FG +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKS 282
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F++ E+AS+A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAAR 336
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 243/601 (40%), Positives = 342/601 (56%), Gaps = 87/601 (14%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+S A RALD +N+T + +K RIM+S RDP++RKSG GN+F+KNLD SIDHKAL DTFS
Sbjct: 64 VSDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFSL 123
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD +G+S+G+G+V +E++++A +AI+K+N M I DK+V+VGHF+R+ ER
Sbjct: 124 FGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTERS 183
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
++ + N++VKN + L+K F + DG + FG+VNFE D
Sbjct: 184 G---QSDWTNLYVKNFPADWDEATLRKAFEMFAA---------ADGSA--FGWVNFEGHD 229
Query: 184 DAAKAVEALNGKK-----------FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 232
A A++ALNG +VG+AQKK ERE+ELK +F+ A E + K+
Sbjct: 230 AAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAKFDAAKIERIKKY 289
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 291
QG+NL++KNL D++DD++L+E F+E+GTITS +VMR+P +G S+G GFV FS+PEEA++A
Sbjct: 290 QGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKA 349
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM-PMYPPGPSGL 350
+ EMN K+++ KP++VA+AQRKE RRA+L+AQ +Q R+ P + P G
Sbjct: 350 VTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQ------------RLHPAHLSAPYGA 397
Query: 351 GQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR--- 407
+Y P P GM P G P VP+ Q QQ GG
Sbjct: 398 AMPIMYAAGAPGGHP------------MGMAPQGHPG----VPIAGQMQQMSSQGGSNRR 441
Query: 408 -----------------------RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQD 444
R A + LP H MPP
Sbjct: 442 SRNRGGQGGQGQGAQQYKYTQNARNAASMPPNMPQLPPQAHLMPPTVGQQPGQGFPGGPG 501
Query: 445 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 504
M + P + RR P+ ++A LANASP Q+ ++GE LYPL
Sbjct: 502 VAPPMPPLPLQQPPPPGSSQSQRRAPE--DPLTLSA----LANASPTLQKNMIGERLYPL 555
Query: 505 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQL 564
+ + + A K+TGMLLEMD +E+LHLLESP+AL+ KVAEA+EVL+ Q P ++
Sbjct: 556 IHHSQPELAGKITGMLLEMDNSELLHLLESPDALRMKVAEALEVLKQHQAQLQQVPREEA 615
Query: 565 A 565
A
Sbjct: 616 A 616
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 136/297 (45%), Gaps = 42/297 (14%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +L L + F++ G + S ++ D + +S G+ +V F N A+ A+
Sbjct: 12 SASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERAL 71
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D +N LI K + +R+ K+ NVFVKNLD S + L F +G I
Sbjct: 72 DTMNYTLIKSKPCRI----MWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFSLFGNI 127
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+S+ +G+V++E+ D A A+ +N D+E YVG +++ER
Sbjct: 128 LSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER----S 183
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
GQ + NLY+KN D+ L++ F F D S G
Sbjct: 184 GQSDWT-----------NLYVKNFPADWDEATLRKAFEMFAAA-------DGSAF----G 221
Query: 279 FVAFSTPEEASRALAEMNGK-----------MIVSKPLYVAVAQRKEERRARLQAQF 324
+V F + A A+ +NG + + PL+V AQ+K ER L+A+F
Sbjct: 222 WVNFEGHDAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAKF 278
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ +L + L E+F+ G + S +V RD + S G +V F +A R
Sbjct: 10 FHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAER 69
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL MN +I SKP + +QR
Sbjct: 70 ALDTMNYTLIKSKPCRIMWSQR 91
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 256/650 (39%), Positives = 362/650 (55%), Gaps = 115/650 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D SG SKG+GFV +E E+A AI +NGML+N+K+VFVGH + K++R++
Sbjct: 177 SCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+ T+E+ +++F ++G +TSA + RD + GKS+ FGFVNF N + A
Sbjct: 237 MKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHA 296
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E K+QG+NLY+KNL D
Sbjct: 297 ATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDD 356
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPS---------------------------------- 271
IDDEKL+ELF FG+ITS KVMRD
Sbjct: 357 IDDEKLRELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKEGE 416
Query: 272 ---------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
G SKG GFV F+ P+EA++A+++MN +M+ +KPLYVA+AQRK+ R
Sbjct: 417 AETEEASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKDVR 476
Query: 317 RARLQAQFS-----QMRPVAMGPSVPPRM---PM-YPPGP--------SGLGQQF----- 354
+++L+A +M+ A +P + PM +PPG G G QF
Sbjct: 477 KSQLEASIQARNQIRMQQAAAQAGMPQQYMQAPMFFPPGAQQPGFLPQGGRGMQFPPQAG 536
Query: 355 ---------LYGQAPPAIIPPQAGFG--YQQQLVPGMR-------PAGAPMPN----FFV 392
GQ P QAG G QQ+ P M PAG P F+
Sbjct: 537 MPIPGAQGGRPGQFQAGFPPQQAGRGAPAGQQMPPNMYGMGPGQFPAGGQYPQQNNPQFL 596
Query: 393 PVVSQGQQGQRPGGRRGAGPVQ---------QTQQPLPIMPH-----QMPPRGHAYRYPL 438
+ Q GG GP+Q QQ +P MP RG P
Sbjct: 597 AAMQAAQLTAGRGGPNARGPMQGMPPNMAMPMGQQGMPQFQQGARQGGMPGRGAQAGRP- 655
Query: 439 GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLG 498
G+ FP G G +P + IP+ G +P T L + +P+QQ+ +LG
Sbjct: 656 GQFAGGFPPQAGRG--MPQQIPGMQQIPQMAQEGG--VPATMLQAQVQAVAPQQQKQILG 711
Query: 499 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
E+L+P ++ L+ + A K+TGMLLEM+ E+++L+E +L+AKV EA+ V
Sbjct: 712 EALFPKIQVLQPELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTV 761
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 155/294 (52%), Gaps = 22/294 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D S +S G+ +V + + A+
Sbjct: 60 SASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ K NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + AA+A++ +NG ++++ +VG K +R+ +
Sbjct: 176 LSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFE 235
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 274
E+K F N+Y+KN+ +E+ +ELF +FG +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKS 282
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F E A+ A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAAR 336
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/319 (55%), Positives = 251/319 (78%), Gaps = 2/319 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + N++ RIM+S RDP++RK+G GNIFIKNLD+ IDHKALHDTF++FGN+L
Sbjct: 112 RALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVL 171
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI- 127
SCK+ATD +G+S+GFGFV ++ E+A AI +NGML+NDK+VFVGH++ K+ER+
Sbjct: 172 SCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDE 231
Query: 128 -KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K++F N++VKNLD TD++ +F ++G +TSAVV +D +GKSK FGFVNF++ + A
Sbjct: 232 QKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQ 291
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+AL+ + + ++ +V +AQKK+ERE+EL+ +EQA E + K+QG NLYIKNL D +
Sbjct: 292 AAVDALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDM 351
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ F FGTITSCK+MRD G SKG GFV +S+PEEA++A+AEMN KM+ SKPLY
Sbjct: 352 DDDKLRAEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLY 411
Query: 307 VAVAQRKEERRARLQAQFS 325
V+ AQR+E RR +L++Q +
Sbjct: 412 VSPAQRREVRRQQLESQIA 430
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 17/195 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 57 SLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 116
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A+++T QG N++IKNL + ID + L
Sbjct: 117 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDHKAL 160
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG + SCKV D +G S+G GFV + T E A A+ +NG ++ K ++V
Sbjct: 161 HDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYI 220
Query: 312 RKEERRARLQAQFSQ 326
K+ER+A + Q SQ
Sbjct: 221 SKKERQAHIDEQKSQ 235
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 260/592 (43%), Positives = 344/592 (58%), Gaps = 67/592 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK ID+K+++DTFS F
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF--LRKQER 122
GNILSCK+A D G SKG+GFV FE +E+AQNAI K+NGML+ K+VFVG F ++ R
Sbjct: 144 GNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E K+ NV+VKN + E L+K+F +YGTITS VM DGKSK FGFV F
Sbjct: 204 ELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGFGFVAFAEP 262
Query: 183 DDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
++A AV+ALN + D + +V +AQKKSER ELK + EQ E + K+QG+NLY+K
Sbjct: 263 EEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVK 322
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +S+DDE LK+ F FG ITS KVM D +G SKG GFV F PEEA+ A+ EMN KM+
Sbjct: 323 NLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMV 382
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVP-----PRMPMYPPGPSGLGQQF 354
SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP P+ P PGP
Sbjct: 383 CSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPGGGLYPQQPQ--PGPG------ 434
Query: 355 LYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ 414
Y A P + Q FG Q + RP G P PV +Q Q PG V
Sbjct: 435 -YYVANP--MQQQRNFGGPQMV----RPGGRWGPQNQYPVQNQYMMAQGPG-------VY 480
Query: 415 QTQQPLPIMPHQMPPRGHAYRYPL----GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
Q + P Q PRG + +Y G MQ P AG P P++
Sbjct: 481 QNRMGRP-QNQQGGPRGPSQQYSQVAQGGIRMQGPPRPQNAGVQQPNVQRPPPQQPQQQR 539
Query: 471 S-------------------------VGQPMPITALSTALANASPEQQRTLLGESLYPLV 505
+G P+T S LA A+P++Q+ LLGE +Y L+
Sbjct: 540 PAPTGTKAQPQAYQQPYQQQRPQGIVIGGQEPLT--SAMLAAAAPQEQKQLLGERIYALI 597
Query: 506 EQLE--RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
E+L A K+TGM+LE+D +E++ +L+ E ++KV EA VL S +Q
Sbjct: 598 EKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLASSQKQ 649
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 166/301 (55%), Gaps = 18/301 (5%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFE 89
++P+ ++++ +L ++ L + FS+ G +LS ++ D + + S G+ +V F+
Sbjct: 22 QNPTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQ 81
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
A+ A+D +N ++ K + + +R+ ++ N+F+KNLD+ ++ +
Sbjct: 82 QPADAERAMDTMNFEALHGKPMRI----MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIY 137
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
F +G I S V D +G SK +GFV+FE + A A++ +NG ++ +VGK Q
Sbjct: 138 DTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQP 197
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+++R +EL ET K+ N+Y+KN GD + E L++LF+++GTITSC VM
Sbjct: 198 RAQRNREL--------GETAKKY--TNVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTS 247
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK--PLYVAVAQRKEERRARLQAQFSQM 327
G SKG GFVAF+ PEEA A+ +N + L+V AQ+K ER A L+ + Q
Sbjct: 248 -DGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQH 306
Query: 328 R 328
+
Sbjct: 307 K 307
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/379 (54%), Positives = 267/379 (70%), Gaps = 20/379 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNFTPL K IR+M+S+RDPS+RKSG N+F+KNL+ +ID K L++ FSSFG
Sbjct: 56 ATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGA 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD +GQSKG+GFVQ+E +ESA+ AI+ LNGML N++++FVG +R+++RE
Sbjct: 116 ILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV-- 173
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF NV++KNL +++DL++ F +G ITSAVVMRD DG SKCFGFVNF+ + A
Sbjct: 174 ---KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAI 230
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE NGK D+ YVG+AQKK ER+ ELK +F + VDK G+NLY+KN+ D I
Sbjct: 231 EAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGI 290
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+DE LK+LF EFG + SCKVM D G SKGSGFV+F+T E RA+ MNG+++ KPLY
Sbjct: 291 NDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLY 350
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ--APPAII 364
V +AQ KEER+A L A F+Q R +AM S Y GP QQ +G +P I
Sbjct: 351 VGLAQPKEERKAMLMAHFAQ-RNLAMAAS------QY-AGP----QQVYFGHPSSPGPIA 398
Query: 365 PPQ-AGFGYQQQLVPGMRP 382
PPQ A FG+ Q VPGM P
Sbjct: 399 PPQGAVFGFPQHFVPGMGP 417
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 21/201 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L E+ + L +F + + + V RD G S +G+VNF + +A +A+EA
Sbjct: 3 SLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 62
Query: 192 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
LN +GK + S R+ L+ K NL++KNL +ID +
Sbjct: 63 LNFTPL------IGKYIRVMFSNRDPSLR------------KSGRANLFVKNLEPNIDSK 104
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
L E+FS FG I SCKV D +G SKG GFV + T E A A+ +NG + ++ ++V +
Sbjct: 105 NLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGL 164
Query: 310 AQRKEERRARLQAQFSQMRPV 330
R+ +R + + + P
Sbjct: 165 HMRRRDREVKFTNVYIKNLPT 185
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 252/580 (43%), Positives = 348/580 (60%), Gaps = 73/580 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G S+GFGFV FE E+A AI+ +NGML+ND++VFVGHF +QERE
Sbjct: 123 GNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKN + DE L+++F ++G S VM D +G+S+ FGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R YVG+AQK+SER+ ELK +FEQ +E V+++QG+NLY+KNL
Sbjct: 242 EEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDIIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L +Q+ Q G + P++P P+ FL PA
Sbjct: 361 KPLYVALAQRKEERKAILTSQYMQRLSTLRGLN----GPLFPQ-PTNY---FL-----PA 407
Query: 363 I-IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
I PP Y V +RP AP + P S P LP
Sbjct: 408 IPQPPARATFYSPSTVAPVRP--APRWTSYSPRSS------------CESPTXLIVLLLP 453
Query: 422 IMPHQM-----PPRGHAYRYP-LGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
P + R + + P G +MQ ++G + MG G P S G+
Sbjct: 454 ATPRRTVSNISTVRQASTQVPRAGPHMQRVA-NIGTQT-------MGTGCP---GSPGRA 502
Query: 476 MPITALSTALAN-----------------------ASPEQQ-RTLLGESLYPLVEQLERD 511
+ S+A+ N ++P Q+ + +LG+ LYPL+ +
Sbjct: 503 VAQYKYSSAVRNTHQVMEPAVHIQGQEPLTASMLASAPVQEQKQMLGDRLYPLIYGIHAQ 562
Query: 512 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
A K+TGMLLE+D +E+L LLESPE+L +K+ EA+ L++
Sbjct: 563 LAGKITGMLLEIDNSELLLLLESPESLHSKIEEAIAALQA 602
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/326 (54%), Positives = 253/326 (77%), Gaps = 2/326 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + N+ RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF++FGN+L
Sbjct: 98 RALEQLNYSSIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVL 157
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G SKG+GFV +E E+A+NAI +NGML+NDK+V+VG + ++ER++
Sbjct: 158 SCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKIDE 217
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ F N++VKN+D TDE+ + +F +YG + S+++ RD G++ FGFVNFE ++A
Sbjct: 218 MRAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQ 277
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+AL+ F R+ YV +AQKK+ERE EL+ Q++QA +E ++K+QG+NLYIKNL D +
Sbjct: 278 KAVDALHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLEDDV 337
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+ F FGTITSC+VMRD G SKG GFV +S P+EA++A+AEMN KMI SKPLY
Sbjct: 338 DDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPLY 397
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAM 332
V++AQRKE RR +L++Q +Q + + M
Sbjct: 398 VSLAQRKEIRRQQLESQIAQRQQLRM 423
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 43 SLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 102
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 103 LNYSSIKNRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 146
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 147 HDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHI 206
Query: 312 RKEERRAR---LQAQFSQMRPVAMGPSV 336
++ER+++ ++A F+ + + P V
Sbjct: 207 SRKERQSKIDEMRAHFTNLYVKNIDPEV 234
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 239/558 (42%), Positives = 325/558 (58%), Gaps = 36/558 (6%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN++ + + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTFS+FG IL
Sbjct: 107 QAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGRIL 166
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G SK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 167 SCKVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEE 226
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NVFVKNL TD++LK++F YG ITS+ + +D +GKSK FGFVNF+N +DA
Sbjct: 227 MKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAV 286
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + YVG+AQKK ER +EL+ Q+E E + K+QG+NL+IKNL D+I
Sbjct: 287 KAVDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTI 346
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+ F FG ITS +VM D G SKG GFV FS+PEEA++A+ EMN +M+ KPLY
Sbjct: 347 DSEKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLY 406
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR++L+ Q + M + P YGQ P PP
Sbjct: 407 VALAQRKDVRRSQLEQQIQARNQMRMQNAAAAAAAAGGAIPGQFMNPMFYGQQ-PGFFPP 465
Query: 367 QAGFGYQQQLVPGMRPAGAPMPN---FFVPVVSQGQQGQRPGGRRGAG---PVQQTQQPL 420
G + G P P N + + GQ P + GAG P QQ
Sbjct: 466 PGANGGRPNGANGAGPNAGPNANPQMMMAAAAAAARGGQIPPPQAGAGWGRPNPNGQQIP 525
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 480
P+ + MPP Y G N Q GA P G+P
Sbjct: 526 PV--YGMPP-----VYQNGPNGQ----------------PRGAPAPGMYPPNGRPTKARD 562
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLER----DAAAKVTGMLLEMDQTEVLHLLESPE 536
L+ L++ PEQQ+ +LGE LYP + R +AA K+TGM+L++D E+L LLE E
Sbjct: 563 LAAILSSVPPEQQKRILGEELYPKIVSTGRANEPEAAGKITGMMLDLDNQEILSLLEDDE 622
Query: 537 ALKAKVAEAMEVLRSVAQ 554
+A+ Q
Sbjct: 623 LFNNHFEDALTAYEEYKQ 640
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V L+ S + L +IF G ++S V RD KS + +VNF DD +A+E L
Sbjct: 53 LYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDL 112
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N + R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGEG----------------NIFIKNLHPAIDNKALH 156
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 157 DTFSAFGRILSCKVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 216
Query: 313 KEERRARLQ 321
K++R ++ +
Sbjct: 217 KKDRESKFE 225
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ D + E+L D++E ++ +E+ +E + KE + + +LY+
Sbjct: 2 SSDPTQIQESLEKLSLDNKEQ---PPKESTEQSKETTTETSAPAKENLGETSA-SLYVGE 57
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI 300
L S+++ L E+FS G ++S +V RD + S G +V F ++ +A+ ++N +I
Sbjct: 58 LNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDLNYSLI 117
Query: 301 VSKPLYVAVAQR 312
+P + +QR
Sbjct: 118 EGRPCRIMWSQR 129
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 241/579 (41%), Positives = 342/579 (59%), Gaps = 63/579 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A++V+N + LN ++IR+M+S RD RKSG GN+F+KNL SI+ L + F FGN
Sbjct: 68 ATNAIEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGN 127
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LS K+AT G+SKG+GFVQFE++ESA AI+ LNG + DKQ++VG F+RK +R
Sbjct: 128 VLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLAN 187
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K+ N++VKNLD +E L++ F E+G I+S ++ RD +G S+ FGF+NFEN+DDA
Sbjct: 188 PDIKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAK 247
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+A+E LNG + + Y+ +AQKK+ERE+ L+ +E+ KE V K++G N+Y+KN+ D +
Sbjct: 248 RALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDV 307
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DE+L+E FS+FGTITS K+MRD GI+KG GFV FS P+EA RA+ + G M KPLY
Sbjct: 308 TDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLY 367
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVP-----------PRMPMYPPGPSGLGQQFL 355
+A+AQRKE+R+ +L+ QF+Q GPS P + PP S G F
Sbjct: 368 LAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVASRPGLMF- 426
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
P + P Y PG +P +P+P +P S+ Q Q G G
Sbjct: 427 ---QPLGMRPGWRPNTYTSPARPGFQP--SPLP--IIPTASR-QPRQNRGKMNG------ 472
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDM----------GAGSMLPVPVDMGAGI 465
PI+ HQ + +Y +N QD + G + VP
Sbjct: 473 -----PILSHQNGVQSVSYM----QNSQDANQSVVTAKSSSNQQWTGQVKYVPNARSCET 523
Query: 466 PRR--------------DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD 511
+ D S G + LS+ LA++ P+QQ+ +LGE LYPLV++ + D
Sbjct: 524 NKTSGASAAAAAFNSVGDVSQGSQI----LSSMLASSPPDQQKQILGEHLYPLVQKRKPD 579
Query: 512 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
AAK+TGMLLEMD +E+L LLESPE+L AKV EA++VL+
Sbjct: 580 LAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLK 618
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 164/287 (57%), Gaps = 17/287 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAID 99
++++ +L + L D FS F ++ S +I D S G+S +G+V F + + A NAI+
Sbjct: 14 ASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIE 73
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N ++N + + V R+ A K+ NVFVKNL +S L+++F ++G +
Sbjct: 74 VMNHSMLNGRAIRV----MWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVL 129
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ V DGKSK +GFV FE+ + A A+E+LNG D++ YVGK +KS+R
Sbjct: 130 SSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDR------ 183
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ K+ NLY+KNL I +E L+E FSEFG I+S + RD +G+S+G GF
Sbjct: 184 ----VLANPDIKY--TNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGF 237
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
+ F ++A RAL +NG + SK +Y+A AQ+K ER L+ + +
Sbjct: 238 INFENSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEE 284
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 253/594 (42%), Positives = 344/594 (57%), Gaps = 64/594 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF ++ + +RIM+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS F
Sbjct: 114 ADAERALDTMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLF 173
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+ATD G SKG+GFV FE + SAQ AI+K+NGML++DK+VFVG F + +R
Sbjct: 174 GNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVFVGKFQPRAQRMK 233
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E K+ NVFVKN E + LK++F +YG I SAVVM D +GK K FGFV + +
Sbjct: 234 ELGESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADP 293
Query: 183 DDAAKAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A+KAV+ LN + E V +AQKKSER ELK ++E +E V ++QG+NLY+K
Sbjct: 294 EAASKAVDDLNESILEGTELKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVK 353
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
N+ + + DE L+ F++FGTITS KVM D +G SKG GFV F PEEA+ A+ EMN KMI
Sbjct: 354 NIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMI 413
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGP----SVPPRMPMYPPGPSGL----- 350
+KPLYVA+AQRKE+RRA+L +Q+ Q + + MG VP +Y PG G
Sbjct: 414 GAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQAAGGVPGMTQIYQPGQQGYYVPNP 473
Query: 351 ----GQQFLYGQAPPAIIPP----------------QAGFGYQQQLVPGMRPAG------ 384
G+ QA P PP Q G+ QQ P MR
Sbjct: 474 MAAPGRPAFQPQAAPMRGPPGQRMFNNQVFMQYPFNQQRQGFPQQGRPPMRTQDGRQQYG 533
Query: 385 -APMPNFFVPVVSQGQQ------GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP 437
AP PN V G Q Q+ G RGA Q+P +Q PPR H +P
Sbjct: 534 MAPRPNGPPRVGGPGAQMGGAPIRQQGGAPRGATHGAPQQKPY----YQGPPRQH---HP 586
Query: 438 LGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 497
+ ++ Q P +GI GQ T S LA A+P++Q+ LL
Sbjct: 587 VQQHSQHAPQQQQQQQQQQQQPG-NSGI----VIHGQE---TLTSHMLAQAAPQEQKQLL 638
Query: 498 GESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
GE +Y L+E++ A K+TGM+LE+D E++ +L+ + ++KV EA VL
Sbjct: 639 GERIYALIEKMFPNHKDAGKITGMMLEIDNAELIMMLQDADLFRSKVEEAFTVL 692
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LYI +L + + L E FS G + S +V RD S +S G +V F P +A RAL
Sbjct: 63 SLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 122
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 123 MNFEIIHGRPMRIMWSQR 140
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 254/659 (38%), Positives = 353/659 (53%), Gaps = 117/659 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 110 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+AQNAI +NGML+NDK+VFVGH + K++R++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEE 229
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKN+D+ TTDE+ +++F ++G ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 230 MKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESA 289
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AV+ LN K F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 290 AAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 349
Query: 246 IDD---------------------------------------------EKLKELFSEFGT 260
IDD E+ K+ +E
Sbjct: 350 IDDEKLRDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEESKDEAAEKAE 409
Query: 261 ITSCKVMRDPS--------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
K + S G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQR
Sbjct: 410 TKDTKEAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 469
Query: 313 KEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGY 372
K+ RR++L+A + + +G+ Q F+ PP P
Sbjct: 470 KDVRRSQLEASIQARNTIRQQQAAA---------AAGMPQPFM---QPPVFYGPG----- 512
Query: 373 QQQLVPGMRPAGAPM--PNFFVPVVSQGQQGQRPG-----GRRGAGPVQQT--------Q 417
QQ +P R G P P +P + G+ GQ G G RG P QQ
Sbjct: 513 QQNFLPNQR-GGMPFQQPGMVIPQMPGGRHGQFSGFPGQQGGRGMNPNQQIPPNAYGLGA 571
Query: 418 QPLPIMPHQMPPRGHAY------RYPLGRNMQDFPFDMG----AGSMLP-------VPVD 460
Q LPI P G Y + P GR P G M P +P+
Sbjct: 572 QGLPISMQGGMPNGLNYPQMAQVQAPFGRGRGQVPAVQGMPPNVQGMGPNAQFGRGMPMQ 631
Query: 461 MGAGIPRRDA-------SVGQPMPITA---LSTALANAS-PEQQRTLLGESLYPLVEQLE 509
G G P + + GQ ++ L+ + NA+ P QQ+ +LGE++YP + +
Sbjct: 632 QGMGRPGQAGRGQGPAQAAGQRDETSSPSGLTLQMLNAAPPAQQKQMLGEAIYPKIHAHQ 691
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 568
+ A K+TGMLLEMD E+L L++ ALKAKV EA+ V + + + D +S
Sbjct: 692 PELAGKITGMLLEMDNAELLALVDDDTALKAKVDEALTVYDEYVKNKGSESGDAAPDVS 750
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 157/294 (53%), Gaps = 22/294 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N + A+
Sbjct: 53 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 113 EDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 168
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K +R+ +
Sbjct: 169 LSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFE 228
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 274
E+K F N+Y+KN+ DE+ +ELF +FG ITS + RD SG S
Sbjct: 229 EMKANF-------------TNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKS 275
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F++ E A+ A+ +N K S+ LYV AQ+K ER L+ Q+ R
Sbjct: 276 RGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAAR 329
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/347 (55%), Positives = 255/347 (73%), Gaps = 4/347 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 38 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 97
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 98 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 156
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 157 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 216
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 217 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 276
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 277 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 335
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
KPLYVA+AQRKEER+A L Q+ Q P P P PSG
Sbjct: 336 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 382
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 68/103 (66%), Gaps = 7/103 (6%)
Query: 466 PRRDASVGQPMPITAL-------STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
PR A +P P + ++ LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 410 PRWTAQGARPHPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 469
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
MLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A
Sbjct: 470 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 512
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 251 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
L E FS G I S +V RD + S G +V F P +A RAL MN +I KP+ +
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 310 AQR 312
+QR
Sbjct: 62 SQR 64
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 258/663 (38%), Positives = 366/663 (55%), Gaps = 119/663 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D SG SKG+GFV +E E+A AI +NGML+N+K+VFVGH + K++R++
Sbjct: 177 SCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+ T+E+ +++F ++G +TSA + RD + GKS+ FGFVNF N + A
Sbjct: 237 MKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHA 296
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E K+QG+NLY+KNL D
Sbjct: 297 ATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDE 356
Query: 246 IDDEKLKELFSEFGTITSCKVMRD------------------------------------ 269
IDDEKL+ELF+ FG ITS KVMRD
Sbjct: 357 IDDEKLRELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEASAP 416
Query: 270 ----PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325
P G SKG GFV F+ P+EA++A+++MN +M+ +KPLYVA+AQRK+ R+++L+A
Sbjct: 417 KAKRPLGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEASIQ 476
Query: 326 -----QMRPVAMGPSVPPRM---PM-YPPGP--------SGLGQQF-------------- 354
+M+ A +P + PM +PPG G G QF
Sbjct: 477 ARNQIRMQQAAAQAGMPQQYMQAPMFFPPGAQQPGFLPQGGRGMQFPPQAGMPIPGAQAG 536
Query: 355 LYGQAPPAIIPPQAGFG--YQQQLVPGMR-------PAGAPMPNFFVP------------ 393
GQ P QAG G QQ+ P M PAG P P
Sbjct: 537 RPGQFQAGFPPQQAGRGAPAGQQMPPNMYGMGPGQFPAGGQYPQQNNPQFLAAMQAAQAA 596
Query: 394 VVSQGQQGQRPGGRRGAGPVQ---------QTQQPLPIMPH-----QMPPRGHAYRYPLG 439
+S G+ GG GP+Q QQ +P MP RG P G
Sbjct: 597 QLSAGR-----GGPNARGPMQGMPPNMAMPMGQQGMPQFQQGARQGGMPGRGAQAGRP-G 650
Query: 440 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 499
+ FP G G +P + +P+ G P T L + + P+QQ+ +LGE
Sbjct: 651 QFAGGFPPQAGRG--MPQQIPGMPQMPQMPQEGGVP--TTLLQAQVQSVPPQQQKQILGE 706
Query: 500 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN 559
+L+P ++ L+ + A K+TGMLLEM+ E+++L+E +L+AKV EA+ V + +
Sbjct: 707 ALFPKIQVLQPELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTVYDEYVKNRGEG 766
Query: 560 PAD 562
D
Sbjct: 767 EGD 769
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 155/294 (52%), Gaps = 22/294 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ K NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + AA+A++ +NG ++++ +VG K +R+ +
Sbjct: 176 LSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFE 235
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 274
E+K F N+Y+KN+ +E+ +ELF +FG +TS + RD SG S
Sbjct: 236 EMKANF-------------TNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKS 282
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F E A+ A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAAR 336
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 258/584 (44%), Positives = 344/584 (58%), Gaps = 49/584 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK ID+K+++DTFS F
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF--LRKQER 122
GNILSCK+A D G SKG+GFV FE +E+AQNAI K+NGML+ K+VFVG F ++ R
Sbjct: 144 GNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E KF NV+VKN E + L+K+F +YGTITS VM +GKSK FGFV F
Sbjct: 204 ELGETAKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTS-EGKSKGFGFVAFAEP 262
Query: 183 DDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
++A AV+ALN + D + +V +AQKKSER ELK + EQ E + K+QG+NLY+K
Sbjct: 263 EEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVK 322
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +S+DDE LK+ F FG ITS KVM D +G SKG GFV F PEEA+ A++EMN KM+
Sbjct: 323 NLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKMV 382
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP MY P G G Y A
Sbjct: 383 CSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPGG-GMYSPAQPGPG----YYVA 437
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
P + Q F QL RP G P PV SQ Q PG + Q QQ
Sbjct: 438 NP--MQQQRNFVGGPQLA---RPGGRWGPQNQYPVQSQYMMAQGPGVYQNRMGRPQNQQG 492
Query: 420 LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG-------------------SMLPVPVD 460
P + PP+ ++ G MQ P AG P
Sbjct: 493 GP----RGPPQQYSQVAQGGVRMQGPPRVPNAGVQQQNVQRPPPQQLQQQQQRPAPSGPK 548
Query: 461 MGAGIPRRDASVGQPMPITA-----LSTA-LANASPEQQRTLLGESLYPLVEQL---ERD 511
+ +P I L+TA L+ A+P++Q+ LLGE +Y L+E+L +D
Sbjct: 549 APPQPYNQQYQQPRPQGIVIGGQEPLTTAMLSAAAPQEQKQLLGERIYALIEKLYPGHKD 608
Query: 512 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
A K+TGM+LE+D +E++ +L+ + ++KV EA VL S +Q
Sbjct: 609 -AGKITGMMLEIDNSELIMMLQDSDLFRSKVDEAASVLASAQKQ 651
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 166/301 (55%), Gaps = 18/301 (5%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFE 89
++P+ ++++ +L ++ L + FS+ G +LS ++ D + + S G+ +V F+
Sbjct: 22 QNPTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQ 81
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
A+ A+D +N ++ K + + +R+ ++ N+F+KNLD+ ++ +
Sbjct: 82 QPADAERAMDTMNFEALHGKPMRI----MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIY 137
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
F +G I S V D +G SK +GFV+FE + A A++ +NG ++ +VGK Q
Sbjct: 138 DTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQP 197
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+++R +EL ET KF N+Y+KN G+ + + L++LF+++GTITSC VM
Sbjct: 198 RAQRNREL--------GETAKKF--TNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTS 247
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK--PLYVAVAQRKEERRARLQAQFSQM 327
G SKG GFVAF+ PEEA A+ +N + L+V AQ+K ER A L+ + Q
Sbjct: 248 -EGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQH 306
Query: 328 R 328
+
Sbjct: 307 K 307
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/361 (54%), Positives = 271/361 (75%), Gaps = 17/361 (4%)
Query: 14 LNFTPL--------NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
LN+T + ++K +RIM+SHRDP+ RKSG GNIFIKNLDK ID+KALHDTF++FG
Sbjct: 88 LNYTSVIPGKEGGEDSKPMRIMWSHRDPAFRKSGVGNIFIKNLDKDIDNKALHDTFTAFG 147
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
ILSCK+ATD +G SKG+GFV +E +E+AQ AI+K+NGML+ K+VFVG FL++ ER V
Sbjct: 148 TILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGPFLKRTER-PV 206
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
+ + NVFVKNL E+ TDE+++K+F E+G +TS +M+D GKSK FGF+NFE+A+ A
Sbjct: 207 DKEQHYTNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGA 266
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AV ALNGK+ D +E Y G+AQKK+ERE ELK +F++ +E + K+QG+NLY+KNL D
Sbjct: 267 HAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVDE 326
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+DD++L+ F+ GTITS KVM+D +G SKG GFV +S+PEEA+RA+ EMNGKM++ KP+
Sbjct: 327 VDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNGKMLLGKPM 386
Query: 306 YVAVAQRKEERRARLQAQFSQMR--PVAMGPSVPPRMPM---YPPGPSGLGQQFLYGQAP 360
YVA+AQR+E RR +L+ Q++Q R P++ P+ P +PM +PP QQ+ AP
Sbjct: 387 YVALAQRREVRRQQLEQQYTQQRVAPMSGRPNAPGPVPMPGVFPPNAVSFPQQYF---AP 443
Query: 361 P 361
P
Sbjct: 444 P 444
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 105/198 (53%), Gaps = 8/198 (4%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 190
++++V +LD T+ L +IF + G + S V RD +S + +VN+ +A DAA A
Sbjct: 24 SSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAAAAER 83
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDE 249
A+ + V ++ E + ++ + ++ + G+ N++IKNL ID++
Sbjct: 84 AIEALNYTS----VIPGKEGGEDSKPMRIMWSH--RDPAFRKSGVGNIFIKNLDKDIDNK 137
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
L + F+ FGTI SCKV D +G SKG GFV + E A A+ ++NG ++ K ++V
Sbjct: 138 ALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGP 197
Query: 310 AQRKEERRARLQAQFSQM 327
++ ER + ++ +
Sbjct: 198 FLKRTERPVDKEQHYTNV 215
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/431 (50%), Positives = 290/431 (67%), Gaps = 24/431 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSALRQSGPRPA 461
Query: 423 MPHQMPPRGHA 433
+ H + P G+A
Sbjct: 462 LRH-LAPTGNA 471
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/550 (42%), Positives = 331/550 (60%), Gaps = 77/550 (14%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A ALD +NF + + IRIM+S RDP +RKSG GNIFIKNL++SID+KAL+DTFS+F
Sbjct: 63 ADAELALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE +E+AQ AI +NGML+N+++VFV HF +QERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREA 181
Query: 125 -VAIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ ++ +F NV+VKNL ++ L+++F ++G S VMRD G S+ FGFVNFE
Sbjct: 182 ELGVRAMEFTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA--MK-ETVDKFQGLNLYI 239
++A KAV +NGK+ + YVG+AQK +ER+ ELK +F+Q MK + ++ +QG+NLY+
Sbjct: 242 EEAQKAVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYV 301
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL DSID+E+L++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG +
Sbjct: 302 KNLDDSIDNERLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCI 360
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
+ +KPLYVA+AQRK+ER+A L QF Q R +
Sbjct: 361 LGTKPLYVALAQRKDERKAILTNQFMQQRLSNVW-------------------------- 394
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ- 418
A+ P G +QQ + ++F+P V Q + +P + V+Q +
Sbjct: 395 --ALGGPHLG-SFQQPV------------SYFLPTVPQVRACLQPDSQ-----VEQEESF 434
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-- 476
I+P + P +P+ + + P + M PR V +P
Sbjct: 435 KANIVPRLLLPETAGGFHPVSKRADENP-----------SLRM---CPRHHVQVQEPAVC 480
Query: 477 -----PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 531
P+T + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +
Sbjct: 481 IPGQEPLTV--SMLAAAPLHKQKQMIGERLYPLIYNVHTQLAGKITGMLLEIDNSELLFM 538
Query: 532 LESPEALKAK 541
LESPE+L AK
Sbjct: 539 LESPESLNAK 548
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/326 (54%), Positives = 255/326 (78%), Gaps = 2/326 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + ++ RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF++FGN+L
Sbjct: 104 RALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G+SKG+GFV +E E+A AI +NGML+NDK+V+VG + ++ER++
Sbjct: 164 SCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K +F NV+VKN+D TDE+ +++F ++G +TSAV+ RD +G+SK FGFVNFE ++A
Sbjct: 224 MKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQ 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
K VE+L+ + + ++ +V +AQKK+ERE+EL+ +EQA E + K+QG+NLYIKNL D +
Sbjct: 284 KGVESLHDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEV 343
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L++ F FGTITS KVMRD G SKG GFV FS+P+EA++A+AEMN KMI +KPLY
Sbjct: 344 DDERLRQEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLY 403
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAM 332
V++AQR+E RR +L++Q +Q + M
Sbjct: 404 VSLAQRREVRRQQLESQIAQRNQIRM 429
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 20/198 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 110 NYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEGIDNKALH 153
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 154 DTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHIS 213
Query: 313 KEERRARLQ---AQFSQM 327
++ER+++++ AQF+ +
Sbjct: 214 RKERQSKIEEMKAQFTNV 231
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/431 (50%), Positives = 289/431 (67%), Gaps = 24/431 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILNQFQPAA-GGYFV-----PA 412
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 413 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPT 461
Query: 423 MPHQMPPRGHA 433
+ H + P G+A
Sbjct: 462 LRH-LAPTGNA 471
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/347 (55%), Positives = 255/347 (73%), Gaps = 4/347 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
KPLYVA+AQRKEER+A L Q+ Q P P P PSG
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 407
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 234/585 (40%), Positives = 336/585 (57%), Gaps = 39/585 (6%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
F + A ALD LN + + +K IR+M+S+RDP R+SG GNIF+KNL+ S+D+ +L + F
Sbjct: 91 FSRADAVMALDKLNHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELF 150
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S FG++LSCK+A + G S+G+GFVQF ++ESA AI LNG L ND+++ V F++K E
Sbjct: 151 SKFGDVLSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSE 210
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R + KF N+++K+LD+ T+E +K F ++G I S +MR DG S FGFV+F+N
Sbjct: 211 R-SANNDDKFTNLYMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQN 269
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KA E ++G + YV +AQKK ER+Q L+ E+ E + K N+YIKN
Sbjct: 270 PESAIKAQETMHGMLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIITKSNESNVYIKN 329
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
+ D +DD+ L+ F+E+G ITS KVMRD GIS+G GFV +STPEEA + M G M
Sbjct: 330 IHDEVDDDALRARFAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFF 389
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
KPLYVA+ QRKEERRA+LQ F+Q+ + V P M P+G Q +Y P
Sbjct: 390 GKPLYVAIFQRKEERRAKLQQHFAQLARM-----VGPTNSMI---PTGYPQ--VYFAHPN 439
Query: 362 AII---PPQAGF-----GYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV 413
A I PP+ GF G + P M P+ +P P++ + R R G
Sbjct: 440 AHIPQGPPRHGFVYPPMGLSHEWRPNMFPSAPNLPQIHSPMMPNSPRHYRSNRGRMGG-- 497
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
PLP H M HA +M F+ V M G+ ++
Sbjct: 498 --NMMPLPHAVHAMNYVTHAQPTKEFMSMPRQRFNHSKYFSNDV---MANGL-----AIH 547
Query: 474 QPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 529
Q P++ + S+ LA+A P +Q+ LLG LYPLVE+ + + A+K+TGMLLE+D +EV+
Sbjct: 548 QSDPVSTMNDSFSSYLASAPPAEQKNLLGNRLYPLVERHQPELASKITGMLLELDNSEVV 607
Query: 530 HLLESPEALKAKVAEAMEVLRSVA----QQQANNPADQLASLSLN 570
LL S E L KV E +++L++ +A +P + S S+N
Sbjct: 608 TLLCSSEMLSVKVDECVQLLQATKPKTEDHEALHPGFMMESPSVN 652
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 163/287 (56%), Gaps = 18/287 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +L + + + L D FS G + S ++ D + +S +G+V + ++ A A+DKL
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N L+ DK + V R+ A ++ N+FVKNL+ S + L+++F ++G + S
Sbjct: 104 NHSLVLDKPIRV----MWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSC 159
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V ++ DG S+ +GFV F + + A +A+ LNG F+DR+ +V KKSER
Sbjct: 160 KVAKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERS------- 212
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
DKF NLY+K+L D I +E +K FS+FG I S K+MR P G S G GFV+
Sbjct: 213 ----ANNDDKFT--NLYMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVS 266
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F PE A +A M+G ++ SK LYVA AQ+KEER+ LQ + R
Sbjct: 267 FQNPESAIKAQETMHGMLLGSKALYVARAQKKEERKQYLQRLHEEKR 313
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/347 (55%), Positives = 255/347 (73%), Gaps = 4/347 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 108 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 167
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 168 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 226
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S V+ D GKSK FGFV+FE
Sbjct: 227 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERH 286
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 287 EDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 346
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 347 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 405
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
KPLYVA+AQRKEER+A L Q+ Q P P P PSG
Sbjct: 406 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 452
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 68/103 (66%), Gaps = 7/103 (6%)
Query: 466 PRRDASVGQPMPITAL-------STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
PR A +P P + ++ LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 480 PRWTAQGARPQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 539
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
MLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A
Sbjct: 540 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 582
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 245/576 (42%), Positives = 339/576 (58%), Gaps = 74/576 (12%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG IL
Sbjct: 107 KAIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 166
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 167 SCKVAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEE 226
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D + ++E +K+F YG ITS + +D DGKSK FGFVNFEN D A
Sbjct: 227 MKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAV 286
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E A E + K+QG+NL++KNL D+I
Sbjct: 287 KAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAI 346
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FGTITS KVM D +G SKG GFV F+TPEEA++A+ EMN +MI KPLY
Sbjct: 347 DSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLY 406
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YGQAPPA 362
VA+AQRK+ RR++L+ Q Q R +M M GL QF+ YGQ
Sbjct: 407 VALAQRKDVRRSQLEQQI-QAR---------NQMRMQNAAAGGLPGQFMPPMFYGQQ--G 454
Query: 363 IIPPQAGFGYQQQLVPG------MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT 416
PP G PG MR G P P +Q RPG
Sbjct: 455 FFPPN---GRGNAPYPGPNPQMMMRGRGQPFP----------EQWPRPG---------PN 492
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM---GAGIPRRDASVG 473
QP+P+ + +PP+ F D +M P G P R+ +
Sbjct: 493 GQPVPV--YGIPPQ--------------FQQDFNGQNMRPQQQQQQPRGGYYPNRNQTNK 536
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVL 529
+ L+ +++ +QQ+ +LGE LYP + + E +AA K+TGM+L ++ E+L
Sbjct: 537 RD-----LAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEIL 591
Query: 530 HLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
LL+ E +A+ + +A A++ A
Sbjct: 592 DLLDDDELFNNHFEDALTAFEEYKKSEAAGNAEEQA 627
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 177
+++ E+ + +++V L+ S + L +IF G ++S V RD KS + +V
Sbjct: 38 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 97
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 98 NYHKYEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDG----------------NI 141
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+IKNL +ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG
Sbjct: 142 FIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFGFVHYETAEAAEAAIENVNG 201
Query: 298 KMIVSKPLYVAVAQRKEERRARLQ 321
++ + ++V K++R ++ +
Sbjct: 202 MLLNDREVFVGKHISKKDRESKFE 225
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 246/575 (42%), Positives = 341/575 (59%), Gaps = 70/575 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+SHRDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILS K+ + G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF +Q+RE
Sbjct: 123 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A F N++VKNL + ++ L+ +F ++G + S VMRD +G+S+ FGFVNFE
Sbjct: 182 ELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG+NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI+DE+LKE+FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSINDERLKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMPMYPPGPSGLGQQFLYG--- 357
KPLYVA+AQRKEER+A L Q+ + RP + P + P P Q Y
Sbjct: 361 KPLYVALAQRKEERKAILTNQYRR-RPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSGS 419
Query: 358 --------------QAPPAIIPPQAG----FGYQQQLVPGMRPAGAPMPNFFVP----VV 395
PP+ PP A Q P + +GA + VP VV
Sbjct: 420 ITPMQPDPRWTAQPHGPPSTCPPAASVVQPLSTTQH--PCIHLSGASQVSSQVPHTQRVV 477
Query: 396 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 455
+ G Q PGG + P Q ++PH RG +
Sbjct: 478 NIGTQTTGPGGEGSSIPGQL------LVPH----RGTS---------------------- 505
Query: 456 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
V G+ V P+T + LA A +Q+ ++GE LY L+ K
Sbjct: 506 --AVHSAHGVQESAVYVPGHQPLTV--SMLAAAPLHEQKQMIGERLYSLIHDACAPLTGK 561
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
+TGMLLE+D E+L LLESPE+L AK+ EA+ VL+
Sbjct: 562 ITGMLLELDNLELLLLLESPESLHAKIEEAVAVLQ 596
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS GNILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + R+ K+ N+F+KNL+ S ++ L F +G+I S
Sbjct: 72 MNFEVIKGQPIRI----MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ V+ + G S+ FGFV+FE + A KA+ +NG +DR+ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGA- 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+A+ T N+Y+KNL ++D+++L++LFS+FG + S KVMRD +G S+G GFV
Sbjct: 186 --RALGFT-------NIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+ MNGK + + LYV AQ++ ER++ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMK 284
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/447 (46%), Positives = 294/447 (65%), Gaps = 44/447 (9%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHK-------- 55
++ RAL+ LN++ + ++ RIM+S RDP++RK+G GNIFIKNLD+ ID+K
Sbjct: 95 VTDGERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTP 154
Query: 56 --ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
ALHDTF++FGN+LSCK+ATD G+S+G+G+V +E E+A++AI +NGML+NDK+V+V
Sbjct: 155 PHALHDTFAAFGNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYV 214
Query: 114 GHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS 171
G+ + ++ER++ ++ F N++VKNLD T + ++F ++G +TSAV+ D +GKS
Sbjct: 215 GYHISRKERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKS 274
Query: 172 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 231
K FGFVNFEN + AAKAV+ L+ F+ ++ +V +AQKK+ERE+EL+ +E A E + K
Sbjct: 275 KGFGFVNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSK 334
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 291
+QG+NLYIKNL D +DDEKL+ F FGTITSCKVMRD G SKG GFV FS+P+EA++A
Sbjct: 335 YQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKA 394
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP-MYPPGP--- 347
+AEMN KMI SKPLYV++AQR+E RR +L++Q +Q + M + +P Y GP
Sbjct: 395 VAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGLPGGYINGPMYY 454
Query: 348 ----------SGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGM---RPAGAP------MP 388
+G G + G P ++PP+ + QQ VPGM P G P MP
Sbjct: 455 PPGPGAYPPQAGRG---MMGYGQPGMLPPRPRYAPNQQ-VPGMPVPSPYGQPPQGYGGMP 510
Query: 389 NF----FVPVVSQGQQGQRPGGRRGAG 411
+ P V G GQ PG R G
Sbjct: 511 GYPRGGPRPPVRDGPPGQ-PGAPRANG 536
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 30/208 (14%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V LD + T+ L +IF G + S V RD +S + +VN+ N D +A+E L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE--- 249
N R + +Q+ + A+++T QG N++IKNL + ID++
Sbjct: 106 NYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDELIDNKVRT 149
Query: 250 -------KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
L + F+ FG + SCKV D G S+G G+V + T E A A+ +NG ++
Sbjct: 150 AQKTPPHALHDTFAAFGNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLND 209
Query: 303 KPLYVAVAQRKEERRARLQ---AQFSQM 327
K +YV ++ER+++L+ A F+ +
Sbjct: 210 KKVYVGYHISRKERQSKLEEMRAHFTNL 237
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 325/561 (57%), Gaps = 77/561 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
++ RAL+ LN+ + R+M+S RDPS+R+SG+GNIFIKNLD +I++K LHDTFSSF
Sbjct: 104 AAGERALEELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSF 163
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G +LSCK+ATD +G SKGFGFV +E+ E+AQ AI+ +NGML+N ++++VG L K++RE+
Sbjct: 164 GKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRES 223
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ + NVFVKN D +T+++L+++F YG ITS + D +G +K FGFVNF
Sbjct: 224 RFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEH 283
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DDA KAVEALN K++ + YVG+AQKK+ER EL ++E E + K+Q +NL+IKNL
Sbjct: 284 DDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNL 343
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+SIDD +L+E F FGTITS KVM D +G S+G GFV STPEEA++A++EMN +M+ +
Sbjct: 344 DESIDDARLEEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVAN 403
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP- 361
KPLYVA+AQ K RR++L Q + M P +P P GQQ G PP
Sbjct: 404 KPLYVALAQPKAIRRSQLAQQIQARNQMRMQQQAGPGIPNQFVQPIFYGQQ--PGMLPPG 461
Query: 362 AIIPPQ-------AGF----GYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 410
A +PP AG + Q P M P G PMP + PV + G
Sbjct: 462 ARVPPMGNQIPQFAGMPRPGPFPQGQFPRMAPNGQPMPVYGQPVFN------------GN 509
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
GP Q RG+ YP R ++ S+ A
Sbjct: 510 GPQQ---------------RGY---YPNNRQNKNRNQKEEGNSL---------------A 536
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER----DAAAKVTGMLLEMDQT 526
++ +P+ EQQ+ +LGE LYP V + +AA K+TGM+L++D
Sbjct: 537 AILPQLPL------------EQQKRVLGEELYPKVVATNKTQDPEAAGKITGMILDLDNQ 584
Query: 527 EVLHLLESPEALKAKVAEAME 547
E+L LLE E EA++
Sbjct: 585 EILQLLEDEELFNTHFNEALQ 605
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 156/289 (53%), Gaps = 15/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ LD ++ L++ FS G++ S ++ D + +S G+G+V F ++ + + A++
Sbjct: 52 ASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALE 111
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+LN I V L +R+ ++ N+F+KNLD + ++ L F +G +
Sbjct: 112 ELNYAEIKG----VRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVL 167
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D +G SK FGFV++E+ + A A+E +NG + RE YVG K +RE
Sbjct: 168 SCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRE----S 223
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+F++ +K N+++KN +++L+ELF +G ITS + D G +KG GF
Sbjct: 224 RFQEMIKNYT------NVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGF 277
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V F+ ++A +A+ +N K KPLYV AQ+K ER L ++ R
Sbjct: 278 VNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADR 326
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/347 (55%), Positives = 255/347 (73%), Gaps = 4/347 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
KPLYVA+AQRKEER+A L Q+ Q P P P PSG
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 407
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/412 (50%), Positives = 293/412 (71%), Gaps = 9/412 (2%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RAL+ LN++ + +S RIM+S RDPS+RK GNIFIKNLD SIDHKALHDTFS+
Sbjct: 79 MADAERALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSA 138
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCKIA D G SKG+GFV +E E+A++AI +NGML+ND++VFVGH + ++ERE
Sbjct: 139 FGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERE 198
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ + +F N++VKN+ TDE+L ++FG+YGTITS V+ RD DG SK FGFVNFE
Sbjct: 199 SKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEK 258
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
DA AV+ L+ K F ++ YV +AQKK+ERE+EL+ Q+E+A E + K+QG+NLY+KN
Sbjct: 259 HQDAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKN 318
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
L D +DD++L++ FS +G ITS K+MRD + IS+G GFV F++PE+A+RA+ EMNG++I
Sbjct: 319 LDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRII 378
Query: 301 VSKPLYVAVAQRKEERRARLQ---AQFSQMRPVAMGPSV-PPRMPMYPPGPSGLGQQFLY 356
SKP+YVA+AQRKE RR++L+ AQ +Q++ M PSV PP M P G + + ++
Sbjct: 379 GSKPIYVAIAQRKEVRRSQLEIQMAQRNQLKQAMMPPSVFPPTMYGPPAGMAAAASRSVF 438
Query: 357 GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR 408
AP P Q G+ Q+L P +PA P + P+++Q + P +R
Sbjct: 439 QGAPMPSFPAQ-GYPATQRLSPPPQPA-KPAESAVRPLIAQDLENFPPETQR 488
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L E+F+ G ++S +V RD + S G +V F +A RAL
Sbjct: 29 SLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAERALET 88
Query: 295 MNGKMIVSKPLYVAVAQR 312
+N MI + + +QR
Sbjct: 89 LNYSMIKGRSCRIMWSQR 106
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/433 (50%), Positives = 287/433 (66%), Gaps = 37/433 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 80 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 139
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 140 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 198
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E D +LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 199 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 258
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 259 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 318
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL+ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 319 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 377
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P S + QF
Sbjct: 378 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---------ASAILNQF-------- 418
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ------GQQGQRPGGRRGAGPVQQ 415
P AG GY VP + P P ++ P ++Q QQG RP G +G +
Sbjct: 419 --QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALR 471
Query: 416 TQQPLPIMPHQMP 428
P P + H P
Sbjct: 472 QSGPRPALRHLAP 484
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 89 MNFDVMKGKPIRIMWSQR 106
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 247/575 (42%), Positives = 340/575 (59%), Gaps = 70/575 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+SHRDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILS K+ + G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF +Q+RE
Sbjct: 123 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A F N++VKNL + ++ L+ +F ++G + S VMRD +G+S+ FGFVNFE
Sbjct: 182 ELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG+NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI+DE+LKE+FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSINDERLKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMPMYPPGPSGLGQQFLYG--- 357
KPLYVA+AQRKEER+A L Q+ + RP + P + P P Q Y
Sbjct: 361 KPLYVALAQRKEERKAILTNQYRR-RPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSGS 419
Query: 358 --------------QAPPAIIPPQAGFGYQQQLVPGMRPA----GAPMPNFFVP----VV 395
PP+ PP A Q L P GA + VP VV
Sbjct: 420 ITPMQPDPRWTAQPHGPPSTCPPAASV--VQPLSTTQHPCIHLRGASQVSSQVPHTQRVV 477
Query: 396 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 455
+ G Q PGG + P Q ++PH RG +
Sbjct: 478 NIGTQTTGPGGEGSSIPGQL------LVPH----RGTS---------------------- 505
Query: 456 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
V G+ V P+T + LA A +Q+ ++GE LY L+ K
Sbjct: 506 --AVHSAHGVQESAVYVPGHQPLTV--SMLAAAPLHEQKQMIGERLYSLIHDACAPLTGK 561
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
+TGMLLE+D E+L LLESPE+L AK+ EA+ VL+
Sbjct: 562 ITGMLLELDNLELLLLLESPESLHAKIEEAVAVLQ 596
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS GNILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + R+ K+ N+F+KNL+ S ++ L F +G+I S
Sbjct: 72 MNFEVIKGQPIRI----MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ V+ + G S+ FGFV+FE + A KA+ +NG +DR+ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGA- 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+A+ T N+Y+KNL ++D+++L++LFS+FG + S KVMRD +G S+G GFV
Sbjct: 186 --RALGFT-------NIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+ MNGK + + LYV AQ++ ER++ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMK 284
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/431 (50%), Positives = 290/431 (67%), Gaps = 24/431 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 54 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 114 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 172
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN E D++LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 173 ELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 232
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 233 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 292
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 293 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 351
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ VA ++P + P+ G F+ PA
Sbjct: 352 KPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAILSQFQPAA-GGYFV-----PA 403
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
+ PQA G P P P + QQG RP G +G + P P
Sbjct: 404 V--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQGGRPQGFQGMPSAIRQSGPRPA 452
Query: 423 MPHQMPPRGHA 433
+ H + P G+A
Sbjct: 453 LRH-LAPTGNA 462
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 63 MNFDVIKGKPIRIMWSQR 80
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/360 (53%), Positives = 259/360 (71%), Gaps = 10/360 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + DE LK++FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ + GK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PPA
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPA 414
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 172/297 (57%), Gaps = 16/297 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN GD ++DE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
+G SKG GFV+F E+A +A+ EM GK + K ++V AQ+K ER+ L+ +F QM
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQM 283
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 245/646 (37%), Positives = 341/646 (52%), Gaps = 130/646 (20%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+AQ AI +NGML+N+K+V+VGH + K++R++
Sbjct: 171 SCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+ TD+ + +F +G +TS+ + RD DGKS+ FGFVNF + A+
Sbjct: 231 MKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAAS 290
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE LN K F +E YVG+AQKK ERE+EL+ +E A E K+QG+NLYIKNL D +
Sbjct: 291 AAVEELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDV 350
Query: 247 DDEKLKELFSEFGTITSCKVMRD-PSGISKGSG--------------------------- 278
DDEKL+ +F+EFG ITS KVMRD PS G
Sbjct: 351 DDEKLRTMFTEFGPITSAKVMRDSPSDDEDEEGKEAEAEDKDKENKKADAEAEAAEAAEE 410
Query: 279 -----------------------FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FV FS P++A++A+AEMN +MI KPLYVA+AQRK+
Sbjct: 411 ENSDKEKKERKGSKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDV 470
Query: 316 RRARLQAQF---SQMRPVAMGPSVPPRMP-MYPPGPSGLGQQFLYGQAPPAIIP------ 365
R+++L+A +QMR + P M PP Y P +P
Sbjct: 471 RKSQLEASIQARNQMRMQQAAAAAGMSQPFMQPP--------VFYAGQQPGFVPQGGRGI 522
Query: 366 --PQAGFGYQQQLVPGMRPAGAP--------------------MPNFFVPVVSQGQQGQR 403
PQ G G + G+RP P MPN F P Q
Sbjct: 523 PFPQPGMG-----MTGVRPGQFPGYPQQGGRGGPQQIPPNMYNMPNQFPPQFGQ------ 571
Query: 404 PGGRRGAGPVQQTQQPLPIMPHQ-------MPPRGHAYRYPLGRNMQDFPFDMGAGSMLP 456
PG + +QQ Q MPP P R MG G
Sbjct: 572 PGTPQFMAAMQQAALGGGRGGPQGGRGNAGMPPNAVPGFPPNNRQA------MGRGGNR- 624
Query: 457 VPVDMGAGIPRRDASVGQPMPI------TALSTALANASPEQQRTLLGESLYPLVEQLER 510
AG + + P+ +AL T ++ A P QQ+ +LGE ++P ++ +
Sbjct: 625 ------AGNNTNNVNSANIQPVRASDNGSALQTQISGAPPAQQKQMLGEMIFPKIQAING 678
Query: 511 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 556
+ A K+TGMLLEMD +E+++L+E ALK+KV EA+ V + Q
Sbjct: 679 ELAGKITGMLLEMDNSELINLIEDDAALKSKVDEALAVYDEYVKTQ 724
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 154/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 114 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 169
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A +A++ +NG ++++ YVG K +R+ +
Sbjct: 170 LSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 229
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ + D++ + LF G +TS + RDP G S+
Sbjct: 230 EMKANF-------------TNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSR 276
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E AS A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 277 GFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKSYEAAR 329
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 243/627 (38%), Positives = 349/627 (55%), Gaps = 94/627 (14%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 234
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ T++D +++F ++G +TS+ + RD +GKS+ FGFVNF + A+
Sbjct: 235 MKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESAS 294
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D +
Sbjct: 295 KAVDDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDV 354
Query: 247 DDEKLKELFSEFGTITSCKVMRD-PS---------------------------------- 271
DD+KL+++FSEFG ITS KVMR+ P+
Sbjct: 355 DDDKLRQMFSEFGPITSAKVMRETPTEGDEDKKEETQDDKEKENKEEAKEEANEETKEGE 414
Query: 272 ----------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
G SKG GFV FS P++A++A+AEMN +MI +KPLYVA+AQRK+
Sbjct: 415 EAKDDKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDV 474
Query: 316 RRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ 375
R+++L+A + M + +G+ QQ++ PP P G Q
Sbjct: 475 RKSQLEASIQARNQLRMQQAAA---------AAGMPQQYM---QPPVYFAP----GQQPG 518
Query: 376 LVP-GMRPAGAPMPNFFVPVVSQGQQGQRPG----GRRGAGPVQQTQQPLPIMPHQMPPR 430
+P G R P P +P V G+ GQ PG G RG P QQ + MP Q PP+
Sbjct: 519 FMPQGGRGVPFPQPGMGMPGVQGGRPGQFPGYPQQGGRGGVP-QQMPPNMYGMPGQFPPQ 577
Query: 431 GHAYRYPLGRNMQDFPFDMGAGSMLPV-----PVDMGAGIPRRDASVGQP----MPITAL 481
P G P P +M G P G P
Sbjct: 578 FGQPGTPQFMAAMQAQQAALGGRGAPQGGRGGPQNMPGGPPMAGGMAGFPPNNRQQGGRG 637
Query: 482 STALANASPE----------QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 531
+P+ Q+ +LGE ++P ++ + + A K+TGMLLEMD E+++L
Sbjct: 638 GPGRNGNAPQGGRGAEGAGPNQKQILGELIFPKIQAINGELAGKITGMLLEMDNAELVNL 697
Query: 532 LESPEALKAKVAEAMEVLRSVAQQQAN 558
+E ALKAKV EA+ V + Q +
Sbjct: 698 IEDDAALKAKVDEALAVYDEYVKAQGS 724
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 157/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 117
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ K NVF+KNLD + ++ L F +G I
Sbjct: 118 EELNYTLIKGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 174 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 233
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + ++ +ELF +FG +TS + RD G S+
Sbjct: 234 EMKANF-------------TNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSR 280
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E AS+A+ ++NGK + LYV AQ+K ER L+ + R
Sbjct: 281 GFGFVNFTTHESASKAVDDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 237/556 (42%), Positives = 332/556 (59%), Gaps = 61/556 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ +RA++ LN++ ++ + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTFS+F
Sbjct: 110 ADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAF 169
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 170 GRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRES 229
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F NV+VKNL + ++IF +G +TS + D +GKS+ FGFVNFEN
Sbjct: 230 KFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENH 289
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A AV+ +N K+ D ++ YVG+AQKK ER ELK +E E + K+QG+NL++KNL
Sbjct: 290 ESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNL 349
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSID EKL+E F FGTITS +VM D +G SKG GFV FS+PEEA++A+ EMN +MI
Sbjct: 350 DDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQG 409
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YGQ 358
KPLYVA+AQRK+ RR++L+ Q + M + +G+ QF+ YGQ
Sbjct: 410 KPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA---------AAAGMPGQFMSPMFYGQ 460
Query: 359 APPAIIPPQAGFGYQQQLVPG---MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
P PP G Q P M P G MP QGQ P AGP
Sbjct: 461 Q-PGFFPPNGRGGAQGPFPPNPQMMMPRGGQMP---------PPQGQWP----RAGP--- 503
Query: 416 TQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ 474
QP+P+ + MPP G + P G+ Q GA P R+ G+
Sbjct: 504 NGQPVPV--YGMPPVYGGEFNGPNGQRQQ-----------------RGAYPPNRNQKGGR 544
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLH 530
P L+ ++ +QQ+ +LGE LYP + + E +AA K+TGM+L+++ E+L
Sbjct: 545 PQ--RDLAAIISTVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILA 602
Query: 531 LLESPEALKAKVAEAM 546
LLE E + +A+
Sbjct: 603 LLEDDELFENHFEDAL 618
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V L+ S + L +IF G ++S V RD KS + +VNF D ++A+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N D R + +Q+ + G N++IKNL +ID++ L
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKALH 163
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 164 DTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 313 KEERRAR---LQAQFSQMRPVAMGPSV 336
K +R ++ ++A F+ + + P V
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEV 250
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 237/559 (42%), Positives = 332/559 (59%), Gaps = 76/559 (13%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN++ + + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTF++FG IL
Sbjct: 107 KAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKIL 166
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G SK FGFV +E E+A+ AI+ +NGML+ND++V+VG + K++RE+
Sbjct: 167 SCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEE 226
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+ KN+D ++E+ KK+F YG ITS + +D +GKSK FGFVNFEN + A
Sbjct: 227 MKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAV 286
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL+IKNL D+I
Sbjct: 287 KAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTI 346
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FG+ITS +VM D +G SKG GFV FS+PEEA++A+ EMN +MI KPLY
Sbjct: 347 DSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLY 406
Query: 307 VAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
VA+AQRK+ RR++L+ Q +M+ A +P + PP YGQ P
Sbjct: 407 VALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQ--FIPP--------MFYGQQ-P 455
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ----QGQRPGGRRGAGPVQQTQ 417
PP G P P P +P +GQ QGQ P GP
Sbjct: 456 GFFPPNG---------RGNGPFPGPNPQMMMP---RGQIPPPQGQWP----RPGP---NG 496
Query: 418 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG------SMLPVPVDMGAGIPRRDAS 471
QP+P+ + MPP + F+ GA P G ++D
Sbjct: 497 QPVPV--YGMPP------------VYGGDFNNGANGGRQQRGYYPNRNQNQKGRQQKD-- 540
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTE 527
L+ +ANA +QQ+ +LGE LYP + + E +AA K+TGM+L++D E
Sbjct: 541 ---------LAAIIANAPADQQKRILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNEE 591
Query: 528 VLHLLESPEALKAKVAEAM 546
+L LLE E +A+
Sbjct: 592 ILALLEDDELFNTHFEDAL 610
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ S + L +IF G + S V RD KS + +VNF +D KA+E
Sbjct: 52 SLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIED 111
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 112 LNYSLIEGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKAL 155
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D GISK GFV + T E A A+ +NG ++ + +YV
Sbjct: 156 HDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHI 215
Query: 312 RKEERRARLQ 321
K++R ++ +
Sbjct: 216 SKKDRESKFE 225
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP- 270
E EQ G+ E+A +LY+ L S+++ L E+FS G + S +V RD
Sbjct: 28 ETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAV 87
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ S G +V F E+ +A+ ++N +I +P + +QR
Sbjct: 88 TKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQR 129
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 239/555 (43%), Positives = 330/555 (59%), Gaps = 25/555 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++V N + LN K+IR+M+S RDP RKS GN+F+KNL +SID+ L D F FGN
Sbjct: 64 AIRAIEVKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGN 123
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ G+SKG+GFVQFE +ESA AI++LNG L+ DKQ++VG F++K +R +
Sbjct: 124 ILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSG 183
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
T++ N+++KNLD ++ L++ F +G I S V +D +G SK FGFVNF+N +DA
Sbjct: 184 PDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAK 243
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+A+E +NG + + YV +AQKK+EREQ L QFE+ KE V K++G N+Y+KN+ D++
Sbjct: 244 RAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNV 303
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DE L++ FS GTITS K+MRD GISKG GFV FSTPEEA++A+ +G M KPLY
Sbjct: 304 SDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLY 363
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLY-GQAPPAIIP 365
V++AQRKE+R+A+LQ Q++Q GPS YPP F Y + P
Sbjct: 364 VSLAQRKEDRQAQLQLQYAQQIAGLAGPSTAIVPGGYPP--------FYYTATGVVSHAP 415
Query: 366 PQAGFGYQ-QQLVPGMRPAG-APMPNFF----VPVVSQG--QQGQRPGGRRGAGPVQQTQ 417
P+AG YQ L PG R G AP F PVVS +Q ++ GR V Q
Sbjct: 416 PRAGLVYQPMALRPGWRANGSAPPARSFQQSPTPVVSNNNTRQHRQNRGRMNGHAVSQGN 475
Query: 418 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
MP A + + G +P +S G +
Sbjct: 476 THSGTY---MPQAQQASQSAISSRESSTQQRTGQAKYVPSGRHREMEKGSGLSSSGGSLG 532
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT-EVLHLLESPE 536
L + LANA+PEQQ+ +LGE LY LV++++ + AAK+TGMLLEMD E +L++
Sbjct: 533 PEVLHSMLANATPEQQKEILGEHLYMLVQKIKPNLAAKITGMLLEMDNVEEAFQVLKNS- 591
Query: 537 ALKAKVAEAMEVLRS 551
KAKV+ +VL S
Sbjct: 592 --KAKVS-GQDVLHS 603
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 158/288 (54%), Gaps = 17/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDK 100
++++ +L + LHD FS F + S +I D S G+S +G+V F + A AI+
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
N +N K + V R+ A K+ NVFVKNL ES + L+ +F ++G I S
Sbjct: 71 KNHSTLNGKAIRV----MWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILS 126
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ V+ DGKSK +GFV FE + A A+E LNG D++ YVGK KKS+R
Sbjct: 127 SKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDR------- 179
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ D + NLY+KNL I + L+E FS FG I S V +D +G+SKG GFV
Sbjct: 180 ----ISSGPDT-RYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFV 234
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F PE+A RA+ MNG + SK LYVA AQ+K ER L QF + R
Sbjct: 235 NFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKR 282
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/358 (54%), Positives = 262/358 (73%), Gaps = 14/358 (3%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 360
KPLYVA+AQRKEER+A L Q+ M+ +A +V P P+ + L+G P
Sbjct: 361 KPLYVALAQRKEERQAHLTNQY--MQRMASVRAV--------PNPASTSFRLLHGSYP 408
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 231/538 (42%), Positives = 321/538 (59%), Gaps = 62/538 (11%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A+D LN++ + + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG IL
Sbjct: 119 KAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRIL 178
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 179 SCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEE 238
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K + N++VKN+D T+++ +++F YG ITS + +D DGKSK FGFVN+E A
Sbjct: 239 MKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAV 298
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVEALN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL+IKNL D I
Sbjct: 299 DAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQI 358
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FGTITS KVM D +G SKG GFV FSTPEEA++A+ EMN +MI KPLY
Sbjct: 359 DSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLY 418
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR++L+ Q + M + G QF+ PP
Sbjct: 419 VALAQRKDVRRSQLEQQIQARNQMRMQNAA---------AAGGFPGQFM----PPMY--- 462
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVP----VVSQGQQGQ-------RPGGRRGAGPVQQ 415
+G Q PG R AP P P ++ +GQ GQ RPG
Sbjct: 463 ---YGQQGFFPPGGRGNAAPFPG---PNPQMMMRRGQPGQPFPEQWPRPG---------P 507
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP-VPVDMGAGIPRRDASVGQ 474
QP+P+ + +PP+ R + Q P P G +P ++
Sbjct: 508 NGQPVPV--YGIPPQFQDQRAQQQQQQQQQPQQPQQQQQRGYYPGQAGVKVPAKE----- 560
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEV 528
L+ +++ PEQQ+ +LGE LYP + + E +AA K+TGM+L ++ E+
Sbjct: 561 ------LAAIISSVPPEQQKRILGEELYPRIVATGKAQEPEAAGKITGMMLGLENQEI 612
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 15/290 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ L+ S++ L + FS G + S ++ D + +S G+ +V + E + AI
Sbjct: 62 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAI 121
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D+LN L+ + + +R+ A ++ N+F+KNL + ++ L F +G I
Sbjct: 122 DELNYSLVEGRPCRI----MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRI 177
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SKCFGFV++E + A A+E +NG +DRE +VGK K +RE
Sbjct: 178 LSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRE---- 233
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+FE+ K N+Y+KN+ +++ +ELF+ +G ITS + +D G SKG G
Sbjct: 234 SKFEEM------KANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFG 287
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV + + A A+ +N K I + +YV AQ+K ER L+ Q+ +R
Sbjct: 288 FVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIR 337
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/392 (52%), Positives = 268/392 (68%), Gaps = 33/392 (8%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
A++ LN+T + + RIM+S RDPS+RK G+GNIFIKNL ID+K L++TFS FGNILS
Sbjct: 100 AIEKLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILS 159
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AI 127
CKIA D +G+SKGFGFV FEN+E+A+ AID +NGML+N ++V+V + K++R++
Sbjct: 160 CKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEA 219
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
+ F NV+VKNLD T+ED + +F YGTITS + +D +GKS+ FGFV+FEN +DA K
Sbjct: 220 RANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVK 279
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
AVEALN ++ + YVG+AQKK ER QELK Q++ + E + K+QG+NL+IKNL DSID
Sbjct: 280 AVEALNDTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSID 339
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
DEKLKE F+ FGTITS +VMR +G SKG GFV FSTPEEA+RA+ E N +++ KPLYV
Sbjct: 340 DEKLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYV 399
Query: 308 AVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MPM 342
A+AQRK+ RR++L Q +QMR P+ G VPPR MP
Sbjct: 400 AIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPPMFYG-VVPPRGMPF 458
Query: 343 YPPGPSGLG----QQFLYGQAPPAIIPPQAGF 370
P P LG QQF G A + PPQ GF
Sbjct: 459 NGPNPQQLGGMPPQQFRNGPA-YGMPPPQGGF 489
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
P+ +PPRG + P + + P F G +P P G PR D Q
Sbjct: 445 PMFYGVVPPRGMPFNGPNPQQLGGMPPQQFRNGPAYGMPPP---QGGFPRNDNQFYQ--- 498
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESP 535
++QR LGE LY V D AA K+TGM+L++ EV+ LLE+
Sbjct: 499 -------------QKQRQALGEQLYKKVSAKTSDEEAAGKITGMILDLPAQEVVPLLEND 545
Query: 536 EALKAKVAEAMEVLRS 551
E + EA S
Sbjct: 546 ELFEQHFNEAFAAYES 561
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L ++FS G+++S +V RD + S G +V F+ E A+ +
Sbjct: 44 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEK 103
Query: 295 MNGKMIVSKPLYVAVAQRKEERRAR 319
+N I +P + +QR R +
Sbjct: 104 LNYTAIKGRPCRIMWSQRDPSMRKK 128
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 248/582 (42%), Positives = 345/582 (59%), Gaps = 82/582 (14%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+SHRDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 126 ADAERALDTMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTF 185
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILS K+ + G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF +Q+RE
Sbjct: 186 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREA 244
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A F NV+VKNL ++ L+ +F ++G + S VMRD +G+S+ FGFVNFE
Sbjct: 245 ELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKH 304
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG+NLY+KNL
Sbjct: 305 EEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNL 364
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI+DE+LKE+FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 365 DDSINDERLKEVFSAYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 423
Query: 303 KPLYVAVAQRKEERRARLQAQFSQM--RPV----------------------------AM 332
KPLYVA+AQRKEER+A L Q+ + RPV +M
Sbjct: 424 KPLYVALAQRKEERKAILTNQYRRQLSRPVLSSFQQPTNYLLSAVSQSTAQAVYYGSGSM 483
Query: 333 GPSVP-PRMPMYPPGPSGLGQQFLYGQAPPA--IIPPQAGFGYQQQLVPGMRPAGAPMPN 389
P P PR + P GPS PPA ++ P + + + A + +P+
Sbjct: 484 APMQPDPRWAVQPHGPSST--------CPPAASVVQPLGTMQHPRVHLNNASQASSQVPH 535
Query: 390 FFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDM 449
VV+ G Q GG + P Q P++ H RG +
Sbjct: 536 -TQRVVNIGTQTTGSGGEGCSIPGQ------PLLTH----RGSS---------------- 568
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
V G+ V P+T + LA A +Q+ ++GE LY L++
Sbjct: 569 --------AVHSAHGVQEPAVYVPGHQPLTV--SMLAAAPLHEQKQMIGERLYSLIQDTC 618
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
K+TGMLLEMD E+L LLESPE+L AK+ EA+ VLR+
Sbjct: 619 APLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLRA 660
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 90
DP + ++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+
Sbjct: 65 DPGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 124
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + + + R+ K+ N+F+KNL+ S ++ L
Sbjct: 125 PADAERALDTMNFEMIKGQPIRI----MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYD 180
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G+I S+ V+ + G S+ FGFV+FE + A KA+ +NG +DR+ +VG + +
Sbjct: 181 TFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 239
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+RE EL +A+ T N+Y+KNL +D++ L++LFS+FG + S KVMRD
Sbjct: 240 QKREAELGA---RALGFT-------NVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDS 289
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G S+G GFV F EEA +A+ MNGK + + LYV AQ++ ER++ L+ +F Q++
Sbjct: 290 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVK 347
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 238/559 (42%), Positives = 334/559 (59%), Gaps = 67/559 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ +RA++ LN++ ++ + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTFS+F
Sbjct: 110 ADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAF 169
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 170 GRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRES 229
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F NV+VKNL + ++IF +G +TS + D +GKS+ FGFVNFEN
Sbjct: 230 KFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENH 289
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A AV+ +N K+ D ++ YVG+AQKK ER ELK +E E + K+QG+NL++KNL
Sbjct: 290 ESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNL 349
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSID EKL+E F FGTITS +VM D +G SKG GFV FS+PEEA++A+ EMN +MI
Sbjct: 350 DDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQG 409
Query: 303 KPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPR--MPMYPPGPSGLGQQFL 355
KPLYVA+AQRK+ RR++L+ Q +M+ A +P + +PM+
Sbjct: 410 KPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAAGMPGQFMLPMF------------ 457
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPG---MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGP 412
YGQ P PP G Q P M P G MP QGQ P AGP
Sbjct: 458 YGQQ-PGFFPPNGRGGAQGPFPPNPQMMMPRGGQMP---------PPQGQWP----RAGP 503
Query: 413 VQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS 471
QP+P+ + MPP G + P G+ Q GA P R+
Sbjct: 504 ---NGQPVPV--YGMPPVYGGEFNGPNGQRQQ-----------------RGAYPPNRNQK 541
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTE 527
G+P L+ ++ +QQ+ +LGE LYP + + E +AA K+TGM+L+++ E
Sbjct: 542 GGRPQ--RDLAAIISTVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEE 599
Query: 528 VLHLLESPEALKAKVAEAM 546
+L LLE E + +A+
Sbjct: 600 ILALLEDDELFENHFEDAL 618
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V L+ S + L +IF G ++S V RD KS + +VNF D ++A+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N D R + +Q+ + G N++IKNL +ID++ L
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKALH 163
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 164 DTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 313 KEERRAR---LQAQFSQMRPVAMGPSV 336
K +R ++ ++A F+ + + P V
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEV 250
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/403 (49%), Positives = 276/403 (68%), Gaps = 35/403 (8%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+T + K RIM+S RDPS+RK G+GNI+IKNL +ID+K+LH+TFS+FGNIL
Sbjct: 94 KAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD +G S+GFGFV FEN+ A++AI+ ++GML+ND++V+V + K++R++
Sbjct: 154 SCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEE 213
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K KF NV+VKN+D+ T+ E+ +++FG+YG ITSAV+ +D +GK + FGFVNFE+ AA
Sbjct: 214 VKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAA 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN +F ++ YVG+AQKK ER QELK Q+E A E + K+QG+NL++KNL DSI
Sbjct: 274 KAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSI 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLKE F+ FGTITS KVMRD +G S+G GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR----------------------PVAMGPSVPPRMP 341
VA+AQRKE RR +L Q +QMR P+ G +PPR+P
Sbjct: 394 VAIAQRKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPPMYYG-GIPPRVP 452
Query: 342 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG 384
P P + G +PPQ FG + G P G
Sbjct: 453 FQGPNPQ------MAGMPKNGAMPPQQ-FGRPGPMYGGFAPQG 488
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 179
E ET ++T +++V L+ + ++ L IF G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ + KA+E LN + + +Q+ ++ G N+YI
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG----------------NIYI 130
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL +ID++ L E FS FG I SCKV D +G+S+G GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 300 IVSKPLYVAVAQRKEERRARLQ 321
+ + +YVA+ K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/326 (53%), Positives = 249/326 (76%), Gaps = 2/326 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + + RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF +FGN+L
Sbjct: 101 RALEQLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVL 160
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G+SKG+GFV +E E+A+ AI +NGML+NDK+V+VG + ++ER++
Sbjct: 161 SCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDE 220
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K +F N+++KNLD T E+ +++F YG++TSA+V D +G+SK FGFVN+E+ ++A
Sbjct: 221 MKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQ 280
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ L+ ++ YV +AQKK+ERE+EL+ +EQA E + K+QG+NLY+KNL D +
Sbjct: 281 AAVDNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDV 340
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ F FGTITSCKVM D G SKG GFV FS+P+EA++A+AEMN KMI SKPLY
Sbjct: 341 DDDKLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLY 400
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAM 332
V++AQR+E RR +L++Q +Q + M
Sbjct: 401 VSLAQRREVRRQQLESQIAQRNQIRM 426
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ + +IF G + S V RD +S + +VN+ N D +A+E
Sbjct: 46 SLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQ 105
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 106 LNYSLIKGRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 149
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 150 HDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHI 209
Query: 312 RKEERRARL---QAQFSQM 327
++ER+++L +AQF+ +
Sbjct: 210 PRKERQSKLDEMKAQFTNL 228
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 232/531 (43%), Positives = 325/531 (61%), Gaps = 43/531 (8%)
Query: 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
ID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++V
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 112 FVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
FVG F ++ERE A +F NV++KN E DE LK++FG++G S VM D G
Sbjct: 60 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 119
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 229
KSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ +
Sbjct: 120 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 179
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 289
++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 180 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 238
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
+A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P P PSG
Sbjct: 239 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 298
Query: 350 LGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVP 393
+ Q A PP Q + Q +PG +RPA AP P F
Sbjct: 299 YFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTM 357
Query: 394 VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS 453
+ Q + +R A QT P P A P R + + + G +
Sbjct: 358 RPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN 410
Query: 454 MLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVE 506
P P+ ++ QP P+TA + LA A P++Q+ +LGE L+PL++
Sbjct: 411 ----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLAFAPPQEQKQMLGERLFPLIQ 462
Query: 507 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 463 AMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 513
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 21/239 (8%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L +
Sbjct: 41 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 100
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 101 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 160
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +
Sbjct: 161 VERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 219
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 220 G-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 277
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/583 (39%), Positives = 335/583 (57%), Gaps = 53/583 (9%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
F + A AL+ +N + + +K IR+M+S+RDP R+SG GN+F+KNL+ ID+ L + F
Sbjct: 151 FSQADAMTALEKMNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELF 210
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S FG+ILSCK+A + G S+G+GFVQF +ESA AI+ LN +Q+ V HF++K E
Sbjct: 211 SKFGDILSCKVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSE 270
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R + K+ N+++KNLD+ T+E +K F ++G + S +M+ DG SK FGFV+F++
Sbjct: 271 R-SANNDDKYTNLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKS 329
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A KA EA+NG + YV +AQKK+ER+Q L+ E+ E + K G N+YIKN
Sbjct: 330 PDSAKKAKEAMNGIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKN 389
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
+ D +DDE L+E F EFG ITS K+MRD GISKG GFV ++TP+EA A++ M G M
Sbjct: 390 ISDRVDDETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFY 449
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMP---------MYPPGPSGL 350
KPLYVA+AQRKE+R+ARL+ +F+++ + A P +P P +P GPS
Sbjct: 450 DKPLYVAIAQRKEDRKARLEQRFAELATMVGAASPVIPTGYPHVYFAHPSTHFPQGPSRQ 509
Query: 351 GQQFLYGQAPPAIIPPQAGFG--YQQQLVP---GMRPAGAP-MPNFFVPVVSQGQQGQRP 404
G F+Y P G G ++Q + P ++ AP MPN P + +G+
Sbjct: 510 G--FMY---------PPMGLGQEWRQNVFPSPHNIQQIHAPLMPN--TPRQYRNNRGRMT 556
Query: 405 GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPV-DMGA 463
G + PH + HA +M F G +P V G
Sbjct: 557 GN-------------MMTFPHTVNYVSHAQTAKDFMSMSRQQF--GHAKYIPADVMTSGL 601
Query: 464 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
I D P T+L LA A P+QQR +LG LYPLVE+ + A+K+TGMLL++
Sbjct: 602 AIHHSDPVSSVNDPFTSL---LAAAPPDQQRNMLGNRLYPLVERYHPELASKITGMLLDL 658
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA-NNPADQLA 565
D ++V+ L+ SP+ L AK+ E ++L+ QQ A P DQ A
Sbjct: 659 DSSDVVLLICSPDMLSAKINECAQLLQ--GQQAAKTKPEDQEA 699
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 157/287 (54%), Gaps = 18/287 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +L + + L D FS G + S ++ D + S +G+V + ++ A A++K+
Sbjct: 104 LYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKM 163
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LI DK + V R+ A ++ NVFVKNL++ + L+++F ++G I S
Sbjct: 164 NHSLILDKPIRV----MWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDILSC 219
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V R+ DG S+ +GFV F + A A+E LN F+ R+ +V KKSER
Sbjct: 220 KVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERS------- 272
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
DK+ NLY+KNL D + +E +K FS+FG + S K+M+ G SKG GFV+
Sbjct: 273 ----ANNDDKYT--NLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVS 326
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F +P+ A +A MNG + SK LYVA AQ+K ER+ LQ + R
Sbjct: 327 FKSPDSAKKAKEAMNGIPLGSKSLYVARAQKKAERKQYLQLLHEEKR 373
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 242/563 (42%), Positives = 340/563 (60%), Gaps = 33/563 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+++ N + LN K++R+M+S RDP RKS GN+F+KNL +SID+ L D F +GN
Sbjct: 66 AIRAIELKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGN 125
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ T G+SKG+GFVQFE++ES++ AI+KLNG + DK+++VG F++K +R
Sbjct: 126 ILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPG 185
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ N+++KNLD ++ L++ F +G I S V+ +D +G SK FGFVN++N DDA
Sbjct: 186 PDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAK 245
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KA+EA+NG + + YV +AQKK+EREQ L QFE+ KE + K++G N+Y+KN+ D +
Sbjct: 246 KAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHV 305
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DE+L++ FS GTITS K+MRD GISKG GFV FSTPEEA++A+ +G M KPLY
Sbjct: 306 SDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLY 365
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPS---VPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
VA+AQRKE+R+A+LQ Q++Q GPS +P P Y SG+
Sbjct: 366 VALAQRKEDRKAQLQLQYAQQLARLSGPSTAIIPSGYPPYYYAASGVISH---------- 415
Query: 364 IPPQAGFGYQQ-QLVPGMRPAG-APMPNFF----VPVVSQG--QQGQRPGGRRGAGPVQQ 415
+PP+AG YQ L PG G AP F VP VS Q Q G G Q
Sbjct: 416 VPPRAGLMYQHLALRPGWGANGFAPPARSFQQSPVPAVSNNTRQHRQNRGKLNGNSIAQG 475
Query: 416 TQQPLPIMPHQ-------MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 468
+P + R + + G+ + +G V G+
Sbjct: 476 NTHSGTYLPQAQQISQPVISSRDSSTQQRTGQARY-----IPSGRQRDVEKGSGSSSVGS 530
Query: 469 DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 528
++ G L + LA A+PEQQ+ +LGE LY LV +L+ AAK+TGMLLEMD E+
Sbjct: 531 NSGRGGSQGSEMLHSLLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGEL 590
Query: 529 LHLLESPEALKAKVAEAMEVLRS 551
L LLESPE+L AKV EA++VL++
Sbjct: 591 LLLLESPESLSAKVEEAVQVLKN 613
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 159/287 (55%), Gaps = 17/287 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAID 99
++++ +L + L D FS F ++ S ++ D S G+S +G++ F + + A AI+
Sbjct: 12 ASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIE 71
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
N +N K + V R+ A K+ N+FVKNL ES + L+ IF +YG I
Sbjct: 72 LKNNSTLNGKAMRV----MWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNIL 127
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ V+ DGKSK +GFV FE+ + + A+E LNG D+E YVGK KKS+R L G
Sbjct: 128 SSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDR--ILPG 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ NLY+KNL + + L+E FS FG I S + +D +G+SKG GF
Sbjct: 186 PDARYT----------NLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGF 235
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
V + P++A +A+ MNG + SK LYVA AQ+K ER L QF +
Sbjct: 236 VNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEE 282
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 234/537 (43%), Positives = 323/537 (60%), Gaps = 67/537 (12%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG IL
Sbjct: 105 KAIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 164
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 165 SCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEE 224
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D + T+E+ +K+F YG ITS + +D DGKSK FGFVNFE D A
Sbjct: 225 MKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAV 284
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL++KNL DSI
Sbjct: 285 KAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSI 344
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FGTITS KVM D +G SKG GFV F+TPEEA++A+ EMN +M+ +KPLY
Sbjct: 345 DSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLY 404
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YGQAPPA 362
VA+AQRK+ RR++L+ Q + M + GL QF+ YGQ
Sbjct: 405 VALAQRKDVRRSQLEQQIQARNQMRMQNAA---------AAGGLPGQFMPPMFYGQQ--G 453
Query: 363 IIPPQAGFGYQQQLVPG------MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT 416
PP G PG MR G P P +Q RPG
Sbjct: 454 FFPPN---GRGNAPFPGPNPQMMMRGRGQPFP----------EQWPRPG---------PN 491
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF-DMGAGSMLPVPVDMGAGIPRRDASVGQP 475
QP+P+ + +PP+ QDF ++ G P R+ + +
Sbjct: 492 GQPVPV--YGIPPQFQ----------QDFNGQNVRPPQQQQQQQPRGGYYPNRNQTNKRD 539
Query: 476 MPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEV 528
L+ +A+ +QQ+ +LGE LYP + + E +AA K+TGM+L ++ E+
Sbjct: 540 -----LAAIIASVPQDQQKRILGEELYPRIVATGKAQEPEAAGKITGMMLGLENQEI 591
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ S + L +IF G ++S V RD KS + +VN+ +D KA+E
Sbjct: 50 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEE 109
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 110 LNYTPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKNLHPAIDNKAL 153
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 154 HDTFSAFGKILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHI 213
Query: 312 RKEERRARLQ 321
K++R ++ +
Sbjct: 214 SKKDRESKFE 223
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/403 (48%), Positives = 273/403 (67%), Gaps = 35/403 (8%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+T + K RIM+S RDPS+RK G+GNI+IKNL +ID+K+LH+TFS+FGNIL
Sbjct: 94 KAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD +G S+GFGFV FEN+ A++AI+ +NGML+ND++V+V + K++R++
Sbjct: 154 SCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEE 213
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K KF N++VKN+D T+ E+ +++F +YG ITSAV+ +D +GK + FGF+NFE+ AA
Sbjct: 214 VKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAA 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LN F + YVG+AQKK ER+QELK Q+E A E + K+QG+NL+IKNL DSI
Sbjct: 274 RAVDELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSI 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLK+ F+ FGTITS KVM+D +G S+G GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR----------------------PVAMGPSVPPRMP 341
VA+AQRKE RR +L Q +QMR P+ G +PPR+P
Sbjct: 394 VAIAQRKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFIPPPMYYG-GIPPRVP 452
Query: 342 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG 384
P P + G IPPQ FG + G P G
Sbjct: 453 FQGPNPQ------MTGMPKNGAIPPQQ-FGRPGPMYGGFGPQG 488
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 20/211 (9%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 179
E ET ++T +++V LD S ++ L IF G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ + KA+E LN + + +Q+ ++ G N+YI
Sbjct: 87 HDHEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG----------------NIYI 130
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL +ID++ L E FS FG I SCKV D +G+S+G GFV F +A A+ +NG +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGML 190
Query: 300 IVSKPLYVAVAQRKEERRARLQ---AQFSQM 327
+ + +YVA K++R+++L+ A+F+ +
Sbjct: 191 MNDQEVYVAWHVSKKDRQSKLEEVKAKFTNI 221
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 238/573 (41%), Positives = 340/573 (59%), Gaps = 67/573 (11%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A+D LN++ + N+ RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG IL
Sbjct: 117 KAIDELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++V+VG + K++RE+
Sbjct: 177 SCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRESKFEE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K + N++VKN+D ++++ + +F YG ITS + +D DGKSK FGFVN+E A
Sbjct: 237 MKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAV 296
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVEALN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL++KNL D I
Sbjct: 297 EAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQI 356
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FGTITS KVM D +G S+G GFV FSTPEEA++A+ EMN +M+ KPLY
Sbjct: 357 DSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLY 416
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR++L+ Q + M + +G QF+ PP
Sbjct: 417 VALAQRKDVRRSQLEQQIQARNQMRMQNAA---------AAAGFPGQFM----PPMY--- 460
Query: 367 QAGFGYQQQLVPGMR---PAGAPMPNFFVPVVSQGQQGQ-------RPGGRRGAGPVQQT 416
+G Q PG R P P P ++ +GQ GQ RPGG G
Sbjct: 461 ---YGQQGFFPPGGRGNAPFPGPNPQM---MMRRGQPGQPFPEQWPRPGGPNG------- 507
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 476
QP+P+ + +PP ++P R Q G P G +P +D
Sbjct: 508 -QPVPV--YGIPP-----QFPDQRAQQQQQQQQQRGYY---PGQAGVKVPAKD------- 549
Query: 477 PITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLL 532
L+ +++ PEQQ+ +LGE LYP + + E +AA K+TGM+L ++ E+L LL
Sbjct: 550 ----LAAIISSVPPEQQKRILGEELYPRIVATGKAQEPEAAGKITGMMLGLENQEILDLL 605
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
+ E +A+ + +A A++ A
Sbjct: 606 DDDELFNNHFEDALTAYEEYKKSEAGVAANEEA 638
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ L+ S++ L + FS G + S ++ D S +S G+ +V + E + AI
Sbjct: 60 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAI 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D+LN LI ++ + +R+ A ++ N+F+KNL + ++ L F +G I
Sbjct: 120 DELNYSLIENRPCRI----MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SKCFGFV++E A+ A A+E +NG +DRE YVGK K +RE
Sbjct: 176 LSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRE---- 231
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+FE+ MK N+Y+KN+ +++ ++LF+ +G ITS + +D G SKG G
Sbjct: 232 SKFEE-MKANY-----TNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFG 285
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV + + A A+ +N K I + +YV AQ+K ER L+ Q+ +R
Sbjct: 286 FVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIR 335
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/356 (53%), Positives = 252/356 (70%), Gaps = 13/356 (3%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A RA++ LN+ LN K +RIM+SHRDPS RKSG GNIFIKNLDKSID KALHDTFS+FG
Sbjct: 77 AAERAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFG 136
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
ILSCK+ATD +G SKG+GFV FE++ +A AI +N I K V+VG F ++ +R
Sbjct: 137 KILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQG 196
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
K + NVFVKNL D++L K+ E+G +TSAVVM+D G SK FGF+NF++A+ A
Sbjct: 197 --KDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECA 254
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AK VEALN K+ + Y G+AQKK+ERE L+ + E++ +E K+QG+NLY+KNL D
Sbjct: 255 AKCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADE 314
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+DD+ L++LF+ GTITSCKVM+D SG SKG GFV F++ +EA+RA+ EMNGKM+ KPL
Sbjct: 315 VDDDALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPL 374
Query: 306 YVAVAQRKEERRARLQAQF-------SQMRP----VAMGPSVPPRMPMYPPGPSGL 350
YVA+AQRK+ RRA+L+A + RP MGP P MP + GP G+
Sbjct: 375 YVALAQRKDVRRAQLEANVQNRLGMGAMTRPPNPMTGMGPYGPGAMPFFAAGPGGM 430
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 160/293 (54%), Gaps = 26/293 (8%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK---ESAQNA 97
++++ +L+K + L + FSS G + S ++ D + +S G+ +V + + ++A+ A
Sbjct: 22 SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERA 81
Query: 98 IDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
++ LN ++N K ++ H R+ A K+ N+F+KNLD+S + L F +
Sbjct: 82 METLNYHVLNGKPMRIMWSH------RDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAF 135
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S V D +G SK +GFV+FE+ A +A++ +N K+ + + YVG QK+++R Q
Sbjct: 136 GKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQ 195
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
K N+++KNL + D++L ++ +EFG +TS VM+D G SK
Sbjct: 196 --------------GKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSK 241
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GF+ F E A++ + +N K I K LY AQ+K ER A L+ + + +
Sbjct: 242 GFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESK 294
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/433 (47%), Positives = 281/433 (64%), Gaps = 43/433 (9%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LN+T + +RIM+S+RDP++R++GTGNIFIKNL +IDHKALHDTFS+
Sbjct: 116 IADAERALDTLNYTTVRGNPVRIMWSNRDPALRRAGTGNIFIKNLHTTIDHKALHDTFSA 175
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCKIA DG +S G GFV +E E A+NAI +NGML+ND+QV+VG + K+ER
Sbjct: 176 FGKILSCKIAMDGE-RSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYVGLHISKKERS 234
Query: 124 TVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++KF N++VKN+D S + +++F +GT S V+M D +G SK FGFVN+EN
Sbjct: 235 STIEEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYEN 294
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+DA +AVE ++ K+ ++ YVG+AQKK ERE+EL+ Q+E+ +E + K+QG+NL++KN
Sbjct: 295 HEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELRRQYEKIREEKLSKYQGVNLFVKN 354
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
+ +SIDDEKL++ FS FG ITS K+M D +GISKG GFV FS P+EA++A+ EMN +M+
Sbjct: 355 IDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKAVTEMNNRML 414
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 360
+KP+YVA+AQRKE RR +L AQ Q A +PP P G Y P
Sbjct: 415 ANKPIYVALAQRKEVRRQQLAAQMQQRAMRAHQQMMPPGYP---------GASIFY---P 462
Query: 361 PAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ--QTQQ 418
P +PPQA +F P +Q Q RP R GP Q QQ
Sbjct: 463 PGGVPPQAR-------------------GYFNPQQAQQQMMARP---RWTGPGQPPHMQQ 500
Query: 419 P-LPIMPHQMPPR 430
P P P QMPP
Sbjct: 501 PGFP--PQQMPPH 511
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 153/297 (51%), Gaps = 16/297 (5%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P + + +++I +L+ S+ L + F+ G + S ++ D + +S G+G++ + +
Sbjct: 57 PIMTGATPASLYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDI 116
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
A+ A+D LN + V + R+ + N+F+KNL + + L
Sbjct: 117 ADAERALDTLNYTTVRGNPVRI----MWSNRDPALRRAGTGNIFIKNLHTTIDHKALHDT 172
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S + DG+ +S GFV++E + A A++ +NG +D++ YVG K
Sbjct: 173 FSAFGKILSCKIAMDGE-RSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYVGLHISKK 231
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 271
ER + +E KF N+Y+KN+ S+D + +E+F FGT SC +M D
Sbjct: 232 ERSSTI--------EEKRSKF--TNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEE 281
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G SK GFV + E+A RA+ EM+ K I K +YV AQ+K ER L+ Q+ ++R
Sbjct: 282 GNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELRRQYEKIR 338
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/360 (51%), Positives = 260/360 (72%), Gaps = 16/360 (4%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RA++ LN++ + N+ RIM+S RDP++R++G GNIFIKNLD ID+KALHDTF++FGNIL
Sbjct: 102 RAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNIL 161
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+AT SG S G+GFV +E E+A AI +NGML+NDK+V+VGH + ++ER+
Sbjct: 162 SCKVATSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEE 220
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ +F NV+ KN+D TDE+ +K+F +YG ITS V+ RD DGKSK FGFVNFEN D+A
Sbjct: 221 SRARFTNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQ 280
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ L+ F ++ +V +AQKKSERE+EL+ +E A E + KFQG+NLY+KN+ +S
Sbjct: 281 TAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESY 340
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L++ F+ FG ITSCK+MR PSG+S+G GFV +S PEEA++A++EMNGKM+ ++PLY
Sbjct: 341 DDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLY 400
Query: 307 VAVAQRKEERRARLQAQF-------SQMRPVAMGPSVP------PRMPMYPPGPSGLGQQ 353
VA+AQRK+ RR +L+AQ Q + A G P P+ +P P G+G +
Sbjct: 401 VALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMGDE 460
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 18/190 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VNF NA D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 106
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A++ T QG N++IKNL ID++ L
Sbjct: 107 LNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFIKNLDAGIDNKAL 150
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV SG S G GFV + T E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGNILSCKVATSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHI 209
Query: 312 RKEERRARLQ 321
++ER+A+++
Sbjct: 210 PRKERQAKIE 219
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
SP++Q+ +LGE++YP V + + A K+TGM+LE+ TE+LHLLE EAL AKV+EA+EV
Sbjct: 474 SPDEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVSEALEV 533
Query: 549 LRSVAQ 554
L+ Q
Sbjct: 534 LKEYQQ 539
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SG 272
EQ G EQA + +LY+ L S+ + L E+F+ G + S +V RD +
Sbjct: 25 EQPAAGNGEQANRNADAAANNTSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTR 84
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
S G +V F + RA+ ++N +I ++P + +QR
Sbjct: 85 RSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQR 124
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/547 (42%), Positives = 327/547 (59%), Gaps = 55/547 (10%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+FIKNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+ FV FE +E+A AI+K+
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 102 NGMLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
NG+L+ND++VFVG F ++ERE + K K F NV++KN E D +LK++F ++G
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S VMRD GKS+ FGFV++E +DA KAV+ +NGK+ + +VG+AQKK ER+ ELK
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKR 179
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+FEQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GF
Sbjct: 180 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 238
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF--------------- 324
V F + EEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+
Sbjct: 239 VCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHVAGLRALPAGAI 298
Query: 325 -SQMRPVAMG---PSVPP---RMPMYPPG------PSGLGQQ--FLYG-QAPPAIIP--- 365
+Q +P A G P VP R P Y P P+ QQ L G Q P+ +
Sbjct: 299 LNQFQPAAGGYFVPEVPQAQGRPPYYTPNQLAQMRPNPCWQQGGRLQGFQGMPSALRQSG 358
Query: 366 PQAGFGYQQQLVP-GMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
P G+ L P G PA +P V + GAG QQ
Sbjct: 359 PGPALGH---LAPTGNAPASRGLPTIIAQRVRSECPDRLAMDFGGAGAAQQG-------- 407
Query: 425 HQMPPRGHAYRYPLGR-NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 483
+ + P R N+ P + + ++ + P+TA +
Sbjct: 408 --LTDSCQSGGVPTARPNLAPPATVAATAPRAVAPYKYASSVRSPHPTIQRQEPLTA--S 463
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+ +E+LH+LE+PE+L +KV
Sbjct: 464 MLAAARPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIGNSELLHMLETPESLCSKVD 523
Query: 544 EAMEVLR 550
EA+ VL+
Sbjct: 524 EAVAVLQ 530
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/577 (41%), Positives = 338/577 (58%), Gaps = 75/577 (12%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+ P+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG IL
Sbjct: 108 KAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 167
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 168 SCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEE 227
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D + ++E +K+F +G ITS + +D DGKSK FGFVNFE+ + A
Sbjct: 228 MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAV 287
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL++KNL D+I
Sbjct: 288 KAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTI 347
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FGTITS KVM D +G SKG GFV F+TPEEA++A+ EMN +MI KPLY
Sbjct: 348 DSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLY 407
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YGQAPPA 362
VA+AQRK+ RR++L+ Q Q R +M M GL QF+ YGQ
Sbjct: 408 VALAQRKDVRRSQLEQQI-QAR---------NQMRMQNAAAGGLPGQFIPPMFYGQQ--G 455
Query: 363 IIPPQAGFGYQQQLVPG------MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT 416
PP G PG MR G P P +Q RPG
Sbjct: 456 FFPPN---GRGNAPYPGPNPQMMMRGRGQPFP----------EQWPRPG---------PN 493
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM----GAGIPRRDASV 472
QP+P+ + +PP+ F D +M P G P R+ +
Sbjct: 494 GQPVPV--YGIPPQ--------------FQQDFNGQNMRPQQQQQQQPRGGYYPNRNQTS 537
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEV 528
+ L+ +++ +QQ+ +LGE LYP + + E +AA K+TGM+L ++ E+
Sbjct: 538 KRD-----LAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEI 592
Query: 529 LHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
L LL+ E +A+ + +A A++ A
Sbjct: 593 LDLLDDDELFNNHFEDALTAFEEYKKSEAAGNAEEQA 629
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 177
+++ E+ + +++V L+ S + L +IF G ++S V RD KS + +V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 99 NYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG----------------NI 142
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+IKNL +ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG
Sbjct: 143 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
Query: 298 KMIVSKPLYVAVAQRKEERRARLQ 321
++ + ++V K++R ++ +
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFE 226
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/347 (55%), Positives = 252/347 (72%), Gaps = 7/347 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PALSVKVMTDESGKSKGFGFVSFERH 238
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 357
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
KPLYVA+AQRKEER+A L Q+ Q P P P PSG
Sbjct: 358 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 404
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 19/298 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+L FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDL---FGPALSVKVMTDE 223
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 281
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 225/587 (38%), Positives = 335/587 (57%), Gaps = 48/587 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AA AL+ LN + + +K IR+M+S+RDP R+SG GN+F+KNL+ +D+ +L + F F
Sbjct: 90 ADAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKF 149
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+A + G S+G+GFVQF +ESA +I LN +Q+ V F++K ER T
Sbjct: 150 GDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERST 209
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K+ N+++KNLD+ T+E +K F +YG + S +M+ DG SK FGFV+F+N +
Sbjct: 210 NN-DDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPES 268
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A +A E++NG + YV +AQKK+ER+Q L+ E+ E + K G N+YIKN+ D
Sbjct: 269 AKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKSNGSNVYIKNIND 328
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+ D+ L+E F+EFG ITS K+MRD GISKG GFV ++TPEEA A++ M G M KP
Sbjct: 329 EVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKP 388
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
LYVA+AQRKEERRA+L+ +F+++ + A P +P P QF + A P+
Sbjct: 389 LYVAIAQRKEERRAKLEQRFAELATMVGATSPVIPTGYP-----------QFYF--AHPS 435
Query: 363 IIPPQA----GFGY-----QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV 413
PQ+ GF Y Q+ M P+ + P++ + R R G +
Sbjct: 436 THLPQSPGRQGFMYPPIGISQEWRHNMFPSSHNIQQIHSPIMRNTPRQYRNNRGRMNGNM 495
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
+ +PH P + + + Q F +P V M G+ ++
Sbjct: 496 MHFHHTVNYVPHAQPAKEF-----MSMSRQRF----SHAKYIPNDV-MANGL-----AIH 540
Query: 474 QPMPITALSTA----LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 529
I++L+ A LA A PE+Q+ +LG LYPLVE+ D A+K+TGMLLE+ +EV+
Sbjct: 541 HGDSISSLNDAFNNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVV 600
Query: 530 HLLESPEALKAKVAEAMEVLRSVA----QQQANNPADQLASLSLNEN 572
LL S L AK+ E +++L+ V Q+A +P L S +N N
Sbjct: 601 MLLYSSNMLSAKIEECVKLLQEVKPKPEDQEALHPGFLLDSAGVNAN 647
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 157/287 (54%), Gaps = 18/287 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +L +S+ + L + F G + S ++ D + S +G+V + ++ A A++KL
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LI DK + V R+ A ++ NVFVKNL++ + L+++F ++G I S
Sbjct: 100 NHSLILDKPIRV----MWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSC 155
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V ++ DG S+ +GFV F + A +++ LN F R+ +V KKSER
Sbjct: 156 KVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERS------- 208
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
DK+ NLY+KNL D I +E +K FS++G + S K+M+ G SKG GFV+
Sbjct: 209 ----TNNDDKYT--NLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVS 262
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F PE A RA MNG ++ SK LYVA AQ+K ER+ LQ + R
Sbjct: 263 FQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKR 309
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/583 (38%), Positives = 330/583 (56%), Gaps = 40/583 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ AA AL+ LN + + +K IR+M+S+RDP R+SG GN+F+KNL+ +D+ +L + F F
Sbjct: 90 ADAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKF 149
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+A + G S+G+GFVQF +ESA +I LN +Q+ V F++K ER T
Sbjct: 150 GDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERST 209
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K+ N+++KNLD+ T+E +K F +YG + S +M+ DG SK FGFV+F+N +
Sbjct: 210 NN-DDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPES 268
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A +A E++NG + YV +AQKK+ER+Q L+ E+ E + K G N+YIKN+ D
Sbjct: 269 AKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNIND 328
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+ D+ L+E F+EFG ITS K+MRD GISKG GFV ++TPEEA A++ M G M KP
Sbjct: 329 EVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKP 388
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
LYVA+AQRKEERRA+L+ +F+++ + A P +P P QF + A P+
Sbjct: 389 LYVAIAQRKEERRAKLEQRFAELATMVGATSPVIPTGYP-----------QFYF--AHPS 435
Query: 363 IIPPQA----GFGY-----QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV 413
PQ+ GF Y Q+ M P+ + P++ + R R G +
Sbjct: 436 THLPQSPGRQGFMYPPIGISQEWRHNMFPSSHNIQQIHSPIMRNTPRQYRNNRGRMNGNM 495
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
+ +PH P + + + Q F +P + M G+
Sbjct: 496 MHFHHTVNYVPHAQPAKEF-----MSMSRQRF----SHAKYIPNDI-MANGLAIHHGDSI 545
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
M A + LA A PE+Q+ +LG LYPLVE+ D A+K+TGMLLE+ +EV+ LL
Sbjct: 546 SSMN-DAFNNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLY 604
Query: 534 SPEALKAKVAEAMEVLRSVA----QQQANNPADQLASLSLNEN 572
S L AK+ E +++L+ V Q+A +P L S +N N
Sbjct: 605 SSNMLSAKIEECVKLLQEVKPKPEDQEALHPGFLLDSAGVNAN 647
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 157/287 (54%), Gaps = 18/287 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +L +S+ + L + F G + S ++ D + S +G+V + ++ A A++KL
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LI DK + V R+ A ++ NVFVKNL++ + L+++F ++G I S
Sbjct: 100 NHSLILDKPIRV----MWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSC 155
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V ++ DG S+ +GFV F + A +++ LN F R+ +V KKSER
Sbjct: 156 KVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERS------- 208
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
DK+ NLY+KNL D I +E +K FS++G + S K+M+ G SKG GFV+
Sbjct: 209 ----TNNDDKYT--NLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVS 262
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F PE A RA MNG ++ SK LYVA AQ+K ER+ LQ + R
Sbjct: 263 FQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKR 309
>gi|294461458|gb|ADE76290.1| unknown [Picea sitchensis]
Length = 313
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 220/315 (69%), Positives = 255/315 (80%), Gaps = 8/315 (2%)
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
MRD G SKGSGFVAFS+P+EASRALAEMNGK++VSKPLYVA+AQRKEERRARLQAQFSQ
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
Query: 327 MR-PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQA-GFGYQQQLVPGMRPAG 384
+R PV M P+VP R+PMYPPG GL QQ YGQ PPA+IPPQA GFGYQQQL+PGMRP
Sbjct: 61 LRNPVGMAPAVPARVPMYPPGGPGLNQQIFYGQGPPALIPPQAAGFGYQQQLIPGMRPGS 120
Query: 385 APMPNFFVPVV-SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH-AYRYPLGRNM 442
AP+PNF++P++ +Q Q A QQ QQ LP++ QM PRG+ YRYP GRN+
Sbjct: 121 APIPNFYLPLMQAQQGQRPGGRRGGVAPIQQQPQQQLPLLQQQMLPRGNRVYRYPPGRNV 180
Query: 443 QDFPFDMGAGSMLPVPVDMGAGIPRRDA--SVGQPMPITALSTALANASPEQQRTLLGES 500
+ P AG M P+P+DMG G+P R A ++ QP+PI AL++ALANA+PEQQRT+LGES
Sbjct: 181 NEIPLSGVAGGMHPLPLDMG-GLPLRAAETTISQPIPIGALASALANATPEQQRTMLGES 239
Query: 501 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 560
LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR+V Q QA NP
Sbjct: 240 LYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVTQAQA-NP 298
Query: 561 ADQLASLSLNENLVS 575
A+QLA+LSLNE LVS
Sbjct: 299 AEQLAALSLNETLVS 313
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
MRD G SK GFV F + D+A++A+ +NGK + YV AQ+K ER L+ QF Q
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 75 DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
D G SKG GFV F + + A A+ ++NG ++ K ++V RK+ER
Sbjct: 3 DFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEER 50
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 227/573 (39%), Positives = 326/573 (56%), Gaps = 55/573 (9%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
F + A ALD LN + + +K IR+M+S+RDP R+SG GNIF+KNL S+D+ +L + F
Sbjct: 170 FSRADAVVALDKLNHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELF 229
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S FG++LSCK+A + G S+G+GFVQF ++ESA AI LNG L ND+++ V F++K E
Sbjct: 230 SKFGDVLSCKVAKNEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSE 289
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R + KF N+++K+LD+ T+E +K F ++G+I S +M+ DG S FGFV+F+N
Sbjct: 290 R-SANNDDKFTNLYMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQN 348
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KA +NG + YV +AQKK ER+Q L+ E+ E + + N+YIKN
Sbjct: 349 PESAIKAQSTMNGMLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKN 408
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
+ D +DD+ L+ F EFG ITS KVMRD GIS+G GFV +STPEEA A+ M G M
Sbjct: 409 IHDEVDDDALRARFVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFF 468
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
KPLYVA+ QRKEER+A+LQ F+Q+ + V P M P+G Q +Y P
Sbjct: 469 GKPLYVAIFQRKEERKAKLQQHFAQLARM-----VGPANSMI---PTGYPQ--VYFAHPS 518
Query: 362 AII---PPQAGF-----GYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG-GRRGAG- 411
I PP+ GF G + P M P + PV+ + R GR G
Sbjct: 519 THIPQGPPRHGFVYPPMGLSHEWRPSMFPPAPNLQQIHSPVMPNSPRHYRSNRGRMGGNM 578
Query: 412 -PVQQTQQPLPIMPHQMP-------PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 463
P+ + M H P PR + +P + F D+ A S+
Sbjct: 579 MPLPHAVHTMNYMTHPQPAKEFMSLPR-QRFNHP-----KYFSNDVMANSL--------- 623
Query: 464 GIPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
++ Q P++ + S LA+A P +Q+ LLG LYPLVE+ + + A+K+TGM
Sbjct: 624 -------AIHQSDPVSTMNDSFSNYLASAPPAEQKNLLGNRLYPLVERHQPELASKITGM 676
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 552
LLE+D +EV+ LL S E L KV E +++L++
Sbjct: 677 LLELDNSEVVTLLCSSEMLSVKVDECVQLLQAT 709
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 164/287 (57%), Gaps = 18/287 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +L + + + L + FS G + S ++ D + +S +G+V + ++ A A+DKL
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N L+ DK + V R+ A ++ N+FVKNL S + L+++F ++G + S
Sbjct: 183 NHSLVLDKPIRV----MWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSC 238
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V ++ DG S+ +GFV F + + A +A+ LNG F+DR+ +V KKSER
Sbjct: 239 KVAKNEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERS------- 291
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
DKF NLY+K+L D I +E +K FS+FG+I S K+M+ P G S G GFV+
Sbjct: 292 ----ANNDDKFT--NLYMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVS 345
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F PE A +A + MNG ++ SK LYVA AQ+KEER+ LQ + R
Sbjct: 346 FQNPESAIKAQSTMNGMLLGSKALYVARAQKKEERKQYLQRLHEEKR 392
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 247/621 (39%), Positives = 342/621 (55%), Gaps = 90/621 (14%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ +N+ + + IRIM+S RDPS+RKSG GNIFIKNL K+I+ K L+DTFS FG
Sbjct: 56 AERALEQMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGR 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIA D +G SKG+GFV FEN+E A+ AI K+N M I K V+VG+F+ + +R++
Sbjct: 116 ILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQN 175
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNN++VKN T DE LK++F E+G I SA VM+D +GKSK FGFV + N + A
Sbjct: 176 RKQKFNNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAE 235
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF-QGLNLYIKNLGDS 245
AV A++GK+ R Y +AQ+K ER++ELK + E+ E K+ +NLY+KNL D
Sbjct: 236 AAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDE 295
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDDE+LKE+FS++G I+S KVM D + SKG GFV F+ PE+A++A+ E NG++ SKPL
Sbjct: 296 IDDERLKEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPL 355
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP--MYP------PGPSGLGQQFLYG 357
YVA+AQRKE+RRA L A+ +Q A+ + PP +P M+P P P QQ
Sbjct: 356 YVAIAQRKEDRRAELAAKHTQ-HLNALRSTAPPMIPALMHPTQNYFHPYP----QQARLY 410
Query: 358 QAPPAIIPPQAGFGYQQQLVPGM------RP--AGAPMPNFFVPVVSQGQQGQ------- 402
AP ++ Q + L + RP + P PN V + Q Q
Sbjct: 411 SAPGQLMQAQPRWSRNGPLAADLSQLAMSRPPLSNYPNPNHAVAMAPQMNMNQMRSPANV 470
Query: 403 -----------RPGGRRGAGPVQQTQQPL--PIMPHQMPPRGHAYRYPLGRNMQDFPFDM 449
G GP QQ QQ P++P Q G A L + Q P
Sbjct: 471 FRTIVPTPMPSMTSNMMGMGPRQQQQQVANRPVLPVQPVLAGQA--GALAQRPQMVPGPN 528
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMP-----------------ITALSTALANASPEQ 492
A ++ + M PR + + Q MP ++A S +A A+ +
Sbjct: 529 QAANLRQITQSM----PR--SQMHQVMPNMTGAAGNVRFNQTARNVSAQSAQMAPANHQN 582
Query: 493 QRTLLG-----------------------ESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 529
+ LG E L+PL+ + A K+TGMLL +D EV+
Sbjct: 583 ALSALGDQTTYSIGELARLSEDDQKRALGEKLFPLIREQYPQLAHKLTGMLLGLDIPEVI 642
Query: 530 HLLESPEALKAKVAEAMEVLR 550
H+LES + L+ K+ E + VLR
Sbjct: 643 HMLESKDTLQEKLQEGINVLR 663
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 160/290 (55%), Gaps = 21/290 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L I+ L FS G + + D S +S G+G+V FE+ + A+ A+++
Sbjct: 3 SLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQ 62
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+N +V +G +R +R+ K+ N+F+KNL ++ ++L F +G I
Sbjct: 63 MN------YEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRI 116
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D +G SK +GFV+FEN + A +A++ +N + YVG +S+R+ + +
Sbjct: 117 LSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNR 176
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
Q KF N+Y+KN DDEKLKE+F+EFG I S VM+D G SKG G
Sbjct: 177 KQ----------KFN--NIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFG 224
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV + PE A A+A M+GK I + LY + AQRKEER+ L+ + + +
Sbjct: 225 FVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRLEKQK 274
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 245/568 (43%), Positives = 334/568 (58%), Gaps = 47/568 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+++ N + LN K++R+M+S RDP RK+ GN+F+KNL +SID+ L D F +GN
Sbjct: 66 AIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGN 125
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ G+SKG+GFVQFE++ES+ AI+KLNG + DKQ++VG F++K +R
Sbjct: 126 ILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPG 185
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ N+++KNLD ++ L++ F +G I S V+ +D G SK FGFVN++N DDA
Sbjct: 186 PDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAK 245
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+A+EA+NG K + YV +AQKK+EREQ L QFE+ KE + K++G N+Y+KN+ D +
Sbjct: 246 RAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHV 305
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DE+L++ FS G ITS K+MRD GISKG GFV FSTPEEA++A+ +G M KPLY
Sbjct: 306 SDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI--I 364
VA+AQRKE+R+A+LQ Q++Q GPS YPP Y A I +
Sbjct: 366 VALAQRKEDRKAQLQLQYAQQVAGLSGPSTAIIPGGYPP---------YYYAATGVISHV 416
Query: 365 PPQAGFGYQQQ-LVPGMRPAGAPMPNFF-----VPVVSQGQQGQRPG-GRRGAGPV---- 413
PP+AG YQ + PG G +P VP VS + R GR P+
Sbjct: 417 PPRAGLMYQHLPMRPGWGANGFALPARSFQQSPVPAVSNNTRQHRQNRGRLNGNPIAQGN 476
Query: 414 ----------QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 463
QQ QP+ I G A P GR DM GS
Sbjct: 477 THSVTYLPQAQQISQPV-ISSSTQQRTGQAKYLPSGRQR-----DMEKGSGSSS------ 524
Query: 464 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
S L + LA A+PEQQ+ +LGE LY LV +L+ AAK+TGMLLEM
Sbjct: 525 ---SGSNSGRGSQGSEMLHSMLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEM 581
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLRS 551
D E+L LLESPE+L AKV EA++VL++
Sbjct: 582 DNGELLLLLESPESLSAKVEEAVQVLKN 609
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 159/288 (55%), Gaps = 17/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L D FS F ++ S ++ D S G+S +G+V F + + A AI+
Sbjct: 13 SLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIEL 72
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
N +N K + V R+ A K N+FVKNL ES + L+ +F +YG I S
Sbjct: 73 KNNSTLNGKAMRV----MWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILS 128
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ V+ DGKSK +GFV FE+ + + A+E LNG D++ YVGK KKS+R L G
Sbjct: 129 SKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDR--ILPGP 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ NLY+KNL + + L+E FS FG I S + +D G+SKG GFV
Sbjct: 187 DARYT----------NLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ P++A RA+ MNG + SK LYVA AQ+K ER L QF + R
Sbjct: 237 NYDNPDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKR 284
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/372 (52%), Positives = 259/372 (69%), Gaps = 13/372 (3%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQ 367
YG P + P Q
Sbjct: 421 YGCGP--VTPTQ 430
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/376 (53%), Positives = 266/376 (70%), Gaps = 23/376 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV FE +ESA +I+K+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN + DE LK++F +YGTITS VM DGKS+ FGFV FEN
Sbjct: 174 ELGEKAKLFTNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIK-DGKSRGFGFVAFENP 232
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ LNGK+ + + YVG+AQKK+ER+ ELK +FEQ E + ++QG+NLY+KN
Sbjct: 233 ESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKN 292
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ FS FGTITS KVM + G SKG GFV FS EEA++A+ EMNG+++
Sbjct: 293 LDDSIDDERLRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVG 351
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 357
SKPLYVA+AQRKE+R+A L +Q+ Q MR MG ++ PG +G G
Sbjct: 352 SKPLYVALAQRKEDRKAHLASQYMQRMANMRMQHMG-------QIFQPGGNG-------G 397
Query: 358 QAPPAIIPPQAGFGYQ 373
P + PQ F Q
Sbjct: 398 YYVPTLPQPQRFFSKQ 413
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 167/290 (57%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 62 TMNFDLIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V +D G SK +GFV+FE + A ++E +NG + ++ YVG+ + ERE+EL
Sbjct: 118 SCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN GD ++DE LKE+F ++GTITS +VM G S+G GF
Sbjct: 177 --EKAKLFT-------NVYVKNFGDELNDETLKEMFEKYGTITSHRVM-IKDGKSRGFGF 226
Query: 280 VAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF PE A A+ E+NGK + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 227 VAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLK 276
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 81/155 (52%), Gaps = 19/155 (12%)
Query: 401 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 460
GQ+ GG Q P+ P + A Y +NM++ P A M PV
Sbjct: 489 GQQAGG---------NMQARPVAPQMAANQARAANYKYTQNMRNPPAQ--AVPMAAQPVA 537
Query: 461 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
A V P+TA + LA A P +Q+ +LGE L+PL+E L A K+TGML
Sbjct: 538 QQA------VHVKGQEPLTA--SMLAAAQPAEQKQMLGERLFPLIEPLYPTIAGKITGML 589
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
LE+D +E++H+LE E+LKAKV EA+ VL + Q+
Sbjct: 590 LEIDNSELVHMLEHSESLKAKVDEAVAVLHAHQQK 624
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/324 (57%), Positives = 247/324 (76%), Gaps = 4/324 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKS+ FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NG + + + +VG+AQKK+ER+ ELK +FE +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L I + L E FS G + S +V RD + S G +V FS P +A RAL
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 72 MNFDVVKGKPIRIMWSQR 89
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 228/567 (40%), Positives = 326/567 (57%), Gaps = 55/567 (9%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD L F + K RIM+S RDPS+RK GTGN+FIKNL ID+K L+DTFS+FG
Sbjct: 114 AEHALDTLAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGK 173
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCKIATD G SKGFGFV +++ ESA+ AI+ +NGML+N+ +V+V + +++RE+
Sbjct: 174 ILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKM 233
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ F NV+VKN T++ L+++F YG +TS + D +GK++ FGFVNFE+ +
Sbjct: 234 QEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXE 293
Query: 185 AAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AAKAV+ALN K+ + R YVG+AQKK ERE+ L+ Q++QA +E + K+QG+NL++KNL
Sbjct: 294 AAKAVDALNEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLD 353
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D+IDD KLKE F+ +G ITS KVM + +G S+G GFV ++ PEEA+RA+ EM+ +M++ K
Sbjct: 354 DTIDDTKLKEEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGK 413
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQ---QFLYGQAP 360
PLYVA+AQRKE R +L QF Q + + + G+GQ YGQ
Sbjct: 414 PLYVALAQRKEVRHNQLSQQFQQRNQMRLQQAAVQ---------GGMGQFVAPMFYGQNA 464
Query: 361 PAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPL 420
IPP + G+R GAP P + Q RPG Q +
Sbjct: 465 -GFIPP---------MPAGVR--GAPFAGNGAPQMMMQQGASRPG------------QGV 500
Query: 421 PIMPHQ--MPPRGH---AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG-- 473
P+ P Q + P G Y P+ Q + AG ++ G
Sbjct: 501 PVSPGQFRVGPNGQPVPMYMQPMFNEYQQQQQQQQRYYQRQNHGNAPAGAEKKGDKPGEE 560
Query: 474 QPMPITALSTA-----LANASPEQQRTLLGESLYPLVEQL----ERDAAAKVTGMLLEMD 524
Q TA+++A L +PEQQ+ LGE LY +E +++A K+TGM+L MD
Sbjct: 561 QEAAATAVNSASLADFLPKLAPEQQKRALGEELYAKIEATGKASDKEAVGKITGMMLSMD 620
Query: 525 QTEVLHLLESPEALKAKVAEAMEVLRS 551
++L +L+ + +A+ S
Sbjct: 621 NKQILDMLKDDALFNTQFQQALSAYES 647
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAV 189
F +++V +LD S T+ DL +IF + G ++S V RB KS C+ +VN++ ++A A+
Sbjct: 59 FASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHAL 118
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ L ++ + +Q+ ++ G N++IKNL ID++
Sbjct: 119 DTLAFCDIKGKQCRIMWSQRDPSMRKKGTG----------------NVFIKNLHPDIDNK 162
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
L + FS FG I SCK+ D G SKG GFV + E A A+ +NG ++ + +YVA
Sbjct: 163 TLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAP 222
Query: 310 AQRKEERRARLQ 321
+++R +++Q
Sbjct: 223 HIPRKDRESKMQ 234
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/391 (52%), Positives = 265/391 (67%), Gaps = 21/391 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + NK IRIM+S RDPS+R+SG GN+FIKNLDK ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E DE LK+ F YG ITS VM DGKSK FGFV +E
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ K+ D G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ FS +GTITS KVM D G SKG GFV F +P EA+ A+ E+NG++I
Sbjct: 294 LDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRKEER+A L +Q+ MR + G + M+ P +G G P
Sbjct: 354 SKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLGQMFQPNTTG-------GFFVP 403
Query: 362 AIIPPQAGFGYQQ--------QLVPGMRPAG 384
I P Q FG Q + P +RPA
Sbjct: 404 TIPPSQRFFGPQMTTQMRNAPRWAPQVRPAA 434
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 165/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + I+ L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI +K + + +R+ ++ NVF+KNLD+ ++ + F +G I
Sbjct: 62 TMNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VA+ T E A A+ +NGK M SK LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELKRKFEELK 277
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 57/70 (81%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LANA+P++Q+ +LGE LYP++E++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 562 IASLLANANPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDKEALKA 621
Query: 541 KVAEAMEVLR 550
KV EA+ VL+
Sbjct: 622 KVEEAVAVLQ 631
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 233/533 (43%), Positives = 319/533 (59%), Gaps = 62/533 (11%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFV 86
M+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG ILSCK+ATD GQSK FGFV
Sbjct: 1 MWSQRDPSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFV 60
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTT 144
+E E+A+ AI+ +NGML+ND++V+VG + K++RE+ +K + N++VKN+D +
Sbjct: 61 HYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFS 120
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
DE+ +K+F +GTITS + +D DGKSK FGFVN+E + A KAVE LN K+ + ++ YV
Sbjct: 121 DEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYV 180
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
G+AQKK ER +ELK Q+E E + K+QG+NL++KNL DSID EKL+E F FG+ITS
Sbjct: 181 GRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSA 240
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
KVM D +G SKG GFV FS+PEEA++A+ EMN +MI+ KPLYVA+AQRK+ RR++L+ Q
Sbjct: 241 KVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQI 300
Query: 325 ---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP--- 378
+QMR S G P IPP F QQ P
Sbjct: 301 QARNQMRMQNAAAS---------------------GGIPGQFIPPM--FYGQQGFFPPNG 337
Query: 379 -GMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP 437
G P P P ++ +GQQ P GP QP+P+ + +PP+ +
Sbjct: 338 RGNAPFPGPNPQM---MMRRGQQFPGPEQWPRPGP---NGQPVPV--YGIPPQFQDFNGQ 389
Query: 438 LGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 497
R Q G P R+ + G L+ +ANA P+QQ+ +L
Sbjct: 390 PMRQQQ-----------------RGGYYPNRNQNKGGRQQ-KDLAAIIANAPPDQQKRIL 431
Query: 498 GESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
GE LYP + + E +AA K+TGM+L ++ E+L LLE E +A+
Sbjct: 432 GEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLEDDELFNNHFEDAL 484
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/391 (52%), Positives = 265/391 (67%), Gaps = 21/391 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + NK IRIM+S RDPS+R+SG GN+FIKNLDK ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV FE +E+A +ID++NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E DE LK+ F YG ITS VM DGKSK FGFV +E
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ K+ D G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ FS +GTITS KVM D G SKG GFV F +P EA+ A+ E+NG++I
Sbjct: 294 LDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRKEER+A L +Q+ MR + G + M+ P +G G P
Sbjct: 354 SKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLGQMFQPNTTG-------GFFVP 403
Query: 362 AIIPPQAGFGYQQ--------QLVPGMRPAG 384
I P Q FG Q + P +RPA
Sbjct: 404 TIPPSQRFFGPQMTTQMRNAPRWAPQVRPAA 434
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 165/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + I+ L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI +K + + +R+ ++ NVF+KNLD+ ++ + F +G I
Sbjct: 62 TMNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VA+ T E A A+ +NGK M SK LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELKRKFEELK 277
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 57/70 (81%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LANA+P++Q+ +LGE LYP++E++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 562 IASLLANANPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDKEALKA 621
Query: 541 KVAEAMEVLR 550
KV EA+ VL+
Sbjct: 622 KVEEAVAVLQ 631
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/362 (54%), Positives = 253/362 (69%), Gaps = 13/362 (3%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L NK IRIM+S RDPS+R+SG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVATDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E DE LK+ F YG ITS VM DGKSK FGFV FE
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ K+ D G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L + FS +GTITS KVM D G SKG GFV F + EA+ A+ E+NG+++
Sbjct: 294 LDDSIDDERLCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQF----SQMRPVAMGPSVPPR------MPMYPPGPSGLG 351
SKPLYVA+AQRKEER+A L +Q+ + MR +G PP +P PP G
Sbjct: 354 SKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIFPPNAAGGFFVPTMPPNQRFFG 413
Query: 352 QQ 353
Q
Sbjct: 414 PQ 415
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 164/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + I+ L D FSS G +LS ++ D S +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N L+ +K + + +R+ ++ NVF+KNLD++ ++ + F +G I
Sbjct: 62 TMNFDLLRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVATDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 8/86 (9%)
Query: 473 GQPMP--------ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 524
QPMP +++ LANA P++Q+ +LGE LYP++E++ A K+TGMLLE++
Sbjct: 545 AQPMPPQLQGKNSEKLIASLLANAKPQEQKQILGERLYPMIERMHPSLAGKITGMLLEIE 604
Query: 525 QTEVLHLLESPEALKAKVAEAMEVLR 550
+E+LH++E EALKAKV EA+ VL+
Sbjct: 605 NSELLHMIEDQEALKAKVEEAVAVLQ 630
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/392 (51%), Positives = 266/392 (67%), Gaps = 21/392 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + NK IRIM+S RDPS+R+SG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD G SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E DE LK+ F YG ITS VM DGKSK FGFV +E
Sbjct: 174 ELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ K+ + G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ FS +GTITS KVM D G SKG GFV F +P EA+ A+ E+NG+++
Sbjct: 294 LDDSIDDERLRKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRKEER+A L +Q+ MR + G + ++ P + G P
Sbjct: 354 SKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLGQLFQPNTAS-------GFFVP 403
Query: 362 AIIPPQAGFGYQQ--------QLVPGMRPAGA 385
+ P Q FG Q + MRPA A
Sbjct: 404 TMAPSQRFFGPQMTTQMRSTPRWAQQMRPATA 435
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 165/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + I+ L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI +K + + +R+ ++ NVF+KNLD++ ++ + F +G I
Sbjct: 62 TMNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VA+ T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/324 (56%), Positives = 246/324 (75%), Gaps = 4/324 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK++F +YG S VM D GKS+ FGF+++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE +NG + + + +VG+AQKK ER+ ELK +FE +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 169/289 (58%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L++ FS G +LS ++ D + +S G+ +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N ++ K + + +R+ K+ NVF+KNLD+S ++ L F +G I
Sbjct: 71 TMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK + FV+FE D A +A+E +NG +DR+ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ ++ N+YIKN GD ++DE+LKELF ++G S KVM DP+G S+G GF
Sbjct: 186 KAKEFT----------NVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGF 235
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+++ E+A++A+ +MNG + K ++V AQ+K ER+A L+ +F ++
Sbjct: 236 ISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLK 284
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LES E+L++KV
Sbjct: 536 SMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKV 595
Query: 543 AEAMEVLRS-VAQQQANNPADQLA 565
EA+ VL++ A++ A A LA
Sbjct: 596 EEAVAVLQAHQAKKDATQKAGNLA 619
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 214/426 (50%), Positives = 279/426 (65%), Gaps = 46/426 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ K RIM+S RDPS+RK G GNIFIKNL++ ID+KAL DTFS FGNIL
Sbjct: 103 QAIEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFGNIL 162
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A AID LNGML+N ++++V L ++ER++ +
Sbjct: 163 SSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEE 222
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK F NV+VKN+D TTDE+ K+ FG+ GT+TS + R DGK K FGFVN+E+ +DA
Sbjct: 223 TKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAV 282
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNG +F D+E +VG+AQKK ER Q LK Q+E E + K+QG+NL++KNL DSI
Sbjct: 283 KAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSI 342
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ FG ITS KVMR +G SKG GFV FS+PEEA++A+ E N +++ KPLY
Sbjct: 343 DDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLY 402
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 403 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPPMFYG-VMPPRGVP 461
Query: 342 MYPPGPSGLG----QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 397
P P + QQF G P +PPQ G Q P R AGA F+
Sbjct: 462 FNGPNPQQMNGVPPQQFRNG--PMYGMPPQ---GAPQGAFP--RNAGANANQFY------ 508
Query: 398 GQQGQR 403
QQ QR
Sbjct: 509 -QQKQR 513
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 191
+++V LD S ++ L +F G++ S V RD K+ + +VNF + + +A+E
Sbjct: 48 SLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIEK 107
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + +Q+ ++ G N++IKNL ID++ L
Sbjct: 108 LNYTPIKGKLCRIMWSQRDPSLRKKGHG----------------NIFIKNLNQDIDNKAL 151
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I S K+ D +G SKG GFV F A+ A+ +NG ++ + +YVA
Sbjct: 152 FDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHL 211
Query: 312 RKEERRARLQ 321
++ER ++L+
Sbjct: 212 TRKERDSQLE 221
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 23/139 (16%)
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
P+ MPPRG + P + M P F G +P PR
Sbjct: 449 PMFYGVMPPRGVPFNGPNPQQMNGVPPQQFRNGPMYGMPPQGAPQGAFPR---------- 498
Query: 478 ITALSTALANASP---EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLL 532
A ANA+ ++QR LGE LY + + + +AA K+TGM+L++ EV+ LL
Sbjct: 499 -----NAGANANQFYQQKQRQALGEQLYKKISAKTSDEEAAGKITGMILDLPPQEVVSLL 553
Query: 533 ESPEALKAKVAEAMEVLRS 551
E+ + + EA S
Sbjct: 554 ENDDLFEQHFTEASAAYES 572
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 263/367 (71%), Gaps = 8/367 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L NK IRIM+S RDPS+R+SG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD G SKG+GFV FE +E+A NAI+K+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVATDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN + DE LK++F YG ITS VM DGKSKCFGFV FE
Sbjct: 174 DLGEKAKLFTNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AVEALNGK D + YV +AQKK+ER+QELK +FE+ K+ + G+NLY+KN
Sbjct: 234 EAAEAAVEALNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE+L++ FS FGTITS KVM D G SKG GFV F P EA+ A+ EMNG+++
Sbjct: 294 LDDTIDDERLRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPS-GLGQQFLY 356
SKPLYVA+AQRKE+R+A L +Q+ + MR +G P P P+ G GQ+F
Sbjct: 354 SKPLYVALAQRKEDRKAHLASQYMRHMAGMRMQQIGQMFQPNTPGNFFVPTMGPGQRFFG 413
Query: 357 GQAPPAI 363
Q P A+
Sbjct: 414 PQVPTAM 420
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + I+ L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N L+ +K + + +R+ ++ NVF+KNLD++ ++ + F +G I S
Sbjct: 63 MNFDLLRNKPIRI----MWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILS 118
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G SK +GFV+FE + A A+E +NG + ++ YVGK + ERE++L
Sbjct: 119 CKVATDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLG-- 176
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
E+A T N+Y+KN GD +DDEKLKE+F +G ITS KVM G SK GFV
Sbjct: 177 -EKAKLFT-------NVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFV 228
Query: 281 AFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
AF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 229 AFETTEAAEAAVEALNGKDMGDGKALYVARAQKKAERQQELKRKFEELK 277
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
Q P L++ LANA+P++Q+ +LGE LYP++E + A K+TGMLLE++ +E+LH++E
Sbjct: 568 QKGPEKLLASMLANANPQEQKQILGERLYPIIELAHPNMAGKITGMLLEIENSELLHMIE 627
Query: 534 SPEALKAKVAEAMEVL 549
EALKAKV EA+ VL
Sbjct: 628 DQEALKAKVEEAVAVL 643
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/380 (52%), Positives = 264/380 (69%), Gaps = 15/380 (3%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + NK IRIM+S RDPS+R+SG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD G SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV++KN + DE LK+ F YG ITS VM DGKSK FGFV +E
Sbjct: 174 ELGEKAKLFTNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ K+ + G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ FS +GTITS KVM D G SKG GFV F +P EA+ A+ E+NG+++
Sbjct: 294 LDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
SKPLYVA+AQRKEER+A L +Q+ MR + G + ++ P + G P
Sbjct: 354 SKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLGQLFQPNAAS-------GFFVP 403
Query: 362 AIIPPQAGFGYQQQLVPGMR 381
+ P Q FG Q+ P MR
Sbjct: 404 TMAPSQRFFG--PQMTPQMR 421
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 165/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + I+ L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N L+ +K + + +R+ ++ NVF+KNLD++ ++ + F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+YIKN D DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VA+ T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQELKRKFEELK 277
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 56/70 (80%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LANA P++Q+ +LGE LYP++E++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 567 IASLLANAKPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDQEALKA 626
Query: 541 KVAEAMEVLR 550
KV EA+ VL+
Sbjct: 627 KVEEAVAVLQ 636
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 241/574 (41%), Positives = 342/574 (59%), Gaps = 66/574 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+SHRDP +R+SG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILS K+ + G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF +Q+RE
Sbjct: 123 GSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A F N++VKNL ++ L+ +F ++G S VMRD +G+S+ FGF+NFE
Sbjct: 182 ELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG+NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI+D++LKE+FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSINDDRLKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV-PPRMPMYPPGPSGLGQQFLYGQAPP 361
KPLYVA+AQRKEER+A L Q+ + ++ S P + P Q Y A
Sbjct: 361 KPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQSTTQTMYYSSASI 420
Query: 362 AIIPPQAGFGYQQQLVPGMRP---------AGAPMPNFF----------VP----VVSQG 398
A + P + Q P + AP P VP VV+ G
Sbjct: 421 APMQPDPRWTAQPHGPSSTCPPAASVVQPLSTAPHPCIHLSSASQASSQVPHTQRVVNIG 480
Query: 399 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 458
Q PGG P Q P++ H+ H+ +Q+ S + VP
Sbjct: 481 TQTTGPGGEGSCIPGQ------PLLAHRGSSAVHS-----AHGVQE--------STVYVP 521
Query: 459 VDMGAGIPRRDASVGQPMPITALSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVT 517
QP+ ++ L +A+P +Q+ ++GE LY L+ K+T
Sbjct: 522 GH-------------QPLTVSML-----DAAPLHEQKQMIGERLYSLIHDACAPLTGKIT 563
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
GMLLEMD E+L LLESPE+L AK+ EA+ VL++
Sbjct: 564 GMLLEMDNLELLLLLESPESLHAKIEEAVAVLKA 597
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E+FS GTI S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +MI +P+ + + R
Sbjct: 72 MNFEMIKGQPIRIMWSHR 89
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 249/352 (70%), Gaps = 7/352 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GNIFIKNLDKSID+KA++DTFS F
Sbjct: 71 ADAERALDTMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMF 130
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--QER 122
GNILSCK+A D SKG+GFV FE +ESAQ AI+K+NGML+ K+V+VG F + + R
Sbjct: 131 GNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMR 190
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E +F NVF+KN + E L+K+F ++G ITS VM D DGKSK FGFV FEN
Sbjct: 191 EMGETARRFTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENP 250
Query: 183 DDAAKAVEALNGKKFDD--REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+DA KAV ++ + D R+ YV +AQKK+ER ELK ++EQ E + ++QG+NLY+K
Sbjct: 251 EDAEKAVNEMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVK 310
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D++DDE L++ F +G ITS KVM D +G SKG GFV F P+EA++A+ EMNGKM+
Sbjct: 311 NLDDTVDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMM 370
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP--MYPPGPSGL 350
+KPLYVA+AQRKE+R+A+L +Q+ Q R ++ MP MY PG G
Sbjct: 371 CTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGAMPGTMYTPGNGGF 421
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 166/290 (57%), Gaps = 17/290 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ K + + +R+ ++ N+F+KNLD+S ++ + F +G I S
Sbjct: 80 MNFDVMYGKPIRIMW----SQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILS 135
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D + SK +GFV+FE + A KA+E +NG + ++ YVGK Q ++ R +E
Sbjct: 136 CKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMRE---- 191
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
M ET +F N++IKN D +D EKL++LF++FG ITSC VM D G SKG GFV
Sbjct: 192 ----MGETARRF--TNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFV 245
Query: 281 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMR 328
AF PE+A +A+ EM+ + + LYV AQ+K ER A L+ ++ Q +
Sbjct: 246 AFENPEDAEKAVNEMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQK 295
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/424 (49%), Positives = 275/424 (64%), Gaps = 33/424 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LN++ + K RIM+S RDP++RKSG GN+FIKNLDK+ID+KAL DTFS+FGN
Sbjct: 99 AERALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGN 158
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-ETV 125
ILSCK+ TD +G SKG+GFV +E +E+A+ AI K+NGM+IN KQVFVG F+ ++ER E
Sbjct: 159 ILSCKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVELG 217
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADD 184
TKF NVFVKNL E TTD L +F ++G ITS V+M+ D KSK FGFV +E +D
Sbjct: 218 EGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVED 277
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A AV ALNG + + +V +AQKK+ERE ELK +++ E ++K+QG+NLY+KNL D
Sbjct: 278 AQAAVNALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDD 337
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VS 302
+ID++K++ F+ FGTITS K+MRD G S+G GF+ FS+ EEA++A+ EMNG+ I
Sbjct: 338 AIDEDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFP 397
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVA---MGPSVPPRM-PMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQR E+RRA+L A F+Q R M V M P Y GP Q F G
Sbjct: 398 KPLYVALAQRAEDRRAQLAAHFAQQRGNMGGRMAGGVIAGMPPQYMAGP----QMFYAG- 452
Query: 359 APPAIIPPQAGFGYQQQLV-PGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 417
+P G Y Q ++ G PA P+ G G R G GP
Sbjct: 453 -----VPQNRGMVYPQNVMRRGAWPANVPV-------------GVAAGARPGFGPFMAVP 494
Query: 418 QPLP 421
Q +P
Sbjct: 495 QGVP 498
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 20/186 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L +IF G + S V RD +S + +VNF A DA +A++
Sbjct: 46 SLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDT 105
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 250
LN + + +Q+ + A++++ GL N++IKNL +ID++
Sbjct: 106 LNYSLIRGKPCRIMWSQR------------DPAVRKS-----GLGNVFIKNLDKTIDNKA 148
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I SCKV+ D +G SKG GFV + T E A A+A++NG +I K ++V +
Sbjct: 149 LLDTFSAFGNILSCKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIF 207
Query: 311 QRKEER 316
++ER
Sbjct: 208 VPRKER 213
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 251/350 (71%), Gaps = 9/350 (2%)
Query: 4 LSSAARALDVLNFTPL---NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
+ A RAL+ +NF +K +R+M+ +RDP+IRKSG GN+FIKNLDK+ID+K L DT
Sbjct: 128 MDDAERALETMNFYACPQTRDKPMRLMWKNRDPTIRKSGAGNVFIKNLDKAIDNKTLFDT 187
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
FS FGNILSCK+ATD G S G+GFV FEN E A+ AI+K+NGML+NDKQV+VG+F +Q
Sbjct: 188 FSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLNDKQVYVGYFKSRQ 247
Query: 121 ERETVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 179
ERE F NV+ KNL S T+E ++++F YG ITS V D + K F FVNF
Sbjct: 248 EREASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNF 307
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ AAKAVE LNG+ F+ + YVG+AQKK+ERE EL+ + E E + K+QG+NLY+
Sbjct: 308 AKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAEILKKYQGVNLYV 367
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
+NL D +D+E L++ FS FGT+TSC+VMRD G+S+G GFV FSTPEEA++A+ EMNGKM
Sbjct: 368 RNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKM 427
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP--MYP-PG 346
+ KPLYV +AQRKE R+A+L+AQ ++ A G +P +P +YP PG
Sbjct: 428 MGKKPLYVCLAQRKEIRQAQLEAQ--RIAAAAGGLRIPGAVPGSLYPQPG 475
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 181
ET A ++V +L + +L ++F G + S V RD +S + +VNF +
Sbjct: 68 ETNAPSVSSATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTRRSLGYAYVNFHS 127
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
DDA +A+E +N +Y R++ ++ ++ T+ K N++IKN
Sbjct: 128 MDDAERALETMN--------FYAC----PQTRDKPMRLMWKN-RDPTIRKSGAGNVFIKN 174
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L +ID++ L + FS FG I SCKV D G S G GFV F PE+A A+ ++NG ++
Sbjct: 175 LDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLN 234
Query: 302 SKPLYVAVAQRKEERRA 318
K +YV + ++ER A
Sbjct: 235 DKQVYVGYFKSRQEREA 251
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 437 PLGRNMQDFPFDMGAGSMLPV-------PVDMGAGIPRRDASVGQPMPITALS--TALAN 487
P+ N Q F + M A + PV P DM ++ + ++ S L N
Sbjct: 645 PMQLNGQQFKYTMNARNAAPVMNQERVNPEDMSQEQRQQQQARQADNATSSASLIALLTN 704
Query: 488 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 547
ASPEQQ+ +LGE LYPL+ + + A K+TGMLLEMD +EVLHL+ESP+AL K+ EA+
Sbjct: 705 ASPEQQKQILGERLYPLIYERQPGLAGKITGMLLEMDNSEVLHLIESPDALSEKIEEALA 764
Query: 548 VLRSVAQQQ 556
VLR+ A+QQ
Sbjct: 765 VLRAHAEQQ 773
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/501 (44%), Positives = 304/501 (60%), Gaps = 46/501 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GN+FIKNLD+SID+KAL+DTFSSF
Sbjct: 54 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+ D +G SKGFGFV +E+ ESAQ AI+K+NGML+ DK+VFV F + +R
Sbjct: 114 GNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMR 172
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFEN 181
E F N+FVKNL +S + L + F ++G + S V+ + G SKC GF++F+
Sbjct: 173 EFGDAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKE 232
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
D A AVE ++ K+ + ++ Y G+AQKK+ER ELK ++E+ +E + ++QG+NLY+KN
Sbjct: 233 HDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKN 292
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE L+E F +FG ITS KV+ D +G SKG GFV FS+PEEA++A+ EMNG++
Sbjct: 293 LDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFG 352
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
KPLYV +AQRKE+R+A LQ Q+ M+ V+ G + M G + Q F Q P
Sbjct: 353 GKPLYVGLAQRKEDRKAHLQQQY--MQRVSTGIRMQAFM-----GNQVVNQNF---QPPR 402
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
I+P G Q M P G PM R A P Q+ Q P
Sbjct: 403 YILPTMQGQPVQ------MFPQGTPMVR---------------ATPRWAPPNQRVQMPGM 441
Query: 422 IMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 480
I G +R P RN+Q P ++ + M +P ++ G P T
Sbjct: 442 IRGRMAQQGGPQFRLTPSVRNVQ-IPSEV---------IQMPPQMPHQNQPAGDQAPETL 491
Query: 481 LSTALANASPEQQRTLLGESL 501
S+ LANA+P++Q+ +LGE L
Sbjct: 492 TSSMLANANPQEQKQMLGERL 512
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 163/290 (56%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L+D F + G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + + +R+ ++ NVF+KNLD S ++ L F +G I
Sbjct: 62 TMNFDVIKGKPIRIMW----SQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK FGFV++E+ + A +A+E +NG +D++ +V + + +++R +E
Sbjct: 118 SCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMRE--- 173
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSG 278
F A K NL++KNL DS D + L E F +FG + S KV+ D +G+SK G
Sbjct: 174 -FGDAAKHFT------NLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHG 226
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F++F ++A A+ M+ K I K LY AQ+K ER + L+A++ +++
Sbjct: 227 FISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIK 276
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/396 (49%), Positives = 262/396 (66%), Gaps = 11/396 (2%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
S A++ LN++P+ K RIM+S RDP++RK G GNIFIKNL ID+KALHDTFS FG
Sbjct: 103 SGRTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFG 162
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
NILSCKIATD +G+SKGFGFV FE +A A+D +NGM++N ++V+V + K++RE+
Sbjct: 163 NILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESK 222
Query: 126 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+K F NV+VKN+D T +++ +F +YG ITS + +D +GK + FGF+NFEN D
Sbjct: 223 LEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHD 282
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DAAKAVE LN +F ++ YVG+AQKK ER QELK Q+E + E + K+QG+NL++KNL
Sbjct: 283 DAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLD 342
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDDEKL+ F+ FG+ITS KVMR+ G SK GFV FSTPEEA++A+ E N +++ K
Sbjct: 343 DSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIVAGK 402
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRK+ RR++L Q + + P Q YG PP
Sbjct: 403 PLYVAIAQRKDVRRSQLAQQIQARNQLRYQQATAAAAAAAAGMPGQFMQPMFYGVMPPRG 462
Query: 364 IP---PQAGFGY--QQQL----VPGMRPAGAPMPNF 390
+P P + G +QQ V G+ P GAP NF
Sbjct: 463 VPFNGPNSPMGAVPRQQFRNGPVYGVPPQGAPQGNF 498
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 17/196 (8%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDA 185
+ T +++V LD S ++ L IF G +TS V RD K+ + +VNF + +
Sbjct: 45 VDTTSASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESG 104
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A+E LN + + +Q+ ++ G N++IKNL
Sbjct: 105 RTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAG----------------NIFIKNLHPD 148
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
ID++ L + FS FG I SCK+ D +G SKG GFV F A A+ +NG M+ + +
Sbjct: 149 IDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREV 208
Query: 306 YVAVAQRKEERRARLQ 321
YVA K++R ++L+
Sbjct: 209 YVAQHVSKKDRESKLE 224
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+D A K VE L ++ E A SE E +A VD +LY+
Sbjct: 2 SDIADKTVEQLEKLNINETEG----APAASETEGTPAASETEANNSNVDT-TSASLYVGE 56
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI 300
L S+ + L ++FS G +TS +V RD + S G +V F+ E A+ ++N I
Sbjct: 57 LDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIEKLNYSPI 116
Query: 301 VSKPLYVAVAQR 312
KP + +QR
Sbjct: 117 KGKPCRIMWSQR 128
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 491 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 507 QKQRQALGEELYKRVSSKTSDEEAAGKITGMILDLPPQEVMPLLENDELFEQHFNEASAA 566
Query: 549 LRS 551
S
Sbjct: 567 YES 569
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/474 (44%), Positives = 289/474 (60%), Gaps = 71/474 (14%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S +AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++F
Sbjct: 111 SDGEKALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAF 170
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV +E E+AQ AI +NGML+N+K+V+VGH + K++R++
Sbjct: 171 GNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 230
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F N++VKN++ +D++ +++F YG ITS+ + RD DGKS+ FGFVN+
Sbjct: 231 KFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTH 290
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A KAV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E K+QG+NLYIKNL
Sbjct: 291 ESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNL 350
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRD-PS------------------------------ 271
D +DDEKL+ +FSEFG ITS KVMRD PS
Sbjct: 351 DDDVDDEKLRHMFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSE 410
Query: 272 -------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
G SKG GFV FS P++A++A+AEM+ +MI KPLYVA+AQRK+ R+++L+A
Sbjct: 411 KKGDKKFGKSKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKDVRKSQLEASI 470
Query: 325 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG--YQQQLVP 378
+ M + P+ M PP YGQ P + PQ G G + Q P
Sbjct: 471 QARNQLRMQQAAAAAGMPQQYMQPP--------VFYGQQPGFM--PQGGRGMPFPQ---P 517
Query: 379 GMRPAGAPMPNFFVPVVSQGQQGQRPG--GRRGAGPVQQTQQPLPIMPHQMPPR 430
GM AG V G+ GQ PG + G G V Q P MP Q PP+
Sbjct: 518 GMGMAG----------VQGGRPGQFPGYPQQGGRGGVPQQMPPNMYMPGQFPPQ 561
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKAL 117
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 118 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A +A++ +NG ++++ YVG K +R+ +
Sbjct: 174 LSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 233
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ D++ +ELF +G ITS + RD G S+
Sbjct: 234 EMKANF-------------TNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSR 280
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV ++T E A +A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 281 GFGFVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
+ L L++A P QQ+ +LGE ++P ++ + + A K+TGMLLEMD TE++ L+E AL
Sbjct: 644 SILQQQLSSAPPAQQKQILGEVIFPKIQAINAELAGKITGMLLEMDNTELISLIEDDAAL 703
Query: 539 KAKVAEAMEVLRSVAQQQANNPAD 562
KAKV EA+ V + Q A+
Sbjct: 704 KAKVEEALAVYDEYVKSQGTEQAE 727
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/324 (56%), Positives = 243/324 (75%), Gaps = 4/324 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/345 (53%), Positives = 249/345 (72%), Gaps = 4/345 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+R+SG GNIF+KNLDKSI++K L+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+ D +G SKG+GFV FE E+A+ AI+K+NG L+ND++VFVG F ++ERE +
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAEL 183
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKVKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
LYVA+AQRKE+R+A L ++ Q P P P PSG
Sbjct: 363 LYVALAQRKEDRQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSG 407
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 176/298 (59%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + +S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K V + +R+ ++ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + V +F N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAK--------VKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 61/83 (73%)
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
T ++ LA+A P++Q+ +LGE L+P ++ + A K+TGMLLE+D +E+LH+LESP++L
Sbjct: 544 TLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPQSL 603
Query: 539 KAKVAEAMEVLRSVAQQQANNPA 561
++KV EA+ VL++ ++A A
Sbjct: 604 RSKVDEAVAVLQAHQVKEATQKA 626
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P++A AL MN +I KP+ + +QR
Sbjct: 61 HPKDAEHALDTMNFDVIKGKPVRIMWSQR 89
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/359 (50%), Positives = 255/359 (71%), Gaps = 14/359 (3%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+TP+ K RIM+S RDP++RK+ GNIFIKNLD+SID+KALHDTF++FGNIL
Sbjct: 35 RALEQLNYTPIKGKPCRIMWSQRDPALRKTSLGNIFIKNLDESIDNKALHDTFAAFGNIL 94
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A+ AI +NGML+NDK V+VGH + ++ER+
Sbjct: 95 SCKVALDENGLSKGYGFVHYEGGEAAEAAIQAVNGMLLNDKVVYVGHHVPRRERQAKIDE 154
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+++ + N++VK L ++ + ++F +YG +TSAV+ D DGKSK FGFVNF + + AA
Sbjct: 155 VRSNYTNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAA 214
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KA+ L+ + + YV +AQKK ERE+ELK +EQ + K+QG+NLY+KNL D +
Sbjct: 215 KALTELHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDM 274
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+EK+ F+ FGTITS K+MRD G SKG GFV FS+P+EA++A+ E+NGKM KPLY
Sbjct: 275 DEEKVTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLY 334
Query: 307 VAVAQRKEERRARLQAQFS---QMRPVAMGPS-VPPRMP--------MYPPGPSGLGQQ 353
V++AQRK+ R+ +L+AQ + Q+R + S +PP MP MY PGP G QQ
Sbjct: 335 VSLAQRKDVRKQQLEAQLAQRNQIRSQQLAASGIPPNMPPYGMPPNQMYYPGPGGYPQQ 393
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/316 (56%), Positives = 241/316 (76%), Gaps = 6/316 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LN+T + + RIM+SHRDPSIRKSG GNIFIKNLDKSID+KAL+DTFS+FGN
Sbjct: 64 AERALDTLNYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGN 123
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ TDG G SKG+GFV +E E+A +AI K+NG ++N K V+VG F+ ++ER +
Sbjct: 124 ILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTPGS 183
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF N+++KNL E+ T+EDLK+ FG +GT+ SAV+M+D + F FVNFE+ + A
Sbjct: 184 DPEKFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAH 243
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+A E LNG+K D+E YVG+AQKKSERE L+ + +E K+QG+NLYIKNL D++
Sbjct: 244 RATEELNGRKLGDKEVYVGRAQKKSERESFLR----KLREERAQKYQGINLYIKNLDDTV 299
Query: 247 DDEKLKELFSE--FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+DE+L +LFS FG ITSCKVM D G S+G GFV ++ PE+AS+A++EMNGKM+ +KP
Sbjct: 300 NDEELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKP 359
Query: 305 LYVAVAQRKEERRARL 320
+YVA+A+RK+ R A+L
Sbjct: 360 IYVALAERKDVRSAKL 375
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 152/285 (53%), Gaps = 21/285 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +L+ ++ L + F + G + S ++ D + +S G+ +V F N A+ A+
Sbjct: 9 SASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERAL 68
Query: 99 DKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
D LN LI + ++ H R+ K+ N+F+KNLD+S ++ L F +G
Sbjct: 69 DTLNYTLIKGRPCRIMWSH------RDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFG 122
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
I S V+ DG G SK +GFV++E ++ A A+ +NGK + + YVG+ + ER
Sbjct: 123 NILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTP- 181
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
+KF N+YIKNLG++ +E LK F FGT+ S +M+DP I +
Sbjct: 182 ---------GSDPEKFT--NIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQ 230
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 321
FV F E A RA E+NG+ + K +YV AQ+K ER + L+
Sbjct: 231 FAFVNFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSERESFLR 275
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 494 RTLLGESLYPLVEQLERDAAA-KVTGMLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ ++GE+LYPLVE L K+TGMLLE MD TE+LHLL+SP+AL+ KV EA+ VL++
Sbjct: 389 KNIIGETLYPLVEALTSATQGPKITGMLLESMDVTELLHLLQSPDALREKVDEAVGVLKA 448
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
+Q +LY+ +L ++ + L E+F G + S +V RD + S G +V F +A R
Sbjct: 7 YQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAER 66
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL +N +I +P + + R
Sbjct: 67 ALDTLNYTLIKGRPCRIMWSHR 88
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/393 (49%), Positives = 279/393 (70%), Gaps = 19/393 (4%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + ++ RIM+S RDP++RK+G GNIFIKNLD+ ID+KALHDTF++FGN+L
Sbjct: 100 RALEQLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVL 159
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G+SKG+GFV +E E+A+ AI +NGML+NDK+V+VG+ + ++ER++
Sbjct: 160 SCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEE 219
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K +F N++VKN D T+E+ +F ++G++TSAV+ RD +G+S+ FGFVNFE D+A
Sbjct: 220 MKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQ 279
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE L+ F ++ +V +AQKK+EREQEL+ +EQA E + KFQG+NLYIKNL D +
Sbjct: 280 KAVEGLHDLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDL 339
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F FG+ITS KVMRD G SKG GFV FS+P+EA++A+AEMN KMI +KPLY
Sbjct: 340 DDDRLRTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLY 399
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM-------PMY----PPGPSGLGQQFL 355
V++AQR++ RR +L++Q +Q + M + + PMY P G G + +
Sbjct: 400 VSLAQRRDVRRQQLESQIAQRNQIRMQQAAASGLAGGYINGPMYYPPGPGGFPPQGGRGM 459
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMP 388
G P ++PP+ + Q VPGM P+P
Sbjct: 460 MGYGQPGMMPPRPRYAPNGQ-VPGM-----PLP 486
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 45 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 104
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 105 LNYSSIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 148
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 149 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHI 208
Query: 312 RKEERRARLQ---AQFSQMRPVAMGPSV 336
++ER+++L+ AQF+ + P V
Sbjct: 209 SRKERQSKLEEMKAQFTNIYVKNFDPEV 236
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/396 (50%), Positives = 270/396 (68%), Gaps = 36/396 (9%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDP++RK G+ NIFIKNL ID+KAL+DTFS FGNIL
Sbjct: 96 KAIEKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNIL 155
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE+ +A+ AID LNGML+N +++FVG L ++ER++ +
Sbjct: 156 SSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEE 215
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN++ TTDE+ ++F +YG + SA + + DGK K FGFV+FEN +DAA
Sbjct: 216 SKANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAA 275
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNG +F D+E +V +AQKK ER QELK Q+E + E + K+QG+NL+IKNL DSI
Sbjct: 276 KAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSI 335
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLKE F+ +G ITS +VMR +G S+G GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 336 DDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 395
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 396 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPPMFYG-VMPPRGVP 454
Query: 342 MYPPGPSGLG----QQF----LYGQAPPAIIPPQAG 369
P P + QQF +YG PP P+ G
Sbjct: 455 FNGPNPQQMNGVPPQQFRNAPVYGGMPPQGAFPRNG 490
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 158/295 (53%), Gaps = 19/295 (6%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 95
++ + ++++ +LD S+ L+D FS G++ S ++ D + S G+ +V F + E+ +
Sbjct: 36 ENSSASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGK 95
Query: 96 NAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
AI+KLN I G R +R+ K N+F+KNL ++ L F
Sbjct: 96 KAIEKLNYTPIK------GRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFS 149
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
+G I S+ + D GKSK FGFV+FE+ A +A++ALNG + +E +VG + ER
Sbjct: 150 VFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKER 209
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
+ +L +E+ F N+Y+KN+ DE+ ELFS++G + S + + G
Sbjct: 210 DSQL--------EESKANF--TNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGK 259
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
KG GFV F E+A++A+ E+NG + L+V+ AQ+K ER L+ Q+ R
Sbjct: 260 LKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASR 314
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
+Q+R LGE LY V + ++ +AA K+TGM+L++ +V+ LLE+ E EA
Sbjct: 499 QQKRQALGEQLYKKVSAKNVDEEAAGKITGMILDLPPQDVVSLLENDELFDQHFKEASAA 558
Query: 549 LRS 551
+S
Sbjct: 559 YQS 561
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 235/578 (40%), Positives = 331/578 (57%), Gaps = 75/578 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG------------------------- 97
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 98 -------VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 149
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 209
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 210 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 329 KPLYVALAQRKEERQAHLTNQYMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 388
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 389 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 447
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 448 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 496
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 497 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 552
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 553 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 590
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 233/569 (40%), Positives = 327/569 (57%), Gaps = 85/569 (14%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++P+ + RIM+S RDP++RK+G GNI+IKNLD +ID+KALHDTFS+FG IL
Sbjct: 102 RALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQIL 161
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCKIATD G S+GFGFV +E+ ESA++AI +NGML+NDK+VFVG + K +R
Sbjct: 162 SCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEE 221
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K F NVF+KNL T+ + +++ ++G +S + + +GK FGFV+++ D A
Sbjct: 222 QKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAV 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KA++ L+ +F + + G+A+KK ER EL+ Q+E + E ++K+QG+NLYIKNL D+I
Sbjct: 282 KAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTI 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ F+ GTITS KVM D +G SKG GFV +S+PEEA++A+ EMN +++ KPLY
Sbjct: 342 DDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLY 401
Query: 307 VAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
V +AQRK+ RR++LQ Q +QMR
Sbjct: 402 VVLAQRKDVRRSQLQQQIQAKNQMR----------------------------------- 426
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPM--PNFFVPVVSQGQQGQRPGGRRG---AGPVQQTQQ 418
QQQ G P G M P F P GQ G P GR G Q +
Sbjct: 427 --------LQQQAAAGGLP-GQYMGNPGVFYP----GQPGFMPPGRGGMPFGANPQMMMR 473
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGA----GSML---------PVPVDMG 462
P +Q PPRG P G NM P + G G M P P
Sbjct: 474 PPMPPQNQFPPRG----VPGGPNMYGAPPQGYQQGGFPPQGPMRGGQPPRSGQPGPQGQF 529
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV---EQLERDA--AAKVT 517
G PRR G+ ++S AL NA EQ + L+GE+LYP V + ++ +A A K+T
Sbjct: 530 RGAPRRKD--GESRVADSISNALENAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKIT 587
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAM 546
GMLLEM E+L +++ E L+A++ +A+
Sbjct: 588 GMLLEMPIKEILEVIDDEEGLQAQINDAI 616
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 145/288 (50%), Gaps = 15/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ LD S+ L + F+ G + S ++ D + +S G+ +V F N+ A+++
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN I ++ + +R+ KT N+++KNLD + ++ L F +G I S
Sbjct: 107 LNYSPIKERPCRI----MWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILS 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D G S+ FGFV++E+A+ A A++ +NG +D++ +VG KS+R Q + Q
Sbjct: 163 CKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQ 222
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
K N++IKNLG I + + +EL ++FG +S + + G G GFV
Sbjct: 223 ----------KNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFV 272
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ + A +A+ ++ L+ A++K ER L+ Q+ R
Sbjct: 273 DYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASR 320
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+E E + + E+ KE D+ +LY+ L S+ + L E+F+ G +TS +V RD
Sbjct: 24 AEGEAKTESSEEKGSKE--DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDA 81
Query: 271 -SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ S G +V F + RAL E+N I +P + +QR
Sbjct: 82 ITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQR 124
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/402 (50%), Positives = 269/402 (66%), Gaps = 23/402 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL+VLN+ PL + IRIM+S RDPS+RKSG GNIFIKNLDKSI+ K L+DTFS FG
Sbjct: 67 AEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKI D +GQSKG+GFV FE +E A+ AI+K+N M+I D+ V+VG F+ K ER++ A
Sbjct: 127 ILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQA 186
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNN++VKN T +E LK++F E+G I SA VM+D +GKSK FGFV + + D A
Sbjct: 187 RKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAE 246
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-GLNLYIKNLGDS 245
AV ++GK+ + R Y +AQ+K ER++ELK + E+ E + +NLY+KNL D+
Sbjct: 247 NAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDN 306
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDD++L+E FS G+ITS KVM+D + SKG GFV F+ PE+A+RA+ +MNG +I SKPL
Sbjct: 307 IDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPL 366
Query: 306 YVAVAQRKEERRARL----QAQFSQMR-PVA-MGPSVPPRMP-------------MYPPG 346
YVA+AQRKE+RRA+L Q + +Q R PVA M P+VP Y P
Sbjct: 367 YVALAQRKEDRRAKLIEEHQQRLAQYRAPVASMIPAVPGHAAPHNYFPPAFQAQRFYHPS 426
Query: 347 PSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMP 388
+ L Q + +A A IP Q G + V G P GAP P
Sbjct: 427 SAVLSSQPRWNRA--AGIPAQIGAIPNRPPVAGYYP-GAPNP 465
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 163/290 (56%), Gaps = 21/290 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + AL FS G +LS ++ D + QS G+G+V FE+ + A+ A++
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
LN + +G +R +R+ K+ N+F+KNLD+S ++L F +G I
Sbjct: 74 LN------YEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRI 127
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S ++ D +G+SK +GFV+FE + A +A+E +N DR YVGK K+ER+ + +
Sbjct: 128 LSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
K + NLY+KN D+EKLKE+FSEFG I S VM+D G SKG G
Sbjct: 188 ------------KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFG 235
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV + P+ A A+ M+GK I + LY A AQRKEER+ L+ + + R
Sbjct: 236 FVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQR 285
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ALA S Q+ LGE L+P ++ + A K+TGMLL +D EV++LLES + L+AK
Sbjct: 621 SALAQLSEVDQKRALGEHLFPRIQTMYPTLARKLTGMLLGVDNAEVINLLESDDLLRAKC 680
Query: 543 AEAMEVLRSVAQQQ 556
E + VL S QQ
Sbjct: 681 EEGISVLESSQNQQ 694
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 233 QGL---NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 288
QGL +LY+ +L + D L+ FSE G + S +V RD + S G G+V F P+ A
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHA 67
Query: 289 SRALAEMNGKMIVSKPLYVAVAQR 312
+AL +N + ++ +P+ + +QR
Sbjct: 68 EQALEVLNYEPLMGRPIRIMWSQR 91
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/327 (55%), Positives = 253/327 (77%), Gaps = 9/327 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCKIA+D +G SKG+GFV FE +E+A+ AI+K+NGML+N K+V+VG F+ ++ER
Sbjct: 123 GNILSCKIASDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKER-- 179
Query: 125 VAI----KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+A+ +FNNV++KN + D+ ++++F +G I SA VM D GKS+ FGFV++E
Sbjct: 180 IALLGDKMKRFNNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYE 239
Query: 181 NADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ A KAV+ LNG + + Y G+AQKK+ER+ ELK +FE+ E ++++QG+NLY+
Sbjct: 240 EPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYV 299
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL D +DDE+L++ FS+FGTITS +VM + G SKG GFV FS+PEEA++A+ EMNG++
Sbjct: 300 KNLDDVVDDERLRKEFSQFGTITSARVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRI 358
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQ 326
IVSKPLYVA+AQRKE+RRA L +Q+ Q
Sbjct: 359 IVSKPLYVALAQRKEDRRAHLASQYMQ 385
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 163/289 (56%), Gaps = 17/289 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I + + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDTIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D +G SK +GFV+FE + A +A+E +NG + ++ YVGK + ER L
Sbjct: 128 CKIASDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALL--- 183
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ + +F N+YIKN GD +DD+K++ELF FG I S KVM D G S+G GFV
Sbjct: 184 -----GDKMKRFN--NVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNG-KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
++ PE A +A+ +NG ++ K LY AQ+K ER+A L+ +F +++
Sbjct: 237 SYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIK 285
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/365 (51%), Positives = 259/365 (70%), Gaps = 9/365 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + + IRIM+SHRDP +RKSG GNIFIKNL+ SID+KAL+DTFS+FG+
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGS 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILS K+ + G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF +Q+RE
Sbjct: 125 ILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A F N++VKNL + ++ L+ +F ++G + S VMRD +G+S+ FGFVNFE ++
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEE 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG+NLY+KNL D
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
SI+DE+LKE+FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
LYVA+AQRKEER+A L Q+ + RP + P + P P Q Y +
Sbjct: 363 LYVALAQRKEERKAILTNQYRR-RPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSG--S 419
Query: 363 IIPPQ 367
I P Q
Sbjct: 420 ITPMQ 424
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS GNILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + R+ K+ N+F+KNL+ S ++ L F +G+I S
Sbjct: 72 MNFEVIKGQPIRI----MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ V+ + G S+ FGFV+FE + A KA+ +NG +DR+ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGA- 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+A+ T N+Y+KNL ++D+++L++LFS+FG + S KVMRD +G S+G GFV
Sbjct: 186 --RALGFT-------NIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+ MNGK + + LYV AQ++ ER++ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMK 284
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/396 (50%), Positives = 270/396 (68%), Gaps = 34/396 (8%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+ +A++ LN+TP+ + RIM+S RDP++RK G+GNIFIKNL ID+KAL +TFS FG
Sbjct: 88 AGKKAIEQLNYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFG 147
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
NILS KIATD +G+SKGFGFV FE++ SA+ AID LNGML+N ++++V L ++ER++
Sbjct: 148 NILSSKIATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQ 207
Query: 126 AIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+TK F NV+VKN++ TTDE+ ++F +YG + S+ + + DGK K FGFV+FE +
Sbjct: 208 LEETKAHFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHE 267
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DAAKAVE LNG +F D+ +V +AQKK ER QELK Q+E + E + K+QG+NL++KNL
Sbjct: 268 DAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLD 327
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDDEKLKE F+ +GTITS +VMR +G SKG GFV FSTPEEA++A+ E N +++ K
Sbjct: 328 DSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Query: 304 PLYVAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR 339
PLYVA+AQRK+ RR++L Q +QMR P+ G +PPR
Sbjct: 388 PLYVAIAQRKDVRRSQLAQQIQARTQMRYQQATAAAAAAAAGIPGQFMPPMFYG-VMPPR 446
Query: 340 -MPMYPPGPSGLG----QQFLYGQAPPAIIPPQAGF 370
+P P P + QQF G P +PPQ GF
Sbjct: 447 GVPFNGPNPQQMNGVPPQQFRNG--PGYGMPPQGGF 480
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 5 SSAARALDVLNFTPLNNKSI----RIMYSHRDPSIR--KSGTGNIFIKNLDKSIDHKALH 58
SSA A+D LN LN + I + RD + K+ N+++KN++ + +
Sbjct: 174 SSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFN 233
Query: 59 DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
+ F+ +GN+LS + G+ KGFGFV FE E A A+++LNG D+ +FV +
Sbjct: 234 ELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQK 293
Query: 119 KQER-------------ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 165
K ER E +A K + N+FVKNLD+S DE LK+ F YGTITS VMR
Sbjct: 294 KYERMQELKKQYEASRLEKMA-KYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMR 352
Query: 166 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
+GKSK FGFV F ++A KA+ N + + YV AQ+K R +L Q +
Sbjct: 353 TDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 409
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 191
+++V LD + ++ L IF G+++S V RD K+ + +VNF + + KA+E
Sbjct: 36 SLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQ 95
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ ++ G N++IKNL ID++ L
Sbjct: 96 LNYTPIKGRLCRIMWSQRDPALRKKGSG----------------NIFIKNLHPDIDNKAL 139
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E FS FG I S K+ D +G SKG GFV F A A+ +NG ++ + +YVA
Sbjct: 140 FETFSVFGNILSSKIATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHL 199
Query: 312 RKEERRARLQ 321
++ER ++L+
Sbjct: 200 TRKERDSQLE 209
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 33/141 (23%)
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
P+ MPPRG + P + M P F G G +P G PR
Sbjct: 437 PMFYGVMPPRGVPFNGPNPQQMNGVPPQQFRNGPGYGMPPQ----GGFPR---------- 482
Query: 478 ITALSTALANASPEQ-----QRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLH 530
N P Q QR LGE LY V + + +AA K+TGM+L++ EV+
Sbjct: 483 ---------NGVPNQFYQKNQRQALGEELYKKVSAKNADEEAAGKITGMILDLPPQEVVS 533
Query: 531 LLESPEALKAKVAEAMEVLRS 551
LLE+ E + EA S
Sbjct: 534 LLENDELFEQHFKEASAAYES 554
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/361 (54%), Positives = 252/361 (69%), Gaps = 19/361 (5%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A RALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLD+SID K L+DTFS+
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSA 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER- 122
FGNILSCK+ D +G SKG+GFV FE +E A+ AI+K+NGM +ND +VFVG F +++R
Sbjct: 122 FGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQ 180
Query: 123 -ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
E A +F NV++KNL E DE L+ +FG +G S VM D GKSK FGFV+FE
Sbjct: 181 AELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-------- 233
+DA KAVE +NGK + ++ YVG+AQKK ER+ ELK +F Q MK+ K +
Sbjct: 241 HEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSV 299
Query: 234 ---GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 290
G+NLY+KNL D IDDE+L++ FS FGTITS KV + G SKG GFV FS+PEEA++
Sbjct: 300 RCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATK 358
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPP-GPS 348
A+ EMNGK++ +KPLYVA+AQRKEER+A L Q+ Q M + GP+ P P P GPS
Sbjct: 359 AVTEMNGKIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPN-PVVSPFQPAQGPS 417
Query: 349 G 349
G
Sbjct: 418 G 418
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ V F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
E A+ A+D +N +I K V + +R+ K+ N+FVKNLD S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE ++A +A+E +NG +D + +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+R+ EL + ++ N+YIKNLG+ +DDE+L++LF FG S KVM D
Sbjct: 177 RDRQAELGARAKEFT----------NVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 50/70 (71%)
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
++ LA+A P+ Q+ +LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L K
Sbjct: 554 ASMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTK 613
Query: 542 VAEAMEVLRS 551
V EA+ VL++
Sbjct: 614 VDEAIAVLQA 623
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/323 (57%), Positives = 240/323 (74%), Gaps = 3/323 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + NK IRIM+S RDPS+R+SG GN+FIKNLD+ ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G SKG+GFV FE +E+A +I+K+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E DE LK F YG ITS VM DGKSK FGFV FE
Sbjct: 174 ELGEKAKLFTNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ K+ + G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L++ FS +GTITS KVM D G SKG GFV F +P EA+ A+ E+NG+++
Sbjct: 294 LDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQF 324
SKPLYVA+AQRKEER+A L +Q+
Sbjct: 354 SKPLYVALAQRKEERKAHLASQY 376
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + I+ L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI +K + + +R+ ++ NVF+KNLD ++ + F +G I
Sbjct: 62 TMNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A ++E +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLK+ F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/415 (49%), Positives = 274/415 (66%), Gaps = 16/415 (3%)
Query: 2 FMLSSAAR-ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F +A R A++ LN+TP+ + RIM+S RDPS+RK G+GN+FIKNL +ID+KALHDT
Sbjct: 88 FHDHNAGRTAIEKLNYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDT 147
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
FS FGNILSCKIATD +G+S+ FGFV FE +E+A+ AID +NGML+N +V+V + K+
Sbjct: 148 FSVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKK 207
Query: 121 ERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
+R++ +K+ F NV+VKN+D TT E+ +K+F YG ITSAV+ RD +GK + FGFVN
Sbjct: 208 DRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVN 267
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
FE+ + A KA E LN F ++ YVG+AQKK ER QELK Q+E + E + K+QG+NL+
Sbjct: 268 FEDHNAALKACEELNDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGVNLF 327
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
+KNL DS+DD+KL+E F+ FGTITS KVMRD +G SKG GFV FSTPEEA++A+ E N +
Sbjct: 328 VKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQ 387
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL 355
++ KPLYVA+AQRKE RR++L Q +QMR + M P Q
Sbjct: 388 IVAGKPLYVAIAQRKEVRRSQLAQQIQARNQMRYQQATAAAAAAAGM----PGQFMQPMF 443
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP------VVSQGQQGQRP 404
YG PP +P Q + G+ G P F P V QG QG P
Sbjct: 444 YGVMPPRGVPFNGPNPQQMAAMNGIPKNGVPPQQFGRPAGPMYGVPPQGPQGAFP 498
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V +D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 507 QKQRQALGEQLYKRVSAKTQDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEAFAA 566
Query: 549 LRSVAQQQ 556
S + Q
Sbjct: 567 YDSFKKDQ 574
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEM 295
LY+ L S+ + L +LFS G+++S +V RD + S G +V F A+ ++
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 296 NGKMIVSKPLYVAVAQRKEERRAR 319
N I +P + +QR R +
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKK 125
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/324 (55%), Positives = 238/324 (73%), Gaps = 4/324 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNL+ SID KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF +ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A F N++VKNL ++ L+ +F E+G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV+ +NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ ++QG+NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI DEKL+ +FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG ++ +
Sbjct: 302 DDSISDEKLRTVFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++TFS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ NVF+KNL++S + L F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + ERE EL
Sbjct: 128 CKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAELGA- 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
QA+ T N+Y+KNL +D++ L++LF EFG + S KVMRD SG S+G GFV
Sbjct: 186 --QALAFT-------NIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F EEA +A+ MNGK + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMK 284
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 464 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
G+P V P+TA + LA A +Q+ ++GE LY L+ ++ A K+TGMLLE+
Sbjct: 508 GVPEPAVHVPGQEPLTA--SMLAAAPLHEQKQMIGERLYRLIPEVYAALAGKITGMLLEI 565
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQL 564
D +E+L +LESPE+L+AKV EA+ VL+ A Q P + +
Sbjct: 566 DNSELLLMLESPESLQAKVEEAVAVLQ--AHQAMEQPKEYM 604
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 206/462 (44%), Positives = 287/462 (62%), Gaps = 66/462 (14%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 170 KALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 229
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A NAI +NGML+N+K+V+VG+ + K++R++
Sbjct: 230 SCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEE 289
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ TDE+ +++F +YG +TS+ + R +GKS+ FGFVNF + A+
Sbjct: 290 MKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAAS 349
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNGK F +E YVG+AQKK ERE+EL+ +E A +E +K+QG+NLYIKNLGD +
Sbjct: 350 KAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDV 409
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DD+KL+++FSE+G ITS KVMRD
Sbjct: 410 DDDKLRQMFSEYGPITSAKVMRDSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETKEK 469
Query: 272 ---GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS--- 325
G SKG GFV FS P++A++A+ EMN +MI +KPLYVA+AQRK+ R+++L+A
Sbjct: 470 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRKDVRKSQLEASIQARN 529
Query: 326 --QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-QQLVPGMRP 382
+M+ A +P + M P GQQ P +PP G G Q G+ P
Sbjct: 530 QLRMQQAAAQAGIPQQF-MQQPVYYAPGQQ-------PGFMPPAGGRGMPFAQGAMGIPP 581
Query: 383 AGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
G P + P GQQG RG P QQ +PI P
Sbjct: 582 QGG-RPGQYPPYA--GQQGG-----RGGMPPQQ----MPIYP 611
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 113 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 172
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 173 EDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 228
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + AA A++ +NG ++++ YVG K +R+ +
Sbjct: 229 LSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFE 288
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + DE+ +ELF+++G +TS + R G S+
Sbjct: 289 EMKANF-------------TNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSR 335
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E AS+A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 336 GFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYEAAR 388
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 132/273 (48%), Gaps = 56/273 (20%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYS--HRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+AA A+ +N LN K + + Y +D + K+ N+++KN+ + + +
Sbjct: 254 AAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRE 313
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F+ +G++ S +A G+S+GFGFV F E+A A+++LNG ++++VG +K
Sbjct: 314 LFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKK 373
Query: 120 QERET-------VAIKTKFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
ERE A + K N N+++KNL + D+ L+++F EYG ITSA VMRD
Sbjct: 374 HEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKVMRDS 433
Query: 168 D--------------------------------------GKSKCFGFVNFENADDAAKAV 189
GKSK FGFV F N DDA KAV
Sbjct: 434 VVESAAEDEKDKENKKEDEEEKEGETAEKKAETKEKRKLGKSKGFGFVCFSNPDDATKAV 493
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
+N + D++ YV AQ+K R+ +L+ +
Sbjct: 494 TEMNQRMIDNKPLYVALAQRKDVRKSQLEASIQ 526
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 481 LSTALANA-SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 539
L T LA A SP QQ+ +LGESL+P ++ ++ + A K+TGMLLEM+ E+++L+E AL
Sbjct: 708 LHTQLAAAASPAQQKQILGESLFPKIQAIQPELAGKITGMLLEMENQELINLIEDEAALN 767
Query: 540 AKVAEAMEVLRSVAQQQA 557
AKV EAM V + QA
Sbjct: 768 AKVGEAMNVYDEYVKTQA 785
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 176/321 (54%), Positives = 235/321 (73%), Gaps = 1/321 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LN+ + IRIM+S RDPS+RKSG GNIFIKNLDK+ID K L+DTFS G
Sbjct: 55 AERALENLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGK 114
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIA D G SKG+GFV FE +E A+ AI+K+NGM+IND+ V+VG F+ +R++ +
Sbjct: 115 ILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSAS 174
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K +FNN++VKN TTDE L+ +F E+G I S V ++ +GKSK FGFV F + D A
Sbjct: 175 GKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAE 234
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF-QGLNLYIKNLGDS 245
+AV ++GK+ + R Y +AQ+K ER++ELK + E+ E + K+ G+NLY+KNL D+
Sbjct: 235 QAVRVMHGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDN 294
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDDE+LKE FS +G ITS KVM D +G SKG GFV F+ PE+A+RA+ EMN ++ SKPL
Sbjct: 295 IDDERLKEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPL 354
Query: 306 YVAVAQRKEERRARLQAQFSQ 326
YVA+AQRKE+RRA+L A+ Q
Sbjct: 355 YVALAQRKEDRRAKLIAEHQQ 375
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 159/299 (53%), Gaps = 21/299 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L L+ FS G +LS +I D + S G+G+V FE + A+ A++
Sbjct: 2 SLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALEN 61
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
LN + F+G +R +R+ K+ N+F+KNLD++ + L F G I
Sbjct: 62 LN------YESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKI 115
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D G SK +GFV+FE + A +A+E +NG +DR YVGK S+R
Sbjct: 116 LSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDR----- 170
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
K K + N+Y+KN DEKL+++FSEFG I SC V ++P G SKG G
Sbjct: 171 -------KSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFG 223
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP 337
FV F P+ A +A+ M+GK I + LY + AQRKEER+ L+ + + R + VP
Sbjct: 224 FVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVP 282
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 447 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 506
F+ A ++ P +P A +G P+T +ALA S E Q+ LGE L+PLV+
Sbjct: 577 FNQTARNVSTQPTTAPGNMPSVLAPLGDQSPLTI--SALAQLSEEDQKRTLGERLFPLVQ 634
Query: 507 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
++ A K+TGMLL +D EV+HLLES E+L+AK+ E + VL++
Sbjct: 635 EMYPTLAQKLTGMLLGVDNAEVIHLLESKESLRAKLEEGISVLKT 679
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 246/645 (38%), Positives = 354/645 (54%), Gaps = 118/645 (18%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 175 SCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 234
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ T++D +++F +YG +TS+ + RD +GKS+ FGFVNF + A
Sbjct: 235 MKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAF 294
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D +
Sbjct: 295 KAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDV 354
Query: 247 DDEKLKELFSEFGTITSC-------------KVMRDPS---------------------- 271
DD+KL+E+F +FG+ITS K +D S
Sbjct: 355 DDDKLREMFKDFGSITSAKVMRETPTEGDEDKKEKDESDKENQEEVKEEVKEESKEESKD 414
Query: 272 -------------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
G SKG GFV FS P++A++A+AEMN +M KPLYVA+AQR
Sbjct: 415 ETKEGEEDKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQR 474
Query: 313 KEERRARLQAQF---SQMR-----------------PVAMGPSVPP-RMPM------YPP 345
K+ R+++L+A +Q+R PV P P MP +P
Sbjct: 475 KDVRKSQLEASIQARNQLRMQQAAAVAGMPQQYMQPPVYFAPGQQPGYMPQGGRGVPFPQ 534
Query: 346 GPSGLGQ----QFLYGQ-----APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 396
G G+ Q QF Y Q P +PP +G Q PG G P F+ +
Sbjct: 535 GAMGMPQGRPGQFPYPQQGGRGGVPQQMPPNM-YGMPGQFPPGYGQPGTPQ---FM--AA 588
Query: 397 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFD---MGAGS 453
Q GGR + Q +P MP P+ NM FP + G
Sbjct: 589 MQAQQAALGGRGAPQGGRGGPQGMPGMP------------PMAGNMPGFPPNNNRQGGRG 636
Query: 454 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 513
+ G DA+ +++L LA+A P QQ+ +LGE ++P ++ + D A
Sbjct: 637 GPGRNGNGPQGGRGADAA-----GLSSLQQQLASAPPPQQKQILGELIFPKIQAINADLA 691
Query: 514 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 558
K+TGMLLEM+ E+++L+E ALKAKV EA+ V + Q++
Sbjct: 692 GKITGMLLEMENPELVNLIEDESALKAKVDEALAVYDEYVKTQSS 736
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 118 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 233
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + ++ ++LF ++G +TS + RD G S+
Sbjct: 234 EMKANF-------------TNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSR 280
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A +A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 281 GFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/322 (55%), Positives = 241/322 (74%), Gaps = 4/322 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSC + D +G SKG+GFV FE E+A+ AI+K+NGML+N ++VFVG F ++ERE
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 DIDDERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ 326
LYVA+AQRKEER+A L ++ Q
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQ 384
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K + + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG + R+ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 19/238 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN + + + R+ + R N++IKN + +D + L D
Sbjct: 150 AAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKD 209
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 210 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 120 QERETVAIKT------------KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
ER+T +T + N++VKNLD+ DE L+K F +GTITSA VM +G
Sbjct: 270 VERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEG 329
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L ++ Q M
Sbjct: 330 -GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 62/83 (74%)
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 541 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 600
Query: 539 KAKVAEAMEVLRSVAQQQANNPA 561
++KV EA+ VL++ ++A A
Sbjct: 601 RSKVDEAVAVLQAHQAKEATQKA 623
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/322 (55%), Positives = 241/322 (74%), Gaps = 4/322 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSC + D +G SKG+GFV FE E+A+ AI+K+NGML+N ++VFVG F ++ERE
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 DIDDERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ 326
LYVA+AQRKEER+A L ++ Q
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQ 384
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K + + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG + R+ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 19/238 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN + + + R+ + R N++IKN + +D + L D
Sbjct: 150 AAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKD 209
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 210 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 120 QERETVAIKT------------KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
ER+T +T + N++VKNLD+ DE L+K F +GTITSA VM +G
Sbjct: 270 VERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEG 329
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L ++ Q M
Sbjct: 330 -GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 62/83 (74%)
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 541 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 600
Query: 539 KAKVAEAMEVLRSVAQQQANNPA 561
++KV EA+ VL++ ++A A
Sbjct: 601 RSKVDEAVAVLQAHQAKEATQKA 623
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/322 (55%), Positives = 240/322 (74%), Gaps = 4/322 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ 326
LYVA+AQRKEER+A L ++ Q
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQ 384
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 18/299 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/321 (55%), Positives = 234/321 (72%), Gaps = 4/321 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LN+T + K+ RIM+ HRDPSIRKSG GNIFIKNLDK++D + LHDTFS FGN
Sbjct: 78 AERALDTLNYTQIKGKACRIMWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGN 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK++ D S+GFGFVQFE E A AI K+NGML+ DK++FVG F+ + ERE+
Sbjct: 138 ILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGPFIPRGERESTN 197
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ +F NV+VKN ++ +D+D +K F YG ITS +MR DG SKCFGFVNF+ ADDA
Sbjct: 198 GERRFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAK 257
Query: 187 KAVEALNGKK--FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
K E +NG+K +R+ Y G+A+K+SER+++LK +++Q E + Q +NLYIKNL D
Sbjct: 258 KCCEEMNGQKPFGGERDIYAGRAEKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDD 317
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+IDDEKL++ F +FGTITS KVMRD +SKG GFV F+ PEEA+RA+ MNG+M+ +
Sbjct: 318 TIDDEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGT 377
Query: 303 KPLYVAVAQRKEERRARLQAQ 323
KP+YVA+ Q E RR AQ
Sbjct: 378 KPIYVALHQPIEIRRQMQAAQ 398
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 152/293 (51%), Gaps = 19/293 (6%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
+ ++++ +LD ++ L + FS G + S ++ D + +S G+ +V F N A+ A
Sbjct: 22 ASASLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERA 81
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+D LN I K + + R+ K+ N+F+KNLD++ L F ++G
Sbjct: 82 LDTLNYTQIKGKACRIMW----KHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGN 137
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V D S+ FGFV FE A++A +A+ +NG +D+ +VG + ERE
Sbjct: 138 ILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGPFIPRGERE--- 194
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
T + + N+Y+KN D++ D+ ++ F +G ITSCK+MR G SK
Sbjct: 195 ---------STNGERRFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCF 245
Query: 278 GFVAFSTPEEASRALAEMNGKMIV--SKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV F ++A + EMNG+ + +Y A+++ ER+ +L+ ++ Q+R
Sbjct: 246 GFVNFKEADDAKKCCEEMNGQKPFGGERDIYAGRAEKESERKEKLKKKYDQIR 298
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/324 (55%), Positives = 241/324 (74%), Gaps = 4/324 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 38 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 97
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE ++AQ AI +NGML+ND++VFVGHF ++ERE
Sbjct: 98 GNILSCKVVCDEHG-SRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREA 156
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL + L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 157 ELGARVMEFTNIYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKH 216
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ ++++QG+NLY+KNL
Sbjct: 217 EEAQKAVVHMNGKEVSGRLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNL 276
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSI+DEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 277 DDSINDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 335
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 336 KPLYVALAQRKEERKAILTNQYMQ 359
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 26/181 (14%)
Query: 148 LKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206
L + F G I S V RD +S C+ ++NF+ DA +A++ +N
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNF------------ 49
Query: 207 AQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSIDDEKLKELFSEFGTIT 262
+ +KGQ + M D + G+ N++IKNL DSID++ L + FS FG I
Sbjct: 50 --------EVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 101
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
SCKV+ D G S+G GFV F T + A RA++ MNG ++ + ++V + + ER A L A
Sbjct: 102 SCKVVCDEHG-SRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGA 160
Query: 323 Q 323
+
Sbjct: 161 R 161
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 498 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct: 503 GERLYPLIRDVHHQLAGKITGMLLEIDNSELLLMLESPESLHAKIEEAVAVLQA 556
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 197/400 (49%), Positives = 269/400 (67%), Gaps = 41/400 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A+D LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIDQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK + N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+EN +DA
Sbjct: 214 TKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAV 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALN + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+
Sbjct: 274 KAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVP 452
Query: 342 MYPPGP-----------SGLGQQFLYGQAPPAIIPPQAGF 370
P P +G+ QF G AP +PPQ GF
Sbjct: 453 FNGPNPQQINPMGGMPKNGMPPQF--GNAPVYGVPPQGGF 490
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 156/295 (52%), Gaps = 19/295 (6%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 95
++ + ++++ +L+ ++ L+D FS G++ S ++ D + S G+ +V F + E+ +
Sbjct: 34 ENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 96 NAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
AID+LN I G R +R+ K N+F+KNL ++ L F
Sbjct: 94 KAIDQLNYTPIK------GRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFS 147
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
+G I S+ + D +GKSK FGFV+FE A +A++ALNG + +E YV + ER
Sbjct: 148 VFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER 207
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
+ +L +ET K NLY+KN+ DEK +E+F++FG I S + +D G
Sbjct: 208 DSQL--------EET--KAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGK 257
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
KG GFV + E+A +A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 258 LKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYR 312
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EV LLE+ E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLENDELFEQHYKEASAA 562
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 202/486 (41%), Positives = 287/486 (59%), Gaps = 81/486 (16%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S +AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++F
Sbjct: 116 SDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAF 175
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 176 GNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 235
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F N+++KN+ TD++ + +F +G +TS+ + RD +GKS+ FGFVNF
Sbjct: 236 KFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTH 295
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ AAKAV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL
Sbjct: 296 EAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNL 355
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPS------------------------------- 271
D +DDEKL++LF++FG ITS KVMRD +
Sbjct: 356 DDDVDDEKLRQLFADFGPITSAKVMRDNATDSGNEDEGSSEEKETEAKKDEEEEEKPEEA 415
Query: 272 ---------------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
G SKG GFV FS P++A++A+AEMN +M+ KPLYVA+A
Sbjct: 416 KTDDKEDADKKSDKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALA 475
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
QRK+ R+++L+A + M + P+ M PP GQQ ++ P
Sbjct: 476 QRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAAGQQPVF---------P 526
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGG---RRGAGPVQQTQQPLPIM 423
Q G G P P +P V G+ GQ PGG + G G + Q P+ +
Sbjct: 527 QGGRGM-----------AFPQPGMAMPAVQGGRPGQFPGGYPQQGGRGGLPQQMPPVYGI 575
Query: 424 PHQMPP 429
P Q PP
Sbjct: 576 PGQFPP 581
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 160/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 122
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 178
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 238
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ + D++ ++LF+ FG +TS + RD G S+
Sbjct: 239 EMKANF-------------TNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSR 285
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ ++NGK + LYV AQ+K ER L+ + R
Sbjct: 286 GFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 338
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 209/482 (43%), Positives = 287/482 (59%), Gaps = 81/482 (16%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S +AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++F
Sbjct: 117 SDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAF 176
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV +E E+A AI +N ML+N+K+V+VG+ + K++R++
Sbjct: 177 GNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQS 236
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F N++VKN+ TDE+ + +F +YG +TS+ + RD +GKS+ FGFVNF
Sbjct: 237 KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTH 296
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ AAKAVE LNGK+F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL
Sbjct: 297 ECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNL 356
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPS------------------------------- 271
D IDD+KL+++FSE+G ITS KVMRD
Sbjct: 357 ADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAE 416
Query: 272 --------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
G SKG GFV FS P++A++A+AEMN +MI KPLYVA+AQRK+ R+
Sbjct: 417 GAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRK 476
Query: 318 ARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLV 377
+L+A + M + +GL QQ++ Q P P G Q +
Sbjct: 477 NQLEASIQARNQLRMQQAA---------AQAGLPQQYM--QTPVYYAP-----GQQPNFM 520
Query: 378 PGMRPAGAPMP----NFFVPVVSQGQQGQRP-----GGRRGAGPVQQTQQPLPIMP-HQM 427
P P G MP +P V G+ GQ P GGR G P Q LPI P Q
Sbjct: 521 P---PGGRGMPFPQGGLGMPAVQGGRPGQFPPYAQQGGRGGMPPQQ-----LPIYPLGQF 572
Query: 428 PP 429
PP
Sbjct: 573 PP 574
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 160/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + + A+
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 124 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 179
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + AA+A++ +N ++++ YVG K +R+ +
Sbjct: 180 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFE 239
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ DE+ ++LF+++G +TS + RD G S+
Sbjct: 240 EMKANF-------------TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSR 286
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 287 GFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAAR 339
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
S A +P+QQ+ +LGE+L+P ++ L+ D A K+TGMLLEMD E+++LLE AL AK
Sbjct: 681 SQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAK 740
Query: 542 VAEAMEVLRSVAQQQ 556
V EAM V + Q
Sbjct: 741 VNEAMAVYDEYVKSQ 755
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/337 (54%), Positives = 245/337 (72%), Gaps = 6/337 (1%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A RA++ LN+ +N K +RIM+SHRDPS RKSG GNIFIKNLDK+ID KALHDTFS+FG
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG 138
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
ILSCK+ATD +G SKG+GFV FE++ +A AI +N I K V+VG F ++ +R
Sbjct: 139 KILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRP-- 196
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
+ + NVFVKNL D++L K+ E+G ITSAVVM+D G SK FGF+NF++A+ A
Sbjct: 197 --QDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESA 254
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AK VE LN ++ + Y G+AQKK+ERE L+ + E++ +E K+QG+NLY+KNL D
Sbjct: 255 AKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDE 314
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+DD+ L+ELF+ GTITSCKVM+D SG SKG GFV F++ +EA+RA+ EMNGKM+ KPL
Sbjct: 315 VDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPL 374
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 342
YVA+AQRK+ RRA+L+A Q R + MG P PM
Sbjct: 375 YVALAQRKDVRRAQLEANM-QAR-MGMGAMSRPPNPM 409
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 156/286 (54%), Gaps = 28/286 (9%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK---ESAQNA 97
++++ +L+K + L + FSS G + S ++ D + +S G+ +V + + ++A A
Sbjct: 24 SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRA 83
Query: 98 IDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
++ LN ++N K ++ H R+ A K+ N+F+KNLD++ + L F +
Sbjct: 84 METLNYHVVNGKPMRIMWSH------RDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAF 137
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S V D +G SK +GFV+FE+ A +A++ +N K+ + + YVG QK+++R Q
Sbjct: 138 GKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQ 197
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
++ N+++KNL I D++L ++ +E G ITS VM+D G SK
Sbjct: 198 DVY----------------TNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSK 241
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 321
G GF+ F E A++ + +N + + K LY AQ+K ER A L+
Sbjct: 242 GFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLR 287
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%)
Query: 490 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
PEQQ+ ++GE LYP V +L+ D A K+TGMLLEMD E+L LLES EAL +KV EA+ VL
Sbjct: 565 PEQQKMMIGERLYPQVAELQPDLAGKITGMLLEMDNAELLMLLESHEALVSKVDEAIAVL 624
Query: 550 R 550
+
Sbjct: 625 K 625
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 183/323 (56%), Positives = 240/323 (74%), Gaps = 3/323 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L NK IRIM+S RDPS+R+SG GN+FIKNLD++ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD G SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E DE LK+ F YG ITS VM DGKSK FGFV FE
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ ++ + G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDD++L+ FS +G ITS KVM D G SKG GFV F+ EA+ A+ E+NG+++
Sbjct: 294 LDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQF 324
SKPLYVA+AQRKEER+A L +Q+
Sbjct: 354 SKPLYVALAQRKEERKAHLASQY 376
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 164/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + ++ L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N L+ +K + + +R+ ++ NVF+KNLD + ++ + F +G I
Sbjct: 62 TMNFDLLRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 557 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 616
Query: 541 KVAEAMEVLR 550
KV EA+ VL+
Sbjct: 617 KVEEAVAVLQ 626
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 188/331 (56%), Positives = 241/331 (72%), Gaps = 4/331 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A R LD +NF L K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KA++DTFS+FGN
Sbjct: 66 AERVLDTMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGN 125
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
ILSCK+A D G SKG+GFV FE+ E+A AI+K+NGML+N K+V+VG F+ + ERE +
Sbjct: 126 ILSCKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEI 185
Query: 126 AIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K+ K+ NV+VKN + T E L +F YGTITS VVM + DG SK FGF+ FE +
Sbjct: 186 GEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPES 245
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV +N + + YVG+AQKKSER +ELK +EQ E ++ QG N+YIKNL D
Sbjct: 246 AEKAVTEMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDD 305
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+ D+++L++ FS+FG ITS KVM + G SKG GFV FSTPEEAS+A+ EM+G+MI SKP
Sbjct: 306 TFDNDRLRKEFSQFGAITSAKVMTE-GGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKP 364
Query: 305 LYVAVAQRKEERRARLQAQFSQ-MRPVAMGP 334
+YVA+AQR E+RRA L AQ Q +R M P
Sbjct: 365 IYVALAQRYEDRRAYLSAQCMQRIRHQTMSP 395
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 494 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ +LGE +Y ++E+ + A K+TGMLLE+D +E+ L+ + +LKAKV EA+ VL++
Sbjct: 499 KRMLGERMYRVIEKTYPEIAGKITGMLLEIDISELKALVNNEGSLKAKVEEAVAVLQA 556
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V FS EA R L
Sbjct: 13 SLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDT 72
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++ KP+ + +QR
Sbjct: 73 MNFDLLKGKPIRIMWSQR 90
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 192/370 (51%), Positives = 256/370 (69%), Gaps = 18/370 (4%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A RALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLD+SID K L+DTFS+
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSA 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER- 122
FGNILSCK+ D +G SKG+GFV FE +E A+ AI+K+NGM +ND++VFVG F +++R
Sbjct: 122 FGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQ 180
Query: 123 -ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
E A +F NV++KNL E DE L+ +F +G S VM D GKSK FGFV+FE
Sbjct: 181 AELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF----------EQAMKETVDK 231
+DA KAV+ +NGK + ++ YVG+AQKK ER+ ELK +F EQ ++ +
Sbjct: 241 HEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVR 300
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 291
QG+NLY+KNL D IDDE+L++ FS FGTITS KV + G SKG GFV FS+PEEA++A
Sbjct: 301 CQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKA 359
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP-PRMPMYPPGPSGL 350
+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ M+ +A +VP P + + P GL
Sbjct: 360 VTEMNGRIVATKPLYVALAQRKEERQAHLSNQY--MQRMASTSAVPNPGINPFQPA-QGL 416
Query: 351 GQQFLYGQAP 360
F+ AP
Sbjct: 417 SGYFMTATAP 426
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ V F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
E A+ A+D +N +I K V + +R+ K+ N+FVKNLD S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE ++A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+R+ EL + ++ N+YIKNLG+ +DDE+L++LFS FG S KVM D
Sbjct: 177 RDRQAELGARAKEFT----------NVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
LA+A P+ Q+ +LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L KV E
Sbjct: 557 LASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKVDE 616
Query: 545 AMEVLRS 551
A+ VL++
Sbjct: 617 AIAVLQA 623
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 209/436 (47%), Positives = 278/436 (63%), Gaps = 48/436 (11%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
A++ LN+ P+ RIM+S RDPS+RK G+GNIFIKNL ID+KALHDTFS FGNILS
Sbjct: 99 AIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILS 158
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AI 127
CKIATD +G S+GFGFV FE+ E+A+ AID +NGML+N ++V+V + K++R++
Sbjct: 159 CKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEA 218
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K F NV+VKN+ T DE+ ++ F + G ITSA + +D +GK + FGFVN+EN +DAAK
Sbjct: 219 KANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAK 278
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
AVE LN F + +VG+AQKK ER QELK Q+E E ++K+QG+NL++KNL D+ID
Sbjct: 279 AVEELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTID 338
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
D+KL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLYV
Sbjct: 339 DQKLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 398
Query: 308 AVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MPM 342
A+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 399 AIAQRKDVRRSQLAQQIQARNQMRYQQVTAAAAAAAAGMRGQFMPPMFYG-VMPPRGVPF 457
Query: 343 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
P P Q G P +PPQ ++ V G+ P GAP QQGQ
Sbjct: 458 NGPNPQ---QMAAMGGMPKNGVPPQQ---FRNGPVYGVPPQGAP------------QQGQ 499
Query: 403 RPGGRRGAGPVQQTQQ 418
R GAG Q QQ
Sbjct: 500 FM--RNGAGANQFYQQ 513
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR +LGE LY V + + +AA K+TGM+L++ EV+ LLES E EA
Sbjct: 513 QKQRQVLGEQLYKKVFAKTSDEEAAGKITGMILDLPSQEVVPLLESDELFDQHFKEAFAA 572
Query: 549 LRS 551
S
Sbjct: 573 YES 575
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L ++FS G+++S +V RD + S G +V F+ E A+ +
Sbjct: 43 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEK 102
Query: 295 MNGKMIVSKPLYVAVAQRKEERRAR 319
+N I P + +QR R +
Sbjct: 103 LNYAPIKGVPCRIMWSQRDPSMRKK 127
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 367 bits (943), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 212/484 (43%), Positives = 289/484 (59%), Gaps = 82/484 (16%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ +AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++F
Sbjct: 114 TDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 173
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV +E E+A AI +NGML+N+K+VFVGH + K++R++
Sbjct: 174 GNILSCKVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQS 233
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFEN 181
+K F N++VKN+ TDE+ +++F ++G +TSA + RD D GKS+ FGFVNF N
Sbjct: 234 KFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFIN 293
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ AA AV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E K+QG+NLY+KN
Sbjct: 294 HEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKN 353
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPS------------------------------ 271
L D +DDEKL+ELF+ FG ITS KVMRD +
Sbjct: 354 LDDDVDDEKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKAD 413
Query: 272 --------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
G SKG GFV FS P+EA++A+A+MN M+ KPLYVA+AQRK+ R+
Sbjct: 414 GEKKEAPKSEKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRKDVRK 473
Query: 318 ARLQAQFS-----QMRPVAMGPSVPPRM---PM-YPPGPSGLGQQFLYGQAPPAIIPPQA 368
+L+A +M+ A +PP+ PM YPP GQQ P +P
Sbjct: 474 GQLEASIQARNQIRMQQAAAQAGMPPQYMQAPMFYPP-----GQQ-------PGFMPAAG 521
Query: 369 GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGG---RRGAGPVQQTQQPLPIMPH 425
G G +P AG PMP G+ Q PGG + G G QQ + +P
Sbjct: 522 GRG-----MPYPPQAGMPMP------AQGGRPAQFPGGFPPQGGRGGPQQMPPNMYGIPG 570
Query: 426 QMPP 429
Q PP
Sbjct: 571 QFPP 574
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 63 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKALEE 122
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 123 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDTAIDNKAL 166
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV +D SG SKG GFV + T E AS+A+ +NG ++ K ++V
Sbjct: 167 HDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHI 226
Query: 312 RKEERRARLQAQFSQMR 328
K++R Q++F +M+
Sbjct: 227 PKKDR----QSKFEEMK 239
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 367 bits (943), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 237/591 (40%), Positives = 335/591 (56%), Gaps = 84/591 (14%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LN++P+ K RIM+SHRDP++RK+G N+F+KNLDK+ID+KAL+DTFS
Sbjct: 85 VADAERALDTLNYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSL 144
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER- 122
FGNILSCK+ATD G+S+G+GFV FEN ESA AI KLNGM+I +K V+VG F + ER
Sbjct: 145 FGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAERA 204
Query: 123 -ETVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+ KF NV++K+L ES TT+ED++K F E+G ITS + D G+ F FVN+E
Sbjct: 205 EQHGDEPRKFTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDRKGRR--FAFVNYE 262
Query: 181 NADDAAKAVEALNGKKFDDRE-----------------------WYVGKAQKKSEREQEL 217
+ D AAKAVEA+NGK +E YV +AQ K+ER EL
Sbjct: 263 DFDSAAKAVEAMNGKDMRTQEEIDAGKGEEESTEEGSDEMPEYKLYVTRAQTKTERSAEL 322
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKG 276
+ +F+ E V Q NLY+KNL + +DDEKL+++F +FG ITS KVM D +G+S+G
Sbjct: 323 RNKFQAKNTEKVGN-QSCNLYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRG 381
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA----- 331
GFV F+ + +A+ M+ K+ KPL+VAVA++++ R RLQ ++ P+
Sbjct: 382 FGFVCFANQADGEKAIQAMHLKLYGGKPLFVAVAEKRDARIERLQQRYRAGIPMGGFQQN 441
Query: 332 ----MGP---SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG 384
GP + P PMY G + G + P+ G Q+
Sbjct: 442 YQGYRGPRNFNAPNPSPMYYSGGQNRQGGMMQGPPGGFVGGPRGPMGAQR---------- 491
Query: 385 APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH---AYRYPLGRN 441
PM + PV +G RP G +MP PPRG+ R+P
Sbjct: 492 GPMMSGGYPV----NRGPRPTGPN-------------MMPMNQPPRGNFPPQQRFP---G 531
Query: 442 MQDFPFDMGAGSMLP--VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 499
Q PF G M P +P +P ++ P P+TA ALA+A P Q+ +LGE
Sbjct: 532 QQGGPFMGQQGGMPPRMMPEQHNMPMPHQN-----PPPMTA--AALASAPPGLQKQMLGE 584
Query: 500 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
L+ L+ + + A K+TGM+LEMD +E+L L++S + L+ K+ EA+ VL+
Sbjct: 585 RLFTLISKYQPTLAGKITGMMLEMDNSELLMLIDSDQQLRMKIDEAVRVLQ 635
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 41/308 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ F+ G + S ++ D + +S G+ +V F N A+ A+D
Sbjct: 35 SLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDT 94
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN I KQ + R+ K NVFVKNLD++ ++ L F +G I S
Sbjct: 95 LNYSPIRGKQCRI----MWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILS 150
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D DGKS+ +GFV+FEN + A KA+ LNG ++ YVG QK +ER ++
Sbjct: 151 CKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAERAEQ---- 206
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ KF N+YIK+L +S +E +++ F EFG ITS + D G + F
Sbjct: 207 ----HGDEPRKF--TNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDRKG--RRFAF 258
Query: 280 VAFSTPEEASRALAEMNGKMIVSK-----------------------PLYVAVAQRKEER 316
V + + A++A+ MNGK + ++ LYV AQ K ER
Sbjct: 259 VNYEDFDSAAKAVEAMNGKDMRTQEEIDAGKGEEESTEEGSDEMPEYKLYVTRAQTKTER 318
Query: 317 RARLQAQF 324
A L+ +F
Sbjct: 319 SAELRNKF 326
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 367 bits (942), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 213/483 (44%), Positives = 286/483 (59%), Gaps = 85/483 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E ++A AI +NGML+N+K+VFVGH + K++R +
Sbjct: 171 SCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D TTD++ +++F +YG ITSA + D GK + FGFVNF +DAA
Sbjct: 231 MKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAA 290
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN F ++ YVG+AQKK ERE+EL+ Q+E +E K+QG+NLY+KNL D I
Sbjct: 291 KAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEI 350
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDE+L+++F +G ITS KVMRD +
Sbjct: 351 DDEELRKIFEPYGAITSAKVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKDDADE 410
Query: 272 -----------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314
G SKG GFV FS P+EA++A+ E+N KMI SKPLYVA+AQRKE
Sbjct: 411 LAKKLDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALAQRKE 470
Query: 315 ERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQ 374
R+++L+A V M GL QQF+ APP + G Q
Sbjct: 471 VRKSQLEASIQARNQVRMQQQAT---------AGGLPQQFM---APPQMF---IGPNGQP 515
Query: 375 QLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG-------GRRGAGPVQQTQQPLPIMPHQM 427
++PG R MP FV + QG QGQR G G RG GP Q +P MP+
Sbjct: 516 MMIPGGR---GQMP--FVQGMPQG-QGQRGGFPGMPQQGGRG-GPAALPQ--MPQMPYGF 566
Query: 428 PPR 430
PP+
Sbjct: 567 PPQ 569
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 156/300 (52%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + +
Sbjct: 47 PTNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 106
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A+++LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 107 ADGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 162
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V D G SK +GFV++E +D A +A++++NG ++++ +VG K
Sbjct: 163 FAAFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKK 222
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R +E+K F N+Y+KN+ D++ +ELF ++G ITS +
Sbjct: 223 DRMSKFEEMKANF-------------TNIYVKNIDAETTDDEFRELFEKYGQITSASLAH 269
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G +G GFV F E+A++A+ E+N + LYV AQ+K ER L+ Q+ R
Sbjct: 270 DDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQR 329
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 209/474 (44%), Positives = 291/474 (61%), Gaps = 73/474 (15%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VG+ + K++R++
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEE 234
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ TDED +++F ++G +TS+ + RD +GK++ FGFVNF + A
Sbjct: 235 MKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAF 294
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D +
Sbjct: 295 KAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDV 354
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+++F+EFG ITS KVMRD
Sbjct: 355 DDEKLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKKTE 414
Query: 272 -------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
G SKG GFV FS P++A++A+AEMN +MI +KPLYVA+AQRK+ R+++L+A
Sbjct: 415 KKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASI 474
Query: 325 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGM 380
+ M + P+ M PP GQQ P I PQ G G +P
Sbjct: 475 QARNQLRMQQAAAAAGMPQQYMQPPVFYAPGQQ-------PGFI-PQGGRG-----IPFP 521
Query: 381 RPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP----IMPHQMPPR 430
+P G PMPN V G+ GQ PG + G + Q LP +P Q PP+
Sbjct: 522 QP-GMPMPN-----VQGGRPGQFPGYPQQGG--RNMPQGLPPNMYSIPGQFPPQ 567
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 118 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+ +
Sbjct: 174 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFE 233
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + DE ++LF +FG +TS + RD G ++
Sbjct: 234 EMKANF-------------TNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTR 280
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A +A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 281 GFGFVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 496 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
+LGE ++P ++ + + A K+TGMLLEMD +E+++L+E ALKAKV EA+ V +
Sbjct: 672 ILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAVYDEYVKS 731
Query: 556 QA 557
QA
Sbjct: 732 QA 733
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 228/571 (39%), Positives = 323/571 (56%), Gaps = 73/571 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG------------------------- 97
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
+ D +G KG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 98 -------VVCDENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREA 149
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 209
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 210 EDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L + Q P P P PS + Q
Sbjct: 329 KPLYVALAQRKEERQAHLTNLYMQRMASVRAVPNPLINPYQPAPPSAYFMAAIPQTQNRA 388
Query: 362 AIIPP--------------QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
A PP Q + Q +PG AP P F + Q + +
Sbjct: 389 AYYPPRQIAQLRPSPRWTAQGARPHPFQNMPGAIHPAAPRPPFSTMRPASSQVPRVMSTQ 448
Query: 408 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
R A QT+ P P A P R + + + +G + P P+
Sbjct: 449 RVADTSTQTKGPRPAA-------AAAAATPAVRTVPQYKYAVGVRN----PQQHLNAQPQ 497
Query: 468 RDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML
Sbjct: 498 --VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGEWLFPLIQAMHPSLAGKITGML 553
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
LE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 554 LEIDNSELLHILESPESLRSKVDEAVAVLQA 584
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSTPSYPMASLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN +I KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 254/678 (37%), Positives = 353/678 (52%), Gaps = 143/678 (21%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 114 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 173
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 174 SCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 233
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+++ TDE+ + +F +YG ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 234 MKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAA 293
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+ AVEALN + ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 294 SAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 353
Query: 246 IDDEKLKELFSEFGTITSCKVMRDP----------------------SGISKGSGFVAFS 283
IDDEKL+ELFS +G ITS KVMR+ +G A S
Sbjct: 354 IDDEKLRELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKS 413
Query: 284 TPEEASRALAEMNGKMIVSKP--------------------------------------L 305
E+ S++ + GK +KP L
Sbjct: 414 ESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPL 473
Query: 306 YVAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
YVA+AQRK+ R+++L+A Q A G + P P G G Q FL G
Sbjct: 474 YVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQ-QGFLPGA 532
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG--GRRGAGPVQQT 416
QAG ++PGM P+G P GQ Q PG G RG P
Sbjct: 533 QRGMQFAGQAGM-----VMPGM-PSGRP-----------GQFPQFPGQQGGRGMNP---- 571
Query: 417 QQPLP---IMPHQMPPRG--------HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG- 464
QPLP M +Q P G + YP +Q F G G + AG
Sbjct: 572 NQPLPPNFAMGNQAIPMGAMQGAGIPNGLNYPQIGQVQSFGRGGGRGQGPMQGMPPAAGN 631
Query: 465 IPRRDASVGQP-------MPIT-----------------------------ALSTALANA 488
P+ G P MPI +++ A+ NA
Sbjct: 632 APQMRGGPGAPGFAQGRNMPIQQGGRAGPGGRGQGAPGQGGIPRDEAAGSGSINLAVFNA 691
Query: 489 SPE-QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 547
+PE QQ+ +LGE++YP + + + A K+TGMLLEMD +E++ L++ AL+AKV EA+
Sbjct: 692 APEPQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALT 751
Query: 548 VLRSVAQQQANNPADQLA 565
V + + + PA + A
Sbjct: 752 VYDEYVKNKNDAPAGEAA 769
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI + + +R+ KT NVF+KNLD + ++ L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KN+ + DE+ + LF ++G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 272
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 332
Query: 328 R 328
R
Sbjct: 333 R 333
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 363 bits (933), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 248/351 (70%), Gaps = 5/351 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GNIFIKNLDKSID+KA++DTFS F
Sbjct: 70 ADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--R 122
GNILSCK+A D SKG+GFV FE +ESAQ AI+K+NGML+ K+V+VG F + R
Sbjct: 130 GNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLR 189
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E +F NV++KN + E L+K+F ++G ITSA VM D DGKSK FGFV FEN
Sbjct: 190 EMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENP 249
Query: 183 DDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+DA KAV ++ + +R+ YV +AQKK+ER ELK ++EQ E + ++QG+NLY+K
Sbjct: 250 EDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVK 309
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+++D+ LK+ F +G ITS KVM D +G SKG GFV F P+EA++A+ EMNGKM+
Sbjct: 310 NLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMM 369
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGL 350
+KPLYVA+AQRKE+R+A+L +Q+ Q + + M + +Y PG G
Sbjct: 370 CTKPLYVALAQRKEDRKAQLASQYMQRLASIRMHNAGTMHGTVYTPGTGGF 420
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 162/291 (55%), Gaps = 17/291 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N ++ K + + +R+ ++ N+F+KNLD+S ++ + F +G I
Sbjct: 78 TMNFDMMYGKPIRIMW----SQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNIL 133
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D + SK +GFV+FE + A KA+E +NG + ++ YVGK Q + R +E
Sbjct: 134 SCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLRE--- 190
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
M ET +F N+YIKN D +D E L++LF +FG ITS VM D G SKG GF
Sbjct: 191 -----MGETTRRFT--NVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGF 243
Query: 280 VAFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF PE+A +A+ EM+ + + LYV AQ+K ER A L+ ++ Q +
Sbjct: 244 VAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 294
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/400 (48%), Positives = 268/400 (67%), Gaps = 41/400 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK + N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVP 452
Query: 342 MYPPGP-----------SGLGQQFLYGQAPPAIIPPQAGF 370
P P +G+ QF G P +PPQ GF
Sbjct: 453 FNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVPPQGGF 490
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 181
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EVL LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVLPLLESDELFEQHYKEASAA 562
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/400 (48%), Positives = 268/400 (67%), Gaps = 41/400 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK + N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVP 452
Query: 342 MYPPGP-----------SGLGQQFLYGQAPPAIIPPQAGF 370
P P +G+ QF G P +PPQ GF
Sbjct: 453 FNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVPPQGGF 490
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 181
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 174/321 (54%), Positives = 239/321 (74%), Gaps = 2/321 (0%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+ +A+ LN+ +N + RIM+S RDP+IRK G+GNIFIKNL +ID+KALH+TFS+FG
Sbjct: 103 AGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFG 162
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--E 123
+LSCK+A D +G S+GFGFV F+ + A++AI+ +NGML+N +V+V + K++R +
Sbjct: 163 EVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISK 222
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
K F N++VKN+D TTDE+ +++F +YG I SA + +D +GK K FGFVNF + +
Sbjct: 223 LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHN 282
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AAKAVE LNGK+F + YVG+AQKK ER +ELK Q+EQ E + KFQG+NL+IKNL
Sbjct: 283 AAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLD 342
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDDEKLKE F+ +GTITS +VMRD G SKG GFV FS+PEEA++A+ E N +++ K
Sbjct: 343 DSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGK 402
Query: 304 PLYVAVAQRKEERRARLQAQF 324
PLYVA+AQRK+ RR++L Q
Sbjct: 403 PLYVAIAQRKDVRRSQLAQQI 423
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 128 KTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADD 184
K + NN ++V LD + T+ L +F G I+S V RD K+ + +VN+ + +
Sbjct: 44 KVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEA 103
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
KA++ LN + + R + SER+ ++ K N++IKNL
Sbjct: 104 GKKAIQELNYAEINGRPCRI----MWSERDPAIR------------KKGSGNIFIKNLHP 147
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+ID++ L E FS FG + SCKV D +G S+G GFV F +A A+ +NG ++
Sbjct: 148 AIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLE 207
Query: 305 LYVAVAQRKEERRARLQ 321
+YVA+ K++R ++L+
Sbjct: 208 VYVAMHVPKKDRISKLE 224
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 494 RTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
R LGE LY V + +AA K+TGM+L++ +V+ LL++ E + + EA+ +
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEALAAYEN 583
Query: 552 VAQQQ 556
++Q
Sbjct: 584 FKKEQ 588
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/400 (48%), Positives = 268/400 (67%), Gaps = 41/400 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK + N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAARAAAAAGMPGQFMPPMFYG-VMPPRGVP 452
Query: 342 MYPPGP-----------SGLGQQFLYGQAPPAIIPPQAGF 370
P P +G+ QF G P +PPQ GF
Sbjct: 453 FNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVPPQGGF 490
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 181
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/400 (48%), Positives = 268/400 (67%), Gaps = 41/400 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK + N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVP 452
Query: 342 MYPPGP-----------SGLGQQFLYGQAPPAIIPPQAGF 370
P P +G+ QF G P +PPQ GF
Sbjct: 453 FNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVPPQGGF 490
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 181
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 3/323 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + NK IRIM+S RDPS+R+SG GN+FIKNLD++ID+KA++DTFS+F
Sbjct: 54 ADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD G SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 114 GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK 173
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E DE LK+ F YG ITS VM DGKSK FGFV FE
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETT 233
Query: 183 DDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ ++ + G+NLY+KN
Sbjct: 234 EAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKN 293
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDD++L+ FS +G ITS KVM D G SKG GFV F+ EA+ A+ E+NG+++
Sbjct: 294 LDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVG 353
Query: 302 SKPLYVAVAQRKEERRARLQAQF 324
SKPLYVA+AQRKEER+A L +Q+
Sbjct: 354 SKPLYVALAQRKEERKAHLASQY 376
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 164/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + ++ L D FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N L+ +K + + +R+ ++ NVF+KNLD + ++ + F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 249/667 (37%), Positives = 349/667 (52%), Gaps = 122/667 (18%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 114 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 173
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 174 SCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 233
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+++ TDE+ + +F +YG ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 234 MKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAA 293
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+ AVEALN + ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 294 SAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 353
Query: 246 IDDEKLKELFSEFGTITSCKVMRD-----PSGISKGSGF----------------VAFST 284
IDDEKL+ELFS +G ITS KVMR+ P+ KG + S
Sbjct: 354 IDDEKLRELFSSYGNITSAKVMREAIVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSE 413
Query: 285 PEEASRALAEMNGKMIVSKP--------------------------------------LY 306
E+ S++ + GK +KP LY
Sbjct: 414 SEDKSKSEEKSEGKTESAKPEKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLY 473
Query: 307 VAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
VA+AQRK+ R+++L+A Q A G + P P G G Q FL G
Sbjct: 474 VALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQ-QGFLPGAQ 532
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAP--MPNF--------------FVPVVSQGQQGQR 403
QAG ++PGM P G P P F P + G QG
Sbjct: 533 RGMQFAGQAGM-----VMPGM-PGGRPGQFPQFPGQQGGRGMNPNQPLPPNFAMGSQGIP 586
Query: 404 PGGRRGAG--------PVQQTQQ------PLPIMPHQMPP--------RG--HAYRYPLG 439
G + AG + Q Q MPP RG A + G
Sbjct: 587 MGAMQSAGIPNGLNYSQISQVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGGPGAPGFAQG 646
Query: 440 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE-QQRTLLG 498
RNM GIPR +A+ +++ A+ NA+PE QQ+ +LG
Sbjct: 647 RNMPIQQGGRAGPGGRGQGAPGQGGIPRDEAAGS-----GSINLAVFNAAPEPQQKQMLG 701
Query: 499 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 558
E++YP + + + A K+TGMLLEMD +E++ L++ AL+AKV EA+ V + + +
Sbjct: 702 EAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVYDEYVKNKND 761
Query: 559 NPADQLA 565
P + A
Sbjct: 762 APTGEAA 768
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI + + +R+ KT NVF+KNLD + ++ L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KN+ + DE+ + LF ++G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 272
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 332
Query: 328 R 328
R
Sbjct: 333 R 333
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 194/400 (48%), Positives = 268/400 (67%), Gaps = 41/400 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK + N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVP 452
Query: 342 MYPPGP-----------SGLGQQFLYGQAPPAIIPPQAGF 370
P P +G+ QF G P +PPQ GF
Sbjct: 453 FNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVPPQGGF 490
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 181
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
++QR LGE LY V + +AA K+TGM+L++ EV LLES E
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDE 550
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 222/509 (43%), Positives = 287/509 (56%), Gaps = 105/509 (20%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKNL+ T+E+ +++F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVE LN K++ ++ YVG+AQKK ERE+EL+ Q E A E K+QG+NLY+KNL D
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSG--------------------------------- 272
IDDEKL++LF FG ITS +VMRD G
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDS 409
Query: 273 -------------------ISKGSGF--VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ K GF V FS P+EAS+A+ EMN +M+ KPLYVA+AQ
Sbjct: 410 AEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 312 RKEERRARLQAQF-------SQMRPVAMGPSVPPRMP--MYPPGPSGLGQQFLYGQAPPA 362
RK+ R+++L+A Q A G S P P YPPG G
Sbjct: 470 RKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGF------------ 517
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP------GGRRGAGPVQQT 416
IP A G GM A A P +P + G+ GQ P GGR AGP QQ
Sbjct: 518 -IPANAQRG-------GM--AFAQQPGMVLPGMPGGRPGQYPGGFPQQGGRGLAGPNQQL 567
Query: 417 --------QQPLPIMPHQMP---PRGHAY 434
Q LPI Q P P G Y
Sbjct: 568 PPNAFGLGAQGLPIGALQGPGGIPNGLTY 596
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 158/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KNL + +E+ +ELF ++G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV F + A+ A+ ++N K + LYV AQ+K ER L+ Q
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAA 328
Query: 328 R 328
R
Sbjct: 329 R 329
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 115 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 158
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 159 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 218
Query: 312 RKEERRAR---LQAQFSQMRPVAMGPSV 336
K++R+++ ++A F+ + + P V
Sbjct: 219 AKKDRQSKFEEMKANFTNVYVKNLEPEV 246
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 183/359 (50%), Positives = 248/359 (69%), Gaps = 31/359 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A R+LD LN+T + + RIM+ HRDPS+RKSG GNIF+KNLDK+ID+KAL+DTFS
Sbjct: 135 IQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSL 194
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A D +G SKG+GFV +EN+ESA++AIDK+NGMLI K V+VG F+R+ ER+
Sbjct: 195 FGNILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERD 254
Query: 124 TVAIKTKFNNVFVKNLDESTTDE-DLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+A +TK+ NV++KN+ + DE L++ F +YG+ITS VV +D G + F F NF +
Sbjct: 255 NLA-ETKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVVRKDPKG--RLFAFCNFADH 311
Query: 183 DDAAKAVEALNGKKFDD---------------------RE----WYVGKAQKKSEREQEL 217
D A AVEALNGK+ D RE +VG Q K+ R L
Sbjct: 312 DSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKDEEGQKREGEQILFVGPHQSKAHRSAML 371
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
+ +FEQ ++ D+FQG+NLYIKN+ DSIDDEKL++LF FG+ITS KVMRD G+S+
Sbjct: 372 RAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCF 431
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS--QMRPVAMGP 334
GFV F +PEEA++A+ EM+ K++ KPLYV +A+R+E+R RLQ +F +RP A P
Sbjct: 432 GFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRFRLPSLRPAAALP 490
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ +L + + L E+F+ G +TS +V RD + S G +V + ++A R
Sbjct: 81 FVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAER 140
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
+L +N +I +P + R
Sbjct: 141 SLDTLNYTVIKGQPCRIMWCHR 162
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 222/509 (43%), Positives = 287/509 (56%), Gaps = 105/509 (20%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKNL+ T+E+ +++F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVE LN K++ ++ YVG+AQKK ERE+EL+ Q E A E K+QG+NLY+KNL D
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSG--------------------------------- 272
IDDEKL++LF FG ITS +VMRD G
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDS 409
Query: 273 -------------------ISKGSGF--VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ K GF V FS P+EAS+A+ EMN +M+ KPLYVA+AQ
Sbjct: 410 AEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 312 RKEERRARLQAQF-------SQMRPVAMGPSVPPRMP--MYPPGPSGLGQQFLYGQAPPA 362
RK+ R+++L+A Q A G S P P YPPG G
Sbjct: 470 RKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGF------------ 517
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP------GGRRGAGPVQQT 416
IP A G GM A A P +P + G+ GQ P GGR AGP QQ
Sbjct: 518 -IPANAQRG-------GM--AFAQQPGMVLPGMPGGRPGQYPGGFPQQGGRGLAGPNQQL 567
Query: 417 --------QQPLPIMPHQMP---PRGHAY 434
Q LPI Q P P G Y
Sbjct: 568 PPNAFGMGAQGLPIGALQGPGGIPNGLTY 596
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 158/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KNL + +E+ +ELF ++G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV F + A+ A+ ++N K + LYV AQ+K ER L+ Q
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAA 328
Query: 328 R 328
R
Sbjct: 329 R 329
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 115 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 158
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 159 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 218
Query: 312 RKEERRAR---LQAQFSQMRPVAMGPSV 336
K++R+++ ++A F+ + + P V
Sbjct: 219 AKKDRQSKFEEMKANFTNVYVKNLEPEV 246
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 247/354 (69%), Gaps = 8/354 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF ++ + +RIM+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS F
Sbjct: 104 ADAERALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLF 163
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+A D G S+G+GFV FE +ESAQ AI+K+NGML++ K+V+VG F + +R
Sbjct: 164 GNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLK 223
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E K+ NVFVKN E E L K+F +YG ITSAVVM D DGK K FGFV + +
Sbjct: 224 ELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADP 283
Query: 183 DDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
D A KAV+ LN K + D + V +AQKKSER +LK ++E +E V ++QG+NLY+K
Sbjct: 284 DAAQKAVDDLNEKTLEGTDLKLSVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVK 343
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
N+ + + DE L+ F+ FGTITS KVM D +G SKG GFV F PEEA+ A+ EMN KM+
Sbjct: 344 NIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMM 403
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGP---SVPPRMPMYPPGPSGL 350
SKPLYVA+AQRKE+RRA+L +Q+ Q + + MG VP P+YP G G
Sbjct: 404 GSKPLYVALAQRKEDRRAQLASQYMQKLATLRMGQQTNGVPGMAPIYPQGQQGF 457
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LYI +L + + L E FS G + S +V RD S +S G +V F P +A RAL
Sbjct: 53 SLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 112
Query: 295 MNGKMIVSKPLYVAVAQRK-EERRA 318
MN + I +P+ + +QR RRA
Sbjct: 113 MNFETIHGRPMRIMWSQRDPAARRA 137
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 361 bits (926), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 197/405 (48%), Positives = 264/405 (65%), Gaps = 42/405 (10%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A A++ LNFTP+ K RIM+S RDPS+RK G GNIFIKNL ID+KAL+DTFS FG
Sbjct: 88 AAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG 147
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
NILS K+ATD +G+SKGFG+V FE ESA AID LNGML+N ++++VG L K+ERE+
Sbjct: 148 NILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESK 207
Query: 126 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+K F NV++KN++ TTD++ +++ ++G S V+ R +G++K FGFVNF N +
Sbjct: 208 FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHE 267
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DA K VE LN +F + YV +AQKK ER+QELK Q+E E + K+QG+NL+IKNL
Sbjct: 268 DAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLD 327
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDD+KL+E F+ +GTITS KVM +G SKG GFV FSTPEEA++A+ E N +++ K
Sbjct: 328 DSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Query: 304 PLYVAVAQRKEERRARLQAQF---SQMR----------------------PVAMGPSVPP 338
PLYVA+AQRK+ RR++L Q +QMR P+ G +PP
Sbjct: 388 PLYVAIAQRKDVRRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYG-VMPP 446
Query: 339 R-MPMYPPGP--SGLG---------QQFLYGQAPPAIIPPQAGFG 371
R +P P P + +G QF G P +PPQ GF
Sbjct: 447 RGVPFNGPNPQMANMGAMPKNGMPPHQFRNG--PVYGVPPQGGFA 489
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +LD S+ L+D FS G + S ++ D + S G+ +V F + ++A+ AI
Sbjct: 34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAI 93
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+KLN I K + +R+ K N+F+KNL ++ L F +G I
Sbjct: 94 EKLNFTPIKGKLCRI----MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNI 149
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S+ V D GKSK FG+V+FE + A++A++ALNG + +E YVG K ERE +
Sbjct: 150 LSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFE 209
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ D++ +EL ++FG S + R P G +K
Sbjct: 210 EMKANF-------------TNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENK 256
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F E+A + + E+N +PLYV AQ+K ER+ L+ Q+ R
Sbjct: 257 GFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATR 309
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKG 276
+G E+ ETV +LY+ +L S+ + L ++FS G ++S +V RD + S G
Sbjct: 22 EGTNEENQSETV----SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLG 77
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
+V F+ + A A+ ++N I K + +QR R +
Sbjct: 78 YAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKK 120
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 491 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY + D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEASAA 560
Query: 549 LRS 551
S
Sbjct: 561 YES 563
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 360 bits (925), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 196/406 (48%), Positives = 268/406 (66%), Gaps = 46/406 (11%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KALHDTFS FGNIL
Sbjct: 96 QAIEKLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNIL 155
Query: 69 SCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV-- 125
SCKIATD +G SKGFGFV FE+ E+A+ AID +NGML+N ++V+V + +++R++
Sbjct: 156 SCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLE 215
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
K F NV++KN+ T +++ ++ F + +TS + +D +GK + FGFVN+E A
Sbjct: 216 EAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGA 275
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AKAVE LNG +F ++ +VG+AQKK ER+QEL+ Q+EQ+ E ++K+QG+NL+IKNL DS
Sbjct: 276 AKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDS 335
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDDE+L+E FS FGTITS KVM +G SKG GFV FSTPEEA++A+ E N +++ KPL
Sbjct: 336 IDDERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 395
Query: 306 YVAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-M 340
YVA+AQRK+ RR++L Q +QMR P+ G +PPR +
Sbjct: 396 YVAIAQRKDVRRSQLAQQIQARNQMRYQQVTAAAAAAAAGMRGQFMPPMFYG-VMPPRGV 454
Query: 341 PMYPPGPSGLG------------QQF----LYGQAPPAIIPPQAGF 370
P P P L QQF +YG PP P QAGF
Sbjct: 455 PFNGPNPQQLAAMGGMPKNGMPPQQFRNGPMYG-VPPQGAPQQAGF 499
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 102/197 (51%), Gaps = 18/197 (9%)
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDA 185
++T +++V LD + ++ L IF G+++S V RD K+ + +VNF + +
Sbjct: 35 VETSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAG 94
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+A+E LN + + +Q+ ++ G N++IKNL
Sbjct: 95 RQAIEKLNYTPIKGQPCRIMWSQRDPSLRKKGSG----------------NIFIKNLHAD 138
Query: 246 IDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
ID++ L + FS FG I SCK+ D +G SKG GFV F + E A A+ +NG ++ +
Sbjct: 139 IDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQE 198
Query: 305 LYVAVAQRKEERRARLQ 321
+YVA +++R+++L+
Sbjct: 199 VYVAPHVSRKDRQSKLE 215
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LLGE LY V + +AA K+TGM+L++ EV+ LLES E + EA
Sbjct: 512 QKQRQLLGEQLYKKVFARTSDEEAAGKITGMILDLPSQEVVPLLESDELFEQHFKEAFAA 571
Query: 549 LRSVAQQQ 556
+ Q+Q
Sbjct: 572 YETFKQEQ 579
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 360 bits (925), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 217/571 (38%), Positives = 323/571 (56%), Gaps = 62/571 (10%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F S A++AL LN T L K +RIM+SHRDP RK+G N+F+KNLD SI+ +L D
Sbjct: 77 FFHPSDASKALACLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDI 136
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
F FGNILSCK+A + +G+SK FGFVQF++ +SA A++ LN +++ K++FV F++K
Sbjct: 137 FCKFGNILSCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKC 195
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
ER+ + +TKF NV+VKNL E T++ ++ F E+G + + V+M+DG+GKS+ FGFVNFE
Sbjct: 196 ERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFE 255
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ D+A KAVEALNG ++ +VG+AQKK+ER++ LK + ++ + + K + NLY+K
Sbjct: 256 SPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE-KEMVNCNIGKEKASNLYVK 314
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL S+DD+KL+E FS G ITS KVMR SG+SKG GFV FST EEA +AL +NG ++
Sbjct: 315 NLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLL 374
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 360
+ LY+A+AQRKE+R+ L+ +SQ GP P
Sbjct: 375 HGRSLYIAMAQRKEDRQRVLRDYYSQYLLQYYGPHFLSSGSSSP---------------- 418
Query: 361 PAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPL 420
VP P P N P++ Q Q G+ G R P Q
Sbjct: 419 ------------DYSFVPFPHPNPTPQINSPQPIICQ-QFGRNLGVMRPFAPQNYQQNFS 465
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV-------PVDMGAGIPRR----- 468
+P + +G+ + +N + F A S +P P + ++
Sbjct: 466 TFIPMKQAQQGNTNNWGYQQNSRTF-----ATSKVPTQGLNYASPSNQKLHFKKKGNNKS 520
Query: 469 -------DASVGQPMPIT--ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
SV + I A S N+ + ++G LYPLV L+ + A K+TGM
Sbjct: 521 GSEEASSKGSVSEKHFIRAPAQSNVWGNS-----KEIIGHHLYPLVHSLQPELAGKITGM 575
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
LLEM+ ++++ LL+SP++L +V +A++ L+
Sbjct: 576 LLEMNNSDIIKLLDSPDSLAVQVEQAVQALK 606
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 160/284 (56%), Gaps = 22/284 (7%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D FS G ++S ++ D SG+S + +V F + A A+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 102 NGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
N + K ++ H R+ + KT N+FVKNLD S L+ IF ++G I
Sbjct: 91 NHTKLMGKPMRIMWSH------RDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNIL 144
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V + +GKSKCFGFV F++ D A A+ ALN D ++ +V K KK ER
Sbjct: 145 SCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER------ 197
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
KE ++ + N+Y+KNLG+ + ++ +++ FSEFG + + +M+D +G S+G GF
Sbjct: 198 ------KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGF 251
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 323
V F +P+EA +A+ +NG M+ SK L+V AQ+K ER+ L+ +
Sbjct: 252 VNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE 295
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 202/469 (43%), Positives = 288/469 (61%), Gaps = 63/469 (13%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VG+ + K++R++
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEE 234
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ TD++ +++F ++G +TS+ + RD +GK + FGFVNF + A
Sbjct: 235 MKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAF 294
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNGK F +E YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D +
Sbjct: 295 KAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDV 354
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+++F+EFG ITS KVMRD
Sbjct: 355 DDEKLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKKAE 414
Query: 272 -------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
G SKG GFV FS P++A++A+AEMN +MI +KPLYVA+AQRK+ R+++L+A
Sbjct: 415 KKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASI 474
Query: 325 SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP-GMRPA 383
+ M + +G+ QQ++ PP P G Q +P G R
Sbjct: 475 QARNQLRMQQAA---------AAAGMPQQYM---QPPVFYAP----GQQPGFIPQGGRGM 518
Query: 384 GAPMPNFFVPVVSQGQQGQRPGG-RRGAGPVQQTQQP-LPIMPHQMPPR 430
P P +P V G+ GQ PG ++G V Q P + +P Q PP+
Sbjct: 519 PFPQPGMPLPNVQGGRPGQFPGYPQQGGRNVPQGIPPNMYGIPGQFPPQ 567
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 159/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 118 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+ +
Sbjct: 174 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFE 233
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+G + D++ +ELF +FG +TS + RD G +
Sbjct: 234 EMKANF-------------TNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPR 280
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A +A+ ++NGK + LYV AQ+K ER L+ + R
Sbjct: 281 GFGFVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAAR 333
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 496 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
+LGE ++P ++ + + A K+TGMLLEMD +E+++L+E ALKAKV EA+ V +
Sbjct: 674 ILGELIFPKIQAINAELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAVYDEYVKS 733
Query: 556 QA 557
QA
Sbjct: 734 QA 735
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 244/634 (38%), Positives = 329/634 (51%), Gaps = 139/634 (21%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 171 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKNLD ++E+ +++F +YG ITSA + RDG+ GKS+ FGF F + A
Sbjct: 231 MKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESA 290
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVE LN K++ ++ YVG+AQKK ERE+EL+ Q E A E K+QG+NLY+KNL D
Sbjct: 291 AAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 350
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSG--------------------------------- 272
IDDEKL++LF FG ITS +VMRD +G
Sbjct: 351 IDDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSAD 410
Query: 273 -----------------ISKGSG--FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
+ K G FV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK
Sbjct: 411 KSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRK 470
Query: 314 EERRARLQAQF-------SQMRPVAMGPSVPPRMP--MYPPG-----PSGLGQQ--FLYG 357
+ R+++L+A Q A G S P P YPPG P+ Q+ +G
Sbjct: 471 DVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAAQRGGMAFG 530
Query: 358 QAPPAIIPPQAGFGYQQQLVPGMRP----AGAPMPNFFVPVVSQGQQGQRPGGRRGAGPV 413
Q P +IP +PG RP AG P GQQG RG P
Sbjct: 531 QQPGMVIPG----------IPGGRPGQFAAGFP-----------GQQGG-----RGINPN 564
Query: 414 QQT--------QQPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 462
QQ Q LPI Q P P G +Y + + F G +P
Sbjct: 565 QQLPPNAFGLGAQGLPIGALQGPGGMPNGLSYPQAIAQVQASFGRGGGGRGQVPGI---- 620
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQ-------RTLLGESLYPLVEQLERDAAAK 515
G+P A+V M A P QQ ++L G+ +
Sbjct: 621 QGMPPNLANV-PGMRAGGQGFAQGRGIPPQQGDPKPNNQSLAGQDHWY------------ 667
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
+ E+L L++ AL+AKV EA+ V
Sbjct: 668 ---AFWKWTNAELLSLVDDDAALRAKVDEAINVY 698
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 157/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KNL + +E+ +ELF ++G ITS + R
Sbjct: 223 DRQSKFEEMKANF-------------TNVYVKNLDTEVSNEEFRELFEKYGEITSASISR 269
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GF F E A+ A+ E+N K + LYV AQ+K ER L+ Q
Sbjct: 270 DGETGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAA 329
Query: 328 R 328
R
Sbjct: 330 R 330
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 177/325 (54%), Positives = 240/325 (73%), Gaps = 5/325 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDKSID+KA++DTFS+F
Sbjct: 63 ADAERALDSMNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ D +G SKG+GFV F +E+A +I+K+NGML+N K+V+VG F+ ++ER
Sbjct: 123 GDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYD 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 181
+ KF NVFVKN + DE L+++F YG I S VM+D G++K FGFV FE+
Sbjct: 182 AMGGQQKKFTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFED 241
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
DA A + LN K + R YVG+AQKK ER+ EL+ +FE E +++QG+NLY+KN
Sbjct: 242 PIDAENACDDLNMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKN 301
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DS+DDE+L++ F FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++
Sbjct: 302 LDDSLDDERLRKEFMPFGTITSAKVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVS 360
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ 326
+KPLYVA+AQRKE+R+A L +QF Q
Sbjct: 361 TKPLYVALAQRKEDRKAHLASQFMQ 385
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 163/290 (56%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L + FSS G ILS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD+S ++ + F +G I
Sbjct: 71 SMNFDVIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK +GFV+F + A K++E +NG + ++ YVGK + ER + G
Sbjct: 127 SCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGG 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278
Q + KF N+++KN GD +DDE L+E+F +G I S KVM+D SG +KG G
Sbjct: 186 QQK--------KF--TNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFG 235
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV F P +A A ++N K I + LYV AQ+K ER+A L+ +F M+
Sbjct: 236 FVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIERQAELRNRFELMK 285
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 358 bits (920), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 177/324 (54%), Positives = 238/324 (73%), Gaps = 7/324 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQNAI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NG++ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYVA+A E R+A L Q+ Q
Sbjct: 361 KPLYVALA---EGRKAILTNQYMQ 381
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P+TA + LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E+L +LESPE
Sbjct: 555 PLTA--SMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPE 612
Query: 537 ALKAKV 542
+L AKV
Sbjct: 613 SLNAKV 618
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 222/560 (39%), Positives = 320/560 (57%), Gaps = 79/560 (14%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ LNF +++K RIM++ R+P+ R+SG GNIFIKNL+K ID+KAL+DTFS+F
Sbjct: 60 ADAKHALEELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAF 119
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCK+A D G+S+G+GFV FE +E AQ AID +NG ++ + V V FL ++ERE
Sbjct: 120 GTILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQ 179
Query: 125 VAIKTKFNNVFVKNL-DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+T + N++VKNL D T++DLKK+F ++GTITS + +D + KS+ FGFVNFEN++
Sbjct: 180 QGGRT-YTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSE 238
Query: 184 DAAKAVEALNGKKFD-DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
A AVEA+N K+ + DR+ +VG+A KK ERE+ELK ++ +E +K + NLYIK+L
Sbjct: 239 AANAAVEAMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHL 298
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+ + ++ L++ FS+FGTITS K+M D +G S+G GFV F + +EA+ A+ EM+G MI
Sbjct: 299 PEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDG 358
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+A RK +R Q Q + R ++P +MPM G P
Sbjct: 359 KPLYVALALRKVDR----QKQLASRR------TMPGQMPM--------------GYLPFM 394
Query: 363 IIPPQAGFGYQQQLVPGM-------------RPAGAPMPNFFVPVVSQGQQGQRPGGRRG 409
+ PPQA P M + AP N + +G + G RG
Sbjct: 395 MPPPQANMMRMGNRFPPMFMMQQQQQQQQQQQQQHAPGMNGNMRGRGRGNPNKGNGRGRG 454
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 469
GP+ QP+P+ Q P P N QD F
Sbjct: 455 QGPMPSQGQPMPM---QSAPSAARVAAPAPNNNQD-EF---------------------- 488
Query: 470 ASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 529
LA+ + +Q+ LLGE L+PL++Q + A K+TGMLL M+ EVL
Sbjct: 489 -------------ANLAHMTDAEQKNLLGEKLFPLIQQEYHERAGKITGMLLGMETAEVL 535
Query: 530 HLLESPEALKAKVAEAMEVL 549
+LL+ + LK + EA ++L
Sbjct: 536 NLLQDQDQLKQRAREAYDLL 555
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 157/292 (53%), Gaps = 20/292 (6%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
++++ +L + L++ FS G+++S ++ D S QS G+ +V ++ A++A+
Sbjct: 7 NASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHAL 66
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN I+DK + +R A ++ N+F+KNL++ ++ L F +GTI
Sbjct: 67 EELNFEKIHDKPCRI----MWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTI 122
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+S+ +GFV+FE +DA KA++ +NGK + V K + EREQ+
Sbjct: 123 LSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGG 182
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
+ N+Y+KNL DS ++ LK+LF +FGTITS + +D + S+G
Sbjct: 183 RTY-------------TNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGF 229
Query: 278 GFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV F E A+ A+ MN K I + L+V A +K ER L+ ++R
Sbjct: 230 GFVNFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIR 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 291
Q +LY+ +L + + L E FS+ G++ S +V RD S S G +V + +A A
Sbjct: 6 QNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHA 65
Query: 292 LAEMNGKMIVSKPLYVAVAQR 312
L E+N + I KP + AQR
Sbjct: 66 LEELNFEKIHDKPCRIMWAQR 86
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 227/604 (37%), Positives = 333/604 (55%), Gaps = 76/604 (12%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RAL+ L + + K +RIM+SHRDPS+RKSG GN+FIKN+D+SID KAL+D FS
Sbjct: 92 VNDARRALEALKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSP 151
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
+G ILSCK+ATD +G+S+G+GFV F+ + +A AI NGM + +K++FV F+R+ ER
Sbjct: 152 YGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERV 211
Query: 124 TVA-----IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
+ + KF N++V+N E+ +E LK+ F +G ITS ++ D G+ F F+N
Sbjct: 212 SSTKLEDGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMMKSDPLGRK--FAFIN 269
Query: 179 FENADDAAKAVEALNGKKFD----DREWYVGKAQKKSE-------------REQELKGQF 221
+ A A+E +NGK F D+ G+ KSE R LK ++
Sbjct: 270 YAENSMAKAAIETMNGKDFSIKSGDKSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKY 329
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
+ E K+QG+NLYIKNL DSI+D +L+ELF FG ITSCKVM D G S G GFV
Sbjct: 330 DSMHAENKSKYQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVC 389
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS-----------QMRPV 330
F +PE+A+ A++EM+ K++ +KPLYV +A+++E+R RLQ ++ + P
Sbjct: 390 FVSPEDATHAVSEMHLKLVHNKPLYVGLAEKREQRLNRLQMRYKVGHNRDGMPMGMLPPH 449
Query: 331 AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAG-------FGYQQQLVPGMRPA 383
M P + +PM P + Q++Y P I P + + ++ Q PG+ P
Sbjct: 450 GMMPPMHMGVPMMP-----VNGQYMYPN--PNIHGPNSSQQNAMMPYQWRHQYHPGIPPV 502
Query: 384 GAPMP------NFFVPVVSQGQQGQRPGGRRGAG-PVQQTQQPLPIMPHQMPPRGHAYRY 436
G +P N VP+ G R G RG PVQ+ Q + G +++
Sbjct: 503 GMQVPFNARGANMPVPMRVYNPMGNR--GVRGQNVPVQKLGQ------NGDKAMGDGFKF 554
Query: 437 -PLGRNMQDF-------PFDMGAGSMLPVPVDMGAGIPRRDA--SVGQPMPITALSTALA 486
P RN + P G + +P RD+ + Q ITA + LA
Sbjct: 555 TPQARNRMEMVQSDHSDPATAGNARAHARATATTSAVPGRDSNDTTFQEAHITAAT--LA 612
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
A P Q+ +LGE L+P++ + + A KVTGM+LEMD +E+L LLES + L AK EA+
Sbjct: 613 AAHPNMQKQMLGEKLFPIIARHNPELAGKVTGMMLEMDNSELLILLESEKQLIAKADEAI 672
Query: 547 EVLR 550
VL+
Sbjct: 673 RVLQ 676
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 17/184 (9%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L T+ L +IF G + S V RD KS + +VN+ N +DA +A+EAL
Sbjct: 43 LYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRALEAL 102
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ ++ + S R+ L+ K N++IKN+ +SID + L
Sbjct: 103 KYNEICGKQVRI----MWSHRDPSLR------------KSGAGNVFIKNIDESIDTKALY 146
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS +G I SCKV D +G S+G GFV F T A+RA+++ NG + +K ++VA R
Sbjct: 147 DAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVR 206
Query: 313 KEER 316
+ ER
Sbjct: 207 RSER 210
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 191/393 (48%), Positives = 263/393 (66%), Gaps = 32/393 (8%)
Query: 11 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
++VLN+ L K +RIM+S RDPS R SG GN+F+KNLD+SID+K L D FS+FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 130
K+A D SG SKG+GFVQF + S A + NG LI ++ + V F+ + + + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRV--- 117
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
F NV+VKNL E+ TD DLK++FGE+G ITSAVVM+DG+GKS+ FGFVNFE A+ A A+E
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFE-QAMKETVDKFQGLNLYIKNLGDSIDDE 249
+NG D++E +VG+AQ+K+ R ++LK +FE + + + +G+NLY+KNL DS+D+
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
KL+ELFSEFGTITSCKVM +GISKG GFV FST EEAS+A+ +MNGKM+ +KP+YV++
Sbjct: 238 KLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 310 AQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ--APPAII--- 364
AQ KE+ + LQ QF+ PP P QQ ++ Q AP ++
Sbjct: 298 AQCKEQHKLHLQTQFNNP----------------PPSPH---QQPIFSQVVAPATMLSQQ 338
Query: 365 PPQAGFGYQQQLVPGMR-PAGAP---MPNFFVP 393
P G+ +Q + G R P P +PNF VP
Sbjct: 339 TPLRGYNFQPYSMCGSRMPNSCPPISIPNFMVP 371
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 203/416 (48%), Positives = 270/416 (64%), Gaps = 24/416 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
S A++ LN+TP+ K RIM+S RDPS+RK+G+GNIFIKNL ID+KALHDTFS FG
Sbjct: 104 SGKVAIEKLNYTPIKGKPCRIMWSQRDPSMRKNGSGNIFIKNLHADIDNKALHDTFSVFG 163
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
NILSCKIATD +G+SKGFGFV FE +A AID +NGM++N +V+V + +++RE+
Sbjct: 164 NILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVAAHVSRKDRESK 223
Query: 126 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
A K F NV+VKN+D T+E+ +++F ++G ITS + +D +GK + FGFVN+EN +
Sbjct: 224 FEAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEKDSEGKFRGFGFVNYENHE 283
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AAKAV+ LN +F ++ YVG+AQKK ER QELK Q+E+A E + K+QG+NL++KNL
Sbjct: 284 SAAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQYEEAKLEKMAKYQGVNLFVKNLD 343
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D+IDDE LK+ F FGTITS KVMR+ +G SKG GFV FS+PEEA+RA+ E N +++ K
Sbjct: 344 DTIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVCFSSPEEATRAITEKNQQIVAGK 403
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRK+ RR++L Q + + P Q YG PP
Sbjct: 404 PLYVALAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMQPMFYGVMPPRG 463
Query: 364 IP-----PQ--AGFGYQQ-----QLVPGMRPAGAPMP----NFFVPVVSQGQQGQR 403
+P PQ AG QQ + GM P GA P FF QQ QR
Sbjct: 464 VPFNGANPQQFAGMPPQQFRNGAPVYAGMPPQGAGAPPRNDQFF------AQQNQR 513
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 17/191 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 191
+++V LD S ++ L IF G ++S V RD K+ + +VNF + D A+E
Sbjct: 52 SLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYAYVNFNDHDSGKVAIEK 111
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + +Q+ + G N++IKNL ID++ L
Sbjct: 112 LNYTPIKGKPCRIMWSQRDPSMRKNGSG----------------NIFIKNLHADIDNKAL 155
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCK+ D +G SKG GFV F AS A+ +NG M+ +YVA
Sbjct: 156 HDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVAAHV 215
Query: 312 RKEERRARLQA 322
+++R ++ +A
Sbjct: 216 SRKDRESKFEA 226
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 57/144 (39%), Gaps = 27/144 (18%)
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFP------FDMGAGSMLPVPVDMGAGIPRRDASVGQ 474
P+ MPPRG + G N Q F F GA +P PR D Q
Sbjct: 453 PMFYGVMPPRGVPFN---GANPQQFAGMPPQQFRNGAPVYAGMPPQGAGAPPRNDQFFAQ 509
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLL 532
+ QR LGE LY V D AA K+TGM+L++ EV+ LL
Sbjct: 510 ----------------QNQRQALGEELYKKVSAKTSDEEAAGKITGMILDLPPQEVMPLL 553
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQ 556
E+ E + EA S ++Q
Sbjct: 554 ENDELFEQHFKEAFAAYESFKKEQ 577
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 180/356 (50%), Positives = 246/356 (69%), Gaps = 31/356 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A R+LD LN+T + + RIM+ HRDPS+RKSG GNIF+KNLDK+ID+KAL+DTFS
Sbjct: 134 IQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSL 193
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A D +G SKG+GFV +EN+ESA++AIDK+NGMLI K V+VG F+R+ ER+
Sbjct: 194 FGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERD 253
Query: 124 TVAIKTKFNNVFVKNLDESTTDED-LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+A + K+ NV++KN+ + DE L++ F ++G+ITS VV +D G + F F NF +
Sbjct: 254 NLA-EAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRKDPKG--RLFAFCNFADH 310
Query: 183 DDAAKAVEALNGKKFDD---------------------RE----WYVGKAQKKSEREQEL 217
D A AVEALNGK+ D RE +VG Q K+ R L
Sbjct: 311 DSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEEGQKREGDQILFVGPHQSKAHRSAML 370
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
+ +FEQ ++ D+FQG+NLYIKN+ DSIDDEKL++LF FG+ITS KVMRD G+S+
Sbjct: 371 RAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCF 430
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS--QMRPVA 331
GFV F +PEEA++A+ EM+ K++ KPLYV +A+R+E+R RLQ +F +RP A
Sbjct: 431 GFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRFRLPSLRPAA 486
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 490 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
P Q+ +LGE L+PL+ + + + A K+TGM+LEMD E+L LLES LKAKV EA+ VL
Sbjct: 705 PSMQKQMLGEKLFPLIARYQPELAGKITGMMLEMDNAELLILLESEAQLKAKVDEALRVL 764
Query: 550 RSVA 553
+ +
Sbjct: 765 QQAS 768
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M F +LY+ +L + + L E+F+ G +TS +V RD + S G +V +
Sbjct: 73 MNAGAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQ 132
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
++A R+L +N +I +P + R R
Sbjct: 133 GIQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLR 166
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 228/583 (39%), Positives = 329/583 (56%), Gaps = 80/583 (13%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + K +RIM+S RDPS+R+SG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRRSG--------------------------- 97
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
+ D +G SKG+GFV FE E+A+ AI+K+NG L+ND++VFVG F ++ERE +
Sbjct: 98 -----VVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAEL 151
Query: 126 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
K K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 152 GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 211
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + + YVG+AQKK ER+ ELK +FEQ ++ + ++Q +NLY+KNL D
Sbjct: 212 AQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 271
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 272 DIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 330
Query: 305 LYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQQF 354
LYVA+AQRKEER+A L ++ Q +R V P + P P P G P +
Sbjct: 331 LYVALAQRKEERQAHLTNEYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAVPQTQNRAA 389
Query: 355 LYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407
Y + A + P + Q Q G+RPA +P F + Q + +
Sbjct: 390 YYPPSQIAQLRPSPCWTAQGARPHPFQNKPGGIRPAAPRLP-FSTMRPTSSQVPRVMSTQ 448
Query: 408 RGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVP 458
R A QT P P + PR Y+Y G RN Q
Sbjct: 449 RVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQH------------- 492
Query: 459 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
++ + + ++V T ++ LA+A P++Q+ +LGE L+P ++ + A K+TG
Sbjct: 493 LNAQPQVTMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITG 552
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
MLLE+D +E+LH+LESP++L++KV EA+ VL++ ++A A
Sbjct: 553 MLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQAKEATQKA 595
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 21/239 (8%)
Query: 6 SAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHD 59
+A RA++ +N T LN++ + + + R + G N++IKN + +D + L D
Sbjct: 118 AAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKD 177
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N K ++VG +K
Sbjct: 178 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKK 237
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +
Sbjct: 238 VERQT-ELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMME 296
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L ++ Q M
Sbjct: 297 G-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQRM 354
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P++A RAL MN +I KP+ + +QR
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 187/360 (51%), Positives = 249/360 (69%), Gaps = 17/360 (4%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A RA++ LN+ +N K +RIM+SHRDPS RKSG GNIFIKNLDK+ID KALHDTFS+FG
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG 138
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
ILSCK+ATD +G SKG+GFV FE++ +A AI +N I K V+V F ++ +R
Sbjct: 139 KILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADRPRA 198
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
+T + NVFVKNL D++L K+ E+G ITSAVVM+D G SK FGF+NF++A+ A
Sbjct: 199 --RTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESA 256
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD- 244
AK VE LN ++ + Y G+AQKK+ERE L+ + E++ +E K+Q +NLY+KNL D
Sbjct: 257 AKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDE 316
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR-ALAEMNGKMIVSK 303
+DD+ L+ELF+ GTITSCKVM+D SG SKG GFV F++ +EA+R + EMNGKM+ K
Sbjct: 317 EVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRPPVTEMNGKMVKGK 376
Query: 304 PLYVAVAQRKEERR-----ARLQAQF---SQMRP----VAMGPSVPPRMPMYPPGPSGLG 351
PLYVA+AQRK+ RR A +QA+ + RP M P P MP + PGP G+
Sbjct: 377 PLYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNPMAGMSP-YPGAMPFFAPGPGGMA 435
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 154/286 (53%), Gaps = 26/286 (9%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK---ESAQNA 97
++++ +L+K + L + FSS G + S ++ D + +S G+ +V + + ++A A
Sbjct: 24 SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRA 83
Query: 98 IDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
++ LN ++N K ++ H R+ A K+ N+F+KNLD++ + L F +
Sbjct: 84 METLNYHVVNGKPMRIMWSH------RDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAF 137
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S V D +G SK +GFV+FE+ A +A++ +N KK + + YV QK+++R +
Sbjct: 138 GKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADRPR 197
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
+ N+++KNL I D++L ++ +E G ITS VM+D G SK
Sbjct: 198 A--------------RTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSK 243
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 321
G GF+ F E A++ + +N + + K LY AQ+K ER A L+
Sbjct: 244 GFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLR 289
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 184/319 (57%), Positives = 241/319 (75%), Gaps = 5/319 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRI + RDPS+RKSG GN+FIK LDKSID+KAL+DTFS+F
Sbjct: 62 ADAERALDTMNFDIIKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAF 121
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNI SCKI D G S+G+GFV FE E+A+ AI+K+NGML+N K+VFVG F+ ++ER
Sbjct: 122 GNISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLE 180
Query: 125 VAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM-RDGDGKSKCFGFVNFEN 181
V KFNNV+VKNL E T DE L++IF YG I SA VM D KSK FGFV+FEN
Sbjct: 181 VLDLGMRKFNNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFEN 240
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVEALNG + YVG+AQ K ER+ ELK +FE+ KE ++++QG+NL++KN
Sbjct: 241 PEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKN 300
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDD++L++ F++FGTITS KVM + +G SKG GFV FS+PEEA++A+ EMN K+I
Sbjct: 301 LDDNIDDKRLRKEFAQFGTITSAKVMTE-NGRSKGFGFVYFSSPEEATKAIVEMNEKIIE 359
Query: 302 SKPLYVAVAQRKEERRARL 320
++PLYVA+AQRKE+R+A L
Sbjct: 360 ARPLYVALAQRKEDRKAYL 378
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 161/292 (55%), Gaps = 17/292 (5%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 97
++++++L + L FS+ G +LS ++ D + +S G+ +V F A+ A
Sbjct: 8 AVASLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERA 67
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+D +N +I + + + + +R+ K+ NVF+K LD+S ++ L F +G
Sbjct: 68 LDTMNFDIIKGRPIRITWY----QRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGN 123
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I+S ++ D G S+ +GFV+FE + A A+E +NG + ++ +VG+ + ER + L
Sbjct: 124 ISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVL 182
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKG 276
+ M+ KF N+Y+KNL + DDEKL+E+F +G I S KVM D S SK
Sbjct: 183 ----DLGMR----KFN--NVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQ 232
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV+F PE A +A+ +NG K LYV AQ K ER+A L+ +F ++R
Sbjct: 233 FGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIR 284
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 175/339 (51%), Positives = 234/339 (69%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+ + N + LN K IR+M+SH DPS RKSG GN+F+KNL SID+ LHD F +GN
Sbjct: 66 AIRAMKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGN 125
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ G G+SKG+GFVQFE++ESA NAI+KLNG + DKQ++VG F+RK +R
Sbjct: 126 ILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPG 185
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K+ N+++KNLD T+ L++ F +G I S V+ +D +G SK F FVN+EN DDA
Sbjct: 186 YDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDAR 245
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KA+EA+NG KF + YV +AQKK+EREQ L QFE+ KE + K+Q NLY+KN+ D +
Sbjct: 246 KAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDV 305
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L++LFS GTITS KVMRD GISKG GFV FS PEEA++A+ NG M KPLY
Sbjct: 306 TDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLY 365
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 345
+A+AQRK +R+ +L ++ + G S P +PP
Sbjct: 366 IAIAQRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPP 404
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L D L + F E+ T+ S V RD KS C+G+VNF++ DA +A++
Sbjct: 13 SLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKL 72
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
N + + V + + +G N+++KNL SID+ L
Sbjct: 73 KNNSYLNGKVIRVMWSHPDPSARKSGRG----------------NVFVKNLAGSIDNAGL 116
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+LF ++G I S KV+ G SKG GFV F + E A+ A+ ++NG + K +YV
Sbjct: 117 HDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFV 176
Query: 312 RKEER 316
RK +R
Sbjct: 177 RKGDR 181
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 180/331 (54%), Positives = 242/331 (73%), Gaps = 11/331 (3%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF +QERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEY-----GTITSAVVMRDGDGKSKCFGFV 177
A +F N++VKNL + L+++F ++ G + S VMRD G S+ FGFV
Sbjct: 182 ELGARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFV 241
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF--QGL 235
NFE ++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ ++++ +G+
Sbjct: 242 NFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGV 301
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
NLY+KNL DSI+DEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EM
Sbjct: 302 NLYVKNLDDSINDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEM 360
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
NG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 NGRIVGTKPLYVALAQRKEERKAILTNQYMQ 391
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 167/294 (56%), Gaps = 21/294 (7%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ N+F+KNL++S ++ L F +G I
Sbjct: 71 TMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D G S+ FGFV+FE + A A+ +NG +DR+ +VG + + ERE EL
Sbjct: 127 SCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGA 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF-----GTITSCKVMRDPSGIS 274
+ AM+ T N+Y+KNL +D+ L+ELFS+F G + S KVMRD SG S
Sbjct: 186 R---AMEFT-------NIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHS 235
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F EEA +A+ +MNGK + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 236 RGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMK 289
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 28/246 (11%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY----SHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN++ + + + R+ + R NI++KNL +D L +
Sbjct: 150 AAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGARAMEFTNIYVKNLQVDMDEWGLQE 209
Query: 60 TFSSF-----GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114
FS F G +LS K+ D SG S+GFGFV FE E AQ A+ +NG + + ++VG
Sbjct: 210 LFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVG 269
Query: 115 HFLRKQERETVAIKTKFN---------------NVFVKNLDESTTDEDLKKIFGEYGTIT 159
++ ER+ +K KF N++VKNLD+S DE L+K F YG IT
Sbjct: 270 RAQKRMERQN-ELKRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFSPYGMIT 328
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
SA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L
Sbjct: 329 SAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTN 387
Query: 220 QFEQAM 225
Q+ Q +
Sbjct: 388 QYMQRL 393
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE
Sbjct: 433 PLTA--SMLAAAPLHEQKQMIGERLYPLIYDVHTQLAGKITGMLLEIDNSELLLMLESPE 490
Query: 537 ALKAKV 542
+L AKV
Sbjct: 491 SLNAKV 496
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 244/581 (41%), Positives = 334/581 (57%), Gaps = 78/581 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +N + NK IRIM+S RDPS+R+SG GN+FIKNLD++ +KA++DTFS+F
Sbjct: 52 ADAERALDTMNL--VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRA--NKAIYDTFSAF 107
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD G SKG+GFV E E+A +IDK+NGML+N K+V+VG F+ ++E+E
Sbjct: 108 GNILSCKVATDEKGNSKGYGFVHTE--EAANTSIDKVNGMLLNGKKVYVGKFIPRKEQEE 165
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A F NV+VKN E DE LK+ F YG IT VM DGKSK FGFV FE +
Sbjct: 166 KA--KLFTNVYVKNFTEDFDDEKLKEFFEPYGKITK--VMSKEDGKSKGFGFVAFETTEA 221
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A AV+ALNGK + + YV +AQKK+ER+QELK +FE+ +K+ +F G+NLY+KNL D
Sbjct: 222 AEAAVQALNGKG-EGKSLYVARAQKKAERQQELKRKFEE-LKQKRHEF-GVNLYVKNLDD 278
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+IDD++L+ FS +G ITS KV D G SKG GFV F+ EA+ A+ E+NG+++ S
Sbjct: 279 TIDDDRLRIAFSPYGNITSAKV--DEEGRSKGFGFVCFNPESEATCAVTELNGRVVGS-- 334
Query: 305 LYVAVAQRKEERRARLQAQF------SQMRPVAMGPSVPPR--MPMYPPGPSGLGQQFL- 355
LYVA+AQRKEER+A L +Q+ +M+ + P+ +P P G Q
Sbjct: 335 LYVALAQRKEERKADLASQYMRHMTGMRMQQLGQQPNAASGFFVPTLPSNQRFFGSQVAT 394
Query: 356 -------YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR- 407
+ PPA I G + +P F ++G Q Q G
Sbjct: 395 QMRNTPRWQVRPPAAIQGVQ---AGAAAAGGFQGTAGAVPTQFRSAGARGAQPQVQGTHA 451
Query: 408 --------RGAGPVQQTQQPLPIMPHQMP---------PRGHAYRYPLGRNMQDFPFDMG 450
R G T Q P M Q+P R Y+Y NM++ P
Sbjct: 452 AAAAANNMRNTGARAITGQAAPNM--QIPGAQIAGGAQQRTSNYKYT--SNMRNPPV--- 504
Query: 451 AGSMLPVPVDM-GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
P+P + G + AS+ LANA P++Q+ GE LYP++E +
Sbjct: 505 LHQTQPIPQQLQGKNSEKLIASL------------LANAKPQEQKQ--GERLYPMIEHMH 550
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
+ A K+TGMLLE++ +E+LH+ EALKAKV EA+ VL+
Sbjct: 551 ANLAGKITGMLLEIENSELLHM--DQEALKAKVEEAVAVLQ 589
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 206/470 (43%), Positives = 283/470 (60%), Gaps = 71/470 (15%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 118 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 177
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+VFVGH + K++R++
Sbjct: 178 SCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE 237
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+ TDE+ +++F ++G +TSA + RD D KS+ FGFVNF N + A
Sbjct: 238 MKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHA 297
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AKAV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E K+QG+NLY+KNL D
Sbjct: 298 AKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDD 357
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPS---------------------------------- 271
+DD+KL+ELF+ FG+ITS KVMRD
Sbjct: 358 VDDDKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENTED 417
Query: 272 ---------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
G SKG GFV F+ PEEAS+A+ +MN +M+ +KPLYVA+AQRK+ R+ +L+A
Sbjct: 418 KPKSEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRKDVRKNQLEA 477
Query: 323 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR- 381
+ M + +G+ QQF+ P PP G+ Q GM
Sbjct: 478 SIQARNQIRMQQAA---------AAAGMPQQFM---QTPMFYPPGQQPGFIPQAGRGMAF 525
Query: 382 --PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 429
AG P+P G QG RPG P QQ + P P QMPP
Sbjct: 526 PPQAGMPIP---------GAQGGRPGQFPAGFPPQQAGRGGP-GPQQMPP 565
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 156/294 (53%), Gaps = 22/294 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 61 SASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 121 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 176
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ +VG K +R+ +
Sbjct: 177 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFE 236
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 274
E+K F N+Y+KN+ DE+ +ELF +FG +TS + RD S S
Sbjct: 237 EMKANF-------------TNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKS 283
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 284 RGFGFVNFINHEHAAKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAAR 337
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 50/69 (72%)
Query: 480 ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 539
AL+ L+ P QQ+ LLGE+L+P ++ L+ + A K+TGMLLEM+ E+++L+E AL+
Sbjct: 689 ALAQQLSAVPPAQQKQLLGEALFPKIQVLQPELAGKITGMLLEMENQELVNLIEDDSALR 748
Query: 540 AKVAEAMEV 548
+KV EA+ V
Sbjct: 749 SKVDEALTV 757
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 207/455 (45%), Positives = 289/455 (63%), Gaps = 44/455 (9%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+S A RALD +N+T + +K RIM+S RDP++RKSG GN+F+KNLD SIDHKAL DTFS
Sbjct: 63 VSDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSL 122
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD +G+S+G+G+V +E++++A +AI+K+N M I DK+V+VGHF+R+ ER
Sbjct: 123 FGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTERS 182
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
++ + N++VKN +E L+K F +G ITS DG + FG+VNFE D
Sbjct: 183 G---QSDWTNLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHD 237
Query: 184 DAAKAVEALNG-----------KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 232
A A++ALNG +VG+AQKK ERE+ELK +F+ A E + K+
Sbjct: 238 AAVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKY 297
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 291
QG+NL++KNL D +DD++L+E F+E+GTITS +VMR+P +G S+G GFV FS+PEEA++A
Sbjct: 298 QGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKA 357
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR--------PVAMGPS-VPPRMP- 341
+ EMN K+++ KP++VA+AQRKE RRA+L+AQ +Q R P AMGP+ VPP P
Sbjct: 358 VTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRRTTAPYGAHPGAMGPAGVPPHAPQ 417
Query: 342 -MYPP---GPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 397
++P P G +Y P P G Q PG+ AG P PN V+++
Sbjct: 418 GLHPAHLGAPYGTAMPIMYAAGAPNGHP----MGMTPQGHPGVPIAGVP-PNARGYVMAR 472
Query: 398 GQ-----QGQRPGGRRGAGPVQQTQQPLPIMPHQM 427
G R G G P Q P+ P QM
Sbjct: 473 GSPRGPMTDPRAGFGHGGAPRQGG---YPMHPGQM 504
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 141/297 (47%), Gaps = 33/297 (11%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +L L + F++ G + S ++ D + +S G+ +V F N A+ A+
Sbjct: 11 SASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERAL 70
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D +N LI K + +R+ K+ NVFVKNLD S + L F +G I
Sbjct: 71 DTMNYTLIKSKPCRI----MWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFGNI 126
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+S+ +G+V++E+ D A A+ +N D+E YVG +++ER
Sbjct: 127 LSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTERS---- 182
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
GQ + NLY+KN D+E L++ F FG ITSCK G G
Sbjct: 183 GQSDWT-----------NLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADG--SAFG 229
Query: 279 FVAFSTPEEASRALAEMNG-----------KMIVSKPLYVAVAQRKEERRARLQAQF 324
+V F + A A+ +NG + PL+V AQ+K ER L+A+F
Sbjct: 230 WVNFEAHDAAVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKF 286
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ +L + L E+F+ G + S +V RD + S G +V F +A R
Sbjct: 9 FHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAER 68
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL MN +I SKP + +QR R
Sbjct: 69 ALDTMNYTLIKSKPCRIMWSQRDPTLR 95
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 197/436 (45%), Positives = 273/436 (62%), Gaps = 44/436 (10%)
Query: 11 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
+++LNF L K +RIM+S RDPS R SG GN+F+KNLD+SID+K L D FS+FG +LSC
Sbjct: 1 MEMLNFYKLKGKPMRIMFSERDPSKRLSGRGNVFVKNLDESIDNKQLSDMFSAFGKVLSC 60
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 130
K+ D SG SKG+GFVQF ++ S A + NG LI ++ + V F+ +++ + +
Sbjct: 61 KVVRDASGVSKGYGFVQFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRRQWDESRV--- 117
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
F NV+VKNL E+TTD+DLK IF E+G ITSAVVM+D +GKS+ FGFVNFE A+ A A++
Sbjct: 118 FTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAID 177
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFE-QAMKETVDKFQGLNLYIKNLGDSIDDE 249
+NG D++E +VG+AQ+K R Q+LK F+ + +K + +G NLY+KNL S+D+
Sbjct: 178 KMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNT 237
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
KL+ELFSEFGTI SCKVM P+ ISKG GFV FST EEAS+A+ +MNGK++ +KP+YV++
Sbjct: 238 KLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSL 297
Query: 310 AQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA-PPAIIPP-- 366
AQ KEE + L QF+ + + ++ P +P ++ QA PP IP
Sbjct: 298 AQCKEEHKLHLHTQFNNLPWNVVSSTIAPSPHQHP----------IFSQAWPPMSIPNTM 347
Query: 367 QAGFGYQQQLVPGMRPAGA----PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI 422
Q + +Q + G R + + MPNF VP Q RP I
Sbjct: 348 QRVYNFQSYFMCGSRMSNSCPPMSMPNFMVP------QPFRPT----------------I 385
Query: 423 MPHQMPPRGHAYRYPL 438
PH PP G Y +PL
Sbjct: 386 YPHA-PPVGLHYGFPL 400
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/367 (48%), Positives = 242/367 (65%), Gaps = 53/367 (14%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 104 KALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K+ER +
Sbjct: 164 SCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D +DED + +F ++G ITSA + RD GKS+ FGFVN+ + A+
Sbjct: 224 MKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAAS 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ALN F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D +
Sbjct: 284 AAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDV 343
Query: 247 DDEKLKELFSEFGTITSCKVMRD--PSGIS------------------------------ 274
DDEKL+++F+ FGTITS KVMRD P+ S
Sbjct: 344 DDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEESEEAKDESKEDSDDKK 403
Query: 275 -------------------KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
KG GFV FS P+EA++A+ EMN KMI +KPLYVA+AQRK+
Sbjct: 404 DEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDV 463
Query: 316 RRARLQA 322
R+ +L+A
Sbjct: 464 RKNQLEA 470
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + + E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K ER +
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + DE ++LF + G ITS + RD G S+
Sbjct: 223 EMKANF-------------TNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSR 269
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
GKSK FGFV F N D+A KAV +N K +++ YV AQ+K R+ +L+ +
Sbjct: 420 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEATIQ 473
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 218/515 (42%), Positives = 313/515 (60%), Gaps = 45/515 (8%)
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
+CK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A
Sbjct: 1 ACKVVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 59
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 60 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 119
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D I
Sbjct: 120 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 179
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLY
Sbjct: 180 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 238
Query: 307 VAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPG------PSGLGQQFLY 356
VA+AQRKEER+A L Q+ Q +R V P + P P P G P + Y
Sbjct: 239 VALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNRAAYY 297
Query: 357 GQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRG 409
+ A + P + Q Q +PG +RPA AP P F + Q + +R
Sbjct: 298 PPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRV 356
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 469
A QT P P A P R + + + G + P P+
Sbjct: 357 ANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ-- 403
Query: 470 ASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE
Sbjct: 404 VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLE 461
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 462 IDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 496
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 21/239 (8%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L D
Sbjct: 24 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 83
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 84 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 143
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +
Sbjct: 144 VERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 202
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 203 G-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 260
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 204/471 (43%), Positives = 288/471 (61%), Gaps = 67/471 (14%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+TP+ + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 115 KALEELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VG+ + K++R++
Sbjct: 175 SCKVAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEE 234
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ TD + +++F +YG +TS+ + RD +GKS+ FGFVNF + A
Sbjct: 235 MKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAY 294
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LNG F +E YVG+AQKK ERE+EL+ +E A E K+QG+NLYIKNL D +
Sbjct: 295 KAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDV 354
Query: 247 DDEKLKELFSEFGTITSCKVMRDP------------------------------------ 270
DD+KL+++FSEFG ITS KVMRD
Sbjct: 355 DDDKLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKK 414
Query: 271 --------SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
G SKG GFV FS P++A++A+AEMN +MI +KPLYVA+AQRK+ R+++L+A
Sbjct: 415 AEKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEA 474
Query: 323 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP-GMR 381
+ M + +G+ QQF+ PP P G Q +P G R
Sbjct: 475 SIQARNQLRMQQAA---------AAAGMPQQFM---QPPVFYAP----GQQPGFIPQGGR 518
Query: 382 PAGAPMPNFFVPVVSQGQQGQRPG-GRRGAGPVQQTQQP-LPIMPHQMPPR 430
G P P +P+ G+ GQ PG ++G V Q P + +P Q PP+
Sbjct: 519 --GMPFPQPGMPLPQGGRPGQFPGYPQQGGRNVPQGMPPNMYGLPGQFPPQ 567
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN I + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 118 EELNYTPIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+ +
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFE 233
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + D + +ELF ++G +TS + RD G S+
Sbjct: 234 EMKANF-------------TNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSR 280
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A +A+ E+NG + LYV AQ+K ER L+ + R
Sbjct: 281 GFGFVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAAR 333
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 496 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
+LGE ++P ++ + + A K+TGMLLEMD TE+++L+E ALKAKV EA+ V +
Sbjct: 673 ILGELIFPKIQAINSELAGKITGMLLEMDNTELVNLIEDEAALKAKVDEALAVYDEYVKS 732
Query: 556 QANNP 560
Q P
Sbjct: 733 QGTGP 737
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 69/179 (38%), Gaps = 60/179 (33%)
Query: 6 SAARALDVLNFTPLNNKSI---RIMYSH-RDPSIRKSGTG------------NIFIKNLD 49
+A +A+D LN + + R H R+ +RKS N++IKNLD
Sbjct: 292 AAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLD 351
Query: 50 KSIDHKALHDTFSSFGNILSCKIATDG--------------------------------- 76
+D L FS FG I S K+ D
Sbjct: 352 DDVDDDKLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENA 411
Query: 77 -----------SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+SKGFGFV F N + A A+ ++N +IN+K ++V RK R++
Sbjct: 412 EKKAEKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKS 470
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 213/459 (46%), Positives = 271/459 (59%), Gaps = 54/459 (11%)
Query: 3 MLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFS 62
L +A RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK ID+K+++DTFS
Sbjct: 98 FLITAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFS 157
Query: 63 SFGNILSCK-----------IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
FGNILSCK +A D G SKG+GFV FE +E+AQNAI K+NGML+ K+V
Sbjct: 158 LFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKV 217
Query: 112 FVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
FVG F ++ RE KF NV+VKN + E L+K+F +YG ITS VM DG
Sbjct: 218 FVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYNKETLEKLFAKYGAITSCDVMTS-DG 276
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKE 227
KSK FGFV F ++A AV+ALN D D + +V +AQKKSER ELK + EQ E
Sbjct: 277 KSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSERHAELKKKHEQHKVE 336
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK--------------VMRDPSGI 273
+ K+QG+NLY+KNL +S+DDE LK+ F FG ITS K VM D +G
Sbjct: 337 RMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVGLVPLEFFISLFQVMTDENGR 396
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 333
SKG GFV F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 397 SKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRM 456
Query: 334 PSVPPRMPMYPPGPSGLG--------QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGA 385
S P MY P +G G QQ + P P +G Q Q
Sbjct: 457 HSNVPGGGMYNPAQTGPGYYVANPMQQQRNFAGGPQIARPGGGRWGQQNQY--------- 507
Query: 386 PMPNFFV----PVVSQGQQGQRPGGRRGA--GPVQQTQQ 418
PM N ++ P V + G RP ++G GP QQ Q
Sbjct: 508 PMQNQYMMAQGPGVYPNRMG-RPQNQQGGPRGPPQQYSQ 545
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 167/328 (50%), Gaps = 45/328 (13%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFE 89
++P+ ++++ +L ++ L + FS+ G +LS ++ D + + S G+ +V F+
Sbjct: 22 QNPTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQ 81
Query: 90 NKE----------------SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 133
+A+ A+D +N ++ K + + +R+ ++ N
Sbjct: 82 QPADGKSFFQFMSFLTFLITAERAMDTMNFEALHGKPMRI----MWSQRDPAMRRSGAGN 137
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSA-----------VVMRDGDGKSKCFGFVNFENA 182
+F+KNLD+ ++ + F +G I S VV D +G SK +GFV+FE
Sbjct: 138 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETE 197
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A A++ +NG ++ +VGK Q +++R +EL ET KF N+Y+KN
Sbjct: 198 EAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--------GETAKKF--TNVYVKNF 247
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
GD + E L++LF+++G ITSC VM G SKG GFVAF+ PEEA A+ +N +
Sbjct: 248 GDHYNKETLEKLFAKYGAITSCDVMTS-DGKSKGFGFVAFAQPEEAEAAVQALNDSAVDG 306
Query: 303 K--PLYVAVAQRKEERRARLQAQFSQMR 328
L+V AQ+K ER A L+ + Q +
Sbjct: 307 SDLKLHVCRAQKKSERHAELKKKHEQHK 334
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 197/413 (47%), Positives = 273/413 (66%), Gaps = 42/413 (10%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD +NFT + +++ RIM+S RDPS+R+SG GNIF+KNLD+++D+KAL+DTFS
Sbjct: 93 VADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSL 152
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD +G+SKG+G+V +E SA AI K+NGMLI KQV VGHF+R+ R
Sbjct: 153 FGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVRRDNR- 211
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM---RDGDG----------- 169
A + + N++VK L S D L++ F ++G +TS V ++G G
Sbjct: 212 --AGQADWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGE 269
Query: 170 -KSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQKKSEREQELKGQFEQA 224
KS+ FGFVNFE + A KA+EALN + D E Y +AQKKSER +EL+ + +Q
Sbjct: 270 GKSRGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQV 329
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI--SKGSGFVAF 282
E ++KFQG+N+Y+KNL + + ++ ++E F+ +GTITS +VM D S SKG GFV F
Sbjct: 330 KMERMNKFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCF 389
Query: 283 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-MP 341
S PEEA++A+ EMNGKM+++KP+YVA+AQR+E RR +L+AQF+Q R M PPR MP
Sbjct: 390 SAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQ-RTGGM----PPRGMP 444
Query: 342 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ--QQLVPGMRPAG--APMPNF 390
M P G Q +YG P + Q G Q Q ++P M P G PMP +
Sbjct: 445 MAP------GAQGMYGM--PYWMGAQPGMPQQPRQFMMPQMMPRGPRGPMPAY 489
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 148/309 (47%), Gaps = 39/309 (12%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +L K + L + FS G + S ++ D + +S G+ +V F N A+ A+
Sbjct: 41 SASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERAL 100
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D +N I D+ + +R+ ++ N+FVKNLDE+ ++ L F +G I
Sbjct: 101 DTMNFTTIKDQACRI----MWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNI 156
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G+SK +G+V++E A A+ +NG ++ +VG ++ R
Sbjct: 157 LSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVRRDNR----A 212
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-------- 270
GQ + NLY+K L S DD KL+E F + G +TSCKV P
Sbjct: 213 GQADWT-----------NLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDES 261
Query: 271 -------SGISKGSGFVAFSTPEEASRALAEMNGKMI----VSKPLYVAVAQRKEERRAR 319
G S+G GFV F E A +A+ +N + + LY A AQ+K ER
Sbjct: 262 KEKGKGGEGKSRGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARE 321
Query: 320 LQAQFSQMR 328
LQ++ Q++
Sbjct: 322 LQSKHDQVK 330
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
+ +LY+ +L + + L E+FS+ G + S +V RD + S G +V F +A R
Sbjct: 39 YHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAER 98
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL MN I + + +QR
Sbjct: 99 ALDTMNFTTIKDQACRIMWSQR 120
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 198/453 (43%), Positives = 270/453 (59%), Gaps = 41/453 (9%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIK-------------------- 46
A+ A++ N T L+ K IR+M+SHRDP R+SG GN+F+K
Sbjct: 66 ASHAIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCL 125
Query: 47 NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 106
NL SID+ L F FGNILSCK+ G+SKG+GFVQFE++E A AI+KLNG +I
Sbjct: 126 NLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFII 185
Query: 107 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
+ KQ++ G F+RK +R K+ N+++KNLD T+E L++ F E+G I S V+ +D
Sbjct: 186 DGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKD 245
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
+G S+ FGFVNFE+ +DA +A+EALNG + + YV +AQKK+EREQ L+ QFE+
Sbjct: 246 ENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRN 305
Query: 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
E + K++G N+Y+KN+ D+++D+ L+E FS G ITS K+MRD GISKG GFV FSTP+
Sbjct: 306 EQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPD 365
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPG 346
EAS+A+ +G M KPLYVA+AQRKE+R+A+LQ ++Q GPS P YPP
Sbjct: 366 EASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGYPP- 424
Query: 347 PSGLGQQFLYGQAPPAIIPPQAGFGYQ----------QQLVPGMRPAGAPMPNFFVPVVS 396
LY APP +IPP+ G YQ L+P RPA P P +P
Sbjct: 425 --------LYYTAPPGVIPPRQGLMYQPLGLRTGWRANNLIPPTRPAFQPSPIPLMPNTP 476
Query: 397 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 429
+ + R GR Q MPH P
Sbjct: 477 RQHRQNR--GRTNGHIPQGGGHSTAFMPHLQQP 507
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 163/309 (52%), Gaps = 37/309 (11%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAID 99
++++ +L I L D FS F ++ S +I D S G+S +G+V F + + A +AI+
Sbjct: 12 ASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIE 71
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVK--------------------NL 139
N +++ K + V R+ A ++ NVFVK NL
Sbjct: 72 AKNHTMLHGKVIRV----MWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNL 127
Query: 140 DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199
+S + L+ +F ++G I S V+ DGKSK +GFV FE+ + A A+E LNG D
Sbjct: 128 SDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDG 187
Query: 200 REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 259
++ Y GK +K++R + K+ NLYIKNL + +E L+E F EFG
Sbjct: 188 KQIYAGKFVRKTDR----------VLPNPDAKYT--NLYIKNLDPDVTEEALREKFFEFG 235
Query: 260 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
I S + +D +G+S+G GFV F +PE+A RAL +NG + SK LYVA AQ+K ER
Sbjct: 236 KIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQL 295
Query: 320 LQAQFSQMR 328
L+ QF + R
Sbjct: 296 LRRQFEEKR 304
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 225/588 (38%), Positives = 328/588 (55%), Gaps = 46/588 (7%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
+ + A AL+ LN+ + RIM+S++DP++RKSG GNIF+KNLD+SID KA +DTF
Sbjct: 80 YSVQDAEAALESLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTF 139
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S FG ILSCK+A D +G SKG+GFV ++ +ESA+ AI+K+NGM+I K+V V F++KQ+
Sbjct: 140 SHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQD 199
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R+ ++ F N++V+N S +E LK+ +YG ITS ++ DG G+ F FVNF
Sbjct: 200 RDPASVDV-FTNLYVRNFPVSWDEEALKQFLDKYGEITSMMIKEDGKGRK--FAFVNFAE 256
Query: 182 ADDAAKAVEALNGKKFDD--REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ A +AVEALNG K ++ V Q K++R+ LK Q+ + ++ NLYI
Sbjct: 257 PEMAKEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYI 316
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL DS DE L+ELF +FG+ITSCK+MRD SG+S+G GFV FS PEEA++A+A M+ K+
Sbjct: 317 KNLDDSFTDESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKI 376
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG----PSVPPRMPMYPPGPSGLGQQFL 355
+ KPLYV +A++KE+R +RLQ +M PSV +P Y GQ F
Sbjct: 377 VKGKPLYVGLAEKKEQRLSRLQQSSRSRNGDSMNQGPIPSVLHGVPGYQDASGFYGQGFR 436
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGM-----RPAGAPMPNFFV--------PVVSQGQQGQ 402
G + Y Q +P M +G+P+P P + G QG
Sbjct: 437 GGPQGVGVPGRGVRM-YPQSHIPVMPRNMHLSSGSPLPPNNAGLSGMQGSPNLHSGMQGS 495
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMP---------PRGHAYRYPLGRN--MQDFPF---- 447
P R G + + PH P P R +N + F F
Sbjct: 496 -PSLRSGLQGTPNIHPGIQVTPHGAPNIHPAMPTIPNVIQRRVMPTKNAPVSGFKFTAQA 554
Query: 448 ---DMGAGSMLPVPVDMGAGIPRR--DASVGQPMPITALSTALANASPEQQRTLLGESLY 502
++G+ + VP+ G+P + QP +T L + + ++Q ++GE L+
Sbjct: 555 RNREVGSTMSMGVPMHPNMGMPTQAPGQQTMQPAMQGNATTHLDDTAFQKQ--MIGERLF 612
Query: 503 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
P+V + D A K+TGM+LE+D E+L LLE LKAK+ EA+ VL+
Sbjct: 613 PIVARDNPDLAGKITGMMLEIDNAELLALLEDDARLKAKIDEAIRVLK 660
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 25/189 (13%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L ++F G ++S V RD KS + +VN+ + DA A+E+
Sbjct: 32 SLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALES 91
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE----TVDKFQGLNLYIKNLGDSID 247
LN Y+ ++KG + M T+ K N+++KNL SID
Sbjct: 92 LN---------YI-----------DIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSID 131
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
+ + FS FG I SCKV D +G+SKG GFV + T E A A+ ++NG +I K + V
Sbjct: 132 TKAFYDTFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEV 191
Query: 308 AVAQRKEER 316
+ +K++R
Sbjct: 192 SPFIKKQDR 200
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/326 (53%), Positives = 235/326 (72%), Gaps = 4/326 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF ++ + +RIM+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS F
Sbjct: 107 ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLF 166
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK+ATD G SKG+GFV FE + SA AI+K+NGML++DK+VFVG F + +R
Sbjct: 167 GNILSCKVATDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVFVGKFQPRAQRMK 226
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E K+ NVF+KN + ++ L ++F +YG ITSAVVM D GK K FGFV F +
Sbjct: 227 ELGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDP 286
Query: 183 DDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
D A KAV+ LN + D + V +AQKKSER ELK ++E +E V ++QG+NLY+K
Sbjct: 287 DAAIKAVDTLNESTLEGTDLKLSVCRAQKKSERTAELKRKYEALKQERVQRYQGVNLYVK 346
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
N+ + + D+ L+E F+ FG+ITS KVM D +G SKG GFV F PEEA+ A+ EMN KMI
Sbjct: 347 NIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMI 406
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQ 326
+KPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 407 GAKPLYVALAQRKEDRRAQLASQYMQ 432
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPE 536
T S LA A+P++Q+ LLGE +Y L+E++ A K+TGM+LE+D E++ +L+ +
Sbjct: 641 TLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDED 700
Query: 537 ALKAKVAEAMEVLRSVAQQQANNPA 561
++KV EA VL S AQ+ AN PA
Sbjct: 701 LFRSKVEEAFTVL-SNAQKNANGPA 724
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LYI +L + + L E FS G + S +V RD S +S G +V F P +A RAL
Sbjct: 56 SLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 115
Query: 295 MNGKMIVSKPLYVAVAQRK-EERRA 318
MN ++I +P+ + +QR RRA
Sbjct: 116 MNFEVIHGRPMRIMWSQRDPAARRA 140
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/399 (46%), Positives = 248/399 (62%), Gaps = 17/399 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+ + N + LN K IR+M+ HRDP+ RKSG GN+F+KNL SID+ LHD F +GN
Sbjct: 66 AIRAIKLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGN 125
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ G+SKG+GFVQFE +ESA NAI+KLNG + +KQ++VG F+RK +R
Sbjct: 126 ILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPG 185
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K+ N+++KNLD T+ L++ F +G I S + +D +G SK F FVN+EN DDA
Sbjct: 186 YDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAK 245
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KA+EA+NG +F + YV +AQKK+EREQ L QFE+ KE + K+Q NLY+KN+ D +
Sbjct: 246 KAMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDV 305
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++L++LFS GTITS KVMRD GISKG GFV FS PEEA++A+ NG KPLY
Sbjct: 306 TDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLY 365
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
+A+AQRK+ER+ +L ++ + G S P PP Y A +
Sbjct: 366 IAIAQRKKERKTQLNLHYAPQQAGLDGSSTPVIPGGVPP----------YFYHSVASLMF 415
Query: 367 QAGFGYQ-QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP 404
Q+G YQ L G R N FVP Q Q P
Sbjct: 416 QSGLLYQPLGLRSGWR------ANDFVPPARSFQHSQVP 448
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 17/185 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L + L F E+G+I S V RD S C+G+VNF + DA +A++
Sbjct: 13 SIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIKL 72
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
N + + V + + +G N+++KNL SID+ L
Sbjct: 73 RNNSYLNGKVIRVMWLHRDPNARKSGRG----------------NVFVKNLAGSIDNAGL 116
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+LF ++G I S KV+ G SKG GFV F E A+ A+ ++NG + +K +YV
Sbjct: 117 HDLFKKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFV 176
Query: 312 RKEER 316
RK +R
Sbjct: 177 RKGDR 181
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 220/569 (38%), Positives = 325/569 (57%), Gaps = 70/569 (12%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
G + K +++ + K +H L +A D +G SKG+GFV FE K+SA +I+K
Sbjct: 404 GGVQTKCKEQNSNIKYIHCYAHCLNLALVDSVAQDETGNSKGYGFVHFETKQSATQSIEK 463
Query: 101 LNGMLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+NGML+N K+VFVG F+ + +RE + + K + NV++KN+DE+ +++L ++F +YGTI
Sbjct: 464 VNGMLLNGKKVFVGRFVGRNDREKELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTI 523
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQEL 217
TS VM DG S+ FGFV FE+ +A KAV L+GKK + + +YV +AQKK+ER+QEL
Sbjct: 524 TSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQEL 583
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
K +FEQ E ++++QG+NLY+KNL D+IDDE+L+ FS FGTI S KVM D G SKG
Sbjct: 584 KRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRSKGF 642
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG 333
GFV FS+PEEA++A+ +MNG+++ +KPLYV +AQRK++R+A L +Q+SQ MR ++G
Sbjct: 643 GFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQRNTNMRMQSIG 702
Query: 334 PSVPPRMPMYPPGPSG------LGQ-QFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 386
P+Y PG S + Q Q+ YG I Q + +Q Q+ G AP
Sbjct: 703 -------PIYQPGASNGYFVPTIPQPQYFYGPTQMTQIRSQPRWAFQSQVRAGTPQTAAP 755
Query: 387 -MPNFFVPVVSQGQQGQRPGGRRGAGP----VQQTQQPLPIMPHQMP------------- 428
PN + G + P G++ A V +P+ +MP
Sbjct: 756 GYPNMATQHQNIGARAPVPAGQQAALARNVMVDTNARPISTAQQKMPGAVSAGSVHVPGA 815
Query: 429 -PRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPVD-MGAGIPRRDASVGQPM--------- 476
G Y+Y P RN D G G P MG P + +GQ
Sbjct: 816 RDTGSGYKYTPNMRN--PLSQDQGIGQAQPGQAQGMGQSQPGQAQGMGQAQSGQAQGMEQ 873
Query: 477 --------------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
P+TA T LA A PE Q+ +LGE L+PL+E++ + K+TGMLLE
Sbjct: 874 VQPDKAAVHVYGQEPLTA--TMLATAKPEDQKQMLGERLFPLIERMYPELTGKITGMLLE 931
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+D +++LH+LE E+LK +V +A+ +L++
Sbjct: 932 IDNSDLLHMLEHHESLKNQVEKAVAMLQA 960
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/368 (47%), Positives = 241/368 (65%), Gaps = 54/368 (14%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 104 KALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K+ER +
Sbjct: 164 SCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D +DE+ +++F ++G ITSA + RD GKS+ FGFVN+ + A+
Sbjct: 224 MKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAAS 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ALN F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D +
Sbjct: 284 AAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDV 343
Query: 247 DDEKLKELFSEFGTITSCKVMRD--PSGISKGSG-------------------------- 278
DDEKL+++F+ FGTITS KVMRD P+ S+ G
Sbjct: 344 DDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEEAKEESEKTEESNEGADDKKD 403
Query: 279 ------------------------FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314
FV FS P+EA++A+ EMN KMI KPLYVA+AQRK+
Sbjct: 404 ENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKD 463
Query: 315 ERRARLQA 322
R+ +L+A
Sbjct: 464 VRKNQLEA 471
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 153/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + + E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K ER +
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + DE+ +ELF + G ITS + RD G S+
Sbjct: 223 EMKANF-------------TNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSR 269
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 74/289 (25%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIR--------KSGTGNIFIKNLDKSIDHKAL 57
+A A+ +N LN K ++ H P K+ NI++KN+D + +
Sbjct: 188 AANNAIKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEF 245
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F G+I S IA D G+S+GFGFV + E+A A+D LN ++++VG
Sbjct: 246 RELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Query: 118 RKQERET----------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 165
+K ERE + ++K+ N+++KNL++ DE L+ +F +GTITSA VMR
Sbjct: 306 KKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMR 365
Query: 166 D----------GD------------------------------------------GKSKC 173
D GD GKSK
Sbjct: 366 DAMPAERSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKG 425
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 426 FGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 474
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 50/66 (75%)
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+AL+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 658 SALSGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTSDEAALRAKV 717
Query: 543 AEAMEV 548
EAM V
Sbjct: 718 EEAMSV 723
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 202/396 (51%), Positives = 264/396 (66%), Gaps = 38/396 (9%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
A++ LN+TP+ + RIM+S RDP++RK G GNIFIKNL+ ID+KAL+DTFS FGNILS
Sbjct: 97 AIERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILS 156
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 129
KIATD +G SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ KT
Sbjct: 157 SKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEKT 216
Query: 130 K--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
+ F NV+VKN+ TT+E+ K++F + G +S V+ + DGK K FGFVN+EN +DA K
Sbjct: 217 RANFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALK 276
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
AVE LN +F +E YVG+AQKK ER Q LK Q+E E + K+QG+NL+IKNL DSID
Sbjct: 277 AVEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSID 336
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
DEKLKE F+ FGTITS KVMR +G SKG GFV FS+PEEA++A+ E N +++ KPLYV
Sbjct: 337 DEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYV 396
Query: 308 AVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MPM 342
A+AQRKE RR++L Q SQMR P+ G +PPR +P
Sbjct: 397 AIAQRKEVRRSQLAQQIQARSQMRYQQATAAAAAAAAGIPGQFMPPMFYG-VMPPRGVPF 455
Query: 343 YPPGPSGLG----QQF----LYGQAPPAIIPPQAGF 370
P P + QQF +YG P PQ GF
Sbjct: 456 NGPNPQQMNGVPPQQFRNGPMYGMPPQG--APQGGF 489
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 152/294 (51%), Gaps = 19/294 (6%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQN 96
S + ++++ +LD S+ L+D FS G++ S ++ D + S G+ +V F + E+ +
Sbjct: 37 SNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKV 96
Query: 97 AIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE 154
AI++LN I G R +R+ K N+F+KNL+ ++ L F
Sbjct: 97 AIERLNYTPIK------GRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSV 150
Query: 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 214
+G I S+ + D +G SK FGFV+FE A +A++ALNG + +E YV + ER+
Sbjct: 151 FGNILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERD 210
Query: 215 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 274
+L ++T F N+Y+KN+ +E+ KELF + G +S + + G
Sbjct: 211 SQL--------EKTRANF--TNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKL 260
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
KG GFV + E+A +A+ E+N + LYV AQ+K ER L+ Q+ R
Sbjct: 261 KGFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATR 314
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 421 PIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
P+ MPPRG + P + M P F G +P G PR + Q
Sbjct: 442 PMFYGVMPPRGVPFNGPNPQQMNGVPPQQFRNGPMYGMPPQGAPQGGFPRNGNNANQ--- 498
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESP 535
++QR LGE LY + D AA K+TGM+L++ EV+ LLE+
Sbjct: 499 ----------FYQQKQRQALGEQLYKKISAKTSDEEAAGKITGMILDLPPQEVVSLLEND 548
Query: 536 EALKAKVAEA 545
E + EA
Sbjct: 549 ELFEQHFTEA 558
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 188/382 (49%), Positives = 254/382 (66%), Gaps = 41/382 (10%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFV 86
M+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+ILS KIATD +G+SKGFGFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTT 144
FE + +A+ AID LNGML+N ++++V L ++ER++ +TK + N++VKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
DE + +F ++G I SA + +D DGK K FGFVN+EN +DA KAVEALN + + YV
Sbjct: 121 DEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 180
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
G+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSA 240
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 300
Query: 325 ---SQMR---------------------PVAMGPSVPPR-MPMYPPGP-----------S 348
+QMR P+ G +PPR +P P P +
Sbjct: 301 QARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKN 359
Query: 349 GLGQQFLYGQAPPAIIPPQAGF 370
G+ QF G P +PPQ GF
Sbjct: 360 GMPPQFRNG--PVYGVPPQGGF 379
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EV LLE+ E + EA
Sbjct: 392 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLENDELFEQHYKEASAA 451
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 452 YESFKKEQ 459
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/382 (48%), Positives = 255/382 (66%), Gaps = 41/382 (10%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFV 86
M+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+ILS KIATD +G+SKGFGFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTT 144
FE + +A+ AID LNGML+N ++++V L ++ER++ +TK + N++VKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
DE +++F ++G I SA + +D DGK K FGFVN+E +DA KAVEALN + + + YV
Sbjct: 121 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 180
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
G+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 240
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 300
Query: 325 ---SQMR---------------------PVAMGPSVPPR-MPMYPPGP-----------S 348
+QMR P+ G +PPR +P P P +
Sbjct: 301 QARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKN 359
Query: 349 GLGQQFLYGQAPPAIIPPQAGF 370
G+ QF G P +PPQ GF
Sbjct: 360 GMPPQFRNG--PVYGVPPQGGF 379
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 392 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 451
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 452 YESFKKEQ 459
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 171/288 (59%), Positives = 227/288 (78%), Gaps = 4/288 (1%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFV 86
M+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+FGNILSCKI +D G S+G+GFV
Sbjct: 1 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFV 59
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-ETVAIK-TKFNNVFVKNLDESTT 144
FE +E+A+NAI+K+NGML+N K+VFVG F+ ++ER E + K KFNNV++KN E
Sbjct: 60 HFETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEID 119
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
DE LK F +G I SA VM DGK + FGFV++E + A KAV +N K F+++ YV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
G+AQK++ER+ ELK +F++ +E ++++QG+NLY+KNL DSIDDEKL++ FS FGTITS
Sbjct: 180 GRAQKRAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSA 239
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
KVM + G SKG GFV FS+PEEA++A+ EMNG++IV+KPLYVA+AQR
Sbjct: 240 KVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 118/205 (57%), Gaps = 11/205 (5%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K+ NVF+KNLD+S ++ L F +G I S ++ D G S+ +GFV+FE + A
Sbjct: 11 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFETEEAARN 69
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+E +NG + ++ +VG+ + ER ++ M + + KF N+YIKN + ID
Sbjct: 70 AIEKVNGMLLNGKKVFVGRFMNRRERLEQ--------MGDKMKKFN--NVYIKNFSEEID 119
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
DEKLK F FG I S KVM G +G GFV++ PE A +A+ EMN K K LYV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 308 AVAQRKEERRARLQAQFSQMRPVAM 332
AQ++ ER+A L+ +F +++ M
Sbjct: 180 GRAQKRAERQAELKDKFDRLKQERM 204
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 167/318 (52%), Positives = 236/318 (74%), Gaps = 7/318 (2%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 90
RDP++RK+G GNIFIKNLD++ID+KALHDTF++FGN+LSCK+ATD +G+S+G+G+V +E
Sbjct: 231 RDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGYGYVHYET 290
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDL 148
ESA+ AI +N ML+NDKQVFVGH + ++ER++ + +F N++VKNLD T+ +
Sbjct: 291 AESAEAAIKAVNRMLLNDKQVFVGHHISRKERQSQIDEARAQFTNIYVKNLDTDITEAEF 350
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+ +F E+G ITSAV+ D +GKS+ FGFVN+EN ++A +AV ++ K+ + +VG+AQ
Sbjct: 351 RVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQ 410
Query: 209 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
KKSER+ EL E A +E +K+ G+NLY+KNL D +DD+KL+ F FGTITSCKVMR
Sbjct: 411 KKSERQSELARSHEAAKQERQNKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMR 470
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ ISKG GFV FSTP+EA++A+ EMN KMI +KPLYV++AQR++ RR +L+ Q Q
Sbjct: 471 NERDISKGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVSLAQRRDVRRQQLEGQIMQRN 530
Query: 329 PVAMGPSVPPRMPMYPPG 346
+ M + PM PG
Sbjct: 531 QMRM-----QQAPMMGPG 543
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 36/282 (12%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ LD ++ L + F+ G + S ++ D + +S G+ +V + N +
Sbjct: 173 TASLYVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGE--- 229
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
R+ KT N+F+KNLDE+ ++ L F +G +
Sbjct: 230 ----------------------RRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNV 267
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D GKS+ +G+V++E A+ A A++A+N +D++ +VG + ER+
Sbjct: 268 LSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNRMLLNDKQVFVGHHISRKERQS--- 324
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
Q ++A + Q N+Y+KNL I + + + +F EFG ITS + D G S+G G
Sbjct: 325 -QIDEA------RAQFTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFG 377
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320
FV + EEA RA+ EM+ K I K L+V AQ+K ER++ L
Sbjct: 378 FVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSEL 419
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 214/555 (38%), Positives = 313/555 (56%), Gaps = 57/555 (10%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
+ A AL+ LN+ + + RIM+S RDPS+RKSGTGNIF+KNLDK+ID KAL+DTF
Sbjct: 85 YNFQDAEAALECLNYIEIKGQPARIMWSERDPSLRKSGTGNIFVKNLDKAIDTKALYDTF 144
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S FG ILSCK+A D G SKG+GFV + +ESA+ AI+K+NGMLI + QV V FLR+ E
Sbjct: 145 SHFGTILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPFLRRNE 204
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R T + F N++V+N ++ T++DL + F +YG ITS ++ D G+ F FVNF +
Sbjct: 205 R-TSTVGDVFTNLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKGRR--FAFVNFVD 261
Query: 182 ADDAAKAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ A A+E NG KF+ E V + K+ R LK Q++ ++ +KF G+NLYI
Sbjct: 262 TNMAKAAMEGENGVKFESVEEPMMVCQHMDKARRYAMLKAQYDSNAQDQRNKFMGVNLYI 321
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL D DD+ L++LF ++GT+TS KVMRD +G+S+G GFV FS P+EA++A+A M+ K+
Sbjct: 322 KNLDDDFDDDGLRDLFKQYGTVTSSKVMRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKL 381
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
+ +KPLYV +A+++E+R +R+Q + Q + G P +P+YPP
Sbjct: 382 VKNKPLYVGLAEKREQRASRMQQRNRQNDMMQYGDR-PGYVPLYPPE------------- 427
Query: 360 PPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
+ PQ F +Q G RP P G P G R P+
Sbjct: 428 ----MVPQGYFNHQV----GFRPTVPAQP-----------MGVGPRGMRMVAPMPMMHGR 468
Query: 420 LPIMPHQMPPRGHAYRYPLGRN-MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 478
PH R P+ + + F F A + +P G P +P+
Sbjct: 469 GTASPHAA---AQGRRTPVKQVPLSGFKFTAQARNRTELP----NGAPAAAVPTQRPIDG 521
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
A+ + ++GE L+P+V + + A K+TGM+LEMD E++ LLE+ + L
Sbjct: 522 AAM-----------HKQMIGERLFPIVARENPELAGKITGMMLEMDNQELMALLENEQQL 570
Query: 539 KAKVAEAMEVLRSVA 553
K K+ EAM VL+ +
Sbjct: 571 KDKIQEAMRVLKQAS 585
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 225/591 (38%), Positives = 315/591 (53%), Gaps = 103/591 (17%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++Q
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQMKQDRLRRYQ--------- 292
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+ + P G + + S P A+ A+ EMNG+++ +
Sbjct: 293 ----------------LSRGPAQCWAWPVGRREAAQPQEPSFPTPAALAVTEMNGRIVGT 336
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ Q MR ++ +G P P P Q
Sbjct: 337 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY 396
Query: 356 YGQAPPAIIPPQAGFGYQQQ-------------------LVP--GMRPAGAPMPNFFVP- 393
YG P + P Q + Q L P +R A +P VP
Sbjct: 397 YGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVVPRRPLAPISSVRQASTQVPR-TVPH 453
Query: 394 ---VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA-YRYPLGRNMQDFPFDM 449
V + G Q PGG P + P++P++ P H+ YR
Sbjct: 454 TQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSPAAHSTYRVQ------------ 495
Query: 450 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 509
+ IP ++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 496 ----------EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVH 536
Query: 510 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 560
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+ A Q P
Sbjct: 537 TQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ--AHQAVEQP 585
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 169/296 (57%), Gaps = 20/296 (6%)
Query: 38 SGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 92
SG+G ++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
A+ A+D +N ++ + + + +R+ K+ N+F+KNL++S ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+G I S V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
RE EL + A++ T N+Y+KNL +D++ L++LFS+FG + S KVMRD SG
Sbjct: 179 REAELGAR---ALEFT-------NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
S+ GFV F EEA +A+ MNGK + + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQMK 284
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 209/549 (38%), Positives = 306/549 (55%), Gaps = 47/549 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A++ N + LN K IR+M+S R+P R++G GN+F+KNL +SI + L D F FGN
Sbjct: 78 ANLAIEKKNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGN 137
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+AT G+S+G+GFVQFE +++A AI+KLN + K+++VG F++K +R
Sbjct: 138 IVSCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDR--AK 195
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ K+ NV++KNLD ++ L++ F E+G I S + +D +G K + FVNF+ +DA
Sbjct: 196 AEEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDAR 255
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
A E +NG +F + YVG+AQKK+EREQ L+ QF++ +E + K + N+Y+KN+ +
Sbjct: 256 WAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGV 315
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
+E+L++ FS+ GTITS K+M D G SKG GFV FSTPEEA A+ +GKM KPLY
Sbjct: 316 TEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLY 375
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP-MYPPGPSGLGQQFLYGQAPPAIIP 365
VA AQ+KE+R+ +LQ QF S +P Y P Y P ++
Sbjct: 376 VATAQKKEDRKMQLQVQFGNCVEGGGSSSSASFIPGTYAP--------LYYTNTHPGMV- 426
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
Q P + A ++ P + P P I +
Sbjct: 427 -------YQSYPPTWKSANMISSSY-------------PNSQALTYPSVVGNAPRKIKQN 466
Query: 426 QMPPRGHAYRYPLGRNMQDF-PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM--PITALS 482
+ + L RN + P + MLP+ D R G+ M PI
Sbjct: 467 R--------KGKLDRNAVSYVPNVYQSTQMLPLSRDFSNQQLNRTYGRGKEMKKPIQQRQ 518
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ + ++ LLGE LYPLVE+LE A K+TGMLLEMD++E+L LL+SP+ L +V
Sbjct: 519 S----ETIVMEKQLLGELLYPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPQELAVRV 574
Query: 543 AEAMEVLRS 551
EA EVL+S
Sbjct: 575 EEAFEVLKS 583
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 159/288 (55%), Gaps = 19/288 (6%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAI 98
T ++++ +L S+ L+D F+ F ++ S ++ D S G+S +G+ F +++ A AI
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAI 82
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+K N L+N K + V +R E A + NVFVKNL ES T+ L+ +F ++G I
Sbjct: 83 EKKNHSLLNGKMIRVMWSVR----EPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNI 138
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V DGKS+ +GFV FE D A A+E LN +E YVGK KK++R +
Sbjct: 139 VSCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAK--- 195
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+K+ N+Y+KNL ++++ L+E FSEFG I S + +D +G+ KG
Sbjct: 196 ---------AEEKYT--NVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYA 244
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F PE+A A MNG SK LYV AQ+K ER L+ QF +
Sbjct: 245 FVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKE 292
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 188/437 (43%), Positives = 258/437 (59%), Gaps = 77/437 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP +RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 109 RALEELNYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 168
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCK+A D + SKG+GFV +E E+A AI +NGML+N+K+VFVGH + K++R +
Sbjct: 169 SCKVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEE 228
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+D TTD + +++F +YG ITSA + D + GK++ FGFVN+ +DA
Sbjct: 229 MKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDA 288
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
KAVE LN F ++ YVG+AQKK ERE+EL+ Q+E A +E K+ G+NLY+KNL D
Sbjct: 289 YKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADE 348
Query: 246 IDDEKLKELFSEFGTITSCKVMRD--PSG------------------------------- 272
IDD++L+++F +G ITS KVMRD P+
Sbjct: 349 IDDDELRKVFEPYGAITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDD 408
Query: 273 ----------------ISKGSGF--VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314
+ K GF V FS P+EA++A+ E+N KM+ KPLYVA+AQRKE
Sbjct: 409 LSKKLDTVTIQGEKKLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKE 468
Query: 315 ERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQ 374
R+++L+A V M QQ G PP + PQ G
Sbjct: 469 VRKSQLEASIQARNQVRM------------------QQQATAGGIPPQFMQPQMFMGPNG 510
Query: 375 QLVPGMRPAGA---PMP 388
Q P M PAG PMP
Sbjct: 511 Q--PMMMPAGGRGQPMP 525
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 152/291 (52%), Gaps = 22/291 (7%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ LD S+ L + FSS G + S ++ D + +S G+ +V + + A+++L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LI + + +R+ + KT NVF+KNLD + ++ L F +G I S
Sbjct: 115 NYTLIKGRPCRI----MWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC 170
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELK 218
V +D + SK +GFV++E A+ A +A++ +NG ++++ +VG K +R +E+K
Sbjct: 171 KVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMK 230
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGS 277
F N+Y+KN+ D + +ELF ++G ITS + D SG ++G
Sbjct: 231 ANF-------------TNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGF 277
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV + E+A +A+ E+N + LYV AQ+K ER L+ Q+ R
Sbjct: 278 GFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQYEAAR 328
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 209/549 (38%), Positives = 305/549 (55%), Gaps = 53/549 (9%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
A++ N + LN K IR+M+S R P R++G GN+F+KNL +S+ + L D F FGNI+S
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 129
CK+AT G+S+G+GFVQFE +++A AI LN ++ DK+++VG F++K +R V +
Sbjct: 141 CKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR--VKPEE 198
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
K+ N+++KNLD +++ L++ F E+G I S + +D + + + FVNF+N +DA +A
Sbjct: 199 KYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
E +NG KF + YVG+AQKK+EREQ L+ QF++ +E + N+Y+KN+ ++ +E
Sbjct: 259 ETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
+L++ FS+ GTITS K+M D G SKG GFV FSTPEEA A+ +G+M KPLYVA+
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 310 AQRKEERRARLQAQFS---QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
AQ+KE+R+ +LQ QF + R + SV P Y P Y P ++
Sbjct: 379 AQKKEDRKMQLQVQFGNRVEARKSSSSASVNP--GTYAP--------LYYTNTHPGMV-- 426
Query: 367 QAGFGYQQQ--LVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
YQ + G+ PN P M
Sbjct: 427 -----YQSYPLMWKSANMIGSSYPN-------------------------SEAVTYPPMV 456
Query: 425 HQMPPRGHAYRY-PLGRNMQDF-PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
P + R L RN + P + MLP+ D R G+ M +
Sbjct: 457 ANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQ 516
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
E Q LLGE L+PLVE+LE A K+TGMLLEMD++E+L LL+SPE L +V
Sbjct: 517 RQSETVGMEMQ--LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRV 574
Query: 543 AEAMEVLRS 551
EA EVL+S
Sbjct: 575 DEAFEVLKS 583
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 161/288 (55%), Gaps = 19/288 (6%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAI 98
T ++++ +L S+ L+D F+ F ++ S ++ D S G+S +G+ F +++ A AI
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+K N L+N K + V +R + A + NVFVKNL ES T+ L+ +F ++G I
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPD----ARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNI 138
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V DGKS+ +GFV FE D A A++ LN D+E YVGK KK++R +K
Sbjct: 139 VSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR---VK 195
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ +K+ NLY+KNL + ++ L+E F+EFG I S + +D + + +G
Sbjct: 196 PE---------EKYT--NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYA 244
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F PE+A RA +NG SK LYV AQ+K ER L+ QF +
Sbjct: 245 FVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKE 292
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/292 (56%), Positives = 223/292 (76%), Gaps = 4/292 (1%)
Query: 16 FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
F + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+ D
Sbjct: 1 FFVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 60
Query: 76 GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNN 133
+G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ER E A +F N
Sbjct: 61 ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTN 119
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
V++KN E DE LK+IF +YG S VM D GKSK FGFV+FE +DA +AV+ +N
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMN 179
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
GK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D +DDE+L++
Sbjct: 180 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 239
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPL
Sbjct: 240 EFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 128/205 (62%), Gaps = 11/205 (5%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 22 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAER 80
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+E +NG +DR+ +VG+ + + ER E+ + ++ N+YIKN G+ +D
Sbjct: 81 AIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFT----------NVYIKNFGEDMD 130
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
DEKLKE+FS++G S +VM D SG SKG GFV+F E+A RA+ EMNGK + K +YV
Sbjct: 131 DEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 190
Query: 308 AVAQRKEERRARLQAQFSQMRPVAM 332
AQ+K ER+ L+ +F QM+ M
Sbjct: 191 GRAQKKGERQTELKRKFEQMKQDRM 215
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 227/624 (36%), Positives = 331/624 (53%), Gaps = 98/624 (15%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 175 SCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 234
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ T++D +++F +YG +TS+ + RD +GKS+ FGFVNF + A+
Sbjct: 235 MKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAS 294
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE-------QAMKETVDKFQGLNLYI 239
KAV+ LN K F ++ YVG+AQKK ERE+EL+ +E Q M + +
Sbjct: 295 KAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARRGEGQQMNKECGSITSTKVMR 354
Query: 240 KNLGDSIDDEKLK-ELFSEFGTITSCKVMRDPS------------------------GIS 274
+ + ++++K K E E +V +P G S
Sbjct: 355 ETPTEVVEEKKEKAETVKENQEEVKDEVKEEPKEESKDETKEGEEDKKAEKKSDKKLGKS 414
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGP 334
KG GFV FS P++A++A+AEMN +M KPLYVA+AQRK+ R+++L+A + M
Sbjct: 415 KGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQIRMQQ 474
Query: 335 SVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIP--------PQAGFG----------Y 372
+V P+ M PP GQQ P +P PQ G G Y
Sbjct: 475 AVAHAGMPQQYMQPPVYFAPGQQ-------PGFMPQGGRGVPFPQGGMGMPQGRPGQFPY 527
Query: 373 QQQLVPGMRPAGAP-----MPNFFVPVVSQGQQGQ----------RPGGRRGAGPVQQTQ 417
QQ G P P MP F P Q Q GGR +
Sbjct: 528 PQQGGRGGVPQQMPPNMYGMPGQFPPGYGQPGTPQFMAAMQAQQAALGGRGAPQGGRGGP 587
Query: 418 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFD---MGAGSMLPVPVDMGAGIPRRDASVGQ 474
Q +P MP P+ NM FP + G + G DA+
Sbjct: 588 QGMPGMP------------PMAGNMPGFPPNNNRQGGRGGPGRNGNGPQGGRGADAA--- 632
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
+++L LA+A P QQ+ +LGE ++P ++ + D A K+TGMLLEM+ E+++L+E
Sbjct: 633 --GLSSLQQQLASAPPPQQKQILGELIFPKIQAINADLAGKITGMLLEMENPELVNLIED 690
Query: 535 PEALKAKVAEAMEVLRSVAQQQAN 558
ALKAKV EA+ V + Q +
Sbjct: 691 ESALKAKVDEALAVYDEYVKTQTS 714
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 156/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 118 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 233
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + ++ ++LF ++G +TS + RD G S+
Sbjct: 234 EMKANF-------------TNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSR 280
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E AS+A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 281 GFGFVNFTTHESASKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/286 (57%), Positives = 217/286 (75%), Gaps = 2/286 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDKSID+KA++DTFS+FGN
Sbjct: 47 AERALDTMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGN 106
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SKG+GFV FE +E+A NAI K+NGML+N ++VFVG F+ + ERE
Sbjct: 107 ILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQL 166
Query: 127 IKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ +F NV++KN + DE L+++F +YG ITSA VM D GK K FGFV+FE+ ++
Sbjct: 167 GQKARRFMNVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPEN 226
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV LN K+ + + YVG+AQKKSER ELK +FEQ + ++++QG+NLY+KNL D
Sbjct: 227 AEKAVNDLNNKELNGKVLYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDD 286
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 290
SIDDE+L++ F+ FGTITS KVM D +G SKG GFV FS PEEA++
Sbjct: 287 SIDDERLRKEFTPFGTITSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 160/273 (58%), Gaps = 15/273 (5%)
Query: 57 LHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115
L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D +N ++ + + +
Sbjct: 9 LFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRPIRIMW 68
Query: 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 175
+R+ K+ NVF+KNLD+S ++ + F +G I S V D + SK +G
Sbjct: 69 ----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYG 124
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV+FE + A A++ +NG + R+ +VGK +SERE++L + + M
Sbjct: 125 FVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFM---------- 174
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N+YIKN GD +DDEKL+E+F ++G ITS KVM D +G KG GFV+F PE A +A+ ++
Sbjct: 175 NVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDL 234
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
N K + K LYV AQ+K ER A L+ +F Q++
Sbjct: 235 NNKELNGKVLYVGRAQKKSERAAELKRRFEQLK 267
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 152/263 (57%), Positives = 202/263 (76%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTFS FGNIL
Sbjct: 117 RALEDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A AI +NGML+NDK+VFVGH + K++R++
Sbjct: 177 SCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+DES +DE+ K+F YG + SA + RD +GKS+ FGFVNF + + AA
Sbjct: 237 MKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAA 296
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K+F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 297 KAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDV 356
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DD+KL+ELFS +GTITS KVMRD
Sbjct: 357 DDDKLRELFSSYGTITSAKVMRD 379
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 53 PSTAAQHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 112
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN I + + +R+ KT NVF+KNLD + ++ L
Sbjct: 113 ADGERALEDLNYTSIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 168
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F ++G I S V +D G SK +GFV++E A+ A +A++++NG +D++ +VG K
Sbjct: 169 FSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKR 228
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+YIKN+ +S+ DE+ +LF +G + S + R
Sbjct: 229 DRQSKLEEMKANF-------------TNVYIKNIDESVSDEEFTKLFEPYGEVVSATITR 275
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D +G S+G GFV F++ E A++A+ E+N K K LYV AQ+K ER L+ Q+ R
Sbjct: 276 DENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAAR 335
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 153/325 (47%), Gaps = 66/325 (20%)
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 331
G SKG GFV FS P+EAS+A++EMN KM+ KPLYVA+AQRK+ RR +L+A +
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEASIQARNTLR 499
Query: 332 MGPSVPPR-MPMYPPGPSGL--GQQFLYGQAPPAIIPPQAGFGYQQQ---LVPGMR---- 381
MP P+ GQQFL PP Q G + Q ++PGM+
Sbjct: 500 QQQQAAAAGMPQGYIQPTVFYPGQQFL----PPGA---QRGMPFAGQPGMVIPGMQGGRG 552
Query: 382 --PAGAPM------------PNFFVP----------------------VVSQGQQGQRPG 405
P G P PNF +P QGQ G+ G
Sbjct: 553 QFPGGFPQGGRGIPQGQQLPPNFGLPGQMPFIQNPALVNGMYNNPQALAQMQGQMGRGAG 612
Query: 406 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG--RNMQDFPFDMGAGSMLPVPVDMGA 463
GR Q Q +P M +P G MQ+ P GAG + P G
Sbjct: 613 GR----GQMQGMQGMPPNMQGMGGMRGGPNFPQGGRGGMQNIPGGQGAGRI--PPQGRGQ 666
Query: 464 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
IP R+ + P + LA+ QQ+ +LGE++YP ++Q++ + A K+TGMLLEM
Sbjct: 667 MIPNRE-EINTPSSL----HNLASLPQSQQKQILGEAIYPKIQQIQPELAGKITGMLLEM 721
Query: 524 DQTEVLHLLESPEALKAKVAEAMEV 548
D +E+L L++ AL++KV EA+ V
Sbjct: 722 DNSELLSLVDDDAALRSKVDEALRV 746
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 232/675 (34%), Positives = 336/675 (49%), Gaps = 147/675 (21%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LNFT + ++ RIM+ RDP+ R++ GN+F+KNLDKSID+K L DTFS
Sbjct: 63 VADAERALDTLNFTCIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSL 122
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNI+SCKIATD G S G+GF+ FE+ ESA+ AI +LNGM++ D+ ++VG F RK ER
Sbjct: 123 FGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERF 182
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF--------- 174
+ KT F NV+VK++ ++ ++E L +FG YG I+S V+ D G+ F
Sbjct: 183 SEKDKT-FTNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKGRPFGFVNFEDPESA 241
Query: 175 --GFVNFENA---------------------DDAA-----------KAVEALNGKKFDDR 200
N NA DD + VE+ + K+ +D+
Sbjct: 242 KKAVANLHNALVTPLGVELNSNNSERTESGKDDGLSSISSNTESSDETVESNDYKQRNDK 301
Query: 201 E-------------------------WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
E YV +AQK++ER+ LK Q E A +E+ +++QG+
Sbjct: 302 EDPQEADVEKNSDEENSVPFDVQPNRLYVSRAQKRNERQVVLKSQHE-AARESQNRYQGV 360
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
NLY+KNL +S+ + L+ LF +GTI+S + D SGIS+G GFV+F +P+EA++A+ EM
Sbjct: 361 NLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEM 420
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQF--SQMRPVA-----------------MGPSV 336
+ K++ KPLYV + +RKE+R RLQ + + PV M
Sbjct: 421 HLKLVRGKPLYVGLHERKEQRALRLQQRIRGGTVPPVLRPGTIPPGPPTAVHGAPMQFGA 480
Query: 337 PPRMPMYPPGPSGLGQQFLYGQAPPAI--------------------------IPPQA-- 368
PP+M P P+ + P + +PPQ
Sbjct: 481 PPQMYFIPGNPAVAATAGMQHNRTPMVGSFPNQGVMASPWRPNPTRIPYGTGALPPQMTA 540
Query: 369 -GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR-RGAGPVQQTQQ-------- 418
GY PG+ G P N +P G Q P R G Q+
Sbjct: 541 QSVGYN----PGVN--GIPSNNGSIP--QTGPQSVNPAQNIRTGGNSQRIHNRHMQGQGG 592
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDM---GAGSMLPVPVDMGAGIPRRDASVGQ 474
P HQ+ ++++P D P DM G +M P + IP+ D
Sbjct: 593 SRPTHGHQVQIPKQSFKFPSHIKTSDQPRVDMIPGGLVNMDPSGISSVPMIPQSD----- 647
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
+P+TA + LA ASP Q+ LLGE L+P++ Q + + A K+TGM+LEMD E+L +L S
Sbjct: 648 -IPLTA--STLATASPSMQKQLLGERLFPIIAQYQPELAGKITGMMLEMDNNELLEILNS 704
Query: 535 PEALKAKVAEAMEVL 549
+K KV EAM VL
Sbjct: 705 DAEIKNKVDEAMIVL 719
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 140/278 (50%), Gaps = 22/278 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +LD + L++ F+S + S +I D + +S G+ +V + + A+ A+
Sbjct: 11 SASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + + LR + + + NVFVKNLD+S ++ L F +G I
Sbjct: 71 DTLNFTCIRSRPCRIMWCLR----DPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D +G S +GF++FE+ + A +A+ LNG DR YVGK Q+K+ER E
Sbjct: 127 MSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKD 186
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
F N+Y+K++ + +E L LF +G I+S + D G + G
Sbjct: 187 KTF-------------TNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKG--RPFG 231
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
FV F PE A +A+A ++ ++ PL V + ER
Sbjct: 232 FVNFEDPESAKKAVANLHNALVT--PLGVELNSNNSER 267
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 17/196 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +LD T+ L +IF ++S + RD +S + +VN+ + DA +A++
Sbjct: 13 SLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDT 72
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + + + +G N+++KNL SID++ L
Sbjct: 73 LNFTCIRSRPCRIMWCLRDPASRRNNEG----------------NVFVKNLDKSIDNKTL 116
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCK+ D G S G GF+ F PE A A+A +NG ++ +P+YV Q
Sbjct: 117 FDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQ 176
Query: 312 RKEERRARLQAQFSQM 327
RK ER + F+ +
Sbjct: 177 RKAERFSEKDKTFTNV 192
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 215/509 (42%), Positives = 280/509 (55%), Gaps = 105/509 (20%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKNL+ T+E+ +++F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG-- 243
A AVE LN K++ ++ YVG+AQKK ERE+EL+ Q E A E K+QG+NLY+KNL
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 244 -----------------------DSIDD---------------------EKLKELFSEFG 259
D+I D E KE E
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTISDAGSESEKEKEASKDNKENVKEETKKEAGGEDS 409
Query: 260 TITSCKV----MRDPS----GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ K + P+ G SKG GFV FS P+EAS+A+ EMN +M+ KPLYVA+AQ
Sbjct: 410 AEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 312 RKEERRARLQAQF-------SQMRPVAMGPSVPPRMP--MYPPGPSGLGQQFLYGQAPPA 362
RK+ R+++L+A Q A G S P P YPPG G
Sbjct: 470 RKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGF------------ 517
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP------GGRRGAGPVQQT 416
IP A G GM A A P +P + G+ GQ P GGR AGP QQ
Sbjct: 518 -IPANAQRG-------GM--AFAQQPGMVLPGMPGGRPGQYPGGFPQQGGRGLAGPNQQL 567
Query: 417 --------QQPLPIMPHQMP---PRGHAY 434
Q LPI Q P P G Y
Sbjct: 568 PPNAFGLGAQGLPIGALQGPGGIPNGLTY 596
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 158/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KNL + +E+ +ELF ++G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV F + A+ A+ ++N K + LYV AQ+K ER L+ Q
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAA 328
Query: 328 R 328
R
Sbjct: 329 R 329
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 115 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 158
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 159 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 218
Query: 312 RKEERRAR---LQAQFSQMRPVAMGPSV 336
K++R+++ ++A F+ + + P V
Sbjct: 219 AKKDRQSKFEEMKANFTNVYVKNLEPEV 246
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 188/394 (47%), Positives = 267/394 (67%), Gaps = 28/394 (7%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD +NFT + K RIM+S RDPS+R+SG GNIF+KNL + ID+K L+DTFS
Sbjct: 60 VADAERALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSL 119
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
FGNILSCK+ TD +G SKG+G+V +E E+A +AI+KL+GMLI+ K+V VG F+R+ R
Sbjct: 120 FGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNR 179
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A + NVF+KN+ T++ L++ F +G + SA ++ G S FGFVNF
Sbjct: 180 PGQA---DWTNVFIKNIPFEWTEDKLREEFEGFGEVVSAKP-KEVQG-SLGFGFVNFATH 234
Query: 183 DDAAKAVEALNGKKFDDRE--------WYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 234
+ AA AV+ +N K+F E +VG+AQKK+ERE+EL+ ++E + + KFQG
Sbjct: 235 EAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQG 294
Query: 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALA 293
+NLY+KNL D++ D+ L++ FS GTITS +VM+D +GIS+G GFV +STPE+A+RA+
Sbjct: 295 VNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVN 354
Query: 294 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR---PVAMGPSVPPRMP---MYPPGP 347
EMNGK+I+ KP++VA+AQR++ RRA+L+AQ +Q R P MG + P +P MY PGP
Sbjct: 355 EMNGKIILGKPIFVALAQRRDVRRAQLEAQHNQGRGNLPGPMGGAYPGAVPMPGMYRPGP 414
Query: 348 SGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR 381
G Q Y P ++ + G+G Q Q PG R
Sbjct: 415 ---GMQPAY--PVPQMMQGRGGYGMQAQ--PGGR 441
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LYI +L +++ L E+F+ G + S +V RD + S G +V + +A R
Sbjct: 6 FSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAER 65
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL MN I KP + +QR R
Sbjct: 66 ALDSMNFTEIKGKPCRIMWSQRDPSMR 92
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 223/569 (39%), Positives = 315/569 (55%), Gaps = 55/569 (9%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+D +NF L+ + S + + R S T K FS+FGN
Sbjct: 65 AERAIDTMNFIQLSVNLASAISSSKTWT-RLSTT--------------KCCTIPFSAFGN 109
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ET 124
ILSCK+ + +G+SKG+GFV FE +E+A AI+KL+GML+NDK+VFVG F + ER E
Sbjct: 110 ILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREY 169
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+F NVF+KNL D L ++FGE+G++ S + D +GKS+ FGFV+FE +
Sbjct: 170 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHEC 229
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A K VE L+ K+F+ ++ +VG+AQKK+ER+ ELK +FE+ E ++QG+NLY+KNL D
Sbjct: 230 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDD 289
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPS---GISKGSGFVAFSTPEEASRALAEMNGKMIV 301
SI D+ L+E F+ +G ITS KVM D SKG GFV F++ EEA++A+ EMNG++I
Sbjct: 290 SITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 349
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQ-----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLY 356
SKPLYVA+AQRK+ER+A LQ Q+ Q MR A + P +Y P P + Q
Sbjct: 350 SKPLYVALAQRKDERKAHLQQQYMQRVTTGMRLQAFPTNQPQYGNLYMPPP--IQQHPFR 407
Query: 357 GQAPPAIIPPQAGFGYQQQLV----PGMRPAGAPMPNFFV---PVVSQGQQGQRPGGRRG 409
P Q + Q + P +R FF+ S+ + GG R
Sbjct: 408 MSIRPTPRWSQVKYDQLQSQINSEHPALRLRRESSRTFFIFSFVTSSECRMIFNSGGPRA 467
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 469
V+ I P P + R Q + G + LP P + A IP
Sbjct: 468 QNGVRG------IAPITRFPANNYTARAGSRPNQSIIYKPGVRNPLPTPAE--AQIPAEQ 519
Query: 470 ASVGQP------MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
A+ QP P+ A T LA A P++Q+ LLGE LYP + QL + K+TGMLLE+
Sbjct: 520 AA--QPKAPDTEQPLNA--TILAAAPPQEQKQLLGERLYPSIRQLYPELCGKITGMLLEI 575
Query: 524 DQTEVLHLLES---PEALKAKVAEAMEVL 549
+ +E+L +L++ P L+ KV EA+ VL
Sbjct: 576 ENSELLAMLDTKSNPGLLQEKVQEAVTVL 604
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 136/240 (56%), Gaps = 23/240 (9%)
Query: 6 SAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHD 59
+A +A++ L+ +N+K + + + R +R+ G N+FIKNL D L +
Sbjct: 136 AAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTE 195
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F G+++S +ATD +G+S+ FGFV FE E A+ ++KL+ K++FVG +K
Sbjct: 196 VFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKK 255
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+ +K KF N++VKNLD+S TD+ L++ F YG ITS+ VM D
Sbjct: 256 AERQ-AELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTD 314
Query: 167 GD---GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
D +SK FGFV F +A++A KAV +NG+ + YV AQ+K ER+ L+ Q+ Q
Sbjct: 315 TDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDERKAHLQQQYMQ 374
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 147/289 (50%), Gaps = 30/289 (10%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L L+D FS G +LS ++ D + +S G+ +V F+ E A+ AID
Sbjct: 11 ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N F++ AI + K +T + F +G I
Sbjct: 71 TMN-------------FIQLSVNLASAISSS------KTWTRLSTTKCCTIPFSAFGNIL 111
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V + G+SK +GFV+FE + A KA+E L+G +D++ +VG+ + + ER +E
Sbjct: 112 SCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGD 171
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ +Q N++IKNL DD KL E+F E G++ S + D +G S+ GF
Sbjct: 172 RAKQFT----------NVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGF 221
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F T E A + + +++ K K ++V AQ+K ER+A L+ +F +++
Sbjct: 222 VSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLK 270
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 204/506 (40%), Positives = 289/506 (57%), Gaps = 58/506 (11%)
Query: 70 CKIA--TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV-- 125
C++A D +G S+GFGFV FE +E+A AI +NGML+ND++VFVGHF +QERE
Sbjct: 111 CRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELG 169
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
A +F N++VKN +E D+ L+++F E+G S VM D +G S+ FGFVNFE ++A
Sbjct: 170 ARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEA 229
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
KAV ++NGK R YVG+AQK++ER+ ELK +FEQ +E V+++QG+NLY+KNL D
Sbjct: 230 QKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDV 289
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
IDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPL
Sbjct: 290 IDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 348
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAM---GPSVP-PRMPMYPPGPSGLGQQFLYGQAPP 361
YVA+AQRKEER+A L Q+ Q V GP P P P P + Y +
Sbjct: 349 YVALAQRKEERKAILTNQYMQRISVLRNINGPVFPQPTNYFLPAIPQSPTRASFYSPSTM 408
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
A I P + P F+P RR + +Q
Sbjct: 409 APIRPAPRWT-------SYSPRSLCAFVVFLPATP----------RRSTSNISTVRQAST 451
Query: 422 IMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM-LPVPVDMGAGIPRRDASVGQP----- 475
+P P +MQ ++G +M P G IP+ S P
Sbjct: 452 QVPRAGP------------HMQRV-VNIGTQTMGTGCPGSPGQAIPQYKYSSAMPNAHQV 498
Query: 476 ----------MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
P+TA + LA+A P++Q+ +LG+ LYPL+ + A K+TGMLLE+D
Sbjct: 499 MERAVHIQGQEPLTA--SMLASAPPQEQKQMLGDRLYPLIYGVHAQLAGKITGMLLEIDN 556
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRS 551
+E+L +LESPE+L +K+ EA+ L++
Sbjct: 557 SELLLMLESPESLHSKIEEAVAALQA 582
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 21/237 (8%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY----SHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A +A+ +N LN++ + + + R+ + R NI++KN ++ +D + L +
Sbjct: 135 AANQAISTMNGMLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEEDVDDQCLEE 194
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
FS FG LS K+ D +G S+GFGFV FE E AQ A++ +NG + + ++VG ++
Sbjct: 195 LFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKAVNSMNGKALGGRVLYVGRAQKR 254
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+ +K +F N++VKNLD+ DE L+K F YG ITSA VM +
Sbjct: 255 TERQG-ELKRRFEQMKQERVNRYQGVNLYVKNLDDVIDDEKLRKEFSPYGVITSAKVMTE 313
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
G G SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q
Sbjct: 314 G-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ 369
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 163/281 (58%), Positives = 210/281 (74%), Gaps = 5/281 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG+YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + YVG+A KK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 300
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS
Sbjct: 301 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFS 340
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 173/298 (58%), Gaps = 17/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ +MNGK + K +YV A +K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMK 283
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 500 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPE 557
Query: 537 ALKAKVAEAMEVLRSVAQQQA 557
+L++KV EA+ + A++ A
Sbjct: 558 SLRSKVDEAVVLQAHQAKEAA 578
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 201/551 (36%), Positives = 297/551 (53%), Gaps = 48/551 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL+ +NF ++ + IRIM+S R PS + GN+F+KNL+ S++ KAL++ FS FGN
Sbjct: 70 AKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGN 129
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D +SKG+GFVQFE +E+A+ AID NG++ K+++VG F + ER A
Sbjct: 130 IVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQA 189
Query: 127 IKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+T F NVFVKN + E L+++F ++G I S V DGDGK FGFV FEN DD
Sbjct: 190 KRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDD 249
Query: 185 AAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
A KAV+ + DR+ YV + QKK ER EL +++ E +++G NLY+KNL
Sbjct: 250 AEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNL 309
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDD+ L+ F E+G + S KVMR G SKG GFV F P+EA +A+ M GKM+ +
Sbjct: 310 DDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCT 369
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYV++AQRKE+R+A + +Q+ Q R+ + G Y
Sbjct: 370 KPLYVSMAQRKEDRKAFIASQYMQ------------RIASIRMQATSFGSGMTYMSDSTV 417
Query: 363 IIPPQAGFG---YQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP 419
+ P A +G Q+ + + A A M + G + R G + QQ
Sbjct: 418 VQPLFACYGRGTLQRNMSNDV--AVATMVPGQHSWLQMGDIDKSQTQRMAVGAMVYGQQN 475
Query: 420 L----PIMPHQMPPRGHAYR-YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ 474
+ IM RG P + +F G M P VGQ
Sbjct: 476 VRSQYAIMQSDGDCRGQTENPAPYSQTFSEF-----RGYMAP--------------RVGQ 516
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERD-AAAKVTGMLLEMDQTEVLHLLE 533
P+T L+ + ++Q+ ++ E + PLV ++ + A K+ GMLLEMD E+L +L
Sbjct: 517 VEPLTP--HILSQLTVQKQKQVIAERICPLVPRIYKGPDANKIMGMLLEMDNAELLMMLN 574
Query: 534 SPEALKAKVAE 544
+ L++++ E
Sbjct: 575 NEGLLRSRINE 585
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 157/286 (54%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L + FS+ G +LS ++ D + +S G+ +V FE E A+ A++
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +++ + + + R+ VA NVFVKNL+ S + L F +G I S
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAA----GNVFVKNLNGSVNSKALYNKFSVFGNIVS 132
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D KSK +GFV FE + A KA++ NG F+ + YVG+ Q +SER
Sbjct: 133 CKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERS------ 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
EQA K T + F N+++KN D +D EKL++LF++FG I SC V D G G GFV
Sbjct: 187 -EQA-KRTTNCFT--NVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFV 242
Query: 281 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQF 324
AF P++A +A+ +M + + LYV+ Q+K ER A L ++
Sbjct: 243 AFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKY 288
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 183
VA K +++V +L + L + F G + S V RD +S + +VNFE +
Sbjct: 9 VASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPE 68
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DA +A+E +N R + +Q++ + G N+++KNL
Sbjct: 69 DAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAG----------------NVFVKNLN 112
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
S++ + L FS FG I SCK+ D SKG GFV F T E A +A+ NG + K
Sbjct: 113 GSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGK 172
Query: 304 PLYVAVAQRKEER 316
+YV Q + ER
Sbjct: 173 RIYVGRFQSRSER 185
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFV 280
E A K+ + +LY+ +L +++ L E FS G + S +V RD + S G +V
Sbjct: 3 EMADKDVASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYV 62
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
F PE+A +AL MN ++ +P+ + +QR+
Sbjct: 63 NFERPEDAKQALETMNFDIVHGRPIRIMWSQRR 95
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 205/263 (77%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 179
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VG+ + K++R++
Sbjct: 180 SCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEE 239
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K + NV+VKN++ T+E+ +++F +YG +TS+ + RD +GKS+ FGFVNF D AA
Sbjct: 240 MKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAA 299
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LNGK+F +E YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL D I
Sbjct: 300 KAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDI 359
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DD+KL+++FSEFG ITS KVMRD
Sbjct: 360 DDDKLRQMFSEFGPITSAKVMRD 382
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 163/290 (56%), Gaps = 15/290 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + + A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 178
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V +D +G SK +GFV++E + AA+A++ +NG ++++ YVG K +R+
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQS--- 235
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+FE+ MK N+Y+KN+ + +E+ +ELFS++G +TS + RD G S+G G
Sbjct: 236 -KFEE-MKANY-----TNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFG 288
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV FST + A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAAR 338
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 133/288 (46%), Gaps = 71/288 (24%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYS--HRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+AA+A+ +N LN K + + Y +D + K+ N+++KN++ + + +
Sbjct: 204 AAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRE 263
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
FS +G + S +A D G+S+GFGFV F +SA A+++LNG ++++VG +K
Sbjct: 264 LFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKK 323
Query: 120 QERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
ERE A K + N+++KNL + D+ L+++F E+G ITSA VMRD
Sbjct: 324 HEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKLRQMFSEFGPITSAKVMRDN 383
Query: 168 ----------DGK-------------------------------------------SKCF 174
+GK SK F
Sbjct: 384 PPDHHHSADKEGKDKENKKEGEQEAKKEGKEEGEKDGEAKEGEKKTEKKPERKLGKSKGF 443
Query: 175 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
GFV F N DDA KAV +N + + + YV AQ+K R+ +L+ +
Sbjct: 444 GFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEASIQ 491
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 218/600 (36%), Positives = 315/600 (52%), Gaps = 75/600 (12%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL+ LN+ + RIM+S+RDPS+R+SG GNIF+KNLDKSID K+L+DTFS FG
Sbjct: 81 AEAALESLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGP 140
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D SG SK +GFV +EN+ESA+ AI+K+NGMLI K+V V FLRKQ+RE
Sbjct: 141 ILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDREGEE 200
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ F N++V+N +E L++ +YG ITS ++ D G+ F FVN++ + A
Sbjct: 201 V---FTNLYVRNFPADWNEEALRQFLEKYGEITSMMLKEDSKGRR--FAFVNYKEPEVAK 255
Query: 187 KAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
+ V LN K D+ V Q K++R+ L+ QF + DK NLYIKNL D
Sbjct: 256 EVVNTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQFNNSSMGQEDKRVTSNLYIKNLDD 315
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S DDE L ELF FGTITS KVM D + S+G GFV F+ P+EA++A+A M+ K++ KP
Sbjct: 316 SFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKP 375
Query: 305 LYVAVAQRKE------------ERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQ 352
LYV +A++++ E +R FS++ ++ P P +P +G +
Sbjct: 376 LYVGLAEKRDQRMMRMQQRRSFEPHSR-DVLFSELPSQSLYYPRPFPAPSFPNSVAGPNK 434
Query: 353 QFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGP 412
+F PP P N+ PV + + G R P
Sbjct: 435 KF-----PPNFTTNNPQANNYPPNYNANFPPVNSYANY--PVRNVAAKAPSAGNARNMSP 487
Query: 413 VQQTQQP--LPIMPHQMPP-------------RGHAYRYPLGRNM-QDFPFDMGAGSMLP 456
+ P +P P +PP G+ + + NM P +MG
Sbjct: 488 MSSANIPSNIPHYPSVVPPSMAHVVASGNMGVHGNLTHHVVPPNMPHVLPGNMG------ 541
Query: 457 VPVDM--GAGIPRRD-----ASVGQPMPITALSTA--------------LANASPE---- 491
VP +M GA RRD + Q P++A + N + +
Sbjct: 542 VPTNMVPGAVGIRRDNNNPKSHQHQMPPVSAFKFTPQARNREMPMHPQYVVNGNVQVDDV 601
Query: 492 -QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
Q+ ++GE L+P++ + D A K+TGM+LE+D E+L LLE + LKAK+ EA++VL+
Sbjct: 602 AMQKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHELLQLLEDNDQLKAKIDEAIKVLK 661
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L T+ L ++F G + S V RD KS + +VN+ + DA A+E+L
Sbjct: 29 LYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALESL 88
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 248
N Y+ E+KG + M D + N+++KNL SID
Sbjct: 89 N---------YI-----------EIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDT 128
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV D SG SK GFV + E A A+ ++NG +I K + VA
Sbjct: 129 KSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVA 188
Query: 309 VAQRKEER 316
RK++R
Sbjct: 189 PFLRKQDR 196
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 164/321 (51%), Positives = 228/321 (71%), Gaps = 6/321 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + K IR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS+
Sbjct: 160 LADAQKALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSA 219
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+ FV F+N+ +A AI+++NG L+ D ++FVG F +++RE
Sbjct: 220 FGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDRE 278
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F NV+VKN + DE LK++F +YG S VM D GKSK FGFV+F+
Sbjct: 279 A-ELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFD 337
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NGK + + +VG+AQKKSER+ ELK FEQ +E + QG+ LYIK
Sbjct: 338 SHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIK 397
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL FS FG+I+ K+MR+ G SKG G + FS+PEEA++A+AEMNG+++
Sbjct: 398 NLDDTIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRIL 456
Query: 301 VSKPLYVAVAQRKEERRARLQ 321
SKPLY+A+AQR ER+ L
Sbjct: 457 GSKPLYIALAQRPXERKNFLH 477
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 169/289 (58%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + L +R+ K+ NVF+KNLD+S ++ L + F +G I
Sbjct: 169 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 224
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G S+ + FV+F+N + A +A+E +NG D +VG+ + + +RE EL+
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 283
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ V++F N+Y+KN GD +DDE+LKE+FS++G S KVM D G SKG GF
Sbjct: 284 K--------VNEFT--NVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGF 333
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F + E A +A+ EMNGK + + L+V AQ+K ER+A L+ F Q++
Sbjct: 334 VSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLK 382
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 26/212 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
V K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 101 NVEAKYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKL 160
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 238
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 161 ADAQKALDTMN---FD-----------------MIKGKPIRLMWSQRDAYLRKSGIGNVF 200
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L E FS FG I S KVM D G S+G FV F A RA+ EMNG
Sbjct: 201 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGA 259
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
++ L+V + +++R A LQ + ++ V
Sbjct: 260 LLKDCRLFVGRFKNRKDREAELQNKVNEFTNV 291
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 206/535 (38%), Positives = 292/535 (54%), Gaps = 68/535 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RK
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKX-------------------------- 96
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 97 -------XXXXXXXXSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 149
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 209
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 210 EDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 362
KPLYVA+AQRKEER+A L Q+ M+ +A +VP P+ P Y APP+
Sbjct: 329 KPLYVALAQRKEERQAHLTNQY--MQRMASVRAVP--NPVINP----------YQPAPPS 374
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFV----PVVSQGQQGQRPGGRRGAGPVQQTQQ 418
GY +P + A P + P QG RP + +
Sbjct: 375 --------GYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAA 426
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLP---VPVDMGAGIPRRDASVGQ 474
P P P R ++ P + AG P + + + V
Sbjct: 427 PRPPFSTMRPASSQVPRXXXXXAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG 486
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 529
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L
Sbjct: 487 QEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELL 539
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 201/378 (53%), Gaps = 64/378 (16%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQV---------------------------FVGHFLRKQERE 123
A+ A+D +N +I K V FV HF QE
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKXXXXXXXXXSKGYGFV-HF-ETQEAA 119
Query: 124 TVAIKTKFN-------NVFV-------------------------KNLDESTTDEDLKKI 151
AI+ K N VFV KN E DE LK +
Sbjct: 120 ERAIE-KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 178
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
FG++G S VM D GKSK FGFV+FE +DA +NGK+ + ++ YVG+AQKK
Sbjct: 179 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYVGRAQKKV 238
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 271
ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM +
Sbjct: 239 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-G 297
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 331
G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 298 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASV 357
Query: 332 MGPSVPPRMPMYPPGPSG 349
P P P PSG
Sbjct: 358 RAVPNPVINPYQPAPPSG 375
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/347 (47%), Positives = 238/347 (68%), Gaps = 5/347 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL+ +NF L+ K +RIM+ HRDPS+R+SG GN+F+ +LD SID+K L+D F+ FG
Sbjct: 73 AGHALNTMNFDVLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGT 132
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERET 124
ILSCK+ +D +G KG GFV FE +E+A AI ++NG L+ +++VFVG F R ++E E
Sbjct: 133 ILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEER 191
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV+VKN + TTDE L +IF +YG ++S +M D GKSK FGF+ FE D
Sbjct: 192 RAKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHAD 251
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A +A+E +NGK+F R+ YV +AQKK ERE+EL+ + E+ + + K+ G++L++KNL +
Sbjct: 252 AKRAIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAE 311
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S DDE L+++F+ FGT+TS KV+ G KG GFV+FS+ EEA +A+ EM+GKM+ ++P
Sbjct: 312 STDDEHLRKIFAPFGTVTSAKVIVK-GGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARP 370
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPV-AMGPSVPPRMPMYPPGPSGL 350
LYV+ A+ K+ERRA + + + + A PS P P P P G
Sbjct: 371 LYVSYARYKQERRAYFASYYGKKKASPAKSPSTPDTSPSQPASPDGF 417
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 162/278 (58%), Gaps = 16/278 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +L + L++ FS+ G ILS ++ D S +S G+G+V F E A +A+
Sbjct: 18 SASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHAL 77
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ +N +++ K V + R+ ++ NVFV +LD S +++L +F +GTI
Sbjct: 78 NTMNFDVLHGKPVRIMWC----HRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTI 133
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V+ D +G K GFV+FE + A KA++ +NG +R+ +VG+ ++ ++RE+E +
Sbjct: 134 LSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERR 192
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ EQ N+Y+KN D DE L E+FS++G ++S K+M D SG SKG G
Sbjct: 193 AKMEQFT----------NVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFG 242
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
F+ F +A RA+ E+NGK + +YV+ AQ+K+ER
Sbjct: 243 FIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKER 280
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ L +ASPE Q+ +LGE L+PL++ L+ A+K+ GMLLEMD +E+L LLESPE+ +
Sbjct: 561 ITSTLVSASPEDQKKILGEWLFPLIQALQPTLASKIMGMLLEMDNSELLLLLESPESFCS 620
Query: 541 KVAEAMEVLRSVAQQQA 557
KV EA+ VL + QQA
Sbjct: 621 KVDEAVAVLEACQAQQA 637
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ +L + + L E FS G I S +V RD S S G G+V F PE+A
Sbjct: 16 FPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGH 75
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL MN ++ KP+ + R
Sbjct: 76 ALNTMNFDVLHGKPVRIMWCHR 97
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 149/263 (56%), Positives = 199/263 (75%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 169
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 229
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KNLD D++ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 230 MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQ 289
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D I
Sbjct: 290 AAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDI 349
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+ELF +GTITS KVMRD
Sbjct: 350 DDEKLRELFGPYGTITSAKVMRD 372
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 163/300 (54%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+YIKNL IDD++ +++F +FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G S+G GFV FST E A A+ EMN K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 144/321 (44%), Gaps = 75/321 (23%)
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 425 KSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 325 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPG 379
+ + P+ M P G GQQ F+ G PPQ G +PG
Sbjct: 485 QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPG 541
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGH 432
RP P P P GQQG RG GP QQ Q +P M Q P P G
Sbjct: 542 GRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFAQGIP-MGMQGPGGIPNGM 588
Query: 433 AYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGI-------------------------- 465
Y M F GAG VP + MG G+
Sbjct: 589 GY-----PQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGR 643
Query: 466 ---------PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
P+ A+ G + L A P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 644 GQNAAAPAGPQEGAAGG------VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKI 697
Query: 517 TGMLLEMDQTEVLHLLESPEA 537
TGMLLEMD TE+L L P A
Sbjct: 698 TGMLLEMDNTELLSLTRKPCA 718
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 34/181 (18%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNL ID + L + F +G I S K+ D E +S +A +
Sbjct: 339 NLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD----------TNVERDQSPDSAGKEK 388
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
NDK+ ++ E + ++ + K D KK FG
Sbjct: 389 EADKENDKEATPEAEKAEKAEEKPSESSEEKDKEAKKSD--------KKPFG-------- 432
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
KSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+
Sbjct: 433 --------KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 222 E 222
+
Sbjct: 485 Q 485
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 149/263 (56%), Positives = 199/263 (75%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 108 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 167
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 168 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 227
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KNLD D++ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 228 MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQ 287
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D I
Sbjct: 288 AAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDI 347
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+ELF +GTITS KVMRD
Sbjct: 348 DDEKLRELFGPYGTITSAKVMRD 370
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 202/604 (33%), Positives = 283/604 (46%), Gaps = 126/604 (20%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN+K + + + S +D + K+ N++IKNLD ID
Sbjct: 192 AANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRK 251
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG I S ++ D G+S+GFGFV F ESAQ A++++N I ++++VG +K
Sbjct: 252 MFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKK 311
Query: 120 QERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
ERE A K + N++VKNL + DE L+++FG YGTITSA VMRD
Sbjct: 312 HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDT 371
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 227
+ V E++ ++A GK +K++ +E + KE
Sbjct: 372 N--------VERESSPESA------------------GK-EKEANKEND---------KE 395
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287
+ + + +EK KE + K + P G SKG GFV FS+P+E
Sbjct: 396 ATPEAEKAEEKAEEKPAESSEEKDKE---------AKKSDKKPFGKSKGFGFVCFSSPDE 446
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMY 343
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + + P+ M
Sbjct: 447 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQ 506
Query: 344 PPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
P G GQQ F+ G PPQ G +PG RP P P P GQQG
Sbjct: 507 PAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPGGRPGQYPGP---FP----GQQGG 556
Query: 403 RPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSML 455
R G GP QQ Q +P M Q P P G Y M F GAG
Sbjct: 557 R-----GMGPNQQIPPNFAQGIP-MGMQGPGAIPNGMGYP-----QMAQVQFGRGAGGRG 605
Query: 456 PVP-VDMGAG------------IPRRDASV-------GQPMPITA----------LSTAL 485
VP + MG G +P + + GQ A + L
Sbjct: 606 QVPGMPMGQGMRGGPGYGQGRGVPVQQGQIRPGQGGRGQNAAAPAGPQEGAAGGVNAQTL 665
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
A P QQ+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA
Sbjct: 666 GAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDEEALRAKVDEA 725
Query: 546 MEVL 549
+ V
Sbjct: 726 LSVY 729
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N + A+
Sbjct: 51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 110
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 111 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 166
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K +R+ +
Sbjct: 167 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 226
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKNL IDD++ +++F +FG ITS + RD G S+
Sbjct: 227 EMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSR 273
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV FST E A A+ EMN K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 274 GFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 326
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 224/323 (69%), Gaps = 31/323 (9%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF P+ + IRIM+S RDPS+R+SG GN+FIKNLDK IDHKA++DTFS+FGN
Sbjct: 66 AERALDTMNFDPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNFGN 125
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ET 124
ILSCK+ATD +G SKG+G+V G F+ + +R E
Sbjct: 126 ILSCKVATDENGVSKGYGYV---------------------------GKFIPRAQRMREI 158
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
KF NV+VKN DE+ TD+ L +F ++G I S VVM++ D KSK FGFV+FEN +D
Sbjct: 159 GETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKEDD-KSKGFGFVSFENPED 217
Query: 185 AAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
A AV+ +N + ++ YVG+AQKK+ER+ ELK ++E E + +++G+NLY+KNL
Sbjct: 218 AEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLD 277
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DS+DD +L++ F +FG ITS KVM D G SKG GFV FS+P+EA+RA++EMN + + +K
Sbjct: 278 DSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNK 337
Query: 304 PLYVAVAQRKEERRARLQAQFSQ 326
PLYVA+AQRKE+R+A+L +Q Q
Sbjct: 338 PLYVALAQRKEDRKAQLASQLVQ 360
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 51/65 (78%), Gaps = 2/65 (3%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P+T S+ L++A P++Q+ +LGE L+PL+ ++ +D A K+TGMLLEMD E+L++LESP+
Sbjct: 558 PLT--SSMLSSAPPQEQKQMLGERLFPLIMEIHKDLAGKITGMLLEMDNGELLNMLESPD 615
Query: 537 ALKAK 541
L AK
Sbjct: 616 LLNAK 620
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ +L + + L E FS G + S +V RD + S G +V + +A R
Sbjct: 9 FAMASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAER 68
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
AL MN + +P+ + +QR
Sbjct: 69 ALDTMNFDPVFGRPIRIMWSQR 90
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 201/263 (76%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 105 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 164
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 165 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 224
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+D+ T+E+ +++F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 225 MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQ 284
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 285 AAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 344
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+ELF +GTITS KVMRD
Sbjct: 345 DDEKLRELFGPYGTITSAKVMRD 367
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 208/636 (32%), Positives = 292/636 (45%), Gaps = 130/636 (20%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN+K + + + S +D + K+ N++IKN+D+ + + +
Sbjct: 189 AANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRE 248
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG I S ++ D G+S+GFGFV F ESAQ A+D++N I ++++VG +K
Sbjct: 249 LFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKK 308
Query: 120 QERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
ERE A K + N++VKNL + DE L+++FG YGTITSA VMRD
Sbjct: 309 HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD- 367
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 227
N E D+E +A K++E+E + E+ ++
Sbjct: 368 ---------TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEK 407
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287
D G D + L G SKG GFV FS+P+E
Sbjct: 408 PADS--GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDE 445
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMY 343
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + + P+ M
Sbjct: 446 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQ 505
Query: 344 PPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
P G GQQ F+ GQ PPQ G +PG RP P P P GQQG
Sbjct: 506 PAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQYPGP---FP----GQQGG 556
Query: 403 RPGGRRGAGPVQQTQ---QPLPIMPHQMP-PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 458
R G GP QQ Q +P+ Q P P G Y P G M F GAG VP
Sbjct: 557 R-----GMGPNQQLPPNFQGIPMGAMQGPVPNGMGY--PQG--MAQVQFGRGAGGRGQVP 607
Query: 459 --VDMGAG------------IPRRD----------------ASVGQPMPITA---LSTAL 485
+MG G +P + A G+P A + AL
Sbjct: 608 GMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQAL 667
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
+ A P QQ+ +LGE+LYP ++ + + A K+TGMLLEM+ TE+L LLE EAL+AKV EA
Sbjct: 668 SAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEA 727
Query: 546 MEVL---------RSVAQQQANNPADQLASLSLNEN 572
+ V S A +A P + S EN
Sbjct: 728 LNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 21/309 (6%)
Query: 24 IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKG 82
+ + S P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 83 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES 142
+ +V + N + A++ LN LI K + +R+ KT NVF+KNLD +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 143 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 202
++ L F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 203 YVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 259
+VG K +R+ +E+K F N+YIKN+ + +E+ +ELF +FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 260 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
ITS + RD G S+G GFV FST E A A+ EMN K I ++ LYV AQ+K ER
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 320 LQAQFSQMR 328
L+ Q+ R
Sbjct: 315 LRKQYEAAR 323
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 201/263 (76%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 105 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 164
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 165 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 224
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+D+ T+E+ +++F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 225 MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQ 284
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 285 AAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 344
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+ELF +GTITS KVMRD
Sbjct: 345 DDEKLRELFGPYGTITSAKVMRD 367
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 190/586 (32%), Positives = 270/586 (46%), Gaps = 121/586 (20%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN+K + + + S +D + K+ N++IKN+D+ + + +
Sbjct: 189 AANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRE 248
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG I S ++ D G+S+GFGFV F ESAQ A+D++N I ++++VG +K
Sbjct: 249 LFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKK 308
Query: 120 QERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
ERE A K + N++VKNL + DE L+++FG YGTITSA VMRD
Sbjct: 309 HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD- 367
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 227
N E D+E +A K++E+E + E+ ++
Sbjct: 368 ---------TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEK 407
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287
D G D + L G SKG GFV FS+P+E
Sbjct: 408 PADS--GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDE 445
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMY 343
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + + P+ M
Sbjct: 446 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQ 505
Query: 344 PPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
P G GQQ F+ GQ PPQ G +PG RP P P P GQQG
Sbjct: 506 PAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQYPGP---FP----GQQGG 556
Query: 403 RPGGRRGAGPVQQTQ---QPLPIMPHQMP-PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 458
R G GP QQ Q +P+ Q P P G Y P G M F GAG VP
Sbjct: 557 R-----GMGPNQQLPPNFQGIPMGAMQGPVPNGMGY--PQG--MAQVQFGRGAGGRGQVP 607
Query: 459 --VDMGAG------------IPRRD----------------ASVGQPMPITA---LSTAL 485
+MG G +P + A G+P A + AL
Sbjct: 608 GMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQAL 667
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 531
+ A P QQ+ +LGE+LYP ++ + + A K+TGMLLEM+ TE+L L
Sbjct: 668 SAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSL 713
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 21/309 (6%)
Query: 24 IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKG 82
+ + S P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 83 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES 142
+ +V + N + A++ LN LI K + +R+ KT NVF+KNLD +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 143 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 202
++ L F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 203 YVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 259
+VG K +R+ +E+K F N+YIKN+ + +E+ +ELF +FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 260 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
ITS + RD G S+G GFV FST E A A+ EMN K I ++ LYV AQ+K ER
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 320 LQAQFSQMR 328
L+ Q+ R
Sbjct: 315 LRKQYEAAR 323
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 149/263 (56%), Positives = 199/263 (75%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 169
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 229
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KNLD D++ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 230 MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQ 289
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D I
Sbjct: 290 AAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDI 349
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+ELF +GTITS KVMRD
Sbjct: 350 DDEKLRELFGPYGTITSAKVMRD 372
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 163/300 (54%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+YIKNL IDD++ +++F +FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G S+G GFV FST E A A+ EMN K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 155/333 (46%), Gaps = 75/333 (22%)
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 425 KSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 325 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPG 379
+ + P+ M P G GQQ F+ G PPQ G +PG
Sbjct: 485 QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPG 541
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGH 432
RP P P P GQQG R G GP QQ Q +P M Q P P G
Sbjct: 542 GRPGQYPGP---FP----GQQGGR-----GMGPNQQIPPNFAQGIP-MGMQGPGGIPNGM 588
Query: 433 AYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGI-------------------------- 465
Y M F GAG VP + MG G+
Sbjct: 589 GYP-----QMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGR 643
Query: 466 ---------PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
P+ A+ G + L A P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 644 GQNAAAPAGPQEGAAGG------VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKI 697
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 698 TGMLLEMDNTELLSLLEDEEALRAKVDEALSVY 730
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 34/181 (18%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNL ID + L + F +G I S K+ D E +S +A +
Sbjct: 339 NLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD----------TNVERDQSPDSAGKEK 388
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
NDK+ ++ E + ++ + K D KK FG
Sbjct: 389 EADKENDKEATPEAEKAEKAEEKPSESSEEKDKEAKKSD--------KKPFG-------- 432
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
KSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+
Sbjct: 433 --------KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 222 E 222
+
Sbjct: 485 Q 485
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/317 (50%), Positives = 229/317 (72%), Gaps = 2/317 (0%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F S A++AL LN T L K +RIM+SHRDP RK+G N+F+KNLD SI+ +L D
Sbjct: 77 FFYPSDASKALACLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDI 136
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
F FGNILSCK+A + +G+SK FGFVQF++ +SA A++ LN +++ K++FV F++K
Sbjct: 137 FCKFGNILSCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKC 195
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
ER+ + +TKF NV+VKNL E T++ ++ F E+G + + V+M+DG+GKS+ FGFVNFE
Sbjct: 196 ERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFE 255
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ D+A KAVEALNG ++ +VG+AQKK+ER++ LK + ++ + + K + NLY+K
Sbjct: 256 SPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE-KEMVNCNIGKEKASNLYVK 314
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL S+DD+KL+E FS G ITS KVMR SG+SKG GFV FST EEA +AL +NG ++
Sbjct: 315 NLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLL 374
Query: 301 VSKPLYVAVAQRKEERR 317
+ LY+A+AQRKE+R+
Sbjct: 375 HGRSLYIAMAQRKEDRQ 391
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 155/542 (28%), Positives = 259/542 (47%), Gaps = 75/542 (13%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D FS G ++S ++ D SG+S + +V F A A+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALACL 90
Query: 102 NGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
N + K ++ H R+ + KT N+FVKNLD S L+ IF ++G I
Sbjct: 91 NHTKLMGKPMRIMWSH------RDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNIL 144
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V + +GKSKCFGFV F++ D A A+ ALN D ++ +V K KK ER
Sbjct: 145 SCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER------ 197
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
KE ++ + N+Y+KNLG+ + ++ +++ FSEFG + + +M+D +G S+G GF
Sbjct: 198 ------KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGF 251
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 339
V F +P+EA +A+ +NG M+ SK L+V AQ+K ER+ L+ + +M +G
Sbjct: 252 VNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE-KEMVNCNIGKEKASN 310
Query: 340 MPMYPPGPS----GLGQQF-LYGQAPPAIIPPQ-----AGFGY--------QQQLVPGMR 381
+ + S L + F GQ A + GFG+ Q+ + +
Sbjct: 311 LYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLN 370
Query: 382 PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ-----------PLPIMPHQMPPR 430
+ ++ + + + QR P++Q QQ ++P +
Sbjct: 371 GTLLHGRSLYIAMAQRKEDRQRI-------PMKQAQQGNTNNWGYQQNSRTFATSKVPTQ 423
Query: 431 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPIT--ALSTALANA 488
G Y P + Q F + G+ SV + I A S N+
Sbjct: 424 GLNYASP---SNQKLHFKKKGNN------KSGSEEASSKGSVSEKHFIRAPAQSNVWGNS 474
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
+ ++G LYPLV L+ + A K+TGMLLEM+ ++++ LL+SP++L +V +A++
Sbjct: 475 -----KEIIGHHLYPLVHSLQPELAGKITGMLLEMNNSDIIKLLDSPDSLAVQVEQAVQA 529
Query: 549 LR 550
L+
Sbjct: 530 LK 531
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 15/225 (6%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
SA AL+ LN T L+ K + + R + ++ N+++KNL + + + D F
Sbjct: 168 SATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKF 227
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF----- 116
S FG + + I DG+G+S+GFGFV FE+ + A+ A++ LNG ++ K++FVG
Sbjct: 228 SEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAE 287
Query: 117 ---LRKQERETVAI---KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 170
L K E+E V K K +N++VKNLD S D+ L++ F G ITSA VMR G
Sbjct: 288 RQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGL 347
Query: 171 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
SK FGFV F +++A KA+ LNG R Y+ AQ+K +R++
Sbjct: 348 SKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK 91
+ +I K N+++KNLD S+D L + FSS G I S K+ SG SKGFGFV F
Sbjct: 300 NCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTS 359
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
E AQ A+ LNG L++ + +++ RK++R+ + +K
Sbjct: 360 EEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRIPMK 396
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 236/334 (70%), Gaps = 2/334 (0%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F S A++AL LN T L K +RIM+SHRDP RK+G N+F+KNLD SI+ +L D
Sbjct: 77 FFHPSDASKALACLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDI 136
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
F FGNILSCK+A + +G+SK FGFVQF++ +SA A++ LN +++ K++FV F++K
Sbjct: 137 FCKFGNILSCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKC 195
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
ER+ + +TKF NV+VKNL E T++ ++ F E+G + + V+M+DG+GKS+ FGFVNFE
Sbjct: 196 ERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFE 255
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ D+A KAVEALNG ++ +VG+AQKK+ER++ LK + ++ + + K + NLY+K
Sbjct: 256 SPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE-KEMVNCNIGKEKASNLYVK 314
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL S+DD+KL+E FS G ITS KVMR SG+SKG GFV FST EEA +AL +NG ++
Sbjct: 315 NLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLL 374
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGP 334
+ LY+A+AQRKE+R+ L+ +SQ GP
Sbjct: 375 HGRSLYIAMAQRKEDRQRVLRDYYSQYLLQYYGP 408
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 160/284 (56%), Gaps = 22/284 (7%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D FS G ++S ++ D SG+S + +V F + A A+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 102 NGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
N + K ++ H R+ + KT N+FVKNLD S L+ IF ++G I
Sbjct: 91 NHTKLMGKPMRIMWSH------RDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNIL 144
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V + +GKSKCFGFV F++ D A A+ ALN D ++ +V K KK ER
Sbjct: 145 SCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER------ 197
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
KE ++ + N+Y+KNLG+ + ++ +++ FSEFG + + +M+D +G S+G GF
Sbjct: 198 ------KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGF 251
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 323
V F +P+EA +A+ +NG M+ SK L+V AQ+K ER+ L+ +
Sbjct: 252 VNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE 295
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 162/318 (50%), Positives = 227/318 (71%), Gaps = 6/318 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD +NF + K IR+M+S RD +RKSG GN+FIKNLD+SID+K L++ FS+
Sbjct: 160 LADAQRALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSA 219
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+ FV F+N+ +A AI+++NG L+ D ++FVG F +++RE
Sbjct: 220 FGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDRE 278
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+F+
Sbjct: 279 A-ELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 337
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NGK + + +VG+AQKKSER+ ELK FEQ +E + QG+ LYIK
Sbjct: 338 SHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIK 397
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL FS FG+I+ K+MR+ G SKG G + FS+PEEA++A+AEMNG+++
Sbjct: 398 NLDDTIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRIL 456
Query: 301 VSKPLYVAVAQRKEERRA 318
SKPLY+A+AQ+ ER A
Sbjct: 457 GSKPLYIALAQKPXERNA 474
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 110 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALDT 169
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I K + L +R+ K+ NVF+KNLD S ++ L + F +G I S
Sbjct: 170 MNFDTIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 225
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G S+ + FV+F+N A +A+E +NG D +VG+ + + +RE EL+ +
Sbjct: 226 SKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNK 284
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
++F N+YIKN GD +DDE+LKE+FS++G S KVM D SG SKG GFV
Sbjct: 285 --------ANEFT--NVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFV 334
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNGK I + L+V AQ+K ER+A L+ F Q++
Sbjct: 335 SFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLK 382
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 26/214 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
VA K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 101 NVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKL 160
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 238
DA +A++ +N FD +KG+ + M D + G+ N++
Sbjct: 161 ADAQRALDTMN---FD-----------------TIKGKPIRLMWSQRDAYLRKSGIGNVF 200
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L E FS FG I S KVM D G S+G FV F A RA+ EMNG
Sbjct: 201 IKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGA 259
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
++ L+V + +++R A L+ + ++ V +
Sbjct: 260 LLKDCRLFVGRFKNRKDREAELRNKANEFTNVYI 293
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/264 (56%), Positives = 202/264 (76%), Gaps = 3/264 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 130 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 189
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 190 SCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 249
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+++ TDE+ + +F +YG ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 250 MKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAA 309
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+ AVEALN + ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 310 SAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 369
Query: 246 IDDEKLKELFSEFGTITSCKVMRD 269
IDDEKL+ELFS +G ITS KVMR+
Sbjct: 370 IDDEKLRELFSSYGNITSAKVMRE 393
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 181/655 (27%), Positives = 293/655 (44%), Gaps = 160/655 (24%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN K + + + + +D + K+ NI++KN+++ + +
Sbjct: 214 AATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRG 273
Query: 60 TFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
F +G I S ++ D +G+S+GFGFV F + E+A A++ LN + ++++VG +
Sbjct: 274 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQK 333
Query: 119 KQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
K ERE A K + N+++KNL + DE L+++F YG ITSA VMR+
Sbjct: 334 KHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 393
Query: 167 G--DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 224
D ++ ++ + + + G K +++ +++ KS+ E++ +G+ E A
Sbjct: 394 AIVDVPAETE-----KDKEADKEKAKKETGDKSEEKGESKSESEDKSKSEEKTEGKTESA 448
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 284
E K+LG S KG GFV FS
Sbjct: 449 KPEK-----------KHLGKS-----------------------------KGFGFVCFSN 468
Query: 285 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-----SQMRPV-AMGPSVPP 338
P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R++++ + SQ+ + + S+
Sbjct: 469 PDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIHFLRSQVTNIYQLEASIQA 528
Query: 339 RMPMYP---PGPSGLGQQFLYGQAPPAII---PPQAGF-----------GYQQQLVPGMR 381
R + +G+ Q F+ PA+ P Q GF G ++PGM
Sbjct: 529 RNTIRQQQVAAAAGMAQPFMQ----PAVFYGAPGQQGFLPGAQRGMQFAGQAGMVMPGM- 583
Query: 382 PAGAPMPNFFVPVVSQGQQGQRPG--GRRGAGPVQQTQQPLP---IMPHQMPPRG----- 431
P G P GQ Q PG G RG P QPLP M Q P G
Sbjct: 584 PGGRP-----------GQFPQFPGQQGGRGMNP----NQPLPPNFAMSGQGIPMGAMQGT 628
Query: 432 ---HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG-IPRRDASVGQP-------MPIT- 479
+ YP +Q F G G + AG P+ G P MPI
Sbjct: 629 GIPNGLNYPQLGQVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGGPGAPGFAQGRSMPIQQ 688
Query: 480 ----------------------------ALSTALANASPE-QQRTLLGESLYPLVEQLER 510
+++ A+ NA+PE QQ+ +LGE++YP + +
Sbjct: 689 GGRAGPGGRGQGAPGQGGIPRDEAAGSGSINLAVFNAAPEPQQKQMLGEAIYPKILAQQP 748
Query: 511 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
+ A K+TGMLLEMD +E++ L++ AL+AKV EA+ V + + + P + A
Sbjct: 749 ELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVYDEYVKNKNDAPTGEAA 803
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 66 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 125
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI + + +R+ KT NVF+KNLD + ++ L
Sbjct: 126 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 181
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 182 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 241
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KN+ + DE+ + LF ++G ITS + R
Sbjct: 242 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 288
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+
Sbjct: 289 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 348
Query: 328 R 328
R
Sbjct: 349 R 349
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/264 (56%), Positives = 202/264 (76%), Gaps = 3/264 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 114 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 173
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 174 SCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 233
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+++ TDE+ + +F +YG ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 234 MKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAA 293
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+ AVEALN + ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 294 SAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 353
Query: 246 IDDEKLKELFSEFGTITSCKVMRD 269
IDDEKL+ELFS +G ITS KVMR+
Sbjct: 354 IDDEKLRELFSSYGNITSAKVMRE 377
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 187/660 (28%), Positives = 288/660 (43%), Gaps = 169/660 (25%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN K + + + + +D + K+ NI++KN+++ + +
Sbjct: 198 AATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRG 257
Query: 60 TFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
F +G I S ++ D +G+S+GFGFV F + E+A A++ LN + ++++VG +
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQK 317
Query: 119 KQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
K ERE A K + N+++KNL + DE L+++F YG ITSA VMR+
Sbjct: 318 KHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
V E D E + D E K + KSE E + K
Sbjct: 378 ------AIVDVPAETEKDKEADKEKAKKEGGDKSEE---KGESKSESEDKSK-------- 420
Query: 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
+EK + G S K + G SKG GFV FS P+
Sbjct: 421 --------------------SEEKTE------GKTESTKPEKKHLGKSKGFGFVCFSNPD 454
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERRAR--------LQAQFSQMRPVAMGPSVPP 338
EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++ +++QF+ + + S+
Sbjct: 455 EASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIHLIRSQFTNI--YQLEASIQA 512
Query: 339 RMPMYP---PGPSGLGQQFLYGQAPPAII---PPQAGF-----------GYQQQLVPGMR 381
R + +G+ Q F+ PA+ P Q GF G ++PGM
Sbjct: 513 RNTIRQQQVAAAAGMAQPFMQ----PAVFYGAPGQQGFLPGAQRGMQFAGQAGMVMPGM- 567
Query: 382 PAGAPMPNFFVPVVSQGQQGQRPG--GRRGAGPVQQTQQPLPI---MPHQMPPRG----- 431
P G P GQ Q PG G RG P QPLP M Q P G
Sbjct: 568 PGGRP-----------GQFPQFPGQQGGRGMNP----NQPLPPNFGMGSQGIPMGAMQGA 612
Query: 432 ---HAYRYP-LGRNMQDF---------------PFDMGAGSMLPVP----VDMGAGIPR- 467
+ YP +G +Q F P A M P G G+P
Sbjct: 613 GIPNGLNYPQIGGQVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGGPGAPGFAQGRGMPMQ 672
Query: 468 ---------------------RDASVGQPMPITALSTALANASPE-QQRTLLGESLYPLV 505
RD + G +++ A+ NA+PE QQ+ +LGE++YP +
Sbjct: 673 QGGRAGPGGRGQGAPGQGGIPRDEAAGS----GSINLAVFNAAPEPQQKQMLGEAIYPKI 728
Query: 506 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
+ + A K+TGMLLEMD +E++ L++ AL+AKV EA+ V + + + P + A
Sbjct: 729 LAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVYDEYVKNKNDAPTGEAA 788
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI + + +R+ KT NVF+KNLD + ++ L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KN+ + DE+ + LF ++G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 272
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 332
Query: 328 R 328
R
Sbjct: 333 R 333
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 274/480 (57%), Gaps = 86/480 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 114 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 173
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 174 SCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 233
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+++ TDE+ + +F +YG ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 234 MKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAA 293
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+ AVEALN + ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 294 SAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 353
Query: 246 IDDEKLKELFSEFGTITSCKVMRDP----------------------SGISKGSGFVAFS 283
IDDEKL+ELFS +G ITS KVMR+ +G A S
Sbjct: 354 IDDEKLRELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKS 413
Query: 284 TPEEASRALAEMNGKMIVSKP--------------------------------------L 305
E+ S++ + GK +KP L
Sbjct: 414 ESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPL 473
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP--RMPMYPPGPSGLGQQFLYGQAPPAI 363
YVA+AQRK+ R+++L+ + + + +PP R P PS + L +A +
Sbjct: 474 YVALAQRKDVRKSQLETPSANSKLL-----LPPEWRNPSCSL-PSSMAH--LASKASSPV 525
Query: 364 IPPQAGFGYQQQLV-PGMRPAGAP--MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPL 420
+ + + V PGM P+G P P F GQQG R G+ G + +QPL
Sbjct: 526 LSVECSLLVKLVWVMPGM-PSGRPGQFPQF------PGQQGGRAPGQ---GGIHAMKQPL 575
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI + + +R+ KT NVF+KNLD + ++ L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KN+ + DE+ + LF ++G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 272
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 332
Query: 328 R 328
R
Sbjct: 333 R 333
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 477 PITALSTALANASPE-QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 535
P+ ++ A+ NA+PE QQ+ +LGE++YP + + + A K+TGMLLEMD +E++ L++
Sbjct: 574 PLRSIILAVFNAAPESQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDD 633
Query: 536 EALKAKVAEAMEVLRSVAQQQANNPADQLA 565
AL+AKV EA+ V + + + PA + A
Sbjct: 634 VALRAKVDEALTVYDEYVKNKNDAPAGEAA 663
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 200/507 (39%), Positives = 284/507 (56%), Gaps = 61/507 (12%)
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIK 128
++ D G SKG+GFV FE +E+A AI+ +NGML+ND++VFVG+F ++ERE +
Sbjct: 127 QVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEELGSKA 185
Query: 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 188
KF NV++KN E TDE LK++F +G S VM+D G+S+ FGFVNF + DA KA
Sbjct: 186 LKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKA 245
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
V+ +NG + + + YVG+AQK+ ER+ ELK +FE ++ + ++QG+NLY+KNL D IDD
Sbjct: 246 VDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDD 305
Query: 249 EKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
E+L++ F+ +GTITS KVM D P S+G GFV FS+PEEA++A+ EMNG+++ +KPLYV
Sbjct: 306 ERLRKEFAPYGTITSAKVMTDGPQ--SRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 363
Query: 308 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ 367
A+AQR+EER+A L ++ Q R + P + Y QQ Y P PP
Sbjct: 364 ALAQRREERKAILTNKYMQ-RLATLRTMSSPVIDSY--------QQAGYYMTVPQ--PPT 412
Query: 368 AGFGYQQQLVPGMR--PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 425
F Y V MR P P+ QG G RRG+ P+ +Q P+
Sbjct: 413 RSF-YSPNAVSAMRALPRWTGQPHRL-----QGPYTIVSGPRRGSTPIASVRQASTQAPN 466
Query: 426 QMP----------------------PRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMG 462
+ PR Y+Y RN Q + V
Sbjct: 467 IISSAQKTNNIGTQTVGGRADIPGIPRSGQYKYSSAVRNAQHV-----------IAVHAP 515
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
P+ + P+TA + LA A Q+ LLGE LYPL+ L + A K+TGMLLE
Sbjct: 516 PTRPQPSVHIQGQEPLTA--SMLAAAPLMDQKQLLGERLYPLISALHPNLAGKITGMLLE 573
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVL 549
+D +E+LH+LE+PE+L +KV+ L
Sbjct: 574 IDNSELLHMLETPESLHSKVSSRSSTL 600
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 141/260 (54%), Gaps = 28/260 (10%)
Query: 6 SAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + + R + G+ N++IKN + + L +
Sbjct: 148 AANRAIETMNGMLLNDRKVFVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKE 207
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
FS+FG LS ++ D G+S+GFGFV F + AQ A+D++NG +N K ++VG ++
Sbjct: 208 VFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKR 267
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+ +K KF N++VKNLD+ DE L+K F YGTITSA VM D
Sbjct: 268 LERQG-ELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTD 326
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
G +S+ FGFV F + ++A KAV +NG+ + YV AQ++ ER+ L ++ Q +
Sbjct: 327 GP-QSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRLA 385
Query: 227 E-------TVDKFQGLNLYI 239
+D +Q Y+
Sbjct: 386 TLRTMSSPVIDSYQQAGYYM 405
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 147/264 (55%), Positives = 201/264 (76%), Gaps = 3/264 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 114 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 173
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 174 SCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 233
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+++ TDE+ + +F +YG ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 234 MKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAA 293
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+ AVE LN + ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 294 SAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 353
Query: 246 IDDEKLKELFSEFGTITSCKVMRD 269
IDDEKL+ELFS +G ITS KVMR+
Sbjct: 354 IDDEKLRELFSSYGNITSAKVMRE 377
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 180/624 (28%), Positives = 277/624 (44%), Gaps = 116/624 (18%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN K + + + + +D + K+ NI++KN+++ + +
Sbjct: 198 AATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRS 257
Query: 60 TFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
F +G I S ++ D +G+S+GFGFV F + E+A A++ LN + ++++VG +
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQK 317
Query: 119 KQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
K ERE A K + N+++KNL + DE L+++F YG ITSA VMR+
Sbjct: 318 KHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
++ + + + G K +D KA+ KS+ + E K + E+
Sbjct: 378 AISDVPA---DAEKDKEADKEKAKKETGDKPED------KAETKSDEKSEDKSKSEE--- 425
Query: 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
+T K G K+LG S KG GFV FS P+
Sbjct: 426 KTEGKTDGAKTEKKHLGKS-----------------------------KGFGFVCFSNPD 456
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMG---PSV 336
EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G P +
Sbjct: 457 EASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMAQPFM 516
Query: 337 PPRMPMYPPGPSGL------GQQFLYGQAP------PAIIPPQAGFGYQQQLVPGMRPAG 384
P + PG G G QF GQA P P Q QQ GM P
Sbjct: 517 QPAVFYGAPGQQGFLPGAQRGMQFA-GQAGMVMPGMPGGRPGQFAQFPGQQGGRGMNP-N 574
Query: 385 APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP------------LPIMPHQMPP-RG 431
P+P P + G QG G +GAG P MPP G
Sbjct: 575 QPLP----PNFAMGGQGIPMGAMQGAGIPNGLNYPQMGQSFGRGGGRGQGPMQGMPPAAG 630
Query: 432 HA---------YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
+A Y GRNM G+PR +A+ + + +
Sbjct: 631 NAPPMRGGPGGPGYSQGRNMPMQQGGRPGPGGRGQGAPGQGGMPRDEAAGPGSINLQVFN 690
Query: 483 TALANASPEQQ-RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
A PE Q + +LGE++YP + + + A K+TGMLLEMD +E++ L++ AL+AK
Sbjct: 691 AA-----PEPQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDAALRAK 745
Query: 542 VAEAMEVLRSVAQQQANNPADQLA 565
V EA+ V + + + PA + A
Sbjct: 746 VDEALTVYDEYVKNKNDAPAGEAA 769
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI + + +R+ KT NVF+KNLD + ++ L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+Y+KN+ + DE+ + LF ++G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSR 272
Query: 269 D-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D +G S+G GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 332
Query: 328 R 328
R
Sbjct: 333 R 333
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 147/266 (55%), Positives = 202/266 (75%), Gaps = 3/266 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 42 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 101
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 102 SCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 161
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN+++ TDE+ + +F +YG ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 162 MKANFTNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAA 221
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+ AVE LN + ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 222 SAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 281
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPS 271
IDDEKL+ELFS +G ITS KVMR+ +
Sbjct: 282 IDDEKLRELFSSYGNITSAKVMREAT 307
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 181/633 (28%), Positives = 278/633 (43%), Gaps = 136/633 (21%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN K + + + + +D + K+ NI++KN+++ + +
Sbjct: 126 AATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRA 185
Query: 60 TFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
F +G+I S ++ D +G+S+GFGFV F + E+A A++ LN + ++++VG +
Sbjct: 186 LFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQK 245
Query: 119 KQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
K ERE A K + N+++KNL + DE L+++F YG ITSA VMR+
Sbjct: 246 KHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 305
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
+ V E+ D K D+E G+A +K+E E
Sbjct: 306 ATAE------VPTESDKD-----------KEADKEKAKGEAGEKTEEGPE---------- 338
Query: 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
G + D + K G K + G SKG GFV FS P+
Sbjct: 339 ----------------GKTDDKSEEKTEEKTEGKTEGAKPEKKHLGKSKGFGFVCFSNPD 382
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMG---PSV 336
EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G P +
Sbjct: 383 EASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMPQPFM 442
Query: 337 PPRMPMYPPGPSGL----------------------------------GQQFLYGQAPPA 362
P + PG G GQQ G P
Sbjct: 443 QPAVFYGTPGQQGFLPGAQRGGMQFAGQAGMVMPGMPGGRPAQFAQFPGQQGGRGMNPNQ 502
Query: 363 IIPPQAGFGYQQQLVPGMRPAGAPMPN-FFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP 421
+PP G Q + M+ GA MPN P ++Q Q R GGR QP+
Sbjct: 503 PLPPNFAMGGQSLPMGAMQ--GAGMPNGLNYPQMAQVQSFGRGGGR---------GQPMQ 551
Query: 422 IMPHQMPPRGHA--------YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
MP P G+A + GRNM G+PR + +
Sbjct: 552 GMP---PATGNAPPIRGPGGPGFSQGRNM-PMQGGRPGPGGRGQGAPGQGGMPRDETAGP 607
Query: 474 QPMPITALSTALANASPE-QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 532
+ + A NA+PE QQ+ +LGE++YP V + + A K+TGMLLEMD +E++ L+
Sbjct: 608 SSINLQAF-----NAAPEPQQKQMLGEAIYPKVLAQQPELAGKITGMLLEMDNSELIGLV 662
Query: 533 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
+ AL+AKV EA+ V + + P+ + A
Sbjct: 663 DDDAALRAKVDEALTVYDEYVKNKTEAPSGEAA 695
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 21/182 (11%)
Query: 148 LKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206
L ++F G + S V RD +S + +VN+ N D +A+E LN R +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 207 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
+Q+ + A+++T QG N++IKNL +ID++ L + F+ FG I SCKV
Sbjct: 62 SQR------------DPALRKTG---QG-NVFIKNLDTAIDNKALHDTFAAFGNILSCKV 105
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
+D G SKG GFV + T E A+ A+ +NG ++ K ++V K++R Q++F +
Sbjct: 106 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDR----QSKFEE 161
Query: 327 MR 328
M+
Sbjct: 162 MK 163
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/345 (48%), Positives = 221/345 (64%), Gaps = 36/345 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF +N KS+RIM+S RDPS+RKSG
Sbjct: 65 AERALDTMNFDVINGKSVRIMWSQRDPSLRKSG--------------------------- 97
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 98 -----VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREAEL 151
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV+VKN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 152 GARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGED 211
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ LNGK+ ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QGLNLY+K L D
Sbjct: 212 AQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDD 271
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNGK++ +KP
Sbjct: 272 YIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKP 330
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
LYVA+AQRKEER+A L + P P P PSG
Sbjct: 331 LYVALAQRKEERQAHLTNEHMHRTASVRAVPNPASKPYQPAPPSG 375
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 135/234 (57%), Gaps = 21/234 (8%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N+++KN + +D + L D
Sbjct: 118 AAERAIEKMNGMLLNDQKVFVGRFKSRKEREAELGARAKEFTNVYVKNFGEDMDDEHLKD 177
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD G+SKGFGFV FE E AQ A+D+LNG ++ KQ++VG +K
Sbjct: 178 LFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRAQKK 237
Query: 120 QERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
ER+T +K KF N++VK LD+ DE L+K F +GTITSA VM +
Sbjct: 238 VERQT-ELKRKFEQMKQDKITRYQGLNLYVKYLDDYIDDERLRKEFSPFGTITSAKVMME 296
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
G G+SK FGFV F + ++A KAV +NGK + YV AQ+K ER+ L +
Sbjct: 297 G-GRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLTNE 349
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 58/77 (75%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L +A+P+QQ+ +LGE L+PL++ A K+TGMLLEMD +E+LH+LESPE+L++KV E
Sbjct: 518 LVSAAPQQQKQMLGERLFPLIQARRPTLAGKITGMLLEMDNSELLHMLESPESLRSKVDE 577
Query: 545 AMEVLRSVAQQQANNPA 561
A+ VL++ ++A A
Sbjct: 578 AVAVLQAHQAKEAAQKA 594
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V F P++A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +I K + + +QR
Sbjct: 72 MNFDVINGKSVRIMWSQR 89
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 197/263 (74%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 101 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNIL 160
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 161 SCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 220
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D TD++ + +F +G ITSA + D DGKS+ FGFVN+ N + A
Sbjct: 221 MKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAE 280
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D I
Sbjct: 281 AAVAEMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDI 340
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL++LF+ +GTITS KVMRD
Sbjct: 341 DDEKLRDLFTPYGTITSAKVMRD 363
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N + A+
Sbjct: 44 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 103
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 104 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNI 159
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D SK +GFV++E A+ A A++ +NG +D++ +VG K +R+ +
Sbjct: 160 LSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 219
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ I D++ + +F FG ITS + D G S+
Sbjct: 220 EMKANF-------------TNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSR 266
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV ++ E A A+AEMN K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 267 GFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAAR 319
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 148/304 (48%), Gaps = 52/304 (17%)
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 331
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A +
Sbjct: 424 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 483
Query: 332 MGPSVPPRMPMYPPGPSGLGQQFL-----YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 386
+ +G+ Q F+ YG +PP Q+ +P G P
Sbjct: 484 QQQAA---------AAAGMPQPFMQPAVFYGAGQQGFMPPG-----QRGGMPFAPQGGMP 529
Query: 387 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP-----PRGHAYRYPLGRN 441
MPN +P G P G RG P QQ MP M P G Y P
Sbjct: 530 MPN--MPGGRPQYPGPFPQGGRGMPPNQQLPPNFQGMPMGMQAPGGIPNGMGYPMP---- 583
Query: 442 MQDFPFDMGAGSMLPVPVDM---------------GAGIPRRDASVGQPM--PITALSTA 484
Q F G + +P++M G G P A GQP P +A + A
Sbjct: 584 -QAFGRGGGGRGVPGMPMNMRGGPGFGRGGPQMGRGRGQP---APGGQPAGEPASA-NQA 638
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L A P QQ+ +LGE+LYP ++ + + A K+TGMLLEMD E+L LL+ EAL+ KV E
Sbjct: 639 LLAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLLDDEEALRGKVDE 698
Query: 545 AMEV 548
A+ V
Sbjct: 699 ALNV 702
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
GKSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+ +
Sbjct: 424 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 477
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 197/263 (74%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 101 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNIL 160
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 161 SCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 220
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D TD++ + +F +G ITSA + D DGKS+ FGFVN+ N + A
Sbjct: 221 MKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAE 280
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D I
Sbjct: 281 AAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDI 340
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL++LF+ +GTITS KVMRD
Sbjct: 341 DDEKLRDLFTPYGTITSAKVMRD 363
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N + A+
Sbjct: 44 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 103
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 104 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNI 159
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D SK +GFV++E A+ A A++ +NG +D++ +VG K +R+ +
Sbjct: 160 LSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 219
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ I D++ + +F FG ITS + D G S+
Sbjct: 220 EMKANF-------------TNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSR 266
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV ++ E A A+AEMN K + ++ LYV AQ+K ER L+ Q+ R
Sbjct: 267 GFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAAR 319
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 148/304 (48%), Gaps = 49/304 (16%)
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 331
G SKG GFV FS+P+EAS+A+ EMN +M+ +KPLYVA+AQRK+ RR++L+A +
Sbjct: 423 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKDVRRSQLEASIQARNTIR 482
Query: 332 MGPSVPPRMPMYPPGPSGLGQQFL-----YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 386
+ +G+ Q F+ YG +PP Q+ +P G P
Sbjct: 483 QQQAA---------AAAGMPQPFMQPAVFYGAGQQGFMPPG-----QRGGMPFAPQGGMP 528
Query: 387 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP-----PRGHAYRYPLGRN 441
MPN +P G P G RG P QQ MP M P G Y P
Sbjct: 529 MPN--MPAGRPQYPGPFPQGGRGMPPNQQLPPNFQGMPMGMQAPGGIPNGMGYPMP---- 582
Query: 442 MQDFPFDMGAGSMLPVPVDMGAG--------------IPRRDASVGQPM---PITALSTA 484
Q F G + +P++M G + A GQP P +A + A
Sbjct: 583 -QAFGRGGGGRGVPGMPMNMRGGPGFSRGGPQMGRGGGRGQPAPGGQPAGGEPASA-NQA 640
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L A P QQ+ +LGE+LYP ++ + + A K+TGMLLEMD E+L LL+ EAL+ KV E
Sbjct: 641 LLAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLLDDEEALRGKVDE 700
Query: 545 AMEV 548
A+ V
Sbjct: 701 ALNV 704
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 199/263 (75%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 103 KALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL 162
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K+ER +
Sbjct: 163 SCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 222
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D TD++ + +F ++G ITSA + RD GKS+ FGFVN+ + A+
Sbjct: 223 MKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAAS 282
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE LN +F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D +
Sbjct: 283 VAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDV 342
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+++F+ FGTITS KVMRD
Sbjct: 343 DDEKLRDMFTPFGTITSAKVMRD 365
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 153/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + + E + A+
Sbjct: 46 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 105
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 106 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 161
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K ER +
Sbjct: 162 LSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE 221
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + D++ ++LF + G ITS + RD G S+
Sbjct: 222 EMKANF-------------TNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSR 268
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 269 GFGFVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAAR 321
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 49/65 (75%)
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
AL++A P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 657 ALSSAPPGQQKQMLGEALYPKIHEMQPEFAGKITGMLLEMDNSELINLTSDEAALRAKVE 716
Query: 544 EAMEV 548
EAM V
Sbjct: 717 EAMSV 721
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
GKSK FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 424 GKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKDVRKNQLEATIQ 477
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 199/263 (75%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 104 KALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K+ER +
Sbjct: 164 SCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D +D+D + +F ++G ITSA + RD GKS+ FGFVN+ + A+
Sbjct: 224 MKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAAS 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ALN F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D +
Sbjct: 284 AAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDV 343
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+++F+ FGTITS KVMRD
Sbjct: 344 DDEKLRDMFTPFGTITSAKVMRD 366
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L ++F G + S V RD +S + +VN+ +++D KA+E
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 109 LNYTVIKGKPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDHAIDNKAL 152
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 153 HDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 212
Query: 312 RKEERRAR---LQAQFSQM 327
K+ER ++ ++A F+ +
Sbjct: 213 PKKERMSKFEEMKANFTNI 231
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+AL A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 658 SALQGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTADEAALRAKV 717
Query: 543 AEAMEVLRSVAQQQANNP 560
EAM V + + P
Sbjct: 718 DEAMSVYDEYVKNKEGEP 735
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 200/263 (76%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 104 KALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K+ER +
Sbjct: 164 SCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D +DE+ +++F ++G ITSA + RD GKS+ FGFVN+ + A+
Sbjct: 224 MKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAAS 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ALN F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D +
Sbjct: 284 AAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDV 343
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+++F+ FGTITS KVMRD
Sbjct: 344 DDEKLRDMFTPFGTITSAKVMRD 366
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 153/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + + E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K ER +
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + DE+ +ELF + G ITS + RD G S+
Sbjct: 223 EMKANF-------------TNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSR 269
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 74/289 (25%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIR--------KSGTGNIFIKNLDKSIDHKAL 57
+A A+ +N LN K ++ H P K+ NI++KN+D + +
Sbjct: 188 AANNAIKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEF 245
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F G+I S IA D G+S+GFGFV + E+A A+D LN ++++VG
Sbjct: 246 RELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Query: 118 RKQERET----------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 165
+K ERE + ++K+ N+++KNL++ DE L+ +F +GTITSA VMR
Sbjct: 306 KKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMR 365
Query: 166 D----------GD------------------------------------------GKSKC 173
D GD GKSK
Sbjct: 366 DAMPAERSETPGDEKKEESKEEAEKTEESKEGADDKKDENKPGEKVTIKGEKKILGKSKG 425
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 426 FGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 474
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 50/66 (75%)
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+AL+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 658 SALSGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTSDEAALRAKV 717
Query: 543 AEAMEV 548
EAM V
Sbjct: 718 EEAMSV 723
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/312 (50%), Positives = 225/312 (72%), Gaps = 6/312 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +RKSG GN+FIKNLD+SID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ D +VFVG F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F NV++KN + DE L+++F +YG S VM D GKSK FGFV+F+
Sbjct: 180 A-ELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
N + A KAVE +NGK + + +VG+AQKK ER+ ELK FEQ +E + K QG+ LYIK
Sbjct: 239 NHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL++ FS FG+I+ KVM++ G SKG G + FS+PEEA++A+ EMNG+++
Sbjct: 299 NLDDTIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEEATKAMTEMNGQIL 357
Query: 301 VSKPLYVAVAQR 312
SKPL +A++Q+
Sbjct: 358 GSKPLNIALSQK 369
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + L +R+ K+ NVF+KNLD S ++ L + F +G I
Sbjct: 70 TMNFDMIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G SK + FV+F+N A +A+E +NGK D + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ + N+YIKN GD +DDE+L+E+FS++G S KVM DPSG SKG GF
Sbjct: 185 KASEFT----------NVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F E A +A+ EMNGK I + ++V AQ+K ER+A L+ F Q +
Sbjct: 235 VSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQK 283
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 24/213 (11%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
V K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 2 NVEAKYRMASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGL-NLYI 239
DA KA++ +N FD GK+ + S+R+ L+ G+ N++I
Sbjct: 62 ADAQKALDTMN---FD---MIKGKSIRLMWSQRDACLRKS-------------GIGNVFI 102
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK+
Sbjct: 103 KNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKL 161
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ ++V + +++R A L+ + S+ V +
Sbjct: 162 LKDCKVFVGRFKNRKDREAELRNKASEFTNVYI 194
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 144/264 (54%), Positives = 204/264 (77%), Gaps = 3/264 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN++ TD++ + +F +YG +TS+ + RD + GKS+ FGFVNF + +DA
Sbjct: 237 MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDA 296
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+KAV+ LN K+F + YVG+AQKK ERE+EL+ +E A +E K+QG+NLYIKNL D
Sbjct: 297 SKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDE 356
Query: 246 IDDEKLKELFSEFGTITSCKVMRD 269
+DDEKL++LFSEFG ITS KVMRD
Sbjct: 357 VDDEKLRQLFSEFGPITSAKVMRD 380
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + A++A++ +NG ++++ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGIS 274
E+K F N+Y+KN+ + D++ + LF ++G +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F++ E+AS+A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 70/287 (24%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYS--HRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A++A+ +N LN K + + + +D + K+ NI++KN++ +
Sbjct: 201 AASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRT 260
Query: 60 TFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
F +G++ S +A D +G+S+GFGFV F + E A A+ +LN + + ++VG +
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQK 320
Query: 119 KQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
K ERE A K + N+++KNLD+ DE L+++F E+G ITSA VMRD
Sbjct: 321 KHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Query: 167 -----------------------------GDGKS------------------KCFGFVNF 179
GD K FGFV F
Sbjct: 381 SITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCF 440
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
N DDA KAV +N + +++ YV AQ+K R K Q EQ+++
Sbjct: 441 ANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDVAIDNKAL 165
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV +D +G SKG GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 312 RKEERRAR---LQAQFSQMRPVAMGPSV 336
K++R+++ ++A F+ + + P V
Sbjct: 226 PKKDRQSKFDEMKANFTNIYVKNINPEV 253
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
+P QQ+ +LGE+++P ++ + + A K+TGMLLEMD TE++ L+E+ AL++KV EA+ V
Sbjct: 676 NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAV 735
Query: 549 LRSVAQQQANNPADQLAS 566
+QQ + Q S
Sbjct: 736 YDDYVRQQGDGEGAQAPS 753
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 147/264 (55%), Positives = 202/264 (76%), Gaps = 3/264 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 113 KALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNIL 172
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R +
Sbjct: 173 SCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEE 232
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKN+D TD++ +++F +YG ITSA + D + GKS+ FGFVNF + A
Sbjct: 233 MKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESA 292
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
AKAV+ LN K + ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D
Sbjct: 293 AKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDD 352
Query: 246 IDDEKLKELFSEFGTITSCKVMRD 269
+DDEKL+++F+ FGTITS KVMRD
Sbjct: 353 VDDEKLRDMFAPFGTITSAKVMRD 376
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + + + + A+
Sbjct: 56 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKAL 115
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 116 EELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNI 171
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E A+ A A++A+NG ++++ +VG K +R +
Sbjct: 172 LSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFE 231
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGIS 274
E+K F N+Y+KN+ + D++ +ELF ++G ITS + D +G S
Sbjct: 232 EMKANF-------------TNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKS 278
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F E A++A+ E+N K + LYV AQ+K ER L+ Q+ R
Sbjct: 279 RGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAAR 332
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 162/333 (48%), Gaps = 57/333 (17%)
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 331
G SKG GFV FS P+EA++A+ EMN KM+ KPLYVA+AQRK+ R+++L+A +
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEATIQARNQIR 499
Query: 332 MGP-----SVPPRMPMYPPGPSGLGQQ-FL--YGQAP--------------PAIIPPQAG 369
M +P + + P G GQQ F+ GQ P P +P Q G
Sbjct: 500 MQQAAAAAGMPTQQFVQPQMFFGPGQQPFMGGRGQMPFPQGMPAGGRGAGFPQGMPMQGG 559
Query: 370 FG--YQQQLVP-GMRPAGAPMPNFFVPVVS----------QGQQGQRPGGRRGAGPVQQT 416
G QQ+ P GM GAP+P P + Q G R GG RG P
Sbjct: 560 RGGPNAQQIPPMGMPFPGAPLPGGIPPQYNPAYAQMLAAQQAAMGGR-GGSRGPMPGMPG 618
Query: 417 QQPLPIMPHQMPPR---GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
+P M Q+P G R RN FP A P P G G+ D S
Sbjct: 619 MPGMPQMAGQIPANNRGGPNNRGGANRNQPGFPSGRPAPGQAPTP---GEGV---DLS-- 670
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
AL +A+P QQ+ +LGE+LYP + ++ + A K+TGMLLEMD TE+++L
Sbjct: 671 ----------ALQSAAPPQQKQMLGEALYPKIHAMQPELAGKITGMLLEMDNTELINLTS 720
Query: 534 SPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 566
AL+AKV EAM V + Q + + P D+ A+
Sbjct: 721 DENALRAKVDEAMGVYQEYIQSKGDGPQDENAA 753
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
GKSK FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEATIQ 493
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 161/278 (57%), Positives = 214/278 (76%), Gaps = 4/278 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 65 ADAERALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 124
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D SG SKG+GFV FE +E+A +IDK+NGML+N K+VFVG F+ ++ERE
Sbjct: 125 GNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREK 184
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ K K F NV+VKN E TD+ LK++F +YG ITS V+ + D KS+ FGFV FE+
Sbjct: 185 ELGEKAKLFTNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDP 244
Query: 183 DDAAKAVEALNGKK-FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A +AVE LNGK+ + ++ YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KN
Sbjct: 245 EAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKMERMNRYQGVNLYVKN 304
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
L D+IDDE+L++ FS FGTITS KVM + SKG GF
Sbjct: 305 LDDTIDDERLRKEFSPFGTITSAKVMLEERR-SKGFGF 341
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 165/289 (57%), Gaps = 16/289 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N + + + + +R+ K+ NVF+KNLD++ ++ + F +G I S
Sbjct: 74 MNFDTLKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 129
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V +D G SK +GFV+FE + A K+++ +NG + ++ +VGK + ERE+EL
Sbjct: 130 CKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELG-- 187
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
E+A T N+Y+KN G+ D+ LKE+F ++G ITS V+ + S+G GFV
Sbjct: 188 -EKAKLFT-------NVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFV 239
Query: 281 AFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
AF PE A RA+ ++NGK I+ K LYV AQ+K ER+ L+ +F Q++
Sbjct: 240 AFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLK 288
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 142/263 (53%), Positives = 199/263 (75%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 118 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 177
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D SG SKG+GFV +E E+A AI +NGML+N+K+VFVGH + K++R++
Sbjct: 178 SCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE 237
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+ TD+ +++F ++G +TSA + RD GK++ FGFVNF N + A+
Sbjct: 238 MKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHAS 297
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E K+QG+NLY+KNL D +
Sbjct: 298 AAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDV 357
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+ELF+ +G ITS KVMRD
Sbjct: 358 DDEKLRELFAPYGAITSAKVMRD 380
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 157/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 61 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 121 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 176
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ +VG K +R+ +
Sbjct: 177 LSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFE 236
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ D++ +ELF +FG +TS + RD +G ++
Sbjct: 237 EMKANF-------------TNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNR 283
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F E AS A+ E+NGK + + LYV AQ+K ER L+ + R
Sbjct: 284 GFGFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAAR 336
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 160/349 (45%), Gaps = 93/349 (26%)
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 331
G SKG GFV F+ P+EA++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A +
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQIR 506
Query: 332 MGPSVPPRMPMYPPGPSGLGQQFLYGQAP--------PAIIPPQAG-----FGYQQQL-V 377
M + +GL QQF+ QAP P +PP AG F QQ + +
Sbjct: 507 MQQAA---------AAAGLPQQFI--QAPMFYGPGQQPGFMPPNAGGRGMPFPLQQGMGI 555
Query: 378 P--GMRPA------------GAPMPNFFVPVVSQGQQGQ-RPGGRRG-AGPVQ------- 414
P G RP G P P P V G GQ PG G AG Q
Sbjct: 556 PAQGARPGQYPNFPPQQAGRGGPGPQQLPPSVY-GLPGQFSPGAPYGQAGNPQFLAAMQQ 614
Query: 415 -----------------QTQQPLPIMPHQM-----------PPRGHAYRYPLGRNMQDFP 446
Q LP MP M PP+ + + GR M P
Sbjct: 615 AQAAALAGAGRGGPGGRMPMQALPGMPPNMAGLQGVPGPGMPPQAYRQQNNAGRGMPGRP 674
Query: 447 FDMGAGSMLPVPVDMGAGIPRRDASVGQ-PMP------ITALSTALANASPEQQRTLLGE 499
AG P GA R + GQ P+P +AL L A P QQ+ LLGE
Sbjct: 675 GQ--AGGFPP----QGA---RSTSQAGQAPVPGASQEGASALQAQLTTAPPAQQKQLLGE 725
Query: 500 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
+L+P ++ ++ + A K+TGMLLEMD E++ L+E +L+AKV EA+ V
Sbjct: 726 ALFPKIQVMQPELAGKITGMLLEMDNAELVGLIEDESSLRAKVDEALTV 774
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/312 (50%), Positives = 225/312 (72%), Gaps = 6/312 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+ FV F+N+ +A AI+++NG L+ D ++FVG F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F NV++KN + DE LK++F +YG S VMRD GKSK FGFV+F+
Sbjct: 180 A-ELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NGK + + +VG+AQKK+ER+ ELK FEQ +E + QG+ LYIK
Sbjct: 239 SHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PEEA++A+ EMNG+++
Sbjct: 299 NLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSPEEATKAMTEMNGRIL 357
Query: 301 VSKPLYVAVAQR 312
SKPL +A+AQ+
Sbjct: 358 GSKPLNIALAQK 369
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 169/289 (58%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI K + L +R+ K+ NVF+KNLD+S ++ L + F +G I
Sbjct: 70 TMNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G S+ + FV+F+N A +A+E +NG D +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ ++F N+YIKN GD +DDE+LKE+FS++G S KVMRD SG SKG GF
Sbjct: 185 K--------ANEFT--NVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F + E A +A+ EMNGK I + L+V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 283
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 26/214 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
+A K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 2 NIAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 238
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------LIKGKSIRLMWSQRDAYLRKSGIGNVF 101
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L E FS FG I S KVM D G S+G FV F A RA+ EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGA 160
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
++ L+V + +++R A LQ + ++ V +
Sbjct: 161 LLKDCRLFVGRFKNRKDREAELQNKANEFTNVYI 194
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 222/311 (71%), Gaps = 6/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+ FV F+N+ +A AI+++NG L+ D ++FVG F +Q+RE
Sbjct: 121 FGKILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F N+++KN + D+ L+++F +YG S VM D GKSK FGFV+F
Sbjct: 180 A-ELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFY 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NGK + + +VG+AQKK+ER+ ELK FEQ +E + QG+ LYIK
Sbjct: 239 SHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PEEA+RA+ EMNG+++
Sbjct: 299 NLDDTIDDEKLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATRAMTEMNGRIL 357
Query: 301 VSKPLYVAVAQ 311
SKPL +A+AQ
Sbjct: 358 GSKPLNIALAQ 368
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N I K + L +R+ K+ NVF+KNLD+S ++ L + F +G I
Sbjct: 70 TMNFDTIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G S+ + FV+F+N A +A+E +NG D +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQN 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ ++F N+YIKN GD +DD++L+E+FS++G S KVM D +G SKG GF
Sbjct: 185 K--------ANEFT--NIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F + E A +A+ EMNGK I + L+V AQ+K ER+A L+ F Q +
Sbjct: 235 VSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQK 283
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 210/525 (40%), Positives = 296/525 (56%), Gaps = 57/525 (10%)
Query: 72 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKT 129
+A D SKG+GFV FE +ESAQ AI+K+NGML+ K+V+VG F + R E
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETAR 60
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
+F NV++KN + E L+K+F ++G ITSA VM D DGKSK FGFV FEN +DA KAV
Sbjct: 61 RFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAV 120
Query: 190 EALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
++ + +R+ YV +AQKK+ER ELK ++EQ E + ++QG+NLY+KNL D+++
Sbjct: 121 TEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVN 180
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
D+ LK+ F +G ITS KVM D +G SKG GFV F P+EA++A+ EMNGKM+ +KPLYV
Sbjct: 181 DDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 240
Query: 308 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP--MYPPGPSG------LGQQFLYGQA 359
A+AQRKE+R+A+L +Q+ Q R ++ MP +Y PG G L Q +
Sbjct: 241 ALAQRKEDRKAQLASQYMQ-RLASIRMHNAGSMPGTVYTPGTGGFFVSSTLQNQRAF--M 297
Query: 360 PPAIIP---------------PQAGFGYQQQLV-----------PGMRPAGAPMPNFFVP 393
P A IP AGFG Q + G RPA +
Sbjct: 298 PTATIPGAQMRGTTPRWNTIGAAAGFGVQSPYMVQSGGYGQAGRGGTRPAASS-----AA 352
Query: 394 VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS 453
V + QQGQ G+ G Q L + +G + GR Q P G
Sbjct: 353 VAMRAQQGQYGPGQTGVTRGGPQAQRLTAGGAMVQNQGTRSQQMGGRQTQ--PGKPNQGQ 410
Query: 454 MLPVPVDMGAGIP-----RRDASVGQPM-PITALSTALANASPEQQRTLLGESLYPLVEQ 507
M+ G P ++++ V Q P+TA LA A P++Q+ +LGE +YPL+E+
Sbjct: 411 MMYSSYSAITGRPGQVQSQQNSIVIQGQEPLTA--HMLAQALPQEQKQMLGERIYPLIER 468
Query: 508 LERD-AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
+ + K+TGM+LEMD +E+L +LE+ E L++KV+EA VL S
Sbjct: 469 IYQGPDVGKITGMMLEMDNSELLMMLENEELLQSKVSEAASVLAS 513
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 135/241 (56%), Gaps = 22/241 (9%)
Query: 6 SAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHD 59
SA +A++ +N L K + + + R +R+ G N++IKN +D +AL
Sbjct: 22 SAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEK 81
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI--NDKQVFVGHFL 117
FS FG I S + D G+SKGFGFV FEN E A+ A+ +++ + +++++V
Sbjct: 82 LFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQ 141
Query: 118 RKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 164
+K ER + +K ++ N++VKNLD++ D+ LK+ F YG ITSA VM
Sbjct: 142 KKNER-SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVM 200
Query: 165 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 224
D +G+SK FGFV FE D+A KAV +NGK + YV AQ+K +R+ +L Q+ Q
Sbjct: 201 CDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQR 260
Query: 225 M 225
+
Sbjct: 261 L 261
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 201/265 (75%), Gaps = 3/265 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK+IF +YG S VM D GKSK FGFV+FE
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVM 267
D +DDE+L++ FS FGTITS KVM
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVM 326
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + V + +R+ K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE E+ +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAR 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
++ N+YIKN G+ +DDEKLKE+F ++G S +VM D SG SKG GFV
Sbjct: 187 AKEF----------TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F E+A RA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 237 SFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMK 284
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 312 RKEERRARLQAQFSQMRPVAM 332
++ER A + A+ + V +
Sbjct: 175 SRKEREAEMGARAKEFTNVYI 195
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 145/261 (55%), Positives = 198/261 (75%), Gaps = 2/261 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 104 KALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K+ER +
Sbjct: 164 SCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D TDED +++F ++G ITSA + RD GKS+ FGFVN+ + AA
Sbjct: 224 MKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAA 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LN +F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D +
Sbjct: 284 VAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDV 343
Query: 247 DDEKLKELFSEFGTITSCKVM 267
DDEKL+++F+ FGTITS KV+
Sbjct: 344 DDEKLRDMFTPFGTITSAKVI 364
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + + E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K ER +
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + DE +ELF + G ITS + RD G S+
Sbjct: 223 EMKANF-------------TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSR 269
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV + E A+ A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 129/290 (44%), Gaps = 75/290 (25%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIR--------KSGTGNIFIKNLDKSIDHKAL 57
+A A+ +N LN K ++ H P K+ NI++KN+D + +
Sbjct: 188 AANNAIKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDF 245
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F G+I S IA D G+S+GFGFV + E+A A+D LN + ++++VG
Sbjct: 246 RELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQ 305
Query: 118 RKQERET----------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVM- 164
+K ERE + ++K+ N+++KNL++ DE L+ +F +GTITSA V+
Sbjct: 306 KKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVIL 365
Query: 165 -----------------------------------------RDGD-----------GKSK 172
+ GD GKSK
Sbjct: 366 RDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSK 425
Query: 173 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 426 GFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 475
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%)
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ L+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 543 AEAMEV 548
EAM V
Sbjct: 713 DEAMSV 718
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 200/265 (75%), Gaps = 2/265 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF++FGNIL
Sbjct: 109 RALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNIL 168
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D SG S+G+GFV +E E+A AI +NGML+N+K+VFVGH + K++R +
Sbjct: 169 SCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEE 228
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D TTD++ +++F +YG ITSA + RD +GK + FGFVN+ +DA
Sbjct: 229 MKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDAN 288
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN F ++ YVG+AQKK ERE+EL+ Q+E +E K+ G+NLY+KNL D I
Sbjct: 289 KAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDI 348
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS 271
DDE+L+++F +G+ITS KVMRD +
Sbjct: 349 DDEELRKVFEAYGSITSAKVMRDTT 373
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 158/300 (52%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + +
Sbjct: 45 PANANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 104
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A+++LN LI K + +R+ KT N+F+KNLD + ++ L
Sbjct: 105 NDGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDT 160
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G S+ +GFV++E A+ A A++++NG ++++ +VG K
Sbjct: 161 FAAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKK 220
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R +E+K F N+Y+KN+ D++ +ELF ++G ITS + R
Sbjct: 221 DRMSKFEEMKANF-------------TNIYVKNIDTETTDDEFRELFEKYGEITSASLAR 267
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G +G GFV + E+A++A+ E+N S+ LYV AQ+K ER L+ Q+ R
Sbjct: 268 DQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQR 327
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 126/293 (43%), Gaps = 79/293 (26%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIR--------KSGTGNIFIKNLDKSIDHKAL 57
+A A+ +N LN K ++ H P K+ NI++KN+D
Sbjct: 193 AANAAIKSVNGMLLNEK--KVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETTDDEF 250
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F +G I S +A D G+ +GFGFV + E A A+D+LN + ++++VG
Sbjct: 251 RELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQ 310
Query: 118 RKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 164
+K ERE ++ ++ N++VKNL + DE+L+K+F YG+ITSA VM
Sbjct: 311 KKHEREE-ELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSAKVM 369
Query: 165 R-----------------DGD--------------------------------------G 169
R DG+ G
Sbjct: 370 RDTTPADQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEELTKKLDTVTIGGEKKVLG 429
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
KSK FGFV F N D+A KAV LN K + YV AQ+K R+ +L+ +
Sbjct: 430 KSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASIQ 482
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/323 (48%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A +ALD +NF + KSIR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS+
Sbjct: 254 VADAQKALDTMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFST 313
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ + +VFV F +++RE
Sbjct: 314 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRE 372
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+ +K K F NV++KN + D LK++F +YGT S VM D GKSK FGFV+F
Sbjct: 373 S-ELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFA 431
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A AVE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LYIK
Sbjct: 432 SHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIK 491
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL++ F+ FG+I+ KVM++ G SKG G + FS+ EEA +A+ EMNG+++
Sbjct: 492 NLDDTIDDEKLRKEFASFGSISRVKVMQE-EGRSKGFGLICFSSHEEAIKAMTEMNGRIL 550
Query: 301 VSKPLYVAVAQRKEERRARLQAQ 323
SKPL +A+AQR EER+ Q
Sbjct: 551 GSKPLNIALAQRNEERKTCFDNQ 573
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F + AQ A+D
Sbjct: 204 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDT 263
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ K+ NVF+KNLD+S ++ L + F +G I S
Sbjct: 264 MNFDVIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILS 319
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NG + +V + + + +RE ELK +
Sbjct: 320 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNK 378
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN GD +DD +LKE+FS++GT S KVM D SG SKG GFV
Sbjct: 379 ASEFT----------NVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFV 428
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F++ E A A+ EMNGK I + ++V AQ+K ER+A L+ F Q+R
Sbjct: 429 SFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLR 476
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 26/213 (12%)
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENAD 183
VA K + +++V +L T++ L K F G + S + RD +S + +VNF +
Sbjct: 196 VAAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVA 255
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLYI 239
DA KA++ +N FD +KG+ + M D + G+ N++I
Sbjct: 256 DAQKALDTMN---FD-----------------VIKGKSIRLMWSQRDAYLRKSGIGNVFI 295
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNG +
Sbjct: 296 KNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTL 354
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ + ++V+ + +++R + L+ + S+ V +
Sbjct: 355 LKNCRVFVSRFKSRKDRESELKNKASEFTNVYI 387
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 202/270 (74%), Gaps = 3/270 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 117 RALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A AI +NGML+N+K+VFVGH + K++R +
Sbjct: 177 SCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN++ TD++ +++F +YG ITSA + D + GKS+ FGFVN+ N +DA
Sbjct: 237 MKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDA 296
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
KAV+ LN F ++ YVG+AQKK ERE+EL+ Q+E A +E K+QG+NLY+KNL D
Sbjct: 297 YKAVDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADE 356
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISK 275
+DDE+L+++F +G ITS KVMRD + + K
Sbjct: 357 VDDEELRKIFEAYGAITSAKVMRDVTPLDK 386
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L ++F G + S V RD +S + +VN+ +A+D +A+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 121
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTGHG----NVFIKNLDGAIDNKAL 165
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D G SKG GFV + T E AS+A+ +NG ++ K ++V
Sbjct: 166 HDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHI 225
Query: 312 RKEERRAR---LQAQFSQM 327
K++R ++ ++A F+ +
Sbjct: 226 PKKDRMSKFEEMKANFTNI 244
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L A P QQ+ +LGE+LYP + + + A K+TGMLLEMD E+L L +AL+AKV E
Sbjct: 697 LNAAPPSQQKQILGEALYPKIHAQQPELAGKITGMLLEMDNHELLGLTTDDDALRAKVDE 756
Query: 545 AMEVLRSVAQQQA 557
AM V + Q+
Sbjct: 757 AMNVYEEYVKNQS 769
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 152/324 (46%), Positives = 215/324 (66%), Gaps = 4/324 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL+ +NF ++ + IRIM+S R PS + GN+F+KNL+ S++ KAL++ FS FGN
Sbjct: 70 AKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGN 129
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D +SKG+GFVQFE +E+A+ AID NG++ K+++VG F + ER A
Sbjct: 130 IVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQA 189
Query: 127 IKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+T F NVFVKN + E L+++F ++G I S V DGDGK FGFV FEN DD
Sbjct: 190 KRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDD 249
Query: 185 AAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
A KAV+ + DR+ YV + QKK ER EL +++ E +++G NLY+KNL
Sbjct: 250 AEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNL 309
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D+IDD+ L+ F E+G + S KVMR G SKG GFV F P+EA +A+ M GKM+ +
Sbjct: 310 DDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCT 369
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ 326
KPLYV++AQRKE+R+A + +Q+ Q
Sbjct: 370 KPLYVSMAQRKEDRKAFIASQYMQ 393
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 157/286 (54%), Gaps = 17/286 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L + FS+ G +LS ++ D + +S G+ +V FE E A+ A++
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +++ + + + R+ VA NVFVKNL+ S + L F +G I S
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAA----GNVFVKNLNGSVNSKALYNKFSVFGNIVS 132
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D KSK +GFV FE + A KA++ NG F+ + YVG+ Q +SER
Sbjct: 133 CKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERS------ 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
EQA K T + F N+++KN D +D EKL++LF++FG I SC V D G G GFV
Sbjct: 187 -EQA-KRTTNCF--TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFV 242
Query: 281 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQF 324
AF P++A +A+ +M + + LYV+ Q+K ER A L ++
Sbjct: 243 AFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKY 288
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 183
VA K +++V +L + L + F G + S V RD +S + +VNFE +
Sbjct: 9 VASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPE 68
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DA +A+E +N R + +Q++ + G N+++KNL
Sbjct: 69 DAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAG----------------NVFVKNLN 112
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
S++ + L FS FG I SCK+ D SKG GFV F T E A +A+ NG + K
Sbjct: 113 GSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGK 172
Query: 304 PLYVAVAQRKEER 316
+YV Q + ER
Sbjct: 173 RIYVGRFQSRSER 185
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFV 280
E A K+ + +LY+ +L +++ L E FS G + S +V RD + S G +V
Sbjct: 3 EMADKDVASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYV 62
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
F PE+A +AL MN ++ +P+ + +QR+
Sbjct: 63 NFERPEDAKQALETMNFDIVHGRPIRIMWSQRR 95
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 156/312 (50%), Positives = 221/312 (70%), Gaps = 6/312 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+++K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F+
Sbjct: 180 A-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIK
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 299 NLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRIL 357
Query: 301 VSKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 358 GSKPLSIALAQR 369
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 186 ASEFT----------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 182
VA K + +++V +L T++ L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 238
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
++ ++V + +++R A L+++ S+ V +
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/263 (53%), Positives = 196/263 (74%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 112 RALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNIL 171
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A +AI +NGML+N+K+VFVGH + K++R +
Sbjct: 172 SCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEE 231
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D TD++ + +F +YG ITSA + D +GKS+ FGFVN+ +DA
Sbjct: 232 MKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDAN 291
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN F + YVG+AQKK ERE+EL+ Q+E +E K+QG+NLY+KNL D I
Sbjct: 292 KAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEI 351
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DD++L+++F +G ITS KVMRD
Sbjct: 352 DDDELRKIFEPYGAITSAKVMRD 374
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 156/300 (52%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + +
Sbjct: 48 PSNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 107
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A+++LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 108 NDGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 163
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++++NG ++++ +VG K
Sbjct: 164 FAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKK 223
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R +E+K F N+Y+KN+ D++ + LF ++G ITS +
Sbjct: 224 DRMSKFEEMKANF-------------TNIYVKNIDPEATDDEFRALFEKYGDITSASLAH 270
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G S+G GFV + E+A++A+ E+N + LYV AQ+K ER L+ Q+ R
Sbjct: 271 DQEGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQR 330
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 35/184 (19%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNL ID L F +G I S K+ D E A + D+
Sbjct: 341 NLYVKNLADEIDDDELRKIFEPYGAITSAKVMRD-----------TIPADEVAASKKDE- 388
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT-- 159
K + E + + + KN + + D++ + + TIT
Sbjct: 389 ----------------EKSDEEKQSDDEEKKDEGDKNEEGEKKEGDVEDVIKKLDTITIG 432
Query: 160 -SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
++ GKSK FGFV F N D+A KAV LN K + YV AQ+K R+ +L+
Sbjct: 433 GEKKIL----GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLE 488
Query: 219 GQFE 222
+
Sbjct: 489 ASIQ 492
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/312 (50%), Positives = 221/312 (70%), Gaps = 6/312 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+++K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F+
Sbjct: 180 A-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIK
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 299 NLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRIL 357
Query: 301 VSKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 358 GSKPLSIALAQR 369
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 186 ASEFT----------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 182
VA K + +++V +L T++ L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 238
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
++ ++V + +++R A L+++ S+ V +
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 220/311 (70%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 119 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 178
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 179 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 237
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F NV++KN DE LK +F +YG S VM D GKSK FGFV+F++
Sbjct: 238 AELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 297
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKN
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILG 416
Query: 302 SKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 417 SKPLSIALAQR 427
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 244 ASEFT----------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 26/219 (11%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 177
K + VA K + +++V +L T++ L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QG 234
NF DA KA++ +N FD +KG+ + M D + G
Sbjct: 115 NFLQLADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSG 154
Query: 235 L-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
+ N++IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 294 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
EMNGK++ ++V + +++R A L+++ S+ V +
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 252
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 220/311 (70%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 119 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 178
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 179 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 237
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F N+++KN DE LK +F +YG S VM D GKSK FGFV+F++
Sbjct: 238 AELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 297
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKN
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILG 416
Query: 302 SKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 417 SKPLSIALAQR 427
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 244 ASEFT----------NIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 220/311 (70%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 119 LADAQKALDTMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 178
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 179 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 237
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F N+++KN DE LK +F +YG S VM D GKSK FGFV+F++
Sbjct: 238 AELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 297
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKN
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILG 416
Query: 302 SKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 417 SKPLSIALAQR 427
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 129 MNFDMIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 244 ASEFT----------NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 220/311 (70%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 118 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 177
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 178 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 236
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F N+++KN DE LK +F +YG S VM D GKSK FGFV+F++
Sbjct: 237 AELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 296
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKN
Sbjct: 297 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 356
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 357 LDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILG 415
Query: 302 SKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 416 SKPLSIALAQR 426
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 68 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 127
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 128 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 183
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 184 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 242
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 243 ASEFT----------NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 292
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 293 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 340
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 220/311 (70%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 119 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 178
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 179 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 237
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F N+++KN DE LK +F +YG S VM D GKSK FGFV+F++
Sbjct: 238 AELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 297
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKN
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILG 416
Query: 302 SKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 417 SKPLSIALAQR 427
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 244 ASEFT----------NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 220/311 (70%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 119 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 178
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 179 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 237
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F N+++KN DE LK +F +YG S VM D GKSK FGFV+F++
Sbjct: 238 AELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 297
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKN
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKN 357
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILG 416
Query: 302 SKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 417 SKPLSIALAQR 427
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 244 ASEFT----------NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 190/382 (49%), Positives = 238/382 (62%), Gaps = 37/382 (9%)
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVE +NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL DS
Sbjct: 2 AAAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 61
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI KPL
Sbjct: 62 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 121
Query: 306 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP-SGL-----------GQQ 353
Y+A+AQRKE+RRA LQA FSQ+R PGP SG Q
Sbjct: 122 YIALAQRKEDRRAHLQALFSQIR---------------APGPMSGFHHPPGGPMPGPPQH 166
Query: 354 FLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGA 410
GQ +++P Q G+G+Q Q +PGMRP P NF V P+ Q Q G R G RRGA
Sbjct: 167 MYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGA 225
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 468
VQQ Q +M H+ P G Y GRN D G + + I +
Sbjct: 226 TNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISHQ 284
Query: 469 DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 528
A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E+
Sbjct: 285 KAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEI 341
Query: 529 LHLLESPEALKAKVAEAMEVLR 550
LHL+ESPEALK+KV+EA++VLR
Sbjct: 342 LHLMESPEALKSKVSEALDVLR 363
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 82/140 (58%), Gaps = 14/140 (10%)
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDEST 143
A++K+NG+ + D ++VG +K ERE ++ KF N+++KNLD+S
Sbjct: 4 AVEKMNGISLGDDVLYVGRAQKKSEREE-ELRRKFEQERINRFEKSQGANLYLKNLDDSV 62
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
DE LK++F EYG +TS+ VM + G S+ FGFV + N ++A +A+ +NGK + Y
Sbjct: 63 DDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 122
Query: 204 VGKAQKKSEREQELKGQFEQ 223
+ AQ+K +R L+ F Q
Sbjct: 123 IALAQRKEDRRAHLQALFSQ 142
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 96
KS N+++KNLD S+D + L + FS +GN+ S K+ + G S+GFGFV + N E A
Sbjct: 47 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 106
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQER 122
A+ ++NG +I K +++ RK++R
Sbjct: 107 ALSEMNGKMIGRKPLYIALAQRKEDR 132
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 220/311 (70%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD +NF + + IR+M+S RD +R+SG GN+F+KNLD+S+D+K L++ FS
Sbjct: 61 LADAQRALDTMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSG 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+++ +A AI+++NG +IND+ VFV F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDRE 179
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F NV++KN + DE L+ +F YG S VM D GKSK FGFV+FE+
Sbjct: 180 AELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFES 239
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A +AVE +NGK + + +VG+AQKK ER+ ELK FEQ KE + + QG+ LY+KN
Sbjct: 240 HEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKN 299
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D++DDE+L++ FS FG+IT KVM++ G S+G G + FS+PEEA++AL EMNG+++
Sbjct: 300 LDDTVDDEQLRKEFSSFGSITRVKVMKEE-GYSRGFGLICFSSPEEAAKALTEMNGRVLG 358
Query: 302 SKPLYVAVAQR 312
SK L +A+AQR
Sbjct: 359 SKALSIALAQR 369
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 161/289 (55%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L L FS+ G +LS +I D + Q G+ +V F AQ A+D
Sbjct: 10 ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + L +R+ ++ NVFVKNLD S ++ L + F +G I
Sbjct: 70 TMNFDVIKGRPIR----LMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G SK + FV+F++ A A+E +NGK +DR +V + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRS 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ + N+YIKN GD +DDE+L+ +FS +G S KVM D SG SKG GF
Sbjct: 185 RASEFT----------NVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F + E A RA+ EMNGK + + ++V AQ+K ER+A L+ F QM+
Sbjct: 235 VSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMK 283
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 26/212 (12%)
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADD 184
A K + +++V +L T++ L + F G + S + RD + + +VNF D
Sbjct: 4 AAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLAD 63
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ---FEQAMKETVDKFQGL-NLYIK 240
A +A++ +N FD +KG+ + ++ + G+ N+++K
Sbjct: 64 AQRALDTMN---FD-----------------VIKGRPIRLMWSQRDACLRRSGIGNVFVK 103
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL S+D++ L E FS FG I S KVM D G SKG FV F + A+ A+ +MNGK+I
Sbjct: 104 NLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVI 162
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+P++VA + +++R A L+++ S+ V +
Sbjct: 163 NDRPVFVAPFKPRKDREAELRSRASEFTNVYI 194
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 217/311 (69%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 338 LADAQKALDTMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 397
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +Q+RE
Sbjct: 398 FGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDRE 456
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F NV++KN DE LK +F +YG S VM D GKSK FGFV+F++
Sbjct: 457 AELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 516
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NG+ + + +V +AQKK ER+ ELK FEQ E + Q + LY+KN
Sbjct: 517 HEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKN 576
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL++ FS FG+I+ KVM++ G SKG G + FS+PE+A +A+ EMNG+++
Sbjct: 577 LDDTIDDEKLRKEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDALKAMTEMNGRILG 635
Query: 302 SKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 636 SKPLSIALAQR 646
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 168/288 (58%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F + AQ A+D
Sbjct: 288 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDT 347
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 348 MNFDVIQGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILS 403
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 404 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSK 462
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 463 ASEFT----------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 512
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++VA AQ+K ER+A L+ F Q++
Sbjct: 513 SFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLK 560
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 109/214 (50%), Gaps = 20/214 (9%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 177
+ E V K + +++V +L T++ L + F G + S + RD +S + +V
Sbjct: 274 QDEEMDVEAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYV 333
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-N 236
NF + DA KA++ +N FD Q KS R + ++ + G+ N
Sbjct: 334 NFLHLADAQKALDTMN---FD-------VIQGKSIR-------LMWSQRDAYLRRSGIGN 376
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
++IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMN
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 435
Query: 297 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
GK++ ++V + +++R A L+++ S+ V
Sbjct: 436 GKLLQGCKVFVGRFKSRQDREAELRSKASEFTNV 469
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 154/318 (48%), Positives = 223/318 (70%), Gaps = 6/318 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +RKSG GN+FIKNLD+SID+K L++ FS+
Sbjct: 56 LADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSA 115
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+ FV F+N+ +A AI+++NG L+ D ++FVG F +++RE
Sbjct: 116 FGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDRE 174
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+ K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+F+
Sbjct: 175 A-EFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 233
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A +AVE +NGK + + +VG+AQKK+ER+ ELK FEQ E + +G LYIK
Sbjct: 234 SHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIK 293
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+ EEA++A+ EMNG+++
Sbjct: 294 NLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRIL 352
Query: 301 VSKPLYVAVAQRKEERRA 318
SKPL +A+AQ+ ER+
Sbjct: 353 GSKPLNIALAQKPXERKT 370
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 160/288 (55%), Gaps = 19/288 (6%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +S G+ +V F AQ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSITCHP----RSLGYAYVNFLQLADAQKALDT 65
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N LI K + L +R+ K+ NVF+KNLD S ++ L + F +G I S
Sbjct: 66 MNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 121
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G S+ + FV+F+N A +A+E +NG D +VG+ + + +RE E + +
Sbjct: 122 SKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNK 180
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN GD +DDE+LKE+FS++G S KVM D SG SKG GFV
Sbjct: 181 AHEFT----------NVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFV 230
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A RA+ EMNGK I + L+V AQ+K ER+A L+ F Q++
Sbjct: 231 SFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 278
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
R+ ++IKNLD++ID + L FSSFG+I K+ + G+SKGFG + F + E A
Sbjct: 282 FRRCRGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQE-EGRSKGFGLICFSSAEEA 340
Query: 95 QNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 127
A+ ++NG ++ K + + + ER+T I
Sbjct: 341 TKAMTEMNGRILGSKPLNIALAQKPXERKTFCI 373
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 227/344 (65%), Gaps = 8/344 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL LN T L K +RIM+ R+P RKSG GN+++KNLD SID L FS FG
Sbjct: 73 AYKALSNLNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGT 132
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ + G+SKG+GFVQF++++SA A L+ ++ +K+++V F++K ER T
Sbjct: 133 ILSCKVVEE-HGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTAT 191
Query: 127 I--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ KF N++VKNL + T + +F +G I SAV+M+D +GKS+ FGFV+FE+ +D
Sbjct: 192 SYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPED 251
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ALNG + + R +VG+AQ K+ER++ L+ +++ ++KF+ NLY+KNL
Sbjct: 252 AKKAVDALNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLAL 311
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
ID++KL+ELFS G I S KVMR +G S+G GFV FS+PEEA +AL +NG + K
Sbjct: 312 CIDNDKLQELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKS 371
Query: 305 LYVAVAQRKEERRARLQAQFS--QMRPVAMGPSV---PPRMPMY 343
LYVA+AQ K +R+ LQ FS Q +P + S PP P+Y
Sbjct: 372 LYVAMAQCKRDRQLALQTYFSVPQSQPPYLSDSSVVPPPISPVY 415
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 156/304 (51%), Gaps = 24/304 (7%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG---NILSCKIATDGSGQSKGFGFVQF 88
DP R S +++ +LD + L FSS G N+ C+ + +G+S +G+V F
Sbjct: 14 DPRPRLS----LYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSL--TGRSLCYGYVNF 67
Query: 89 ENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL 148
A A+ LN + K + + +R A K+ N++VKNLD S L
Sbjct: 68 YRPYDAYKALSNLNHTYLKGKLMRI----MWCQRNPCARKSGIGNLYVKNLDASIDSAGL 123
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+ +F ++GTI S V+ + GKSK +GFV F++ D A A AL+ +++ YV +
Sbjct: 124 QSLFSKFGTILSCKVVEE-HGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFV 182
Query: 209 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
KKSER + D+ + NLY+KNL + + +FS FG I S +M+
Sbjct: 183 KKSER----------TTATSYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQ 232
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D +G S+G GFV F +PE+A +A+ +NG + S+ L+V AQ K ER+ LQ ++ +
Sbjct: 233 DHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQAKAERKKILQHEYKDIF 292
Query: 329 PVAM 332
M
Sbjct: 293 NTHM 296
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/187 (76%), Positives = 170/187 (90%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARAL++LNFTP+N K IRIMYS+RDPS RKSGTGNIFIKNLDKSID+KAL+DTF +FGN
Sbjct: 89 AARALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGN 148
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKIATD SG+S+G+GFVQFE ESAQ+AIDKLNGMLINDK+VFVG F+RKQ+RE V+
Sbjct: 149 ILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVS 208
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KF+NV+VKNL ++ TD++LK++FG+YGTITSAVVMRD DGKS+CFGFVNFENAD AA
Sbjct: 209 SNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAA 268
Query: 187 KAVEALN 193
+AV+ LN
Sbjct: 269 QAVQELN 275
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 148/261 (56%), Gaps = 17/261 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +L +S+ L D FS G ++S ++ D S +S G+ +V + N+ A A++ L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N IN K + + + R+ + K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 97 NFTPINGKPIRIMY----SNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSC 152
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+ D G+S+ +GFV FE + A A++ LNG +D++ +VG +K +RE
Sbjct: 153 KIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDREN------ 206
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
+ + KF N+Y+KNL D++ D++LKE+F ++GTITS VMRD G S+ GFV
Sbjct: 207 ---VSSNI-KFS--NVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVN 260
Query: 282 FSTPEEASRALAEMNGKMIVS 302
F + A++A+ E+N ++ S
Sbjct: 261 FENADAAAQAVQELNDGVVSS 281
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 192
++V +L ES D L +F + G + S V RD + KS + +VN+ N DAA+A+E L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N + + + + + + G N++IKNL SID++ L
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTG----------------NIFIKNLDKSIDNKALY 140
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ F FG I SCK+ DPSG S+G GFV F E A A+ ++NG +I K ++V R
Sbjct: 141 DTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR 200
Query: 313 KEER 316
K++R
Sbjct: 201 KQDR 204
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
F +LY+ +L +S+ D +L ++FS+ G + S +V RD S S G +V ++ +A+R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N I KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/310 (48%), Positives = 216/310 (69%), Gaps = 4/310 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS
Sbjct: 187 LTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSG 246
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 247 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDRE 305
Query: 124 T--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ ++F N+++KN DE LK +F +YG S VM D GKSK FGFV+F++
Sbjct: 306 AELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDS 365
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + +QG+ LY+KN
Sbjct: 366 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKN 425
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDEKL+ FS FG+I KVM+ G SKG GF+ FS+ E+A++A+ EMNG+ +
Sbjct: 426 LDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICFSSLEDATKAMIEMNGRFLG 484
Query: 302 SKPLYVAVAQ 311
SKP+ +A+AQ
Sbjct: 485 SKPISIALAQ 494
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 137 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 196
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 197 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 252
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NG+ + +VG+ + + +RE EL+ +
Sbjct: 253 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSK 311
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D G SKG GFV
Sbjct: 312 ASEFT----------NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFV 361
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 362 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 409
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 149/311 (47%), Positives = 222/311 (71%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD +NF + +SIR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS
Sbjct: 61 VADAQRALDTMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSV 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ D G S+G+GFV F+N+ +A AI+++NG+L+ D ++FVG F +++RE
Sbjct: 121 FGKILSSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDRE 179
Query: 124 TVAIK--TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
++F N+++KN + DE LK+ F YG I S VM D GKSK FGFV+F+
Sbjct: 180 AELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDT 239
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A +AV+ +NG++ ++ +VG+AQKK+ER+ ELK FEQ +E + +G +Y+KN
Sbjct: 240 HEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKN 299
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ++ID+EKL++ FS FG+I KVM++ G S+G G + FS+PEEA+RA+AEMNG+++
Sbjct: 300 LDETIDEEKLRKAFSSFGSIIRVKVMQEE-GRSRGFGLICFSSPEEAARAMAEMNGRLLG 358
Query: 302 SKPLYVAVAQR 312
SKP+ +A+AQR
Sbjct: 359 SKPVNIALAQR 369
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D + S G+ +V F + AQ A+D
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + L +R+ K+ NVF+KNLD+S ++ L + F +G I
Sbjct: 70 TMNFDVIQGQSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G S+ +GFV+F+N A +A+E +NG D +VG + + +RE EL+
Sbjct: 126 SSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQN 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ + N+YIKN GD +DDEKLKE FS +G I S KVM D SG SKG GF
Sbjct: 185 KASEFT----------NIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F T E A RA+ +NG+ I + ++V AQ+K ER+A L+ F Q +
Sbjct: 235 VSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRK 283
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/266 (54%), Positives = 196/266 (73%), Gaps = 3/266 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+++F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMR 268
DSIDD+KL++ FS +G ITS K R
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 169/296 (57%), Gaps = 20/296 (6%)
Query: 38 SGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 92
SG+G ++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
A+ A+D +N ++ + + + +R+ K+ N+F+KNL++S ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+G I S V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
RE EL + A++ T N+Y+KNL +D++ L+ELFS+FG + S KVMRD SG
Sbjct: 179 REAELGAR---ALEFT-------NIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSG 228
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
S+ GFV F EEA +A+ MNGK + + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 219/311 (70%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +RKSG GN+FIKNL KSID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER- 122
FG ILS K+ +D +G S+G+ FV F+++ +A AI+ +NG L+ ++FVG F +++R
Sbjct: 121 FGKILSSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQ 179
Query: 123 -ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
E +F NV++KN + DE LK+IF +G I S VM D G+SK FGFV+F++
Sbjct: 180 AELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDS 239
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A +AVE +NGK + +VG+AQKK+ER+ ELK FEQ +E +F+G+ LYIKN
Sbjct: 240 HEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKN 299
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L DSIDDE+L+ FS FG+I+ KVM++ G SKG G + FS+PEEA++A+ EMNG+++
Sbjct: 300 LDDSIDDERLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATKAMVEMNGRILG 358
Query: 302 SKPLYVAVAQR 312
SK L +A+AQR
Sbjct: 359 SKSLNIALAQR 369
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 165/289 (57%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D Q S G+ +V F + AQ A+D
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + L +R+ K+ NVF+KNL +S ++ L + F +G I
Sbjct: 70 TMNFDMIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D D S+ + FV+F++ A +A+EA+NG +VG + + +R+ EL+
Sbjct: 126 SSKVMSD-DAGSRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQN 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ ++F N+YIKN GD +DDE+LKE+FS FG I S KVM D G SKG GF
Sbjct: 185 K--------ANEFT--NVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F + E A RA+ MNGK + +PL+V AQ+K ER+A L+ F QM+
Sbjct: 235 VSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMK 283
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
V K + +++V +L T++ L K F G + S + RD +S + +VNF +
Sbjct: 2 NVEAKYRQASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHL 61
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 238
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------MIKGKSIRLMWSQRDAYLRKSGIGNVF 101
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L E FS FG I S KVM D +G S+G FV F + A RA+ MNG
Sbjct: 102 IKNLHKSIDNKTLYEHFSAFGKILSSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGA 160
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
++ L+V + +++R+A LQ + ++ V +
Sbjct: 161 LLKGCRLFVGPFKNRKDRQAELQNKANEFTNVYI 194
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 219/312 (70%), Gaps = 6/312 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +RKSG GN+FIKNLD+SID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+ FV F+N+ +A AI+++NG L+ D ++FVG F +++RE
Sbjct: 121 FGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+ K F NV++KN + DE L ++F +YG S VM D GKSK FGFV+F+
Sbjct: 180 A-EFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A +AVE +NGK + + +VG+AQKK+ER+ ELK FEQ E + QG LYIK
Sbjct: 239 SHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+ EEA++A+ EMNG+++
Sbjct: 299 NLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRIL 357
Query: 301 VSKPLYVAVAQR 312
SKPL +A+AQ+
Sbjct: 358 GSKPLNIALAQK 369
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N LI K + L +R+ K+ NVF+KNLD S ++ L + F +G I
Sbjct: 70 TMNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G S+ + FV+F+N A +A+E +NG D +VG+ + + +RE E +
Sbjct: 126 SSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQN 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ + N+YIKN GD +DDE+L E+FS++G S KVM D SG SKG GF
Sbjct: 185 KAHEFT----------NVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F + E A RA+ EMNGK I + L+V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 283
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 146/266 (54%), Positives = 195/266 (73%), Gaps = 3/266 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMR 268
DSIDD+KL++ FS +G ITS K R
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 169/296 (57%), Gaps = 20/296 (6%)
Query: 38 SGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 92
SG+G ++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
A+ A+D +N ++ + + + +R+ K+ N+F+KNL++S ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+G I S V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
RE EL + A++ T N+Y+KNL +D++ L++LFS+FG + S KVMRD SG
Sbjct: 179 REAELGAR---ALEFT-------NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
S+ GFV F EEA +A+ MNGK + + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/317 (44%), Positives = 216/317 (68%), Gaps = 6/317 (1%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
L+ A RALD +NF L + +R+M+S RD +RKSG GN+FIKNLD+S+D KAL +
Sbjct: 196 FLRLADAQRALDTMNFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFER 255
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
FS+FG ILS K+ +D G S+G+ FV F+ + +A AI+ +NG + ++FVG F +Q
Sbjct: 256 FSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQ 314
Query: 121 ERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
RE ++++ F N+++KN D L+ +F EYG S VM D G+S+ FGFV
Sbjct: 315 AREA-ELRSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFV 373
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+FE+ + A +AVEALNG++ D + +VG+AQ+K+ER+ EL+ FEQ ++ + + QG L
Sbjct: 374 SFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKL 433
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
Y+KNL D++D+++L+ FS FG ++ K+MR+ G SKG G + FS+ +EA+RALAEMNG
Sbjct: 434 YVKNLDDAVDEDRLRREFSGFGAVSRVKIMRE-EGRSKGFGLICFSSADEAARALAEMNG 492
Query: 298 KMIVSKPLYVAVAQRKE 314
+++ SKPL +A+AQ +
Sbjct: 493 RVLGSKPLSIALAQSRR 509
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 161/289 (55%), Gaps = 22/289 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +LD + AL FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 149 SLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALDT 208
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ + + L +R+ K+ NVF+KNLD S D+ L + F +G I S
Sbjct: 209 MNFDVLRGRPL----RLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILS 264
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK-- 218
+ V+ D G S+ + FV+F+ A +A+E +NG + +VG+ Q + RE EL+
Sbjct: 265 SKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSR 323
Query: 219 -GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
G+F NLYIKN G +DD +L+ +FSE+G S KVM D SG S+G
Sbjct: 324 AGEFT-------------NLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGF 370
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV+F + E A RA+ +NG+ + +PL+V AQRK ER+A L+ F Q
Sbjct: 371 GFVSFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQ 419
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 216/311 (69%), Gaps = 6/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS
Sbjct: 61 LTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSG 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+++K F N+++KN DE LK +F +YG S VM D GKSK FGFV+F+
Sbjct: 180 A-ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + +QG+ LY+K
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL+ FS FG+I KVM+ G SKG GF+ FS+ E+A++A+ EMNG +
Sbjct: 299 NLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICFSSLEDATKAMIEMNGCFL 357
Query: 301 VSKPLYVAVAQ 311
SKP+ +A+AQ
Sbjct: 358 GSKPISIALAQ 368
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 126
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSK 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 186 ASEFT----------NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/316 (49%), Positives = 219/316 (69%), Gaps = 6/316 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+++K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F+
Sbjct: 180 A-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NG+ + + +V +AQKK ER+ ELK FEQ KE + Q + LY+K
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A +A+ EMNG+++
Sbjct: 299 NLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRIL 357
Query: 301 VSKPLYVAVAQRKEER 316
SKPL +A+AQ E R
Sbjct: 358 GSKPLSIALAQCSELR 373
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 167/290 (57%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D +S G+ +V F + AQ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I
Sbjct: 70 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRS 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ + N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GF
Sbjct: 185 KASEFT----------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 329
V+F + E A +A+ EMNG+ I + ++VA AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKK 284
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 26/213 (12%)
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENAD 183
V K + +++V +L T++ L + F G + S + RD +S + +VNF +
Sbjct: 3 VEAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLA 62
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLYI 239
DA KA++ +N FD +KG+ + M D + G+ N++I
Sbjct: 63 DAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVFI 102
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK+
Sbjct: 103 KNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKL 161
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ ++V + +++R A L+++ S+ V +
Sbjct: 162 LQGCKVFVGRFKSRKDREAELRSKASEFTNVYI 194
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 221/311 (71%), Gaps = 6/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + K+IR+M+S RD +RKSG GN+FIKNLDKSID+K+L++ FS+
Sbjct: 61 LADAQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+++ +A AI+++NG + D +VFVG F +++RE
Sbjct: 121 FGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F NV++KN + DE L+++F YG I S VM + GKS+ FGFV+F+
Sbjct: 180 A-ELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NGK+ + + +VG+AQKK ER+ ELK FEQ KE + QG LYIK
Sbjct: 239 SHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKL++ FS FG+I+ KVM++ G SKG G + FS+ E+A+RA+ MNG+++
Sbjct: 299 NLDENIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSSEDAARAMTVMNGRIL 357
Query: 301 VSKPLYVAVAQ 311
SKPL +A+AQ
Sbjct: 358 GSKPLNIALAQ 368
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++ K + L +R+ K+ NVF+KNLD+S ++ L + F +G I S
Sbjct: 71 MNFDVVKGKAIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKILS 126
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F++ A +A+E +NGK D + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNK 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN GD +DDE+L+E+FS +G I S KVM + G S+G GFV
Sbjct: 186 ASEFT----------NVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFV 235
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 329
+F + E A +A+ EMNGK + +P++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 26/214 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
VA K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 238
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------VVKGKAIRLMWSQRDAYLRKSGIGNVF 101
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L E FS FG I S KVM D G SKG FV F + A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGK 160
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ ++V + +++R A L+ + S+ V +
Sbjct: 161 FLKDCKVFVGRFKSRKDREAELRNKASEFTNVYI 194
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 142/262 (54%), Positives = 198/262 (75%), Gaps = 2/262 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+AQ AI +NGML+N+K+V+VGH + K++R++
Sbjct: 171 SCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+ TD++ +++F +G +TS+ + R+ DGKS+ FGFVNF + AA
Sbjct: 231 MKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAA 290
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K +E YVG+AQKK ERE+EL+ +E A E K+QG+NLYIKNL D +
Sbjct: 291 KAVEELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDV 350
Query: 247 DDEKLKELFSEFGTITSCKVMR 268
DD+KL+ +F+EFG ITS KVMR
Sbjct: 351 DDDKLRIMFAEFGPITSAKVMR 372
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 157/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G + S ++ D + +S G+ +V + + + A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 114 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 169
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + A +A++ +NG ++++ YVG K +R+ +
Sbjct: 170 LSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 229
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + D++ +ELF G +TS + R+ G S+
Sbjct: 230 EMKANF-------------TNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSR 276
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E+N K + + LYV AQ+K ER L+ + R
Sbjct: 277 GFGFVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKSYEAAR 329
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 537
I+AL ++ A P QQ+ +LGE ++P ++ + + A K+TGMLLEMD +E+++L+E A
Sbjct: 645 ISALQAQISGAPPAQQKQMLGEMIFPKIQAINGELAGKITGMLLEMDNSELINLIEDDAA 704
Query: 538 LKAKVAEAMEVLRSVAQQQ 556
LK+KV EA+ V + Q
Sbjct: 705 LKSKVDEALAVYDEYVKTQ 723
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
FGFV F N DDA KAV +N + + + YV AQ+K R+ +L+ +
Sbjct: 429 FGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQ 477
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 220/312 (70%), Gaps = 6/312 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A + LD +NF + KSIR+M+S RD +RKSG GN+FIKNLD+SID+K L++ FS+
Sbjct: 61 LADAQKVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+ FV F+++ +A AI+++NG L+ + ++FVG F ++ERE
Sbjct: 121 FGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKERE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F NV++KN + DE LK++F +YG I S VM D GKSK FGFV+F+
Sbjct: 180 A-ELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A +AVE +NGK + +VG+AQKK+ER+ ELK FEQ +E + +G+ LYIK
Sbjct: 239 THEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++ID+E+L+ FS FG+++ KVM + G SKG G + FS PEEA++A+AEMNG+++
Sbjct: 299 NLDETIDEEQLRRAFSSFGSMSRVKVM-EEEGRSKGFGLICFSCPEEATKAMAEMNGQVL 357
Query: 301 VSKPLYVAVAQR 312
SK + +A+AQR
Sbjct: 358 GSKAINIALAQR 369
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 166/294 (56%), Gaps = 16/294 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + L F+ G +LS +I D + +S G+ +V F N AQ +D
Sbjct: 10 ASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLD 69
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + L +R+ K+ NVF+KNLD S ++ L + F +G I
Sbjct: 70 TMNFDMIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKIL 125
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G S+ + FV+F++ A +A+E +NG + +VG + + ERE EL+
Sbjct: 126 SSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQN 184
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ ++F N+YIKN GD +DDE+LKE+FS++G I S KVM D SG SKG GF
Sbjct: 185 K--------ANEFT--NVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGF 234
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 333
V+F T E A RA+ MNGK I + ++V AQ+K ER+A L+ F Q++ G
Sbjct: 235 VSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFG 288
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 216/312 (69%), Gaps = 6/312 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD +NF + K IR+M+S RD +RKSG GN+ IKNLD+S+D+K L++ FS F
Sbjct: 174 ADAQKALDTMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGF 233
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILS K+ +D G SKG+ FV F+++ +A AI ++NG +I D+QV V F +++RE
Sbjct: 234 GRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDRE- 291
Query: 125 VAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
++T+ F NV+VKN E DE L+ +F +YG S VM D GKSK FGFV+F++
Sbjct: 292 AELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDS 351
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE +NGK + + +VG+AQKK ER+ ELK FE+ ++ + QG+ LYIKN
Sbjct: 352 HEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELKRDGARRCQGVKLYIKN 411
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D++DD++L+ FS FG+I+ KVM + G KG G V FS+PEEA++A+ +MNG+++
Sbjct: 412 LDDTVDDDRLRRAFSSFGSISRVKVM-EEEGQRKGFGLVCFSSPEEAAKAMTQMNGRVLG 470
Query: 302 SKPLYVAVAQRK 313
SKPL +A+A+R+
Sbjct: 471 SKPLNIALAKRQ 482
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 159/288 (55%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L L FS G +LS +I D + + G+ +V F AQ A+D
Sbjct: 123 SLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALDT 182
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N + K + L +R+ K+ NV +KNLD S ++ L + F +G I S
Sbjct: 183 MNFDAVEGKPIR----LMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILS 238
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F++ A A++ +NGK DR+ V + + +RE EL+ +
Sbjct: 239 SKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTR 297
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+Y+KN G+ +DDE+L+ +FS++G S KVM D SG SKG GFV
Sbjct: 298 TSEFT----------NVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFV 347
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNGK I + ++V AQ+KEER+A L+ F +++
Sbjct: 348 SFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELK 395
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 22/210 (10%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
+VA K + +++V +L T++ L + F G + S + RD + + +VNF
Sbjct: 114 SVAAKYRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRP 173
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
DA KA++ +N FD E GK + S+R+ L+ K V N+ IK
Sbjct: 174 ADAQKALDTMN---FDAVE---GKPIRLMWSQRDACLR-------KSGVG-----NVIIK 215
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL S+D++ L E FS FG I S KVM D G SKG FV F + A A+ EMNGK+I
Sbjct: 216 NLDRSVDNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVI 274
Query: 301 VSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
+ + VA + + +R A L+ + S+ V
Sbjct: 275 RDRQVLVAPFRSRRDREAELRTRTSEFTNV 304
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 195/487 (40%), Positives = 285/487 (58%), Gaps = 63/487 (12%)
Query: 101 LNGMLINDKQVFVGHFLRKQER-----ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
+NGML+NDK+VFVG FL + ER E V +F NV++KN + ++ L+ +F +Y
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKKMGERV---RQFTNVYIKNFGDKYDEKTLQVMFEKY 57
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-----WYVGKAQKK 210
G + S VMRD DG S+ FGFV +++ ++A AVEA+NG++ + YVG+AQKK
Sbjct: 58 GVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKK 117
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ER+QEL+GQ+EQ +E + +FQG+NLY+KNL D++ D++L+E F+ +GTITS K+M D
Sbjct: 118 QERQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDG 177
Query: 271 SGI----SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
S+G GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQR+E+R+A L AQ+ Q
Sbjct: 178 ECSTGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQ 237
Query: 327 MRPVAMGP--SVPPRMPMYP----PGPSGL-----GQQFLYGQA------PPAIIPPQAG 369
+MG + P +M P G SG G Q Y Q+ P PQ G
Sbjct: 238 RMTSSMGVRMATPNQMIGQPFQAAAGASGYFMPFQGAQRTYMQSQIIRTTPRWQHNPQGG 297
Query: 370 FGYQQQLVPGMRPAG--APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQM 427
F Q+ MR G AP P+ +Q G RG P M HQ
Sbjct: 298 F----QMAGDMRSVGPRAPTTPAIRPMATQ-------VGARG------VIHPQHQMMHQQ 340
Query: 428 PPRGHAYRYPLG-RN--MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 484
+ A++Y G RN M +P + + + + +P+ + L++A
Sbjct: 341 AMQQPAFKYTQGVRNPAMAGYPQSGQPQAQQQADQSLQQAVHVQGQ---EPLTSSMLASA 397
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
P++Q+ +LGE LYPL+EQ D A+K+TGMLLE+D +E+LH+LES E+LKAKV E
Sbjct: 398 ----QPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEE 453
Query: 545 AMEVLRS 551
A+ VL++
Sbjct: 454 AVAVLQA 460
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 29/244 (11%)
Query: 14 LNFTPLNNKSIRI-MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNI 67
+N LN+K + + + R I+K G N++IKN D K L F +G +
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVV 60
Query: 68 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ-----VFVGHFLRKQER 122
S + D G S+GFGFV +++ E AQ A++ +NG I ++VG +KQER
Sbjct: 61 KSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQER 120
Query: 123 ETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
+ ++ ++ N++VKNLD++ TD++L++ F YGTITSA +M DG+
Sbjct: 121 QQ-ELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGEC 179
Query: 170 ----KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
+S+ FGFV F + ++A KAV +NG+ + YV AQ++ +R+ L Q+ Q M
Sbjct: 180 STGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQRM 239
Query: 226 KETV 229
++
Sbjct: 240 TSSM 243
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/317 (47%), Positives = 209/317 (65%), Gaps = 7/317 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL+ LN+ + RIM+S+RDPS+RKSG GNIF+KNLDKSID K+L+DTF+ FG
Sbjct: 81 AEAALENLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHFGT 140
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+A D +G S+ +GFV +E++ESA+ AI+K+NGMLI K+V V FLRKQ+RET
Sbjct: 141 ILSCKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRETEE 200
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ T N++V+N +E L++ +YG ITS ++ D G+ F FVN++ A A
Sbjct: 201 VYT---NLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKGRR--FAFVNYKEASVAK 255
Query: 187 KAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
+ V LN K ++ V Q K +R+ LK QF DK NLYIKNL D
Sbjct: 256 EVVTTLNDLKLEEASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDDKRLTSNLYIKNLDD 315
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+ DD L ELF +FGTITS KVM D + S+G GFV FS P+EA++A+A M+ K++ KP
Sbjct: 316 TFDDASLGELFKQFGTITSSKVMLDANNNSRGFGFVCFSNPQEATKAIAAMHLKLVKGKP 375
Query: 305 LYVAVAQRKEERRARLQ 321
LYV +A+++++R R+Q
Sbjct: 376 LYVGLAEKRDQRLMRMQ 392
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
Q+ ++GE L+P++ + D A K+TGM+LE+D E+L LL+ + LKAK+ EA+ VL+
Sbjct: 596 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNQELLQLLDDNDQLKAKIDEAIRVLK 653
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 168/382 (43%), Positives = 234/382 (61%), Gaps = 64/382 (16%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NFT + K RIM+S RDPS+R+SG GNIF+KNL + ID+K L+DTFS F
Sbjct: 65 ADAERALDSMNFTDIKGKPCRIMWSQRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTFSLF 124
Query: 65 GNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
GNILSCK+ D +G SKG+G+V +E E+A +AIDKL+GMLI+ K+V VG F+R R+
Sbjct: 125 GNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMR---RD 181
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV-----------------MRD 166
T + + N+F+KN+ D+ L+ F E+G I SA V +D
Sbjct: 182 TRPDQEVYTNLFIKNMPYEWDDKRLEAEFAEFGEIVSASVKMGKRKKFAKKGKKAEAKKD 241
Query: 167 GDGK----------------------------------SKCFGFVNFENADDAAKAVEAL 192
D K S FGFVNF + AA AVEA+
Sbjct: 242 EDDKEDGAEDKPAEEEKPEEEEAKPAEEEAKPESTEPESLGFGFVNFATHEAAAAAVEAM 301
Query: 193 NGKKFD--------DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
N K + ++ +VG+AQKKSER+ EL+ ++E E + KFQG+NLY+KNL D
Sbjct: 302 NDKVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKYEAEKMERIAKFQGVNLYVKNLDD 361
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
++ D+ L++ F GTITS K+MRD + S+G GFV FSTPE+A+RA+ EM+GK++ K
Sbjct: 362 AVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIVAGK 421
Query: 304 PLYVAVAQRKEERRARLQAQFS 325
P+YV++AQR+E RRA+L+AQ +
Sbjct: 422 PIYVSLAQRREVRRAQLEAQHA 443
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 23/230 (10%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +L ++ L++ F++ G + S ++ D + +S G+ +V + A+ A+
Sbjct: 12 SASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAADAERAL 71
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D +N I K + +R+ ++ N+FVKNL E ++ L F +G I
Sbjct: 72 DSMNFTDIKGKPCRI----MWSQRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNI 127
Query: 159 TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQE 216
S V+ D + G SK +G+V++E + AA A++ L+G D +E VG ++ R +QE
Sbjct: 128 LSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMRRDTRPDQE 187
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
+ NL+IKN+ DD++L+ F+EFG I S V
Sbjct: 188 VY----------------TNLFIKNMPYEWDDKRLEAEFAEFGEIVSASV 221
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 61/80 (76%), Gaps = 6/80 (7%)
Query: 484 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
ALA+A+PE Q+ ++GE LYPL+ Q + D A K+TGMLLEMD +E+LHLLESPEAL AK+
Sbjct: 617 ALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPEALGAKIQ 676
Query: 544 EAMEVLRSVAQQQANNPADQ 563
EA++VL A+N AD+
Sbjct: 677 EALQVL------DAHNAADK 690
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L + L +IF G + S V RD +S + +VN+ A DA +A+++
Sbjct: 14 SLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAADAERALDS 73
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + + +Q+ + G N+++KNL + ID+++L
Sbjct: 74 MNFTDIKGKPCRIMWSQRDPSVRRSGVG----------------NIFVKNLHEGIDNKQL 117
Query: 252 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ FS FG I SCKV+ D +G+SKG G+V + T E A+ A+ +++G +I K + V V
Sbjct: 118 YDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVF 177
Query: 311 QRKEER 316
R++ R
Sbjct: 178 MRRDTR 183
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 288
+ F +LY+ +L +++ L E+F+ G + S +V RD + S G +V + +A
Sbjct: 8 NSFTSASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAADA 67
Query: 289 SRALAEMNGKMIVSKPLYVAVAQR 312
RAL MN I KP + +QR
Sbjct: 68 ERALDSMNFTDIKGKPCRIMWSQR 91
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/369 (42%), Positives = 224/369 (60%), Gaps = 51/369 (13%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LN++P+ + R+M+SHRDP++R+SG GN+++KNLD++ID+KAL+DTFS
Sbjct: 99 VADAERALDTLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSL 158
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A G+S+GFGFV FE+ ESA+ AI KLNGM I +K V+V F + ER
Sbjct: 159 FGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERN 218
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
K F NV++K++ S +E +K+ FG +G ITS V D G+ F FVN+ +
Sbjct: 219 DGTPKN-FTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFE 275
Query: 184 DAAKAVEALNGKKFDDRE------------------------------------------ 201
A AVE ++GK + E
Sbjct: 276 QARAAVEEMDGKDVRNEEEKAADRAQREREREERKAAREAAKAEGREDGDDVESDDDDEE 335
Query: 202 -----WYVGKAQKKSEREQELKGQFEQA-MKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
YV +AQ K+ER LK QF + + +F G+NLY+KNLG+ +DD +LK++F
Sbjct: 336 PETSHLYVARAQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMF 395
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FGT+TS KVM D G+S+G GFV FST EEA++A+ +M+ K+I KPLYV + +++E+
Sbjct: 396 EPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQ 455
Query: 316 RRARLQAQF 324
R RLQ ++
Sbjct: 456 RLERLQQRY 464
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 20/261 (7%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
+++ +L + L++ F++ G + S ++ D + +S G+ ++ F N A+ A+D
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN I + L R+ ++ NV+VKNLD + ++ L F +G I
Sbjct: 108 TLNYSPIKGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNIL 163
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V DGKS+ FGFV+FE+ + A A+ LNG + ++ YV +K +ER
Sbjct: 164 SCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPK 223
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
F N+YIK++ S ++EK+KE F FG ITS V DP G + F
Sbjct: 224 NF-------------TNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKG--RRFAF 268
Query: 280 VAFSTPEEASRALAEMNGKMI 300
V ++ E+A A+ EM+GK +
Sbjct: 269 VNYAEFEQARAAVEEMDGKDV 289
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 188
+F +++ +L T+ L ++F G + S V RD KS + ++NF N DA +A
Sbjct: 46 QFASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
++ LN R + + + + G N+Y+KNL +ID+
Sbjct: 106 LDTLNYSPIKGRPCRLMWSHRDPALRRSGAG----------------NVYVKNLDRNIDN 149
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV P G S+G GFV F + E A A+A++NG I K +YVA
Sbjct: 150 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Query: 309 VAQRKEER 316
++ ER
Sbjct: 210 PFKKTAER 217
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/369 (42%), Positives = 224/369 (60%), Gaps = 51/369 (13%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LN++P+ + R+M+SHRDP++R+SG GN+++KNLD++ID+KAL+DTFS
Sbjct: 99 VADAERALDTLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSL 158
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A G+S+GFGFV FE+ ESA+ AI KLNGM I +K V+V F + ER
Sbjct: 159 FGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERN 218
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
K F NV++K++ S +E +K+ FG +G ITS V D G+ F FVN+ +
Sbjct: 219 DGTPKN-FTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFE 275
Query: 184 DAAKAVEALNGKKFDDRE------------------------------------------ 201
A AVE ++GK + E
Sbjct: 276 QARAAVEEMDGKDVRNEEEKAADRAQREREREERKAAREAAKAEGREEGDDVESDDDDEE 335
Query: 202 -----WYVGKAQKKSEREQELKGQFEQA-MKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
YV +AQ K+ER LK QF + + +F G+NLY+KNLG+ +DD +LK++F
Sbjct: 336 PETSHLYVARAQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMF 395
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FGT+TS KVM D G+S+G GFV FST EEA++A+ +M+ K+I KPLYV + +++E+
Sbjct: 396 EPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQ 455
Query: 316 RRARLQAQF 324
R RLQ ++
Sbjct: 456 RLERLQQRY 464
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 20/261 (7%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
+++ +L + L++ F++ G + S ++ D + +S G+ ++ F N A+ A+D
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN I + L R+ ++ NV+VKNLD + ++ L F +G I
Sbjct: 108 TLNYSPIKGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNIL 163
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V DGKS+ FGFV+FE+ + A A+ LNG + ++ YV +K +ER
Sbjct: 164 SCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPK 223
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
F N+YIK++ S ++EK+KE F FG ITS V DP G + F
Sbjct: 224 NF-------------TNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKG--RRFAF 268
Query: 280 VAFSTPEEASRALAEMNGKMI 300
V ++ E+A A+ EM+GK +
Sbjct: 269 VNYAEFEQARAAVEEMDGKDV 289
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 188
+F +++ +L T+ L ++F G + S V RD KS + ++NF N DA +A
Sbjct: 46 QFASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
++ LN R + + + + G N+Y+KNL +ID+
Sbjct: 106 LDTLNYSPIKGRPCRLMWSHRDPALRRSGAG----------------NVYVKNLDRNIDN 149
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV P G S+G GFV F + E A A+A++NG I K +YVA
Sbjct: 150 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Query: 309 VAQRKEER 316
++ ER
Sbjct: 210 PFKKTAER 217
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/357 (45%), Positives = 228/357 (63%), Gaps = 7/357 (1%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRK-SGTGNIFIKNLDKSIDHKALHDTFSSF 64
SA+ A+ LN T L K++RIM+S RD S R+ +G GN+++KNLD SI L F+ F
Sbjct: 74 SASNAMARLNHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPF 133
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCK+ + +GQSKGFGFVQFE ++SA A L+G +++ K++FV F+ K ER
Sbjct: 134 GVILSCKVVEE-NGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNERVA 192
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+A F NV+VKNL E+ T++ L ++F +YGT++S VVMRDG G+S+ FGFVNF + ++
Sbjct: 193 MAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPEN 252
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV++L+G++ + +VGKA K+ ER + LK ++ + + NLY+KNL +
Sbjct: 253 AKKAVDSLHGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSN-MRWSNLYVKNLSE 311
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S++D L+E+F +G I S KVMR +G SKG GFV FS EE+ +A +NG + K
Sbjct: 312 SMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKL 371
Query: 305 LYVAVAQRKEERRARLQAQF-SQMRPVAMGPSVP-PRMPM--YPPGPSGLGQQFLYG 357
L V VA+RKE+R RLQ F +Q R P VP P P+ Y P G Q F G
Sbjct: 372 LVVRVAERKEDRLKRLQQYFHAQPRHYTQAPLVPSPAQPVLSYVPSSYGYLQPFHVG 428
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 159/286 (55%), Gaps = 19/286 (6%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + + L FS +LS + + +G+S + ++ F++ SA NA+
Sbjct: 21 ASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMA 80
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+LN + K + + + Q + +T F N++VKNLD S T L+++F +G I
Sbjct: 81 RLNHTDLKGKAMRI---MWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVIL 137
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ + +G+SK FGFV FE A A AL+G D ++ +V K K+ER
Sbjct: 138 SCKVVEE-NGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNER------ 190
Query: 220 QFEQAMKETVDKFQGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
AM +G N+Y+KNL ++I ++ L LFS++GT++S VMRD G S+G G
Sbjct: 191 ---VAMAGN----KGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFG 243
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
FV F PE A +A+ ++G+ + SK L+V A +++ERR L+ ++
Sbjct: 244 FVNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREMLKHKY 289
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAV 189
F +++V +L T++DL F + S + R+ GKS C+ ++NF++ A+ A+
Sbjct: 20 FASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAM 79
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
LN GKA + +++L + NLY+KNL SI
Sbjct: 80 ARLNHTDLK------GKAMRIMWSQRDLSYRRRTGFG---------NLYVKNLDISITSS 124
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
L+ +F+ FG I SCKV+ + +G SKG GFV F T + A A + ++G M+ K L+VA
Sbjct: 125 GLERMFNPFGVILSCKVV-EENGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAK 183
Query: 310 AQRKEERRA 318
K ER A
Sbjct: 184 FINKNERVA 192
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 210/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE LK+IF EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSRPPGVPVYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKL+E FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+M+
Sbjct: 308 NLDETIDDEKLREEFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVGEMNGRMV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 169/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DDEKLKE+FSE+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F +++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRFERLK--VKEKSRPPGVPVY 305
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 179/391 (45%), Positives = 236/391 (60%), Gaps = 28/391 (7%)
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
MRD +G S+CFGFVNFE ++ A AV+ LNGK D YV +AQKKSER+ ELK +FE
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 60
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
+ +K Q +NLY+KNL D I+DE L++LF FG + SCKVM D G SKG GFV+F+
Sbjct: 61 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 120
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA-MGPSVPPRMPM 342
T E+A+ A+ +MNGKM+ KPLYVAVAQRKEER+A L A F+++R +A M P++
Sbjct: 121 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTL------ 174
Query: 343 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
GP+ QF +G PA+ PP G+ Q P +PN +P Q Q GQ
Sbjct: 175 ---GPNIAPHQFNFGHGVPALFPPPPPAGFGFQ--PNF------VPNMMMPYNMQRQPGQ 223
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMPPR--GHAYRY-PLGRNMQDFPFDMGAGSMLPVPV 459
R G G P PHQM + +R+ P RN P + P+
Sbjct: 224 RSGPPHGGMPRHLHN------PHQMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPM 277
Query: 460 DMGAGIPRRDASVGQ-PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
+ VG+ P L T+LA+A+PEQQR +LG+ L+PLVEQL + A KVTG
Sbjct: 278 QPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTG 337
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
MLLE+D+TEVL+L+ESP+ L+ KVAEAM+VL
Sbjct: 338 MLLELDKTEVLNLVESPDTLRDKVAEAMKVL 368
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 87/160 (54%), Gaps = 14/160 (8%)
Query: 75 DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-- 132
D +G S+ FGFV FE E A+NA+ LNG I D ++V +K ER+ +K KF
Sbjct: 3 DANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQA-ELKAKFEHD 61
Query: 133 -----------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
N+++KNLD+ DE L+K+F +G + S VM D G+SK GFV+F
Sbjct: 62 KNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFAT 121
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+DA A+ +NGK + YV AQ+K ER+ L F
Sbjct: 122 VEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 161
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 24 IRIMYSH-RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG 82
++ + H ++ K T N+++KNLD I+ + L F FG + SCK+ D G+SKG
Sbjct: 54 LKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKG 113
Query: 83 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GFV F E A NAI K+NG ++ K ++V RK+ER+
Sbjct: 114 CGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKA 155
>gi|293335667|ref|NP_001167831.1| uncharacterized protein LOC100381531 [Zea mays]
gi|223944311|gb|ACN26239.1| unknown [Zea mays]
Length = 249
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 162/254 (63%), Positives = 190/254 (74%), Gaps = 11/254 (4%)
Query: 327 MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 386
MRPVAM PSV PRMPM+PP G+GQQ YGQ PPA I PQAGF +QQ ++PGMRP G P
Sbjct: 1 MRPVAMAPSVGPRMPMFPPSVPGVGQQLFYGQPPPAFINPQAGFAFQQPMMPGMRPGG-P 59
Query: 387 MPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMPHQ--MPPRGHAYRYPLGRNMQ 443
MPNF +P+V QGQQ QRP GRR G+G QQP+P+ Q P G YRY GR M
Sbjct: 60 MPNFMMPMVQQGQQPQRPAGRRAGSG---GMQQPMPMGSQQQIFPRGGRGYRYATGRGMP 116
Query: 444 DFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 503
D P G+++P P +MG G+ RDA V QP+PI AL+TALANASP+QQR +LGE+LYP
Sbjct: 117 D-PGMHNVGAVMPSPYEMG-GMAMRDAGVSQPVPIGALATALANASPDQQRLMLGENLYP 174
Query: 504 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA-- 561
LVEQLER+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLRS Q +N +
Sbjct: 175 LVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNASTE 234
Query: 562 DQLASLSLNENLVS 575
QLA+LSLN+ ++S
Sbjct: 235 QQLANLSLNDGVLS 248
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 163/389 (41%), Positives = 236/389 (60%), Gaps = 16/389 (4%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRK---SGTGNIFIKNLDKSIDHKALHDTFS 62
SA+ A+ LN + L K++RIM+S RD + R+ +G N+++KNLD SI L F
Sbjct: 74 SASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC 133
Query: 63 SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
FG+ILSCK+ + +GQSKGFGFVQF+ ++SA +A L+G ++ K++FV F+ K ER
Sbjct: 134 PFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDER 192
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+A NV+VKNL E+ TD+ L +F +YGT++S VVMRDG G+S+ FGFVNF N
Sbjct: 193 AAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNP 252
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KA+E+L G + ++ +VGKA KK ER + LK +F + + NLY+KNL
Sbjct: 253 ENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPN-MRWSNLYVKNL 311
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+S+++ +L+E+F +G I S KVM +G SKG GFV FS EE+ +A +NG ++
Sbjct: 312 SESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDG 371
Query: 303 KPLYVAVAQRKEERRARLQAQF-SQMRPVAMGPSVP-PRMPM--YPPGPSGLGQQFLYGQ 358
KP+ V VA+RKE+R RLQ F +Q R PS P P P+ Y G Q F G
Sbjct: 372 KPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAPSAPSPAQPVLSYVSSSYGCFQPFQVGT 431
Query: 359 APPAI---IPPQAGFGYQQQLVPGMRPAG 384
+ + +P +G Q + PAG
Sbjct: 432 SYYYMGNQVPQMSG----HQNITTYVPAG 456
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 158/288 (54%), Gaps = 19/288 (6%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
G++++ +L + K L D FS ++S + + +G+S + ++ F++ SA NA+
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 100 KLNGMLINDKQVFVGHFLRK--QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+LN + K + + R R T +T F N++VKNLD S T L+++F +G+
Sbjct: 81 RLNHSDLKGKAMRIMWSQRDLAYRRRT---RTGFANLYVKNLDSSITSSCLERMFCPFGS 137
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V+ + +G+SK FGFV F+ A A AL+G ++ +V K K ER
Sbjct: 138 ILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERA--- 193
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
AM D N+Y+KNL +++ D+ L LFS++GT++S VMRD G S+G
Sbjct: 194 ------AMAGNQD---STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGF 244
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325
GFV F PE A +A+ + G + SK L+V A +K+ERR L+ +FS
Sbjct: 245 GFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS 292
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAK 187
++F +++V +L T++DL F + S + R+ GKS C+ ++NF++ A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+ LN + + +Q+ + + F NLY+KNL SI
Sbjct: 78 AMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFA-------------NLYVKNLDSSIT 124
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
L+ +F FG+I SCKV+ + +G SKG GFV F T + A A + ++G M+ K L+V
Sbjct: 125 SSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 308 AVAQRKEERRA 318
A K+ER A
Sbjct: 184 AKFINKDERAA 194
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/258 (55%), Positives = 188/258 (72%), Gaps = 4/258 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 68 ADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 127
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-E 123
GNILSCKI D G S+G+GFV FE +E+A+ AI+K+NGML+N K+VFVG F+ ++ER E
Sbjct: 128 GNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLE 186
Query: 124 TVAIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF-VNFEN 181
+ K KFNNV+VKN E DE L+ +F YG I SA VM D V+FE+
Sbjct: 187 VLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFED 246
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVEALNG + YVG+AQKK ER+ ELK +FE+ E ++++QG+NLY+KN
Sbjct: 247 PEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKN 306
Query: 242 LGDSIDDEKLKELFSEFG 259
L D+IDDE+L++ F++FG
Sbjct: 307 LDDNIDDERLRKEFAQFG 324
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 153/289 (52%), Gaps = 17/289 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L + FS+ G +L ++ D + +S G+ +V F+ A+ A+D
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I + + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 77 MNFDTIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
++ D G S+ +GFV+FE + A A+E +NG + ++ +VG+ + ER +
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLE----- 186
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF- 279
+ + + KF N+Y+KN + I+DE L+++F +G I S KVM D
Sbjct: 187 ---VLGDKMRKFN--NVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGF 241
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V+F PE A +A+ +NG K LYV AQ+K ER+A L+ +F ++R
Sbjct: 242 VSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIR 290
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 35/41 (85%)
Query: 511 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
D A K+TGMLLE+D +E+LH+LES E+L+AKV EA+ VL++
Sbjct: 408 DLAGKITGMLLEIDNSELLHMLESQESLEAKVKEAVAVLQA 448
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 191/570 (33%), Positives = 294/570 (51%), Gaps = 81/570 (14%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L I L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I + + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL-- 217
S V +D G SK +GFV+FE + A K+++ +NG + ++ YVGK + ERE+EL
Sbjct: 127 SCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGE 186
Query: 218 ---------------KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
K +FEQ E ++++QG+NLY+KNL D+IDDE+L++ F+ FGTIT
Sbjct: 187 KAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTIT 246
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S KVM + G SKG GFV FS PEEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +
Sbjct: 247 SAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLAS 305
Query: 323 QFSQ-MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP----PQAGFGYQQQLV 377
Q+ Q M V M +GQ F G A +P PQ +G Q
Sbjct: 306 QYMQRMANVRM---------------QQMGQIFQPGNAGSYFVPTLPQPQRFYGPAQMAQ 350
Query: 378 PGMRPAGAPMPNFFVPVVSQGQQG--------------------------QRP-GGRRGA 410
P PN P G G RP G++
Sbjct: 351 IRATPRWPAQPNQVRPNAQTGSSGFAMQAPFRAAPRAPAAQAGAMRNTLSARPITGQQAV 410
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 470
G + + + P+ Y NM++ P M + PV ++
Sbjct: 411 GGANMQSRSMAGPAVGVSPQSRPSNYKYTANMRNPPQTMPMPAQAPV---------QQAV 461
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 530
+ P+TA + LA A P++Q+ +LGE L+PL++ + K+TGMLLE+D +E+LH
Sbjct: 462 HIQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPALTGKITGMLLEIDNSELLH 519
Query: 531 LLESPEALKAKVAEAMEVLRSVAQQQANNP 560
+LE E+LKAKV EA+ VL++ +QAN P
Sbjct: 520 MLEHSESLKAKVEEAVAVLQAHQAKQANQP 549
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 164/250 (65%), Gaps = 30/250 (12%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDK+ID+KA++DTFS+F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE- 123
GNILSCK+A D SG SKG+GFV FE +E+A +IDK+NGML+N K+V+VG F+ ++ERE
Sbjct: 123 GNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREK 182
Query: 124 ---------------TVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEY 155
+K KF N++VKNLD++ DE L+K F +
Sbjct: 183 ELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPF 242
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
GTITSA VM + +G+SK FGFV F ++A KAV +NG+ + YV AQ+K +R+
Sbjct: 243 GTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKA 301
Query: 216 ELKGQFEQAM 225
L Q+ Q M
Sbjct: 302 HLASQYMQRM 311
>gi|414588972|tpg|DAA39543.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 246
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/253 (64%), Positives = 189/253 (74%), Gaps = 12/253 (4%)
Query: 327 MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 386
MRPVAM PSV PRMPM+PPG G+GQQ YGQ PPA I PQAGF +QQ L+PGMRP G P
Sbjct: 1 MRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQAGFAFQQPLMPGMRPGG-P 59
Query: 387 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ--MPPRGHAYRYPLGRNMQD 444
MPNF +P+V QGQQ QRP GRR G QQP+P+ Q P G YRYP GR M D
Sbjct: 60 MPNFMMPMVQQGQQPQRPAGRRAGG----MQQPMPMGGQQQVFPRGGRGYRYPTGRGMPD 115
Query: 445 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 504
P G+++P +MG G+P R+A+ QP+PI AL+TALANA P+QQR +LGE+LYPL
Sbjct: 116 -PGMHSVGAVMPPSYEMG-GMPMREAAP-QPVPIGALATALANAPPDQQRLMLGENLYPL 172
Query: 505 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA--D 562
VEQLER+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLRS Q +N +
Sbjct: 173 VEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQ 232
Query: 563 QLASLSLNENLVS 575
QLA+LSLN+ +VS
Sbjct: 233 QLANLSLNDGVVS 245
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/262 (53%), Positives = 191/262 (72%), Gaps = 4/262 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S A A++VLN+ L K +RIM+S RDPS R SG GN+F+KNLD+SID+K L D FS+F
Sbjct: 66 SQAKTAMEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAF 125
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G +LSCK+A D SG SKG+GFVQF + S A + NG LI ++ + V F+ + + +
Sbjct: 126 GKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDK 185
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ F NV+VKNL E+ TD DLK++FGE+G ITSAVVM+DG+GKS+ FGFVNFE A+
Sbjct: 186 SRV---FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEA 242
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE-QAMKETVDKFQGLNLYIKNLG 243
A A+E +NG D++E +VG+AQ+K+ R ++LK +FE + + + +G+NLY+KNL
Sbjct: 243 AVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLD 302
Query: 244 DSIDDEKLKELFSEFGTITSCK 265
DS+D+ KL+ELFSEFGTITSCK
Sbjct: 303 DSVDNTKLEELFSEFGTITSCK 324
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 149/299 (49%), Gaps = 22/299 (7%)
Query: 47 NLDKSIDHKALHDTFSSFG-NILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGM 104
+LD S++ L+ FS F +I S K+ D +G S G+G+V F + A+ A++ LN
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 105 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 164
+ K + + ER+ + NVFVKNLDES ++ L +F +G + S V
Sbjct: 79 KLKGKPMRIMF----SERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVA 134
Query: 165 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 224
RD G SK +GFV F + A NG ++ +V + GQ++++
Sbjct: 135 RDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSR--------GQWDKS 186
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 284
T N+Y+KNL ++ D LK LF EFG ITS VM+D G S+ GFV F
Sbjct: 187 RVFT-------NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEK 239
Query: 285 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
E A A+ +MNG ++ K L+V AQRK R L+A+F ++ + M +Y
Sbjct: 240 AEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKF-ELEKIIRDMKTRKGMNLY 297
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
RD RK N+++KNLD S+D+ L + FS FG I SCK A +
Sbjct: 286 RDMKTRKGM--NLYVKNLDDSVDNTKLEELFSEFGTITSCKYACN 328
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 140/294 (47%), Positives = 198/294 (67%), Gaps = 6/294 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+++ N + LN K IR+M+ RD RKSG GN+F+KNL SID+ LHD F +GN
Sbjct: 69 AIRAIELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGN 128
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS KIA G+SKGFG++QF+++ESA AI K+NG + DKQ++VG F+RK ER
Sbjct: 129 ILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPD 188
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ KF N++VKNLD T++ L + F +G I S + +D +G+SK FGFVN+++ DDA
Sbjct: 189 LDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDAR 248
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF-EQAMKETVDKFQGLNLYIKNLGDS 245
+A+EA++G +F + YV +AQKK EREQ L F E+ +K G N+Y+KN+ S
Sbjct: 249 RAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKH-----MGSNIYVKNIDTS 303
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
+ DE+L++ FS G + S KVMRD G SKG GFV FST EA ++++ NG++
Sbjct: 304 VGDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 158/296 (53%), Gaps = 19/296 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +L + L+ FS F ++S ++ D +G+S +G+V + + A AI+
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N +N K + V R+ A K+ NVFVKNL S + L +F +YG I S+
Sbjct: 77 NHSSLNGKVIRVMWL----SRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSS 132
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ-ELKGQ 220
+ R DGKSK FG++ F++ + A A++ +NG D++ YVGK +KSER +L +
Sbjct: 133 KIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAK 192
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
F NLY+KNL + ++ L E FS FG I S + +D +G SKG GFV
Sbjct: 193 FT-------------NLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFV 239
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 336
+ +P++A RA+ M+G SK LYVA AQ+K ER L F + MG ++
Sbjct: 240 NYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNI 295
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 217/311 (69%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A +ALD +NF + KSIR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS
Sbjct: 61 LDDAQKALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSP 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+GFV ++++ +A AI+++NG L+ D VFV F +++RE
Sbjct: 121 FGKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDRE 179
Query: 124 T-VAIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ KT +F NV++KNL ++ DE LK IF +YG S VM+D +GKSK FGFV+F N
Sbjct: 180 AELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYN 239
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AVE +NG+ + + +VG+AQKK ER+ ELK +FEQ KE + Q LYIKN
Sbjct: 240 HEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYIKN 299
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ++IDDE L+ FS FG+I KVM++ +G SKG G + F +PE A++A+AEMNG+++
Sbjct: 300 LDETIDDETLRREFSSFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILG 358
Query: 302 SKPLYVAVAQR 312
SK L +A+ Q+
Sbjct: 359 SKALNIALGQK 369
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 16/294 (5%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
K ++++ +L + + L F++ G +LS +I D S +S G+ +V F + AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQ 65
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
A+D +N LI K + L +R+ K+ NVF+KNLD+S ++ L + F +
Sbjct: 66 KALDTMNFDLIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S+ VM D +G S+ +GFV++++ A +A+E +NGK D +V + + + +RE
Sbjct: 122 GKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREA 180
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
EL+ + + N+YIKNLGD++DDE LK +FS++G S KVM+D +G SK
Sbjct: 181 ELRSKTSEFT----------NVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSK 230
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 329
G GFV+F E A A+ EMNG+ I + ++V AQ+K ER+A L+ +F QM+
Sbjct: 231 GFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKK 284
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 20/202 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L E T++ L + F G + S + RD +S + +VNF DDA KA++
Sbjct: 11 SLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKALDT 70
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 250
+N FD Q KS R + ++ + G+ N++IKNL SID++
Sbjct: 71 MN---FD-------LIQGKSIR-------LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKT 113
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L E FS FG I S KVM D G S+G GFV + A RA+ EMNGK++ ++V
Sbjct: 114 LYEHFSPFGKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRF 172
Query: 311 QRKEERRARLQAQFSQMRPVAM 332
+ +++R A L+++ S+ V +
Sbjct: 173 KSRKDREAELRSKTSEFTNVYI 194
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 147/311 (47%), Positives = 216/311 (69%), Gaps = 4/311 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A +AL +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS
Sbjct: 61 VNDAQKALVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSP 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG I+S K+ TDG G SKG+GFV ++++ +A AI+++NG L+ + +FV F +++RE
Sbjct: 121 FGTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDRE 179
Query: 124 TVAIK--TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
T+F NV++KN + DE L+++F +YG S VM+D GKSK FGFV+F++
Sbjct: 180 AELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDS 239
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + Q LYIKN
Sbjct: 240 HEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKN 299
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+IDDE L++ FS FG+I KVM++ +G SKG G + F +PE A++A+AEMNG+++
Sbjct: 300 LDDTIDDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILG 358
Query: 302 SKPLYVAVAQR 312
SKPL +A+ Q+
Sbjct: 359 SKPLNIALGQK 369
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 172/295 (58%), Gaps = 18/295 (6%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
K ++++ +L + + L FS+ G +LS +I D S +S G+ +V F AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
A+ +N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +
Sbjct: 66 KALVTMNFDVIKGKSIR----LMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
GTI S+ VM DG+G SK +GFV++++ A +A+E +NGK + +V + + + +RE
Sbjct: 122 GTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREA 180
Query: 216 ELKGQFEQAMKETVDK-FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 274
EL+ DK + N+YIKN GD +DDEKL+E+FS++G S KVM+D +G S
Sbjct: 181 ELR-----------DKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKS 229
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 329
KG GFV+F + E A A+ +MNG+ I + ++V AQ+K ER+A L+ F QM+
Sbjct: 230 KGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKK 284
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/256 (53%), Positives = 188/256 (73%), Gaps = 4/256 (1%)
Query: 11 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
++VLN+ L K +RIM+S RDPS R SG GN+F+KNLD+SID+K L D FS+FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 130
K+A D SG SKG+GFVQF + S A + NG LI ++ + V F+ + + + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRV--- 117
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
F NV+VKNL E+ TD DLK++FGE+G ITSAVVM+DG+GKS+ FGFVNFE A+ A A+E
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFE-QAMKETVDKFQGLNLYIKNLGDSIDDE 249
+NG D++E +VG+AQ+K+ R ++LK +FE + + + +G+NLY+KNL DS+D+
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 250 KLKELFSEFGTITSCK 265
KL+ELFSEFGTITSCK
Sbjct: 238 KLEELFSEFGTITSCK 253
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 107/211 (50%), Gaps = 16/211 (7%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
NVFVKNLDES ++ L +F +G + S V RD G SK +GFV F + A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
NG ++ +V + GQ++++ T N+Y+KNL ++ D LK
Sbjct: 92 NGTLIRNQHIHVCPFVSR--------GQWDKSRVFT-------NVYVKNLVETATDADLK 136
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
LF EFG ITS VM+D G S+ GFV F E A A+ +MNG ++ K L+V AQR
Sbjct: 137 RLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 313 KEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
K R L+A+F ++ + M +Y
Sbjct: 197 KTNRTEDLKAKF-ELEKIIRDMKTRKGMNLY 226
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
RD RK N+++KNLD S+D+ L + FS FG I SCK A +
Sbjct: 215 RDMKTRKGM--NLYVKNLDDSVDNTKLEELFSEFGTITSCKYACN 257
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 204/573 (35%), Positives = 297/573 (51%), Gaps = 78/573 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L + FS+ G +LS ++ D + + S G+ +V F+ A+ A+D
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 101 LNGMLINDK---------------------------QVFVGHF--LRKQERETVAIKTKF 131
+N ++ K +VFVG F ++ RE +F
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQF 152
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
NV+VKN + E L+K+F ++G ITS VM +GKSK FGFV F N ++A AV+A
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQA 211
Query: 192 LNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
L+ + D + +V +AQKKSER ELK + EQ E + K+QG+NLY+KNL +++DD+
Sbjct: 212 LHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 271
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
LK+ F +G ITS KVM D +G SKG GFV F PEEA+ A+ EMN KM+ SKPLYVA+
Sbjct: 272 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 331
Query: 310 AQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQA 368
AQRKE+RRA+L +Q+ Q + + M +VP MY P G G Y A P + Q
Sbjct: 332 AQRKEDRRAQLASQYMQRLASMRMHGNVPG-AAMYNPTQPGPG----YYVANP--MQQQR 384
Query: 369 GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP 428
F QQ+V RP G PV +Q Q PG + Q QQ P + P
Sbjct: 385 NFAGGQQMV---RPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGGP----RGP 437
Query: 429 PRGHAYRYPLGRNMQDFPFDMGAGSML-----------------------PVPVDMGAGI 465
P+ + G MQ P G P P
Sbjct: 438 PQQYNQVAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQR 497
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL---ERDAAAKVTGMLLE 522
P + +G P+T S LA A+P++Q+ LLGE +Y L+E+L +D A K+TGM+LE
Sbjct: 498 P-QGIVIGGQEPLT--SAMLAAAAPQEQKQLLGERIYALIEKLYPGHKD-AGKITGMMLE 553
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
+D +E++ +L+ E ++KV EA VL S +Q
Sbjct: 554 IDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ 586
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 141/269 (52%), Gaps = 50/269 (18%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI------------ 52
+ A RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNR 143
Query: 53 ------------------DH---KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK 91
DH + L F+ FGNI SC++ T G+SKGFGFV F N
Sbjct: 144 ELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANP 202
Query: 92 ESAQNAIDKLNGMLI--NDKQVFVGHFLRKQERETVAIKTKFN-------------NVFV 136
E A+ A+ L+ I D ++ V +K ER +K K N++V
Sbjct: 203 EEAETAVQALHDSTIEGTDLKLHVCRAQKKSERH-AELKKKHEQHKAERMQKYQGVNLYV 261
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLDE+ D+ LKK F YG ITSA VM D +G+SK FGFV FE ++A AV +N K
Sbjct: 262 KNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKM 321
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAM 225
+ YV AQ+K +R +L Q+ Q +
Sbjct: 322 VCSKPLYVAIAQRKEDRRAQLASQYMQRL 350
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 209/314 (66%), Gaps = 7/314 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE LKK+F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + VG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEAS+A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSLFGSISRAKVMME-VGQGKGFGVVCFSSFEEASKAVNEMNGRVV 366
Query: 301 VSKPLYVAVAQRKE 314
SK L+V + Q +
Sbjct: 367 GSKTLHVTLGQARH 380
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDHLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD IDDEKLK+LFSE+G S KV+RD +G SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ E++GK I K L V AQ+K ER A L+ +F +++ + PP +P+Y
Sbjct: 248 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLK--LKDKTRPPGVPIY 305
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 209/314 (66%), Gaps = 7/314 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIK+LDKSID++ L FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKNL ++ DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A K+V L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG V FS+ EEA++A+ EMNG ++
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMME-MGQGKGFAVVCFSSFEEATKAVDEMNGPVL 366
Query: 301 VSKPLYVAVAQRKE 314
SKPL V + Q +
Sbjct: 367 GSKPLSVTLGQARH 380
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +L + L+ F G + +I D S G+G+V F A+ A++ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+K+LD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KNLGD++DDEKLKELFSE+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +++ +++GK I K LYV AQ+K ER A L+ +F +++ S PP +P+Y
Sbjct: 248 THEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELRRRFERLK--LKEKSRPPGVPIY 305
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 214/312 (68%), Gaps = 6/312 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A +AL+ +NF + KSIR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS
Sbjct: 61 VGDAQKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSP 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG I+S K+ TD G SKG+GFV ++++ +A AI+++NG L+ D +FV F +++RE
Sbjct: 121 FGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F NV++KN + DE L+ +F +YG S VM+D GKSK FGFV+F+
Sbjct: 180 A-ELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + Q LYIK
Sbjct: 239 SHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDE L++ FS FG+I KVM++ +G SKG G + F +PE A++A+AEMNG+++
Sbjct: 299 NLDDTIDDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRIL 357
Query: 301 VSKPLYVAVAQR 312
SKPL +A+ Q+
Sbjct: 358 GSKPLNIALGQK 369
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 16/294 (5%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
K ++++ +L + + L F++ G +LS +I D S +S G+G+V F AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
A++ +N LI K + L +R+ K+ NVF+KNLD+S ++ L + F +
Sbjct: 66 KALETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S+ VM D +G SK +GFV++++ A +A+E +NGK D +V + + + +RE
Sbjct: 122 GKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
EL+ E+ + T N+YIKN GD +DDE L+ +FS++G S KVM+D SG SK
Sbjct: 181 ELR---EKPAEFT-------NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK 230
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 329
GFV+F + + A A+ +MNG+ I + ++V AQ+K ER+A L+ F QM+
Sbjct: 231 RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKK 284
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 155/181 (85%)
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGKKFDD+EWYVG+AQKKS RE ELK +FE+ ++E DK+Q NLY+KNL DS+
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSV 60
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ELF+E+GTITSCKVMRD +G+S+GSGFVAF + E+ASRALAEMN KM+ SKPLY
Sbjct: 61 DDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 120
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+R+ARLQAQFSQ+RPV + PSV PRMPM+PPG G+GQQ YGQ PPA I
Sbjct: 121 VALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINT 180
Query: 367 Q 367
Q
Sbjct: 181 Q 181
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 86/140 (61%), Gaps = 14/140 (10%)
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF-------------NNVFVKNLDEST 143
A+ +LNG +DK+ +VG +K RE + +K KF N+++KNLD+S
Sbjct: 2 AVQELNGKKFDDKEWYVGRAQKKSGRE-MELKEKFEKNLQEAADKYQNTNLYLKNLDDSV 60
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
D+ L+++F EYGTITS VMRD +G S+ GFV F++A+DA++A+ +N K + Y
Sbjct: 61 DDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 120
Query: 204 VGKAQKKSEREQELKGQFEQ 223
V AQ+K +R+ L+ QF Q
Sbjct: 121 VALAQRKEDRKARLQAQFSQ 140
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD S+D L + F+ +G I SCK+ D +G S+G GFV F++ E A A+ ++
Sbjct: 50 NLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEM 109
Query: 102 NGMLINDKQVFVGHFLRKQERET 124
N ++ K ++V RK++R+
Sbjct: 110 NSKMVGSKPLYVALAQRKEDRKA 132
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 142/309 (45%), Positives = 202/309 (65%), Gaps = 6/309 (1%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
++ + A+RAL +LN T L K +RIM+ RDP RK+G N+F+KNLD SI L
Sbjct: 65 LYSHAQASRALGLLNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESI 124
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
FS +G ILSCK+A + +G+SKGFGFVQFE+++SA A L+ ++ K++ V F++K
Sbjct: 125 FSKYGTILSCKVAGE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKT 183
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
ER A F N++VKNLDE+ T++ LK +F G ++S +M D +GKSK FGFVNF+
Sbjct: 184 ERTAAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFK 243
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ DDA KAV+ +NG + +VGKAQ+KSER LK +++ + +K + NLY+K
Sbjct: 244 SPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVK 303
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL IDD+KLKE+FS +G I S KV+ G SK GFV F++PEEA++AL +NG
Sbjct: 304 NLNVDIDDKKLKEVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNG--- 360
Query: 301 VSKPLYVAV 309
PL+ +V
Sbjct: 361 --HPLFFSV 367
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 151/289 (52%), Gaps = 18/289 (6%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA-TDGSGQSKGFGFVQFENKESAQNAID 99
++++ +LD + L F G I S ++ +G+S + +V + A A+
Sbjct: 17 ASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALG 76
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN + K + + +R+ A KT F N+FVKNLD S + L+ IF +YGTI
Sbjct: 77 LLNHTNLKGKPMRI----MWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTIL 132
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V + +G+SK FGFV FE+ D A A AL+ ++ +V K KK+ER
Sbjct: 133 SCKVAGE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPC 191
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ NLY+KNL ++I ++ LK++FS G ++S +M D G SK GF
Sbjct: 192 EVFT------------NLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGF 239
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
V F +P++A +A+ MNG +I SK L+V AQRK ER L+ ++ +
Sbjct: 240 VNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLH 288
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 207/311 (66%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDK+ID++AL FS+F
Sbjct: 69 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAF 128
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 129 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 186
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE L K+F EYG S V+RD GKSK FGFV +E
Sbjct: 187 AEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 246
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + VG+AQKK ER EL+ +FE+ + ++ G+ +YIK
Sbjct: 247 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIK 306
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA +A+ EMNG++I
Sbjct: 307 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEACKAVDEMNGRII 365
Query: 301 VSKPLYVAVAQ 311
SK L+V + Q
Sbjct: 366 GSKTLHVTLGQ 376
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 166/300 (55%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD++ + L +F +G I S V
Sbjct: 81 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKV 136
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 137 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 190
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T ++ N+++KN GD IDDEKL +LFSE+G S KV+RD +G SKG GFV +
Sbjct: 191 ----TRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 246
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ E++GK I K L V AQ+K ER A L+ +F +++ + P +P+Y
Sbjct: 247 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLK--LKEKNRPSGVPIY 304
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE LK+IF EYG+ S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRIM 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 156/275 (56%), Gaps = 15/275 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DDEKLKE+FSE+G+ S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318
T E A +A+ +++GK I K LYV AQ+K ER A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 210/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++ L FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKNL + DE LK++F EYG I S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +SIDDEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDESIDDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRLV 366
Query: 301 VSKPLYVAVAQ 311
SK L+V + Q
Sbjct: 367 GSKALHVTLGQ 377
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 167/300 (55%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KNLGD ++DEKLKELFSE+G I S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ E++GK + K LYV AQ+K ER A L+ R S PP +P+Y
Sbjct: 248 THEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 184/555 (33%), Positives = 280/555 (50%), Gaps = 90/555 (16%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+SA +A++ +NF + K IRIM+ RDP++R SG GN+F+KNL +D + L F F
Sbjct: 73 NSATKAMEEMNFKRVGEKCIRIMWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKF 132
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM--LINDKQ--VFVGHFLRKQ 120
G ILSCK+ D SG S+G+GFV F++ +A++AI+ +NG+ ++K+ ++V +F+R+
Sbjct: 133 GEILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRN 192
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
R A+ F NV++K + + ++K F ++G ITSA + +D +G++ F F NFE
Sbjct: 193 AR-LAALVANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNGRA--FAFCNFE 249
Query: 181 NADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
DDA KA+E + + + + YV +AQ +SER L+ ++ Q G
Sbjct: 250 KHDDAVKAIEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQS------LGN 303
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
NLY++N ++ L ELF E+G I SC+VM D +G+S+G GFV+F ++A+ AL EM
Sbjct: 304 NLYVRNFDPEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREM 363
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL 355
+G+M+ KPL V +AQR+++R F+ +R ++PP P G+ +Q
Sbjct: 364 SGRMLNGKPLVVNIAQRRDQR-------FTMLRLQLQQRLQMMMRQIHPP-PFGMPRQM- 414
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
PQ G Q P+ MP PV+ + P A P +
Sbjct: 415 ----------PQRRRGRQHPRGHDQMPSLPVMP----PVIPRNDMFNTPSMGVSAAP--R 458
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
T Q P PP LP
Sbjct: 459 TPQASPATAPDTPP-------------------------LP------------------- 474
Query: 476 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 535
PITA L N + E+QR LG+ LY V +L D A K+TGM LEM+ E LL +
Sbjct: 475 -PITA--EDLQNMTMEEQRAALGDRLYIKVYELAPDHAPKITGMFLEMNPKEAHTLLTNQ 531
Query: 536 EALKAKVAEAMEVLR 550
L+ KV EA+ VL+
Sbjct: 532 RLLQDKVTEALCVLK 546
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 23/210 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +LD + ++ L +IF YGTI + V RD +S +G+VN++NA+ A KA+E
Sbjct: 22 SLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAMEE 81
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 250
+N K+ VG E+ ++ ++Q ++ ++ G N+++KNL +D +
Sbjct: 82 MNFKR-------VG--------EKCIRIMWQQ--RDPALRYSGNGNVFVKNLKGEVDSRE 124
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLY 306
L +F +FG I SCKVM D SG S+G GFV F A A+ MNG + LY
Sbjct: 125 LSLIFKKFGEILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALY 184
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSV 336
VA R+ R A L A F+ + + P+V
Sbjct: 185 VANFIRRNARLAALVANFTNVYIKQILPTV 214
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 289
+ Q +LY+ +L +I + +L E+F +GTI + +V RD + S G G+V + A+
Sbjct: 17 QLQVASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSAT 76
Query: 290 RALAEMNGKMIVSKPLYVAVAQR 312
+A+ EMN K + K + + QR
Sbjct: 77 KAMEEMNFKRVGEKCIRIMWQQR 99
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 210/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF LN K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKNL + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+ +
Sbjct: 308 NLDETIDDEKLKEEFSPFGSISRAKVMME-VGQGKGFGVVCFSSFEEAAKAVDEMNGRTV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
L+N K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLLNGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KNLGD +DDEKLKELFSE+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLAELRRRFERL--RLKDKSRPPGVPIY 305
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 210/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 167/300 (55%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DDEKLKELFSE+G S KV+RD G SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK + K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ E DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+G+ IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK + K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEAS+A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEASKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 209/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ +D G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +SI DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDESISDEKLKEEFSSFGSISRAKVMME-VGHGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DDEKLKELFSE+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ + R S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR--FERLRLKEKSRPPGVPIY 305
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 210/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID+++L FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKNL + DE LK +F EYG S ++RD GKSK FGFV +E
Sbjct: 188 AEVRTRDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
D A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++ID+EKLKE FS FG+I+ KVM + G KG G + FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETIDEEKLKEEFSAFGSISRAKVMME-VGQGKGFGVICFSSFEEATKAVEEMNGRLV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 164/300 (54%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T DK N+++KNLGD +DDEKLK LFSE+G S K++RD SG SKG GFV +
Sbjct: 192 ----TRDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T + A +A+ +++GK + K LYV AQ+K ER A L+ R S PP +P+Y
Sbjct: 248 THDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMLE-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 55 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 114
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 115 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 172
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 173 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 232
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 233 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 292
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 293 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 351
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 352 GSKPLHVTLGQ 362
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 17/302 (5%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKL 101
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S
Sbjct: 65 NFDLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 120
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 121 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 176
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV
Sbjct: 177 ------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 230
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 341
+ T E A +A+ +++GK I K LYV AQ+K ER A + + R S PP +P
Sbjct: 231 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA--ELRRRFERLRLKEKSRPPGVP 288
Query: 342 MY 343
+Y
Sbjct: 289 IY 290
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 38 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 97
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 98 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 155
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 156 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 215
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 216 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 275
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 276 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 334
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 335 GSKPLHVTLGQ 345
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 160/288 (55%), Gaps = 17/288 (5%)
Query: 57 LHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115
L+ F G + +I D +S G+G+V F A+ A++ +N LIN K
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPF---R 58
Query: 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 175
+ Q + + K+ N+F+KNLD+S + L +F +G I S V+ D +G SK +
Sbjct: 59 LMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYA 116
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
+V+F++ A +A+ +NG + ++R+ YVG+ + ER E++ T D+
Sbjct: 117 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFT 167
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ ++
Sbjct: 168 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 227
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
+GK I K LYV AQ+K ER A L+ R S PP +P+Y
Sbjct: 228 HGKSIDGKVLYVGRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 273
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 206/330 (62%), Gaps = 18/330 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SA RA++ +NF + +K +R+M+ RDPS+R SG GN+F+KNL+K +D K+LHD F+ FG
Sbjct: 78 SAERAIESMNFRRVGDKCVRLMWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI----NDKQVFVGHFLRKQE 121
+ILSCK+ D G+S+G+GFV F+++ SA++AI K+NG + K ++V +F+R+
Sbjct: 138 SILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R A+ F NV++K + + E ++ F ++G ITSA +D G + F F NFE
Sbjct: 198 R-LAALVANFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSG--RVFAFCNFEK 254
Query: 182 ADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 236
DDA KAVEA++ D + YV +AQ +SER L+ ++ Q + G N
Sbjct: 255 HDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ------HQSLGNN 308
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
LY++N L ELF E+G + SC+VM SG S+G GFV+FS +EA+ AL EMN
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMN 368
Query: 297 GKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 369 GRMLNGKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 152/296 (51%), Gaps = 29/296 (9%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 99
+I++ +LD +I+ L + F FG IL+ ++ D Q S G+G+V F+N SA+ AI+
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIE 84
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N + DK V L Q+R+ + NVFVKNL++ + L IF ++G+I
Sbjct: 85 SMNFRRVGDKCV----RLMWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSIL 140
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG----KKFDDREWYVGKAQKKSEREQ 215
S VM D +GKS+ +GFV+F++ A A+ +NG D + YV +++ R
Sbjct: 141 SCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA 200
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
L F N+YIK + +++ E ++ F++FG ITS +D SG +
Sbjct: 201 ALVANFT-------------NVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSG--R 245
Query: 276 GSGFVAFSTPEEASRALAEMNGKMI--VSKP---LYVAVAQRKEERRARLQAQFSQ 326
F F ++A +A+ M+ I ++ P LYV AQ + ER L+ ++ Q
Sbjct: 246 VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PIT L + SP++QR LG+ L+ V ++ + A K+TGM LEM+ E LL +
Sbjct: 478 PIT--PQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMNPKEAYELLNDQK 535
Query: 537 ALKAKVAEAMEVLRS 551
L+ +V EA+ VL++
Sbjct: 536 RLEERVTEALCVLKA 550
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 208/330 (63%), Gaps = 18/330 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SA +A++ +NF + +K +R+M+ RDP++R SG GN+F+KNL+K +D K+LHD F+ FG
Sbjct: 78 SAEKAIESMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI----NDKQVFVGHFLRKQE 121
+ILSCK+ D G+S+G+GFV F+++ SA++AI K+NG + K ++V +F+R+
Sbjct: 138 SILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R A+ F NV++K + + + E ++K F ++G ITSA +D G + F F NFE
Sbjct: 198 R-LAALVANFTNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEK 254
Query: 182 ADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 236
DDA KAVEA++ D + YV +AQ +SER L+ ++ Q + G N
Sbjct: 255 HDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ------HQSLGNN 308
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
LY++N L ELF E+G + SC+VM SG S+G GFV+FS +EA+ AL EMN
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMN 368
Query: 297 GKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 369 GRMLNGKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 154/296 (52%), Gaps = 29/296 (9%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 99
+I++ +LD +I+ L + F FG IL+ ++ D Q S G+G+V F+N ESA+ AI+
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIE 84
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N + DK V L Q+R+ + NVFVKNL++ + L IF ++G+I
Sbjct: 85 SMNFKRVGDKCV----RLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSIL 140
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG----KKFDDREWYVGKAQKKSEREQ 215
S VM+D +GKS+ +GFV+F++ A A+ +NG D + YV +++ R
Sbjct: 141 SCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA 200
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
L F N+YIK + ++ E +++ F++FG ITS +D SG +
Sbjct: 201 ALVANFT-------------NVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSG--R 245
Query: 276 GSGFVAFSTPEEASRALAEMNGKMI--VSKP---LYVAVAQRKEERRARLQAQFSQ 326
F F ++A +A+ M+ I ++ P LYV AQ + ER L+ ++ Q
Sbjct: 246 VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L + SP++QR LG+ L+ V ++ + A K+TGM LEM E LL + L+ +V E
Sbjct: 494 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEDRVTE 553
Query: 545 AMEVLRS 551
A+ VL++
Sbjct: 554 ALCVLKA 560
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 208/330 (63%), Gaps = 18/330 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SA +A++ +NF + +K +R+M+ RDP++R SG GN+F+KNL+K +D K+LHD F+ FG
Sbjct: 78 SAEKAIESMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI----NDKQVFVGHFLRKQE 121
+ILSCK+ D G+S+G+GFV F+++ SA++AI K+NG + K ++V +F+R+
Sbjct: 138 SILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R A+ F NV++K + + + ++K F ++G ITSA +D G + F F NFE
Sbjct: 198 R-LAALVANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEK 254
Query: 182 ADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 236
DDA KAVEA++ D + YV +AQ +SER L+ ++ Q + G N
Sbjct: 255 HDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ------HQALGNN 308
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
LY++N L ELF E+G + SC+VM SG+S+G GFV+FS +EA+ AL EMN
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMN 368
Query: 297 GKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 369 GRMLNGKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 155/296 (52%), Gaps = 29/296 (9%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 99
+I++ +LD +I+ L + F FG IL+ ++ D Q S G+G+V F+N +SA+ AI+
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N + DK V L Q+R+ + NVFVKNL++ + L IF ++G+I
Sbjct: 85 SMNFKRVGDKCV----RLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSIL 140
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG----KKFDDREWYVGKAQKKSEREQ 215
S VM+D +GKS+ +GFV+F++ A A+ +NG D + YV +++ R
Sbjct: 141 SCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA 200
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
L F N+YIK + +++ + +++ F++FG ITS +D SG +
Sbjct: 201 ALVANFT-------------NVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--R 245
Query: 276 GSGFVAFSTPEEASRALAEMNGKMI--VSKP---LYVAVAQRKEERRARLQAQFSQ 326
F F ++A +A+ M+ I ++ P LYV AQ + ER L+ ++ Q
Sbjct: 246 VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +LD + + L ++F +GTI + V RD +S +G+VNF+N D A KA+E+
Sbjct: 26 SIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N K+ D+ + Q+ G N+++KNL +D + L
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNG----------------NVFVKNLEKDVDSKSL 129
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYV 307
++F++FG+I SCKVM+D G S+G GFV F A A+ +MNG + K LYV
Sbjct: 130 HDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYV 189
Query: 308 AVAQRKEERRARLQAQFSQMRPVAMGPSV 336
A R+ R A L A F+ + + P+V
Sbjct: 190 ANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PIT L + SP++QR LG+ L+ V ++ + A K+TGM LEM E LL +
Sbjct: 484 PIT--PQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQK 541
Query: 537 ALKAKVAEAMEVLRS 551
L+ +V EA+ VL++
Sbjct: 542 RLEERVTEALCVLKA 556
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GDILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 207/330 (62%), Gaps = 18/330 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SA +A++ +NF + +K +R+M+ RDP++R SG GN+F+KNL+K +D K+LHD F+ FG
Sbjct: 78 SAEKAIESMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI----NDKQVFVGHFLRKQE 121
+ILSCK+ D G+S+G+GFV F+++ SA++AI K+NG + K ++V +F+R+
Sbjct: 138 SILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R A+ F NV++K + + E ++K F ++G ITSA +D G + F F NFE
Sbjct: 198 R-LAALVANFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEK 254
Query: 182 ADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 236
DDA KAVEA++ D + YV +AQ +SER L+ ++ Q + G N
Sbjct: 255 HDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ------HQSLGNN 308
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
LY++N L ELF E+G + SC+VM SG S+G GFV+FS +EA+ AL EMN
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMN 368
Query: 297 GKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 369 GRMLNGKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 155/296 (52%), Gaps = 29/296 (9%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 99
+I++ +LD +I+ L + F FG IL+ ++ D Q S G+G+V F+N +SA+ AI+
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N + DK V L Q+R+ + NVFVKNL++ + L IF ++G+I
Sbjct: 85 SMNFKRVGDKCV----RLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSIL 140
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG----KKFDDREWYVGKAQKKSEREQ 215
S VM+D +GKS+ +GFV+F++ A A+ +NG D + YV +++ R
Sbjct: 141 SCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA 200
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
L F N+YIK + +++ E +++ F++FG ITS +D SG +
Sbjct: 201 ALVANFT-------------NVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSG--R 245
Query: 276 GSGFVAFSTPEEASRALAEMNGKMI--VSKP---LYVAVAQRKEERRARLQAQFSQ 326
F F ++A +A+ M+ I ++ P LYV AQ + ER L+ ++ Q
Sbjct: 246 VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +LD + + L ++F +GTI + V RD +S +G+VNF+N D A KA+E+
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N K+ D+ + Q+ G N+++KNL +D + L
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNG----------------NVFVKNLEKDVDSKSL 129
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYV 307
++F++FG+I SCKVM+D G S+G GFV F A A+ +MNG + K LYV
Sbjct: 130 HDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYV 189
Query: 308 AVAQRKEERRARLQAQFSQMRPVAMGPSV 336
A R+ R A L A F+ + + P+V
Sbjct: 190 ANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PIT L + SP++QR LG+ L+ V ++ + A K+TGM LEM E LL +
Sbjct: 484 PIT--PQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQK 541
Query: 537 ALKAKVAEAMEVLRS 551
L+ +V EA+ VL++
Sbjct: 542 RLEERVTEALCVLKA 556
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 208/330 (63%), Gaps = 18/330 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SA +A++ +NF + +K +R+M+ RDP++R SG GN+F+KNL+K +D K+LHD F+ FG
Sbjct: 78 SAEKAIESMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI----NDKQVFVGHFLRKQE 121
+ILSCK+ D G+S+G+GFV F+++ SA++AI K+NG + K ++V +F+R+
Sbjct: 138 SILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
R A+ F NV++K + + + ++K F ++G ITSA +D G + F F NFE
Sbjct: 198 R-LAALVANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEK 254
Query: 182 ADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 236
DDA KAVEA++ D + YV +AQ +SER L+ ++ Q + G N
Sbjct: 255 HDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ------HQALGNN 308
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
LY++N L ELF E+G + SC+VM SG+S+G GFV+FS +EA+ AL EMN
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMN 368
Query: 297 GKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
G+M+ KPL V +AQR+++R ++ QF Q
Sbjct: 369 GRMLNGKPLIVNIAQRRDQRYTIVRLQFQQ 398
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 155/296 (52%), Gaps = 29/296 (9%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 99
+I++ +LD +I+ L + F FG IL+ ++ D Q S G+G+V F+N +SA+ AI+
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N + DK V L Q+R+ + NVFVKNL++ + L IF ++G+I
Sbjct: 85 SMNFKRVGDKCV----RLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSIL 140
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG----KKFDDREWYVGKAQKKSEREQ 215
S VM+D +GKS+ +GFV+F++ A A+ +NG D + YV +++ R
Sbjct: 141 SCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA 200
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
L F N+YIK + +++ + +++ F++FG ITS +D SG +
Sbjct: 201 ALVANFT-------------NVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--R 245
Query: 276 GSGFVAFSTPEEASRALAEMNGKMI--VSKP---LYVAVAQRKEERRARLQAQFSQ 326
F F ++A +A+ M+ I ++ P LYV AQ + ER L+ ++ Q
Sbjct: 246 VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +LD + + L ++F +GTI + V RD +S +G+VNF+N D A KA+E+
Sbjct: 26 SIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N K+ D+ + Q+ G N+++KNL +D + L
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNG----------------NVFVKNLEKDVDSKSL 129
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYV 307
++F++FG+I SCKVM+D G S+G GFV F A A+ +MNG + K LYV
Sbjct: 130 HDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYV 189
Query: 308 AVAQRKEERRARLQAQFSQMRPVAMGPSV 336
A R+ R A L A F+ + + P+V
Sbjct: 190 ANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PIT L + SP++QR LG+ L+ V ++ D A K+TGM LEM E LL +
Sbjct: 484 PIT--PQELESMSPQEQRAALGDRLFLKVYEIPPDVAPKITGMFLEMKPKEAYELLNDQK 541
Query: 537 ALKAKVAEAMEVLRS 551
L+ +V EA+ VL++
Sbjct: 542 RLEERVTEALCVLKA 556
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 208/311 (66%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++TK F NVFVKN + DE LK+IF YG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTKDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK + + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ E+A++A+ EMNG+ +
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEDATKAVDEMNGRTV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 164/300 (54%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DDEKLKE+FS +G S KV+RD SG SKG GFV +
Sbjct: 192 ----TKDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ R S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 207/311 (66%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDK ID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE LK+IF YG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK + + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+ +
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRTV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 166/300 (55%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+ + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DDEKLKE+FS +G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 207/311 (66%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDK ID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + DE LK+IF YG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK + + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+ +
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRTV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 166/300 (55%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+ + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DDEKLKE+FS +G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 150/307 (48%), Positives = 205/307 (66%), Gaps = 8/307 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+ +R ++R T
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYRAAEVRTRDRAT 188
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
F NVFVKN + DE LK IF EYG S V+RD GKSK FGFV +E +
Sbjct: 189 ------FTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEA 242
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIKNL +
Sbjct: 243 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDE 302
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+IDDEKLKE FS FG+I+ KVM + G KG G V +S+ EEA++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKP 361
Query: 305 LYVAVAQ 311
L+V + Q
Sbjct: 362 LHVTLGQ 368
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 163/300 (54%), Gaps = 26/300 (8%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ Y R E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY---------RAAEVR----- 182
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DDEKLK++FSE+G S KV+RD SG SKG GFV +
Sbjct: 183 ----TRDRATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYE 238
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 239 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPVY 296
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 209/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + D+ LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G + FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVICFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL V + Q
Sbjct: 367 GSKPLQVTLGQ 377
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G+I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T DK N+++KN GD +DD+KLKELFSE+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ R S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 207/311 (66%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN DE LK+IF YG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK + + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ E+A++A+ EMNG+ +
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEDATKAVDEMNGRTV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 164/300 (54%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN G+ +DDEKLKE+FS +G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ R S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 208/311 (66%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN + D+ LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++IDDEKLKE FS FG+I+ KVM + KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVEVEQ-GKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL V + Q
Sbjct: 367 GSKPLQVTLGQ 377
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 166/300 (55%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G+I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN GD +DD+KLKELFSE+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ R + PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR--RFERLRLKEKTRPPGVPIY 305
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 203/327 (62%), Gaps = 36/327 (11%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF +N KSIR+M+S RD +R+SG GN+
Sbjct: 61 LADAQKALDTMNFDVVNGKSIRLMWSQRDAYLRRSGIGNVM------------------- 101
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
+D G SKG+ FV F+N+ +A AI+++NG + D +VFVG F +++RE
Sbjct: 102 ----------SDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDRE 150
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++ K F NV++KN E DE LK++F +YG S VM D GKSK FGFV+F+
Sbjct: 151 A-ELRNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFD 209
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
N + A KAV+ +NGK + + +VG+AQKK ER+ ELK FEQ KE + QG+ LYIK
Sbjct: 210 NHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIK 269
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL++ FS FG+I+ KVM++ G SKG G + FS+ EEA++A+ EMNG ++
Sbjct: 270 NLDDTIDDEKLRKEFSSFGSISRVKVMQE-GGQSKGFGLICFSSLEEATKAMTEMNGHIL 328
Query: 301 VSKPLYVAVAQRK-EERRARLQAQFSQ 326
SKPL +A+A R ER+ L Q+ Q
Sbjct: 329 GSKPLSIALAHRHYXERKIYLTRQYLQ 355
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 151/292 (51%), Gaps = 51/292 (17%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N ++N K + L +R+ ++ NV
Sbjct: 71 MNFDVVNGKSIR----LMWSQRDAYLRRSGIGNV-------------------------- 100
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK-- 218
M D G SK + FV+F+N A +A+E +NG++ D + +VG+ + + +RE EL+
Sbjct: 101 ---MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRNK 156
Query: 219 -GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
G+F N+YIKN G+ +DDEKLKE+FS++G S KVM D SG SKG
Sbjct: 157 AGEFT-------------NVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGF 203
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 329
GFV+F E A +A+ EMNGK I + ++V AQ+K ER+A L+ F Q++
Sbjct: 204 GFVSFDNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKK 255
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 207/326 (63%), Gaps = 26/326 (7%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++SA++A++ LNF + K IRIM+ RDP++R SG+GNIF+KNL + +D + L F
Sbjct: 72 VNSASKAMEELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKK 131
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ--------VFVGH 115
FG ILSCK+ D SG+S+G+GFV F++ ++A+ AI+K+NG DK+ ++V +
Sbjct: 132 FGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNG----DKEHADADKAALYVAN 187
Query: 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 175
F+R+ R A+ F NV++K L + + ++K F ++G ITSA + +D +G++ F
Sbjct: 188 FIRRNAR-LAALVANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNGRA--FA 244
Query: 176 FVNFENADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVD 230
F NFE DDA KA+EA + ++ + + YV +AQ +SER L+ ++ Q
Sbjct: 245 FCNFEKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQS---- 300
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 290
G NLY++N ++ L ELF E+G I SC+VM D +GIS+G GFV+F ++A+
Sbjct: 301 --LGNNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANA 358
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEER 316
AL EMNG+M+ KPL V +AQR+++R
Sbjct: 359 ALREMNGRMLNGKPLVVNIAQRRDQR 384
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 156/301 (51%), Gaps = 29/301 (9%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAI 98
++++ +LD +I+ L D F +G IL+ ++ D Q S G+G+V +++ SA A+
Sbjct: 20 VASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASKAM 79
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN + +K + + Q+R+ + N+FVKNL E +L IF ++G I
Sbjct: 80 EELNFKRVGEKCIRI----MWQQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKKFGEI 135
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK----FDDREWYVGKAQKKSERE 214
S VM D GKS+ +GFV+F++ D A A+E +NG K D YV +++ R
Sbjct: 136 LSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADKAALYVANFIRRNARL 195
Query: 215 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 274
L F N+YIK L ++D + +++ FS+FG ITS + +D +G
Sbjct: 196 AALVANFT-------------NVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNG-- 240
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMI--VSKP---LYVAVAQRKEERRARLQAQFSQMRP 329
+ F F ++A +A+ + + + V++P LYV AQ + ER L+ ++ Q +
Sbjct: 241 RAFAFCNFEKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQS 300
Query: 330 V 330
+
Sbjct: 301 L 301
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 114/210 (54%), Gaps = 23/210 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +LD + + L IF YGTI + V RD +S +G+VN+++ + A+KA+E
Sbjct: 22 SLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASKAMEE 81
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 250
LN K+ VG E+ ++ ++Q ++ ++ G N+++KNL + +D +
Sbjct: 82 LNFKR-------VG--------EKCIRIMWQQ--RDPALRYSGSGNIFVKNLKEEVDSRE 124
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK----PLY 306
L +F +FG I SCKVM D SG S+G GFV F + A A+ +MNG + LY
Sbjct: 125 LSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADKAALY 184
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSV 336
VA R+ R A L A F+ + + P+V
Sbjct: 185 VANFIRRNARLAALVANFTNVYIKQLLPTV 214
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PI+A L S ++QR LG+ LY V +L D A K+TGM LEM+ E L LL +P+
Sbjct: 489 PISA--EDLQQMSVDEQRAALGDRLYIKVHELAPDHAPKITGMFLEMNPKEALALLSNPK 546
Query: 537 ALKAKVAEAMEVLR 550
+ KV EA+ VL+
Sbjct: 547 LMHEKVTEALCVLK 560
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
Q +LY+ +L +I++ +L ++F +GTI + +V RD + S G G+V + AS+
Sbjct: 18 LQVASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASK 77
Query: 291 ALAEMNGKMIVSKPLYVAVAQR 312
A+ E+N K + K + + QR
Sbjct: 78 AMEELNFKRVGEKCIRIMWQQR 99
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 197/493 (39%), Positives = 263/493 (53%), Gaps = 67/493 (13%)
Query: 104 MLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
ML+ K+VFVG F ++ RE K+ NV+VKN + E L+K+F +YGTITS
Sbjct: 1 MLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSC 60
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 219
VM DGKSK FGFV F ++A AV+ALN + D + +V +AQKKSER ELK
Sbjct: 61 DVMTS-DGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKK 119
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ EQ E + K+QG+NLY+KNL +S+DDE LK+ F FG ITS KVM D +G SKG GF
Sbjct: 120 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGF 179
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVP- 337
V F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP
Sbjct: 180 VCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPG 239
Query: 338 ----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP 393
P+ P PGP Y A P + Q FG Q + RP G P P
Sbjct: 240 GGLYPQQPQ--PGPG-------YYVANP--MQQQRNFGGPQMV----RPGGRWGPQNQYP 284
Query: 394 VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPL----GRNMQDFPFDM 449
V +Q Q PG V Q + P Q PRG + +Y G MQ P
Sbjct: 285 VQNQYMMAQGPG-------VYQNRMGRP-QNQQGGPRGPSQQYSQVAQGGIRMQGPPRPQ 336
Query: 450 GAGSMLPVPVDMGAGIPRRDAS-------------------------VGQPMPITALSTA 484
AG P P++ +G P+T S
Sbjct: 337 NAGVQQPNVQRPPPQQPQQQRPAPTGTKAQPQAYQQPYQQQRPQGIVIGGQEPLT--SAM 394
Query: 485 LANASPEQQRTLLGESLYPLVEQLE--RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
LA A+P++Q+ LLGE +Y L+E+L A K+TGM+LE+D +E++ +L+ E ++KV
Sbjct: 395 LAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKV 454
Query: 543 AEAMEVLRSVAQQ 555
EA VL S +Q
Sbjct: 455 DEAASVLASSQKQ 467
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 108/199 (54%), Gaps = 17/199 (8%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KN + ++L F+ +G I SC + T G+SKGFGFV F E A+ A+ L
Sbjct: 32 NVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGFGFVAFAEPEEAEAAVQAL 90
Query: 102 NGMLI--NDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDE 146
N + +D ++ V +K ER +K K N++VKNLDES DE
Sbjct: 91 NDSPVEGSDLKLHVCRAQKKSERH-AELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDE 149
Query: 147 DLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206
LKK F +G ITSA VM D +G+SK FGFV FE ++A AV +N K + YV
Sbjct: 150 ALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVAL 209
Query: 207 AQKKSEREQELKGQFEQAM 225
AQ+K +R +L Q+ Q +
Sbjct: 210 AQRKEDRRAQLASQYMQRL 228
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 61/93 (65%)
Query: 30 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 89
H+ ++K N+++KNLD+S+D +AL F SFGNI S K+ TD +G+SKGFGFV FE
Sbjct: 124 HKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFE 183
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
E A A+ ++N ++ K ++V RK++R
Sbjct: 184 KPEEATTAVTEMNSKMVCSKPLYVALAQRKEDR 216
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 162/221 (73%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL+VLN+ PL + IRIM+S RDPS+RKSG GNIFIKNLDKSI+ K L+DTFS FG
Sbjct: 67 AEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKI D +GQSKG+GFV FE +E A+ AI+K+N M+I D+ V+VG F+ K ER++ A
Sbjct: 127 ILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQA 186
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K KFNN++VKN T +E LK++F E+G I SA VM+D +GKSK FGFV + + D A
Sbjct: 187 RKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAE 246
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 227
AV ++GK+ + R Y +AQ+K ER++ELK + E+ E
Sbjct: 247 NAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAE 287
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 163/292 (55%), Gaps = 21/292 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
++++ +L + AL FS G +LS ++ D + QS G+G+V FE+ + A+ A+
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQAL 71
Query: 99 DKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
+ LN + +G +R +R+ K+ N+F+KNLD+S ++L F +G
Sbjct: 72 EVLN------YEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG 125
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
I S ++ D +G+SK +GFV+FE + A +A+E +N DR YVGK K+ER+ +
Sbjct: 126 RILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQ 185
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
+ K + NLY+KN D+EKLKE+FSEFG I S VM+D G SKG
Sbjct: 186 AR------------KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKG 233
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
GFV + P+ A A+ M+GK I + LY A AQRKEER+ L+ + + R
Sbjct: 234 FGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQR 285
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 204/331 (61%), Gaps = 19/331 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SAA+A++ LNF + +K +RIM+ RDP++R SG GNIF+KNL +D + L F FG
Sbjct: 82 SAAKAMEALNFKRVGDKCMRIMWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFG 141
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ-----VFVGHFLRKQ 120
+ILSCK+ D G+S+G+GFV F+N +A+ AI+ +NG + + ++V +F+R+
Sbjct: 142 DILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRN 201
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
R + F NV++K + + E ++K F ++G ITS+ +D +G + F F NFE
Sbjct: 202 ARLATLV-ANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNG--RVFAFCNFE 258
Query: 181 NADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
+DA KA+EA + + D + YV +AQ +SER L+ ++ Q +T+ G
Sbjct: 259 KHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC--QTL----GN 312
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
NLY++N +E L ELF E+G I SC+VM D +G S+G GFV+F ++A+ AL EM
Sbjct: 313 NLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREM 372
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
NG+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 373 NGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQ 403
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 153/302 (50%), Gaps = 30/302 (9%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAI 98
++++ +LD + L + F FG IL+ ++ D Q S G+G+V F + +SA A+
Sbjct: 28 VASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAM 87
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN + DK + + Q+R+ + N+FVKNL +L IF ++G I
Sbjct: 88 EALNFKRVGDKCMRIMW----QQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFGDI 143
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-FDDRE----WYVGKAQKKSER 213
S VM D +GKS+ +GFV+F+N + A +A+E +NG+K D E YV +++ R
Sbjct: 144 LSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRNAR 203
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
L F N+YIK + ++D E +++ FS+FG ITS +D +G
Sbjct: 204 LATLVANFT-------------NVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNG- 249
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMI--VSKP---LYVAVAQRKEERRARLQAQFSQMR 328
+ F F E+A +A+ + + + V P LYV AQ + ER L+ ++ Q +
Sbjct: 250 -RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQ 308
Query: 329 PV 330
+
Sbjct: 309 TL 310
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 25/222 (11%)
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 179
TV + TK +++V +LD T+ L ++F +GTI + V RD +S +G+VNF
Sbjct: 18 TVPVTTKALQVASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNF 77
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ D AAKA+EALN K+ D+ + Q+ G N+++
Sbjct: 78 NSHDSAAKAMEALNFKRVGDKCMRIMWQQRDPTLRYSGNG----------------NIFV 121
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL + +D +L +F +FG I SCKVM D G S+G GFV F A A+ MNG+
Sbjct: 122 KNLKNEVDSRELSVIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEK 181
Query: 300 IVSKP-----LYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 336
+ LYVA R+ R A L A F+ + + P+V
Sbjct: 182 DHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTV 223
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PITA L + S ++QR LG+ LY V ++ D A K+TGM LEMD E LL +
Sbjct: 493 PITA--EDLRSMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLTNQR 550
Query: 537 ALKAKVAEAMEVLRS 551
L+ KV EA+ VL++
Sbjct: 551 LLQEKVIEALCVLKA 565
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 203/335 (60%), Gaps = 27/335 (8%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
SAA+A++ LNF + +K +RIM+ RDP++R SG GN+F+KNL +D + L F FG
Sbjct: 75 SAAKAMEALNFKRVGDKCMRIMWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFG 134
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ---------VFVGHF 116
+ILSCK+ D G+S+G+GFV F+N +A+ AI+ +NG DK ++V +F
Sbjct: 135 DILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNG----DKDHADEEKKMGLYVANF 190
Query: 117 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 176
+R+ R + F NV++K + + E ++K F +G ITS+ +D +G + F F
Sbjct: 191 IRRNARLATLV-ANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG--RVFAF 247
Query: 177 VNFENADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQELKGQFEQAMKETVDK 231
NFE +DA KA+EA + + D + YV +AQ +SER L+ ++ Q +T+
Sbjct: 248 CNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC--QTL-- 303
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 291
G NLY++N +E L ELF E+G I SC+VM D +G S+G GFV+F ++A+ A
Sbjct: 304 --GNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAA 361
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
L EMNG+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 362 LREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQ 396
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 151/302 (50%), Gaps = 30/302 (9%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAI 98
++++ +LD + L + F FG IL+ ++ D Q S G+G++ F N +SA A+
Sbjct: 21 VASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAM 80
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN + DK + + Q+R+ + NVFVKNL +L IF ++G I
Sbjct: 81 EALNFKRVGDKCMRIMW----QQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFGDI 136
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG-KKFDDRE----WYVGKAQKKSER 213
S VM D +GKS+ +GFV+F+N + A +A+E +NG K D E YV +++ R
Sbjct: 137 LSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDKDHADEEKKMGLYVANFIRRNAR 196
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
L F N+YIK + ++D E +++ FS FG ITS +D +G
Sbjct: 197 LATLVANFT-------------NVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG- 242
Query: 274 SKGSGFVAFSTPEEASRALAE-----MNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ F F E+A +A+ ++G + + LYV AQ + ER L+ ++ Q +
Sbjct: 243 -RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQ 301
Query: 329 PV 330
+
Sbjct: 302 TL 303
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 113/206 (54%), Gaps = 15/206 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK- 100
N++IK + ++D + + FS FG I S D +G + F F FE E A AI+
Sbjct: 206 NVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEAS 263
Query: 101 ----LNGMLINDKQVFVGHFLRKQERETVAIKTKF-------NNVFVKNLDESTTDEDLK 149
++G++ ++++V + ER +A++ K+ NN++V+N D T+E+L
Sbjct: 264 HEQFVDGVVPPGEKLYVQRAQPRSER-LIALRQKYMQCQTLGNNLYVRNFDPEFTEENLH 322
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
++F EYG I S VM D +G S+ FGFV+F NAD A A+ +NG+ + + V AQ+
Sbjct: 323 ELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNGRMLNGKPLIVNIAQR 382
Query: 210 KSEREQELKGQFEQAMKETVDKFQGL 235
+ +R L+ QF+Q ++ + + +
Sbjct: 383 RDQRFMMLRLQFQQRLQAMMRRMHSM 408
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 25/222 (11%)
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 179
TV + TK +++V +LD T+ L ++F +GTI + V RD +S +G++NF
Sbjct: 11 TVPVTTKALQVASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINF 70
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
N D AAKA+EALN K+ D+ + Q+ G N+++
Sbjct: 71 NNHDSAAKAMEALNFKRVGDKCMRIMWQQRDPALRYSGNG----------------NVFV 114
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL + +D +L +F +FG I SCKVM D G S+G GFV F A A+ MNG
Sbjct: 115 KNLKNEVDSRELGAIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDK 174
Query: 300 IVSKP-----LYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 336
+ LYVA R+ R A L A F+ + + P+V
Sbjct: 175 DHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTV 216
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PITA L S ++QR LG+ LY V ++ D A K+TGM LEMD E LL +
Sbjct: 492 PITA--EDLRTMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLNNQR 549
Query: 537 ALKAKVAEAMEVLRS 551
L+ KV EA+ VL++
Sbjct: 550 LLQEKVIEALCVLKA 564
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 202/323 (62%), Gaps = 9/323 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AA+ + NF L + +RIM+S RDP+ R+SG GNIFIKNL +D+KAL+DTF FG
Sbjct: 84 AAKVYEAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGT 143
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
+LSC++ D G S+G FVQ+E+ E A+ I ++N I DK V V + +++R A
Sbjct: 144 VLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDKVVKVEAYKPRRQRMLEA 203
Query: 127 IKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM-RDGDGKSKCFGFVNFENAD 183
+T+ F NVF KN+ +DED+ K F +G I S V+ D G+ +GFV +++
Sbjct: 204 EETQKNFTNVFFKNVAADISDEDIMKEFENFGEIESKVLKSHDQFGR---YGFVAYKDTA 260
Query: 184 DAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
DA KAV LN K D + YV +AQ+KSER L+ +FE+ E K++ NLYIKN
Sbjct: 261 DAQKAVSELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKN 320
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
+ + +++L+++F +GTI S +V++D G S+ GFV FS+ EEA+RA+ EMNG+M
Sbjct: 321 FSEDVTEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTA 380
Query: 302 S-KPLYVAVAQRKEERRARLQAQ 323
KPLYV+ + KEER +Q Q
Sbjct: 381 DGKPLYVSRFRNKEERAQEVQRQ 403
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 20/281 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQ-SKGFGFVQFENKESAQNA 97
+ ++++ +L K + L++ F+SFG + S ++ D Q S G+G+V F E A
Sbjct: 28 SASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKV 87
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+ N + + V + ER+ ++ N+F+KNL ++ L F +GT
Sbjct: 88 YEAANFEELKGQPVRIMF----SERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGT 143
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
+ S V+ D +G S+ FV +E+A+ A + + +N KK D+ V K + R Q +
Sbjct: 144 VLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDK---VVKVEAYKPRRQRM 200
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
+ET F N++ KN+ I DE + + F FG I S KV++ +
Sbjct: 201 -----LEAEETQKNF--TNVFFKNVAADISDEDIMKEFENFGEIES-KVLKSHDQFGR-Y 251
Query: 278 GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQRKEER 316
GFVA+ +A +A++E+N K + + LYVA AQRK ER
Sbjct: 252 GFVAYKDTADAQKAVSELNDKPLGADGTKLYVARAQRKSER 292
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRD-PSGISKGSGFVAFSTPEEASRALA 293
+LY+ +L + + +L F+ FG T+ S +V RD + S G G+V F+TPE+A++
Sbjct: 30 SLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKVYE 89
Query: 294 EMNGKMIVSKPLYVAVAQRKEERR 317
N + + +P+ + ++R +R
Sbjct: 90 AANFEELKGQPVRIMFSERDPTKR 113
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 496 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
+LG L+ LV+ + A K+TGMLL+ VL LE+P ALKA + +A +VL
Sbjct: 490 VLGNPLFSLVQAQQPKHAPKITGMLLDQPDEAVLEYLENPAALKAALDQAYKVL 543
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/204 (58%), Positives = 155/204 (75%), Gaps = 2/204 (0%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
ALD +NF P+ NK IRIM+S RDPS+RKSG GN+FIKNLDKSID+KA++DTFS+FGNILS
Sbjct: 1 ALDTMNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILS 60
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA--I 127
C++ATD SKG+GFV FE +E+A NAI K+NGML+N K+VFVG F+ ++ERE +
Sbjct: 61 CRVATDEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDK 120
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
+F NV++KN + DE L IF +YG +TSA VM D +GK++ FGFV+FE+ + A K
Sbjct: 121 ARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEK 180
Query: 188 AVEALNGKKFDDREWYVGKAQKKS 211
AVE LNGK + YVG+AQKK+
Sbjct: 181 AVEELNGKDVGGKPLYVGRAQKKA 204
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 114/186 (61%), Gaps = 10/186 (5%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K+ NVF+KNLD+S ++ + F +G I S V D + SK +GFV+FE + A
Sbjct: 28 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANN 87
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+ +NG + ++ +VG+ + ERE+ L ++A + T N+YIKN GD +D
Sbjct: 88 AISKVNGMLLNGKKVFVGRFIPRKERERLLG---DKARRFT-------NVYIKNFGDELD 137
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
DEKL +F ++G +TS KVM D +G ++G GFV+F PE A +A+ E+NGK + KPLYV
Sbjct: 138 DEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYV 197
Query: 308 AVAQRK 313
AQ+K
Sbjct: 198 GRAQKK 203
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ + + FS FG I SC+V D SKG GFV F T E A+ A++++
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKV 92
Query: 296 NGKMIVSKPLYVA-VAQRKEERR 317
NG ++ K ++V RKE R
Sbjct: 93 NGMLLNGKKVFVGRFIPRKERER 115
>gi|93359570|gb|ABF13311.1| poly-A binding protein, partial [Phaseolus vulgaris]
Length = 172
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/174 (78%), Positives = 151/174 (86%), Gaps = 4/174 (2%)
Query: 260 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
TITSCKVMRDP+G+S+GSGFVAFSTPEEASRALAEMNGKM+VSKPLYV +AQRKE+RRAR
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 320 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 379
LQAQF+QMRPV M PSV PR+PMYPPG G+GQQ Y Q PPAIIP Q GFGYQQQLVPG
Sbjct: 61 LQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFY-QGPPAIIPSQPGFGYQQQLVPG 119
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA 433
MRP AP+PNFFVP+V QGQQGQRPGGRR VQQ+QQP+P+MP QM PRG
Sbjct: 120 MRPGAAPVPNFFVPMVQQGQQGQRPGGRRA---VQQSQQPVPMMPQQMLPRGPC 170
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
TITS VMRD +G S+ GFV F ++A++A+ +NGK + YV AQ+K +R
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 217 LKGQFEQ 223
L+ QF Q
Sbjct: 61 LQAQFAQ 67
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
I SCK+ D +G S+G GFV F E A A+ ++NG ++ K ++V RK++R
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRA 59
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 196/328 (59%), Gaps = 34/328 (10%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFV 86
M+ RDP++R SG GNIF+KNL +D + L F FG ILSCK+ +D G+S+G+GFV
Sbjct: 1 MWQQRDPALRYSGNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFV 60
Query: 87 QFENKESAQNAIDKLNGMLINDKQ--------VFVGHFLRKQERETVAIKTKFNNVFVKN 138
F++ +A+NAI+ +NG DK+ ++V +F+R+ R A+ F NV++K
Sbjct: 61 HFKDDTAAKNAIESMNG----DKEHADAAKAALYVANFIRRNAR-LAALVANFTNVYIKQ 115
Query: 139 LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198
L + + ++K F ++G ITSA +D +G++ F F NFE DDA KA+EA + + +
Sbjct: 116 LLPTVNKDTIEKFFSKFGGITSAATCKDKNGRA--FAFCNFEKHDDAVKAIEAFHDQVIE 173
Query: 199 D-----REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
+ YV +AQ +SER L+ ++ Q G NLY++N ++ L
Sbjct: 174 GVTPPGEKLYVQRAQPRSERLIALRQKYMQCQS------LGNNLYVRNFDVEFSEKDLHV 227
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
LF E+GTI SC+VM D +G S+G GFV+F ++A+ AL EMNG+M+ KPL V +AQR+
Sbjct: 228 LFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRR 287
Query: 314 EERRARLQAQFSQ--------MRPVAMG 333
++R L+ QF Q MRP+++G
Sbjct: 288 DQRFMMLRVQFQQRMQMMLRHMRPMSLG 315
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
P+P + S L+N + E+QR LG+ LY V ++ D A K+TGM LEMD + LL +
Sbjct: 402 PLPPIS-SEDLSNMTLEEQRAALGDRLYIKVYEIAPDYAPKITGMFLEMDMKDAFVLLSN 460
Query: 535 PEALKAKVAEAMEVLR 550
+ L+ KV EA+ VL+
Sbjct: 461 QKLLEDKVTEALCVLK 476
>gi|34015127|gb|AAQ56324.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
Length = 266
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/213 (61%), Positives = 159/213 (74%), Gaps = 8/213 (3%)
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMP 424
P GFG+QQ L+PGMRP+ P+PNF +P+V QGQQ QRP GRR G G +QQ P+P+
Sbjct: 59 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 115
Query: 425 HQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
QM PRG YRY GR M D F G G ++P P +MG +P DA +PI AL+
Sbjct: 116 QQMLPRGSRGGYRYASGRGMPDNAFR-GVGGLVPSPYEMGR-MPLSDAGAPPQVPIGALA 173
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ALAN+ P+QQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALKAKV
Sbjct: 174 SALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKV 233
Query: 543 AEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AEAMEVLR+ QQQAN P DQLA+L+L++ +VS
Sbjct: 234 AEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS 266
>gi|218200922|gb|EEC83349.1| hypothetical protein OsI_28748 [Oryza sativa Indica Group]
Length = 252
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/213 (61%), Positives = 159/213 (74%), Gaps = 8/213 (3%)
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMP 424
P GFG+QQ L+PGMRP+ P+PNF +P+V QGQQ QRP GRR G G +QQ P+P+
Sbjct: 45 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 101
Query: 425 HQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
QM PRG YRY GR M D F G G ++P P +MG +P DA +PI AL+
Sbjct: 102 QQMLPRGSRGGYRYASGRGMPDNAFR-GVGGLVPSPYEMGR-MPLSDAGAPPQVPIGALA 159
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ALAN+ P+QQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALKAKV
Sbjct: 160 SALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKV 219
Query: 543 AEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AEAMEVLR+ QQQAN P DQLA+L+L++ +VS
Sbjct: 220 AEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS 252
>gi|222640326|gb|EEE68458.1| hypothetical protein OsJ_26852 [Oryza sativa Japonica Group]
Length = 252
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/213 (61%), Positives = 159/213 (74%), Gaps = 8/213 (3%)
Query: 366 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMP 424
P GFG+QQ L+PGMRP+ P+PNF +P+V QGQQ QRP GRR G G +QQ P+P+
Sbjct: 45 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 101
Query: 425 HQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
QM PRG YRY GR M D F G G ++P P +MG +P DA +PI AL+
Sbjct: 102 QQMLPRGSRGGYRYASGRGMPDNAFR-GVGGLVPSPYEMGR-MPLSDAGAPPQVPIGALA 159
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ALAN+ P+QQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALKAKV
Sbjct: 160 SALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKV 219
Query: 543 AEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
AEAMEVLR+ QQQAN P DQLA+L+L++ +VS
Sbjct: 220 AEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS 252
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 156/213 (73%), Gaps = 3/213 (1%)
Query: 11 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 70
LD +N + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSC
Sbjct: 1 LDTMNSDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 60
Query: 71 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKT 129
K+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE + K
Sbjct: 61 KVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 119
Query: 130 K-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 188
K F NV++KN E DE LK+IF ++G S VM D G+SK FGFV+FE +DA KA
Sbjct: 120 KEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKA 179
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V+ +NGK+ + R+ YVG K ER+ ELK +F
Sbjct: 180 VDEMNGKEINGRQVYVGPCPXKVERQTELKRKF 212
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 122/197 (61%), Gaps = 11/197 (5%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 27 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAER 85
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 86 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEDMD 135
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
DE+LKE+F++FG S KVM D SG SKG GFV+F E+A +A+ EMNGK I + +YV
Sbjct: 136 DERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYV 195
Query: 308 AVAQRKEERRARLQAQF 324
K ER+ L+ +F
Sbjct: 196 GPCPXKVERQTELKRKF 212
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 32 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 90
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
NG ++ + ++V + ++ER A L A+ + V +
Sbjct: 91 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYI 127
>gi|297791101|ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309270|gb|EFH39694.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 157/322 (48%), Positives = 189/322 (58%), Gaps = 59/322 (18%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 289
++ Q L IK + + D+ + L E T T+ + + +S+GSGFVAFSTPEEAS
Sbjct: 67 NQIQALVRVIK-VARTYRDDNVPSLIEEVITTTTHRSL----SLSRGSGFVAFSTPEEAS 121
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
RA+ EMNGKMIV+KPLYVA+AQRKE+ +ARLQ MRPV M P+V PRM MYPPG
Sbjct: 122 RAITEMNGKMIVTKPLYVALAQRKEDCKARLQ-----MRPVNMPPAVGPRMQMYPPGGPP 176
Query: 350 LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRG 409
+GQQ YGQ P P M P P P F QQ PG R G
Sbjct: 177 MGQQLFYGQGP-----------------PAMIP---PQPGFGY------QQQLVPGMRPG 210
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 469
P MP+ + P+ + Q G G+ RD
Sbjct: 211 GSP----------MPN--------FFMPMMQQGQQQQQQQQQQQ-----QQYGGGVHHRD 247
Query: 470 ASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 529
+ Q +PI AL+T LANA+PEQQRT+LGE+LYPLVEQLE ++AAKVTGMLLEMDQTEVL
Sbjct: 248 SPASQSVPIGALATQLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVL 307
Query: 530 HLLESPEALKAKVAEAMEVLRS 551
HLLESPEALKAKV EAM+VLRS
Sbjct: 308 HLLESPEALKAKVTEAMDVLRS 329
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 226/409 (55%), Gaps = 45/409 (11%)
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
M D GKS+ FGFV+FE +DA KA NG F W QKK ER+ ELK +FEQ
Sbjct: 1 MTDDSGKSRGFGFVSFERHEDAQKAD---NG--FLKENWI----QKKVERQAELKRKFEQ 51
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS
Sbjct: 52 MKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFS 110
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ M+ +A +VP P+
Sbjct: 111 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY--MQRMASVRAVP--NPVI 166
Query: 344 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNF-----FVPVVSQG 398
P Y APP+ GY +P + GA P P
Sbjct: 167 NP----------YQPAPPS--------GYFMTAIPQTQNRGAYYPAAGQMAQLRPSPRWP 208
Query: 399 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP-V 457
QG RP + ++ P P M M P R + + A + P V
Sbjct: 209 TQGVRPQHFQNMQSAMRSSAPRPQMFGSMRPSSQLPRMTSSQRVATQAMGPRAATTAPSV 268
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
+ G+ + + G P+T ++ LA A +Q+ +LGE L+PL++ + A K+T
Sbjct: 269 TANPVRGVSQYKYATGGQEPLT--TSMLAAAPLHEQKQMLGERLFPLIQAMHLSLAGKIT 326
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 561
GMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ N A
Sbjct: 327 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVTNSA 375
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 91/158 (57%), Gaps = 10/158 (6%)
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGML----INDKQVFVGHFLRKQERETVAIKT 129
TD SG+S+GFGFV FE E AQ A NG L I K RK E+ T
Sbjct: 2 TDDSGKSRGFGFVSFERHEDAQKAD---NGFLKENWIQKKVERQAELKRKFEQMKQDRMT 58
Query: 130 KFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
++ N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A K
Sbjct: 59 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATK 117
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
AV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 118 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 155
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++
Sbjct: 64 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATKAVTEM 122
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG ++ K ++V RK+ER+
Sbjct: 123 NGRIVATKPLYVALAQRKEERQ 144
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+R+SG GN+FIKNL+K+ID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ +D +G SKG GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ TK F NV++KN + DE L +FG +G I S VM D GKSK FGFV+FE
Sbjct: 182 ELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKA 207
+DA KAV+ +NGK+ + + YVG+A
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 151/270 (55%), Gaps = 16/270 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FSS G ILS ++ D + +S G+ V FE A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K V + +R+ ++ NVF+KNL+++ ++ L F +G I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+ D +G SK GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL
Sbjct: 128 CKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG-- 184
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
KE N+YIKN GD +DDE L LF FG I S KVM D G SKG GFV
Sbjct: 185 --TGTKEFT------NVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+F E+A +A+ EMNGK + K +YV A
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 26/193 (13%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S V RD +S + VNFE DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 247
+N FD +KG+ + M D + G+ N++IKNL +ID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTID 111
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Query: 308 AVAQRKEERRARL 320
+ ++ER A L
Sbjct: 171 GRFKSQKEREAEL 183
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 197/332 (59%), Gaps = 17/332 (5%)
Query: 5 SSAARALDVLNFTPLN-NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A + +D LN+T + + IR+M+S RDP RKSG N+F+K LD +I+ K L FS
Sbjct: 62 ADAEKVIDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFSK 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
G +LSCK+A D +G SKG+GFVQFE + + A++ +NG + D +V V F+R+ +RE
Sbjct: 122 CGRVLSCKVALDSAGNSKGYGFVQFETADGTKAALE-MNGSKLGDSEVVVAPFVRRVDRE 180
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+A K+ F N+++KN+ S T+ D+K I E+G + S + +K F V FE
Sbjct: 181 AMAAKS-FRNIYIKNITASATEADVKAIVEEFGKVDSLFLSEHARFPTK-FALVAFEEHQ 238
Query: 184 DAAKAVEALN-----GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
A +A+ ALN G + V +A KSER++E K ++ + G NLY
Sbjct: 239 AAVQAIAALNESEESGLTEKAVKLVVCRALSKSERDREKKK------AASLYQNHGRNLY 292
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IK+L D I D++L+E+F FG ITSC +M++P+G KG FV F + AS AL +NG
Sbjct: 293 IKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAALRSLNGH 352
Query: 299 MI--VSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ +KPLYV+ A++K+ R LQ + + MR
Sbjct: 353 PLEHSAKPLYVSHAEQKDMRIRLLQQRRAAMR 384
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 21/200 (10%)
Query: 132 NNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKA 188
+V+V +L D +E + +F + S V RD +S +G+VNF+ DA K
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSID 247
++ALN Y G A + +++ F ++++ + + G+ N+++K L +I+
Sbjct: 68 IDALN---------YTGIAPGR-----QIRVMF--SIRDPLQRKSGMNNVFVKKLDTAIN 111
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
++L+ FS+ G + SCKV D +G SKG GFV F T + ++A EMNG + + V
Sbjct: 112 AKELQAAFSKCGRVLSCKVALDSAGNSKGYGFVQFETA-DGTKAALEMNGSKLGDSEVVV 170
Query: 308 AVAQRKEERRARLQAQFSQM 327
A R+ +R A F +
Sbjct: 171 APFVRRVDREAMAAKSFRNI 190
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L+ SPEQQ+ LGE LY + LE AAK+TGMLLEM + E+ +L AL +K+ E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 545 AMEVLRSVAQQQANN 559
A VL QQ N
Sbjct: 534 ANAVL----QQHTGN 544
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 146/194 (75%), Gaps = 3/194 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 37 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 96
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 97 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 155
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 156 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 215
Query: 183 DDAAKAVEALNGKK 196
+DA KAV+ +NGK+
Sbjct: 216 EDAQKAVDEMNGKE 229
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 16/243 (6%)
Query: 57 LHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115
L++ FS G ILS ++ D + +S G+ +V F+ A+ A+D +N +I K V +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 175
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +G
Sbjct: 61 ----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG 115
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 235
FV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL + ++
Sbjct: 116 FVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT---------- 165
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EM
Sbjct: 166 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 225
Query: 296 NGK 298
NGK
Sbjct: 226 NGK 228
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 26/190 (13%)
Query: 148 LKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206
L + F G I S V RD +S + +VNF+ DA +A++ +N FD
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN---FD-------- 49
Query: 207 AQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSIDDEKLKELFSEFGTIT 262
+KG+ + M D + G+ N++IKNL SID++ L + FS FG I
Sbjct: 50 ---------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 100
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V + ++ER A L A
Sbjct: 101 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 159
Query: 323 QFSQMRPVAM 332
+ + V +
Sbjct: 160 RAKEFTNVYI 169
>gi|413918856|gb|AFW58788.1| hypothetical protein ZEAMMB73_448418 [Zea mays]
Length = 212
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/211 (63%), Positives = 156/211 (73%), Gaps = 6/211 (2%)
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q GF +QQQLVPGMRP G MPN++VPVV QGQQG RPG RRGAG Q P Q
Sbjct: 6 QPGFAFQQQLVPGMRPGGPHMPNYYVPVVQQGQQGPRPGIRRGAGAQGQQPVP--PFQQQ 63
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMG-AGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 485
+ PRG YRYP GRNM + P G AG M+ DMG G P RDA++ I L++AL
Sbjct: 64 ILPRGRMYRYPTGRNMPEAPAMPGVAGGMIQA-YDMG-GFPVRDAALSPAAQIGTLTSAL 121
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
ANA+PEQQRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESP+ALK+KVAEA
Sbjct: 122 ANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSKVAEA 181
Query: 546 MEVLRSVAQQQANN-PADQLASLSLNENLVS 575
M+VLR+VA QQ N P QLA+LSL E ++S
Sbjct: 182 MDVLRNVAHQQNPNLPTSQLAALSLTEGIMS 212
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 195/318 (61%), Gaps = 32/318 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LN++ ++ K RIM+S+RDP+ RK+ GN+F+KNL+K++D+ L+D FSSFGN
Sbjct: 176 AERALDTLNYSMIHGKPCRIMWSYRDPTKRKTNVGNVFVKNLEKAVDNAMLYDVFSSFGN 235
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ + G SKG+G+V FE ES+ AI+++NG L+ K +F F+ K ER V
Sbjct: 236 ILSCKVEYE-KGISKGYGYVHFETSESSGKAIERINGTLVLGKPIFCEPFVAKVERYKVE 294
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
N VF +N DES T E +++ ++G I + D GKSK G V F+N +DA
Sbjct: 295 -----NKVFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQ 349
Query: 187 K--AVEA----LNGK--KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
K AVEA +NGK FD + + K ER EL+ K+T D+ L+
Sbjct: 350 KLLAVEADSIQINGKPITFD-------RVKNKIERVTELR-------KKTTDQ----TLF 391
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
+ N+ +SI+ E +KE FS+ G I CK+++D SG +KG GF+ FS EA++AL +NG
Sbjct: 392 LSNIDESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALNGF 451
Query: 299 MIVSKPLYVAVAQRKEER 316
+K + V+++ KE++
Sbjct: 452 TFGNKQITVSLSSNKEQQ 469
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 31 RDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 89
R +RK T +F+ N+D+SI+ + + + FS G I+ CKI D SG++KG+GF+ F
Sbjct: 377 RVTELRKKTTDQTLFLSNIDESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFS 436
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
A A++ LNG +KQ+ V K+++ T
Sbjct: 437 EVSEANKALEALNGFTFGNKQITVSLSSNKEQQLT 471
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDPSGI-SKGSGFVAFSTPEEAS 289
Q +LY+ +L +++ L ELFS+ G I S V RD + S G +V F +A
Sbjct: 118 QLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAE 177
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
RAL +N MI KP + + R +R
Sbjct: 178 RALDTLNYSMIHGKPCRIMWSYRDPTKR 205
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 198/332 (59%), Gaps = 17/332 (5%)
Query: 5 SSAARALDVLNFTPLN-NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A + +D LN+T + + IR+M+S RDP RKSG N+F+K LD +I+ K L F+
Sbjct: 62 ADAEKVIDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTK 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
G +LSCK+A D +G SKG+GFVQFE E A+ A+D +NG + D +V V F+R+ +RE
Sbjct: 122 CGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDRE 180
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+A K+ F N+++KN+ + T+ D+K ++G + S + +K F V FE +
Sbjct: 181 VMAAKS-FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHE 238
Query: 184 DAAKAVEALN-----GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
A +A+ ALN G + V +A KSER++E K ++ + G NLY
Sbjct: 239 AAVQAIAALNESEESGLTEKAAKLVVCRALSKSERDREKKK------AASLYQNHGRNLY 292
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
+K+L D I D++L+E+F FG ITSC +M++P+G KG FV F + AS AL +NG+
Sbjct: 293 VKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQ 352
Query: 299 MI--VSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ KPLYV+ A++K+ R LQ + + MR
Sbjct: 353 PLEHSKKPLYVSHAEQKDMRIRLLQQRRAAMR 384
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 132 NNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKA 188
+V+V +L D +E + +F + S V RD +S +G+VNF+ DA K
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSID 247
++ALN Y G A + +++ F ++++ + + G+ N+++K L +I+
Sbjct: 68 IDALN---------YTGIAPGR-----QIRVMF--SIRDPLQRKSGMNNVFVKKLDTAIN 111
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
++L+ F++ G + SCKV D +G SKG GFV F T E A AL +MNG + + V
Sbjct: 112 AKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAAL-DMNGSKLGDSEVVV 170
Query: 308 AVAQRKEER 316
A R+ +R
Sbjct: 171 APFVRRVDR 179
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L+ SPEQQ+ LGE LY + LE AAK+TGMLLEM + E+ +L AL +K+ E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 545 AMEVLRSVAQQQANN 559
A VL QQ N
Sbjct: 534 ANAVL----QQHTGN 544
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/194 (56%), Positives = 146/194 (75%), Gaps = 4/194 (2%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSGTGNIF+KNLDK+ID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NGM + K V+VGHF++K ER
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN ++ T+ LK++F YG ITS +V D K++ F F+N+ +AD
Sbjct: 187 TN--DTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDAD 242
Query: 184 DAAKAVEALNGKKF 197
A A+E LNGKK
Sbjct: 243 SARNAMENLNGKKI 256
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 182/349 (52%), Gaps = 27/349 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
SA A++ +N L +K++ + + + + + N+++KN ++ L FS
Sbjct: 156 SAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSP 215
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLRKQER 122
+G I S + +D +++ F F+ + + +SA+NA++ LNG I D ++ + +K+E
Sbjct: 216 YGEITSMIVKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEES 273
Query: 123 ETVAIKTKFNNVFVKNLDESTTDE--DLKKIFGEYGTITSAVVMRD-------------- 166
E A + NN + +T++ + K E T A D
Sbjct: 274 EKAANENYNNNNTTSEENATTSETPAEKKTTDSESATNKDATPGEDQTSANGTTTTVTST 333
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-----WYVGKAQKKSEREQELKGQF 221
D K++ N NA A E + KK + YVG Q ++ R LK +F
Sbjct: 334 TDAKTEETPNDNTANAGINASITEKKDKKKSGESTETPNILYVGPHQSRARRHAILKAKF 393
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
+ E+ +K G+NLYIKNL DS++D+ LKELF +GTITS KVM+D SKG GFV
Sbjct: 394 DTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVC 453
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
F T EEA++A+ EM+ K+I KPLYV +A+++E R +RLQ +F +M P+
Sbjct: 454 FGTHEEANKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQQRF-RMNPI 501
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L E T+ L +IF G + S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 248
N Y +KGQ + M D K N+++KNL +ID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDN 117
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVG 177
Query: 309 VAQRKEER 316
+K ER
Sbjct: 178 HFIKKSER 185
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 552
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ + LK K+ EA+ VL++
Sbjct: 773 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEALVVLQNA 832
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/194 (56%), Positives = 146/194 (75%), Gaps = 4/194 (2%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSGTGNIF+KNLDK+ID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NGM + K V+VGHF++K ER
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN ++ T+ LK++F YG ITS +V D K++ F F+N+ +AD
Sbjct: 187 TN--DTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIVK--SDNKNRKFCFINYSDAD 242
Query: 184 DAAKAVEALNGKKF 197
A A+E LNGKK
Sbjct: 243 SARNAMENLNGKKI 256
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 191/370 (51%), Gaps = 28/370 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
SA A++ +N L +K++ + + + + + N+++KN ++ L + FS
Sbjct: 156 SAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSP 215
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLRKQER 122
+G I S + +D +++ F F+ + + +SA+NA++ LNG I D ++ + +K+E
Sbjct: 216 YGEITSMIVKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDHNYDPKKEEA 273
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
E A + N +N S T + KK E T A G+ ++ G +
Sbjct: 274 EKAANENSNNTTSEENAATSETPAE-KKTDSESATNKDATT---GEDQTSANGTTTTVTS 329
Query: 183 DDAAKAVEALN--------GKKFDDRE----------WYVGKAQKKSEREQELKGQFEQA 224
AK EA N +K D ++ YVG Q ++ R LK +F+
Sbjct: 330 TTDAKTEEATNDSTANAATAEKKDSKKSGESTETPNILYVGPHQSRARRHALLKAKFDTL 389
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 284
E+ +K G+NLYIKNL DS+DD+ LKELF +GTITS KVM+D SKG GFV F T
Sbjct: 390 NTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGT 449
Query: 285 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 344
EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ +F +M P+ + PM
Sbjct: 450 HEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHHMNNSLNSPMQY 508
Query: 345 PGPSGLGQQF 354
P QF
Sbjct: 509 PNSQTPQLQF 518
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 21/263 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L + + L++ F++ G++LS ++ D + +S G+ +V + N A+ A+
Sbjct: 15 TASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + L R+ K+ N+FVKNLD++ ++ L F +G I
Sbjct: 75 DTLNYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNI 130
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D GKSK +GFV++E+ + A +A+E +NG + + YVG KKSER
Sbjct: 131 LSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSER----- 185
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
A +T KF NLY+KN D++ + LKELFS +G ITS V D ++
Sbjct: 186 -----ATNDT--KF--TNLYVKNFPDTVTEAHLKELFSPYGEITSMIVKSDNK--NRKFC 234
Query: 279 FVAFSTPEEASRALAEMNGKMIV 301
F+ +S + A A+ +NGK I
Sbjct: 235 FINYSDADSARNAMENLNGKKIT 257
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L E T+ L +IF G + S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 248
N Y +KGQ + M D K N+++KNL +ID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDN 117
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVG 177
Query: 309 VAQRKEER 316
+K ER
Sbjct: 178 HFIKKSER 185
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 193/330 (58%), Gaps = 53/330 (16%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G+I+S ++ D S +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDA----------------------------------- 185
V+ D G S+ FGFV+FE + A
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGRVGSGKRPP 186
Query: 186 -----------AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 234
A+AV ++NGK+ + R YVG+AQK++ER+ ELK +FEQ +E V+++QG
Sbjct: 187 SGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQERVNRYQG 246
Query: 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 294
+NLY+KNL D IDDEKL++ FS +GTITS KVM + SG SKG GFV FS+PEEA++A+ E
Sbjct: 247 VNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE-SGHSKGFGFVCFSSPEEATKAVTE 305
Query: 295 MNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
MNG+++ +KPLYVA+AQRKEER+A L Q+
Sbjct: 306 MNGRIVSTKPLYVALAQRKEERKAILTNQY 335
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 154/276 (55%), Gaps = 62/276 (22%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GNIFIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV------------- 111
GNILSCK+ D G S+GFGFV FE +E+A AI +NGML+ND++V
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGRVGS 181
Query: 112 ---------------------------------FVGHFLRKQERETVAIKTKFN------ 132
+VG ++ ER++ +K KF
Sbjct: 182 GKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQS-ELKRKFEQIKQER 240
Query: 133 -------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
N++VKNLD+ DE L+K F YGTITSA VM + G SK FGFV F + ++A
Sbjct: 241 VNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE-SGHSKGFGFVCFSSPEEA 299
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
KAV +NG+ + YV AQ+K ER+ L Q+
Sbjct: 300 TKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 335
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 197/332 (59%), Gaps = 17/332 (5%)
Query: 5 SSAARALDVLNFTPLN-NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A + +D LN+T + IR+M+S RDP RKSG N+F+K LD +I+ K L F+
Sbjct: 62 ADAEKVIDALNYTGIAPGLQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTK 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
G +LSCK+A D +G SKG+GFVQFE E A+ A+D +NG + D +V V F+R+ +RE
Sbjct: 122 CGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDRE 180
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+A K+ F N+++KN+ + T+ D+K ++G + S + +K F V FE +
Sbjct: 181 VMAAKS-FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHE 238
Query: 184 DAAKAVEALN-----GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
A +A+ ALN G + V +A KSER++E K ++ + G NLY
Sbjct: 239 AAVQAIAALNESEESGLTEKAAKLVVCRALSKSERDREKKK------AASLYQNHGRNLY 292
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
+K+L D I D+KL+E+F FG ITSC +M++P+G KG FV F + AS AL +NG+
Sbjct: 293 VKHLPDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQ 352
Query: 299 MI--VSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ KPLYV+ A++K+ R LQ + + MR
Sbjct: 353 PLEHSKKPLYVSHAEQKDMRIRLLQQRRAAMR 384
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 21/189 (11%)
Query: 132 NNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKA 188
+V+V +L D +E + +F + S V RD +S +G+VNF+ DA K
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSID 247
++ALN Y G A L+ + ++++ + + G+ N+++K L +I+
Sbjct: 68 IDALN---------YTGIAPG-------LQIRVMFSIRDPLQRKSGMNNVFVKKLDTAIN 111
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
++L+ F++ G + SCKV D +G SKG GFV F T E A AL +MNG + + V
Sbjct: 112 AKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAAL-DMNGSKLGDSEVVV 170
Query: 308 AVAQRKEER 316
A R+ +R
Sbjct: 171 APFVRRVDR 179
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L+ SPEQQ+ LGE LY + LE AAK+TGMLLEM + E+ +L AL +K+ E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 545 AMEVLRSVAQQQANN 559
A VL QQ N
Sbjct: 534 ANAVL----QQHTGN 544
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/194 (56%), Positives = 146/194 (75%), Gaps = 4/194 (2%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSGTGNIF+KNLDK+ID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NGM + K V+VGHF++K ER
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN ++ T+ LK++F YG ITS +V D K++ F F+N+ +AD
Sbjct: 187 TN--DTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDAD 242
Query: 184 DAAKAVEALNGKKF 197
A A+E LNGKK
Sbjct: 243 SARNAMENLNGKKI 256
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 190/376 (50%), Gaps = 30/376 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
SA A++ +N L +K++ + + + + + N+++KN ++ L FS
Sbjct: 156 SAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSP 215
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLRKQER 122
+G I S + +D +++ F F+ + + +SA+NA++ LNG I D ++ + +K+E
Sbjct: 216 YGEITSMIVKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEET 273
Query: 123 ETVAIKTKFNNVFVKNL--------------DESTTDEDL---KKIFGEYGTITSAVVMR 165
E A + NN + E T++D + GT T+
Sbjct: 274 EKPANENSNNNTTTEENTTTSETPAEKKTPDSEPATNKDATPGEDQTSANGTTTTVTSTT 333
Query: 166 DG--DGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-----WYVGKAQKKSEREQELK 218
D D K++ N NA A E + KK + YVG Q ++ R LK
Sbjct: 334 DANPDSKTEETPNDNTANAGTNASTTEKKDNKKSGENTETPNILYVGPHQSRARRHAILK 393
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+F+ E+ +K G+NLYIKNL DS++D+ LKELF +GTITS KVM+D SKG G
Sbjct: 394 AKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFG 453
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP 338
FV F T EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ +F +M P+ +
Sbjct: 454 FVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHHINNAL 512
Query: 339 RMPMYPPGPSGLGQQF 354
P+ P QF
Sbjct: 513 NAPIQYPNSQTAQLQF 528
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L E T+ L +IF G + S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 248
N Y +KGQ + M D K N+++KNL +ID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDN 117
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVG 177
Query: 309 VAQRKEER 316
+K ER
Sbjct: 178 HFIKKSER 185
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ + LK K+ EA+
Sbjct: 781 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEAL 834
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 143/197 (72%), Gaps = 2/197 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 109 RALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 168
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D S+G+GFV +E E+A NAI +NGML+N+K+VFVGH + K++R++
Sbjct: 169 SCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFDE 228
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN+D TDE+ + +F YG ITSA + RD DG S+ FGFVNF+ AA
Sbjct: 229 MKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQHAA 288
Query: 187 KAVEALNGKKFDDREWY 203
KAVE L+ + + Y
Sbjct: 289 KAVEELHESELKGQTLY 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 159/315 (50%), Gaps = 31/315 (9%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ L+ S+ L + FS+ GN+ S ++ D + +S G+ +V + N + A+
Sbjct: 52 SASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERAL 111
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 112 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 167
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ--- 215
S V +D S+ +GFV++E A+ A A++ +NG ++++ +VG K +R+
Sbjct: 168 LSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFD 227
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + DE+ + +F +G ITS + RD G+S+
Sbjct: 228 EMKANF-------------TNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSR 274
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLY-VAVAQRKEERRARLQAQFSQMRPVA--- 331
G GFV F + A++A+ E++ + + LY + + + R + ++ S R
Sbjct: 275 GFGFVNFQEHQHAAKAVEELHESELKGQTLYPLELRKLASTRVSICTSRISMTRSTTSVS 334
Query: 332 ------MGPSVPPRM 340
M S+PPR+
Sbjct: 335 ARSLPRMELSLPPRL 349
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 146/196 (74%), Gaps = 4/196 (2%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSG GNIF+KNLDKSID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NG+ + K V+VGHF++K ER
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN +S T+ LK++F YG ITS +V D K++ F F+N+ +++
Sbjct: 187 TN--DTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKT--DNKNRKFCFINYADSE 242
Query: 184 DAAKAVEALNGKKFDD 199
A A+E LNGKK D
Sbjct: 243 SAKNAMENLNGKKITD 258
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
YVG Q ++ R LK +F+ E+ +K QG+NLYIKNL D+IDD+ LKELF +GTIT
Sbjct: 417 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 476
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S KVMRD SKG GFV F+ EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 477 SAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 536
Query: 323 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF 354
+F +M P+ + PM P P QF
Sbjct: 537 RF-RMHPIRHHMNNALNSPMQYPNPQSPQLQF 567
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 21/263 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L++ + L++ F++ G++ S ++ D + +S G+ +V + N A+ A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + L R+ K+ N+FVKNLD+S ++ L F +G I
Sbjct: 75 DTLNYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D GKSK +GFV++E+ + A +A+E +NG + + YVG KKSER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER----- 185
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
A +T KF NLY+KN DS+ + LKELFS +G ITS V D ++
Sbjct: 186 -----ATNDT--KF--TNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTDNK--NRKFC 234
Query: 279 FVAFSTPEEASRALAEMNGKMIV 301
F+ ++ E A A+ +NGK I
Sbjct: 235 FINYADSESAKNAMENLNGKKIT 257
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 248
N Y +KGQ + M D K N+++KNL SID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDN 117
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 309 VAQRKEER 316
+K ER
Sbjct: 178 HFIKKSER 185
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+++KNLD++ D+ LK++F YGTITSA VMRD +SK FGFV F ++A KAV +
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQF 221
+ K + + YVG A+K+ +R L+ +F
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD +ID + L + F +G I S K+ D QSKGFGFV F +E A A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 102 NGMLINDKQVFVGHFLRKQER 122
+ +IN K ++VG ++++R
Sbjct: 510 HLKIINGKPLYVGLAEKREQR 530
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 824 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 881
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 204/352 (57%), Gaps = 21/352 (5%)
Query: 5 SSAARALDVLNFTPLN-NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ A + +D LN+T + + IR+M+S RDP RKSG N+F+K LD +++ K L F+
Sbjct: 62 ADAEKVIDALNYTGITPGRQIRVMFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTK 121
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
G +LSCK+A D +G SKG+GFVQFE + A+ A++ ++G + D +V V FLR+ +RE
Sbjct: 122 CGRVLSCKVALDSAGNSKGYGFVQFETADGAKAALE-MDGSKLGDCEVVVAPFLRRVDRE 180
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+A K+ F N+++KNL + + D+K +G + S + +K F V FE +
Sbjct: 181 VMAAKS-FRNIYIKNLKATVAEADVKTTVETFGKVNSLFLSEHAPFPTK-FALVAFEEHE 238
Query: 184 DAAKAVEALN-----GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
A KA+ ALN G + V +A KSER++E K ++ + G NLY
Sbjct: 239 AAVKAIAALNESEESGLTEKAAKLVVCRALSKSERDREKKK------AASLYQNHGRNLY 292
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
+K+L D I D++L+E+F+ FG ITSC +M++P+G KG FV F + AS AL +NG
Sbjct: 293 VKHLPDDITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGH 352
Query: 299 MI--VSKPLYVAVAQRKEERRARLQAQFSQMRPVA-MGP---SVPPRMPMYP 344
+ K LYV+ A++K+ R LQ + + MR + M P + P + P +P
Sbjct: 353 SLDNSKKLLYVSQAEQKDMRIRLLQQRRAAMRHQSRMAPPMNTFPQQWPRHP 404
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 21/189 (11%)
Query: 132 NNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKA 188
+V+V +L D +E + +F + S V RD +S +G+VNF+ DA K
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADAEKV 67
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSID 247
++ALN Y G + +++ F ++++ + + G+ N+++K L +++
Sbjct: 68 IDALN---------YTGITPGR-----QIRVMF--SIRDPIQRKSGMNNVFVKKLDTAVN 111
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
++L+ F++ G + SCKV D +G SKG GFV F T + A AL EM+G + + V
Sbjct: 112 AKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETADGAKAAL-EMDGSKLGDCEVVV 170
Query: 308 AVAQRKEER 316
A R+ +R
Sbjct: 171 APFLRRVDR 179
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L+ SPEQQ+ LGE LY + LE AAK+TGMLLEM + E+ +L AL +K+ E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILGDQFALLSKIQE 533
Query: 545 AMEVLRSVAQQQANN 559
A VL QQ N
Sbjct: 534 ANVVL----QQHTGN 544
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 146/196 (74%), Gaps = 4/196 (2%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSG GNIF+KNLDKSID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NG+ + K V+VGHF++K ER
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN +S T+ LK++F +G ITS +V D K++ F F+N+ +++
Sbjct: 187 TN--DTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKT--DNKNRKFCFINYADSE 242
Query: 184 DAAKAVEALNGKKFDD 199
A A+E LNGKK D
Sbjct: 243 SAKNAMENLNGKKITD 258
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 8/168 (4%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
YVG Q ++ R LK +F+ E+ +K QG+NLYIKNL D+IDD+ LKELF +GTIT
Sbjct: 417 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 476
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S KVMRD SKG GFV F+ EEA+RA+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 477 SAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 536
Query: 323 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF-----LYGQAPPAIIP 365
+F +M P+ + PM P P QF YG+ P I P
Sbjct: 537 RF-RMHPIRHHMNNALNSPMQYPNPQSPQLQFNQNTLNYGR--PVITP 581
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 147/281 (52%), Gaps = 28/281 (9%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L++ + L++ F++ G++ S ++ D + +S G+ +V + N A+ A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + L R+ K+ N+FVKNLD+S ++ L F +G I
Sbjct: 75 DTLNYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D GKSK +GFV++E+ + A +A+E +NG + + YVG KKSER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER----- 185
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
A +T KF NLY+KN DS+ + LK+LFS FG ITS V D ++
Sbjct: 186 -----ATNDT--KF--TNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTDNK--NRKFC 234
Query: 279 FVAFSTPEEASRALAEMNGKMIVS----KPLYVAVAQRKEE 315
F+ ++ E A A+ +NGK I P Y A +KEE
Sbjct: 235 FINYADSESAKNAMENLNGKKITDDGQIDPTYDA---KKEE 272
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 248
N Y +KGQ + M D K N+++KNL SID+
Sbjct: 78 N---------YT-----------NIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDN 117
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 309 VAQRKEER 316
+K ER
Sbjct: 178 HFIKKSER 185
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 14/124 (11%)
Query: 111 VFVGHFLRKQERETVAIKTKFNNV-------------FVKNLDESTTDEDLKKIFGEYGT 157
++VG + R + +K KF+N+ ++KNLD++ D+ LK++F YGT
Sbjct: 416 LYVGPHQSRARRHAI-LKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGT 474
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
ITSA VMRD +SK FGFV F ++A +AV ++ K + + YVG A+K+ +R L
Sbjct: 475 ITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRL 534
Query: 218 KGQF 221
+ +F
Sbjct: 535 QQRF 538
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD +ID + L + F +G I S K+ D QSKGFGFV F +E A A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEM 509
Query: 102 NGMLINDKQVFVGHFLRKQER 122
+ +IN K ++VG ++++R
Sbjct: 510 HLKIINGKPLYVGLAEKREQR 530
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 823 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 880
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 146/196 (74%), Gaps = 4/196 (2%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSG GNIF+KNLDKSID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NG+ + K V+VGHF+++ ER
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN +S T+ LK++F YG ITS +V D K++ F F+N+ +++
Sbjct: 187 TN--DTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKT--DNKNRKFCFINYADSE 242
Query: 184 DAAKAVEALNGKKFDD 199
A A+E LNGKK D
Sbjct: 243 SAKNAMENLNGKKITD 258
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
YVG Q ++ R LK +F+ E+ +K QG+NLYIKNL D+IDD+ LKELF +GTIT
Sbjct: 408 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 467
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S KVMRD SKG GFV F+ EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 468 SAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 527
Query: 323 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF 354
+F +M P+ + PM P P QF
Sbjct: 528 RF-RMHPIRHHMNNALNSPMQYPNPQSPQLQF 558
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 140/263 (53%), Gaps = 21/263 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L++ + L++ F++ G++ S ++ D + +S G+ +V + N A+ A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + L R+ K+ N+FVKNLD+S ++ L F +G I
Sbjct: 75 DTLNYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D GKSK +GFV++E+ + A +A+E +NG + + YVG K+SER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSER----- 185
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
A +T KF NLY+KN DS+ + LK+LFS +G ITS V D ++
Sbjct: 186 -----ATNDT--KF--TNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTDNK--NRKFC 234
Query: 279 FVAFSTPEEASRALAEMNGKMIV 301
F+ ++ E A A+ +NGK I
Sbjct: 235 FINYADSESAKNAMENLNGKKIT 257
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+++KNLD++ D+ LK++F YGTITSA VMRD +SK FGFV F ++A KAV +
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQF 221
+ K + + YVG A+K+ +R L+ +F
Sbjct: 501 HLKIINGKPLYVGLAEKREQRLSRLQQRF 529
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD +ID + L + F +G I S K+ D QSKGFGFV F +E A A+ ++
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 102 NGMLINDKQVFVGHFLRKQER 122
+ +IN K ++VG ++++R
Sbjct: 501 HLKIINGKPLYVGLAEKREQR 521
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 814 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 871
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E +DA KAVE
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEK
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+A
Sbjct: 121 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 311 QRKEERRARL 320
QRKEER+A L
Sbjct: 180 QRKEERKAHL 189
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 117/189 (61%), Gaps = 15/189 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D ++L + FS FG LS K+ D +G+SKGFGFV +E E A A++++
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG I+ K +FVG +K ER+ +K KF N+++KNLD++ DE L
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQA-ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 121
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 122 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 180
Query: 209 KKSEREQEL 217
+K ER+ L
Sbjct: 181 RKEERKAHL 189
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 70/93 (75%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EM
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
NGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 95
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 146/196 (74%), Gaps = 4/196 (2%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A RALD LN+T + + R+M+SHRDPS+RKSGTGNIF+KNLDKSID+KAL DTFS
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+ATD G+SK +GFV +E++ESA+ AI+K+NG+ + K V+VG F++K ER
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERA 186
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
T TKF N++VKN +S T+ L+++F YG ITS +V D K++ F F+N+ +A+
Sbjct: 187 TN--DTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKM--DNKNRKFCFINYADAE 242
Query: 184 DAAKAVEALNGKKFDD 199
A A++ LNGKK D
Sbjct: 243 SAKNAMDNLNGKKITD 258
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
YVG Q ++ R LK +F+ E +K QG+NLYIKNL D IDD L+ELF FGTIT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S KVMRD SKG GFV F++ EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 537
Query: 323 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF 354
+F +M P+ + P PM P QF
Sbjct: 538 RF-RMHPIRHHMNNPLNTPMQYASPQSPQLQF 568
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 142/265 (53%), Gaps = 25/265 (9%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L++ + L++ F++ G++ S ++ D + +S G+ +V + N A+ A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 99 DKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
D LN I + ++ H R+ K+ N+FVKNLD+S ++ L F +G
Sbjct: 75 DTLNYTNIKGQPARLMWSH------RDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFG 128
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
I S V D GKSK +GFV++E+ + A +A+E +NG + + YVG KKSER
Sbjct: 129 NILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSER--- 185
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
A +T KF NLY+KN DS+ + L++LF+ +G ITS V D ++
Sbjct: 186 -------ATNDT--KF--TNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRK 232
Query: 277 SGFVAFSTPEEASRALAEMNGKMIV 301
F+ ++ E A A+ +NGK I
Sbjct: 233 FCFINYADAESAKNAMDNLNGKKIT 257
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 248
N Y +KGQ + M D K N+++KNL SID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDN 117
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG 177
Query: 309 VAQRKEER 316
+K ER
Sbjct: 178 PFIKKSER 185
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 59/89 (66%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+++KNLD+ D L+++F +GTITSA VMRD +SK FGFV F + ++A KAV +
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQF 221
+ K + + YVG A+K+ +R L+ +F
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD ID L + F FG I S K+ D QSKGFGFV F ++E A A+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 102 NGMLINDKQVFVGHFLRKQER 122
+ +IN K ++VG ++++R
Sbjct: 511 HLKIINGKPLYVGLAEKREQR 531
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 815 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 872
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/208 (52%), Positives = 148/208 (71%), Gaps = 3/208 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD +NF + K +RIM+S DPS+ KS NIFIKNL KSID+KAL+DTF +FGNIL
Sbjct: 22 RALDTMNFDVIKGKPVRIMWSQHDPSLHKSEVSNIFIKNLGKSIDNKALYDTFPAFGNIL 81
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ D +G SKG+GFV FE +E+ + AI+K++GML+ND +VFVG F ++ERE A
Sbjct: 82 SCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLNDFKVFVGQFKSRKEREAELGA 140
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+F NV++KN E DE LK +FG++G VM D GKSK FGFV+FE +DA
Sbjct: 141 RAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMTDESGKSKGFGFVSFERHEDAQ 200
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSERE 214
KAV +NGK+ + ++ Y+G+AQKK E++
Sbjct: 201 KAVNEMNGKELNGKQIYIGRAQKKVEQQ 228
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 140/242 (57%), Gaps = 15/242 (6%)
Query: 77 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFV 136
+ S G+ +V F+ + A+D +N +I K V + + Q ++ K++ +N+F+
Sbjct: 3 TCHSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRI---MWSQHDPSLH-KSEVSNIFI 58
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNL +S ++ L F +G I S V+ D +G SK +GFV+FE + +A+E ++G
Sbjct: 59 KNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGML 117
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+D + +VG+ + + ERE EL + ++ N+YIKN G+ +DDE LK+LF
Sbjct: 118 LNDFKVFVGQFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDEHLKDLFG 167
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
+FG KVM D SG SKG GFV+F E+A +A+ EMNGK + K +Y+ AQ+K E+
Sbjct: 168 KFGPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQ 227
Query: 317 RA 318
+
Sbjct: 228 QT 229
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 57/86 (66%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D + L D F FG L K+ TD SG+SKGFGFV FE E AQ A++++
Sbjct: 147 NVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEM 206
Query: 102 NGMLINDKQVFVGHFLRKQERETVAI 127
NG +N KQ+++G +K E++T I
Sbjct: 207 NGKELNGKQIYIGRAQKKVEQQTAQI 232
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNLG SID++ L + F FG I SCKV+ D +G SKG GFV F T E RA+ +M
Sbjct: 55 NIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKM 113
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+G ++ ++V + ++ER A L A+ + V +
Sbjct: 114 SGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYI 150
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 148/199 (74%), Gaps = 9/199 (4%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +N+ P+ + IRIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 64 ADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 123
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-- 122
GNILSCK++ + +G SKG+GFV FE +E+ AI+K+NGML+NDK+VFVG FL + ER
Sbjct: 124 GNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIK 182
Query: 123 ---ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 179
E V +F NV++KN + ++ L+ +F +YG + S VMRD DG S+ FGFV +
Sbjct: 183 KMGERV---RQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAY 239
Query: 180 ENADDAAKAVEALNGKKFD 198
++ ++A AVEA+NG++ +
Sbjct: 240 DSHEEAQAAVEAMNGQEIE 258
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 146/260 (56%), Gaps = 16/260 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I + + + +R+ K+ N+F+KNLD+S ++ L F +G I S
Sbjct: 73 MNYDPIKGRPIRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V + +G SK +GFV+FE + +A+E +NG +D++ +VGK +SER ++
Sbjct: 129 CKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKK---- 183
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
M E V +F N+YIKN GD D++ L+ +F ++G + S VMRD G S+G GFV
Sbjct: 184 ----MGERVRQFT--NVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFV 237
Query: 281 AFSTPEEASRALAEMNGKMI 300
A+ + EEA A+ MNG+ I
Sbjct: 238 AYDSHEEAQAAVEAMNGQEI 257
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F + G + S V RD +S + +VNF+ DA +A++
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 73 MNYDPIKGRPIRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 116
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV + +G SKG GFV F T E RA+ ++NG ++ K ++V
Sbjct: 117 YDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFL 175
Query: 312 RKEERRARLQAQFSQMRPVAM 332
+ ER ++ + Q V +
Sbjct: 176 TRSERIKKMGERVRQFTNVYI 196
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 194/331 (58%), Gaps = 36/331 (10%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F A RALD LN+T ++ K RIM+S+RDP+ RK+ GNIF+KNL+K +D+ L+DT
Sbjct: 234 FFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDT 293
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
FSSFGNILSCK+ + G SKG+G+V FE +SA+ AI+K+NG LI K + V F+ K
Sbjct: 294 FSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKV 352
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKK-IFGEYGTITSAVVMRDGDGKSKCFGFVNF 179
ER V N VF +N DES T E L++ + +G I S ++ D +GKSK G V F
Sbjct: 353 ERYKVE-----NKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEF 407
Query: 180 ENADDAAK--------AVEALNGK----------KFDDREWYVGKAQKKSEREQELKGQF 221
+N +DA K + ++G + + + + + + K ER F
Sbjct: 408 KNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER-------F 460
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
+ K+T D L+L+I N+ +SID + +KE F++ GTI K+++D + +KG GF++
Sbjct: 461 TEYRKKTTD----LSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFIS 516
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
FS +EA +AL +NG SK + V+ + +
Sbjct: 517 FSEIQEAQKALDSLNGFTFGSKQIQVSFSNK 547
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 21/208 (10%)
Query: 43 IFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+F +N D+SI + L S+ FG I SC + D +G+SKG G V+F+N+E AQ + +
Sbjct: 361 VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTES 420
Query: 102 NGMLI------------------NDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDES 142
++I N K + + K ER T KT ++F+ N+DES
Sbjct: 421 GALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDES 480
Query: 143 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 202
+ +K+ F ++GTI +++D + ++K FGF++F +A KA+++LNG F ++
Sbjct: 481 IDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQI 540
Query: 203 YVGKAQKKSER-EQELKGQFEQAMKETV 229
V + K + + +L G + K +
Sbjct: 541 QVSFSNKDNNQINNKLNGNSTKITKNII 568
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYG--TITSAVVMRDGDG-KSKCFGFVNFENADDAA 186
+ +++V +L + L ++F + G I S V RD + +S + +VNF N DA
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+A++ LN + + + + + + G N+++KNL +
Sbjct: 242 RALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG----------------NIFVKNLEKGV 285
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D+ L + FS FG I SCKV + GISKG G+V F T + A +A+ ++NG +I+ KP+
Sbjct: 286 DNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPIN 344
Query: 307 VAVAQRKEER 316
V K ER
Sbjct: 345 VERFVSKVER 354
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDPSGI-SKGSGFVAFSTPEEAS 289
Q +LY+ +L +++ L ELFS+ G I S V RD + + S G +V F +A
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
RAL +N ++ KP + + R +R
Sbjct: 242 RALDTLNYTLVHGKPCRIMWSYRDPTKR 269
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 185/574 (32%), Positives = 274/574 (47%), Gaps = 114/574 (19%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD L K IRI RDPS R+SG NI +K L ++D AL + FS +
Sbjct: 61 ADAEKALDQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKY 119
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +ATD G+S+G+ + +E +ESA +A+ +LNG+ I+D + V + E
Sbjct: 120 GRLTAIGLATDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITVERYQPHHREEQ 179
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENAD 183
+ ++ N++VKNLD S DE LK++F +G +TSA V RD G+ FG+V + +
Sbjct: 180 L---KQYTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-RDLAGRPTVGFGYVAYATHE 235
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKK--------SEREQELKGQFEQAMKETVDKFQGL 235
AAKAVE L DD+E + K K E + + + + ++ K+
Sbjct: 236 AAAKAVEEL-----DDKESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQHSKYP-- 288
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
NLY+KN D++ E+LK LF FG S VM D + +S+ GFV+F A++A+ E
Sbjct: 289 NLYVKNFDDTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSAAQAIQE 348
Query: 295 MNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP------------ 341
++G + +PL+V+ A RK+ AR Q MR + PRM
Sbjct: 349 LHGSTALGPRPLFVSYALRKD---ARRQT-LEDMR------NKQPRMRQPPMGGLMGGMM 398
Query: 342 ------MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV 395
M PP G F+ + P ++P G G MRP G P P
Sbjct: 399 GPQLSFMNPPAMFN-GMHFMNTRMP--MMPSTMGMG------GPMRPMG-PTP------- 441
Query: 396 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 455
Q RPG +R P M M P+ ++
Sbjct: 442 -MNQVRARPGPQR------------PPMQSMMAPQQQSH--------------------- 467
Query: 456 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
IP+ + GQ LST LA+ +P+QQ+ +LGE LY + + AAK
Sbjct: 468 -------PQIPQPPVAQGQ-----NLSTVLASMTPDQQKNVLGERLYNYIVRNNPSFAAK 515
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
VTGMLLEMD +E+L+LL++ L KV EA++VL
Sbjct: 516 VTGMLLEMDNSEILNLLDNHSLLDTKVQEALDVL 549
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 146/263 (55%), Gaps = 23/263 (8%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQN 96
+ + +I++ LD +++ + L+D F G + S ++ D Q S G+G+V F+N A+
Sbjct: 6 AASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEK 65
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+D+ G+ + K + + K +R+ ++ N+ VK L + LK++F +YG
Sbjct: 66 ALDQA-GVKLGTKHIRIA----KIQRDPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKYG 120
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
+T+ + D G+S+ + +++E + A AV LNG DD V + Q RE++
Sbjct: 121 RLTAIGLATDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITVERYQPH-HREEQ 179
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SK 275
LK Q NLY+KNL S+DDEKLKE+FS FG +TS KV RD +G +
Sbjct: 180 LK--------------QYTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-RDLAGRPTV 224
Query: 276 GSGFVAFSTPEEASRALAEMNGK 298
G G+VA++T E A++A+ E++ K
Sbjct: 225 GFGYVAYATHEAAAKAVEELDDK 247
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + ++ L F G + S V D KS +G+VNF+N DA KA++
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 250
G K + + K Q+ + + G+ N+ +K L ++D
Sbjct: 70 A-GVKLGTKHIRIAKIQRDPSKRRS-----------------GVTNIIVKKLPPTVDTYA 111
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LKE+FS++G +T+ + D G S+G +++ E A A+ E+NG I + V
Sbjct: 112 LKEMFSKYGRLTAIGLATDEKGESRGYARISYEKEESAVDAVRELNGVSI--DDCAITVE 169
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSV 336
+ + R Q++ + + PSV
Sbjct: 170 RYQPHHREEQLKQYTNLYVKNLDPSV 195
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/130 (78%), Positives = 116/130 (89%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
EQA E DKFQG NLY+KNL DSIDD+KLK+LFS+FG+ITSCKVMRDP+GIS+GSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 341
F+TPEEASRA+ EMNGKM+VSKPL+VA+AQRKE+RRARLQAQFSQ+RPVAM PSV RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 342 MYPPGPSGLG 351
MYPP G G
Sbjct: 121 MYPPCGPGHG 130
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
+Q VA K + N+++KNLD+S D+ LK++F ++G+ITS VMRD +G S+ GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
F ++A++A+ +NGK + +V AQ+K +R L+ QF Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQ 105
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
N+++KNLD SID L FS FG+I SCK+ D +G S+G GFV F E A AI +
Sbjct: 14 ANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 134
+NG ++ K +FV RK++R ++ +F+ +
Sbjct: 74 MNGKMVVSKPLFVALAQRKEDRRA-RLQAQFSQI 106
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 147/205 (71%), Gaps = 1/205 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RA D +N+ P+ + IM+S RDPS+R+S G+IFIKNL++SIDHKAL+DTFS+F
Sbjct: 63 ADAERAFDTMNYEPIKGQPCYIMWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ATD +GQSKG GFV F+ +E+A AI+K+NG L+N+++V VG F+ +++R
Sbjct: 123 GNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSH 182
Query: 125 VAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ N VFVKN E TDE L F ++G+I +AVVM+D +G SK FGFV+FE+ +
Sbjct: 183 TGFNQHYTNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHE 242
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQ 208
A+ AV+A++ + R+ Y +A
Sbjct: 243 AASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 139/271 (51%), Gaps = 16/271 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L D FS G +LS + D + +S G+ ++ F+ A+ A D
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I + ++ +R+ +++ ++F+KNL+ S + L F +G I S
Sbjct: 72 MNYEPIKGQPCYI----MWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D +G+SK GFV+F+ + A A+E +NG+ ++R+ +VGK + +R
Sbjct: 128 CKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHT---G 184
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
F Q V ++KN G+ DE L F +FG+I + VM+D G+SK GFV
Sbjct: 185 FNQHYTNVV--------FVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFV 236
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+F + E AS A+ ++ ++ + +Y + A
Sbjct: 237 SFESHEAASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 20/195 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 191
+++V +L + DL F + G + S V RD K S + ++ F+ DA +A +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + + Y+ +Q+ + G ++IKNL SID + L
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRRSRAGH----------------IFIKNLERSIDHKAL 115
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D +G SKG GFV F E A A+ ++NG+++ ++ ++V
Sbjct: 116 YDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVG--- 172
Query: 312 RKEERRARLQAQFSQ 326
+ R+ R F+Q
Sbjct: 173 KFIPRKDRSHTGFNQ 187
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 153/214 (71%), Gaps = 11/214 (5%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGF 85
M+S RDPS+RKSG GNIF+KNLD SID+KAL+DTFS FGNILSCK+A D +G SKG+G+
Sbjct: 1 MWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGY 60
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTD 145
V +E E+A AI K+NGMLI +VFVGHF ++Q+R + N +VKN+ TD
Sbjct: 61 VHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRPDA---DDWTNCYVKNIPTQWTD 117
Query: 146 EDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFENADDAAKAVEALNGKKFD----- 198
DL K F +G + SAVVM+D +++ FGFVN+E+++ A KAV+ALNGK +
Sbjct: 118 ADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGV 177
Query: 199 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 232
+ E YVGKAQK+SERE+EL+ +FEQ E ++K+
Sbjct: 178 ETELYVGKAQKRSERERELRNKFEQLKMERINKY 211
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 23/216 (10%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNF 179
+R+ K+ N+FVKNLD S ++ L F +G I S V D G SK +G+V++
Sbjct: 4 QRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHY 63
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
E A+ A +A+ +NG E +VG QK+ +R D N Y+
Sbjct: 64 ETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRP---------------DADDWTNCYV 108
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAEMNG 297
KN+ D L + F FG + S VM+D + ++G GFV + E A +A+ +NG
Sbjct: 109 KNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNG 168
Query: 298 KMI-----VSKPLYVAVAQRKEERRARLQAQFSQMR 328
K V LYV AQ++ ER L+ +F Q++
Sbjct: 169 KSYPAGEGVETELYVGKAQKRSERERELRNKFEQLK 204
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
P P+T S ALA ASPE Q+ ++GE LYPL+ + + + A K+TGMLLEMD E+LHLLES
Sbjct: 240 PEPLT--SAALAAASPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLES 297
Query: 535 PEALKAKVAEAMEVLRS 551
PEAL+AK++EA+ VL +
Sbjct: 298 PEALEAKISEALAVLEA 314
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 136/180 (75%), Gaps = 1/180 (0%)
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
L+++F E+G ITSA VM D +GKSK FGFV F++++ A AV+ALNGK F DR+ YVG+A
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 208 QKKSEREQELKGQFEQAMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
QKK+ER EL+ FE+ E ++ QG+NLY+KNL DSIDD +LK+ F FG ITS KV
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
M D + SKG GFV FS PEEA++A+ EMNGK+ SKPLYVA+AQRKE+R+A L +Q+ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 13/180 (7%)
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
L + F FG I S K+ D +G+SKGFGFV F++ E+A++A+ LNG + D+Q++VG
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 117 LRKQER-------------ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
+K ER E + T+ N++VKNLD+S D LK+ F +G ITSA V
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
M D + +SK FGFV F N ++A KAV +NGK + YV AQ+K +R+ L Q+ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD SID L F FGNI S K+ TD + +SKGFGFV F N E A A+ ++
Sbjct: 99 NLYVKNLDDSIDDTRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 158
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG + K ++V RK++R+
Sbjct: 159 NGKICGSKPLYVALAQRKEDRK 180
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 50/79 (63%)
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
KL+E+F EFG ITS KVM D +G SKG GFV F E A A+ +NGKM + LYV
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 310 AQRKEERRARLQAQFSQMR 328
AQ+K ER L++ F + R
Sbjct: 69 AQKKNERLDELRSHFEKQR 87
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 53/73 (72%)
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ LA+A +Q+ +LGE LYPLV ++ + A K+TGMLLE+D TE+LH+LES ++L K+
Sbjct: 396 STLASAPIAEQKQMLGERLYPLVHRMYPELAGKITGMLLEIDNTELLHMLESEDSLTTKI 455
Query: 543 AEAMEVLRSVAQQ 555
EAM VL+S Q
Sbjct: 456 EEAMNVLQSHKNQ 468
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 101/130 (77%), Positives = 113/130 (86%)
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
EQA E DKFQG NLY+KNL SIDD+KLK+LFS+FG+ITSCKVMRDP+GIS+GSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 341
F+TPEEASRA+ EMNGKM+V KPLYVA+AQRKE RRARLQAQFSQ+RPVAM PSV RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 342 MYPPGPSGLG 351
MYPP G G
Sbjct: 121 MYPPCGPGHG 130
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
+Q VA K + N+++KNLD S D+ LK++F ++G+ITS VMRD +G S+ GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
F ++A++A+ +NGK + YV AQ+K R L+ QF Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQ 105
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
N+++KNLD SID L FS FG+I SCK+ D +G S+G GFV F E A AI +
Sbjct: 14 ANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 134
+NG ++ K ++V RK+ R ++ +F+ +
Sbjct: 74 MNGKMVVGKPLYVALAQRKEVRRA-RLQAQFSQI 106
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 167/261 (63%), Gaps = 25/261 (9%)
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
F NV+VK+ + DE LK++F +YGTITS VM DGK + FGFV FEN + A AV+
Sbjct: 6 FTNVYVKDFGDELNDETLKEMFEKYGTITSHRVMIK-DGKGRGFGFVAFENPESAEHAVQ 64
Query: 191 ALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
LNGK+ + + YVG+AQKK+ER+ ELK +FEQ E + ++QG+NLY+KNL DSIDDE
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 124
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST-PEEASRALAEMNGKMIVSKPLYVA 308
+L++ FS FGTITS KVM + G SKG GFV FS EEA++A+ EMNG+++ SKPLYVA
Sbjct: 125 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 309 VAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
+AQR E+R+A L +Q+ Q MR MG ++ PG +G G P +
Sbjct: 184 LAQRTEDRKAHLASQYMQRMANMRMQHMG-------QIFQPGGNG-------GYYVPTLP 229
Query: 365 PPQAGFGYQQ---QLVPGMRP 382
PQ F Q + PG P
Sbjct: 230 QPQRFFSKQVSQIRTTPGWLP 250
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 120/199 (60%), Gaps = 18/199 (9%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++K+ ++ + L + F +G I S ++ G+ +GFGFV FEN ESA++A+ +L
Sbjct: 8 NVYVKDFGDELNDETLKEMFEKYGTITSHRVMIK-DGKGRGFGFVAFENPESAEHAVQEL 66
Query: 102 NGMLIND-KQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDED 147
NG + + K ++VG +K ER+ + +K +F N++VKNLD+S DE
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQ-MELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 125
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF-ENADDAAKAVEALNGKKFDDREWYVGK 206
L+K F +GTITSA VM + +G+SK FGFV F ++A++A KAV +NG+ + YV
Sbjct: 126 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVAL 184
Query: 207 AQKKSEREQELKGQFEQAM 225
AQ+ +R+ L Q+ Q M
Sbjct: 185 AQRTEDRKAHLASQYMQRM 203
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 205/383 (53%), Gaps = 56/383 (14%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LN++ + + RIM+S RDP+ RKS GNIF+KNLDK +D+ L DTFS FGN
Sbjct: 194 AERALDTLNYSQIMGRPCRIMWSLRDPTKRKSNVGNIFVKNLDKQVDNAMLFDTFSKFGN 253
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKI + G SKG+G+V FE +ES+ AI +NG ++ K + V F+ K ER
Sbjct: 254 ILSCKIEYE-KGVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEK 312
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+ K +F+KN+DE T E L+ +G I S ++ D +GKSK GFV F++ +DA
Sbjct: 313 NEHK---LFIKNIDELATVEQLQAELSRFGEIESCIIRLDNNGKSKGLGFVEFKSVEDAQ 369
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ------------- 233
+ ++ + + + + + K ER E + +Q +
Sbjct: 370 RLMDNPEPIQILSKPITIDRIKNKMERNIEHRQIKQQQANGNPNNNNNVVNNSTAPTVAA 429
Query: 234 ----------------------------GLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 265
L L+I N+ +SID E ++E F++ GTI K
Sbjct: 430 TTTTTTTTVDSNGNPTNSSNNNNSVAPTNLTLFIHNIDESIDKEVIREEFAKHGTILGIK 489
Query: 266 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA-RLQAQF 324
++++ +G ++G GF+++ST EEA+ A+ +MNG ++ SKPL V+ + RK ++R +LQ+
Sbjct: 490 IVQE-NGKNRGFGFLSYSTQEEANIAIEKMNGFILGSKPLSVSFSNRKYKKRMQQLQSNG 548
Query: 325 SQMRPVAMGPSVP---PRMPMYP 344
S PS P P +P+ P
Sbjct: 549 SN------DPSQPQPQPHIPLQP 565
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 133/281 (47%), Gaps = 31/281 (11%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGN--ILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
+++ +L ++ L + FS G + S + D + +S G+ +V F N A+ A+D
Sbjct: 140 LYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERALD 199
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN I + + LR + K+ N+FVKNLD+ + L F ++G I
Sbjct: 200 TLNYSQIMGRPCRIMWSLRDPTKR----KSNVGNIFVKNLDKQVDNAMLFDTFSKFGNIL 255
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQ 215
S + + G SK +G+V+FE + + +A++ +NG + E +V K ++ E+ +
Sbjct: 256 SCKIEYE-KGVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEKNE 314
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
L+IKN+ + E+L+ S FG I SC + D +G SK
Sbjct: 315 H-------------------KLFIKNIDELATVEQLQAELSRFGEIESCIIRLDNNGKSK 355
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
G GFV F + E+A R + I+SKP+ + + K ER
Sbjct: 356 GLGFVEFKSVEDAQRLMDNPEPIQILSKPITIDRIKNKMER 396
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDPSGI-SKGSGFVAFSTPEEAS 289
Q +LY+ +L +++ L ELFS+ G + S V RD S G +V F +A
Sbjct: 136 QYTSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAE 195
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERR 317
RAL +N I+ +P + + R +R
Sbjct: 196 RALDTLNYSQIMGRPCRIMWSLRDPTKR 223
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 171/254 (67%), Gaps = 7/254 (2%)
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S+FGNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +E
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 122 RETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
R ++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV
Sbjct: 60 R-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 118
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+E + A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +
Sbjct: 119 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 178
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG
Sbjct: 179 YIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNG 237
Query: 298 KMIVSKPLYVAVAQ 311
+++ SKPL+V + Q
Sbjct: 238 RVVGSKPLHVTLGQ 251
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 12/189 (6%)
Query: 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 214
+G I S V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER
Sbjct: 3 FGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERA 61
Query: 215 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 274
E++ T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG S
Sbjct: 62 AEVR---------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKS 112
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGP 334
KG GFV + T E A +A+ +++GK I K LYV AQ+K ER A L+ R
Sbjct: 113 KGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR--RFERLRLKEK 170
Query: 335 SVPPRMPMY 343
S PP +P+Y
Sbjct: 171 SRPPGVPIY 179
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 22/229 (9%)
Query: 4 LSSAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKA 56
L++A RA+ +N LNN+ + + R +R ++ N+F+KN+ ID +
Sbjct: 29 LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEK 88
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
L + F +G S K+ D SG+SKGFGFV++E E+AQ A+ L+G I+ K ++VG
Sbjct: 89 LKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 148
Query: 117 LRKQERETVAIKTKFNN------------VFVKNLDESTTDEDLKKIFGEYGTITSAVVM 164
+K ER + +++KNLDE+ DE LK+ F +G+I+ A VM
Sbjct: 149 QKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM 208
Query: 165 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKKS 211
+ G+ K FG V F + ++A KAV+ +NG+ + +V G+A+++
Sbjct: 209 ME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQARRRC 256
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 185/336 (55%), Gaps = 34/336 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD LN++ + + RIM+SHRDP+ RKS GNIF+KNL+K++D+ L DTFS++GN
Sbjct: 186 AERALDTLNYSLILGRPCRIMWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTFSTYGN 245
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCKI + G SKG+G+V FEN+ES++ AI K+NG ++ K + V F+ K ER
Sbjct: 246 ILSCKIEYE-KGISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEPFVSKVER--FK 302
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K N +F+KN+DE+ T E L++ +G I S + D GK K FV F+ ++DA
Sbjct: 303 EKKNENKLFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPKGLAFVEFKTSEDAQ 362
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQE-------------------------LKGQF 221
+E+ ++ + + K ER E
Sbjct: 363 ALLESTEAITILSKQITFDRIKNKVERSIEKNQKLINELNNNNNNHNNNNINHHINSSSL 422
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
+Q + + Q L L+I N+ +D E ++E F++ G I K+ S+G F+
Sbjct: 423 QQNGSTSQQQQQNLTLFINNIDMEVDKEIIREEFAKHGNILGIKIK------SRGFAFLT 476
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+ST EEA+ A+ +MNG + +K L V+++ ++E+R
Sbjct: 477 YSTQEEAAVAIEKMNGYVFGTKALVVSLSNSRKEKR 512
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 136/283 (48%), Gaps = 34/283 (12%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGN--ILSCKIATDGSG-QSKGFGFVQFENKESAQNAID 99
+++ +L + ++ L + FS G + S + D + +S G+ +V F N A+ A+D
Sbjct: 132 LYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAERALD 191
Query: 100 KLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
LN LI + ++ H R+ K+ N+FVKNL+++ + L F YG
Sbjct: 192 TLNYSLILGRPCRIMWSH------RDPTKRKSNVGNIFVKNLEKNVDNALLFDTFSTYGN 245
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSER 213
I S + + G SK +G+V+FEN + + +A+ +NG + E +V K ++ E+
Sbjct: 246 ILSCKIEYE-KGISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEPFVSKVERFKEK 304
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
+ E K L+IKN+ +++ E L++ S FG I SC + DP+G
Sbjct: 305 KNENK------------------LFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGK 346
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
KG FV F T E+A L I+SK + + K ER
Sbjct: 347 PKGLAFVEFKTSEDAQALLESTEAITILSKQITFDRIKNKVER 389
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDPSGI-SKGSGFVAFSTPEEA 288
Q +LY+ +L +++ L ELFS+ G + S V RD + + S G +V F +A
Sbjct: 127 LQFTSLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDA 186
Query: 289 SRALAEMNGKMIVSKPLYVAVAQRKEERR 317
RAL +N +I+ +P + + R +R
Sbjct: 187 ERALDTLNYSLILGRPCRIMWSHRDPTKR 215
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 179/327 (54%), Gaps = 39/327 (11%)
Query: 7 AARALDVLNFT--PLN-NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
A RA+DVL F PL NK IRIM+ DPS R++ GNIFIKNLDKSID+KAL+DTFS+
Sbjct: 230 AERAIDVLQFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFST 289
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG +LSCK+ATD G S G+ FV +++ A+ I K+NGML+N ++V+VG F ++ERE
Sbjct: 290 FGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGEFRPRRERE 349
Query: 124 -TVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
T + TKF NV+VKNLDES T E++ K+F YG ITS F+ E
Sbjct: 350 ATGELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGNITSI--------------FIPTET 395
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ E D+ +A ++ R+ + + A + + L +N
Sbjct: 396 VQEQQPHHE-------DEHRAPSEEASSEAGRQGGSSQEVKSAGADQSNAAPDLETSERN 448
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
D K E + ++ + +G FV F TPE+A+ A+ +NG +
Sbjct: 449 -----DGAKAPENRAHAQSVVRVR--------PRGFAFVNFETPEQAAAAVEALNGMELN 495
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMR 328
K LYV AQ+K ER A L+AQ Q+R
Sbjct: 496 GKTLYVGRAQKKAEREAMLRAQMEQLR 522
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 133/196 (67%), Gaps = 6/196 (3%)
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 229
+ + F FVNFE + AA AVEALNG + + + YVG+AQKK+ERE L+ Q EQ + +
Sbjct: 467 RPRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRM 526
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 289
K Q +NL++KNL D +D+ +L+E FS FGTITS ++MRD G+SKG GFVAFS P+EA
Sbjct: 527 QKLQDVNLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAI 586
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP--MYPPG- 346
+A+ EMN +++ KP+YVA+AQRK++RRA+++AQ + M M +PP + MY PG
Sbjct: 587 KAVTEMNQRIVGQKPIYVALAQRKDQRRAQIEAQRAAMMRAQMS-FLPPGLAASMYVPGT 645
Query: 347 --PSGLGQQFLYGQAP 360
P+ G + Y P
Sbjct: 646 GMPTPSGYPYPYAVHP 661
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 12/158 (7%)
Query: 81 KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV------------AIK 128
+GF FV FE E A A++ LNGM +N K ++VG +K ERE + K
Sbjct: 469 RGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQK 528
Query: 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 188
+ N+FVKNL + + L++ F +GTITS +MRD G SK FGFV F + D+A KA
Sbjct: 529 LQDVNLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKA 588
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
V +N + + YV AQ+K +R +++ Q M+
Sbjct: 589 VTEMNQRIVGQKPIYVALAQRKDQRRAQIEAQRAAMMR 626
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 25/242 (10%)
Query: 33 PSIRKSGTG-----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFV 86
P+ SGTG ++++ +L + + L + FSS G ++S ++ D + +S G+ +V
Sbjct: 163 PAASASGTGELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYV 222
Query: 87 QFENKESAQNAIDKL---NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDEST 143
F+N E A+ AID L G L +K + + + R + + N+F+KNLD+S
Sbjct: 223 NFQNPEDAERAIDVLQFYEGPLTKNKPIRI-MWKRSDPSQR---RNPEGNIFIKNLDKSI 278
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
++ L F +G + S + D G S + FV++++A+ A + +NG + ++ Y
Sbjct: 279 DNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVY 338
Query: 204 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTIT 262
VG+ + + ERE A E KF N+Y+KNL +S+ E++ +LF+ +G IT
Sbjct: 339 VGEFRPRRERE---------ATGELSTKF--TNVYVKNLDESLCTTEEVTKLFAPYGNIT 387
Query: 263 SC 264
S
Sbjct: 388 SI 389
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 101/187 (54%), Gaps = 34/187 (18%)
Query: 373 QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH 432
Q ++ M PA PMP +P ++ G P G GA P M ++M G
Sbjct: 808 QARMAARMGPASGPMPGVSMPAMASG----LPTGL-GA----------PGMGYKM---GG 849
Query: 433 AYRYPLGRNMQDF----PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANA 488
A R P G M P GAG+ +P MG + AS QP+ + L ANA
Sbjct: 850 AMRAPPGGTMAGMVAMSPMTAGAGNTVPSGA-MGNMMIGSAAS--QPLTVQML----ANA 902
Query: 489 SPEQQRTLLGESLYPLVEQL-----ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 543
P+QQ+ +LGE LYPLV Q +R+ A K+TGMLLEMD +EVLHL+ESPEAL+ KV
Sbjct: 903 DPKQQKQILGERLYPLVYQQLVREGKRELAPKITGMLLEMDNSEVLHLVESPEALQEKVE 962
Query: 544 EAMEVLR 550
EA+EVL+
Sbjct: 963 EALEVLQ 969
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 16/198 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L +++L ++F G + S V RD +S + +VNF+N +DA +A++
Sbjct: 177 SLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDV 236
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
L ++Y G K + ++ ++++ +G N++IKNL SID++ L
Sbjct: 237 L--------QFYEGPLTKN----KPIRIMWKRSDPSQRRNPEG-NIFIKNLDKSIDNKAL 283
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG + SCK+ D G S G FV + A +++MNG ++ + +YV +
Sbjct: 284 YDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGEFR 343
Query: 312 RKEERRA--RLQAQFSQM 327
+ ER A L +F+ +
Sbjct: 344 PRREREATGELSTKFTNV 361
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 7 AARALDVLNFTPLNNKSIRI----------------MYSHRDPSIRKSGTGNIFIKNLDK 50
AA A++ LN LN K++ + M R+ ++K N+F+KNL
Sbjct: 482 AAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQKLQDVNLFVKNLSD 541
Query: 51 SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ 110
+D L + FS FG I S +I D G SKGFGFV F + + A A+ ++N ++ K
Sbjct: 542 DVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMNQRIVGQKP 601
Query: 111 VFVGHFLRKQER 122
++V RK +R
Sbjct: 602 IYVALAQRKDQR 613
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALA 293
++LY+ +L + ++ L ELFS G + S +V RD + S G +V F PE+A RA+
Sbjct: 176 VSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAID 235
Query: 294 EM---NGKMIVSKPLYV 307
+ G + +KP+ +
Sbjct: 236 VLQFYEGPLTKNKPIRI 252
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 174/312 (55%), Gaps = 51/312 (16%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
+ A + LN + ++ + R+M S R+ + R SG GNI +KNL ++D+K+L+DTFS +GN
Sbjct: 90 CSAAFENLNHSKIDGTTYRLMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGN 149
Query: 67 ILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
++SC++ +G S KG+GFV ++ +A+ AI +NG ++ K+V H + K E+E++
Sbjct: 150 VISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESL 209
Query: 126 AIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+F NV+VKNL T++DL ++F G ++S +V RD K K FGFVNFE
Sbjct: 210 LSHNDQQHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFGFVNFE 269
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+DA +AV L+ K F
Sbjct: 270 LPEDAERAVNELHDKDF------------------------------------------- 286
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKM 299
+ + DE L F +GTITS K+M+D S G KG GFV FS+ +EA+RA+AEMNG+
Sbjct: 287 -FAEDVTDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEANRAVAEMNGRF 345
Query: 300 IVSKPLYVAVAQ 311
I SKP+YVA+AQ
Sbjct: 346 ISSKPIYVALAQ 357
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 123/258 (47%), Gaps = 16/258 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ L ID L + FGN+ S ++ D + QS G+ + F + A + L
Sbjct: 41 LYVGELAPHIDEAMLKE---HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFENL 97
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N I+ + L ERET + N+ +KNL + ++ L F +G + S
Sbjct: 98 NHSKIDGTT----YRLMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISC 153
Query: 162 VVMRDGDGKS-KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V G S K +GFVN++ A +A+ +NGK +E + K+E+E L
Sbjct: 154 RVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLLSHN 213
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+Q + T N+Y+KNL + ++ L ELFS G ++S V RD KG GFV
Sbjct: 214 DQQHCRFT-------NVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFGFV 266
Query: 281 AFSTPEEASRALAEMNGK 298
F PE+A RA+ E++ K
Sbjct: 267 NFELPEDAERAVNELHDK 284
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
Query: 154 EYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+G + S V RD +S + +NF D + A E LN K D + + SE
Sbjct: 58 HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFENLNHSKIDGTTYRL----MISE 113
Query: 213 REQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 271
RE T + G N+ +KNL ++D++ L + FS +G + SC+V +
Sbjct: 114 RE-------------TTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRVFNKLT 160
Query: 272 GIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320
G S KG GFV + T A RA++ +NGKM+ K ++ + K E+ + L
Sbjct: 161 GGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLL 210
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 136/190 (71%), Gaps = 3/190 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LNFT + + RIM+ RDP+ R++ GN+F+KNLDKSID+K L DTFS
Sbjct: 63 VADAERALDTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSL 122
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNI+SCKIATD G+S G+GF+ FE+ +SA+ AI +LNG ++ D+ ++VG F +K ER
Sbjct: 123 FGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERF 182
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ KT F NV+VK++ +S T++ L KIFG YG I+S V+ D G+ FGFVNFEN D
Sbjct: 183 SEKDKT-FTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPD 239
Query: 184 DAAKAVEALN 193
A AV AL+
Sbjct: 240 SAKAAVAALH 249
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 186/639 (29%), Positives = 283/639 (44%), Gaps = 136/639 (21%)
Query: 6 SAARALDVLNFTPLNNKSIRI--------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 57
SA A+ LN L ++ I + +S +D + N+++K++ KS L
Sbjct: 152 SAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLL 206
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F +G I S + +D G + FGFV FEN +SA+ A+ L+ L+ V
Sbjct: 207 YKIFGVYGKISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTPVGV------ 258
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
E ++ A + N D T+ + S+ +D G S
Sbjct: 259 ---ELDSTAETSADNEA---GADSETSSKQESGEASNKKQTASSETSKDSSGTS------ 306
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
N E A + + + YV +AQKK+ER+ LK Q E A+KE+ ++QG+NL
Sbjct: 307 NEEFAQNEDGSADKNVSADVQPNRLYVSRAQKKNERQVVLKSQHE-AVKESHQRYQGVNL 365
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
Y+KNL DSI++E L+ +F FGT++S + D SG+S+G GFV+F +P+EA++A+ EM+
Sbjct: 366 YVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHL 425
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQF------------------SQMRPVAMGPSVPPR 339
K++ KPLYV + +RKE+R RLQ + + M VPP+
Sbjct: 426 KLVRGKPLYVGLHERKEQRALRLQQRIRGGAVPPVLRPGAIPPGPPGVHGAPMQFGVPPQ 485
Query: 340 MPMYPPGPSGLGQQFLYGQA-------------------PPAI------IPPQAGFG--- 371
M P P+ +G+A P + +PPQ G
Sbjct: 486 MYFIPGNPNVAATAMPHGRAMVTGGFPNQNAMNNPWRPNPTRMPYTAGGVPPQMTGGPQM 545
Query: 372 --YQQQLVP--GMRPAGAP---------MPNFFVPVVSQGQQGQRPGGR----------- 407
Y ++ G+ P GA + VP V QG Q R GG
Sbjct: 546 TAYNGNVIQQNGVSPNGAANATGSVQNGVTGNAVPGV-QGAQNNRTGGNNQRIHNRHVQG 604
Query: 408 --RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRN---------MQDFPFDMGAGSMLP 456
+G P Q QM +G +++P MQ+ D G+++
Sbjct: 605 NGQGGRPGSHGHQV-----QQMQKQG--FKFPQNVKGSEMQRVDMMQNRQMDPSNGALVQ 657
Query: 457 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
P+ IP+ D + + LA ASP Q+ LLGE L+P++ Q + + A K+
Sbjct: 658 NPL-----IPQPD--------VPLTAATLAAASPSMQKQLLGERLFPIIAQFQPELAGKI 704
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555
TGM+LEMD E+L LL S +K KV EAM VL QQ
Sbjct: 705 TGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERAQQQ 743
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 136/263 (51%), Gaps = 20/263 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +LD + L++ F+S + S +I D + +S G+ +V + + A+ A+
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + + LR + + + NVFVKNLD+S ++ L F +G I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLR----DPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D +GKS +GF++FE+AD A +A+ LNG DR YVGK QKK+ER E
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKD 186
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
F N+Y+K++ S ++ L ++F +G I+S + D G + G
Sbjct: 187 KTF-------------TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFG 231
Query: 279 FVAFSTPEEASRALAEMNGKMIV 301
FV F P+ A A+A ++ ++
Sbjct: 232 FVNFENPDSAKAAVAALHNALVT 254
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +LD T+ L +IF ++S + RD +S + +VN+ + DA +A++ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N R + + + G N+++KNL SID++ L
Sbjct: 74 NFTCIRGRPCRIMWCLRDPASRRNNDG----------------NVFVKNLDKSIDNKTLF 117
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCK+ D G S G GF+ F + A A++ +NG ++ +P+YV Q+
Sbjct: 118 DTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQK 177
Query: 313 KEERRARLQAQFSQM 327
K ER + F+ +
Sbjct: 178 KAERFSEKDKTFTNV 192
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 136/190 (71%), Gaps = 3/190 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LNFT + + RIM+ RDP+ R++ GN+F+KNLDKSID+K L DTFS
Sbjct: 63 VADAERALDTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSL 122
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNI+SCKIATD G+S G+GF+ FE+ +SA+ AI +LNG ++ D+ ++VG F +K ER
Sbjct: 123 FGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERF 182
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ KT F NV+VK++ +S T++ L KIFG YG I+S V+ D G+ FGFVNFEN D
Sbjct: 183 SEKDKT-FTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPD 239
Query: 184 DAAKAVEALN 193
A AV AL+
Sbjct: 240 SAKAAVAALH 249
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 178/341 (52%), Gaps = 41/341 (12%)
Query: 6 SAARALDVLNFTPLNNKSIRI--------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 57
SA A+ LN L ++ I + +S +D + N+++K++ KS L
Sbjct: 152 SAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLL 206
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F +G I S + +D G + FGFV FEN +SA+ A+ L+ L+ V
Sbjct: 207 YKIFGVYGKISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTPVGV------ 258
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
E ++ A +T +N + + S+ E G ++ G+ G
Sbjct: 259 ---ELDSTA-ETPVDNEAGADSETSSKQES--------GEASNKKQTASGEASKDSSGTS 306
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
N E+A + + + YV +AQKK+ER+ LK Q E A+KE+ ++QG+NL
Sbjct: 307 NEESAQNEDGSADKNVSADVQPNRLYVSRAQKKNERQVVLKSQHE-AVKESHQRYQGVNL 365
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
Y+KNL DSI++E L+ +F FGT++S + D SG+S+G GFV+F +P+EA++A+ EM+
Sbjct: 366 YVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHL 425
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP 338
K++ KPLYV + +RKE+R RLQ + G +VPP
Sbjct: 426 KLVRGKPLYVGLHERKEQRALRLQQRIR-------GGAVPP 459
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 136/263 (51%), Gaps = 20/263 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +LD + L++ F+S + S +I D + +S G+ +V + + A+ A+
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN I + + LR + + + NVFVKNLD+S ++ L F +G I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLR----DPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S + D +GKS +GF++FE+AD A +A+ LNG DR YVGK QKK+ER E
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKD 186
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
F N+Y+K++ S ++ L ++F +G I+S + D G + G
Sbjct: 187 KTF-------------TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFG 231
Query: 279 FVAFSTPEEASRALAEMNGKMIV 301
FV F P+ A A+A ++ ++
Sbjct: 232 FVNFENPDSAKAAVAALHNALVT 254
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V +LD T+ L +IF ++S + RD +S + +VN+ + DA +A++ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N R + + + G N+++KNL SID++ L
Sbjct: 74 NFTCIRGRPCRIMWCLRDPASRRNNDG----------------NVFVKNLDKSIDNKTLF 117
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCK+ D G S G GF+ F + A A++ +NG ++ +P+YV Q+
Sbjct: 118 DTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQK 177
Query: 313 KEERRARLQAQFSQM 327
K ER + F+ +
Sbjct: 178 KAERFSEKDKTFTNV 192
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%)
Query: 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 552
Q+ LLGE L+P++ Q + + A K+TGM+LEMD E+L LL S +K KV EAM VL
Sbjct: 681 QKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERA 740
Query: 553 AQQ 555
QQ
Sbjct: 741 QQQ 743
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 134/178 (75%), Gaps = 3/178 (1%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 105
KNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 106 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG+YG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
M D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTELKRKF 177
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 11/188 (5%)
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLD+S ++ L F +G I S V+ D +G SK +GFV FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LKE+F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKEVFG 109
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
++G S KVM D SG SKG GFV+F E+A +A+ MNGK + K +YV AQ+K ER
Sbjct: 110 KYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVER 169
Query: 317 RARLQAQF 324
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L +
Sbjct: 47 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 106
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F +G LS K+ TD SG+SKGFGFV FE E AQ A+D +NG +N K ++VG +K
Sbjct: 107 VFGKYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKK 166
Query: 120 QERETVAIKTKF 131
ER+T +K KF
Sbjct: 167 VERQT-ELKRKF 177
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 216/407 (53%), Gaps = 64/407 (15%)
Query: 187 KAVEALNGKKFD---DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
K E+ G ++D + GK+ KK+ER+Q L+ E+ E + K G N+YIKN+
Sbjct: 6 KCQESKRGLEWDRSGSENFVRGKSSKKAERKQYLQLLHEEKRNEIITKSNGSNVYIKNIS 65
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
D +DD+ L+E F+EFG ITS K+MRD GISKG GFV +STP+EA A++ M G M K
Sbjct: 66 DEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSSMRGVMFYGK 125
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVA--MGPSVPPRMP---------MYPPGPSGLGQ 352
PLYVA+AQRKE+R+ARL+ +F+++ +A P +P P +P GPS G
Sbjct: 126 PLYVAIAQRKEDRKARLEQRFAELATMAGTASPVIPTGYPHVYFAHPSTHFPQGPSRQG- 184
Query: 353 QFLYGQAPPAIIPPQAGFG--YQQQLVP---GMRPAGAP-MPNFFVPVVSQGQQGQRPGG 406
F+Y P G G ++Q + P ++ AP MPN P + +G+ G
Sbjct: 185 -FMY---------PPIGLGQEWRQNVYPSPHSIQQIHAPLMPN--TPRQYRNNRGRMTGN 232
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG 464
+ PH + H A + + + Q F G +P P + G
Sbjct: 233 -------------MMTFPHAVNYVSHPQAAKDFMSMSRQQF----GHAKYIP-PDVVSNG 274
Query: 465 IPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 520
+ ++ PI+++ ++ LA A P+QQR +LG +YPLVE+ D A+K+TGML
Sbjct: 275 L-----AIHHSGPISSVNDSFASLLAAAPPDQQRDMLGNRIYPLVERYHPDLASKITGML 329
Query: 521 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASL 567
LE+D + +L +L S + L AKV E ++ L+ QQ N + L +L
Sbjct: 330 LELDTSYLLSMLNSQDTLAAKVNECVQALQ--GQQSTKNKPEDLEAL 374
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 175
L +++R + K+ +NV++KN+ + D+ L++ F E+G ITS +MRD G SK FG
Sbjct: 41 LLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFG 100
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
FV + D+A AV ++ G F + YV AQ+K +R+ L+ +F +
Sbjct: 101 FVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQRFAE 148
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 90
R+ I KS N++IKN+ +D L + F+ FGNI S KI D G SKGFGFV +
Sbjct: 47 RNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYST 106
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
+ A+ A+ + G++ K ++V RK++R+
Sbjct: 107 PDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRK 139
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 135/178 (75%), Gaps = 3/178 (1%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 105
KNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
M D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 118/188 (62%), Gaps = 11/188 (5%)
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFG 109
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
+FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 317 RARLQAQF 324
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L +
Sbjct: 47 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 106
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 107 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 166
Query: 120 QERETVAIKTKF 131
ER+T +K KF
Sbjct: 167 VERQT-ELKRKF 177
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 133/178 (74%), Gaps = 3/178 (1%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 105
KNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
M D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ E K +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEXKRKF 177
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 11/188 (5%)
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFG 109
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
+FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 317 RARLQAQF 324
+ + +F
Sbjct: 170 QTEXKRKF 177
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L D
Sbjct: 47 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 106
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 107 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 166
Query: 120 QERET 124
ER+T
Sbjct: 167 VERQT 171
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 130/175 (74%), Gaps = 3/175 (1%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 105
KNLDKSID+KAL+D FS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG +G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
M D GKSK FGFV+FE +DA KAV +NGK+ + ++ YVG+AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELK 174
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 115/185 (62%), Gaps = 11/185 (5%)
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFG 109
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVER 169
Query: 317 RARLQ 321
+ L+
Sbjct: 170 QTELK 174
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L +
Sbjct: 47 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 106
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+ ++NG +N KQ++VG +K
Sbjct: 107 LFGXFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKK 166
Query: 120 QERET 124
ER+T
Sbjct: 167 VERQT 171
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 94/192 (48%), Positives = 137/192 (71%), Gaps = 3/192 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LN++P+N + R+M+SHRDP++R+SG GN+++KNLD++ID+KAL+DTFS
Sbjct: 100 VADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSL 159
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A G+S+GFGFV FE+ ESA+ AI KLNGM I +K V+V F + +R
Sbjct: 160 FGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRS 219
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ K F NV++K++ S T+E +++ FG +G ITS + D G+ F FVNF +
Sbjct: 220 DGSPK-NFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFE 276
Query: 184 DAAKAVEALNGK 195
A AVE ++G+
Sbjct: 277 QARAAVEDMDGE 288
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 20/258 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
+++ +L ++ L++ F+ G + S ++ D + +S G+ ++ F N A+ A+D
Sbjct: 50 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 109
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN IN + L R+ ++ NV+VKNLD + ++ L F +G I S
Sbjct: 110 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 165
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V DGKS+ FGFV+FE+ + A A+ LNG + ++ YV + +K ++R
Sbjct: 166 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPKN 225
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
F N+YIK++ S +EK++E F FG ITS + DP G + FV
Sbjct: 226 F-------------TNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--RRFAFV 270
Query: 281 AFSTPEEASRALAEMNGK 298
F+ E+A A+ +M+G+
Sbjct: 271 NFAEFEQARAAVEDMDGE 288
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 188
+F +++ +L + L ++F G + S V RD KS + ++NF N DA +A
Sbjct: 47 QFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 106
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
++ LN + R + + + + G N+Y+KNL +ID+
Sbjct: 107 LDTLNYSPINGRPCRLMWSHRDPALRRSGAG----------------NVYVKNLDRNIDN 150
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV P G S+G GFV F + E A A+A++NG I K +YVA
Sbjct: 151 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 210
Query: 309 VAQRKEER 316
++ +R
Sbjct: 211 QFKKTADR 218
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 130/175 (74%), Gaps = 3/175 (1%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 105
KNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
M D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 174
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFG 109
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER
Sbjct: 110 XXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 317 RARLQ 321
+ L+
Sbjct: 170 QTELK 174
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L +
Sbjct: 47 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 106
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K
Sbjct: 107 LFGXXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 166
Query: 120 QERET 124
ER+T
Sbjct: 167 VERQT 171
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|293331471|ref|NP_001168063.1| uncharacterized protein LOC100381794 [Zea mays]
gi|223945787|gb|ACN26977.1| unknown [Zea mays]
Length = 183
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/189 (60%), Positives = 138/189 (73%), Gaps = 11/189 (5%)
Query: 391 FVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ--MPPRGHAYRYPLGRNMQDFPFD 448
+P+V QGQQ QRP GRR G QQP+P+ Q P G YRYP GR M D P
Sbjct: 1 MMPMVQQGQQPQRPAGRRAGG----MQQPMPMGGQQQVFPRGGRGYRYPTGRGMPD-PGM 55
Query: 449 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 508
G+++P +MG G+P R+A+ QP+PI AL+TALANA P+QQR +LGE+LYPLVEQL
Sbjct: 56 HSVGAVMPPSYEMG-GMPMREAAP-QPVPIGALATALANAPPDQQRLMLGENLYPLVEQL 113
Query: 509 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA--DQLAS 566
ER+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLRS Q +N + QLA+
Sbjct: 114 EREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLAN 173
Query: 567 LSLNENLVS 575
LSLN+ +VS
Sbjct: 174 LSLNDGVVS 182
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 192 bits (488), Expect = 4e-46, Method: Composition-based stats.
Identities = 98/178 (55%), Positives = 130/178 (73%), Gaps = 3/178 (1%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 105
KNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 106 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
+ND++VFVG F ++ERE A +F NV++KN + DE LK++F +YG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
M D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 149 bits (375), Expect = 5e-33, Method: Composition-based stats.
Identities = 81/188 (43%), Positives = 120/188 (63%), Gaps = 11/188 (5%)
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLD+S ++ L F +G I S V+ D +G SK + FV+FE D A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+DR+ +VG+ + + ERE EL + ++ N+YIKN GD +DDE+LKE+FS
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGDDMDDERLKEMFS 109
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
++G S KVM D +G SKG GFV+F E+A++A+ EMNGK + K ++V AQ+K ER
Sbjct: 110 KYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVER 169
Query: 317 RARLQAQF 324
+A L+ +F
Sbjct: 170 QAELKRKF 177
Score = 86.3 bits (212), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN +D + L +
Sbjct: 47 AADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKE 106
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
FS +G LS K+ TD +G+SKGFGFV FE E A A++++NG +N K VFVG +K
Sbjct: 107 MFSKYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKK 166
Query: 120 QERETVAIKTKF 131
ER+ +K KF
Sbjct: 167 VERQA-ELKRKF 177
Score = 68.9 bits (167), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
+ + ++V + ++ER A L A+ + V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNV 90
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 194/350 (55%), Gaps = 19/350 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD + L ++ +RI RDPS R+SG NI +K L KS+D AL + FS F
Sbjct: 60 ADAEKALDQAG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKF 118
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +A D G+S+G+ + FE +ESA +A+ +++GM ++ + + V + + E
Sbjct: 119 GRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDEL 178
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENAD 183
+ +F N++VKNLD + TDE L+ F +YG ++SA V G +S+ G+V F+ +
Sbjct: 179 L---KQFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHE 235
Query: 184 DAAKAVEALNGKKFDDREWYVGKA------QKKSEREQELKGQFEQAMKETVDKFQGLNL 237
DAA+AVE LNGK E + KA + RE+ + + Q + + NL
Sbjct: 236 DAARAVEELNGK-----ECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNL 290
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 296
Y+K D++ E+L+ELF +G S VM D +G+S+ GFV+ AS+A+ E+N
Sbjct: 291 YVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELN 350
Query: 297 GKMIVS-KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 345
G +S +PL+V A RK+ RR L+ + Q R V P P M PP
Sbjct: 351 GSTFLSPRPLFVTYALRKDARRQNLEERSKQFR-VRQNPMGGPGMGAMPP 399
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 140/262 (53%), Gaps = 28/262 (10%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
+I++ LD + + L+D F G + S ++ D + Q S G+G+V F++ A+ A+D+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
L + +LR K +R+ ++ NN+ VK L +S LK++F ++G +
Sbjct: 69 AGSKLGS-------RYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRL 121
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
T+ + D G+S+ + ++FE + A AV ++G + D + V + Q ++ EL
Sbjct: 122 TAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQ--AQHRDELL 179
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--G 276
QF NLY+KNL ++ DEKL+ F+++G ++S KV RD + G
Sbjct: 180 KQFT-------------NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAG 225
Query: 277 SGFVAFSTPEEASRALAEMNGK 298
G+VAF E+A+RA+ E+NGK
Sbjct: 226 LGYVAFQKHEDAARAVEELNGK 247
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 51/69 (73%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L++L+SP L +
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDS 579
Query: 541 KVAEAMEVL 549
K+AEA +VL
Sbjct: 580 KIAEAQDVL 588
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V LD ++ L F G +TS V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 192 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G K R + K Q+ S+R + N+ +K L S+D
Sbjct: 69 A-GSKLGSRYLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKSVDTYA 110
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LKE+FS+FG +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQA--IVVE 168
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSV 336
+ + + R L QF+ + + P+V
Sbjct: 169 RYQAQHRDELLKQFTNLYVKNLDPAV 194
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 194/350 (55%), Gaps = 19/350 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD + L ++ +RI RDPS R+SG NI +K L KS+D AL + FS F
Sbjct: 60 ADAEKALDQAG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKF 118
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +A D G+S+G+ + FE +ESA +A+ +++GM ++ + + V + + E
Sbjct: 119 GRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDEL 178
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENAD 183
+ +F N++VKNLD + TDE L+ F +YG ++SA V G +S+ G+V F+ +
Sbjct: 179 L---KQFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHE 235
Query: 184 DAAKAVEALNGKKFDDREWYVGKA------QKKSEREQELKGQFEQAMKETVDKFQGLNL 237
DAA+AVE LNGK E + KA + RE+ + + Q + + NL
Sbjct: 236 DAARAVEELNGK-----ECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNL 290
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 296
Y+K D++ E+L+ELF +G S VM D +G+S+ GFV+ AS+A+ E+N
Sbjct: 291 YVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELN 350
Query: 297 GKMIVS-KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 345
G +S +PL+V A RK+ RR L+ + Q R V P P M PP
Sbjct: 351 GSTFLSPRPLFVTYALRKDARRQNLEERSKQFR-VRQNPMGGPGMGAMPP 399
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 140/262 (53%), Gaps = 28/262 (10%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
+I++ LD + + L+D F G + S ++ D + Q S G+G+V F++ A+ A+D+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
L + +LR K +R+ ++ NN+ VK L +S LK++F ++G +
Sbjct: 69 AGSKLGS-------RYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRL 121
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
T+ + D G+S+ + ++FE + A AV ++G + D + V + Q ++ EL
Sbjct: 122 TAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQ--AQHRDELL 179
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--G 276
QF NLY+KNL ++ DEKL+ F+++G ++S KV RD + G
Sbjct: 180 KQFT-------------NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAG 225
Query: 277 SGFVAFSTPEEASRALAEMNGK 298
G+VAF E+A+RA+ E+NGK
Sbjct: 226 LGYVAFQKHEDAARAVEELNGK 247
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 51/69 (73%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L++L+SP L +
Sbjct: 511 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDS 570
Query: 541 KVAEAMEVL 549
K+AEA +VL
Sbjct: 571 KIAEAQDVL 579
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V LD ++ L F G +TS V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 192 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G K R + K Q+ S+R + N+ +K L S+D
Sbjct: 69 A-GSKLGSRYLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKSVDTYA 110
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LKE+FS+FG +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQA--IVVE 168
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSV 336
+ + + R L QF+ + + P+V
Sbjct: 169 RYQAQHRDELLKQFTNLYVKNLDPAV 194
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+S A LDV F + R+ + + S N+++K D ++ + L + F
Sbjct: 251 ISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQR 310
Query: 64 FGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG-MLINDKQVFVGHFLRKQE 121
+G +S + D +G S+ FGFV +++ +A AI +LNG ++ + +FV + LRK
Sbjct: 311 YGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVTYALRKDA 370
Query: 122 R 122
R
Sbjct: 371 R 371
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 194/350 (55%), Gaps = 19/350 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD + L ++ +RI RDPS R+SG NI +K L KS+D AL + FS F
Sbjct: 60 ADAEKALDQAG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKF 118
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +A D G+S+G+ + FE +ESA +A+ +++GM ++ + + V + + E
Sbjct: 119 GRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDEL 178
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENAD 183
+ +F N++VKNLD + TDE L+ F +YG ++SA V G +S+ G+V F+ +
Sbjct: 179 L---KQFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAAQSEAGLGYVAFQKHE 235
Query: 184 DAAKAVEALNGKKFDDREWYVGKA------QKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+AA+AVE LNGK E + KA + RE+ + + Q + + NL
Sbjct: 236 NAARAVEELNGK-----ECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNL 290
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 296
Y+K D++ E+L+ELF +G S VM D +G+S+ GFV+ AS+A+ E+N
Sbjct: 291 YVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELN 350
Query: 297 GKMIVS-KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 345
G +S +PL+V A RK+ RR L+ + Q R V P P M PP
Sbjct: 351 GSTFLSPRPLFVTYALRKDARRQNLEERSKQFR-VRQNPMGGPGMGAMPP 399
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 138/262 (52%), Gaps = 28/262 (10%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
+I++ LD + + L+D F G + S ++ D + Q S G+G+V F++ A+ A+D+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
L + +LR K +R+ ++ NN+ VK L +S LK++F ++G +
Sbjct: 69 AGSKLGS-------RYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRL 121
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
T+ + D G+S+ + ++FE + A AV ++G + D + V + Q ++ EL
Sbjct: 122 TAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQ--AQHRDELL 179
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--G 276
QF NLY+KNL ++ DEKL+ F+++G ++S KV RD G
Sbjct: 180 KQFT-------------NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAAQSEAG 225
Query: 277 SGFVAFSTPEEASRALAEMNGK 298
G+VAF E A+RA+ E+NGK
Sbjct: 226 LGYVAFQKHENAARAVEELNGK 247
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD E+L++L+SP L +
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNAEILNMLDSPTMLDS 579
Query: 541 KVAEAMEVL 549
K+AEA +VL
Sbjct: 580 KIAEAQDVL 588
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V LD ++ L F G +TS V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 192 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G K R + K Q+ S+R + N+ +K L S+D
Sbjct: 69 A-GSKLGSRYLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKSVDTYA 110
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LKE+FS+FG +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQA--IVVE 168
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSV 336
+ + + R L QF+ + + P+V
Sbjct: 169 RYQAQHRDELLKQFTNLYVKNLDPAV 194
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/175 (55%), Positives = 129/175 (73%), Gaps = 3/175 (1%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 105
KNLDKSJD+KAL+D FS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG +G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
M D GKSK FGFV+FE +DA KAV +NGK+ + ++ YV +AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELK 174
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+DR+ +VG+ + + ERE L + ++ N+YIKN G+ +DDE+LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFT----------NVYIKNFGEDMDDERLKELFG 109
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
FG S KVM D SG SKG GFV+F E+A +A+ EMNGK K +YV AQ+K ER
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVER 169
Query: 317 RARLQ 321
+ L+
Sbjct: 170 QTELK 174
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L +
Sbjct: 47 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKE 106
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG LS K+ TD SG+SKGFGFV FE E AQ A+ ++NG N KQ++V +K
Sbjct: 107 LFGXFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKK 166
Query: 120 QERET 124
ER+T
Sbjct: 167 VERQT 171
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL SJD++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 300 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYI 92
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 142/207 (68%), Gaps = 8/207 (3%)
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
DE LK +F S VM D GKSK F FV+FE +DA KAV+ +NGK+ + ++ YV
Sbjct: 3 DERLKDLFR---PALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYV 59
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
G+AQKK E + E K +FEQ ++T+ ++QG+NLY+KNL D IDDE L++ FS FGTITS
Sbjct: 60 GRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSA 119
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
KVM + G SKG GFV FS+PEEA++A+ EMNG+ + +KPLYVA+AQ KEE A L +Q+
Sbjct: 120 KVMME-GGRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQY 178
Query: 325 SQMRPVAMGPSVPPRM--PMYPPGPSG 349
M+ +A +VP + P P PSG
Sbjct: 179 --MQRMASVRAVPNAVINPYQPAPPSG 203
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 108/187 (57%), Gaps = 18/187 (9%)
Query: 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+D + L D F LS K+ TD SG+SKGF FV FE E AQ A+D++NG +N KQ+
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 112 FVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTI 158
+VG +K E +T K KF N++VKNLD+ DE L+K F +GTI
Sbjct: 58 YVGRAQKKVEPQTEP-KHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTI 116
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
TSA VM +G G+SK FGFV F + ++A KAV+ +NG+ + YV AQ K E L
Sbjct: 117 TSAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLT 175
Query: 219 GQFEQAM 225
Q+ Q M
Sbjct: 176 SQYMQRM 182
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 19/132 (14%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLD 49
A +A+D +N LN K I + + + D R G N+++KNLD
Sbjct: 40 AQKAVDEMNGKELNGKQIYVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGV-NLYVKNLD 98
Query: 50 KSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 109
ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG + K
Sbjct: 99 DGIDDEHLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATK 157
Query: 110 QVFVGHFLRKQE 121
++V K+E
Sbjct: 158 PLYVALAQLKEE 169
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+DDE+LK+LF S KVM D SG SKG FV+F E+A +A+ EMNGK + K +
Sbjct: 1 MDDERLKDLFR---PALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 306 YVAVAQRKEERRARLQAQFSQMR 328
YV AQ+K E + + +F QM+
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMK 80
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 185/333 (55%), Gaps = 18/333 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD T L ++ +RI RDPS R+SG NI +K L K++D AL + FS F
Sbjct: 60 ADAEKALDQAG-TKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKF 118
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +A D G+S+G+ + FE +ESA A+ +++GM ++ + + V + + E
Sbjct: 119 GRLTAIGLACDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQAIVVERYQAQHRDEL 178
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENAD 183
+ +F N++VKNLD + TDE L+ F YG ++SA V G +S+ G+V FE +
Sbjct: 179 L---KQFTNLYVKNLDPAVTDEKLRAFFARYGAVSSAKVRDLGGVQSEVGLGYVAFEKHE 235
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL------NL 237
DAA+AVE LNGK E + KA+ + + + Q +E + + NL
Sbjct: 236 DAARAVEELNGK-----ECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNL 290
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 296
Y+K D++ E+L+ELF +G S VM D +G+S+ GFV+ AS+A+ E+N
Sbjct: 291 YVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELN 350
Query: 297 GKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 328
G + +PL+V A RK+ RR L+ + Q R
Sbjct: 351 GSTFLCPRPLFVTYALRKDARRQNLEERSKQFR 383
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 142/262 (54%), Gaps = 28/262 (10%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
+I++ LD + + L+D F G + S ++ D + Q S G+G+V F++ A+ A+D+
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
L + +LR K +R+ ++ NN+ VK L ++ LK++F ++G +
Sbjct: 69 AGTKLGS-------RYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRL 121
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
T+ + D G+S+ + ++FE + A +AV+ ++G + D + V + Q ++ EL
Sbjct: 122 TAIGLACDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQAIVVERYQ--AQHRDELL 179
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--G 276
QF NLY+KNL ++ DEKL+ F+ +G ++S KV RD G+ G
Sbjct: 180 KQFT-------------NLYVKNLDPAVTDEKLRAFFARYGAVSSAKV-RDLGGVQSEVG 225
Query: 277 SGFVAFSTPEEASRALAEMNGK 298
G+VAF E+A+RA+ E+NGK
Sbjct: 226 LGYVAFEKHEDAARAVEELNGK 247
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L +L+SP L +
Sbjct: 505 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILSMLDSPVMLDS 564
Query: 541 KVAEAMEVL 549
K+AEA +VL
Sbjct: 565 KIAEAQDVL 573
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V LD ++ L F G +TS V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 192 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G K R + K Q+ S+R + N+ +K L ++D
Sbjct: 69 A-GTKLGSRYLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKTVDTYA 110
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LKELFS+FG +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKELFSKFGRLTAIGLACDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQA--IVVE 168
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSV 336
+ + + R L QF+ + + P+V
Sbjct: 169 RYQAQHRDELLKQFTNLYVKNLDPAV 194
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 191/331 (57%), Gaps = 11/331 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDP-SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
AA+A+ LN+T L+ + IRI++ + +I KSG G++FI LD+SI+ LHD FS+FG
Sbjct: 61 AAKAMKNLNYTKLDGRPIRILWCDTETKAIIKSGRGSLFINGLDESIEVSQLHDAFSNFG 120
Query: 66 NILSCKI-ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
I+SCKI TDG +S+G+G++QF N E+A+ A +L IN K + + ++ RK R
Sbjct: 121 EIISCKIPLTDG--KSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRRNP 178
Query: 125 VAIKTKFNNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
F NV++K L D+ TDEDL+KIF +G I + + +D +G SK FGF NF+
Sbjct: 179 ---DEDFTNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLH 235
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAVE LNG++ V + K E+E + + +++ ++ G NLY+K+
Sbjct: 236 EDAVKAVEGLNGQEMFGVTLQVNRLMSKREKELYNIKKHTEKVEKFAEETNGRNLYVKSF 295
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
+ D++ +E FS+FG I K+ R P + SKG GFV + + E+A A+ + +
Sbjct: 296 SKDVTDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAIEMAMLERLH 355
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
YV Q K R++ + + RP A+
Sbjct: 356 GDLPYVGFFQTKAAHE-RVKVKNTHPRPSAV 385
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTI--TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+FV +L + + LK+ F E G I S +V++ F FV F + AAKA++
Sbjct: 8 IFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDSSFAFVTFATHEQAAKAMKN 67
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN K D R + ++ K + +G +L+I L +SI+ +L
Sbjct: 68 LNYTKLDGRPIRILWCDTET--------------KAIIKSGRG-SLFINGLDESIEVSQL 112
Query: 252 KELFSEFGTITSCKV-MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ FS FG I SCK+ + D G S+G G++ F PE A +A E+ I KP+ +
Sbjct: 113 HDAFSNFGEIISCKIPLTD--GKSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNY 170
Query: 311 QRKEER 316
RK R
Sbjct: 171 NRKSRR 176
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/270 (40%), Positives = 160/270 (59%), Gaps = 12/270 (4%)
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 155
+A L+G +++ K++FV F+ K ER ++ +F NV+V+NL E+ T++ L ++F +Y
Sbjct: 30 SARSALHGSMVDGKKLFVAKFINKDERAAMSWNQEFTNVYVENLIENVTEDILHRLFSQY 89
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G ++S VVMRDG G+S+ GFVNF + ++A KAVE L G++ + +VGKA +K ER +
Sbjct: 90 GIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLCGRQLGSKTLFVGKALRKDERME 149
Query: 216 ELKGQFEQAMKETVDK--FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
LK F ++ K N+Y+KNL +S++D +L+E+F +G I S KVMR +G
Sbjct: 150 MLKQHFRD---NSIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGR 206
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS-QMRPVAM 332
SKG GFV FS EE+ +A +N + KPL V V +RKE+ RL F Q R
Sbjct: 207 SKGFGFVCFSNREESKQAKRYLN---VDGKPLVVRVTERKEDTLKRLHQYFHGQPRHYTQ 263
Query: 333 GPSVP-PRMPM--YPPGPSGLGQQFLYGQA 359
P VP P P+ Y P G Q F G +
Sbjct: 264 APLVPSPTQPVLSYVPSSYGYLQPFHVGTS 293
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 13/164 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++++NL +++ LH FS +G + S + DG G+S+G GFV F + E+A+ A++ L
Sbjct: 67 NVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFL 126
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKF------------NNVFVKNLDESTTDEDLK 149
G + K +FVG LRK ER + +K F +N++VKNL ES D L+
Sbjct: 127 CGRQLGSKTLFVGKALRKDERMEM-LKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRLR 185
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+IFG YG I SA VMR +G+SK FGFV F N +++ +A LN
Sbjct: 186 EIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 31 RDPSIRK--SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 88
RD SI K G N+++KNL +S++ L + F +G I+S K+ +G+SKGFGFV F
Sbjct: 156 RDNSIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGRSKGFGFVCF 215
Query: 89 ENKESAQNAIDKLN 102
N+E ++ A LN
Sbjct: 216 SNREESKQAKRYLN 229
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 195/400 (48%), Gaps = 76/400 (19%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD L +K IRI RDPS R+SG NI +K L S+D AL + FS +
Sbjct: 61 ADAEKALDQAGVK-LGSKHIRIAKIQRDPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKY 119
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +AT+ +G+S+G+ + +E +ESA A+ ++NGM+I+D + V + E
Sbjct: 120 GRLTAIGLATNENGESRGYARISYEKEESAIQAVQEVNGMVIDDCAITVERYQPHHREEQ 179
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ +F N++VKNLD S DE LK++F +G +TSA V G ++ F +V + +
Sbjct: 180 L---KQFTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEA 236
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL--------- 235
AAKAVE L D++E + K + MK +V +F+
Sbjct: 237 AAKAVEEL-----DEKESPLAK----------------EGMKLSVCRFRSRDERQRERER 275
Query: 236 -------------NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVA 281
NLY+KN D++ E+LKELF G S VM D + +S+ GFV+
Sbjct: 276 LRRERQQQHSKYPNLYVKNFDDTVTSERLKELFERCGETVSVSVMMDRATRVSRCFGFVS 335
Query: 282 FSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQ------------------- 321
F ASRA+ E++G + +PL+V A RK+ RR L+
Sbjct: 336 FKEQSAASRAIQELHGSTALGPRPLFVTYALRKDARRQTLEDMRNKQPRMRQPPMGSLMG 395
Query: 322 ----AQFSQMRPVAMGPSVP---PRMPMYPPGPSGLGQQF 354
Q M P AM VP PRM M P P G+G Q
Sbjct: 396 GMMGPQLGFMGPQAMFNGVPFVNPRMSMM-PTPMGMGGQL 434
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 143/258 (55%), Gaps = 21/258 (8%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
+I++ LD +++ + L+D F G + S ++ D Q S G+G+V F+N A+ A+D+
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G+ + K + + K +R+ ++ N+ VK L S LK++F +YG +T+
Sbjct: 70 A-GVKLGSKHIRIA----KIQRDPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLTA 124
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ + +G+S+ + +++E + A +AV+ +NG DD V + Q RE++LK
Sbjct: 125 IGLATNENGESRGYARISYEKEESAIQAVQEVNGMVIDDCAITVERYQPH-HREEQLK-- 181
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
Q NLY+KNL S++DEKLKE+FS FG +TS KV + + G +V
Sbjct: 182 ------------QFTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYV 229
Query: 281 AFSTPEEASRALAEMNGK 298
A++T E A++A+ E++ K
Sbjct: 230 AYATHEAAAKAVEELDEK 247
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
P+ AS GQ LST LAN +PEQQ+ +LGE LY + + AAAKVTGMLLEMD
Sbjct: 466 PQSLASQGQ-----NLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDN 520
Query: 526 TEVLHLLESPEALKAKVAEAMEVL 549
E+L+LL++P L AKV EA+EVL
Sbjct: 521 GEILNLLDTPGLLDAKVQEALEVL 544
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + ++ L F G + S V D KS +G+VNF+N DA KA++
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 192 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G K + + K Q+ S+R + N+ +K L S+D
Sbjct: 70 A-GVKLGSKHIRIAKIQRDPSKRRSGVT-----------------NIVVKKLPPSVDTYA 111
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LKE+FS++G +T+ + + +G S+G +++ E A +A+ E+NG +I + V
Sbjct: 112 LKEMFSKYGRLTAIGLATNENGESRGYARISYEKEESAIQAVQEVNGMVI--DDCAITVE 169
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSV 336
+ + R QF+ + + PSV
Sbjct: 170 RYQPHHREEQLKQFTNLYVKNLDPSV 195
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 186 bits (473), Expect = 2e-44, Method: Composition-based stats.
Identities = 91/153 (59%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFV 86
M+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV
Sbjct: 1 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTT 144
FE E+A+ AI+K+NGML+ND++VFVG F ++ERE A +F NV++KN E
Sbjct: 60 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDME 119
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
DE L++IF ++G S VM D GKS+ FGFV
Sbjct: 120 DEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 115 bits (287), Expect = 9e-23, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 97/160 (60%), Gaps = 11/160 (6%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 4 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A +A+E +NG +DR+ +VG+ + + ERE E+ + ++ N+YIK
Sbjct: 63 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFT----------NVYIK 112
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
N G+ ++DEKL+E+FS+FG S +VM D G S+ GFV
Sbjct: 113 NFGEDMEDEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 78.6 bits (192), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 16 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 74
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 330
NG ++ + ++V + ++ER A + A+ + V
Sbjct: 75 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNV 109
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 117/155 (75%), Gaps = 3/155 (1%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREA 181
Query: 125 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGT 157
+ K K F NV++KN E DE LK+ F +YG
Sbjct: 182 ELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGC 216
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 124/221 (56%), Gaps = 16/221 (7%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK + FV+FE D A +A+E +NG +DR+ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGA 185
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT 260
+ ++ N+YIKN G+ +DDE+LKE FS++G
Sbjct: 186 KAKEFT----------NVYIKNFGEDMDDERLKETFSKYGC 216
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 26/205 (12%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 247
+N FD +KG+ + M D + G+ N++IKNL SID
Sbjct: 72 MN---FD-----------------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Query: 308 AVAQRKEERRARLQAQFSQMRPVAM 332
+ + ER A L A+ + V +
Sbjct: 171 GRFKCRREREAELGAKAKEFTNVYI 195
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 187/369 (50%), Gaps = 33/369 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD L K IRI RDPS R+SG NI +K L ++D AL + FS F
Sbjct: 61 ADAEKALDQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMFSKF 119
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +ATD G+S+G+ + +E +ESA A+ +LNG+ I+D + V + E
Sbjct: 120 GRLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVERYQPHHREEQ 179
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ ++ N++VKNLD S DE LK++F ++G +TSA V G+ S F +V + +
Sbjct: 180 L---KQYTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEA 236
Query: 185 AAKAVEALNGKKFD-DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AAKAVE L+ K +E + RE+ + + + + NLY+KN
Sbjct: 237 AAKAVEELDEKSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFD 296
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D++ EKLKELF FG S VM D + +S+ GFV+F AS+A+ E++G +
Sbjct: 297 DTVTSEKLKELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQELHGSTALG 356
Query: 303 -KPLYVAVAQRKEERRARLQ-----------------------AQFSQMRPVAMGPSVP- 337
+PL+V A RK+ RR L+ Q M P M +P
Sbjct: 357 PRPLFVTYALRKDARRQTLEDIRNKQPRMRQPPMGGLMSGMMAPQLGFMNPPTMFNGLPF 416
Query: 338 --PRMPMYP 344
PRMPM P
Sbjct: 417 MNPRMPMMP 425
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 146/266 (54%), Gaps = 21/266 (7%)
Query: 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKE 92
S+ + + +I++ LD +++ + L+D F G + S ++ D Q S G+G+V F+N
Sbjct: 2 SVFPTASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPA 61
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
A+ A+D+ G+ + K + + K +R+ ++ N+ VK L + LK++F
Sbjct: 62 DAEKALDQA-GVKLGTKHIRIA----KIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMF 116
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
++G +T+ + D G+S+ + +++E + A +AV LNG DD V + Q
Sbjct: 117 SKFGRLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVERYQPH-H 175
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
RE++LK Q NLY+KNL S+DDEKLKE+F++FG +TS KV +
Sbjct: 176 REEQLK--------------QYTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNN 221
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGK 298
S G +VA++T E A++A+ E++ K
Sbjct: 222 SSVGFAYVAYATHEAAAKAVEELDEK 247
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 50/69 (72%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
LST LA+ PEQQ+ +LGE LY + + AAKVTGMLLEMD +E+L+LL+SP L
Sbjct: 483 LSTMLASLPPEQQKNVLGERLYNYIVRNNPSVAAKVTGMLLEMDNSEILNLLDSPSMLDT 542
Query: 541 KVAEAMEVL 549
KV EA++VL
Sbjct: 543 KVQEALDVL 551
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + ++ L F G + S V D KS +G+VNF+N DA KA++
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 192 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G K + + K Q+ S+R + N+ +K L ++D
Sbjct: 70 A-GVKLGTKHIRIAKIQRDPSKRRSGVT-----------------NIVVKKLPSTVDTYA 111
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LKE+FS+FG +T+ + D G S+G +++ E A A+ E+NG I + V
Sbjct: 112 LKEMFSKFGRLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGVSI--DDCSITVE 169
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSV 336
+ + R Q++ + + PSV
Sbjct: 170 RYQPHHREEQLKQYTNLYVKNLDPSV 195
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFEN 90
+PS T ++++ +L + L++ FS G ILS ++ D + S + +V F++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
+ A++A+D +N +I K + + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
+G I S V+ D +G SK +GFV+FE + A +A+E +NG + R+ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 62/83 (74%)
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 542 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 601
Query: 539 KAKVAEAMEVLRSVAQQQANNPA 561
++KV EA+ VL++ ++A A
Sbjct: 602 RSKVDEAVAVLQAHQAKEATQKA 624
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS---GFVA 281
M + + +LY+ +L + + L E FS G I S +V RD I++GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
F P++A AL MN +I KPL + +QR
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQR 89
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 167/290 (57%), Gaps = 17/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L + FS+ G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 11 ASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N I +K + + +R+ K+ NVF+KNLD++ ++ + F +G I
Sbjct: 71 TMNFDAIKNKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNIL 126
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D + SK +GFV+FE + A KA+ +NG ++++ YVGK + ERE+ L
Sbjct: 127 SCRVATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLG- 185
Query: 220 QFEQAMKETVDKFQGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
DK + N+YIKN GD +DD+KL +F ++G ITS KVM D SG ++G G
Sbjct: 186 ----------DKARCFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFG 235
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
FV+F P+ A RA+ E+NGK + +PLYV AQ+K ER++ L+ F Q++
Sbjct: 236 FVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLK 285
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P+TA + LA A+P Q+ +LGE L+PL+ ++ D A K+TGMLLE+D +E+LH+LE E
Sbjct: 599 PLTA--SMLAEATPHDQKQMLGERLFPLIHRMYPDLAGKITGMLLEIDNSELLHMLEHHE 656
Query: 537 ALKAKVAEAMEVLRS 551
+LKAKV EA+ VL++
Sbjct: 657 SLKAKVEEAVAVLQA 671
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 138/188 (73%), Gaps = 1/188 (0%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 99
+G I+IKNL++SID+KA++DTFS+FGNIL+C +A D G S+G+GFVQF+++E+A+ AI+
Sbjct: 127 SGKIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIE 186
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
K+NG+L N ++V V ++ +++RE T+F N++VKN +E +++++K++F YG IT
Sbjct: 187 KVNGILCNSQKVHVVKYIPRRDREQEK-ATQFRNLYVKNFNEDFSEQNMKEMFEPYGRIT 245
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S +M D +G+SK FGFV FEN A AV ALNGK+ D+ YV +A K ER+QE+
Sbjct: 246 SHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
Query: 220 QFEQAMKE 227
+ E+ ++
Sbjct: 306 KLEERKRQ 313
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D G S+ +GFV F++ + A A+E +N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G + ++ +V K + +REQE QF NLY+KN + ++ +KE
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQFR-------------NLYVKNFNEDFSEQNMKE 236
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
+F +G ITS K+M D G SK GFVAF P+ A A+ +NGK + K LYVA A K
Sbjct: 237 MFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
Query: 314 EERRARLQAQFSQMR 328
ER+ + + + +
Sbjct: 297 IERQQEINRKLEERK 311
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 203/390 (52%), Gaps = 51/390 (13%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A RA+ N LN K+IR++ + S R+ N+ +KNL S ++ L+DTFS FG
Sbjct: 63 AADRAIKEYNNFRLNKKNIRVLPCMDEKSKREDA--NLIVKNLPSSFTNENLYDTFSVFG 120
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK----QVFVGHFLRKQE 121
I+S KIAT G+ K +GFVQF+ K+SA+ AI +G +++K ++F RKQE
Sbjct: 121 TIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQE 180
Query: 122 RET-----VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV-MRDGDGKSKCFG 175
+ V ++ KF N F+KN ES T++DL+ + +YG ITS ++DG SK F
Sbjct: 181 EQALENKPVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFA 240
Query: 176 FVNFENADDAAKAVEALNGKK---FDDREW-------YVGKAQKKSEREQELKGQFEQAM 225
F NFE+ + A A++ L+GK+ F++ + Y+ KAQKK ERE+ LK FEQ
Sbjct: 241 FANFESHESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLS 300
Query: 226 KETVDKFQGL--NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
E Q + NLYI N+ I+ + + E+FSEFG+I S + D + +V +S
Sbjct: 301 LEG----QNIKRNLYITNIPAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYS 356
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T +EA A+ + N I + L V + K ER M + + +VP
Sbjct: 357 TSDEAFIAIEKGNELFIDNNKLNVTYFKNKAERTKE-----KMMSSININSTVP------ 405
Query: 344 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ 373
F+Y + P I P + F Y+
Sbjct: 406 ----------FIY--SSPLKITPNSSFNYE 423
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 27/299 (9%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I++ +L L FSS G ++ K+ S F FV F N ++A AI + N
Sbjct: 14 IYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAFVTFANGDAADRAIKEYN 72
Query: 103 GMLINDKQVFVGHFL-RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
+N K + V + K +RE N+ VKNL S T+E+L F +GTI SA
Sbjct: 73 NFRLNKKNIRVLPCMDEKSKREDA-------NLIVKNLPSSFTNENLYDTFSVFGTIISA 125
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+ DGK K +GFV F+ A A++ +G K D++ V K+ R+QE
Sbjct: 126 KIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQE----- 180
Query: 222 EQAMKETVDKFQ--GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV-MRDPSGISKGSG 278
EQA++ K + N +IKN +S ++ L+ L +++G ITS ++D + +SKG
Sbjct: 181 EQALENKPVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFA 240
Query: 279 FVAFSTPEEASRALAEMNGKMIV----------SKPLYVAVAQRKEERRARLQAQFSQM 327
F F + E A A+ E++GK I +P Y+ AQ+KEER L+ F Q+
Sbjct: 241 FANFESHESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQL 299
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 214/419 (51%), Gaps = 76/419 (18%)
Query: 171 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 230
SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL + ++
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 145
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF-------- 282
N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 146 -----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 200
Query: 283 ----------------STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
S+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 201 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 260
Query: 327 ----MRPVAMGPSVPPRMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQQ-- 374
+R V P + P P P G P + Y + A + P + Q
Sbjct: 261 RMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGAR 319
Query: 375 ----QLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 429
Q +PG +RPA AP P F + Q + +R A QT P P
Sbjct: 320 PHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA------ 372
Query: 430 RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALS 482
A P R + + + G + P P+ ++ QP P+TA
Sbjct: 373 -AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA-- 423
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
+ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D E LH+LE PE+L++K
Sbjct: 424 SMLASAPPQEQKQMLGEGLFPLIQAMHPTLAGKITGMLLEIDNLE-LHMLEPPESLRSK 481
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 98/172 (56%), Gaps = 26/172 (15%)
Query: 80 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVK 137
SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A +F NV++K
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 150
Query: 138 NLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD------------- 184
N E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 151 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKG 210
Query: 185 -----------AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 211 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 262
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 30/148 (20%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L D
Sbjct: 104 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 163
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ------------------------ 95
F FG LS K+ TD SG+SKGFGFV FE E AQ
Sbjct: 164 LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKGFGFVCFSSPEEAT 223
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQERE 123
A+ ++NG ++ K ++V RK+ER+
Sbjct: 224 KAVTEMNGRIVATKPLYVALAQRKEERQ 251
>gi|123407356|ref|XP_001302991.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884332|gb|EAX90061.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 477
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 129/355 (36%), Positives = 189/355 (53%), Gaps = 33/355 (9%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSS 63
A RA+ +N+T L+ IRI++S DP + K+ G +FI+ LD++I+ LHD FS+
Sbjct: 60 AKRAISEVNYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSN 117
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF---LRKQ 120
FG I+SCKI +G+S+G+GF+ F ++ A+ A L IN K + + + RK
Sbjct: 118 FGEIVSCKIPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKN 176
Query: 121 ERETVAIKTKFNNVFVKNL--DESTTDEDLKKIFGEYGTIT-----SAVVMRDGDGKSKC 173
ET F NVF+K L D TD+DL F E+G + + R DG S
Sbjct: 177 PEET------FTNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCE 230
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQFEQAMKETVDK 231
FGF NF++ +DA KAV+ALNGK+ + + + +AQ K+ER+ L Q + + ++
Sbjct: 231 FGFCNFKHHEDAVKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEE 290
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEAS 289
+G NLY+KN S+ DE+ KE F +FG + C + R+ SKG GFV F T E A
Sbjct: 291 TRGRNLYVKNFDQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQ 350
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEER-RARLQAQFSQMRPVAM------GPSVP 337
AL + K Y+ + + KEER R + Q Q AM GP +P
Sbjct: 351 NALENAVITPLNGKTPYIGLFKMKEEREREKASNQRKQQPKGAMIPNTIGGPVIP 405
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 126/296 (42%), Gaps = 29/296 (9%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDKL 101
+F+ +L S+D + + F +G+ S + K F FV FE+ E A+ AI ++
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N ++ + + L AIK +F++ LDE+ L F +G I S
Sbjct: 68 NYTKLDGVPIRI---LWSDPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSC 124
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+ +GKS+ +GF+ F DDA +A L + + + QK + + E
Sbjct: 125 KIPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKNPE----- 178
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSI--DDEKLKELFSEFGTITSC-----KVMRDPSGIS 274
ET N++IK L I D+ L F EFG + R G S
Sbjct: 179 -----ETF-----TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSS 228
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV--AQRKEERRARLQAQFSQMR 328
GF F E+A +A+ +NGK S + + AQ K ER+A L Q ++ R
Sbjct: 229 CEFGFCNFKHHEDAVKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFR 284
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAV 189
+ VFV +L S + +K+IF +YG+ S V ++ K F FV FE+ + A +A+
Sbjct: 5 WKEVFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAI 64
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+N K D + + ++R A+K V L+I+ L ++I+
Sbjct: 65 SEVNYTKLDGVPIRILWSDPGTKR----------AIKNNVGA-----LFIRGLDENIEVS 109
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
+L + FS FG I SCK+ +G S+G GF+ F ++A RA ++ I KP+ +
Sbjct: 110 QLHDAFSNFGEIVSCKIPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEF 168
Query: 310 AQR 312
Q+
Sbjct: 169 YQK 171
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 188/374 (50%), Gaps = 43/374 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A +ALD L +K IRI RDPS R+SG NI +K L ++D AL + FS +
Sbjct: 61 ADAEKALDQAGVK-LGSKHIRIARIQRDPSKRRSGVTNIVVKKLPPTVDTYALKEMFSKY 119
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +AT+ G+S+G+ + +E +ESA A+ +NGM I+D + V + E
Sbjct: 120 GRLTAIGLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITVERYQPHHREEQ 179
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ + + N++VKNLD S DE LK++F YG +TSA V G S F +V + +
Sbjct: 180 LKL---YTNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKVRDLGGKMSVGFAYVAYATHEA 236
Query: 185 AAKAVEALNGKKFDDREWYVGK-AQKKSEREQELKGQFEQAMKETVDKFQGL-----NLY 238
A KAVE L DD+E + K K S + + ++ + + Q L NLY
Sbjct: 237 AVKAVEEL-----DDKENPLAKEGMKLSVCRFRSREERQRERERLRRERQQLYSKYPNLY 291
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNG 297
+KN D++ E+LKELF FG S VM D + +S+ GFV+F ASRA+ E++G
Sbjct: 292 VKNFDDTVTSERLKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQNSASRAIQELHG 351
Query: 298 KMIVS-KPLYVAVAQRKEERRARLQ-----------------------AQFSQMRPVAMG 333
+ +PL+V A RK+ RR L+ Q M P AM
Sbjct: 352 STALGPRPLFVTYALRKDARRQTLEDMRNKQPRMRQTPMGGLMGGMMGPQLGFMNPPAMF 411
Query: 334 PSVP---PRMPMYP 344
VP RMPM P
Sbjct: 412 NGVPFMNTRMPMMP 425
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 140/259 (54%), Gaps = 23/259 (8%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
+I++ LD +++ + L+D F G + S ++ D Q S G+G+V F+N A+ A+D+
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G+ + K + + R + ++ N+ VK L + LK++F +YG +T+
Sbjct: 70 A-GVKLGSKHIRIARIQRDPSKR----RSGVTNIVVKKLPPTVDTYALKEMFSKYGRLTA 124
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ + G+S+ + +++E + A +AV+ +NG DD V + Q RE++LK
Sbjct: 125 IGLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITVERYQPH-HREEQLKLY 183
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGF 279
NLY+KNL S+ DEKLKE+FS +G +TS KV RD G +S G +
Sbjct: 184 --------------TNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKV-RDLGGKMSVGFAY 228
Query: 280 VAFSTPEEASRALAEMNGK 298
VA++T E A +A+ E++ K
Sbjct: 229 VAYATHEAAVKAVEELDDK 247
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
LST LAN +PEQQ+ +LGE LY + ++ AAKVTGMLLEMD +E+L+LL++P L
Sbjct: 474 LSTMLANLTPEQQKNVLGERLYNHIVRVNPSVAAKVTGMLLEMDNSEILNLLDTPGLLDT 533
Query: 541 KVAEAMEVL 549
KV EA+EVL
Sbjct: 534 KVQEALEVL 542
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD + ++ L F G + S V D KS +G+VNF+N DA KA++
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 192 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G K + + + Q+ S+R + N+ +K L ++D
Sbjct: 70 A-GVKLGSKHIRIARIQRDPSKRRSGVT-----------------NIVVKKLPPTVDTYA 111
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
LKE+FS++G +T+ + + G S+G +++ E A A+ +NG I P+ V
Sbjct: 112 LKEMFSKYGRLTAIGLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITV 168
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 181 bits (458), Expect = 1e-42, Method: Composition-based stats.
Identities = 87/153 (56%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFV 86
M+S RDP +RKSG GNIFIKN+D+SID+KAL+DT S+FGNILSCK+ D +G SKG+GFV
Sbjct: 1 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTT 144
FE +E+A AI+ +NGML+ND++VFVGHF ++ER E A +F NV++KN E
Sbjct: 60 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDID 119
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
E LK IF E+G S VM D G S+ FGFV
Sbjct: 120 REKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 113 bits (283), Expect = 2e-22, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 11/160 (6%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+R+ K+ N+F+KN+DES ++ L +G I S V+ D +G SK +GFV+FE
Sbjct: 4 QRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A +A+E +NG +DR+ +VG + + ER E+ + AM+ T N+YIK
Sbjct: 63 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAK---AMEFT-------NVYIK 112
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
N + ID EKLK +FSEFG S VM D SG S+G GFV
Sbjct: 113 NFSEDIDREKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKN+ +SID++ L + S FG I SCKV+ D +G SKG GFV F T E A+RA+ M
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETM 74
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQ 323
NG ++ + ++V + ++ER A + A+
Sbjct: 75 NGMLLNDRKVFVGHFKSRKERMAEMGAK 102
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
++ A RALD LN++P+N + R+M+SHRDP++R+SG GN+++KNLD++ID+KAL+DTFS
Sbjct: 99 VADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSL 158
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FGNILSCK+A G+S+GFGFV FE+ ESA+ AI KLNGM I +K V+V F + +R
Sbjct: 159 FGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRS 218
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+ K F NV++K++ S T+E +++ FG +G ITS
Sbjct: 219 DGSPK-NFTNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 18/223 (8%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
+++ +L ++ L++ F+ G + S ++ D + +S G+ ++ F N A+ A+D
Sbjct: 49 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN IN + L R+ ++ NV+VKNLD + ++ L F +G I S
Sbjct: 109 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 164
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V DGKS+ FGFV+FE+ + A A+ LNG + ++ YV + +K ++R
Sbjct: 165 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPKN 224
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 263
F N+YIK++ S +EK++E F FG ITS
Sbjct: 225 FT-------------NVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 188
+F +++ +L + L ++F G + S V RD KS + ++NF N DA +A
Sbjct: 46 QFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
++ LN + R + + + + G N+Y+KNL +ID+
Sbjct: 106 LDTLNYSPINGRPCRLMWSHRDPALRRSGAG----------------NVYVKNLDRNIDN 149
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L + FS FG I SCKV P G S+G GFV F + E A A+A++NG I K +YVA
Sbjct: 150 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Query: 309 VAQRKEERRARLQAQFSQMRPVAMGPS 335
++ +R F+ + + PS
Sbjct: 210 QFKKTADRSDGSPKNFTNVYIKHIPPS 236
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 176/319 (55%), Gaps = 18/319 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A++ LNF +++K +R+M ++ I+ GNI IKNL D K LHDTFS FG
Sbjct: 75 ALEAVNKLNFFKVHDKEMRVMLYDKER-IKSMDRGNIVIKNLSADCDSKTLHDTFSIFGE 133
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE-TV 125
ILSCK+A + G+ KGFGFVQF+NK A+ A+ M ++ GH ++ ++ E
Sbjct: 134 ILSCKVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMD------GHAIKVEKYEKNY 187
Query: 126 AIKT---KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
IKT F NVF KN +TT++ LK+IF G ++S DG + FGF N+ENA
Sbjct: 188 KIKTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENA 247
Query: 183 DDAAKAVEALNGKKFDDREW----YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
DA KA++ L+GK + ++ YV +AQ K +R L FE+ ++ NLY
Sbjct: 248 ADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLN--YKRNLY 305
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNG 297
+ L + E+++ELFS++G I S V +D K +V FST +EAS A+ + N
Sbjct: 306 VTRLPSTYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNE 365
Query: 298 KMIVSKPLYVAVAQRKEER 316
I S + V + K ER
Sbjct: 366 VYIDSVKINVTYFKSKNER 384
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 29/301 (9%)
Query: 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT----DGSGQSKGFGFVQFENK 91
+K +++ +L L+ FS+ G+I++ K+ + + + +V F +
Sbjct: 13 KKENNCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQE 72
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-KFNNVFVKNLDESTTDEDLKK 150
E A A++KLN ++DK++ V L +ER IK+ N+ +KNL + L
Sbjct: 73 EEALEAVNKLNFFKVHDKEMRV--MLYDKER----IKSMDRGNIVIKNLSADCDSKTLHD 126
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V ++ GK K FGFV F+N + A KA+ KF G A K
Sbjct: 127 TFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKAL------KFGTEMQMDGHAIKV 180
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+ E+ K +K F N++ KN + +++LKE+F G ++S P
Sbjct: 181 EKYEKNYK------IKTGSRAFT--NVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKP 232
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYVAVAQRKEERRARLQAQFSQ 326
G +G GF + +A +A+ E++GK I +P YV AQ K++R L + F +
Sbjct: 233 DGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEK 292
Query: 327 M 327
+
Sbjct: 293 L 293
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 27/196 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+F KN + + L + F S G + S AT G +GFGF +EN AQ AID+L
Sbjct: 198 NVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQKAIDEL 257
Query: 102 NGMLINDKQVFVGHF---------LRKQERETVAIKTKFN-----------NVFVKNLDE 141
+G K +F G + KQ+R ++ + F N++V L
Sbjct: 258 SG-----KDIFEGKYPEPFYVQQAQTKQQRLD-SLSSAFEKLSMSGLNYKRNLYVTRLPS 311
Query: 142 STTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
+ E+++++F +YG I S V +D + K + +V F AD+A+ AVE N D
Sbjct: 312 TYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEVYIDSV 371
Query: 201 EWYVGKAQKKSEREQE 216
+ V + K+EREQ+
Sbjct: 372 KINVTYFKSKNEREQD 387
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 128 KTKFNN---VFVKNLDESTTDEDLKKIFGEYGTITSAV----VMRDGDGKSKCFGFVNFE 180
KTK N V+V +L T + DL KIF G+I + VM + + C+ +V F
Sbjct: 11 KTKKENNCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFS 70
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
++A +AV LN K D+E V KE + N+ IK
Sbjct: 71 QEEEALEAVNKLNFFKVHDKEMRVMLYD-----------------KERIKSMDRGNIVIK 113
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA-----EM 295
NL D + L + FS FG I SCKV ++ G KG GFV F A +AL +M
Sbjct: 114 NLSADCDSKTLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQM 173
Query: 296 NGKMI 300
+G I
Sbjct: 174 DGHAI 178
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 138/204 (67%), Gaps = 5/204 (2%)
Query: 145 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
DE LK +FG++G S VM D G SK FGFV+F+ +D KAV+ +NGK+ + ++ Y+
Sbjct: 3 DERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYI 62
Query: 205 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
+A K +E + EL+ +FE ++ ++QG+NLY+KNL D ID+ L++ FS FGTIT
Sbjct: 63 SRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGA 122
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
K M + G S+G GFV FS+PEEA++A+ EMNG+++ +KPL VA+AQRKEER+A L Q+
Sbjct: 123 KFMME-GGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTNQY 181
Query: 325 SQMRPVAMGPSVPPRMPMYPPGPS 348
M+ +A +VP P+ P S
Sbjct: 182 --MQRMASVRAVPN--PVILPATS 201
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 15/187 (8%)
Query: 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
+D + L D F FG LS K+ D G SKGFGFV F+ E Q A+D++NG +N KQ+
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 112 FVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTI 158
++ + E +T ++ KF N++VKNLD+ + L+K F +GTI
Sbjct: 61 YISRAHKTAEWQT-ELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTI 119
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
T A M +G G S+ FGFV F + ++A KAV +NG+ + V AQ+K ER+ L
Sbjct: 120 TGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLT 178
Query: 219 GQFEQAM 225
Q+ Q M
Sbjct: 179 NQYMQRM 185
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%)
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+DDE+LK+LF +FG S KVM D G SKG GFV+F E+ +A+ E+NGK + K +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 306 YVAVAQRKEERRARLQAQFSQM 327
Y++ A + E + L+ +F M
Sbjct: 61 YISRAHKTAEWQTELRCKFEHM 82
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLDKS 51
+A+D +N LN K I I +H+ D + R G N+++KNLD
Sbjct: 45 KAVDEVNGKELNRKQIYISRAHKTAEWQTELRCKFEHMNQDRATRYQGV-NLYVKNLDDG 103
Query: 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
ID L FS FG I K +G G S+GFGFV+F + E A A+ ++NG ++ K +
Sbjct: 104 IDEGCLQKEFSPFGTITGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPL 162
Query: 112 FVGHFLRKQERE 123
V RK+ER+
Sbjct: 163 CVALAQRKEERQ 174
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 177/319 (55%), Gaps = 18/319 (5%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A++ LNF +++K +R+M ++ I+ GNI IKNL D K LHDTFS FG
Sbjct: 73 ALEAVNKLNFFKVHDKEMRVMLYDKE-RIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGE 131
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE-TV 125
ILSCK+A + G+ KGFGFVQF+NK A+ A+ M ++ GH ++ ++ E
Sbjct: 132 ILSCKVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMD------GHAIKVEKYEKNY 185
Query: 126 AIKT---KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
IKT F NVF KN +TT++++K IF G ++S DG + FGF N+ENA
Sbjct: 186 KIKTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENA 245
Query: 183 DDAAKAVEALNGKKFDDREW----YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238
DA +A++ L+GK + ++ YV +AQ K +R L FE+ ++ NLY
Sbjct: 246 TDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLN--YKRNLY 303
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNG 297
+ L ++ E+++ELFS+FG + S V +D K +V FST +EAS A+ + N
Sbjct: 304 VTRLPNTYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNE 363
Query: 298 KMIVSKPLYVAVAQRKEER 316
I S + + + K ER
Sbjct: 364 IYIDSVKINITYFKSKNER 382
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 29/301 (9%)
Query: 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI---ATDGS-GQSKGFGFVQFENK 91
+K +++ +L L+ FS+ G+I++ K+ A D + + +V F +
Sbjct: 11 KKENNCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQE 70
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-KFNNVFVKNLDESTTDEDLKK 150
E A A++KLN ++DK++ V L +ER IK+ N+ +KNL + L
Sbjct: 71 EEALEAVNKLNFFKVHDKEMRV--MLYDKER----IKSMDRGNIVIKNLSADCDSKTLHD 124
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V + GK K FGFV F+N + A KA+ KF G A K
Sbjct: 125 TFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKAL------KFGTEMQMDGHAIKV 178
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+ E+ K +K F N++ KN + ++++K++F G ++S P
Sbjct: 179 EKYEKNYK------IKTGSRAFT--NVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKP 230
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYVAVAQRKEERRARLQAQFSQ 326
G +G GF + +A RA+ E++GK + +P YV AQ K++R L + F +
Sbjct: 231 DGTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEK 290
Query: 327 M 327
+
Sbjct: 291 L 291
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 27/196 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+F KN + + + D F S G + S A G +GFGF +EN AQ AID+L
Sbjct: 196 NVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQRAIDEL 255
Query: 102 NGMLINDKQVFVGHF---------LRKQERETVAIKTKFN-----------NVFVKNLDE 141
+G K VF G + KQ+R ++ + F N++V L
Sbjct: 256 SG-----KDVFEGKYPEPFYVQQAQTKQQRLD-SLSSAFEKLSMSGLNYKRNLYVTRLPN 309
Query: 142 STTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
+ E+++++F ++G + S V +D + K + +V F AD+A+ AVE N D
Sbjct: 310 TYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEIYIDSV 369
Query: 201 EWYVGKAQKKSEREQE 216
+ + + K+EREQ+
Sbjct: 370 KINITYFKSKNEREQD 385
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 112/148 (75%), Gaps = 2/148 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + + IRIM+S RDPS+RKSG GN+FIKNLDKSID+KA++DTFS+FGN
Sbjct: 67 AERALDTMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGN 126
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILSCK+ATD SKG+GFV FE +E+A NAI K+NGML+N ++VFVG F+ + ERE
Sbjct: 127 ILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQL 186
Query: 127 IKT--KFNNVFVKNLDESTTDEDLKKIF 152
+ +F NV++KN + DE L+++
Sbjct: 187 GQKARRFMNVYIKNFGDDLDDEKLREML 214
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 118/217 (54%), Gaps = 15/217 (6%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 98
++++ +L + L + FSS G +LS ++ D + +S G+ +V F+ A+ A+
Sbjct: 12 VASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERAL 71
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D +N ++ + + + +R+ K+ NVF+KNLD+S ++ + F +G I
Sbjct: 72 DTMNFDMVKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNI 127
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D + SK +GFV+FE + A A++ +NG + R+ +VGK +SERE++L
Sbjct: 128 LSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLG 187
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+ + M N+YIKN GD +DDEKL+E+
Sbjct: 188 QKARRFM----------NVYIKNFGDDLDDEKLREML 214
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 17/188 (9%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 192
++V +L T+ L + F G + S V RD + S + +VNF+ DA +A++ +
Sbjct: 15 LYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTM 74
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N R + +Q+ + G N++IKNL SID++ +
Sbjct: 75 NFDMVKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAMY 118
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCKV D SKG GFV F T E A+ A+ ++NG ++ + ++V
Sbjct: 119 DTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVP 178
Query: 313 KEERRARL 320
+ ER +L
Sbjct: 179 RSEREKQL 186
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 136/189 (71%), Gaps = 2/189 (1%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 99
+G I+IKNL++SID+KA++DTFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+
Sbjct: 101 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 160
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
K+NGML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG IT
Sbjct: 161 KVNGMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRIT 219
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELK 218
S +M D +G+S+ FGFV FEN A AV L+GK+ D ++ YV +A K+ER+QE+
Sbjct: 220 SHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 279
Query: 219 GQFEQAMKE 227
+ E+ ++
Sbjct: 280 RKLEERKRQ 288
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 112/201 (55%), Gaps = 14/201 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 164 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 210
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVAF P+ A A+ ++GK + +K LYVA A
Sbjct: 211 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 270
Query: 313 KEERRARLQAQFSQMRPVAMG 333
K ER+ + + + + G
Sbjct: 271 KAERQQEINRKLEERKRQKAG 291
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/392 (33%), Positives = 198/392 (50%), Gaps = 31/392 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A+ L+++ IR+M P TGNIF+KNL +S K L D FS FG
Sbjct: 66 AEKAVREYKHYELHDRQIRVMRKDERPP----ETGNIFVKNLPESFTSKDLDDAFSMFGE 121
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAI---DKLNGMLINDKQVFVGHF---LRKQ 120
I+SCK+AT G+SKG+GFVQF+ K SA+ I + LNG+++ ++ V + ++K
Sbjct: 122 IVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKG 181
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
E + V+ T F N F+KN S +++L + +YG +TS DGK K F F NFE
Sbjct: 182 ESKKVS--TMFTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFE 239
Query: 181 NADDAAKAVEALNGK-KFDDRE-----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 234
+ A A+ L+G FD+ + +Y+ K QK+ ER + L+ FEQ + + +
Sbjct: 240 THESALNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQNYKK- 298
Query: 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 294
NLYI N+ + E+L +F EFG+ITS V D + K ++ +STPEEAS A+
Sbjct: 299 -NLYITNIPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVER 357
Query: 295 MNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF 354
N + L VA + K ER + + P +P MY G S F
Sbjct: 358 GNEIYLDGNRLQVAYFKNKLERMKE-----KEFGGLGYKPGIP---YMYNQGASFASNGF 409
Query: 355 LYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 386
++ + P +G + + + + A AP
Sbjct: 410 KRERSRSGSVKP---YGNELEKLHSLVLAAAP 438
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 145/311 (46%), Gaps = 40/311 (12%)
Query: 32 DPSIR-KSGTGNIFIKNLD-KSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 89
D S R KS + I++ +L K+ID L FS+ G IL+ K+ G + F FV FE
Sbjct: 4 DESKRAKSDSLTIYVGDLPPKTIDSD-LFRIFSNVGKILNIKLIKRGE-SAPSFAFVTFE 61
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDED 147
N+E A+ A+ + ++D+Q+ V +RK ER ET N+FVKNL ES T +D
Sbjct: 62 NEEDAEKAVREYKHYELHDRQIRV---MRKDERPPET-------GNIFVKNLPESFTSKD 111
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE---ALNGKKFDDREWYV 204
L F +G I S V GKSK +GFV F+ A K ++ LNG + V
Sbjct: 112 LDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVV 171
Query: 205 G--KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
+ K +++ F N +IKN S+ +++L +L ++G +T
Sbjct: 172 ELYNPEMKKGESKKVSTMF-------------TNCFIKNFPGSVGEKELLDLLEKYGKVT 218
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS------KPLYVAVAQRKEER 316
S G KG F F T E A A+ ++G +P Y+ Q++EER
Sbjct: 219 SLCFPTKDDGKPKGFAFANFETHESALNAINGLHGTFPFDNGKDGGEPFYIQKGQKREER 278
Query: 317 RARLQAQFSQM 327
L+ F Q+
Sbjct: 279 AEVLRKMFEQL 289
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 108/144 (75%), Gaps = 3/144 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLD SID KAL+DTFS+F
Sbjct: 54 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAF 113
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 114 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 172
Query: 125 -VAIKTK-FNNVFVKNLDESTTDE 146
+ K K F NV++KN E DE
Sbjct: 173 ELGAKAKEFTNVYIKNFGEEVDDE 196
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 16/210 (7%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + + +R+ K+ NVF+KNLD S D+ L F +G I
Sbjct: 62 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL
Sbjct: 118 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ ++ N+YIKN G+ +DDE
Sbjct: 177 KAKEFT----------NVYIKNFGEEVDDE 196
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 26/205 (12%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 247
+N FD +KG+ + M D + G+ N++IKNL +SID
Sbjct: 63 MN---FD-----------------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSID 102
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
D+ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 103 DKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 161
Query: 308 AVAQRKEERRARLQAQFSQMRPVAM 332
+ ++ER A L A+ + V +
Sbjct: 162 GRFKSRKEREAELGAKAKEFTNVYI 186
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 165/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + ++ L D FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N L+ +K + + +R+ ++ NVF+KNLD++ ++ + F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 615
Query: 541 KVAEAMEVLR 550
KV EA+ VL+
Sbjct: 616 KVEEAVAVLQ 625
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 164/290 (56%), Gaps = 16/290 (5%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + ++ L D FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N L+ +K + + +R+ ++ NVF+KNLD + ++ + F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + ERE+EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
E+A T N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 177 --EKAKLFT-------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 615
Query: 541 KVAEAMEVLR 550
KV EA+ VL+
Sbjct: 616 KVEEAVAVLQ 625
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 20/289 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
+++ +LD S L++ FS+ G ++S ++ D + +S G+ +V F+ A AID
Sbjct: 33 SLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAIDA 92
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN ++N K + + + +R+ K+ N+F+KNLD+ ++ L F ++G I S
Sbjct: 93 LNFQVVNGKPIRIMY----SQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVS 148
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
A V D G+SK +GFV F+ + A A+E +NG +D++ YVG QK++ER
Sbjct: 149 AKVATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNER------- 201
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
T + N+Y+KNL +S+ +EKL+E+F +FG +TS VM+D G SKG GFV
Sbjct: 202 --GGGPTTFN-----NVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFV 254
Query: 281 AFSTPEEASRALAEMNG-KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ E A +++ E++G I K V AQ+K ER A L+A+F R
Sbjct: 255 CYEDAEAAGKSVEELDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAER 303
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P++ L+ L A+P+QQR LLGE+LYPLV+ +E ++AK+TGMLLEMD +EVLHL+ESPE
Sbjct: 525 PVSLLAAQLPTATPDQQRMLLGEALYPLVDAVEPASSAKITGMLLEMDHSEVLHLIESPE 584
Query: 537 ALKAKV 542
AL+AKV
Sbjct: 585 ALRAKV 590
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 140/203 (68%), Gaps = 7/203 (3%)
Query: 26 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGF 85
I+ S+ P RK I+IKNL++SID+KA++DTFS FGNIL+C +A D G S+G+GF
Sbjct: 103 IINSNSTPDSRK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGF 157
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTD 145
V F+ +E+A+ AI+K+NGML N+++V V F+ +++RE T F N++VKNL E T+
Sbjct: 158 VHFDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEK-ATHFKNLYVKNLGEEFTE 216
Query: 146 EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YV 204
+ L+++F YG ITS +M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV
Sbjct: 217 QHLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYV 276
Query: 205 GKAQKKSEREQELKGQFEQAMKE 227
+A K+ER+QE+ + E+ ++
Sbjct: 277 ARALSKAERQQEINRKLEERKRQ 299
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 111/196 (56%), Gaps = 14/196 (7%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F+ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNLG+ ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLGEEFTEQHLRE 221
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 313 KEERRARLQAQFSQMR 328
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 164/289 (56%), Gaps = 16/289 (5%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI- 98
TGNIF+KNL +S K L D FS FG I+SCK+AT G+SKG+GFVQF+ K++A+ I
Sbjct: 10 TGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAKKVIK 69
Query: 99 --DKLNGMLINDKQVFVGHF---LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
+ LNG+++ ++ V + ++K E + V+ T F N F+KN TT+++L ++
Sbjct: 70 NFNNLNGLMLGGNKIAVELYNPDMKKGESKKVS--TMFTNCFIKNFPVDTTEKELLELLV 127
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK-KFDDRE-----WYVGKA 207
YG +TS DGK K F F NFE+ + A A+ L+G FD + +Y+ K
Sbjct: 128 RYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFYIQKG 187
Query: 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 267
Q+K ER +EL+ FEQ + + NLYI N+ + E+L +F EFG+ITS V
Sbjct: 188 QRKEERAEELRKMFEQLSMQGQSYRK--NLYITNIPEGFGAEELNNIFKEFGSITSMSVG 245
Query: 268 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
D + K ++ +STPEEAS A+ N + L V+ + K ER
Sbjct: 246 IDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLER 294
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N FIKN K L + +G + S G+ KGF F FE+ ESA NAI+ L
Sbjct: 107 NCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNL 166
Query: 102 NGMLINDKQ------VFVGHFLRKQER--------ETVAIK--TKFNNVFVKNLDESTTD 145
+G D ++ RK+ER E ++++ + N+++ N+ E
Sbjct: 167 HGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQLSMQGQSYRKNLYITNIPEGFGA 226
Query: 146 EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 205
E+L IF E+G+ITS V DG K + ++ + ++A+ AVE N D V
Sbjct: 227 EELNNIFKEFGSITSMSVGIDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVS 286
Query: 206 KAQKKSEREQE 216
+ K ER +E
Sbjct: 287 YFKNKLERMKE 297
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 95/225 (42%), Gaps = 35/225 (15%)
Query: 117 LRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 174
+RK ER ET N+FVKNL ES T +DL F +G I S V GKSK +
Sbjct: 1 MRKDERPPET-------GNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGY 53
Query: 175 GFVNFENADDAAKAVEA---LNGKKFDDREWYV---GKAQKKSEREQELKGQFEQAMKET 228
GFV F+ A K ++ LNG + V KK E K+
Sbjct: 54 GFVQFKEKKAAKKVIKNFNNLNGLMLGGNKIAVELYNPDMKKGES------------KKV 101
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 288
F N +IKN +++L EL +G +TS G KG F F + E A
Sbjct: 102 STMFT--NCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESA 159
Query: 289 SRALAEMNGKMIVS------KPLYVAVAQRKEERRARLQAQFSQM 327
A+ ++G +P Y+ QRKEER L+ F Q+
Sbjct: 160 LNAINNLHGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQL 204
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 134/186 (72%), Gaps = 2/186 (1%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I+IKNL++SID+KA++DTFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQF 221
+M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 222 EQAMKE 227
E+ ++
Sbjct: 294 EERKRQ 299
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 14/201 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 313 KEERRARLQAQFSQMRPVAMG 333
K ER+ + + + + G
Sbjct: 282 KAERQQEINRKLEERKRQKAG 302
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 134/186 (72%), Gaps = 2/186 (1%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I+IKNL++SID+KA++DTFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQF 221
+M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 222 EQAMKE 227
E+ ++
Sbjct: 294 EERKRQ 299
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 14/201 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 313 KEERRARLQAQFSQMRPVAMG 333
K ER+ + + + + G
Sbjct: 282 KAERQQEINRKLEERKRQKAG 302
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 185/335 (55%), Gaps = 29/335 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALH 58
+ A R ++ N+T L+++ + +M I SG N+F+KN+ K K L+
Sbjct: 101 IEDAKRIVEKYNYTTLHDREMTLM-------ILTSGNVFPENANLFVKNIPKEYTTKKLY 153
Query: 59 DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF-- 116
+ F FG+I SCK++ D +G+S+G+GFVQ+E ESA AI L K + + F
Sbjct: 154 EIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGKTLSISRFDR 213
Query: 117 -LRKQER-ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 174
LR Q+ ++ + + F NVFVKN S T+ LK I +YG I S + + + F
Sbjct: 214 SLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPLNEKSEPVGF 273
Query: 175 GFVNFENADDAAKAVEALNGKKFDDRE-----------WYVGKAQKKSEREQELKGQFEQ 223
VNFE A+DAAKAVE L+ K E +Y+ KA+++ ERE+ ++ Q E
Sbjct: 274 ACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEA 333
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
+ ++ NLYI ++ ++ ++++++LFS+FGTI S K+ + S +K G++ F
Sbjct: 334 LSLKGIN--SKNNLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFK 391
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318
TPEEA+ A M+G ++ + L ++ + K ERRA
Sbjct: 392 TPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRA 426
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 37/263 (14%)
Query: 82 GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN------NVF 135
+ FV F + E A+ ++K N ++D+++ T+ I T N N+F
Sbjct: 92 SYAFVTFLSIEDAKRIVEKYNYTTLHDREM------------TLMILTSGNVFPENANLF 139
Query: 136 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
VKN+ + T + L +IF ++G+I S V D +G+S+ +GFV +E + A KA+ L +
Sbjct: 140 VKNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDE 199
Query: 196 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
KF+ GK S ++ L+ Q + F N+++KN S+ + KLK++
Sbjct: 200 KFE------GKTLSISRFDRSLRDQKHSDSSSSTSSFT--NVFVKNFPSSLTEAKLKDIL 251
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-----------KP 304
++G I S + + G V F E+A++A+ ++ K I S P
Sbjct: 252 EKYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCP 311
Query: 305 LYVAVAQRKEERRARLQAQFSQM 327
Y+ A+R++ER ++ Q +
Sbjct: 312 FYIQKAERRKEREETIRKQLEAL 334
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+F+KN S+ L D +G I S + + + GF V FE E A A++ L
Sbjct: 232 NVFVKNFPSSLTEAKLKDILEKYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENL 291
Query: 102 NGMLI------NDKQVFVGHFL------RKQERETV----------AIKTKFNNVFVKNL 139
+ I D V F RK+ ET+ I +K NN+++ ++
Sbjct: 292 HNKHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEALSLKGINSK-NNLYIAHI 350
Query: 140 DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199
E+ ++++++ +F ++GTI S + + +K FG++ F+ ++AA A EA++G D+
Sbjct: 351 PETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFKTPEEAAAAFEAMDGTLLDN 410
Query: 200 REWYVGKAQKKSEREQE 216
+ + + K+ER E
Sbjct: 411 SKLRISFYKAKNERRAE 427
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 134/186 (72%), Gaps = 2/186 (1%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I+IKNL++SID+KA++DTFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQF 221
+M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 222 EQAMKE 227
E+ ++
Sbjct: 294 EERKRQ 299
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 14/201 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 313 KEERRARLQAQFSQMRPVAMG 333
K ER+ + + + + G
Sbjct: 282 KAERQQEINRKLEERKRQKAG 302
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 210/446 (47%), Gaps = 89/446 (19%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A+ LNF L+ + IRIM RDP R+S NI + L L DTF FG
Sbjct: 302 AEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSDPRNIVVTGLPADTTSVHLRDTFEQFGK 361
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI-NDKQVFVGHFL-RKQERET 124
ILSCK D SG+ +GFGFV FE+ + A+ AI + NG D+++ V F RKQ +
Sbjct: 362 ILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQE 421
Query: 125 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV----MRDGDGKSKCFGFVNF 179
+TK F NV+VK+L +E+L K+F YG ITS + ++D + + +GFVNF
Sbjct: 422 QEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNF 478
Query: 180 ENADDAAKAVEA----------LNGKKFDD---REWYVGKAQKKSEREQE---------- 216
+ + A K VE ++G F++ E +V ++ + E E
Sbjct: 479 ADTEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGK 538
Query: 217 LKG--QFEQAMKETVDK-FQGL--------------NLYI-------------------- 239
L G F++ +ETVDK GL LY+
Sbjct: 539 LSGFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQTKQERIRRLRRRLQER 598
Query: 240 -------------KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
KN +++ +E L++ F E G + KVMRD G+S+ GFV F+T E
Sbjct: 599 RRELRQRGGNLFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATRE 658
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPG 346
EA A+A+ N + + +P+YVA ++E R + Q Q Q + V M P PRMPM G
Sbjct: 659 EAESAIAKKNRQTLQDRPIYVAFHLTRQE-RCKQQPQHPQ-QGVYMYPQC-PRMPMGAFG 715
Query: 347 PSGLGQQFLYG--QAPPAI-IPPQAG 369
P Q + Q P A+ P QAG
Sbjct: 716 PGYYNPQMMMVNPQMPRAMNFPAQAG 741
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 21/270 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L ++ L + FSS G+++S ++ D + S G+G+V F E A+ A+ +
Sbjct: 249 SLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAMGQ 308
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN ++ + + + K ER+ ++ N+ V L TT L+ F ++G I S
Sbjct: 309 LNFHDLHGRHIRI----MKVERDPKKRRSDPRNIVVTGLPADTTSVHLRDTFEQFGKILS 364
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKG 219
+ D G+ + FGFV+FE+ A +A+ NGK DR+ V + + +REQE
Sbjct: 365 CKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQE--- 421
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSGISKGS 277
+E F N+Y+K+L D+E+L +LF +G ITS K +R +
Sbjct: 422 -----QEERTKNFT--NVYVKSLRRDADEEELGKLFEPYGDITS-KALRTYKLKDTERPY 473
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
GFV F+ E A + + E G+M YV
Sbjct: 474 GFVNFADTEAAQKCVEE--GEMHQRDIFYV 501
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LA+ EQ+R LG+ LY V ++++ A K+TGMLL D +++LL S AL+
Sbjct: 1019 VTSQLAHMDEEQRRGYLGDMLYHRVAGIDKERAPKITGMLLAYDAGHLMNLLASDAALRE 1078
Query: 541 KVAEAMEVL 549
+V A +L
Sbjct: 1079 QVVLAQNIL 1087
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LA+ EQ+R LG+ L V ++++ A K+TGMLL D +++LL S AL+
Sbjct: 917 VTSQLAHMDEEQRRRYLGDMLCHRVASIDKERAPKITGMLLAYDAGHLMNLLVSDAALRE 976
Query: 541 KVAEAMEVL 549
+V A +L
Sbjct: 977 QVVLARNIL 985
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 292
G +LY+ +L +++ +L LFS G++ S +V RD + S G G+V F+ E+A A+
Sbjct: 247 GTSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAM 306
Query: 293 AEMNGKMIVSKPLYVAVAQRKEERR 317
++N + + + + +R ++R
Sbjct: 307 GQLNFHDLHGRHIRIMKVERDPKKR 331
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 134/186 (72%), Gaps = 2/186 (1%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I+IKNL++SID+KA+++TFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+K+N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQF 221
+M D +G+S+ FGFV FEN A AV L+GK+ D ++ YV +A K+ER+QE+ +
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 287
Query: 222 EQAMKE 227
E+ ++
Sbjct: 288 EERKRQ 293
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + + F +G I + V +D +G S+ +GFV+F++ + A A+E +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 215
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVAF P+ A A+ ++GK + +K LYVA A
Sbjct: 216 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALS 275
Query: 313 KEERRARLQAQFSQMRPVAMG 333
K ER+ + + + + G
Sbjct: 276 KAERQQEINRKLEERKRQKAG 296
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 307 VAVAQRKEERRARLQAQFSQ 326
VA+AQRKEER+A L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 15/140 (10%)
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDEST 143
A++++NG ++ K +FVG +K ER+ +K KF N+++KNLD++
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQ-AELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
DE L+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + Y
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 204 VGKAQKKSEREQELKGQFEQ 223
V AQ+K ER+ L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 324 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 381
Query: 537 ALKAKVAEAMEVLRS 551
+L++KV EA+ VL++
Sbjct: 382 SLRSKVDEAVAVLQA 396
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 108
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNL 139
NG ++ K ++V RK+ER K N +++ +
Sbjct: 109 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRV 141
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 135/186 (72%), Gaps = 2/186 (1%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I+IKNL++SID+KA++DTFS+FGNIL+C +A D G S+G+GFV F+++E+A+ AI+K+N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQF 221
+M D +G+S+ FGFV FE+ A AV L+GK+ D ++ YV +A K+ER+QE+ +
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 286
Query: 222 EQAMKE 227
E+ ++
Sbjct: 287 EERKRQ 292
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 214
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVAF +P+ A A+ ++GK + +K LYVA A
Sbjct: 215 MFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 274
Query: 313 KEERRARLQAQFSQMRPVAMG 333
K ER+ + + + + G
Sbjct: 275 KAERQQEINRKLEERKRQKAG 295
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 134/186 (72%), Gaps = 2/186 (1%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I+IKNL++SID+KA+++TFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+K+N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQF 221
+M D +G+S+ FGFV FEN A AV L+GK+ D ++ YV +A K+ER+QE+ +
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINRKL 290
Query: 222 EQAMKE 227
E+ ++
Sbjct: 291 EERKRQ 296
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + + F +G I + V +D +G S+ +GFV+F++ + A A+E +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 218
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVAF P+ A A+ ++GK + +K LYVA A
Sbjct: 219 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 278
Query: 313 KEERRARLQAQFSQMRPVAMG 333
K ER+ + + + + G
Sbjct: 279 KNERQQEINRKLEERKRQKAG 299
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 134/186 (72%), Gaps = 2/186 (1%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I+IKNL++SID+KA++DTFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+K+N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
GML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQF 221
+M D +G+S+ FGFV FE+ A AV L+GK+ D ++ YV +A K+ER+QE+ +
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 283
Query: 222 EQAMKE 227
E+ ++
Sbjct: 284 EERKRQ 289
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 211
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 312
+F +G ITS K+M D G S+ GFVAF +P+ A A+ ++GK + +K LYVA A
Sbjct: 212 MFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 271
Query: 313 KEERRARLQAQFSQMRPVAMG 333
K ER+ + + + + G
Sbjct: 272 KAERQQEINRKLEERKRQKAG 292
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 120/175 (68%), Gaps = 3/175 (1%)
Query: 27 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFV 86
M+SHRDP++R+SG GN+++KNLD++ID+KAL+DTFS FGNILSCK+A G+S+GFGFV
Sbjct: 1 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 60
Query: 87 QFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDE 146
FE+ ESA+ AI KLNGM I +K V+V F + ER K F NV++K++ S +E
Sbjct: 61 HFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTNVYIKHIPASWNEE 119
Query: 147 DLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
+K+ FG +G ITS V D G+ F FVN+ + A AVE ++GK + E
Sbjct: 120 KIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRNEE 172
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
NV+VKNLD + ++ L F +G I S V DGKS+ FGFV+FE+ + A A+ L
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
NG + ++ YV +K +ER F N+YIK++ S ++EK+K
Sbjct: 76 NGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKHIPASWNEEKIK 122
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
E F FG ITS V DP G + FV ++ E+A A+ EM+GK +
Sbjct: 123 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDGKDV 168
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N+Y+KNL +ID++ L + FS FG I SCKV P G S+G GFV F + E A A+A++
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 296 NGKMIVSKPLYVAVAQRKEER 316
NG I K +YVA ++ ER
Sbjct: 76 NGMQIGEKTVYVAPFKKTAER 96
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 150/448 (33%), Positives = 206/448 (45%), Gaps = 89/448 (19%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A+ LNF L+ + IRIM RDP R+SG GNIFI L L DTF FG
Sbjct: 133 AEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGK 192
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI-NDKQVFVGHFL-RKQERET 124
ILSCK D SG+ +GFGFV FE+ + A+ AI + NG D+++ V F RKQ +
Sbjct: 193 ILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQE 252
Query: 125 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV----MRDGDGKSKCFGFVNF 179
+TK F NV+VK+L +E+L K+F YG ITS + ++D + + +GFVNF
Sbjct: 253 QEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNF 309
Query: 180 ENADDAAKAVEA----------------LNGKKFDDREWYVGK-AQKKSEREQ------E 216
+ + A K VE GKK +D V + A + ER +
Sbjct: 310 ADTEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGK 369
Query: 217 LKG--QFEQAMKETVDK-FQGLNLYIKNLGDSIDDEKL---------------------- 251
L G F++ +ETVDK GL ++ D I KL
Sbjct: 370 LSGFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRRLQER 429
Query: 252 -------------------------KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
++ F E G + S KVMRD G+S+ GFV F+T E
Sbjct: 430 RRELRQRGGNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATRE 489
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERRAR--LQAQFSQMRPVAMGPSVPPRMPMYP 344
EA A+A+ N + + +P+YVA ++ER+AR Q + + M P P MPM
Sbjct: 490 EAESAIAKKNRQPLQDRPIYVAFHLTRQERQARKQQQHPQHPQQGMYMYPQYPG-MPMGA 548
Query: 345 PGPSGLGQQFLYG--QAPPAI-IPPQAG 369
GP Q + Q P A+ P QAG
Sbjct: 549 FGPGYYNPQMMMVNPQMPRAMNFPAQAG 576
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 139/279 (49%), Gaps = 21/279 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENK 91
P+ + ++++ +L ++ L + FSS G+++S ++ D +S G+G+V F
Sbjct: 71 PANPQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKA 130
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
E A+ A+ +LN ++ + + + K ER+ ++ N+F+ L TT L+
Sbjct: 131 EDAEAAMGQLNFHDLHGRHIRI----MKVERDPKKRRSGVGNIFISGLPADTTSVHLRDT 186
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKK 210
F ++G I S + D G+ + FGFV+FE+ A +A+ NGK DR+ V + +
Sbjct: 187 FEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPR 246
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+REQE +E F N+Y+K+L D+E+L +LF +G ITS K +R
Sbjct: 247 KQREQE--------QEERTKNF--TNVYVKSLRRDADEEELGKLFEPYGDITS-KALRTY 295
Query: 271 --SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
+ GFV F+ E A + + E G+M YV
Sbjct: 296 KLKDTERPYGFVNFADTEAAQKCVEE--GEMHQRDIFYV 332
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L +++ +L LFS G++ S +V RD + S G G+V F+ E+A A+ +
Sbjct: 80 SLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMGQ 139
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N + + + + +R ++R
Sbjct: 140 LNFHDLHGRHIRIMKVERDPKKR 162
>gi|384248056|gb|EIE21541.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 537
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 165/512 (32%), Positives = 242/512 (47%), Gaps = 105/512 (20%)
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+E V T+ +VFV L + E LK++FG G + SAVVMRD G S+ FGFVNF
Sbjct: 14 QEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTK 73
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL---NLY 238
AD+A +A++ N W V KA+K+ + ++ GQ + QGL NL+
Sbjct: 74 ADEADRAIQQFNKIPHCAGTWLVRKAEKR--KPEQKAGQVSE---------QGLDLCNLF 122
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNG 297
I+ + I +L+ +F FG + S K++ DP +G SK +GF+ F+ PEEA+RA+ EMNG
Sbjct: 123 IRGVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNG 182
Query: 298 KMIVSKPLYVAVAQRK--EERRARLQAQFSQMRPVAMGPSVPPRM----------PMYPP 345
K + SK L+V +AQ++ + + + F Q A PS P M P YP
Sbjct: 183 KQVGSKRLFVTLAQKRATTDPQGIIHPPFEQ---SAAQPSTPTGMAYFMPMSGMAPQYPQ 239
Query: 346 GPSGLGQQFLYGQAPPAIIP--PQA---GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 400
G G YG PP ++P PQA G+G QLV G PM F Q
Sbjct: 240 GAHGHPAFQPYGMYPPGMVPIHPQAYQQGYGPPPQLV----WQGMPMAAF---------Q 286
Query: 401 GQRPGGRRGAGPVQQTQQPLPIMPHQMPP----------------RGHAYRYPLGRN--- 441
G PG ++ A P ++Q + M G YR +GR
Sbjct: 287 GMPPGYQQ-ADPRAISRQQQAQQYYMMTSGQDGTYFDMASNSFMHSGRGYRSHMGRGAAT 345
Query: 442 --------MQDFPFDMGAGSM----LPVPVDMGAG---IPRRDASVG-----QPMPITAL 481
Q FP + + PV V + + RRD + G P L
Sbjct: 346 PRGGGRRGRQLFPEPPASNHLGQPRAPVKVPLTVNSKPVARRDVAPGAAPKDAPTNTKDL 405
Query: 482 STALANASPEQ--QRTLLGESLYPLVEQLE--RDAAAKVTGMLLEMDQTEVLHLLESPEA 537
LA A+P++ + +++G+ L+ LV+ L+ +D +AK+TGMLLEM + E+LH+LE A
Sbjct: 406 VARLA-ATPDKLVRVSMMGDLLFTLVQGLQPAKD-SAKITGMLLEMTEPEILHILEDRAA 463
Query: 538 LKAK-----------VAEAMEVLRSVAQQQAN 558
L K V EA+ VL++ ++A
Sbjct: 464 LIKKARHPSHSGICSVDEALGVLKAAGYKEAK 495
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 15/194 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++F+ L + + L + F G + S + D G S+GFGFV F + A AI +
Sbjct: 25 SVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQF 84
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKT--------KFNNVFVKNLDESTTDEDLKKIFG 153
N + +RK E+ K N+F++ ++ + L+ +F
Sbjct: 85 NKI----PHCAGTWLVRKAEKRKPEQKAGQVSEQGLDLCNLFIRGVEPEISSIRLQSMFE 140
Query: 154 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
+G + S+ ++ D G SKC GF+ F ++AA+A+ +NGK+ + +V AQK++
Sbjct: 141 AFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQVGSKRLFVTLAQKRAT 200
Query: 213 REQE--LKGQFEQA 224
+ + + FEQ+
Sbjct: 201 TDPQGIIHPPFEQS 214
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 160/290 (55%), Gaps = 18/290 (6%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + ++ L D FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N L+ +K + + +R+ ++ NVF+KNLD + ++ + F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G SK +GFV+FE + A +++ +NG + ++ YVGK + E+E
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQE----- 172
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+ E F N+Y+KN + DDEKLKE F +G ITS KVM G SKG GF
Sbjct: 173 -----LGEKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 225
Query: 280 VAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
VAF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 226 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 275
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
+++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 554 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 613
Query: 541 KVAEAMEVLR 550
KV EA+ VL+
Sbjct: 614 KVEEAVAVLQ 623
>gi|2213871|gb|AAB61594.1| poly(A)-binding protein, partial [Mesembryanthemum crystallinum]
Length = 176
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 128/178 (71%), Gaps = 11/178 (6%)
Query: 404 PGGRRGAG-PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP-VPVDM 461
P GRR G PVQQ+QQ M Q YRYP R + D P G +LP V DM
Sbjct: 1 PTGRRAGGAPVQQSQQQPIPMMQQQMMPRGRYRYPPARGLPDAPLPGVTGGVLPGVQYDM 60
Query: 462 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 521
G G+P RD S +P+ L+T LANA+PEQQR LLGE+LYPLVEQLE + AAKVTGMLL
Sbjct: 61 G-GMPIRDLS--PTVPVGTLATLLANATPEQQRLLLGENLYPLVEQLEPEMAAKVTGMLL 117
Query: 522 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ------ANNPADQLASLSLNENL 573
EMDQTEVLHLLESPEALK+KVAEAMEVLR+VAQQQ ++NPADQLA+LSLN+NL
Sbjct: 118 EMDQTEVLHLLESPEALKSKVAEAMEVLRNVAQQQQQQQQPSSNPADQLAALSLNDNL 175
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQ
Sbjct: 61 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 312 RKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 349
RKEER+A L Q+ Q P P P PSG
Sbjct: 120 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 157
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDED 147
+NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 59
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV A
Sbjct: 60 LRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 118
Query: 208 QKKSEREQELKGQFEQAM 225
Q+K ER+ L Q+ Q M
Sbjct: 119 QRKEERQAHLTNQYMQRM 136
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++
Sbjct: 45 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 103
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG ++ K ++V RK+ER+
Sbjct: 104 NGRIVATKPLYVALAQRKEERQ 125
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 99/119 (83%), Gaps = 1/119 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 6/187 (3%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQEL 217
ERE EL
Sbjct: 177 KEREAEL 183
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 312 RKEERRARLQAQ 323
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|262192741|gb|ACY30440.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 99
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 89/98 (90%)
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
DPSG+SKGSGFVAFSTPEEASRAL+EMNGKM+VSKPLYVA+AQRKEERRARLQAQFSQMR
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 60
Query: 329 PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
P+AM SV PRMPMYPPG GLGQQ YGQ PA++PP
Sbjct: 61 PIAMASSVAPRMPMYPPGGHGLGQQIFYGQPQPAMLPP 98
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 166 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
D G SK GFV F ++A++A+ +NGK + YV AQ+K ER L+ QF Q
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 58
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 75 DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
D SG SKG GFV F E A A+ ++NG ++ K ++V RK+ER
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRA 50
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 99/119 (83%), Gaps = 1/119 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 68 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 127
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 128 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 185
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 110/204 (53%), Gaps = 6/204 (2%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 66
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 67 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 122
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 123 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181
Query: 211 SEREQELKGQFEQAMKETVDKFQG 234
ERE EL + ++ V + G
Sbjct: 182 KEREAELGARAKEFYPYDVPDYAG 205
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 18/198 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 77 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 120
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 121 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179
Query: 312 RKEERRARLQAQFSQMRP 329
++ER A L A+ + P
Sbjct: 180 SRKEREAELGARAKEFYP 197
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 135/234 (57%), Gaps = 32/234 (13%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RALD +NF + + IRIM+SHRDP +R+SG GNIFIKNL+ SID+KAL+DTFS+FG+
Sbjct: 65 AERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGS 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
ILS K+ + G S+GFGFV FE E+AQ AI+ +NGML+ND++V R ++A
Sbjct: 125 ILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKV------RSDYPWSLA 177
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+L +T I+S + SK FGFV F + ++A
Sbjct: 178 -----------SLCPAT-------------LISSCFQVMTESSHSKGFGFVCFSSPEEAT 213
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV-DKFQGLNLYI 239
KAV +NG+ + YV AQ+K ER+ L Q+ + + +V FQ Y+
Sbjct: 214 KAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTSYL 267
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 150/536 (27%), Positives = 241/536 (44%), Gaps = 110/536 (20%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + R+ ++ N+F+KNL+ S ++ L F +G+I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ V+ + G S+ FGFV+FE + A KA+ +NG +DR + +S+ L
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDR-------KVRSDYPWSLASL 179
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ I+SC + S SKG GFV
Sbjct: 180 CPATL-----------------------------------ISSCFQVMTESSHSKGFGFV 204
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV-PPR 339
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ + ++ S P
Sbjct: 205 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPT 264
Query: 340 MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRP---------AGAPMPNF 390
+ P Q Y A A + P + Q P + AP P
Sbjct: 265 SYLLPAVHQSTTQTMYYSSASIAPMQPDPRWTAQPHGPSSTCPPAASVVQPLSTAPHPCI 324
Query: 391 F----------VP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY 436
VP VV+ G Q PGG P Q P++ H+ H+
Sbjct: 325 HLSSASQASSQVPHTQRVVNIGTQTTGPGGEGSCIPGQ------PLLAHRGSSAVHS--- 375
Query: 437 PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASP-EQQRT 495
+Q+ S + VP QP+ ++ L +A+P +Q+
Sbjct: 376 --AHGVQE--------STVYVPGH-------------QPLTVSML-----DAAPLHEQKQ 407
Query: 496 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
++GE LY L+ K+TGMLLEMD E+L LLESPE+L AK+ EA+ VL++
Sbjct: 408 MIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLKA 463
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 26/177 (14%)
Query: 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAK 187
++++V +L T+ L ++F GTI S V RD +S + ++NF+ DA +
Sbjct: 8 CSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLG 243
A++ +N + +KGQ + M D + G+ N++IKNL
Sbjct: 68 ALDTMNF--------------------EMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLE 107
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
+SID++ L + FS FG+I S KV+ + G S+G GFV F T E A +A+ MNG ++
Sbjct: 108 NSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 163
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 148/250 (59%), Gaps = 27/250 (10%)
Query: 101 LNGMLINDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
++GML+N VFVG F +E+E + + K + V G +
Sbjct: 1 MDGMLLNGLNVFVGRFRSPKEQEAELGARAKESKV---------------------GPAS 39
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V+ D GKSK FGFV+FE +D A++ +NGK+F + Y+ A KK E + ELK
Sbjct: 40 SVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVEEQTELKC 98
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+FEQ ++ + ++QG N+ +KNL +SIDDE+L++ FS FG I S VM + G SK GF
Sbjct: 99 KFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMME-GGCSKRFGF 157
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP-P 338
V FS+PEE ++A+ MNGK++ SKPL+VA+AQ KE+R A Q+ M+ +A +VP P
Sbjct: 158 VCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQY--MQKMASVRAVPHP 215
Query: 339 RMPMYPPGPS 348
+ Y P PS
Sbjct: 216 VINPYQPAPS 225
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S G S K+ TD G+SKGFGFV FE E Q A+D +NG + Q ++ +K E
Sbjct: 33 SKVGPASSVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVE 91
Query: 122 RETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
+T +K KF NV VKNLDES DE L+K F +G I SA VM +G
Sbjct: 92 EQT-ELKCKFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG- 149
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
G SK FGFV F + ++ AKAV A+NGK + +V AQ K +R Q+ Q M
Sbjct: 150 GCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQKM 206
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
I + N+ +KNLD+SID + L FS FG I S + +G G SK FGFV F + E
Sbjct: 108 ITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG-GCSKRFGFVCFSSPEEV 166
Query: 95 QNAIDKLNGMLINDKQVFVGHFLRKQER 122
A+ +NG ++ K + V K++R
Sbjct: 167 AKAVTAMNGKIVASKPLHVALAQCKEQR 194
>gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
gi|74697505|sp|Q8SR30.1|PABP_ENCCU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
Length = 502
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 171/324 (52%), Gaps = 23/324 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+ L+N+ IR+M P TGNIF+KNL + K L D FS FG
Sbjct: 66 AERAIREYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGE 121
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAI---DKLNGMLINDKQVFVGHF---LRKQ 120
I+SCK+AT G+SKG+GFVQF+ K++A+ I L+G+L+ ++ V + ++K
Sbjct: 122 IVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKG 181
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
E + + F N F+KN ++ +L ++ YG +TS +GK K F F NFE
Sbjct: 182 ESKKTS--ATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFE 239
Query: 181 NADDAAKAVEALN-------GKKFDDREWYVGKAQKKSEREQELKGQFEQ-AMKETVDKF 232
N + A A++ L+ G+ +Y+ K Q+K ER +EL+ FEQ +M+ K
Sbjct: 240 NHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYK- 298
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292
NLYI N+ + E+L +F EFG ITS V D + K ++ +STPEEAS A+
Sbjct: 299 --KNLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAV 356
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
N + L VA + K ER
Sbjct: 357 ERGNEIYLDGNRLQVAYFKNKLER 380
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 133/309 (43%), Gaps = 35/309 (11%)
Query: 32 DPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 90
D S R S I++ L L FS+ G +LS K+ S F FV FEN
Sbjct: 4 DESKRASSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFEN 62
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDL 148
+E A+ AI + ++++Q+ V ++K ER ET N+FVKNL E T +DL
Sbjct: 63 EEDAERAIREYKHYELHNRQIRV---MKKDERPPET-------GNIFVKNLPEDFTGKDL 112
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE---ALNGKKFDDREWYVG 205
F +G I S V GKSK +GFV F+ A K ++ +L+G V
Sbjct: 113 DDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVE 172
Query: 206 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 265
+ ++ + K+T F N +IKN + +L EL +G +TS
Sbjct: 173 LYNPEIKKGES---------KKTSATFT--NCFIKNFPFDASEAELLELLERYGKVTSLF 221
Query: 266 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM-------IVSKPLYVAVAQRKEERRA 318
+G KG F F E A A+ ++G + Y+ QRKEER
Sbjct: 222 FPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAE 281
Query: 319 RLQAQFSQM 327
L+ F QM
Sbjct: 282 ELRKMFEQM 290
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 2 FMLSSAARALDVLNFTPLNNKSI---RIMYSHRDPSIRKSGT-------GNIFIKNLDKS 51
F AA+ + + NF+ L+ + RI+ +P I+K + N FIKN
Sbjct: 143 FKEKKAAKKV-IKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFD 201
Query: 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML------ 105
L + +G + S +G+ KGF F FEN ESA NAI L+G
Sbjct: 202 ASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGR 261
Query: 106 -INDKQVFVGHFLRKQER--------ETVAIK--TKFNNVFVKNLDESTTDEDLKKIFGE 154
+ ++ RK+ER E ++++ + N+++ N+ E E+L IF E
Sbjct: 262 DGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGFGCEELGSIFKE 321
Query: 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 214
+G ITS V DG K + ++ + ++A+ AVE N D V + K ER
Sbjct: 322 FGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERM 381
Query: 215 QE 216
+E
Sbjct: 382 KE 383
>gi|449329878|gb|AGE96146.1| polyadenylate-binding protein 2 [Encephalitozoon cuniculi]
Length = 502
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 171/324 (52%), Gaps = 23/324 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA+ L+N+ IR+M P TGNIF+KNL + K L D FS FG
Sbjct: 66 AERAIREYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGE 121
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAI---DKLNGMLINDKQVFVGHF---LRKQ 120
I+SCK+AT G+SKG+GFVQF+ K++A+ I L+G+L+ ++ V + ++K
Sbjct: 122 IVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKG 181
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
E + + F N F+KN ++ +L ++ YG +TS +GK K F F NFE
Sbjct: 182 ESKKTS--ATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFE 239
Query: 181 NADDAAKAVEALN-------GKKFDDREWYVGKAQKKSEREQELKGQFEQ-AMKETVDKF 232
N + A A++ L+ G+ +Y+ K Q+K ER +EL+ FEQ +M+ K
Sbjct: 240 NHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYK- 298
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292
NLYI N+ + E+L +F EFG ITS V D + K ++ +STPEEAS A+
Sbjct: 299 --KNLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAV 356
Query: 293 AEMNGKMIVSKPLYVAVAQRKEER 316
N + L VA + K ER
Sbjct: 357 ERGNEIYLDGNRLQVAYFKNKLER 380
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 133/309 (43%), Gaps = 35/309 (11%)
Query: 32 DPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 90
D S R S I++ L L FS+ G +LS K+ S F FV FEN
Sbjct: 4 DESKRASSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFEN 62
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDL 148
+E A+ AI + ++++Q+ V ++K ER ET N+FVKNL E T +DL
Sbjct: 63 EEDAERAIREYKHYELHNRQIRV---MKKDERPPET-------GNIFVKNLPEDFTGKDL 112
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE---ALNGKKFDDREWYVG 205
F +G I S V GKSK +GFV F+ A K ++ +L+G V
Sbjct: 113 DDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVE 172
Query: 206 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 265
+ ++ + K+T F N +IKN + +L EL +G +TS
Sbjct: 173 LYNPEIKKGES---------KKTSATFT--NCFIKNFPFDASEAELLELLERYGKVTSLF 221
Query: 266 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM-------IVSKPLYVAVAQRKEERRA 318
+G KG F F E A A+ ++G + Y+ QRKEER
Sbjct: 222 FPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAE 281
Query: 319 RLQAQFSQM 327
L+ F QM
Sbjct: 282 ELRKMFEQM 290
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 2 FMLSSAARALDVLNFTPLNNKSI---RIMYSHRDPSIRKSGT-------GNIFIKNLDKS 51
F AA+ + + NF+ L+ + RI+ +P I+K + N FIKN
Sbjct: 143 FKEKKAAKKV-IKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFD 201
Query: 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML------ 105
L + +G + S +G+ KGF F FEN ESA NAI L+G
Sbjct: 202 ASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGR 261
Query: 106 -INDKQVFVGHFLRKQER--------ETVAIK--TKFNNVFVKNLDESTTDEDLKKIFGE 154
+ ++ RK+ER E ++++ + N+++ N+ E E+L IF E
Sbjct: 262 DGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGFGCEELGSIFKE 321
Query: 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 214
+G ITS V DG K + ++ + ++A+ AVE N D V + K ER
Sbjct: 322 FGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERM 381
Query: 215 QE 216
+E
Sbjct: 382 KE 383
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 312 RKEERRARLQAQFSQ 326
RKEER+A L Q+ Q
Sbjct: 120 RKEERKAHLTNQYMQ 134
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 80/136 (58%), Gaps = 15/136 (11%)
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDED 147
+NG I+ K +FVG +K ER+ +K KF N+++KNLD++ DE
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQ-AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 59
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
L+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + YV A
Sbjct: 60 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 118
Query: 208 QKKSEREQELKGQFEQ 223
Q+K ER+ L Q+ Q
Sbjct: 119 QRKEERKAHLTNQYMQ 134
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG ++ K ++V RK+ER+
Sbjct: 104 NGRIVGSKPLYVALAQRKEERK 125
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 312 RKEERRARLQAQFSQ 326
RKEER+A L Q+ Q
Sbjct: 120 RKEERKAHLTNQYMQ 134
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 80/136 (58%), Gaps = 15/136 (11%)
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDED 147
+NG I+ K +FVG +K ER+ +K KF N+++KNLD++ DE
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQ-AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 59
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
L+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + YV A
Sbjct: 60 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 118
Query: 208 QKKSEREQELKGQFEQ 223
Q+K ER+ L Q+ Q
Sbjct: 119 QRKEERKAHLTNQYMQ 134
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG ++ K ++V RK+ER+
Sbjct: 104 NGRIVGSKPLYVALAQRKEERK 125
>gi|123445099|ref|XP_001311313.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121893117|gb|EAX98383.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 419
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 171/326 (52%), Gaps = 21/326 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSS 63
A RAL +N+T L+ IRI++S DP+ + K + I +LD+ I+ LHD FS+
Sbjct: 60 ARRALLEVNYTKLDGVPIRILWS--DPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSN 117
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL---RKQ 120
FG ++SCKI +G+ +G G+V F +E A + L IN K + + + RK
Sbjct: 118 FGEVVSCKIPL-TNGKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIVLYCKPTRKN 176
Query: 121 ERETVAIKTKFNNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
ET F NVF+K L T+EDL K+ ++G + + + DG S FGF N
Sbjct: 177 SEET------FTNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFGFCN 230
Query: 179 FENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 236
F DA KAVE+LNGK + E+ +AQ K+ER+ L Q + + ++ +G N
Sbjct: 231 FMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETRGRN 290
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAE 294
LYIKN+ SI+DE+ +E F +FG + C + R+ SKG GFV F T E A AL
Sbjct: 291 LYIKNIDRSINDEEFEEYFKQFGEVEKCLISREAQEPHESKGFGFVLFKTKEGAQNALKN 350
Query: 295 MNGKMIVSKPLYVAVAQRKEERRARL 320
+ K LYV KEER L
Sbjct: 351 TIITPLKGKILYVNYFIMKEEREHIL 376
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 127/296 (42%), Gaps = 34/296 (11%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDKL 101
+F+ +L +D + + F +GN S I K F FV FE+ E A+ A+ ++
Sbjct: 8 LFVGDLPGYVDGNFIKELFREYGNFPSGTITVKKHKSLDKSFAFVTFESHELARRALLEV 67
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N ++ + + L AIK F + + +LDE L IF +G + S
Sbjct: 68 NYTKLDGVPIRI---LWSDPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEVVSC 124
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAK-----AVEALNGKKFDDREWYVGKAQKKSEREQE 216
+ +GK + G+V F +DA + A ++NGK Y +K SE
Sbjct: 125 KIPL-TNGKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIV-LYCKPTRKNSE---- 178
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSI--DDEKLKELFSEFGTITSCKVMRDPSGIS 274
ET N++IK L +E L +L +FG + + + G S
Sbjct: 179 ----------ETFT-----NVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTS 223
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPL-YVAV-AQRKEERRARLQAQFSQMR 328
GF F ++A +A+ +NGKM +S +V AQ K ER+A L Q ++ R
Sbjct: 224 SEFGFCNFMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFR 279
>gi|62321231|dbj|BAD94406.1| putative poly(A) binding protein [Arabidopsis thaliana]
Length = 154
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/163 (57%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 420 LPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 478
+P M QM PRG YRYP G RNM D P G M+PV DM QPM
Sbjct: 1 MPYMQPQMMPRGRGYRYPSGGRNMPDGPM---PGGMVPVAYDMNV------MPYSQPMSA 51
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 538
L+T+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGMLLEMDQTEVLHLLESPEAL
Sbjct: 52 GQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEAL 111
Query: 539 KAKVAEAMEVLRSVAQ--------QQANNPADQLASLSLNENL 573
AKV+EA++VLR+V Q ++ +P+D LASLS+N++L
Sbjct: 112 NAKVSEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSINDHL 154
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 130/389 (33%), Positives = 181/389 (46%), Gaps = 83/389 (21%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A+ LNF L+ + IRIM RDP R+SG GNIFI L L DTF FG
Sbjct: 124 AEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGK 183
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI-NDKQVFVGHFL-RKQERET 124
ILSCK D SG+ +GFGFV FE+ + A+ AI + NG D+++ V F RKQ +
Sbjct: 184 ILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQE 243
Query: 125 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV----MRDGDGKSKCFGFVNF 179
+TK F NV+VK+L +E+L K+F YG ITS + ++D + + +GFVNF
Sbjct: 244 QEERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNF 300
Query: 180 ENADDAAKAVEA----------------LNGKKFDDREWYVGK-AQKKSEREQ------E 216
+ + A K VE GKK +D V + A + ER +
Sbjct: 301 ADTEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGK 360
Query: 217 LKG--QFEQAMKETVDK-FQGLNLYIKNLGDSIDDEKL---------------------- 251
L G F++ +ETVDK GL ++ D I KL
Sbjct: 361 LSGFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRRLQER 420
Query: 252 -------------------------KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
++ F E G + S KVMRD G+S+ GFV F+T E
Sbjct: 421 RRELRQRGGNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATRE 480
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEE 315
EA A+A+ N + + +P+YVA ++E
Sbjct: 481 EAESAIAKKNRQPLQDRPIYVAFHLTRQE 509
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 139/279 (49%), Gaps = 21/279 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENK 91
P+ + ++++ +L ++ L + FSS G+++S ++ D +S G+G+V F
Sbjct: 62 PANPQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKA 121
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
E A+ A+ +LN ++ + + + K ER+ ++ N+F+ L TT L+
Sbjct: 122 EDAEAAMGQLNFHDLHGRHIRI----MKVERDPKKRRSGVGNIFISGLPADTTSVHLRDT 177
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKK 210
F ++G I S + D G+ + FGFV+FE+ A +A+ NGK DR+ V + +
Sbjct: 178 FEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPR 237
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+REQE +E F N+Y+K+L D+E+L +LF +G ITS K +R
Sbjct: 238 KQREQE--------QEERTKNF--TNVYVKSLRRGADEEELGKLFEPYGDITS-KALRTY 286
Query: 271 --SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
+ GFV F+ E A + + E G+M YV
Sbjct: 287 KLKDTERPYGFVNFADTEAAQKCVEE--GEMHQRDIFYV 323
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L +++ +L LFS G++ S +V RD + S G G+V F+ E+A A+ +
Sbjct: 71 SLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMGQ 130
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N + + + + +R ++R
Sbjct: 131 LNFHDLHGRHIRIMKVERDPKKR 153
>gi|303391122|ref|XP_003073791.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
gi|303302939|gb|ADM12431.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
Length = 410
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 177/330 (53%), Gaps = 29/330 (8%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI- 98
TGNIF+KNL ++ K L D FS FG I SCK+AT G+SKG+GFVQF+ K++A+ I
Sbjct: 10 TGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGFVQFKEKKAAKKVIK 69
Query: 99 --DKLNGMLINDKQVFVGHF---LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
+ LNG+++ + ++ V + ++K E + T F N F+KN +E+L+++
Sbjct: 70 NFNNLNGLMLGENKIVVELYNPEMKKGENKKTP--TMFTNCFIKNFPVDVEEENLRELLE 127
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK-KFDDRE----WYVGKAQ 208
+YG +TS DGK K F F NFE+ + A A++ L+ F D E +Y+ K Q
Sbjct: 128 KYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQKGQ 187
Query: 209 KKSEREQELKGQFEQ-AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 267
+K ER +EL+ FEQ +M+ K NLYI N+ + E+L +F EFG ITS V
Sbjct: 188 RKEERAEELRKTFEQLSMQGQSYK---KNLYITNIPEGFGAEELNNIFREFGNITSMSVG 244
Query: 268 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
D + K +V +STPEEAS A+ N + L VA + K ER +
Sbjct: 245 TDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMKE-----KEF 299
Query: 328 RPVAMGPSVPPRMPMYPPG----PSGLGQQ 353
+ P++P MY G P+G ++
Sbjct: 300 GSIGYKPNIP---YMYNQGVNFVPNGFKRE 326
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 101/224 (45%), Gaps = 34/224 (15%)
Query: 117 LRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 174
+RK ER ET N+FVKNL E+ T +DL F +G ITS V GKSK +
Sbjct: 1 MRKDERPPET-------GNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGY 53
Query: 175 GFVNFENADDAAKAVEA---LNGKKFDDREWYV---GKAQKKSEREQELKGQFEQAMKET 228
GFV F+ A K ++ LNG + + V KK E K+T
Sbjct: 54 GFVQFKEKKAAKKVIKNFNNLNGLMLGENKIVVELYNPEMKKGEN------------KKT 101
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 288
F N +IKN +++E L+EL ++G +TS G KG F F + E A
Sbjct: 102 PTMF--TNCFIKNFPVDVEEENLRELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECA 159
Query: 289 SRALAEMN-----GKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327
A+ ++ G +P Y+ QRKEER L+ F Q+
Sbjct: 160 LNAIKNLHETFPFGDGESGEPFYIQKGQRKEERAEELRKTFEQL 203
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 2 FMLSSAARALDVLNFTPLNNKSI---RIMYSHRDPSIRKSGT-------GNIFIKNLDKS 51
F AA+ + + NF LN + +I+ +P ++K N FIKN
Sbjct: 58 FKEKKAAKKV-IKNFNNLNGLMLGENKIVVELYNPEMKKGENKKTPTMFTNCFIKNFPVD 116
Query: 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML-INDKQ 110
++ + L + +G + S T G+ KGF F FE+ E A NAI L+ D +
Sbjct: 117 VEEENLRELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGE 176
Query: 111 ----VFVGHFLRKQERETVAIKT----------KFNNVFVKNLDESTTDEDLKKIFGEYG 156
++ RK+ER KT N+++ N+ E E+L IF E+G
Sbjct: 177 SGEPFYIQKGQRKEERAEELRKTFEQLSMQGQSYKKNLYITNIPEGFGAEELNNIFREFG 236
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
ITS V DG K + +V + ++A+ AVE N D V + K ER +E
Sbjct: 237 NITSMSVGTDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 296
>gi|147863122|emb|CAN82975.1| hypothetical protein VITISV_026120 [Vitis vinifera]
Length = 213
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/107 (71%), Positives = 85/107 (79%)
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
+VMRDP+GIS+GSGFVAFST +EASR LA+MNGKM+ SKPLYVA+AQ KE+RR RLQAQF
Sbjct: 103 QVMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQF 162
Query: 325 SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG 371
SQMRP AM PSV PRM MYPPG GLGQQ YGQ P + P G
Sbjct: 163 SQMRPTAMAPSVGPRMSMYPPGTPGLGQQLFYGQGPQLLSLPNQNLG 209
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
VMRD +G S+ GFV F A +A++ + +NGK + YV AQ K +R L+ QF
Sbjct: 104 VMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQFS 163
Query: 223 Q 223
Q
Sbjct: 164 Q 164
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 176/362 (48%), Gaps = 68/362 (18%)
Query: 26 IMYSH--RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGF 83
I Y H + ++K GN++++ L + L FS +G ++SCKI D G SKG+
Sbjct: 78 IEYEHVATEHELKKQLPGNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGY 137
Query: 84 GFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDE 141
GF+ F ++ AQ AID LNG+ ++ +FV H + K++R E K K+ N++VKN +
Sbjct: 138 GFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPD 197
Query: 142 STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
T E L ++FG+YG + S + + ++ + F+NF++ +DA +A E L+G F+
Sbjct: 198 DLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDG--FEIAP 255
Query: 202 WY---VGKAQKKSEREQELKGQFE--------QAMKETVD-------------------- 230
Y +GKA+++ +R Q ++ Q M +
Sbjct: 256 GYRLQLGKAERRKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLIST 315
Query: 231 ---------KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----------- 270
++Q NLYI +L D+ L ELF+ FG I S K+M P
Sbjct: 316 ATGLPIAGPQYQDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGE 375
Query: 271 --------SGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQRKEER--RAR 319
G S+G GFV F+ P +AS+AL MNG + S L V+ AQRKE + + R
Sbjct: 376 EDTESKSREGRSRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGR 435
Query: 320 LQ 321
L
Sbjct: 436 LH 437
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 146/308 (47%), Gaps = 28/308 (9%)
Query: 53 DHKALHDTFSSFGNI-----LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107
D L + + F N ++C++ G+ +S F +FE K+ + + L I
Sbjct: 21 DSAVLENLLAVFKNTYNYPEVNCEVLK-GNSESPKTVFARFEEKDHFEKFKEFLEQRDIE 79
Query: 108 DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
+ V H L+KQ N++V+ L +TT +DL +IF YG + S ++ D
Sbjct: 80 YEHVATEHELKKQLP---------GNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDD 130
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 227
G SK +GF+NF + +A KA++ LNG D +V K +R +EL+
Sbjct: 131 FGVSKGYGFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHISKRDRLKELE--------- 181
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287
+ K + NLY+KN D + EKL ++F ++G + S + + ++G F+ F + E+
Sbjct: 182 -MRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYAFINFKSHED 240
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP 347
A RA ++G I P Y + E R+ R+Q Q + +P + P P MP P
Sbjct: 241 AVRAQENLDGFEIA--PGYRLQLGKAERRKDRMQNQMNSYKPNYL-PFQPQYMPPQPEHS 297
Query: 348 SGLGQQFL 355
+ L F+
Sbjct: 298 NNLYPSFI 305
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 136 VKNLDESTTDEDLKKIFGE---YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+K ++S E+L +F Y + V+ G+ +S F FE D K E L
Sbjct: 16 IKMYEDSAVLENLLAVFKNTYNYPEVNCEVL--KGNSESPKTVFARFEEKDHFEKFKEFL 73
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+ D E+ + E ELK Q NLY++ L + + L
Sbjct: 74 EQR---DIEY------EHVATEHELKKQLPG------------NLYVRGLLPTTTSDDLV 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+FS +G + SCK++ D G+SKG GF+ F+ EA +A+ +NG + L+V
Sbjct: 113 RIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHIS 172
Query: 313 KEERRARLQ 321
K +R L+
Sbjct: 173 KRDRLKELE 181
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 145/238 (60%), Gaps = 6/238 (2%)
Query: 7 AARALDVLNFTP---LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
A +A +LN+ L+ K +RIM+ +D S+R SGTGN+FIKN+ + D+K+L FS
Sbjct: 89 AQKAFKLLNYYTDETLHYKPLRIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQ 148
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCKIA D + +S G+GFV ++ ++ ++ AI+K+N I+ +++FVG F+ K +R
Sbjct: 149 FGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRN 208
Query: 124 TV-AIKTKFNNVFVKN-LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
K +F NV++KN L ++ + +K +F +G ITS + + + F FVNFEN
Sbjct: 209 NRNNSKLRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPKANEAPLG-FAFVNFEN 267
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+DA A+ +NGKK + YVGKA+ + ER++ L +F V ++ L +I
Sbjct: 268 PEDAEDAIFKMNGKKIKGKTLYVGKAETRIERQRRLAKKFLDKKMSKVCFYKKLMFFI 325
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 145/292 (49%), Gaps = 31/292 (10%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKL 101
+++ +L ++ +L FS G + S +I D S G S+G+ +V F N + AQ A L
Sbjct: 37 LYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKLL 96
Query: 102 NGMLINDKQVFVGHF-----LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
N D+ + H+ + Q+ +++ N+F+KN+ ++ L K+F ++G
Sbjct: 97 N--YYTDETL---HYKPLRIMWVQKDKSLRFSGT-GNLFIKNIPRRYDNKSLSKLFSQFG 150
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
I S + D + +S +GFV+++ D+ KA+E +N D + +VG K +R
Sbjct: 151 KILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRNNR 210
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKN-LGDSIDDEKLKELFSEFGTITSC---KVMRDPSG 272
K + N+YIKN L + ++ +K+LF FG ITS K P G
Sbjct: 211 -----------NNSKLRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPKANEAPLG 259
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
+ FV F PE+A A+ +MNGK I K LYV A+ + ER+ RL +F
Sbjct: 260 FA----FVNFENPEDAEDAIFKMNGKKIKGKTLYVGKAETRIERQRRLAKKF 307
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 18/198 (9%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
++V +L + L KIF + G + S + RD G S+ + +VNF N DA KA + L
Sbjct: 37 LYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKLL 96
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEKL 251
N +Y + + + L+ + Q K+ +F G NL+IKN+ D++ L
Sbjct: 97 N--------YYTDE----TLHYKPLRIMWVQ--KDKSLRFSGTGNLFIKNIPRRYDNKSL 142
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA--V 309
+LFS+FG I SCK+ D + S G GFV + +++ +A+ +MN I + ++V +
Sbjct: 143 SKLFSQFGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFI 202
Query: 310 AQRKEERRARLQAQFSQM 327
++ K R + +F+ +
Sbjct: 203 SKVKRNNRNNSKLRFTNV 220
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 142/223 (63%), Gaps = 6/223 (2%)
Query: 4 LSSAARALDVLN--FTPLNNKS-IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
A RAL LN F P K +R+M+ +D + KSG GNIFIKNL D K+L
Sbjct: 91 FKDAERALTKLNYYFDPEKMKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKM 150
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
F FG ILSCK+A D +G S G+GFV FE++++++ AI+K NG++I +K++FVG FL ++
Sbjct: 151 FLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRK 210
Query: 121 ERETVAI-KTKFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
+R+ + KT F N+++KN+ E+ + +K +F +G ITS + ++ + +K F FVN
Sbjct: 211 DRKNFGMTKTGFTNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKNNNF-TKGFAFVN 269
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
+E ++A A+ +N KK + YVGKA+ K ER++ L+ +F
Sbjct: 270 YELPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKF 312
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 157/305 (51%), Gaps = 32/305 (10%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +L ++ + + F + G + S KI D SG+ G+ FV+FEN + A+ A+ KL
Sbjct: 42 LYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKL 101
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKF------NNVFVKNLDESTTDEDLKKIFGEY 155
N +K ++K R K KF N+F+KNL + L+K+F ++
Sbjct: 102 NYYFDPEK-------MKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDF 154
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
G I S V D +G S +GFV+FE+ + A+E NG +++ +VG + +R+
Sbjct: 155 GKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDRKN 214
Query: 216 ELKGQFEQAMKETVDKFQGL-NLYIKNLG-DSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
M +T G N+YIKN+ ++ ++ +K+LF FG ITS + ++ +
Sbjct: 215 -------FGMTKT-----GFTNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKN-NNF 261
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 333
+KG FV + PEEA A+ MN K I + LYV A+ K ER+ LQ +F + + +G
Sbjct: 262 TKGFAFVNYELPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKFLEKK---IG 318
Query: 334 PSVPP 338
P P
Sbjct: 319 PIEKP 323
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 153/563 (27%), Positives = 247/563 (43%), Gaps = 82/563 (14%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +AL+ NF L K +R+M + GN+F+KNL + +K L D FS++GN
Sbjct: 43 AEKALEGANFNILKGKEMRVMRQQLRFKQTCNPKGNLFVKNLPDLMTNKELLDKFSAYGN 102
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
ILSCK+A D +G+S +G+V F + Q + +N ++ + ++V + E+
Sbjct: 103 ILSCKVAFDKETGKSLHYGYVHFSDPNVTQKVLADMNKDVVEEGAMYVMEY----EKRMK 158
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
+ + +V N + T++ L+ +FG+YGTI S + K GFV F N D A
Sbjct: 159 DTSSDWVTCYVANFPTTLTEDGLRDLFGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSA 218
Query: 186 AKAVEALNGKKF-----DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
KAVE L + + YV + Q + ER + E+ KE V++ +G LY+
Sbjct: 219 VKAVEGLKDQVITVEGAEPMVLYVNRLQSREERASINQKILEEKKKEEVERTKGRFLYV- 277
Query: 241 NLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMNGK 298
GD +I E+L+E+F +G I SC + RD + K GFV T E A A+
Sbjct: 278 GFGDQTITLERLREIFQAYGNIESCSIARDKNTKELKPFGFVCMDTTENAQNAIRAFRES 337
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
+ L V +AQ +EER L+ + Q + V M Q+
Sbjct: 338 HDLK--LKVELAQTREERAKMLKERRKQTQGVVM--------------------QY---- 371
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 418
P+ + +P+ G G R + QQ QQ
Sbjct: 372 ---------------------------PVVQYTMPI------GMNMGNRMPSNKQQQQQQ 398
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-P 477
+P+MP G+ +P M P M + + + AS+ Q M P
Sbjct: 399 QIPMMPMMYQTMGNMMSFPRNTQMPGMPVQMMNQGYMSMANTQFNEKYNKLASLMQSMDP 458
Query: 478 IT-ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
I + A+ N E++R GE ++ L++ + +K+TGM+LE+ +++ ++ P
Sbjct: 459 IKREMIDAMTN---EERRNTFGERIFYLIKTIGDPRCSKITGMMLELPVDDLMKIISDPG 515
Query: 537 ALKAKVAEAMEVLRSVAQQQANN 559
L K+ EA +VL Q NN
Sbjct: 516 ELLKKIDEANDVL-----DQTNN 533
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 133/269 (49%), Gaps = 27/269 (10%)
Query: 55 KALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
+ L + F +G + + + D + QS+ +G+V F E A+ A++ N ++ K++ V
Sbjct: 3 RDLEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRV 62
Query: 114 GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSK 172
+R+Q R K N+FVKNL + T+++L F YG I S V D + GKS
Sbjct: 63 ---MRQQLRFKQTCNPK-GNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSL 118
Query: 173 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 232
+G+V+F + + K + +N ++ YV ++E+ MK+T +
Sbjct: 119 HYGYVHFSDPNVTQKVLADMNKDVVEEGAMYV--------------MEYEKRMKDTSSDW 164
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292
+ Y+ N ++ ++ L++LF ++GTI S + K GFV F+ + A +A+
Sbjct: 165 --VTCYVANFPTTLTEDGLRDLFGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSAVKAV 222
Query: 293 AEMNGKMIV---SKP--LYVAVAQRKEER 316
+ ++I ++P LYV Q +EER
Sbjct: 223 EGLKDQVITVEGAEPMVLYVNRLQSREER 251
>gi|387594015|gb|EIJ89039.1| hypothetical protein NEQG_00858 [Nematocida parisii ERTm3]
gi|387595783|gb|EIJ93406.1| hypothetical protein NEPG_01748 [Nematocida parisii ERTm1]
Length = 512
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 177/325 (54%), Gaps = 17/325 (5%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F SS A++ NF L+ IR+M +++ S+ + GNI IKNL K D++ L+DT
Sbjct: 68 FFDESSVPIAIETFNFYSLHGSQIRVMPFNKE-SVVGNREGNIVIKNLPKETDNQTLYDT 126
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL--- 117
F FG ILSCK+ + + G G++Q+++ + A+ AI +N +++N K++ +
Sbjct: 127 FIVFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKLCATQCIPND 186
Query: 118 -RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 176
R+++RE VA F N++VKN T+E+++ EYG +TS + R G+ + F F
Sbjct: 187 KREKKRENVA--KIFTNIYVKNFPAGITEEEIEAKLKEYGELTSFLAPRTDSGEMRGFAF 244
Query: 177 VNFENADDAAKAVEALNGKKF-----DDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 231
N++ + AA A+EAL+ K F YV +A+ K+ER +E+ F Q + +
Sbjct: 245 ANYQTHEMAAAAIEALHDKPFPGYPEGTENLYVQRAKLKNERVEEMLEYFSQVPEHERRR 304
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 291
N+YI NL +++E + + FS++G I + K+ D ++ G+V + E+A++A
Sbjct: 305 ----NIYITNLPGELNEEDVVKYFSKYGPIVTYKLGTDAKN-NRSYGYVFYQKAEDAAKA 359
Query: 292 LAEMNGKMIVSKPLYVAVAQRKEER 316
+ N + L VA + K+ R
Sbjct: 360 VELANKSEYCEQTLDVAFFKCKKLR 384
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
NI++KN I + + +G + S SG+ +GF F ++ E A AI+ L
Sbjct: 201 NIYVKNFPAGITEEEIEAKLKEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAAAAIEAL 260
Query: 102 N-----GMLINDKQVFVGHFLRKQER--------ETVAIKTKFNNVFVKNLDESTTDEDL 148
+ G + ++V K ER V + N+++ NL +ED+
Sbjct: 261 HDKPFPGYPEGTENLYVQRAKLKNERVEEMLEYFSQVPEHERRRNIYITNLPGELNEEDV 320
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208
K F +YG I + + D ++ +G+V ++ A+DAAKAVE N ++ ++ V +
Sbjct: 321 VKYFSKYGPIVTYKLGTDAKN-NRSYGYVFYQKAEDAAKAVELANKSEYCEQTLDVAFFK 379
Query: 209 KKSERE 214
K RE
Sbjct: 380 CKKLRE 385
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFENADDAAK 187
K N ++V ++ +TT+ +L +IF + G I + ++R K KC+ +V F +
Sbjct: 17 KQNTIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDESSVPI 76
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
A+E N + V K+S V +G N+ IKNL D
Sbjct: 77 AIETFNFYSLHGSQIRVMPFNKES----------------VVGNREG-NIVIKNLPKETD 119
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
++ L + F FG I SCKV+++ G G++ + P+ A A+ +N ++ K L
Sbjct: 120 NQTLYDTFIVFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKLCA 179
Query: 308 AVA---QRKEERRARLQAQFSQM 327
++E++R + F+ +
Sbjct: 180 TQCIPNDKREKKRENVAKIFTNI 202
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 496 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGN 555
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 556 ILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 614
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ DE T +E
Sbjct: 615 GAWARQSTSADVKDFDEDTDEE 636
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 25 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGF 83
RI+ + DP T ++++ +L + L++ FS G ILS +I D + +S G+
Sbjct: 431 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 485
Query: 84 GFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDEST 143
+V ++ A+ A++ LN +I + V + +R+ K+ NVF+KNL ++
Sbjct: 486 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 541
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
++ L IF +G I S V D G K +GFV+F+ + A +A++ +NG + R+ +
Sbjct: 542 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 600
Query: 204 VGKAQKKSEREQELKGQFEQAMKETVDKF 232
VG+ + ERE E Q+ V F
Sbjct: 601 VGRFKSHKEREAERGAWARQSTSADVKDF 629
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 443 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 502
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 503 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 546
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 547 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFK 605
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 606 SHKEREAERGAWARQ 620
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ +NF +N + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 312 AKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 371
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
ILSCK+A D G KG+GFV F+ +ESA+ AID LNGM +N +++FVG F +ERE
Sbjct: 372 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKERE 427
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 6/187 (3%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A+
Sbjct: 257 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 316
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ +N +IN + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 317 ETMNFDVINGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 372
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G K +GFV+F+ + A +A++ALNG + R+ +VG+ + ERE E
Sbjct: 373 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERG 431
Query: 219 GQFEQAM 225
Q+
Sbjct: 432 AWARQST 438
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 319 MNFDVINGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 362
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ +NG + + ++V +
Sbjct: 363 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 421
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 422 SHKEREAERGAWARQ 436
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 118/170 (69%), Gaps = 7/170 (4%)
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
+FE+ + A KAVEALNG + YV QK+ ER+ ELK +F++ E ++++QG+NL
Sbjct: 3 SFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNL 62
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
Y+KNL D+IDD +L++ F++FGTITS KVM G SKG GFV F +PEEA++A+ EMN
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 298 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP 347
K+I ++PLYVA+AQ+K++R+A+L +Q+ M + MP + GP
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQY-------MQRTSSRDMPEHRIGP 165
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 24/200 (12%)
Query: 88 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NV 134
FE+ E+A+ A++ LNG K ++V ++ ER+ +K KF N+
Sbjct: 4 FEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQA-ELKEKFQRIRMERINRYQGVNL 62
Query: 135 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
+VKNL ++ D L+K F ++GTITSA VM DG+SK FGFV F + ++AAKA+ +N
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 195 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-------GLNLYIKNLGDSID 247
K + R YV AQKK +R+ +L Q+ M+ T + G+NL+IKNL SID
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQY---MQRTSSRDMPEHRIGPGVNLFIKNLDKSID 179
Query: 248 DEKLKELFSEFGTITSCKVM 267
DEKL+E FS+FGTITS KV+
Sbjct: 180 DEKLREEFSQFGTITSAKVV 199
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 16/139 (11%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNL +ID L F+ FG I S K+ T G+SKGFGFV F + E A AI ++
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEM 120
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN----------------NVFVKNLDESTTD 145
N LI + ++V +KQ+R+ N+F+KNLD+S D
Sbjct: 121 NEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDD 180
Query: 146 EDLKKIFGEYGTITSAVVM 164
E L++ F ++GTITSA V+
Sbjct: 181 EKLREEFSQFGTITSAKVV 199
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 341 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 400
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 401 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 459
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 460 GAWARQSTSADVKDFEEDTDEE 481
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 348 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 403
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 404 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 462
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 463 ARQSTSADVKDFE 475
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 348 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 391
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 392 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 450
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 451 SHKEREAERGAWARQ 465
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 389 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 448
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 449 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 507
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 508 GAWARQSTSADVKDFEEDTDEE 529
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 395
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 396 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 452 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 511 ARQSTSADVKDFE 523
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 395
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 396 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 439
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 440 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 498
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 499 SHKEREAERGAWARQ 513
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 384 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 443
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 444 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 502
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 503 GAWARQSTSADVKDFEEDTDEE 524
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 391 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 447 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 506 ARQSTSADVKDFE 518
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 391 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 434
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 435 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 493
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 494 SHKEREAERGAWARQ 508
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ +NF +N + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 294 AKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 353
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
ILSCK+A D G KG+GFV F+ +ESA+ AID LNGM +N +++FVG F +ERE
Sbjct: 354 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKERE 409
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 100/186 (53%), Gaps = 6/186 (3%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A+
Sbjct: 239 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 298
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ +N +IN + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 299 ETMNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 354
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V D G K +GFV+F+ + A +A++ALNG + R+ +VG+ + ERE E
Sbjct: 355 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERG 413
Query: 219 GQFEQA 224
Q+
Sbjct: 414 AWARQS 419
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 301 MNFDVINGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 344
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ +NG + + ++V +
Sbjct: 345 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 403
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 404 SHKEREAERGAWARQ 418
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Query: 207 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
AQKKSER ELK + EQ E + K+QG+NLY+KNL +S+DDE LK+ F FG ITS KV
Sbjct: 1 AQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKV 60
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
M D +G SKG GFV F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 61 MTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 120
Query: 327 MRPVAMGPSVPPRMPMYPPGPSGLG-------QQFLYGQAPPAIIPPQAGFGYQQQLVP 378
S P MY P +G G QQ P I P G QQ P
Sbjct: 121 RLASMRMHSNVPGGGMYNPAQTGPGYYVANPMQQQRNFAGGPQIARPGGGRWGQQNQYP 179
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 118 RKQERETVAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 175
+K E+ V K+ N++VKNLDES DE LKK F +G ITSA VM D +G+SK FG
Sbjct: 13 KKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFG 72
Query: 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
FV FE ++A AV +N K + YV AQ+K +R +L Q+ Q +
Sbjct: 73 FVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 122
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 30 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 89
H+ ++K N+++KNLD+S+D +AL F +FGNI S K+ TD +G+SKGFGFV FE
Sbjct: 18 HKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFE 77
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
E A A+ ++N ++ K ++V RK++R
Sbjct: 78 KPEEATTAVTEMNSKMVCSKPLYVALAQRKEDR 110
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 112 FVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
FVG+F ++ERE + KF NV++KN E TDE LK++F +G S VM+D G
Sbjct: 1 FVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERG 60
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 229
+S+ FGFVNF + DA KAV+ +NG + + + YVG+AQK+ ER+ ELK +FE ++ +
Sbjct: 61 RSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRI 120
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
++QG+NLY+KNL D IDDE+L++ F+ +GTITS KV
Sbjct: 121 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKV 157
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 14/135 (10%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + + L + FS+FG LS ++ D G+S+GFGFV F + AQ A+D++
Sbjct: 24 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEM 83
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 148
NG +N K ++VG ++ ER+ +K KF N++VKNLD+ DE L
Sbjct: 84 NGTELNGKVIYVGRAQKRLERQG-ELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDERL 142
Query: 149 KKIFGEYGTITSAVV 163
+K F YGTITSA V
Sbjct: 143 RKEFAPYGTITSAKV 157
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 77/126 (61%), Gaps = 10/126 (7%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
+VG + + ERE+EL +A+K T N+YIKN G+ DEKLKE+FS FG
Sbjct: 1 FVGNFKSRKEREEELG---SKALKFT-------NVYIKNFGEDYTDEKLKEVFSAFGRTL 50
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S +VM+D G S+G GFV F+ +A +A+ EMNG + K +YV AQ++ ER+ L+
Sbjct: 51 SVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKR 110
Query: 323 QFSQMR 328
+F ++
Sbjct: 111 KFELIK 116
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 345 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 404
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 405 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 463
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 464 GAWARQSTSADVKDFEEDTDEE 485
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 292 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 351
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 352 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 407
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 408 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 466
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 467 ARQSTSADVKDFE 479
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 292 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 351
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 352 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 395
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 396 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 454
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 455 SHKEREAERGAWARQ 469
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 165/311 (53%), Gaps = 12/311 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A R L +N LN +++RI+ H + N+ +KNLDK + + L D+F FG+
Sbjct: 139 ADRCLQDMNNYVLNGQALRIV--HSVSKFDYNPKANLLVKNLDKEVTQQELFDSFKQFGD 196
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I S K+ T G S+G+ F+QF+++E A+ A++ +N I K++ + +K RE
Sbjct: 197 IQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNAMNQAEIKGKKIEINRHEKKATRENPQ 256
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+TKFNN+FVKNL + T D+ LK +FG++G I S V RD G K +G+V F+ D A
Sbjct: 257 -QTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIESVTVQRDEQGNLKDYGYVCFKEPDHAE 315
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV +N K+ DD+ V + K + E +G + + ++K N+YIK + + +
Sbjct: 316 AAVLEMNKKQIDDQFLIVNQHISKKDNE-PTQGSRLNPITQNLNKTFNSNIYIKFIPNEV 374
Query: 247 DDEKLKELFS-EFGTITSCKVMRDPSGISKGS------GFVAFSTPEEASRALAEMNGKM 299
+E+L++ FS + I S K+ + I ++ + T A +A+ +
Sbjct: 375 TEEELRKTFSMKDANIVSIKLTKFVKKIEDQEVQPYQFAYILYDTVLGAQKAIQTFDQST 434
Query: 300 IV-SKPLYVAV 309
+ +KPL V +
Sbjct: 435 VFGNKPLLVEL 445
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 19/226 (8%)
Query: 82 GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDE 141
G+G++QF +KE A + +N ++N + + + H + K + A N+ VKNLD+
Sbjct: 127 GYGYLQFNSKEEADRCLQDMNNYVLNGQALRIVHSVSKFDYNPKA------NLLVKNLDK 180
Query: 142 STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
T ++L F ++G I S + DG S+ + F+ F++ ++A KA+ A+N + ++
Sbjct: 181 EVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNAMNQAEIKGKK 240
Query: 202 WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 261
+ + +KK+ RE + +F NL++KNL DD++LK LF +FG I
Sbjct: 241 IEINRHEKKATRENPQQTKFN-------------NLFVKNLPKGTDDDQLKGLFGKFGEI 287
Query: 262 TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
S V RD G K G+V F P+ A A+ EMN K I + L V
Sbjct: 288 ESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQIDDQFLIV 333
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 90/107 (84%), Gaps = 1/107 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++V
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
MN +I KP+ + +QR R
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLR 94
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 92/118 (77%), Gaps = 1/118 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 405 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGN 464
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE+
Sbjct: 465 ILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKERES 521
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 25 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGF 83
RI+ + DP T ++++ +L + L++ FS G ILS +I D + +S G+
Sbjct: 340 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 394
Query: 84 GFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDEST 143
+V ++ A+ A++ LN +I + V + +R+ K+ NVF+KNL ++
Sbjct: 395 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 450
Query: 144 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
++ L IF +G I S V D G K +GFV+F+ + A +A++ +NG + R+ +
Sbjct: 451 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 509
Query: 204 VGKAQKKSERE 214
VG+ + ERE
Sbjct: 510 VGRFKSHKERE 520
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 18/193 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 352 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 411
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 412 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 455
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 456 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFK 514
Query: 312 RKEERRARLQAQF 324
+ER + Q
Sbjct: 515 SHKERESWSDPQL 527
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVK 137
TK + N++VK
Sbjct: 214 TKAHYTNLYVK 224
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 19/207 (9%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 95
++ + ++++ +L+ S+ L+D FS G++ S ++ D + S G+ +V F + E+ +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 96 NAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
AI++LN I G R +R+ K N+F+KNL ++ L F
Sbjct: 94 KAIEQLNYTPIK------GRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFS 147
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
+G I S+ + D +GKSK FGFV+FE A +A++ALNG + +E YV + ER
Sbjct: 148 VFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER 207
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIK 240
+ +L +ET K NLY+K
Sbjct: 208 DSQL--------EET--KAHYTNLYVK 224
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 181
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 220 QFEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 177 WARQSTSADVKDFE 190
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 149 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 208
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 209 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 267
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 268 GAWARQSTSADVKDFEEDTDEE 289
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 96 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 155
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 156 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 211
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 212 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 270
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 271 ARQSTSADVKDFE 283
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 96 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 155
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 156 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 199
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 200 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 258
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 259 SHKEREAERGAWARQ 273
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 220 QFEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 177 WARQSTSADVKDFE 190
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 220 QFEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 177 WARQSTSADVKDFE 190
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ F G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 220 QFEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 177 WARQSTSADVKDFE 190
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 220 QFEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 177 WARQSTSADVKDFE 190
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 105 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 164
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 165 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 223
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 224 GAWARQSTSADVKDFEEDTDEE 245
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 112 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 167
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 168 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 226
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 227 ARQSTSADVKDFE 239
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 112 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 155
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 156 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 214
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 215 SHKEREAERGAWARQ 229
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 59 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 118
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 119 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 177
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 178 GAWARQSTSADVKDFEEDTDEE 199
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 5 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 64
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 65 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 120
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 121 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 179
Query: 220 QFEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 180 WARQSTSADVKDFE 193
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 6 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 65
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 66 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 109
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 110 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 168
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 169 SHKEREAERGAWARQ 183
>gi|388492458|gb|AFK34295.1| unknown [Medicago truncatula]
Length = 107
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/99 (77%), Positives = 89/99 (89%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P+ AL+TALANA PEQQRT+LGE LYPLVE++E AAKVTGMLLEMDQ EVLHL+ESPE
Sbjct: 9 PMQALATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPE 68
Query: 537 ALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 575
ALK KVAEA++VLR+VAQQQ+N+P DQLASLSLN+NL S
Sbjct: 69 ALKTKVAEAVDVLRNVAQQQSNSPTDQLASLSLNDNLES 107
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 41/233 (17%)
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
F NV++K++ S T+E +++ FG +G ITS + D G+ F FVNF + A AVE
Sbjct: 4 FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVE 61
Query: 191 ALNGKKFDDRE---------------------------------------WYVGKAQKKS 211
++G+ + E YV +AQ K+
Sbjct: 62 DMDGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKA 121
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 271
ER LK QF +F G+NLY+KNLG+++DD +LK +F FGTITS KVM D
Sbjct: 122 ERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDK 181
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
G+S+G GFV FST EEA++A+ +M+ K+I KPLYV + +++E+R RLQ ++
Sbjct: 182 GVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 55/232 (23%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IK++ S + + + F +FG I S + TD G+ F FV F E A+ A++ +
Sbjct: 6 NVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVEDM 63
Query: 102 NGMLINDKQ---------------------------------------VFVGHFLRKQER 122
+G + +++ ++V K ER
Sbjct: 64 DGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKAER 123
Query: 123 ETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 169
V +K +F N++VKNL E+ D +LK++F +GTITS VM D G
Sbjct: 124 AAV-LKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKG 182
Query: 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
S+ FGFV F ++A KAV ++ K + YVG +K+ +R + L+ ++
Sbjct: 183 VSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 98
G N+++KNL +++D L F FG I S K+ TD G S+GFGFV F E A A+
Sbjct: 143 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 202
Query: 99 DKLNGMLINDKQVFVGHFLRKQER 122
++ LI K ++VG ++++R
Sbjct: 203 TDMHLKLIGGKPLYVGMHEKREQR 226
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 175 GAWARQSTSADVKDFEEDTDEE 196
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 220 QFEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 177 WARQSTSADVKDFE 190
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ +NF +N + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 85 AKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 144
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
ILSCK+A D G KG+GFV F+ +ESA+ AID LNGM +N +++FVG F +ERE
Sbjct: 145 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKERE 200
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 6/178 (3%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
T ++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A+
Sbjct: 30 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRAL 89
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ +N +IN + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 90 ETMNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 145
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
S V D G K +GFV+F+ + A +A++ALNG + R+ +VG+ + ERE E
Sbjct: 146 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE 202
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 92 MNFDVINGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 135
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ +NG + + ++V +
Sbjct: 136 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 194
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 195 SHKEREAERGAWARQ 209
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 99 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 158
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 159 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 217
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ +E T +E
Sbjct: 218 GAWARQSTSADVKDFEEDTDEE 239
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS I D + +S G+ +V ++ A+ A++
Sbjct: 46 SLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALET 105
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 106 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 161
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 162 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 220
Query: 221 FEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 221 ARQSTSADVKDFE 233
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 46 SLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALET 105
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 106 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 149
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 150 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 208
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 209 SHKEREAERGAWARQ 223
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + VK+ ++ T +E
Sbjct: 175 GAWARQSTSADVKDFEDDTDEE 196
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 220 QFEQAMKETVDKFQ 233
Q+ V F+
Sbjct: 177 WARQSTSADVKDFE 190
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 101/142 (71%), Gaps = 3/142 (2%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 126 -AIKTKFNNVFVKNLDESTTDE 146
A + + K+ +E T +E
Sbjct: 175 GAWARQSTSADCKDFEEDTDEE 196
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 6/194 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 220 QFEQAMKETVDKFQ 233
Q+ F+
Sbjct: 177 WARQSTSADCKDFE 190
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRA 318
+ER A
Sbjct: 166 SHKEREA 172
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
ILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILS 118
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|62321453|dbj|BAD94856.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 126
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 105/148 (70%), Gaps = 22/148 (14%)
Query: 423 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
M QM PRG +RYP GR G+G + P DMG +P + I AL+
Sbjct: 1 MQQQMHPRGRMFRYPQGRG--------GSGDV--PPYDMGNNMP---------LTIGALA 41
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKV
Sbjct: 42 SNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKV 101
Query: 543 AEAMEVLRSVAQQQANNPADQLASLSLN 570
AEAM+VLRSVA A +QLASL+L+
Sbjct: 102 AEAMDVLRSVA---AGGATEQLASLNLS 126
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 106/154 (68%), Gaps = 3/154 (1%)
Query: 199 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF 258
++++ V +AQKKSER+ ELK ++EQ E + ++QG+NLY+KNL D+I+DE L+ F +
Sbjct: 13 EQKFTVCRAQKKSERQAELKRRYEQYKAERIQRYQGVNLYVKNLHDTINDETLRSNFESY 72
Query: 259 GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318
G ITS KVM D G SKG GFV F +EA++A+ EMN K+I +KPLYVA+AQRKE+R+A
Sbjct: 73 GNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEMNNKIIENKPLYVALAQRKEDRKA 132
Query: 319 RLQAQFSQMRPVAMGPSVPPRM--PMYPPGPSGL 350
+L +Q+ Q R AM P + MY P G
Sbjct: 133 QLASQYMQ-RLAAMRMQNPAGLMGTMYAPASGGF 165
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNL ++ DE L+ F YG ITSA VM D G+SK FGFV FE AD+A KAV +
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEM 109
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
N K +++ YV AQ+K +R+ +L Q+ Q +
Sbjct: 110 NNKIIENKPLYVALAQRKEDRKAQLASQYMQRL 142
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNL +I+ + L F S+GNI S K+ D G+SKGFGFV FE + A A+ ++
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEM 109
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
N +I +K ++V RK++R+
Sbjct: 110 NNKIIENKPLYVALAQRKEDRK 131
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 91/118 (77%), Gaps = 1/118 (0%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL KSID+KAL++ FS+FGN
Sbjct: 56 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGN 115
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
ILSCK+A D G KG+GFV F+ +ESA+ AI+ +NGM +N +++FVG F +ERE
Sbjct: 116 ILSCKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL +S ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILS 118
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V D G K +GFV+F+ + A +A+ A+NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 221 FEQAMKETVDKFQ 233
Q+ V FQ
Sbjct: 178 ARQSTSGDVKGFQ 190
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG SID++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKSIDNKAL 106
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFK 165
Query: 312 RKEERRARLQAQFSQ 326
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 167/330 (50%), Gaps = 29/330 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
++A A+ N+T LN K I + S D + S + NIF+ N+ + K L + F +F
Sbjct: 70 NAAQEAVQKYNYTMLNGKEILLTIS--DTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNF 127
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G +LSCKI+ G+SKG+G+V ++N +SA+ A+ + IN+ +FV F Q+
Sbjct: 128 GPVLSCKISRTSEGKSKGYGYVMYKNLKSAKKAVTNCQNVKINENILFVD-FYNPQKSAR 186
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ F N F KN + T+ +LK + +YG IT+ DGK F VN+ + +
Sbjct: 187 NSENKAFTNCFCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKPVGFACVNYAHPES 246
Query: 185 AAKAVEALNGK------------KFDDREWYVGKAQKKSEREQELKG------QFEQAMK 226
A +A++ L+ K KF +Y+ K +KK EREQ LK F +K
Sbjct: 247 AVRAIDELHNKQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILKSFYGNSVGFRNKLK 306
Query: 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
NL+I+N+ S +++L E+ +FG IT K+ D K G+V +ST E
Sbjct: 307 R--------NLFIQNVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIE 358
Query: 287 EASRALAEMNGKMIVSKPLYVAVAQRKEER 316
EA+ AL + ++ L +++ + K ER
Sbjct: 359 EAAVALEKSKQVLLDGNQLELSIYKSKYER 388
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 120/259 (46%), Gaps = 43/259 (16%)
Query: 82 GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-----NVFV 136
F FV+F++ +AQ A+ K N ++N K++ + T++ T+F N+FV
Sbjct: 60 AFAFVKFDSANAAQEAVQKYNYTMLNGKEILL----------TIS-DTQFKYSQSANIFV 108
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
N+ + +DL++IF +G + S + R +GKSK +G+V ++N A KAV K
Sbjct: 109 NNIPTDMSAKDLEEIFKNFGPVLSCKISRTSEGKSKGYGYVMYKNLKSAKKAVTNCQNVK 168
Query: 197 FDDREWYVGKAQ-KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
++ +V +KS R E K N + KN + + +LK L
Sbjct: 169 INENILFVDFYNPQKSARNSENKA--------------FTNCFCKNFPPNYTEAELKNLL 214
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS------------K 303
++G IT+ G G V ++ PE A RA+ E++ K I + +
Sbjct: 215 KKYGEITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELHNKQIFNNNQMQKDTKFAIE 274
Query: 304 PLYVAVAQRKEERRARLQA 322
P Y+ ++K+ER L++
Sbjct: 275 PFYIQKNEKKKEREQILKS 293
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 20/177 (11%)
Query: 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190
N + V ++ +TT +LK++F G + ++M+ F FV F++A+ A +AV+
Sbjct: 20 LNVIHVGDISLNTTANELKEVFK--GLNVTNIIMKKTLNGQYAFAFVKFDSANAAQEAVQ 77
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
N + +E + + QF+ + Q N+++ N+ + +
Sbjct: 78 KYNYTMLNGKEILLTISD----------TQFKYS--------QSANIFVNNIPTDMSAKD 119
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
L+E+F FG + SCK+ R G SKG G+V + + A +A+ I L+V
Sbjct: 120 LEEIFKNFGPVLSCKISRTSEGKSKGYGYVMYKNLKSAKKAVTNCQNVKINENILFV 176
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+FI+N+ S L + FGNI K+ D K FG+V + E A A++K
Sbjct: 308 NLFIQNVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIEEAAVALEKS 367
Query: 102 NGMLINDKQVFVGHFLRKQERET 124
+L++ Q+ + + K ER T
Sbjct: 368 KQVLLDGNQLELSIYKSKYERST 390
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 151/281 (53%), Gaps = 27/281 (9%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 96
K G + +KNLD +D + L D F FG + CK+A+ S G G V +E+ + A
Sbjct: 75 KVGAIKLVVKNLDPRMDDQQLRDIFGEFGTMTLCKVAS-----SIGVGLVTYESFDDAHA 129
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+ ++NGM +N +QV V R ER + + V+NL ++E L + +G
Sbjct: 130 AMTQVNGMYLNGQQVQVH---RLPERPS---------LIVRNLPADASEESLAALCRPFG 177
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
+ A ++++ + G V + +DA A+ AL+G K + V ++ERE
Sbjct: 178 RVGVATIVQEAPEDAP-MGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERE-- 234
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
E A+ + +++ QG L IKN+ +DD++L+ELF+ FGTI S +MRD +G SKG
Sbjct: 235 ----CESAVAQRLERLQG-KLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKG 289
Query: 277 SGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEE 315
GFVA+ST E AS+A+A +G+ +++PL V + E
Sbjct: 290 YGFVAYSTTEAASKAMAATHGQTFDRLTRPLDVTIFTSSEH 330
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 27/306 (8%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A A+ +N LN + +++ HR P R S + ++NL ++L FG
Sbjct: 127 AHAAMTQVNGMYLNGQQVQV---HRLPE-RPS----LIVRNLPADASEESLAALCRPFGR 178
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 125
+ I + + G V + E A AI L+G + Q+ V + ERE
Sbjct: 179 VGVATIVQEAP-EDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERECES 237
Query: 126 AIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
A+ + + +KN+D D+ L+++F +GTI S +MRD GKSK +GFV +
Sbjct: 238 AVAQRLERLQGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYST 297
Query: 182 ADDAAKAVEALNGKKFD------DREWYVGKAQK---KSEREQELKGQFEQAMKETVDKF 232
+ A+KA+ A +G+ FD D + K+ R E++ E A + +F
Sbjct: 298 TEAASKAMAATHGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVAR---IAQF 354
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292
+ NL I+NLG+SID+++L+ LF+ FG I +C V+RD G S+ GFV F+T EEAS+A+
Sbjct: 355 RK-NLCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAV 413
Query: 293 AEMNGK 298
AEM+GK
Sbjct: 414 AEMHGK 419
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 152/320 (47%), Gaps = 51/320 (15%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+ I+NL +SID K L F+ FG I +C + D G+S+ GFV F E A A+ ++
Sbjct: 357 NLCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEM 416
Query: 102 NGMLINDKQVFVGHFLRKQERET-------VAIKTKFNN---------------VFVKNL 139
+G Q+ + L + R+ + K + ++VKN+
Sbjct: 417 HGKPSPGTQMPMTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKLIYVKNI 476
Query: 140 DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199
D + EDL+++FG++G I S+ +MRD G SK G V++ +AD A AV A++GK+
Sbjct: 477 DPAVELEDLQRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKRL-- 534
Query: 200 REWYVGKAQKKSEREQELKGQ-FEQAMKETVDKFQGL---NLYIKNLGDSIDDEKLKELF 255
GQ ++ + D+F + +L IKNL SI+ L++LF
Sbjct: 535 ----------------TATGQPLRVSLPDPRDRFSPIRYASLIIKNLEQSINLSALRDLF 578
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
S FG I S + + + V F + E A+A +NG ++ P+ + RK+
Sbjct: 579 SPFGCILSSRTIE----TQPRAALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDR 634
Query: 316 RR---ARLQAQFSQMRPVAM 332
R A L A ++ ++ +A+
Sbjct: 635 RSVYVANLPANYNYVKLMAL 654
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 27/259 (10%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
++ IKNL++SI+ AL D FS FG ILS + Q + V F ++E+ QNAI
Sbjct: 558 ASLIIKNLEQSINLSALRDLFSPFGCILSSRTI---ETQPRA-ALVDFLSEEACQNAIAN 613
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+NG ++N V ++RK R +V+V NL + L +F + G I +
Sbjct: 614 INGAIVNGLPVTASPYVRKDRR----------SVYVANLPANYNYVKLMALFADCGKIVT 663
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+V RD GFV F+ A E +G + E YV + +++
Sbjct: 664 TIVPRD----FSTVGFVCFDQPASVELA-ERFHGHVLEGEELYVSRFPLQTDPAPPPHAT 718
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
E A LY+ N+ ++K++EL + +GT+T+ V R G S+G FV
Sbjct: 719 SEVAPYHI--------LYLTNVDFEASEDKVRELCAPYGTLTAVHVRRRADGTSRGFAFV 770
Query: 281 AFSTPEEASRALAEMNGKM 299
F+ E+AS+A ++G++
Sbjct: 771 HFTNVEDASKAKDALSGQI 789
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 91/167 (54%), Gaps = 10/167 (5%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P +RK ++++ NL + ++ L F+ G I++ + D S GFV F+
Sbjct: 628 PYVRKDRR-SVYVANLPANYNYVKLMALFADCGKIVTTIVPRDFST----VGFVCFDQPA 682
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQER----ETVAIKTKFNNVFVKNLDESTTDEDL 148
S + A ++ +G ++ ++++V F + + + ++ +++ N+D +++ +
Sbjct: 683 SVELA-ERFHGHVLEGEELYVSRFPLQTDPAPPPHATSEVAPYHILYLTNVDFEASEDKV 741
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
+++ YGT+T+ V R DG S+ F FV+F N +DA+KA +AL+G+
Sbjct: 742 RELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQ 788
>gi|162605986|ref|XP_001713508.1| polyadenylate-binding protein [Guillardia theta]
gi|13794428|gb|AAK39803.1|AF165818_11 polyadenylate-binding protein [Guillardia theta]
Length = 389
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 127/210 (60%), Gaps = 4/210 (1%)
Query: 5 SSAARALDVLNF---TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 61
SSA +AL+ +NF T L IRIM+ + + SIRKSG GN+FIKNL + K LH F
Sbjct: 56 SSAKKALNDMNFYSDTELFKTPIRIMWKNNNNSIRKSGYGNLFIKNLPYNFSPKDLHSLF 115
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121
S +G ILS KI D G S G+GFV ++ + A +AI+ LNG LI++K + V HFL K +
Sbjct: 116 SEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLNKSQ 175
Query: 122 RETVAIKTKFNNVFVKNL-DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
RE ++ F N++VKNL + +++ + +FG +G ITS + + K F ++NFE
Sbjct: 176 RERISSCDLFTNIYVKNLPVDKLSEKVIFNLFGVFGKITSIFIPLWYNSIPKGFAYINFE 235
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKK 210
N +DA +A+ +N +K + V KA K
Sbjct: 236 NHEDAEEAIITMNNRKIAGKSLIVCKAINK 265
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 18/240 (7%)
Query: 77 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG--HFLRKQERETVAIKTKFNNV 134
SG S G+ +V F + SA+ A++ +N +D ++F + K ++ K+ + N+
Sbjct: 41 SGNSLGYSYVYFNSYSSAKKALNDMN--FYSDTELFKTPIRIMWKNNNNSIR-KSGYGNL 97
Query: 135 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
F+KNL + + +DL +F EYG I S+ + D +G S +GFV+++ DA A+ LNG
Sbjct: 98 FIKNLPYNFSPKDLHSLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNG 157
Query: 195 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL-GDSIDDEKLKE 253
K ++ V KS+RE+ + D F N+Y+KNL D + ++ +
Sbjct: 158 KLISNKMITVKHFLNKSQRERI----------SSCDLFT--NIYVKNLPVDKLSEKVIFN 205
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
LF FG ITS + + I KG ++ F E+A A+ MN + I K L V A K
Sbjct: 206 LFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIVCKAINK 265
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
++V +L+ S D DL++IF + I+ + +D G S + +V F + A KA+ +
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N + D E + K+ K ++ K NL+IKNL + + L
Sbjct: 66 NF--YSDTELF------KTPIRIMWKNN-----NNSIRKSGYGNLFIKNLPYNFSPKDLH 112
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
LFSE+G I S K+ D G S G GFV + ++A A+ +NGK+I +K + V
Sbjct: 113 SLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLN 172
Query: 313 KEER 316
K +R
Sbjct: 173 KSQR 176
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMY----SHRDPSIRKSGTGNIFIKNL--DKSIDHKAL 57
+ A A++ LN ++NK I + + S R+ NI++KNL DK + K +
Sbjct: 145 MKDAISAINNLNGKLISNKMITVKHFLNKSQRERISSCDLFTNIYVKNLPVDK-LSEKVI 203
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F FG I S I + KGF ++ FEN E A+ AI +N I K + V +
Sbjct: 204 FNLFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIVCKAI 263
Query: 118 RKQERETVAIKTK 130
K + +T+ K++
Sbjct: 264 NKIKIDTINKKSR 276
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
GNILSCK+ + G+SKGFGFV F + E A A+ ++NG ++ K ++V RK+ER+
Sbjct: 123 GNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 180
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 118/197 (59%), Gaps = 22/197 (11%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 113
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
L + FS FG I SCKVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+
Sbjct: 114 ALYDTFSAFGNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 172
Query: 310 AQRKEERRARLQAQFSQ 326
AQRKEER+A L Q+ Q
Sbjct: 173 AQRKEERKAHLTNQYMQ 189
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 6/183 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
VM + DG+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q
Sbjct: 128 CKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ 186
Query: 221 FEQ 223
+ Q
Sbjct: 187 YMQ 189
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 14/209 (6%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
KTK ++VKN + ++D FG+ G T ++ + G+ FG + F DA +
Sbjct: 40 KTKTCPIYVKNFVKEIDEDDF---FGKCGASTK--IINNDCGQQTEFGLLPFNKQKDAIR 94
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247
AV+ + G + Y+ +A+ K +R+ E + E K ++ +NLY+KNL ID
Sbjct: 95 AVDKMKG-----MDIYLAQAKIKEKRQTEFSKKPEPLHK---PRYNSVNLYVKNLSYEID 146
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
D +LK+ F+ FGTITS KVMR+ G SKG GFV FSTP EA +AL+EMNGK++ SKPLYV
Sbjct: 147 DYRLKKEFAPFGTITSAKVMRE-GGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYV 205
Query: 308 AVAQRKEERRARLQAQFSQMRPVAMGPSV 336
A AQRK+ER+ L Q++Q A P+
Sbjct: 206 AWAQRKQERQVSLAQQYTQRMEKAWIPNT 234
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 109/207 (52%), Gaps = 20/207 (9%)
Query: 30 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 89
H + + K+ T I++KN K ID D F G S KI + GQ FG + F
Sbjct: 33 HVNDTESKTKTCPIYVKNFVKEIDED---DFFGKCG--ASTKIINNDCGQQTEFGLLPFN 87
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-------KFN--NVFVKNLD 140
++ A A+DK+ GM +++ K++R+T K ++N N++VKNL
Sbjct: 88 KQKDAIRAVDKMKGM-----DIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKNLS 142
Query: 141 ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
D LKK F +GTITSA VMR+G G+SK FGFV F +A KA+ +NGK +
Sbjct: 143 YEIDDYRLKKEFAPFGTITSAKVMREG-GRSKGFGFVCFSTPAEARKALSEMNGKILASK 201
Query: 201 EWYVGKAQKKSEREQELKGQFEQAMKE 227
YV AQ+K ER+ L Q+ Q M++
Sbjct: 202 PLYVAWAQRKQERQVSLAQQYTQRMEK 228
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 49/66 (74%)
Query: 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 544
L +ASP +Q+ +LG L+PLV+ +++ A K+TG+LLE D +E++++LESPE L+ +
Sbjct: 364 LVSASPHEQKQMLGVRLFPLVQIIDKKLAEKITGILLEFDTSEIIYMLESPELLRTMANK 423
Query: 545 AMEVLR 550
A+ +L+
Sbjct: 424 AVTLLQ 429
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
R+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G
Sbjct: 1 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GG 59
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 60 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 113
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 82
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 83 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 115
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 82
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG ++ K ++V RK+ER+
Sbjct: 83 NGRIVATKPLYVALAQRKEERQ 104
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 62 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 121
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
GNILSCK+ D +G S+G+GFV FE E+A AI+ +NGML+ND++V
Sbjct: 122 GNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 167
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 18/169 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 71 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDDSIDNKAL 114
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
+ FS FG I SCKV+ D +G S+G GFV F T E A+RA+ MNG ++
Sbjct: 115 YDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLL 162
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G I+S ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I + + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 71 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILS 126
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
V+ D +G S+ +GFV+FE + A +A+E +NG +DR+
Sbjct: 127 CKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRK 166
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 71 MNFEVIKGRPIRIMWSQR 88
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 171/344 (49%), Gaps = 14/344 (4%)
Query: 7 AARALDVLNFTPLNN-KSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
A + LD ++ T N+ K I + ++ P+ + +G +F+KNL + +D+K + DTF+S G
Sbjct: 68 AIKVLDGMDLTGGNDDKGISLSFTPSQPASSAASSGTLFVKNLAEDVDNKTIFDTFASIG 127
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
S K+ T G+S+GF V +++ + AQ A+D+L G+++N K + R Q +
Sbjct: 128 APSSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNI---RLERYQTGAQL 184
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
+++ V++ L TD+ L + +G++ S V + D FV E+
Sbjct: 185 KEESRKRTVYLAGLPHEVTDKQLIDLLSPFGSVIS-VKLYPKDKDRNPVAFVTMEDEQAV 243
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+AVE LNG F+ + V + Q ++ Q + ++ET D LY++N+ +
Sbjct: 244 LRAVEKLNGGSFERQRITVAQLQARNPATQSSGPTSARQVEETKDA----TLYVRNIYED 299
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
+ D L E F FG ++ + R +G ++G FV F PE+ + ALA N + +
Sbjct: 300 VQDSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFENPEDRAHALAAGNMLEVGGGKV 359
Query: 306 YVAVAQRKEERRARLQAQFS-QMRPVAMGPSVPPRMPMYPPGPS 348
+ + KEE LQ S MRP A P+ P+ P GP+
Sbjct: 360 QYSAYRTKEE----LQNMSSFGMRPNAGAPAANPQCPPRQVGPT 399
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 27/280 (9%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++ I +L ++ L + F + G+ S I D S + G G+V FE+ +SA AI
Sbjct: 10 SASLRIDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAI 69
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
L+GM + G L + + +FVKNL E ++ + F G
Sbjct: 70 KVLDGMDLTGGNDDKGISLSFTPSQPASSAASSGTLFVKNLAEDVDNKTIFDTFASIGAP 129
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
+SA VM +GKS+ F V++++ A +A++ L G V + ER Q
Sbjct: 130 SSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEG-------VVVNGKNIRLERYQTGA 182
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM-----RDPSGI 273
E++ K TV Y+ L + D++L +L S FG++ S K+ R+P
Sbjct: 183 QLKEESRKRTV--------YLAGLPHEVTDKQLIDLLSPFGSVISVKLYPKDKDRNP--- 231
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
FV + RA+ ++NG + + VA Q +
Sbjct: 232 ---VAFVTMEDEQAVLRAVEKLNGGSFERQRITVAQLQAR 268
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
Query: 136 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNG 194
+ +L E+ T+ L ++FG G S ++RD K G+VNFE+ D A +A++ L+G
Sbjct: 15 IDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAIKVLDG 74
Query: 195 KKF----DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
DD+ + + G L++KNL + +D++
Sbjct: 75 MDLTGGNDDKGISLSFTPSQPASSAASSG----------------TLFVKNLAEDVDNKT 118
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL----Y 306
+ + F+ G +S KVM G S+G V + P+ A RAL E+ G ++ K + Y
Sbjct: 119 IFDTFASIGAPSSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNIRLERY 178
Query: 307 VAVAQRKEERRAR 319
AQ KEE R R
Sbjct: 179 QTGAQLKEESRKR 191
>gi|298712686|emb|CBJ48711.1| polyadenylate-binding protein, putative [Ectocarpus siliculosus]
Length = 80
Score = 142 bits (359), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/80 (85%), Positives = 73/80 (91%)
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
MRD DGKSKCFGFVNFENADDAAKAVEALNGKK DD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
Query: 224 AMKETVDKFQGLNLYIKNLG 243
+MKET DK+QG NLY+KN G
Sbjct: 61 SMKETADKYQGANLYVKNFG 80
Score = 52.0 bits (123), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75 DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 134
D G+SK FGFV FEN + A A++ LNG ++DK+ +VG +K ERE +K +F
Sbjct: 3 DMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSEREN-ELKLRFEQS 61
Query: 135 FVKNLDE 141
+ D+
Sbjct: 62 MKETADK 68
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
MRD G SK GFV F ++A++A+ +NGK + K YV AQ+K ER L+ +F Q
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
>gi|378756066|gb|EHY66091.1| hypothetical protein NERG_00787 [Nematocida sp. 1 ERTm2]
Length = 513
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 177/326 (54%), Gaps = 18/326 (5%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F +S A++ NF LN IR+M ++ S+ + GNI IKNL K D++ L+DT
Sbjct: 68 FFDEASVPTAIETFNFYELNGSQIRVMPLDKE-SVVNNREGNIVIKNLPKETDNQTLYDT 126
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL--- 117
F FG I+SCK+ + + G G++Q+++ + A+ AI +N +++N K++ +
Sbjct: 127 FIIFGPIVSCKVVKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLCAVQCVPND 186
Query: 118 -RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 176
R+++RE V + F N+++KN + +E++KK EYG +TS V R G+ + F F
Sbjct: 187 KREKKRENV--EKIFTNIYMKNFPKGVEEEEIKKKLEEYGELTSFFVPRAETGEMRGFAF 244
Query: 177 VNFENADDAAKAVEALNGKKF------DDREWYVGKAQKKSEREQELKGQFEQAMKETVD 230
N++ + A A+ L+ K F + YV +A+ KSER +E G F ++ V
Sbjct: 245 ANYKTHEMAEAAILGLHDKPFFGGNSGEGENLYVQRAKLKSERVEETAGYFANPPEQEVR 304
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 290
+ N+YI NL +++E + + FS++G I + K+ D ++ G+V + E+A++
Sbjct: 305 R----NIYITNLPGDLNEEDVVKYFSKYGPINTYKLGTDTKN-NRSYGYVFYQKAEDAAK 359
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEER 316
A+ N +PL VA + K+ R
Sbjct: 360 AVELANKSEYCGQPLGVAFFKCKKLR 385
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAV 189
N+++V ++ STT+ DL +IF + G I + ++ R K KC+ +V F + A+
Sbjct: 19 NSIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYAYVTFFDEASVPTAI 78
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM---KETVDKFQGLNLYIKNLGDSI 246
E N +Y EL G + M KE+V + N+ IKNL
Sbjct: 79 ETFN--------FY------------ELNGSQIRVMPLDKESVVNNREGNIVIKNLPKET 118
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D++ L + F FG I SCKV+++ G G++ + P+ A A+ +N M+ K L
Sbjct: 119 DNQTLYDTFIIFGPIVSCKVVKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLC 178
Query: 307 VAVA---QRKEERRARLQAQFSQM 327
++E++R ++ F+ +
Sbjct: 179 AVQCVPNDKREKKRENVEKIFTNI 202
>gi|302142289|emb|CBI19492.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 82/89 (92%)
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 534
PMPI+ L++ALANA+P+QQRT+L ESLYPLV+QLE + AAK+TGMLLEM QTE LHLLES
Sbjct: 53 PMPISTLASALANATPDQQRTMLSESLYPLVDQLEHEMAAKLTGMLLEMGQTEFLHLLES 112
Query: 535 PEALKAKVAEAMEVLRSVAQQQANNPADQ 563
PEALK+KVAEAM+VLR+VAQQQAN+P +Q
Sbjct: 113 PEALKSKVAEAMDVLRNVAQQQANSPTEQ 141
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 102/146 (69%), Gaps = 5/146 (3%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + K IR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS+
Sbjct: 53 LADAQKALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSA 112
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G S+G+ FV F+N+ +A AI+++NG L+ D ++FVG F +++RE
Sbjct: 113 FGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDRE 171
Query: 124 TVAIKTK---FNNVFVKNLDESTTDE 146
++ K F NV+VKN + DE
Sbjct: 172 A-ELQNKVNEFTNVYVKNFGDDMDDE 196
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 115/210 (54%), Gaps = 16/210 (7%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 99
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N +I K + L +R+ K+ NVF+KNLD+S ++ L + F +G I
Sbjct: 62 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 117
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S+ VM D G S+ + FV+F+N + A +A+E +NG D +VG+ + + +RE EL+
Sbjct: 118 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 176
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
+ V++F N+Y+KN GD +DDE
Sbjct: 177 K--------VNEFT--NVYVKNFGDDMDDE 196
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 26/202 (12%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
++V +L T++ L K F G + S + RD +S + +VNF DA KA++ +
Sbjct: 4 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 63
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLYIKNLGDSIDD 248
N FD +KG+ + M D + G+ N++IKNL SID+
Sbjct: 64 N---FD-----------------MIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN 103
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+ L E FS FG I S KVM D G S+G FV F A RA+ EMNG ++ L+V
Sbjct: 104 KTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVG 162
Query: 309 VAQRKEERRARLQAQFSQMRPV 330
+ +++R A LQ + ++ V
Sbjct: 163 RFKNRKDREAELQNKVNEFTNV 184
>gi|403354844|gb|EJY76981.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 590
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 151/542 (27%), Positives = 237/542 (43%), Gaps = 85/542 (15%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSF--GNIL-SCKIATDGSGQSKGFGFVQFENKESAQNA 97
N+FIKNLDKSI + L +TFS G+++ S K++ + S+G+GFV E A+ A
Sbjct: 101 NNLFIKNLDKSITSQQLDETFSKVLGGDVVVSAKVSINADYSSRGYGFVFLATPEQAEQA 160
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+ K + V + K RE I+ FNN+++KN + E +++IFG+YGT
Sbjct: 161 LAKASEFKFE-----VHPYQPKDRRE---IRKTFNNIYIKNFPSNWNKEKIEQIFGQYGT 212
Query: 158 ITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGKA 207
I S V+ G + F FV +E+ D+ A A+ N K++D + YV +A
Sbjct: 213 IKSTVIKMGKVQGTDQEAPFAFVCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEA 272
Query: 208 QKKSEREQELK---GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
K+ REQE K +F+ + K NLY+KN ++ +E+LK F ++G I S
Sbjct: 273 LPKTLREQEKKREQNRFKNSKKRC-------NLYVKNFPENTTEEQLKAYFEKYGEIESI 325
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR-----AR 319
K+ FV + PE A+ A + + + K L++ ++KE R+ AR
Sbjct: 326 KLNHKEGAAV--YAFVCYKNPESATYAKQQSQTQTLNGKQLFLNFYEQKEVRKIQQEDAR 383
Query: 320 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 379
+ F +R + ++ M P F Q L+
Sbjct: 384 DRTDFQNLRKQSPTSALNIDMLNRP-----------------------ETFQLLQYLMIT 420
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGGRR---GAGPVQQTQQPLPIMPHQMPPRGHAYRY 436
++ QG Q+ G R+ G QQ Q LP QMPP R
Sbjct: 421 IQRQQQNQRY--NNPQRQGGNMQQRGPRQQYNNQGGYQQRNQQLP--QGQMPPMNQQMRQ 476
Query: 437 PLGRNMQDFPFDMGAGSMLPV----PVDMGAGIPRRDASVGQP--MPITALSTALANASP 490
P P M + M + P M +P + Q I L +AL +P
Sbjct: 477 PQQ------PVIMPSQVMPALAQVAPSAMNQNLPPHILTYNQNGMSKIFPLVSAL---NP 527
Query: 491 EQQRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
++ +GE +Y VE+L D A K+TGML+++ E+ + LK K+ EA +L
Sbjct: 528 N-YKSQVGEFIYEHVEELAGEDLAPKITGMLIDLPIVEIQAYVTDFMKLKIKINEASTLL 586
Query: 550 RS 551
+S
Sbjct: 587 KS 588
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 26/186 (13%)
Query: 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI---ATDGSGQSKGFGFVQFENK 91
IRK+ NI+IKN + + + + F +G I S I G+ Q F FV +E+K
Sbjct: 182 IRKT-FNNIYIKNFPSNWNKEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAPFAFVCYEDK 240
Query: 92 ES-------AQNAIDKLNGMLINDKQVFVGH----FLRKQE--RETVAIKT--KFNNVFV 136
++ A NAI++ N + +++V LR+QE RE K K N++V
Sbjct: 241 DNKEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRFKNSKKRCNLYV 300
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA-----VEA 191
KN E+TT+E LK F +YG I S + + +G + + FV ++N + A A +
Sbjct: 301 KNFPENTTEEQLKAYFEKYGEIES-IKLNHKEG-AAVYAFVCYKNPESATYAKQQSQTQT 358
Query: 192 LNGKKF 197
LNGK+
Sbjct: 359 LNGKQL 364
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 42/238 (17%)
Query: 106 INDKQVFVGHFLRK---QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY---GTIT 159
IN KQ +L++ +R V K NN+F+KNLD+S T + L + F + +
Sbjct: 75 INGKQCRALPYLKEVTAAQRNNV---NKQNNLFIKNLDKSITSQQLDETFSKVLGGDVVV 131
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
SA V + D S+ +GFV + A +A+ + KF+ V Q K RE
Sbjct: 132 SAKVSINADYSSRGYGFVFLATPEQAEQALAKASEFKFE-----VHPYQPKDRRE----- 181
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV-MRDPSGISKGS- 277
+++T + N+YIKN + + EK++++F ++GTI S + M G + +
Sbjct: 182 -----IRKTFN-----NIYIKNFPSNWNKEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAP 231
Query: 278 -GFVAFST-------PEEASRALAEMNGKMIVSKPLYVAVA---QRKEERRARLQAQF 324
FV + P+ A A+ + N K LYV A +E+ + R Q +F
Sbjct: 232 FAFVCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRF 289
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 78/97 (80%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K IRIM+S RDPS+R+SG GNIFIKNLDKSID+KA++DTFS F
Sbjct: 70 ADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
GNILSCK+A D SKG+GFV FE +ESAQ AI+K+
Sbjct: 130 GNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L + FSS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+N ++ K + + +R+ ++ N+F+KNLD+S ++ + F +G I
Sbjct: 78 TMNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNIL 133
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
S V D + SK +GFV+FE + A KA+E +
Sbjct: 134 SCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 17/161 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + + +Q+ + G N++IKNL SID++ +
Sbjct: 79 MNFDMMYGKPIRIMWSQRDPSMRRSGAG----------------NIFIKNLDKSIDNKAI 122
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292
+ FS FG I SCKV D SKG GFV F T E A +A+
Sbjct: 123 YDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAI 163
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
MN M+ KP+ + +QR R
Sbjct: 79 MNFDMMYGKPIRIMWSQRDPSMR 101
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 111/192 (57%), Gaps = 32/192 (16%)
Query: 215 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 274
QELK Q+E A E + K+QG+NL++KNL DS+DDEKL+E FS FGTI S KVMR G S
Sbjct: 1 QELKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKS 60
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR--- 328
K GFV FSTPEEA+RA+ E N +++ KPLYVA+AQRKE RRA+L Q +QMR
Sbjct: 61 KNFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARNQMRYQQ 120
Query: 329 ----------------PVAMGPSVPPR-MPMYPPGPSGLG---QQF-----LYGQAPPAI 363
P+ G +PPR +P P P G QQF +YG
Sbjct: 121 ATAAAAAAGIPGQFLQPMFYG-VMPPRGVPFNGPNPQMSGVPPQQFRNGPGVYGMPAQGS 179
Query: 364 IPPQAGFGYQQQ 375
PP F Q+Q
Sbjct: 180 FPPNDQFFQQKQ 191
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 55/90 (61%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+FVKNLD+S DE L++ F +GTI SA VMR DGKSK FGFV F ++A +A+
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFE 222
N + + YV AQ+K R +L Q +
Sbjct: 82 NQQIVAGKPLYVAIAQRKEVRRAQLAQQVQ 111
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+F+KNLD S+D + L + FS FG I+S K+ G+SK FGFV F E A AI +
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 102 NGMLINDKQVFVGHFLRKQER 122
N ++ K ++V RK+ R
Sbjct: 82 NQQIVAGKPLYVAIAQRKEVR 102
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + + +AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 189 QKQRQALGEELYKKVSAKTSDEEAAGKITGMILDLPPQEVMPLLENNELFEQHFKEAFAA 248
Query: 549 LRS 551
S
Sbjct: 249 YES 251
>gi|260656096|pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 139 bits (349), Expect = 6e-30, Method: Composition-based stats.
Identities = 64/92 (69%), Positives = 81/92 (88%), Gaps = 1/92 (1%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK 91
DPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +
Sbjct: 3 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 61
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 62 EAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 93
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 13 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 71
Query: 296 NGKMIVSKPLYVAVAQRKEERRA 318
NG ++ + ++V + ++ER A
Sbjct: 72 NGMLLNDRKVFVGRFKSRKEREA 94
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 8 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 66
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQE 216
A+E +NG +DR+ +VG+ + + ERE E
Sbjct: 67 AIEKMNGMLLNDRKVFVGRFKSRKEREAE 95
>gi|170042459|ref|XP_001848942.1| polyadenylate-binding protein [Culex quinquefasciatus]
gi|167866018|gb|EDS29401.1| polyadenylate-binding protein [Culex quinquefasciatus]
Length = 339
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 141/256 (55%), Gaps = 33/256 (12%)
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
FSS GN+LSCK+A D G SKG+ FV F SA +AID++NG+ +N
Sbjct: 2 FSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGA----------- 50
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++A+ F + V+N + T L+++F YG+I + V KS+ GF+ ++
Sbjct: 51 ---SLAVSPLFTKLHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYD 101
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFEQAMKETVDKFQGLNLYI 239
+ + A A+EALNGK D GKA + E+ L+ A E V +++
Sbjct: 102 SPEAAGHALEALNGKALSD-----GKALRVVPVPERVLQPAPRLAEGEAV------QVFV 150
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
+NL SID+ L ELF+ +G + ++++ G SKG GFV +++ E+A+RA+ EMN +
Sbjct: 151 RNLDASIDNRHLGELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDRE 209
Query: 300 IVSKPLYVAVAQRKEE 315
+ K +YV +A+ KE+
Sbjct: 210 VAGKRIYVVLARGKEK 225
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 6 SAARALDVLNFTPLNN-KSIRIM-----YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHD 59
+A AL+ LN L++ K++R++ P + + +F++NLD SID++ L +
Sbjct: 105 AAGHALEALNGKALSDGKALRVVPVPERVLQPAPRLAEGEAVQVFVRNLDASIDNRHLGE 164
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
F+ +G++ I + G+SKGFGFV + + E A AI ++N + K+++V
Sbjct: 165 LFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDREVAGKRIYV 217
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 254 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308
+FS G + SCKV D G SKG FV F A A+ +NG + L V+
Sbjct: 1 MFSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVS 55
>gi|403339745|gb|EJY69134.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 593
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 144/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGFVQFENKESAQN 96
T + +KNLDKSI + L + F+ FG+ +LS K++ + S+G+GFVQF + A+
Sbjct: 103 TNFLLVKNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGFVQFACPQLAEQ 162
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+ K + + ++ + ++E ++ FNN+++KN + E +++IFG+YG
Sbjct: 163 ALAKASEF---NFEISTHQPMNREE-----LRKTFNNIYIKNFPSNWNKEKIEEIFGQYG 214
Query: 157 TITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGK 206
TI S VVM G + F FV +E+ D+ A A+ N K++D + V +
Sbjct: 215 TIKSTVVMMGKVQGTDQEAPFAFVCYEDPDNKEYGPKCAQNAITQENDKEYDGFKLQVKE 274
Query: 207 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
A KS REQE K + + +K + + NLY+KN ++ ++E+LK F ++G I K+
Sbjct: 275 ALPKSLREQE-KQREQNRLKNSKKR---CNLYVKNFPENTNEEQLKAYFEKYGEIERIKL 330
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR-----ARLQ 321
+ FV + PE A+ A + + + K L++ ++KE R+ AR +
Sbjct: 331 IHKEGAAV--YAFVCYKNPESATYAKQQSQTQTLNGKQLFLNFYEQKEVRKIQQEDARDR 388
Query: 322 AQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR 381
F +R + ++ M P F Q L+ ++
Sbjct: 389 TDFQNLRKQSPTSALNIDMLNRP-----------------------ETFQLLQYLMITIQ 425
Query: 382 PAGAPMPNFFVPVVSQGQQGQRPGGRR---GAGPVQQTQQPLPIMPHQMPPRGHAYRYPL 438
QG Q+ G R+ G QQ Q LP QMPP R P
Sbjct: 426 RQQQNQRY--NNPQRQGGNMQQRGPRQQYNNQGGYQQRNQQLP--QGQMPPMNQQMRQPQ 481
Query: 439 GRNMQDFPFDMGAGSMLPV----PVDMGAGIPRRDASVGQPMPITALSTA--LANASPEQ 492
P M + M + P M +P + Q +S L +A
Sbjct: 482 Q------PVIMPSQVMPALAQVAPSAMNQNLPPHILTYNQ----NGMSKIFPLVSALNPN 531
Query: 493 QRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
++ +GE +Y VE+L D A K+TGML+++ E+ + LK K+ EA +L+S
Sbjct: 532 YKSQVGEFIYEHVEELAGEDLAPKITGMLIDLPIVEIQAYVTDFMKLKIKINEASTLLKS 591
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 41/186 (22%)
Query: 130 KFNNVFVKNLDESTT----DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
K N + VKNLD+S T DE K+FG+ + SA V + D S+ +GFV F A
Sbjct: 102 KTNFLLVKNLDKSITSQQLDEIFAKVFGD-DAVLSAKVSINSDYSSRGYGFVQFACPQLA 160
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+A+ + F+ + RE EL+ F N+YIKN +
Sbjct: 161 EQALAKASEFNFE------ISTHQPMNRE-ELRKTFN-------------NIYIKNFPSN 200
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGS------GFVAFSTPEE-------ASRAL 292
+ EK++E+F ++GTI S VM G +G+ FV + P+ A A+
Sbjct: 201 WNKEKIEEIFGQYGTIKSTVVM---MGKVQGTDQEAPFAFVCYEDPDNKEYGPKCAQNAI 257
Query: 293 AEMNGK 298
+ N K
Sbjct: 258 TQENDK 263
>gi|297733643|emb|CBI14890.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 66/72 (91%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLN K +RIMYSHRDPSIRKSGT NIFIKNLDK IDHKALHDTFS+FGN
Sbjct: 279 AARALDVLNFTPLNGKPLRIMYSHRDPSIRKSGTENIFIKNLDKGIDHKALHDTFSAFGN 338
Query: 67 ILSCKIATDGSG 78
ILSCK ATD SG
Sbjct: 339 ILSCKEATDASG 350
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
N DAA+A++ LN + + + + + ++ K N++IK
Sbjct: 275 NPQDAARALDVLNFTPLNGKPLRIMYSHRDP----------------SIRKSGTENIFIK 318
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 273
NL ID + L + FS FG I SCK D SG+
Sbjct: 319 NLDKGIDHKALHDTFSAFGNILSCKEATDASGM 351
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
N + A A+D LN +N K + + + R+ K+ N+F+KNLD+ + L
Sbjct: 275 NPQDAARALDVLNFTPLNGKPLRIMY----SHRDPSIRKSGTENIFIKNLDKGIDHKALH 330
Query: 150 KIFGEYGTITSAVVMRDGDGKSKC 173
F +G I S D G C
Sbjct: 331 DTFSAFGNILSCKEATDASGMQGC 354
>gi|440302784|gb|ELP95091.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 546
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 20/304 (6%)
Query: 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
M +A R + LN ++ K I + ++ +D R N+F+KN+ KS++ K L D
Sbjct: 70 MSTHDAAKRVISTLNGVMVDGKPINMFWALKDFKQRTDTQTNLFVKNIKKSVNQKELQDV 129
Query: 61 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLRK 119
FS+ G LS K++ + G+S GFG+V++ E+ Q A+DK + + ++ FV K
Sbjct: 130 FSAIGETLSVKLSLNEKGESNGFGYVKYRTLEATQAALDKSDELKAKIGEETFVVQKFEK 189
Query: 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA------VVMRDGDGKSKC 173
Q K++ N++V N+D+ T+E K F +G I V+ + K
Sbjct: 190 QN------KSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTA 243
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 233
GFV+FEN +DAAKAV A + E V + K ER +E K + + K++
Sbjct: 244 KGFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKGKYK 303
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM---RDPSGISKGSGFVAFSTPEEASR 290
NLY+ L +SI +++++E E G I S + R P+G++ ++ ++T E A+
Sbjct: 304 DFNLYVDTLKESITEKEIREGLGEEGEIYSLSIRWVDRKPTGVA----YLCYTTAEGANN 359
Query: 291 ALAE 294
A+ +
Sbjct: 360 AIVK 363
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 130/277 (46%), Gaps = 35/277 (12%)
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERET 124
++S + + S ++ ++A+ I LNG++++ K + + L+ KQ +T
Sbjct: 49 VVSIHVTKNESHFDTPIAYINMSTHDAAKRVISTLNGVMVDGKPINMFWALKDFKQRTDT 108
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
N+FVKN+ +S ++L+ +F G S + + G+S FG+V + +
Sbjct: 109 QT------NLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLNEKGESNGFGYVKYRTLEA 162
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A++ K D+ + +G+ E + +FE+ +K + NLY+ N+
Sbjct: 163 TQAALD-----KSDELKAKIGE-------ETFVVQKFEKQ-----NKSRKTNLYVYNIDK 205
Query: 245 SIDDEKLKELFSEFGTI--TSCK------VMRDPSGISKGSGFVAFSTPEEASRALAEMN 296
+ +E+ + F FG I TS K V + +KG FV F E+A++A++
Sbjct: 206 KVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKG--FVDFENEEDAAKAVSAPK 263
Query: 297 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 333
++ + + VA + KEERR +A+ ++++ G
Sbjct: 264 NSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKG 300
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 144/275 (52%), Gaps = 8/275 (2%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+++ NL S+ L + F FG I+ ++ D +G S+G+GFV++ + A AI +
Sbjct: 298 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 357
Query: 101 LNGMLINDK--QVFVGHFLRKQERETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+NG L+ + +V V F ++ K T ++V NL S + L +F +G
Sbjct: 358 MNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 417
Query: 158 ITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
+T+A V +D G SK +GFV + + AA+AV LNG+ D R+ V + S
Sbjct: 418 VTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNS 477
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS-K 275
+ TV + NLY+ N+ SID +KL ELF FG IT +V+ DP S K
Sbjct: 478 --AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 535
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
G GF+ F+ E A++A+A MNG ++ + + V VA
Sbjct: 536 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 570
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 34/337 (10%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGT--------GNIFIKNLDKSIDHKAL 57
SA +A+ +N + + I + + PS S ++I NL +S+ +
Sbjct: 547 SATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKM 606
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F+ FG I + + + V + + SA A+ ++G ++ K++ V
Sbjct: 607 VNLFAPFGQITKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV---- 655
Query: 118 RKQERETVAI---------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
++ E T + N++V + S T++ +F +G + A + R
Sbjct: 656 KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR--- 712
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 228
+ +G V F+N AA A++ L+G + V A +E Q
Sbjct: 713 --FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNE 770
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 287
+ NLY+ +L +++E+L +LF G IT KV+ + +G+SKG GFV F+
Sbjct: 771 QGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYS 830
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
A+ AL MNG + L V +A + + A F
Sbjct: 831 AAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 867
>gi|400260942|pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
gi|400260943|pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 133 bits (334), Expect = 3e-28, Method: Composition-based stats.
Identities = 65/108 (60%), Positives = 86/108 (79%), Gaps = 3/108 (2%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 98
G+GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI
Sbjct: 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 62
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTT 144
+K+NGML+ND++VFVG F ++ERE A +F NV++KN +T
Sbjct: 63 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGST 110
Score = 78.6 bits (192), Expect = 8e-12, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 65
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQA---QFSQMRPVAMGP 334
NG ++ + ++V + ++ER A L A +F+ + GP
Sbjct: 66 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGP 107
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 11/111 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 65
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G
Sbjct: 66 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFG 106
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 82/101 (81%), Gaps = 1/101 (0%)
Query: 226 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 285
++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+P
Sbjct: 2 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 60
Query: 286 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
EEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 61 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 101
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 70
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 71 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 103
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 70
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG ++ K ++V RK+ER+
Sbjct: 71 NGRIVATKPLYVALAQRKEERQ 92
>gi|168018575|ref|XP_001761821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686876|gb|EDQ73262.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 153
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/145 (58%), Positives = 108/145 (74%), Gaps = 8/145 (5%)
Query: 434 YRY-PLGRNMQDF--PFDMGAGSMLPVPVDMGAGIPRRDASVG---QPMPITALSTALAN 487
+RY P RN D P +MLPVP+++G G P + G QP+PI+AL++ALA+
Sbjct: 10 FRYIPNARNTPDVSVPPQGIINTMLPVPLEIG-GAPAANVDPGVPQQPLPISALASALAS 68
Query: 488 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 547
A P+QQR +LGE LYPLV+QLE D A KVTGMLLEMDQTEVLHL+ESP+ALKAKVAEAME
Sbjct: 69 APPDQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVLHLIESPDALKAKVAEAME 128
Query: 548 VLRSVAQQQANNPADQLASLSLNEN 572
VLR +AQ + P DQL +LS++++
Sbjct: 129 VLR-MAQAVPSAPTDQLGNLSISDS 152
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 143/284 (50%), Gaps = 5/284 (1%)
Query: 29 SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQ 87
+H + +++ N+F+ NL S+ L + F FG I+ ++ D +G SKG+GFVQ
Sbjct: 217 AHDEGKLKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQ 276
Query: 88 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 147
+ + A AI +NG ++ + + V L + + ++V NL ++
Sbjct: 277 YSDPRYAAEAIKHMNGRMVEGRMLEVR--LAGAPSSGSTKEMDMSKLYVCNLPLLLHEDK 334
Query: 148 LKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206
L +F YG +TS VMRD G SK +GFV + + AA A+ LNG + ++ V
Sbjct: 335 LHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRV 394
Query: 207 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
A S + + + N+Y++NL ++ +KL LF +G +TS KV
Sbjct: 395 AAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKV 454
Query: 267 MRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
D SGISKG GFV FS P +A+ A+ E+NG ++ + + V V
Sbjct: 455 AMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVRV 498
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 141/291 (48%), Gaps = 21/291 (7%)
Query: 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 92
S ++ +++ NL + LHD F +G + S K+ D +G SKG+GFV++ + +
Sbjct: 312 STKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQ 371
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK------------TKFNNVFVKNLD 140
A +AI +LNG LI K++ V +++ +NV+V+NL
Sbjct: 372 HAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLP 431
Query: 141 ESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199
+ L +F YG +TSA V M G SK +GFV F + DAA AV LNG +
Sbjct: 432 LLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEG 491
Query: 200 REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 259
R+ V S E A T+ + NLY+ N+ S++ KL ELF FG
Sbjct: 492 RKILVRVRPPSSPVES-------HANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFG 544
Query: 260 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
IT V+ + SKG GFV F+ A+ A+A MNG +I + + V VA
Sbjct: 545 RITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVA 595
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 131/328 (39%), Gaps = 31/328 (9%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NL +++ L F FG I D + FV + + SA A+ ++
Sbjct: 625 LYVTNLPQTMSADKLVSLFMPFGQI-------DRVVMYAEYSFVLYADINSAAKALKHMD 677
Query: 103 GMLINDKQVFV----------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
G LI K++ V Q + + N++V + + T E L +IF
Sbjct: 678 GYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIF 737
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212
YG I A G +G + + NA AA A++ L+G + V A +E
Sbjct: 738 CLYGEIVQAKKFDAG------YGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAE 791
Query: 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-S 271
+ + Q + NLY+ L + +KL ELF G IT KV+ D +
Sbjct: 792 SDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFT 851
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 331
G+SKG GFV F+ A+ A+ MNG + L V A + A A F
Sbjct: 852 GVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAGVQPSDMASYMAHFYSY---- 907
Query: 332 MGPSVPPRMPMYPPGPSGLGQQFLYGQA 359
+ P RM + P + YGQ+
Sbjct: 908 FTSTDPSRMAVGIPTSD---WSYYYGQS 932
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 198 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
DD++ ++ K Q+ S +G+ ++ G NL++ NL S+ KL ELF
Sbjct: 200 DDQDKHLCKRQELSFSSAHDEGKLKEG--------NGTNLFVGNLPPSLASHKLIELFLP 251
Query: 258 FGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
FG I +V+ D +G SKG GFV +S P A+ A+ MNG+M+ + L V +A
Sbjct: 252 FGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHMNGRMVEGRMLEVRLA 305
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 145/284 (51%), Gaps = 15/284 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+++ NL S+ L + F FG I+ ++ D +G S+G+GFV++ + A AI +
Sbjct: 297 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 356
Query: 101 LNGMLINDK--QVFVGHFLRKQERETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+NG L+ + +V V F ++ K T ++V NL S + L +F +G
Sbjct: 357 MNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 416
Query: 158 ITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG---------KA 207
+T+A V +D G SK +GFV + + AA+AV LNG+ D R+ V +
Sbjct: 417 VTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNS 476
Query: 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 267
+S + TV + NLY+ N+ SID +KL ELF FG IT +V+
Sbjct: 477 AVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVV 536
Query: 268 RDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
DP S KG GF+ F+ E A++A+A MNG ++ + + V VA
Sbjct: 537 ADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 580
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 34/337 (10%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGT--------GNIFIKNLDKSIDHKAL 57
SA +A+ +N + + I + + PS S ++I NL +S+ +
Sbjct: 557 SATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKM 616
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F+ FG I + + + V + + SA A+ ++G ++ K++ V
Sbjct: 617 VNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV---- 665
Query: 118 RKQERETVAI---------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
++ E T + N++V + S T++ +F +G + A + R
Sbjct: 666 KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR--- 722
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 228
+ +G V F+N AA A++ L+G + V A +E Q
Sbjct: 723 --FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNE 780
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 287
+ NLY+ +L +++E+L +LF G IT KV+ + +G+SKG GFV F+
Sbjct: 781 QGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYS 840
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
A+ AL MNG + L V +A + + A F
Sbjct: 841 AAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 877
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 144/275 (52%), Gaps = 8/275 (2%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+++ NL S+ L + F FG I+ ++ D +G S+G+GFV++ + A AI +
Sbjct: 210 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 269
Query: 101 LNGMLINDK--QVFVGHFLRKQERETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+NG L+ + +V V F ++ K T ++V NL S + L +F +G
Sbjct: 270 MNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 329
Query: 158 ITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
+T+A V +D G SK +GFV + + AA+AV LNG+ D R+ V + S
Sbjct: 330 VTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNS 389
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS-K 275
+ TV + NLY+ N+ SID +KL ELF FG IT +V+ DP S K
Sbjct: 390 --AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 447
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
G GF+ F+ E A++A+A MNG ++ + + V VA
Sbjct: 448 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 482
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 34/337 (10%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGT--------GNIFIKNLDKSIDHKAL 57
SA +A+ +N + + I + + PS S ++I NL +S+ +
Sbjct: 459 SATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKM 518
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F+ FG I + + + V + + SA A+ ++G ++ K++ V
Sbjct: 519 VNLFAPFGQITKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV---- 567
Query: 118 RKQERETVAI---------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
++ E T + N++V + S T++ +F +G + A + R
Sbjct: 568 KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR--- 624
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 228
+ +G V F+N AA A++ L+G + V A +E Q
Sbjct: 625 --FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNE 682
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 287
+ NLY+ +L +++E+L +LF G IT KV+ + +G+SKG GFV F+
Sbjct: 683 QGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYS 742
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
A+ AL MNG + L V +A + + A F
Sbjct: 743 AAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 779
>gi|403355493|gb|EJY77324.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 590
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 144/542 (26%), Positives = 235/542 (43%), Gaps = 85/542 (15%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGFVQFENKESAQNA 97
N+ ++NLDKSI + L + F+ FG+ +LS K++ + S+G+GFV F + A+ A
Sbjct: 101 NNLKVQNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGFVLFACPQLAEQA 160
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+ K + F Q ++ ++ FNN+++ N + E +++IFG+YGT
Sbjct: 161 LAKASE--------FNFEISPHQPKDRRELRKTFNNIYINNFPSNWNKEKIEQIFGQYGT 212
Query: 158 ITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGKA 207
I S V+ G + F FV +E+ D+ A A+ N K++D + YV +A
Sbjct: 213 IKSTVIKMGKVQGTDQEAPFAFVCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEA 272
Query: 208 QKKSEREQELK---GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
K+ REQE K +F+ + K NLY+KN ++ +E+LK F ++G I S
Sbjct: 273 LPKTLREQEKKREQNRFKNSKKRC-------NLYVKNFPENTTEEQLKAYFEKYGEIESI 325
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR-----AR 319
K+ FV + PE A+ A + + + K L++ ++KE R+ AR
Sbjct: 326 KLNHKEGAAV--YAFVCYKNPESATYAKQQSQTQTLNGKQLFLNFYEQKEVRKIQQEDAR 383
Query: 320 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 379
+ F +R + ++ M P F Q L+
Sbjct: 384 DRTDFQNLRKQSPTSALNIDMLNRP-----------------------ETFQLLQYLMIT 420
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGGRR---GAGPVQQTQQPLPIMPHQMPPRGHAYRY 436
++ QG Q+ G R+ G QQ Q LP QMPP R
Sbjct: 421 IQRQQQNQRY--NNPQRQGGNMQQRGPRQQYNNQGGYQQRNQQLP--QGQMPPMNQQMRQ 476
Query: 437 PLGRNMQDFPFDMGAGSMLPV----PVDMGAGIPRRDASVGQP--MPITALSTALANASP 490
P P M + M + P M +P + Q I L +AL +P
Sbjct: 477 PQQ------PVIMPSQVMPALAQVAPSAMNQNLPPHILTYNQNGMSKIFPLVSAL---NP 527
Query: 491 EQQRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
++ +GE +Y VE+L D A K+TGML+++ E+ + LK K+ EA +L
Sbjct: 528 N-YKSQVGEFIYEHVEELAGEDLAPKITGMLIDLPIVEIQAYVTDFMKLKIKINEASTLL 586
Query: 550 RS 551
+S
Sbjct: 587 KS 588
>gi|402466517|gb|EJW01988.1| hypothetical protein EDEG_03560 [Edhazardia aedis USNM 41457]
Length = 571
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 116/198 (58%), Gaps = 5/198 (2%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIR--KSGTGNIFIKNLDKSIDHKALHDTFSS 63
A +A+ LNF L+ IR+M ++ +++ K G NI +KNL S D+K L+DTFS
Sbjct: 61 CALKAVQNLNFAELHGTQIRVMLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSV 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER- 122
FG+I+S K+A D + KGFGFV +++K S + AI +G +N + V FLRK++R
Sbjct: 121 FGDIISSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRV 180
Query: 123 -ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
E I+ F N ++KN ++E LK+I YG ITS VV R+ D K F F NF++
Sbjct: 181 VEKDKIEELFTNCYIKNFG-GLSEEQLKEICANYGEITSFVVPRNADNSLKGFAFCNFKD 239
Query: 182 ADDAAKAVEALNGKKFDD 199
A KA+E L+ +D
Sbjct: 240 HVSAKKAIEDLHDLSIED 257
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 18/261 (6%)
Query: 57 LHDTFSSFGNILSCKIATDGSGQSKG---FGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
LH FS+ G +LS K+ + + +S G + +V +EN + A A+ LN ++ Q+ V
Sbjct: 22 LHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQNLNFAELHGTQIRV 81
Query: 114 GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 173
L +++ K N+ VKNL S ++ L F +G I S+ V D + K K
Sbjct: 82 --MLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFGDIISSKVAVDSENKPKG 139
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 233
FGFV +++ KA+ +G + V K +K +R E K + E+
Sbjct: 140 FGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVE-KDKIEELFT------- 191
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
N YIKN G + +E+LKE+ + +G ITS V R+ KG F F A +A+
Sbjct: 192 --NCYIKNFG-GLSEEQLKEICANYGEITSFVVPRNADNSLKGFAFCNFKDHVSAKKAIE 248
Query: 294 EMNGKMI--VSKPLYVAVAQR 312
+++ I + + + +++R
Sbjct: 249 DLHDLSIEDICEKFDIKISKR 269
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 46/256 (17%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK---CFGFVNFENADDAAKAVE 190
V+V +L+ T D DL ++F GT+ S ++ + + +S C+ +VN+EN+D A KAV+
Sbjct: 8 VYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQ 67
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
LN + + V K ++ LKGQ K N+ +KNL S D++
Sbjct: 68 NLNFAELHGTQIRVMLYNK----QKNLKGQ----------KIGKYNIIVKNLPVSCDNKT 113
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L + FS FG I S KV D KG GFV + +A+ +G + L VA
Sbjct: 114 LYDTFSVFGDIISSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKF 173
Query: 311 QRKEER---RARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL------YGQAPP 361
RKE+R + +++ F+ Y GL ++ L YG+
Sbjct: 174 LRKEDRVVEKDKIEELFTN---------------CYIKNFGGLSEEQLKEICANYGEITS 218
Query: 362 AIIPPQA-----GFGY 372
++P A GF +
Sbjct: 219 FVVPRNADNSLKGFAF 234
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
N+ D A E L ++ +Y+ +AQ + ER + LK ++A +E + + NLYI
Sbjct: 341 NSSDLNAAFENLKITTVEN--FYIQRAQTRQERHEFLKEFIKKAAEENLSYKR--NLYIT 396
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF--VAFSTPEEASRALAEMNGK 298
L + ++ + E+FS+ GTIT+ K+ S I+ G F + + TPEEA AL N
Sbjct: 397 TLPPTASEKDVLEIFSKHGTITNFKL---KSDINTGLKFCYICYKTPEEALIALERGNET 453
Query: 299 MIVSKPLYVAVAQRKEERR 317
++ L V+ + K+ER+
Sbjct: 454 ILDGHKLNVSFFKTKKERQ 472
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 15/284 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+++ NL S+ L + F FG I+ ++ D +G S+G+GFV++ + A AI +
Sbjct: 294 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 353
Query: 101 LNGMLINDK--QVFVGHFLRKQERETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+NG L+ +V V F ++ K T ++V NL S + L +F +G
Sbjct: 354 MNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 413
Query: 158 ITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG---------KA 207
+T+A V +D G SK +GFV + + AA+AV LNG+ D R+ V +
Sbjct: 414 VTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNS 473
Query: 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 267
+S + TV + NLY+ N+ SID +KL ELF FG IT +V+
Sbjct: 474 AVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVV 533
Query: 268 RDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
DP S KG GF+ F+ E A++A+A MNG ++ + + V VA
Sbjct: 534 ADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 577
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 34/337 (10%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGT--------GNIFIKNLDKSIDHKAL 57
SA +A+ +N + + I + + PS S ++I NL +S+ +
Sbjct: 554 SATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKM 613
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F+ FG I + + + V + + SA A+ ++G ++ K++ V
Sbjct: 614 VNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV---- 662
Query: 118 RKQERETVAI---------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
++ E T + N++V + S T++ +F +G + A + R
Sbjct: 663 KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR--- 719
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 228
+ +G V F+N AA A++ L+G + V A +E Q
Sbjct: 720 --FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNE 777
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 287
+ NLY+ +L +++E+L +LF G IT KV+ + +G+SKG GFV F+
Sbjct: 778 QGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYS 837
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
A+ AL MNG + L V +A + + A F
Sbjct: 838 AAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 874
>gi|406602053|emb|CCH46373.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 694
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
GNI+++ L I + L F FG I S KI D G+SKG+GF+ + + SA +AI K
Sbjct: 129 GNIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISK 188
Query: 101 LNGMLINDKQVFVGHFLRKQER-ETVAI-KTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
LNG+L+N ++++ H + K+ER + + K+ F N+++KNL T + + +F ++G I
Sbjct: 189 LNGLLVNGSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQFESLFAKFGEI 248
Query: 159 TSAVV--MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY-VGKAQKKSEREQ 215
+S+ + + DGD SK FGF+NF+N + A A+E+LN + ++ V +AQ++ ER +
Sbjct: 249 SSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRDERNE 308
Query: 216 EL 217
+
Sbjct: 309 QF 310
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 13/192 (6%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++V+ L T EDL KIF +G ITS+ ++ D G+SK +GF+N+ + A A+ L
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKL 189
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
NG + + Y+ K ER Q + FE++ NLYIKNL ++ +
Sbjct: 190 NGLLVNGSKLYLNHHIAKKERIQRI--DFEKS--------NFTNLYIKNLPIDYTIDQFE 239
Query: 253 ELFSEFGTITSCKV--MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAV 309
LF++FG I+S + + D SK GF+ F E A A+ +N I ++ L V+
Sbjct: 240 SLFAKFGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSR 299
Query: 310 AQRKEERRARLQ 321
AQR++ER +
Sbjct: 300 AQRRDERNEQFH 311
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 24/149 (16%)
Query: 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292
Q NLY++NL SIDD L F+ FG I S K+M G S+G GFV F T EASRAL
Sbjct: 423 QPSNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRAL 482
Query: 293 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP--SGL 350
M+G ++ + L+V+ AQ+ ++R G ++P++P G +GL
Sbjct: 483 IAMHGNVLHGQMLHVSFAQKNNKKR--------------FGKQQQQQIPIHPNGSYYNGL 528
Query: 351 GQ-------QFLYGQAPPAIIPPQAGFGY 372
Q Q+ QA +PP +G GY
Sbjct: 529 YQNPNQPPYQYYNTQAGQP-VPPPSGNGY 556
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 214 EQELKGQFEQAMKETVDKFQGL----NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
E+ K +F Q E +F L N+Y++ LG I E L ++F FG ITS K++ D
Sbjct: 106 EKSFKLKFPQV--EISVEFDALTHPGNIYVRGLGPEITTEDLFKIFEPFGEITSSKIVND 163
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320
G SKG GF+ +S A A++++NG ++ LY+ K+ER R+
Sbjct: 164 EFGRSKGYGFINYSDGSSADDAISKLNGLLVNGSKLYLNHHIAKKERIQRI 214
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
N++++NL SID LH +F+ FG I+S KI T G+S+G+GFV F A A+
Sbjct: 425 SNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIA 484
Query: 101 LNGMLINDKQVFVGHFLRKQERE 123
++G +++ + + V F +K ++
Sbjct: 485 MHGNVLHGQMLHVS-FAQKNNKK 506
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++V+NL S D L F +G I SA +M +G+S+ +GFV F + +A++A+ A+
Sbjct: 426 NLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIAM 485
Query: 193 NGKKFDDREWYVGKAQKKSER 213
+G + +V AQK +++
Sbjct: 486 HGNVLHGQMLHVSFAQKNNKK 506
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 35 IRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILSCKIA--TDGSGQSKGFGFVQFEN 90
KS N++IKNL D +ID F+ FG I S + DG SK FGF+ F+N
Sbjct: 216 FEKSNFTNLYIKNLPIDYTIDQ--FESLFAKFGEISSSFLPDLNDGDQTSKRFGFINFKN 273
Query: 91 KESAQNAIDKLNGMLINDKQVF-VGHFLRKQER 122
ESA +AI+ LN I+ Q V R+ ER
Sbjct: 274 HESAISAIESLNNFEISPNQFLSVSRAQRRDER 306
>gi|402697283|gb|AFQ90829.1| polyA-binding protein cytoplasmic 1, partial [Dibamus sp. JJF-2012]
Length = 177
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
Query: 46 KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 105
KNLDKSID+KAL+DT S+ GNILS K+ D +G SKG+G V FE +E+A+ AI+K
Sbjct: 1 KNLDKSIDNKALYDTXSAXGNILSXKVVCDENG-SKGYGXVHFEXQEAAERAIEKXXXXX 59
Query: 106 INDKQVFVGHFLRKQERETVAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
NV++KN E D LK++FG++G V
Sbjct: 60 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVYIKNFGEXMDDXRLKELFGKFGPALXVKV 119
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
M D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+A KK ER+ ELK +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKQIYVGRAXKKVERQTELKRKF 177
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 91/188 (48%), Gaps = 11/188 (5%)
Query: 137 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 196
KNLD+S ++ L G I S V+ D +G SK +G V+FE + A +A+E
Sbjct: 1 KNLDKSIDNKALYDTXSAXGNILSXKVVCDENG-SKGYGXVHFEXQEAAERAIE------ 53
Query: 197 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+ N+YIKN G+ +DD +LKELF
Sbjct: 54 ----KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVYIKNFGEXMDDXRLKELFG 109
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
+FG KVM D SG SKG GFV+F E+A +A+ MNGK + K +YV A +K ER
Sbjct: 110 KFGPALXVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKQIYVGRAXKKVER 169
Query: 317 RARLQAQF 324
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKN + +D L + F FG L K+ TD SG+SKGFGFV FE E AQ A+D +
Sbjct: 89 NVYIKNFGEXMDDXRLKELFGKFGPALXVKVMTDESGKSKGFGFVSFERHEDAQKAVDXM 148
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKF 131
NG +N KQ++VG +K ER+T +K KF
Sbjct: 149 NGKELNGKQIYVGRAXKKVERQT-ELKRKF 177
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 79/98 (80%)
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 288
+++ QG NLY+KNL D+IDD +LKE FS+FG+ITS KVM D G SKG GFV F+T EEA
Sbjct: 1 MNRTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEA 60
Query: 289 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
S+A+ EM+G++IVSKPLYV AQRKEER+A L +Q++
Sbjct: 61 SKAINEMSGRIIVSKPLYVTFAQRKEERKAFLASQYNH 98
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
N+++KNLD +ID L + FS FG+I S K+ D G SKGFGFV F +E A AI++
Sbjct: 7 ANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEASKAINE 66
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 133
++G +I K ++V RK+ER+ + +++N+
Sbjct: 67 MSGRIIVSKPLYVTFAQRKEERKAF-LASQYNH 98
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
+T+ N++VKNLD++ D LK+ F ++G+ITSA VM D G SK FGFV F ++A+K
Sbjct: 3 RTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEASK 62
Query: 188 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
A+ ++G+ + YV AQ+K ER+ L Q+
Sbjct: 63 AINEMSGRIIVSKPLYVTFAQRKEERKAFLASQYNH 98
>gi|167391953|ref|XP_001739964.1| nucleolysin TIAR [Entamoeba dispar SAW760]
gi|165896141|gb|EDR23641.1| nucleolysin TIAR, putative [Entamoeba dispar SAW760]
Length = 306
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 139/264 (52%), Gaps = 20/264 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++ + + +S+D L FS G+++SCKI D SG G+GFV+F + +A+ A D +
Sbjct: 44 SVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGTHAGYGFVEFVDSTTARFAKDNM 103
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
+G ++ +++ V Q+ + K +FV L D+ L K F ++G +T A
Sbjct: 104 DGRVVYGRELKVNWSYTAQQENQGSYK-----IFVGGLQPEVNDDLLYKTFQKFGRVTDA 158
Query: 162 VVMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQE 216
V++ GKSK +GFV F +DA A++ +NG+K + R W K+E+
Sbjct: 159 RVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQP-- 216
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
K +++ ET Q +YI N+ +++ + LK+L +E+G+I ++ +D KG
Sbjct: 217 -KRSYDEINNET--SIQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD-----KG 268
Query: 277 SGFVAFSTPEEASRALAEMNGKMI 300
F+ FS E A+ A+ NGK+I
Sbjct: 269 YAFIKFSKHESATSAILMCNGKII 292
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 19/207 (9%)
Query: 2 FMLSSAAR-ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F+ S+ AR A D ++ + + +++ +S+ G+ IF+ L ++ L+ T
Sbjct: 90 FVDSTTARFAKDNMDGRVVYGRELKVNWSYTAQQ-ENQGSYKIFVGGLQPEVNDDLLYKT 148
Query: 61 FSSFGNILSCKIAT-DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR- 118
F FG + ++ +G+SKG+GFV F KE A+ A+ +NG + + + V
Sbjct: 149 FQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSN 208
Query: 119 --------KQERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
K+ + + +T N V++ N+ ++ +DLK++ EYG+I + +D
Sbjct: 209 IASKTEQPKRSYDEINNETSIQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD-- 266
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGK 195
K + F+ F + A A+ NGK
Sbjct: 267 ---KGYAFIKFSKHESATSAILMCNGK 290
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ I +V V + ES + L +IF G + S +MRD G +GFV F ++
Sbjct: 36 IPINANSKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGTHAGYGFVEFVDSTT 95
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A A + ++G+ RE K +QE +G ++ +++ L
Sbjct: 96 ARFAKDNMDGRVVYGREL---KVNWSYTAQQENQGSYK--------------IFVGGLQP 138
Query: 245 SIDDEKLKELFSEFGTITSCKVMR-DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
++D+ L + F +FG +T +V++ +G SKG GFV F E+A A+ MNG+ + +
Sbjct: 139 EVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGR 198
Query: 304 PLYV 307
+ V
Sbjct: 199 NIKV 202
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
++I N+ K+++ L + +G+I ++ D KG+ F++F ESA +AI N
Sbjct: 234 VYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD-----KGYAFIKFSKHESATSAILMCN 288
Query: 103 GMLIN 107
G +IN
Sbjct: 289 GKIIN 293
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 15/284 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+++ NL S+ L + F FG I+ ++ D +G S+G+GFV++ + A AI +
Sbjct: 210 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 269
Query: 101 LNGMLINDK--QVFVGHFLRKQERETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+NG L+ +V V F ++ K T ++V NL S + L +F +G
Sbjct: 270 MNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 329
Query: 158 ITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG---------KA 207
+T+A V +D G SK +GFV + + AA+AV LNG+ D R+ V +
Sbjct: 330 VTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNS 389
Query: 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 267
+S + TV + NLY+ N+ SID +KL ELF FG IT +V+
Sbjct: 390 AVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVV 449
Query: 268 RDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
DP S KG GF+ F+ E A++A+A MNG ++ + + V VA
Sbjct: 450 ADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 493
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 34/337 (10%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGT--------GNIFIKNLDKSIDHKAL 57
SA +A+ +N + + I + + PS S ++I NL +S+ +
Sbjct: 470 SATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKM 529
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F+ FG I + + + V + + SA A+ ++G ++ K++ V
Sbjct: 530 VNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV---- 578
Query: 118 RKQERETVAI---------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168
++ E T + N++V + S T++ +F +G + A + R
Sbjct: 579 KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR--- 635
Query: 169 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 228
+ +G V F+N AA A++ L+G + V A +E Q
Sbjct: 636 --FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNE 693
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 287
+ NLY+ +L +++E+L +LF G IT KV+ + +G+SKG GFV F+
Sbjct: 694 QGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYS 753
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
A+ AL MNG + L V +A + + A F
Sbjct: 754 AAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 790
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 129 bits (323), Expect = 6e-27, Method: Composition-based stats.
Identities = 61/108 (56%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L A AL+ +N+ + + IRI + RDPS RKSG GN+FIKNLDKSID+KAL+DTFS+
Sbjct: 66 LEDAETALNTMNYDTIKGQPIRITWYQRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSA 125
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111
FGNILSCKI D G +G+GFV FE +ESA AI+++NG +++ K+V
Sbjct: 126 FGNILSCKIVCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKKV 172
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIA-TDGSGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS+ G +LS ++ + +S G+ +V F++ E A+ A++
Sbjct: 16 SLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALNT 75
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N I + + + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 76 MNYDTIKGQPIRITWY----QRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 131
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
++ D G + +GFV+FE + A A+E +NG
Sbjct: 132 CKIVCDEHG-FRGYGFVHFEKEESATIAIERVNG 164
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T++ L + F G + S V R +S + +V+F++ +DA A+
Sbjct: 16 SLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALNT 75
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N + + Q+ + G N++IKNL SID++ L
Sbjct: 76 MNYDTIKGQPIRITWYQRDPSPRKSGVG----------------NVFIKNLDKSIDNKAL 119
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
+ FS FG I SCK++ D G +G GFV F E A+ A+ +NG M+ K
Sbjct: 120 YDTFSAFGNILSCKIVCDEHGF-RGYGFVHFEKEESATIAIERVNGTMLHGK 170
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 77/97 (79%), Gaps = 1/97 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 54 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 113
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 103
ILSCK+A D G KG+GFV F+ +ESA+ AID +NG
Sbjct: 114 ILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 61 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 104
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+FS FG I SCKV D G KG GFV F E A RA+ MNG
Sbjct: 105 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A++
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 61 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 116
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
V D G K +GFV+F+ + A +A++A+NG
Sbjct: 117 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S ++ RD + S G +V + P +A RAL
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 295 MNGKMIVSKPLYVAVAQR 312
+N +I +P+ + +QR
Sbjct: 61 LNFDVIKGRPVRIMWSQR 78
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 86/122 (70%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
YV +AQ K+ER LK QF +F G+NLY+KNLG+++DD +LK +F FGTIT
Sbjct: 51 YVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTIT 110
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 322
S KVM D G+S+G GFV FST EEA++A+ +M+ K+I KPLYV + +++E+R RLQ
Sbjct: 111 SVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQ 170
Query: 323 QF 324
++
Sbjct: 171 RY 172
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNL E+ D +LK++F +GTITS VM D G S+ FGFV F ++A KAV +
Sbjct: 84 NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDM 143
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQF 221
+ K + YVG +K+ +R + L+ ++
Sbjct: 144 HLKLIGGKPLYVGMHEKREQRLERLQQRY 172
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNL +++D L F FG I S K+ TD G S+GFGFV F E A A+ +
Sbjct: 84 NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDM 143
Query: 102 NGMLINDKQVFVGHFLRKQER 122
+ LI K ++VG ++++R
Sbjct: 144 HLKLIGGKPLYVGMHEKREQR 164
>gi|147864210|emb|CAN80948.1| hypothetical protein VITISV_016699 [Vitis vinifera]
Length = 183
Score = 127 bits (320), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/74 (79%), Positives = 64/74 (86%)
Query: 8 ARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI 67
ARALDVLNFT LN K RIMYSH DPS+RKSGTGNIFIKNLDK +DHKALHDTFS+FGNI
Sbjct: 73 ARALDVLNFTLLNGKPTRIMYSHCDPSVRKSGTGNIFIKNLDKRVDHKALHDTFSAFGNI 132
Query: 68 LSCKIATDGSGQSK 81
LSCK+A D SG +
Sbjct: 133 LSCKVAADASGSYR 146
Score = 58.5 bits (140), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ + TD L +FG+ G + S + D +S +G VN N D A+A++
Sbjct: 19 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALDV 78
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + +V K N++IKNL +D + L
Sbjct: 79 LNFTLLNGKPTRIMYSH----------------CDPSVRKSGTGNIFIKNLDKRVDHKAL 122
Query: 252 KELFSEFGTITSCKVMRDPSG 272
+ FS FG I SCKV D SG
Sbjct: 123 HDTFSAFGNILSCKVAADASG 143
Score = 52.4 bits (124), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ L+ ++ L D F G ++S +I D + +S +G V N + A+D
Sbjct: 19 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALDV 78
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN L+N K + + + K+ N+F+KNLD+ + L F +G I S
Sbjct: 79 LNFTLLNGKPTRIMY----SHCDPSVRKSGTGNIFIKNLDKRVDHKALHDTFSAFGNILS 134
Query: 161 AVVMRDGDGKSK 172
V D G +
Sbjct: 135 CKVAADASGSYR 146
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 82/102 (80%), Gaps = 1/102 (0%)
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTIT
Sbjct: 2 YVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 61
Query: 263 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 62 SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 102
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 15/98 (15%)
Query: 111 VFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGT 157
++VG +K ER+T +K KF N++VKNLD+ DE L+K F +GT
Sbjct: 1 IYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 59
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
ITSA VM +G G+SK FGFV F + ++A KAV +NG+
Sbjct: 60 ITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 96
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++
Sbjct: 35 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 93
Query: 102 NGMLINDK 109
NG ++ K
Sbjct: 94 NGRIVATK 101
>gi|403331840|gb|EJY64890.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 701
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 167/331 (50%), Gaps = 45/331 (13%)
Query: 29 SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGF 85
+HR+ + N+FIKNLDKSI + L ++FS G+ ++S K++ + S+G+GF
Sbjct: 92 AHRN---NMNKANNLFIKNLDKSITSQQLDESFSKVLGSDVVVSAKVSINADYTSRGYGF 148
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGH-FLRKQERETVAIKTKFNNVFVKNLDESTT 144
V + E A+ A + +D F H F K RE ++ FNN+++KN
Sbjct: 149 VCLSSPELAEQA------LATSDSFKFDVHPFNPKDRRE---LRKTFNNIYIKNFPSIWN 199
Query: 145 DEDLKKIFGEYGTITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNG 194
E +++IFG+YGTI S + G + F FV +E+ D+ A AV N
Sbjct: 200 QEKIEQIFGQYGTIKSTFIKMGKVQGTDQEAPFAFVCYEDPDNKEYGPRCALNAVTQENE 259
Query: 195 KKFDDREWYVGKAQKKSEREQELK---GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
K++D + YV +A K EREQE K +F+ + K NLY+KN ++ +E+L
Sbjct: 260 KEYDGIKLYVKEALPKKEREQEKKREQNRFKNSKKRC-------NLYVKNFPENTTEEQL 312
Query: 252 KELFSEFGTITSCKV-MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
K F ++G I S K+ +++ + + FV + PE A+ A + + + K L++
Sbjct: 313 KAYFEKYGEIESIKLNLKEGAAV---YAFVCYKNPESATYAKQQSQTQTLNGKQLFLNFY 369
Query: 311 QRKEERR-----ARLQAQFSQMRPVAMGPSV 336
++KE R+ AR + F R + G ++
Sbjct: 370 EQKEVRKIQQEDARDRTDFQNHRKQSPGTAL 400
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 38/236 (16%)
Query: 106 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTT----DEDLKKIFGEYGTITSA 161
IN KQ +L++ K NN+F+KNLD+S T DE K+ G + SA
Sbjct: 75 INGKQCRALPYLKEVTAAHRNNMNKANNLFIKNLDKSITSQQLDESFSKVLGS-DVVVSA 133
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V + D S+ +GFV + + A +A+ + KFD V K RE
Sbjct: 134 KVSINADYTSRGYGFVCLSSPELAEQALATSDSFKFD-----VHPFNPKDRRE------- 181
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV-MRDPSGISKGS--G 278
+++T + N+YIKN + EK++++F ++GTI S + M G + +
Sbjct: 182 ---LRKTFN-----NIYIKNFPSIWNQEKIEQIFGQYGTIKSTFIKMGKVQGTDQEAPFA 233
Query: 279 FVAFSTPEE-------ASRALAEMNGKMIVSKPLYVAVAQRKEER---RARLQAQF 324
FV + P+ A A+ + N K LYV A K+ER + R Q +F
Sbjct: 234 FVCYEDPDNKEYGPRCALNAVTQENEKEYDGIKLYVKEALPKKEREQEKKREQNRF 289
>gi|147835778|emb|CAN72942.1| hypothetical protein VITISV_011270 [Vitis vinifera]
Length = 185
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARALDVLNFTPLN K +RIMYSH DPSIRKSGTGNIFIKNLDK IDHKALHDTFS+FGN
Sbjct: 84 AARALDVLNFTPLNGKPLRIMYSHCDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGN 143
Query: 67 ILSCK 71
ILSCK
Sbjct: 144 ILSCK 148
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192
++V +L+ + D L +F + G + S V RD +S +G+VN+ N DAA+A++ L
Sbjct: 32 LYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N + + + + + G N++IKNL ID + L
Sbjct: 92 NFTPLNGKPLRIMYSHCDPSIRKSGTG----------------NIFIKNLDKGIDHKALH 135
Query: 253 ELFSEFGTITSCK 265
+ FS FG I SCK
Sbjct: 136 DTFSAFGNILSCK 148
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAI 98
T ++++ +L+ +++ L+D F+ G ++S ++ D S + S G+G+V + N + A A+
Sbjct: 29 TTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 88
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
D LN +N K + + + + K+ N+F+KNLD+ + L F +G I
Sbjct: 89 DVLNFTPLNGKPLRIMY----SHCDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNI 144
Query: 159 TSA 161
S
Sbjct: 145 LSC 147
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEA 288
++F +LY+ +L +++D +L +LF++ G + S +V RD S S G G+V +S P++A
Sbjct: 25 NQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDA 84
Query: 289 SRALAEMNGKMIVSKPLYVAVAQ 311
+RAL +N + KPL + +
Sbjct: 85 ARALDVLNFTPLNGKPLRIMYSH 107
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 15/226 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIR--KSGTGNIFIKNLDKSIDHKALHDTFSSF 64
A A+ N+T LN ++I I+ P + SG GN+FIK LD+SID LH+ F+++
Sbjct: 64 AETAVRDFNYTKLNGETI-IVTRTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANY 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G I+SC+I T +GQ +GFG+VQF +E A++A+ +L +N K + +G FL++ ER
Sbjct: 123 GEIVSCRIPT-LNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPL 181
Query: 125 VA-----IKTKFNNVFVKNL-DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 178
A + + F NVFVKNL D T L ++F E+G +TSA ++ + + G+V
Sbjct: 182 SAAFQNNLDSSFTNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVM 236
Query: 179 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 224
+ A +AV L G+ + V ++ +ER +K E+
Sbjct: 237 MSEHEAAVRAVVGLCGRTIFGKRLSVCRSLSPAERANFIKKPIEEV 282
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 20/275 (7%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I + NL ++ + L FS G +++ + + + FV F +E A+ A+ N
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVILKQKPTS---CYAFVDFTLQEEAETAVRDFN 72
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
+N + + V R AI + N+F+K LDES L ++F YG I S
Sbjct: 73 YTKLNGETIIVT---RTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCR 129
Query: 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
+ +G+ + FG+V F +DA A++ L + + +G K+SER L F+
Sbjct: 130 I-PTLNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERP--LSAAFQ 186
Query: 223 QAMKETVDKFQGLNLYIKNLGDSIDDE-KLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
+ + N+++KNL D+I+ L LF EFG +TS +++ + + G+V
Sbjct: 187 NNLDSSF-----TNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVM 236
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
S E A RA+ + G+ I K L V + ER
Sbjct: 237 MSEHEAAVRAVVGLCGRTIFGKRLSVCRSLSPAER 271
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
V + K N + V NL + T E LK +F E GT+ + ++ + + C+ FV+F ++
Sbjct: 7 VRFEPKENGIHVANLPPTVTVEFLKSLFSEAGTVINVILKQK---PTSCYAFVDFTLQEE 63
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A AV N K + V + + + QG NL+IK L +
Sbjct: 64 AETAVRDFNYTKLNGETIIVTRTTA--------------PVVSAISSGQG-NLFIKGLDE 108
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
SID +L ELF+ +G I SC++ +G +G G+V F E+A A+ E+ + KP
Sbjct: 109 SIDCLQLHELFANYGEIVSCRIPTL-NGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKP 167
Query: 305 LYVAVAQRKEER 316
+ + ++ ER
Sbjct: 168 IQIGPFLKRSER 179
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 141/262 (53%), Gaps = 28/262 (10%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 100
+I++ LD ++ + L+D F G + S ++ D + Q S G+G+V F++ A+ A+D+
Sbjct: 9 SIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALDQ 68
Query: 101 LNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
L FLR K +R+ ++ NN+ VK L +S LK++FG+YG +
Sbjct: 69 AGAKLGT-------RFLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTFALKEMFGKYGRL 121
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
T+ + D G+S+ + ++FE + A AV+ ++G + D + V + Q + R++ LK
Sbjct: 122 TAIGLACDERGESRGYARISFEREESAVDAVKEMDGMEMDGQAIVVERYQAQ-HRDEMLK 180
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--G 276
Q NLY+KNL ++ D KL+ F+++G ++S KV RD G
Sbjct: 181 --------------QFTNLYVKNLEPTVTDSKLRAFFAKYGEVSSAKV-RDLGDAQSEVG 225
Query: 277 SGFVAFSTPEEASRALAEMNGK 298
G+VAF E+A++A+ E+NGK
Sbjct: 226 FGYVAFEKHEDAAKAVEELNGK 247
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 51/69 (73%)
Query: 481 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 540
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L++L+SP L +
Sbjct: 490 LAAVLANLNPEQQKNVLGERLYSYIVRNHPSVAAKITGMLLEMDNSEILNMLDSPVVLDS 549
Query: 541 KVAEAMEVL 549
K+AEA +VL
Sbjct: 550 KIAEAQDVL 558
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 22/206 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V LD ++ L F G + S V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALDQ 68
Query: 192 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G K R + K Q+ S+R + N+ +K L S+D
Sbjct: 69 A-GAKLGTRFLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKSVDTFA 110
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
LKE+F ++G +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKEMFGKYGRLTAIGLACDERGESRGYARISFEREESAVDAVKEMDGMEMDGQA--IVVE 168
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSV 336
+ + + R + QF+ + + P+V
Sbjct: 169 RYQAQHRDEMLKQFTNLYVKNLEPTV 194
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+++K D ++ + L + F +G +S + TD +G S+ FGFV +++ +A +AI
Sbjct: 289 NLYVKGFDDTVTSERLEELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQD 348
Query: 101 LNG-MLINDKQVFVGHFLRKQER 122
LNG ++ + +FV + LRK R
Sbjct: 349 LNGSTFLSPRPLFVTYALRKDAR 371
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 139/269 (51%), Gaps = 20/269 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++ + + +S+D L FS G+++SCKI D SG G+GFV+F + +A+ A D +
Sbjct: 44 SVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNM 103
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
+G ++ +++ V Q+ K +FV L D+ L K F ++G +T A
Sbjct: 104 DGRVVYGRELKVNWSYTAQQENQGNYK-----IFVGGLQPEVNDDLLYKTFQKFGRVTDA 158
Query: 162 VVMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQE 216
V++ GKSK +GFV F +DA A++ +NG+K + R W K+E+
Sbjct: 159 RVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQP-- 216
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
K +++ ET Q +YI N+ +++ + LK+L +E+G+I ++ +D KG
Sbjct: 217 -KRSYDEINNETSS--QNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD-----KG 268
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPL 305
F+ FS E A+ A+ NGK+I L
Sbjct: 269 YAFIKFSKHESATSAILMCNGKIINGSTL 297
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 23/209 (11%)
Query: 2 FMLSSAAR-ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--IFIKNLDKSIDHKALH 58
F+ S+ AR A D ++ + + +++ +S+ + ++ GN IF+ L ++ L+
Sbjct: 90 FVDSTTARFAKDNMDGRVVYGRELKVNWSY---TAQQENQGNYKIFVGGLQPEVNDDLLY 146
Query: 59 DTFSSFGNILSCKIAT-DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
TF FG + ++ +G+SKG+GFV F KE A+ A+ +NG + + + V
Sbjct: 147 KTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVT 206
Query: 118 RKQERETVAIKTKF---NN--------VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
+T K + NN V++ N+ ++ +DLK++ EYG+I + +D
Sbjct: 207 SNIASKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD 266
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGK 195
K + F+ F + A A+ NGK
Sbjct: 267 -----KGYAFIKFSKHESATSAILMCNGK 290
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 18/176 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+V V + ES + L +IF G + S +MRD G +GFV F ++ A A + +
Sbjct: 44 SVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNM 103
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+G+ RE V + +QE +G ++ +++ L ++D+ L
Sbjct: 104 DGRVVYGRELKVNWSYTA---QQENQGNYK--------------IFVGGLQPEVNDDLLY 146
Query: 253 ELFSEFGTITSCKVMR-DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
+ F +FG +T +V++ +G SKG GFV F E+A A+ MNG+ + + + V
Sbjct: 147 KTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKV 202
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 20/268 (7%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+ + + +S+D L FS G+++SCKI D SG G+GFV+F + +A+ A D ++
Sbjct: 45 VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNMD 104
Query: 103 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162
G ++ +++ V Q+ K +FV L D+ L K F ++G +T A
Sbjct: 105 GRVVYGRELKVNWSYTAQQENQGNYK-----IFVGGLQPEVNDDLLYKTFQKFGRVTDAR 159
Query: 163 VMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQEL 217
V++ GKSK +GFV F +DA A++ +NG+K + R W K+E+
Sbjct: 160 VLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQP--- 216
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
K +++ ET Q +YI N+ +++ + LK+L +E+G+I ++ +D KG
Sbjct: 217 KRSYDEINNETSS--QNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD-----KGY 269
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPL 305
F+ FS E A+ A+ NGK+I L
Sbjct: 270 AFIKFSKHESATSAILMCNGKIINGSTL 297
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 23/209 (11%)
Query: 2 FMLSSAAR-ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--IFIKNLDKSIDHKALH 58
F+ S+ AR A D ++ + + +++ +S+ + ++ GN IF+ L ++ L+
Sbjct: 90 FVDSTTARFAKDNMDGRVVYGRELKVNWSY---TAQQENQGNYKIFVGGLQPEVNDDLLY 146
Query: 59 DTFSSFGNILSCKIAT-DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
TF FG + ++ +G+SKG+GFV F KE A+ A+ +NG + + + V
Sbjct: 147 KTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVT 206
Query: 118 RKQERETVAIKTKF---NN--------VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
+T K + NN V++ N+ ++ +DLK++ EYG+I + +D
Sbjct: 207 SNIASKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD 266
Query: 167 GDGKSKCFGFVNFENADDAAKAVEALNGK 195
K + F+ F + A A+ NGK
Sbjct: 267 -----KGYAFIKFSKHESATSAILMCNGK 290
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
V V + ES + L +IF G + S +MRD G +GFV F ++ A A + ++
Sbjct: 45 VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNMD 104
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253
G+ RE V + +QE +G ++ +++ L ++D+ L +
Sbjct: 105 GRVVYGRELKVNWSYTA---QQENQGNYK--------------IFVGGLQPEVNDDLLYK 147
Query: 254 LFSEFGTITSCKVMR-DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
F +FG +T +V++ +G SKG GFV F E+A A+ MNG+ + + + V
Sbjct: 148 TFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKV 202
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 222 EQAMKETVDKFQGLN-----LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
+Q ET D +N +++ + +S+D+ L +FS G + SCK+MRD SG+ G
Sbjct: 25 QQNSTETTDSSLPINANSKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAG 84
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
GFV F A A M+G+++ + L V
Sbjct: 85 YGFVEFVDSTTARFAKDNMDGRVVYGRELKV 115
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 6/148 (4%)
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+NGK + VG AQK E++ ELK +FEQ +E + ++QG+NLYIKNL D++ DE L
Sbjct: 1 MNGKDISGKVISVGCAQKTVEQQAELKWKFEQLKQERISRYQGVNLYIKNLDDTVGDENL 60
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
++ FS FG+ITS KVM + G SKG GFV FS+P EA +A+ +MNG ++ SKPLYVA+A+
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSP-EAIKAVTKMNGCVMSSKPLYVALAR 118
Query: 312 RKEERRARLQAQFSQM----RPVAMGPS 335
R+ + A L Q Q R + GPS
Sbjct: 119 RRGKGSAYLTDQDMQWVAGKRALPAGPS 146
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 16/133 (12%)
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDED 147
+NG I+ K + VG + E++ +K KF N+++KNLD++ DE+
Sbjct: 1 MNGKDISGKVISVGCAQKTVEQQA-ELKWKFEQLKQERISRYQGVNLYIKNLDDTVGDEN 59
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
L+K F +G+ITSA VM + DG+SK FGFV F ++ +A KAV +NG + YV A
Sbjct: 60 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCF-SSPEAIKAVTKMNGCVMSSKPLYVALA 117
Query: 208 QKKSEREQELKGQ 220
+++ + L Q
Sbjct: 118 RRRGKGSAYLTDQ 130
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N++IKNLD ++ + L FS FG+I S K+ + G+SKGFGFV F + E A A+ K+
Sbjct: 45 NLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPE-AIKAVTKM 102
Query: 102 NGMLINDKQVFVGHFLRK 119
NG +++ K ++V R+
Sbjct: 103 NGCVMSSKPLYVALARRR 120
>gi|159164292|pdb|2DYD|A Chain A, Solution Structure Of The Pabc Domain From Triticum
Aevestium Poly(A)-Binding Protein
Length = 85
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 70/79 (88%)
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
PI AL++ALAN+ PE QR +LGE+LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESP+
Sbjct: 6 PIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPD 65
Query: 537 ALKAKVAEAMEVLRSVAQQ 555
ALKAKVAEAMEVLRS Q
Sbjct: 66 ALKAKVAEAMEVLRSAQQH 84
>gi|123430889|ref|XP_001307992.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889649|gb|EAX95062.1| hypothetical protein TVAG_428650 [Trichomonas vaginalis G3]
Length = 537
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 17/220 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRD-PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
SA +A+ N+T LN I I + ++ ++ KSG GN++++ LD I+ LH+ F ++
Sbjct: 58 SALKAIKEFNYTKLNGSPIVITPTTQEYQNLIKSGEGNLYVRGLDVYIEVSQLHELFQTY 117
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--- 121
G ++SCK+ T G +KG+ +VQF + A+ A +LN +IN K++ V + +K+
Sbjct: 118 GEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYKKKERPQK 177
Query: 122 -------RETVAIKTKFNNVFVKNLDESTTDE-DLKKIFGEYGTITSAVVMRDGDGKSKC 173
R A F N+F++NL + +E DL +F E+G + S ++ DG
Sbjct: 178 TSPASNPRGAPASDDVFTNIFIRNLPSNVRNETDLGNLFSEFGVVISTKMLPDG-----F 232
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
GF N + D A +A++ALNGK D + V +A K ER
Sbjct: 233 SGFCNMIDHDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 131/284 (46%), Gaps = 14/284 (4%)
Query: 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 93
S +S + I NL I + G +++ + Q+ F FV F+ ES
Sbjct: 2 SFEQSSDKVVHISNLPSGITTDFIKILLQECGEVVNVTLKER---QNGNFAFVTFDTPES 58
Query: 94 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
A AI + N +N + + QE + + IK+ N++V+ LD L ++F
Sbjct: 59 ALKAIKEFNYTKLNGSPIVITP--TTQEYQNL-IKSGEGNLYVRGLDVYIEVSQLHELFQ 115
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213
YG + S + DG +K + +V F + +DA KA LN + ++ V +KK
Sbjct: 116 TYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYKKKERP 175
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK-LKELFSEFGTITSCKVMRDPSG 272
++ + + D F N++I+NL ++ +E L LFSEFG + S K++ P G
Sbjct: 176 QKTSPASNPRGAPASDDVF--TNIFIRNLPSNVRNETDLGNLFSEFGVVISTKML--PDG 231
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
SGF + A RA+ +NGK+I K L V A KEER
Sbjct: 232 F---SGFCNMIDHDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
NLY+KNL DSIDD +LK+ F FG ITS KVM D + SKG GFV FS PEEA++A+ EM
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
NGK+ SKPLYVA+AQRKE+R+A L +Q+ Q
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQ 91
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNLD+S D LK+ F +G ITSA VM D + +SK FGFV F N ++A KAV +
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
NGK + YV AQ+K +R+ L Q+ Q
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQ 91
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD SID L F FGNI S K+ TD + +SKGFGFV F N E A A+ ++
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 102 NGMLINDKQVFVGHFLRKQERE 123
NG + K ++V RK++R+
Sbjct: 61 NGKICGSKPLYVALAQRKEDRK 82
>gi|402697279|gb|AFQ90827.1| polyA-binding protein cytoplasmic 1, partial [Chrysemys picta]
Length = 127
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 86/126 (68%), Gaps = 3/126 (2%)
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
NILS K+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 126 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
A +F NV++KN E DE LK++FG S VM D GKSK FGFV+FE +
Sbjct: 60 LGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFGFVSFERHE 119
Query: 184 DAAKAV 189
DA KAV
Sbjct: 120 DAQKAV 125
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 84/138 (60%), Gaps = 11/138 (7%)
Query: 157 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE E
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 217 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 276
L + ++ N+YIKN G+ +DDE+LKELF S KVM D SG SKG
Sbjct: 60 LGARAKEFT----------NVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKG 109
Query: 277 SGFVAFSTPEEASRALAE 294
GFV+F E+A +A+AE
Sbjct: 110 FGFVSFERHEDAQKAVAE 127
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 6 SAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHD 59
+A RA++ +N LN++ + + R+ + R N++IKN + +D + L +
Sbjct: 27 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 86
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 98
F LS K+ TD SG+SKGFGFV FE E AQ A+
Sbjct: 87 LFGXXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 125
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 260 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
I S KV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V + ++ER A
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 320 LQAQFSQMRPVAM 332
L A+ + V +
Sbjct: 60 LGARAKEFTNVYI 72
>gi|403340349|gb|EJY69458.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 590
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 142/542 (26%), Positives = 236/542 (43%), Gaps = 85/542 (15%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGFVQFENKESAQNA 97
N+ ++NLDKSI + L + F+ FG+ +LS K++ + S+G+GFV F + A+ A
Sbjct: 101 NNLKVQNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGFVLFACPQLAEQA 160
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+ K + F Q ++ ++ FNN+++ N + E +++IFG+YGT
Sbjct: 161 LAKASE--------FNFEISPHQPKDRRELRKTFNNIYINNFPSNWNKEKIEQIFGQYGT 212
Query: 158 ITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGKA 207
I S +M G + F FV +E+ ++ A A+ + K++D + YV A
Sbjct: 213 IKSTAIMMGKVQGTDEEALFAFVCYEDPNNKEYGHKCALNAILQEDDKEYDGVKLYVEDA 272
Query: 208 QKKSEREQEL---KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
K+ REQE + +F+ K NL+IKN ++ E+LK F ++G I S
Sbjct: 273 FTKTLREQEKYREQNRFKYYKKRC-------NLHIKNFPENTTVEQLKAYFEKYGEIESI 325
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR-----AR 319
K + G++ FV + +PE A+ A + + + K L++ ++KE R+ AR
Sbjct: 326 K-LNHKDGVA-VYAFVCYKSPESAAFAKQQSQTQTLNGKQLFLNFYEQKEVRKIQQEDAR 383
Query: 320 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 379
+ F +R + ++ M P F Q L+
Sbjct: 384 DRTDFQNLRKQSPTSALNIDMLNRP-----------------------ETFQLLQYLMIT 420
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGGRR---GAGPVQQTQQPLPIMPHQMPPRGHAYRY 436
++ QG Q+ G R+ G QQ Q LP QMPP R
Sbjct: 421 IQRQQQNQRY--NNPQRQGGNMQQRGPRQQYNNQGGYQQRNQQLP--QGQMPPMNQQMRQ 476
Query: 437 PLGRNMQDFPFDMGAGSMLPV----PVDMGAGIPRRDASVGQP--MPITALSTALANASP 490
P P M + M + P M +P + Q I L +AL +P
Sbjct: 477 PQQ------PVIMPSQVMPALAQVAPSAMNQNLPPHILTYNQNGMSKIFPLVSAL---NP 527
Query: 491 EQQRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549
++ +GE +Y VE+L D A K+TGML+++ E+ + LK K+ EA +L
Sbjct: 528 N-YKSQVGEFIYEHVEELAGEDLAPKITGMLIDLPIVEIQAYVTDFMKLKIKINEASTLL 586
Query: 550 RS 551
+S
Sbjct: 587 KS 588
>gi|296081049|emb|CBI18330.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 122 bits (306), Expect = 5e-25, Method: Composition-based stats.
Identities = 56/75 (74%), Positives = 60/75 (80%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALDVLNFT LN K RIMYSH DPS+RKSGT NIFIKNLDK +DHKAL DTFS+FGNI
Sbjct: 71 RALDVLNFTHLNGKPTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIF 130
Query: 69 SCKIATDGSGQSKGF 83
SCK+A D SG G
Sbjct: 131 SCKVAADASGSYSGL 145
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ + TD L +FG+ G + S + D +S +G VN N D +A++
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + + + +V K N++IKNL +D + L
Sbjct: 76 LNFTHLNGKPTRIMYSH----------------CDPSVRKSGTRNIFIKNLDKRVDHKAL 119
Query: 252 KELFSEFGTITSCKVMRDPSGISKG 276
++ FS FG I SCKV D SG G
Sbjct: 120 RDTFSTFGNIFSCKVAADASGSYSG 144
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
++++ L+ ++ L D F G ++S +I D + +S +G V N + A+D
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN +N K + + + K+ N+F+KNLD+ + L+ F +G I S
Sbjct: 76 LNFTHLNGKPTRIMY----SHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIFS 131
Query: 161 AVVMRDGDG 169
V D G
Sbjct: 132 CKVAADASG 140
>gi|47026849|gb|AAT08650.1| poly(A)-binding protein [Hyacinthus orientalis]
Length = 126
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 87/101 (86%), Gaps = 2/101 (1%)
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
Q PI AL++ALANASPE QR +LGE+LYPLV QLE + AAKVTGMLLEMDQTEVLHLLE
Sbjct: 25 QQQPIIALASALANASPEHQRMMLGENLYPLVAQLETEHAAKVTGMLLEMDQTEVLHLLE 84
Query: 534 SPEALKAKVAEAMEVLRSVAQQQ--ANNPADQLASLSLNEN 572
SPE+L+ KVAEAMEVLR+VAQQQ +N +QL+SL+LN++
Sbjct: 85 SPESLRGKVAEAMEVLRNVAQQQHASNALHNQLSSLALNDD 125
>gi|449302198|gb|EMC98207.1| hypothetical protein BAUCODRAFT_416441 [Baudoinia compniacensis
UAMH 10762]
Length = 479
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 175/420 (41%), Gaps = 79/420 (18%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGF--GFVQFENKESAQNAIDK 100
+++ LD + L F + G++ S KI D + QSKG+ GFV++++ + A+ A+
Sbjct: 84 LYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPQCAERAMQT 143
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG ++ +++ V + F+ +FV +L DE L + F +GT++
Sbjct: 144 LNGRRVHQQEIRVNWAYQSNTISKEDTSNHFH-IFVGDLSNEVNDEVLLQAFSAFGTVSE 202
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQ 215
A VM D G+S+ +GFV+F + DA KA+ +++G+ R W K Q + Q
Sbjct: 203 ARVMWDMKTGRSRGYGFVSFRDRGDAEKALSSMDGEWLGSRAIRCNWANQKGQPSYSQAQ 262
Query: 216 EL--------------------KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+ FE +++T ++Q Y+ NL L LF
Sbjct: 263 AMVQMGMTPTTPYGHHTFPTQGAQSFEMIVQQT-PQWQ-TTCYVGNLTPYTTQNDLVPLF 320
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FG +T + D +G FV T E A+ A+ +++G + +PL + + +
Sbjct: 321 QNFGYVTETRFHSD-----RGFAFVKMDTHENAANAICQLSGYNVNGRPLKCSWGKDRPP 375
Query: 316 RRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ 375
QF P PP+ +PP P Q YGQ P + PP +GF
Sbjct: 376 T-----GQFDGYSP------APPQS-AFPPTPQTYFPQ--YGQ-PNPMSPPPSGF----- 415
Query: 376 LVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP-IMPHQMPPRGHAY 434
AP PN PGG + QT QP P P MPP Y
Sbjct: 416 ---------APHPN--------------PGGWASSQMTPQTMQPPPGSWPTAMPPSAGGY 452
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 43/232 (18%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSS 63
A RA+ LN ++ + IR+ ++++ +I K T N IF+ +L ++ + L FS+
Sbjct: 137 AERAMQTLNGRRVHQQEIRVNWAYQSNTISKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA 196
Query: 64 FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV--------- 113
FG + ++ D +G+S+G+GFV F ++ A+ A+ ++G + + +
Sbjct: 197 FGTVSEARVMWDMKTGRSRGYGFVSFRDRGDAEKALSSMDGEWLGSRAIRCNWANQKGQP 256
Query: 114 -------------------GHFL----RKQERETVAIKTK--FNNVFVKNLDESTTDEDL 148
GH Q E + +T +V NL TT DL
Sbjct: 257 SYSQAQAMVQMGMTPTTPYGHHTFPTQGAQSFEMIVQQTPQWQTTCYVGNLTPYTTQNDL 316
Query: 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
+F +G +T D + F FV + ++AA A+ L+G + R
Sbjct: 317 VPLFQNFGYVTETRFHSD-----RGFAFVKMDTHENAANAICQLSGYNVNGR 363
>gi|302408078|ref|XP_003001874.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
gi|261359595|gb|EEY22023.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
Length = 555
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 137/514 (26%), Positives = 211/514 (41%), Gaps = 122/514 (23%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ T+ L ++F G + S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 121
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 122 LNYTVINGRPCRIMWSQRDPALRKNGQG----------------NVFIKNLDVAIDNKAL 165
Query: 252 KELFSEFGTITSCK-----------------VMRDPS----------------------G 272
+ SE K V ++ S G
Sbjct: 166 HDTISEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLG 225
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS-----QM 327
SKG GFV FS PE+A++A+A+MN +MI +KPLYVA+AQRK+ R+ +L+ +M
Sbjct: 226 KSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQSIQARNQMRM 285
Query: 328 RPVAMGPSVPPRM---PMYPPG---------------PSGLGQQFLYGQAP---PAIIPP 366
+ A +P + P+Y PG P +G + G P PA P
Sbjct: 286 QSAAAQAGMPNQFMQQPVYFPGQQPGFLPQGGRGMPFPPNMGMPNIQGGRPGQYPAGFPQ 345
Query: 367 QAGFGYQQQLVPGMR-----------PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
Q G G QQL P M PA A P F + Q QQ +
Sbjct: 346 QGGRGIPQQLPPNMYGVPGQFPPGGFPAQANNPQFMA-AMQQVQQAS----------MGG 394
Query: 416 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFD-----------MGAGSMLPVPVDMGAG 464
+ P Q P G P+G +P + G P G G
Sbjct: 395 GRGQGGRGPMQGMPAG-----PMGPGAPGYPPNRQQPGQAGGRGGRNGQQGNFPPQGGRG 449
Query: 465 IPRRDASVGQPMPITALSTALANAS-PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 523
P + P ++A+ L NA+ QQ+ ++GE ++P + + + A K+TGMLLEM
Sbjct: 450 APGAGENT-PPQGLSAIQLQLNNATDARQQKQIIGELIFPKIAAQQPELAGKITGMLLEM 508
Query: 524 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+ +E++ L+E A+K KV EA+ V + Q
Sbjct: 509 ENSELITLIEDDNAMKLKVDEALGVYEEYVKNQG 542
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 79/159 (49%), Gaps = 39/159 (24%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S +AL+ LN+T +N + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDT S
Sbjct: 113 SDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTISEG 172
Query: 65 GNILSCKIA----------------------TDGS-----------------GQSKGFGF 85
+ K TD G+SKGFGF
Sbjct: 173 EDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFGF 232
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
V F N E A A+ +N +I++K ++V RK R+
Sbjct: 233 VCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKN 271
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 48/227 (21%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ L+ + L + FS G + S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE---- 154
++LN +IN + + +R+ K NVF+KNLD + ++ L E
Sbjct: 120 EELNYTVINGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTISEGEDE 175
Query: 155 --------------YGTITSAVVMRDGD---------------------GKSKCFGFVNF 179
+ V D + GKSK FGFV F
Sbjct: 176 DKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFGFVCF 235
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
N +DA KAV +N + D++ YV AQ+K R K Q EQ+++
Sbjct: 236 SNPEDATKAVADMNQRMIDNKPLYVALAQRKDVR----KNQLEQSIQ 278
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 147/290 (50%), Gaps = 28/290 (9%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+++ NL S+ L + F FG I+ K+A + +G SKG+GFV++++ SA AI++
Sbjct: 205 NLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINR 264
Query: 101 LNGMLINDK--QVFVGHFLRKQERETV----------AIKTKFNNVFVKNLDESTTDEDL 148
+NG L++ K +V V ++ + + ++++V+NL S T E+L
Sbjct: 265 MNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEEL 324
Query: 149 KKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALN-----GKKFDDREW 202
+ F +G I A V RD G +K +GFV + N+ +AA A+ LN GKK + R
Sbjct: 325 LQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVRVS 384
Query: 203 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262
V A S E + + + NLY+ N+ SID +KL E+F FG IT
Sbjct: 385 GVSPALSNSAVESHTDARL-------IKEIDMANLYVCNIPTSIDTKKLIEIFLPFGKIT 437
Query: 263 SCKVMRDPSGIS-KGS-GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+V S KG GFV F+ + A+ A+ M+G ++ + L V VA
Sbjct: 438 HARVAAHQGTYSGKGRYGFVKFADSQCAAEAITLMDGALVEGETLVVRVA 487
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 26/280 (9%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
+++++NL S+ + L F FG I+ K+ D +G +KG+GFV++ N A NAI
Sbjct: 309 SLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIH 368
Query: 101 LNGMLINDKQVFV----------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
LNG L+ K++ V + + + N++V N+ S + L +
Sbjct: 369 LNGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIE 428
Query: 151 IFGEYGTITSA-VVMRDG--DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207
IF +G IT A V G GK + +GFV F ++ AA+A+ ++G + V A
Sbjct: 429 IFLPFGKITHARVAAHQGTYSGKGR-YGFVKFADSQCAAEAITLMDGALVEGETLVVRVA 487
Query: 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 267
S E ++K + +YI NL S + + + +LF FG I+ +
Sbjct: 488 GLSSSASSPAVHGLPIPSPE-INKSR---IYITNLPRSTNADMMVKLFVPFGQISKVVMN 543
Query: 268 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
+ S V ++ A +A+ M+G MI K L V
Sbjct: 544 LEYS-------LVYYADVASAVKAIKHMDGYMIGGKRLVV 576
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 136/333 (40%), Gaps = 41/333 (12%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P I KS I+I NL +S + + F FG I + + + V + +
Sbjct: 506 PEINKS---RIYITNLPRSTNADMMVKLFVPFGQISKVVMNLE-------YSLVYYADVA 555
Query: 93 SAQNAIDKLNGMLINDKQVFV-----------GHFLRKQERETVAIKTKFNNVFVKNLDE 141
SA AI ++G +I K++ V GH + + V + NVFV +
Sbjct: 556 SAVKAIKHMDGYMIGGKRLVVRRSDSCPTDAAGHTSTQSLGKEVK-EIDMANVFVGRIPS 614
Query: 142 STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
+ + L ++F +G I V + + +G F + AA A++ +NG +
Sbjct: 615 TVNGDQLVELFRPFGQIVQVRVF-----QHQGYGMFRFNDPFSAAAAIDHMNGYQIGGSA 669
Query: 202 WYVGKAQ-----KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
V A S +LK Q +D NLY+ +L I EKL E+F
Sbjct: 670 LVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDM---ANLYVCHLPLYITTEKLIEIFL 726
Query: 257 EFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA----Q 311
G IT +V+ D +GISKG GFV F+ A+ AL MNG + L V +A
Sbjct: 727 PCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILEVRIAGVHPS 786
Query: 312 RKEERRARLQAQFSQMRPVAMGPSVPPR-MPMY 343
+L +QF+ P M +P P Y
Sbjct: 787 DMGSYMTQLYSQFTYPDPSTMVVGIPTSYWPYY 819
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 9/116 (7%)
Query: 196 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+FDD++ ++GK Q+ + + G+ ++ VD NLY+ NL S+ KL ELF
Sbjct: 173 QFDDQDKHLGKRQEHTLPLSQEGGKLKE-----VDN---TNLYVGNLPASVGSHKLIELF 224
Query: 256 SEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
FG I KV + +G+SKG GFV + P A+ A+ MNG+++ K L V VA
Sbjct: 225 LPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRMNGRLVDGKILEVRVA 280
>gi|403352466|gb|EJY75748.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 678
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 152/307 (49%), Gaps = 34/307 (11%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGFVQFENKESAQNA 97
N+FIKNLDKSI + L + F+ FG +LS K++ + S+G+GFV + A+ A
Sbjct: 101 NNLFIKNLDKSITSQQLDEIFAKVFGEDAVLSAKVSVNADYSSRGYGFVCLACPQLAEQA 160
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+ K + F H ++R ++ FN +++KN + E +++IFG+YGT
Sbjct: 161 LAKASEF------KFEVHPYHPEDRR--ELRKSFNYIYIKNFPINWNKEKIEQIFGKYGT 212
Query: 158 ITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGKA 207
I S V+M G + F FV +E+ ++ A A+ N K++D + V
Sbjct: 213 IKSTVIMMGIVQGTDEEAPFAFVCYEDPENKEYGPKCAQNAITQENDKEYDGVKLKVKDG 272
Query: 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV- 266
KS REQE E+ ++ + NLY+KN D +E+LK F ++G I S K+
Sbjct: 273 LPKSIREQEK----EREQNRFINSKKRCNLYVKNFPDDTTEEQLKAYFEKYGQIESIKLN 328
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR-----ARLQ 321
++ + + FV + +PE A A + + + K L++ ++KE R+ AR +
Sbjct: 329 YKEGAAV---YAFVCYKSPESAIYAKQQSQTQTLNGKQLFLNYYEQKEVRKIQQEDARDR 385
Query: 322 AQFSQMR 328
F +R
Sbjct: 386 TDFQNLR 392
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 41/186 (22%)
Query: 130 KFNNVFVKNLDESTT----DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 185
K NN+F+KNLD+S T DE K+FGE + SA V + D S+ +GFV A
Sbjct: 99 KRNNLFIKNLDKSITSQQLDEIFAKVFGE-DAVLSAKVSVNADYSSRGYGFVCLACPQLA 157
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+A+ + KF+ ++ E +EL+ F +YIKN +
Sbjct: 158 EQALAKASEFKFEVHPYH-------PEDRRELRKSFNY-------------IYIKNFPIN 197
Query: 246 IDDEKLKELFSEFGTITSCKVMRDPSGISKGS------GFVAFSTPEE-------ASRAL 292
+ EK++++F ++GTI S +M GI +G+ FV + PE A A+
Sbjct: 198 WNKEKIEQIFGKYGTIKSTVIM---MGIVQGTDEEAPFAFVCYEDPENKEYGPKCAQNAI 254
Query: 293 AEMNGK 298
+ N K
Sbjct: 255 TQENDK 260
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 75/90 (83%), Gaps = 1/90 (1%)
Query: 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 288
+ ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA
Sbjct: 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEA 68
Query: 289 SRALAEMNGKMIVSKPLYVAVAQRKEERRA 318
++A+ EMNG+++ +KPLYVA+AQRKEER++
Sbjct: 69 TKAVTEMNGRIVATKPLYVALAQRKEERQS 98
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +
Sbjct: 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 75
Query: 193 NGKKFDDREWYVGKAQKKSERE 214
NG+ + YV AQ+K ER+
Sbjct: 76 NGRIVATKPLYVALAQRKEERQ 97
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++
Sbjct: 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 75
Query: 102 NGMLINDKQVFVGHFLRKQERET 124
NG ++ K ++V RK+ER++
Sbjct: 76 NGRIVATKPLYVALAQRKEERQS 98
>gi|440293224|gb|ELP86367.1| polyadenylate-binding protein, putative [Entamoeba invadens IP1]
Length = 519
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 149/298 (50%), Gaps = 18/298 (6%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A +A++ +N ++ K++ + +S +D R N+F+KN+ K++ K + D F +FG
Sbjct: 68 AAKKAIETMNGALIDGKTVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFG 127
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
I+S K++ + +G S GFG+V++ E+A A++ N I K + K E++T
Sbjct: 128 EIISVKLSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQT- 184
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS------AVVMRDGDGKSKCFGFVNF 179
K K N++V N+D+S +E K F +G + V+ D GFV+F
Sbjct: 185 --KNKKTNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFACDDKHPTAMGFVDF 242
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
EN +DA KA+ A E V +SER + + + K++ N+YI
Sbjct: 243 ENEEDAQKALTAPKNNVLGQGEIKVDYYMSRSERSRVWLQKSLEIKSNIQGKYKDFNMYI 302
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVM---RDPSGISKGSGFVAFSTPEEASRALAE 294
L + D +++ F++ G I S +V + P+ I+ FV F++ E ++A+ +
Sbjct: 303 NTLKEPTSDAEIRSAFADCGEIYSVRVKYYEKVPTSIA----FVCFTSQEAFNKAMTK 356
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 116/525 (22%), Positives = 205/525 (39%), Gaps = 84/525 (16%)
Query: 43 IFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
IF+ +L K++ L+ S+ F + ++ + +V E+A+ AI+ +
Sbjct: 17 IFVSSLSKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAYVNMNTHEAAKKAIETM 76
Query: 102 NGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
NG LI+ K V + L+ KQ ET N+FVKN+ ++ + ++++ +F +G I
Sbjct: 77 NGALIDGKTVNMFWSLKDFKQRTETQT------NLFVKNIKKTVSQKEMQDVFMTFGEII 130
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 219
S + + +G S FG+V + + A KAVE + + K + +
Sbjct: 131 SVKLSVNENGASNGFGYVKYRTIEAALKAVEN------------AAEIKAKIGEDNFIVA 178
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-----------TITSCKVMR 268
+FE+ K + NLY+ N+ S+++E+ + F FG + +C +
Sbjct: 179 KFEKQTKN-----KKTNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFACDD-K 232
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER-RARLQAQFSQM 327
P+ + GFV F E+A +AL ++ + V + ER R LQ
Sbjct: 233 HPTAM----GFVDFENEEDAQKALTAPKNNVLGQGEIKVDYYMSRSERSRVWLQ------ 282
Query: 328 RPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQL--VPGMRPAGA 385
+ + + ++ + + + L + P + ++ F ++ V
Sbjct: 283 KSLEIKSNIQGKYKDFNMYINTLKE-------PTSDAEIRSAFADCGEIYSVRVKYYEKV 335
Query: 386 PMPNFFVPVVSQG--QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----YRYPLG 439
P FV SQ + G G + + M +QM G+A Y PL
Sbjct: 336 PTSIAFVCFTSQEAFNKAMTKGEELGWKVCKFMNRQEKFMTNQMYQMGNAFPLNYMTPL- 394
Query: 440 RNMQDFPFDMGA-----GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANAS----- 489
Q F MGA PV G PR + S
Sbjct: 395 --FQMFGAQMGAFFQQQQQQQRRPV--GPKKPRVERSEKIEKKKYEQKKEEKKPEPKKEI 450
Query: 490 --PEQQRTLLGESLYPLVEQLER---DAAAKVTGMLLEMDQTEVL 529
+ R LGE +Y VE L++ + ++TG+LLE + VL
Sbjct: 451 EVTDNMRNDLGEKIYTFVENLKKYDEEMIGRITGILLESIEYSVL 495
>gi|94733636|emb|CAK04114.1| novel protein (zgc:56258) [Danio rerio]
Length = 865
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 148/315 (46%), Gaps = 48/315 (15%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F++ L ++ ++ L + FS G + +C + D + +GFG+V F ++ AQ A+ ++
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVK 65
Query: 103 GMLINDKQVFV-------------------------------GHFLRKQERETVAIKTKF 131
L +D+++FV G +E + K +
Sbjct: 66 --LYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKKKEN 123
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ ++NL D++LK+IF ++GT+ + DGK K F FV F+ +A KA A
Sbjct: 124 GWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAA 183
Query: 192 LNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-------LYIK 240
+N K DR +W + + E + E+ + +KF+G+ L I+
Sbjct: 184 MNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRLIIR 241
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +++ LK++FSEFGT+ K+ P G +G FV F EA +AL MNGK I
Sbjct: 242 NLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKI 301
Query: 301 VSKPLYV--AVAQRK 313
+ + V A+A+ K
Sbjct: 302 KDRQVAVDWAIAKDK 316
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Query: 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ 95
+K G + I+NL + L FS FG +L +I G+ KGF FVQF+ A+
Sbjct: 119 KKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAE 178
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQER------------ETVAIKTKFNNV--------- 134
A +N I D+ V V E E KF +
Sbjct: 179 KARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRL 238
Query: 135 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
++NL ++DLK+IF E+GT+ A + DGK + F FV F+ +A KA+ A+NG
Sbjct: 239 IIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNG 298
Query: 195 KKFDDR----EWYVGK 206
KK DR +W + K
Sbjct: 299 KKIKDRQVAVDWAIAK 314
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
+ L+++ L ++ +E L E+FSE G + +C V+ D +G G+V FS ++A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 294 EMNGKMIVSKPLYVAVA 310
E+ K+ + ++V VA
Sbjct: 63 EV--KLYDDQKIFVTVA 77
>gi|331243001|ref|XP_003334145.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313135|gb|EFP89726.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 111/213 (52%), Gaps = 10/213 (4%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
A+ N T K R+M R ++ N+F+++L ++ A HDTF+ FG ILS
Sbjct: 86 AIREYNHTKFAGKPCRVMKPKRG-IVKGPPEANVFVQDLPLALSALAFHDTFAEFGEILS 144
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN----DKQVFVGHFLRK---QER 122
+++ D SKG+GF+Q+ E AQ AI + NG L++ +K + F++K
Sbjct: 145 SRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLDVAGGEKPIRTSIFVKKDAPSSP 204
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+ A +F N+F KNL T E K + +YG ITSAV+ D DGK F +F+N
Sbjct: 205 TSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAFASFQNH 264
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
DA + ++A K D E Y +A K+ER +
Sbjct: 265 SDAVRVIKATQRKGPD--EVYAVRALSKAERTR 295
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 14/254 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIA--TDGSGQSKGFGFVQFENKESAQNAID 99
++++ +L +I + L FS +LS +I + + + ++ + + + AI
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYSSADKVDEAIR 88
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ N F G R + + +K NVFV++L + + F E+G I
Sbjct: 89 EYNHTK------FAGKPCRVMKPKRGIVKGPPEANVFVQDLPLALSALAFHDTFAEFGEI 142
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S+ + D + SK +GF+ + + A A+ NG D V +K +K
Sbjct: 143 LSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLD-----VAGGEKPIRTSIFVK 197
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ + NL+ KNL I E K +S++G ITS + D G G+
Sbjct: 198 KDAPSSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTA 257
Query: 279 FVAFSTPEEASRAL 292
F +F +A R +
Sbjct: 258 FASFQNHSDAVRVI 271
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 86/172 (50%), Gaps = 21/172 (12%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM---RDGDGKSKCFGFVNFENADDAAKA 188
++V+V +L + T+E+L K+F + + S + R G + + ++ + +AD +A
Sbjct: 28 HSVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGP-RAYAYIAYSSADKVDEA 86
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
+ N KF + V K ++ +KG E N+++++L ++
Sbjct: 87 IREYNHTKFAGKPCRVMKPKRGI-----VKGPPEA------------NVFVQDLPLALSA 129
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
+ F+EFG I S ++ D +SKG GF+ ++T E+A A+AE NG ++
Sbjct: 130 LAFHDTFAEFGEILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLL 181
>gi|41053419|ref|NP_956615.1| RNA-binding protein 28 [Danio rerio]
gi|30353878|gb|AAH51781.1| Zgc:56258 [Danio rerio]
Length = 864
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 152/315 (48%), Gaps = 48/315 (15%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+F++ L ++ ++ L + FS G + +C + D + +GFG+V F ++ AQ A+ ++
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVK 65
Query: 103 GMLINDKQVFV----------------------GHFLRKQE----RETVAI----KTKFN 132
L +D+++FV G Q+ + T I K K N
Sbjct: 66 --LYDDQKIFVTVAKKKLDDRKRKKNAKTNKDSGDTEESQKSGETKNTEKIPSPTKKKEN 123
Query: 133 N-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+ + ++NL D++LK+IF ++GT+ + DGK K F FV F+ +A KA A
Sbjct: 124 SWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAA 183
Query: 192 LNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-------LYIK 240
+N K DR +W + + E + E+ + +KF+G+ L I+
Sbjct: 184 MNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRLIIR 241
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL +++ LK++FSEFGT+ K+ P G +G FV F EA +AL MNGK I
Sbjct: 242 NLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKI 301
Query: 301 VSKPLYV--AVAQRK 313
+ + V A+A+ K
Sbjct: 302 KDRQVAVDWAIAKDK 316
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 95/216 (43%), Gaps = 26/216 (12%)
Query: 17 TPLNNKSIRIMYSHRDPS-IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 75
T + KS + + PS +K + I+NL + L FS FG +L +I
Sbjct: 99 TEESQKSGETKNTEKIPSPTKKKENSWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLK 158
Query: 76 GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER------------E 123
G+ KGF FVQF+ A+ A +N I D+ V V E E
Sbjct: 159 PDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAE 218
Query: 124 TVAIKTKFNNV---------FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 174
KF + ++NL ++DLK+IF E+GT+ A + DGK + F
Sbjct: 219 ETTSTEKFKGIRKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGF 278
Query: 175 GFVNFENADDAAKAVEALNGKKFDDR----EWYVGK 206
FV F+ +A KA+ A+NGKK DR +W + K
Sbjct: 279 AFVLFKRMPEAGKALTAMNGKKIKDRQVAVDWAIAK 314
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
+ L+++ L ++ +E L E+FSE G + +C V+ D +G G+V FS ++A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 294 EMNGKMIVSKPLYVAVA 310
E+ K+ + ++V VA
Sbjct: 63 EV--KLYDDQKIFVTVA 77
>gi|440293231|gb|ELP86374.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 538
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 149/298 (50%), Gaps = 21/298 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A +A++ +N ++ K + + +S +D R N+F+KN+ K++ K + D F +FG
Sbjct: 66 AAKKAIETMNGALIDGKPVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFG 125
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
I+S K++ + +G S GFG+V++ E+A A++ N I K + K E++T
Sbjct: 126 EIISVKLSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQT- 182
Query: 126 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS------AVVMRDGDGKSKCFGFVNF 179
K K N++V N+D+S +E K F +G + V+ D GFV+F
Sbjct: 183 --KNKKTNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFASKDEYPTAMGFVDF 240
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
EN +DA KA+ A E V K ER++E + + + M K++ N+Y+
Sbjct: 241 ENEEDAQKALTAPKNNVLGQGEIKVVYYMSKKERKREYQLKNNEIMASIKGKYKEFNMYV 300
Query: 240 KNLGD---SIDDEKLKELFSEFGTITSCKVM---RDPSGISKGSGFVAFSTPEEASRA 291
K D S D +++ F++ G I S ++ + P+ ++ +V F++ E +A
Sbjct: 301 KTSNDSEHSTSDAEIRSAFADCGEIYSIRIKYFNKSPTDVA----YVCFTSQEGYDKA 354
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 84/174 (48%), Gaps = 28/174 (16%)
Query: 134 VFVKNLDESTTDEDL-KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
VFV L ++ T+ L K+I ++ + ++V + + +VN + A KA+E +
Sbjct: 15 VFVSGLTKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAYVNMNTHEAAKKAIETM 74
Query: 193 NGKKFDDRE----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 248
NG D + W + ++++E + NL++KN+ ++
Sbjct: 75 NGALIDGKPVNMFWSLKDFKQRTETQ--------------------TNLFVKNIKKTVSQ 114
Query: 249 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL---AEMNGKM 299
++++++F FG I S K+ + +G S G G+V + T E A +A+ AE+ K+
Sbjct: 115 KEMQDVFMTFGEIISVKLSVNENGASNGFGYVKYRTIEAALKAVENAAEIKAKI 168
>gi|357156104|ref|XP_003577343.1| PREDICTED: nucleolysin TIAR-like [Brachypodium distachyon]
Length = 451
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 132/288 (45%), Gaps = 31/288 (10%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P S ++++ N+ + LH+ F S G + CK+ + FGFV + ++
Sbjct: 69 PGFDSSTCRSVYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRK---EKSSFGFVDYYDRR 125
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
SA AI LNG + + + V +RE + N+FV +L TD L F
Sbjct: 126 SAALAIVSLNGRQLFGQPIKVNWAYASTQREDT---SGHFNIFVGDLCPEVTDAALFAFF 182
Query: 153 GEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKA 207
Y T + A VM D G+S+ FGFV+F N DA A+ LNGK +R+ W A
Sbjct: 183 SAYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINELNGKWLGNRQIRCNWATKGA 242
Query: 208 QKKSEREQ-ELKGQFE------QAMKETVDKF------QGLNLYIKNLGDSIDDEKLKEL 254
E++ + KG E +A KE ++ Q +Y+ NL I+ +
Sbjct: 243 NAGEEKQNTDSKGMVELINGSSEAGKENANEDGPENNPQYTTVYVGNLPHDINSNDVHRF 302
Query: 255 FSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
F G+I +V RD KG GFV +ST EEA+ A+ NG+++
Sbjct: 303 FHLLGAGSIEEVRVTRD-----KGFGFVRYSTHEEAALAIQTGNGQLV 345
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIR-KSGTGNIFIKNLDKSIDHKALHDTFSSF 64
SAA A+ LN L + I++ +++ SG NIF+ +L + AL FS++
Sbjct: 126 SAALAIVSLNGRQLFGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFSAY 185
Query: 65 GNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR----- 118
++ D +G+S+GFGFV F N++ AQ AI++LNG + ++Q+ +
Sbjct: 186 STCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINELNGKWLGNRQIRCNWATKGANAG 245
Query: 119 --KQERETVAI----------------------KTKFNNVFVKNLDESTTDEDLKKIFGE 154
KQ ++ + ++ V+V NL D+ + F
Sbjct: 246 EEKQNTDSKGMVELINGSSEAGKENANEDGPENNPQYTTVYVGNLPHDINSNDVHRFFHL 305
Query: 155 Y--GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
G+I V RD K FGFV + ++AA A++ NG+ R+
Sbjct: 306 LGAGSIEEVRVTRD-----KGFGFVRYSTHEEAALAIQTGNGQLVGGRQ 349
>gi|414884858|tpg|DAA60872.1| TPA: putative AP2/EREBP transcription factor superfamily protein
[Zea mays]
Length = 1012
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 81/124 (65%), Gaps = 18/124 (14%)
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTD 145
+ FE ESAQ+AIDKL G+ E KF+NV+VKNL ++ T+
Sbjct: 247 IIFEMDESAQSAIDKLYGL------------------ENAWNSIKFSNVYVKNLSDTVTN 288
Query: 146 EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 205
++LK++F +YGTITS VVMRD G S+CF FV FEN + AA+AV+ LNGK F+D+E YVG
Sbjct: 289 DELKEMFEKYGTITSDVVMRDNVGNSRCFAFVIFENVEVAAQAVQELNGKIFNDKELYVG 348
Query: 206 KAQK 209
+ Q+
Sbjct: 349 RVQQ 352
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 10/103 (9%)
Query: 220 QFEQAMKETVDKFQGL----------NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ +++ + +DK GL N+Y+KNL D++ +++LKE+F ++GTITS VMRD
Sbjct: 250 EMDESAQSAIDKLYGLENAWNSIKFSNVYVKNLSDTVTNDELKEMFEKYGTITSDVVMRD 309
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
G S+ FV F E A++A+ E+NGK+ K LYV Q+
Sbjct: 310 NVGNSRCFAFVIFENVEVAAQAVQELNGKIFNDKELYVGRVQQ 352
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100
N+++KNL ++ + L + F +G I S + D G S+ F FV FEN E A A+ +
Sbjct: 275 SNVYVKNLSDTVTNDELKEMFEKYGTITSDVVMRDNVGNSRCFAFVIFENVEVAAQAVQE 334
Query: 101 LNGMLINDKQVFVG 114
LNG + NDK+++VG
Sbjct: 335 LNGKIFNDKELYVG 348
>gi|440297981|gb|ELP90622.1| nucleolysin TIA-1, putative [Entamoeba invadens IP1]
Length = 305
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 134/257 (52%), Gaps = 10/257 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++ + L +S+D L FS G+++SCKI D +G +GF++F + +A+ A + +
Sbjct: 40 SVHVAGLHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYGFIEFIDHTTAEFAKENM 99
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
NG L+ K++ V Q + K +FV L T+E L + F ++G ++ A
Sbjct: 100 NGRLVYGKELKVNWTHDSQSDAKGSFK-----LFVGGLHTEVTNEILYQNFAKFGRVSDA 154
Query: 162 VVMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
V+R GKS+ +GFV F +DA A++ +NG+K R V + + +K
Sbjct: 155 RVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKVNWGTATQKPTETVKRG 214
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
F++ +ET + N+Y+ + ++ +++LF +FG I K+MR + K GFV
Sbjct: 215 FDEISRETSN--TNNNVYVGGIPKETEESTMRKLFGDFGEIIDLKIMRTDA--EKAYGFV 270
Query: 281 AFSTPEEASRALAEMNG 297
F + + A++A+ +NG
Sbjct: 271 RFVSHDNATKAIMMLNG 287
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 16/206 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
++A A + +N + K +++ ++H S K G+ +F+ L + ++ L+ F+ F
Sbjct: 90 TTAEFAKENMNGRLVYGKELKVNWTHDSQSDAK-GSFKLFVGGLHTEVTNEILYQNFAKF 148
Query: 65 GNILSCKIA-TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
G + ++ SG+S+G+GFV F KE A+ A+ +NG I + V V ++ ++
Sbjct: 149 GRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKV-NWGTATQKP 207
Query: 124 TVAIKTKF-----------NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK 172
T +K F NNV+V + + T + ++K+FG++G I +MR K
Sbjct: 208 TETVKRGFDEISRETSNTNNNVYVGGIPKETEESTMRKLFGDFGEIIDLKIMR--TDAEK 265
Query: 173 CFGFVNFENADDAAKAVEALNGKKFD 198
+GFV F + D+A KA+ LNG + +
Sbjct: 266 AYGFVRFVSHDNATKAIMMLNGYQLN 291
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
+V V L ES + L +IF G + S +M+D G +GF+ F + A A E +
Sbjct: 40 SVHVAGLHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYGFIEFIDHTTAEFAKENM 99
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
NG+ +E K + + + KG F+ L++ L + +E L
Sbjct: 100 NGRLVYGKEL---KVNWTHDSQSDAKGSFK--------------LFVGGLHTEVTNEILY 142
Query: 253 ELFSEFGTITSCKVMR-DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
+ F++FG ++ +V+R SG S+G GFV F E+A A+ MNG+ I + + V
Sbjct: 143 QNFAKFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKV 198
>gi|403336206|gb|EJY67291.1| Polyadenylate-binding protein [Oxytricha trifallax]
Length = 494
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 34/315 (10%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGFVQFENKESAQNA 97
N+ ++NLDKSI + L + F+ FG+ +LS K++ + S+G+G V F + A+ A
Sbjct: 5 NNLKVQNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGQVIFACPQLAEQA 64
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
+ K + + K RE ++ FNN+++KN + E +++IFG+YGT
Sbjct: 65 LAKAGEFNFQ-----ISPYQPKDRRE---LRKSFNNIYIKNFPSNWNKEQIEQIFGKYGT 116
Query: 158 ITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGKA 207
I S V+M G + F FV +E+ ++ A A+ N +++D + YV A
Sbjct: 117 IKSTVIMMGIVQGTDEEAPFAFVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKAA 176
Query: 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV- 266
+ REQE K EQ + K G NLY+KN D +E+L+ F +G I S K+
Sbjct: 177 LPMTLREQEKK--IEQNRFKNYKK--GCNLYVKNFPDDTTEEQLQAYFENYGEIESIKLN 232
Query: 267 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER-----RARLQ 321
+D + FV + PE A+ A + + K L++ ++KE R AR +
Sbjct: 233 HKDGKAV---YAFVCYKDPESAAFAKQQSQTETFHGKQLFINFYEQKEVRLIQQEDARDR 289
Query: 322 AQFSQMRPVAMGPSV 336
F+ +R ++ ++
Sbjct: 290 TDFTNLRKQSLASAL 304
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 20/204 (9%)
Query: 28 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI---ATDGSGQSKGFG 84
Y +D + NI+IKN + + + + F +G I S I G+ + F
Sbjct: 78 YQPKDRRELRKSFNNIYIKNFPSNWNKEQIEQIFGKYGTIKSTVIMMGIVQGTDEEAPFA 137
Query: 85 FVQF---ENKE----SAQNAIDKLNGMLINDKQVFVG----HFLRKQERETVAIK----T 129
FV + ENKE AQNAI N + +++V LR+QE++ +
Sbjct: 138 FVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKAALPMTLREQEKKIEQNRFKNYK 197
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
K N++VKN + TT+E L+ F YG I S + + DGK+ + FV +++ + AA A
Sbjct: 198 KGCNLYVKNFPDDTTEEQLQAYFENYGEIES-IKLNHKDGKA-VYAFVCYKDPESAAFAK 255
Query: 190 EALNGKKFDDREWYVGKAQKKSER 213
+ + F ++ ++ ++K R
Sbjct: 256 QQSQTETFHGKQLFINFYEQKEVR 279
>gi|66821129|ref|XP_644081.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
gi|60472201|gb|EAL70154.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
Length = 904
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 122/236 (51%), Gaps = 34/236 (14%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
NVFVK+L DEDL+ +F +YG + S+ VM D G S +GFV F + ++A A+E L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+G ++ +++ L + K+ NL+IK L + D++L+
Sbjct: 170 DGYQYQNKK---------------LLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLR 214
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK---PLYVAV 309
+LF FG I CKVM D +G SK +GFV FS+ +AS+A+ MNG I PL V
Sbjct: 215 KLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKY 274
Query: 310 AQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 365
A ++++ +R Q +M+ + + P P++PP QFL P ++P
Sbjct: 275 ADTEQQKISRKQR---KMQTIYQEKIIAP--PIFPP-------QFL----QPTVLP 314
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 7/164 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+F+K+L + + L + FS +G +LS K+ D G S G+GFV+F + + + AI++L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKF--NNVFVKNLDESTTDEDLKKIFGEYGTIT 159
+G +K++ L + + +K+ NN+F+K L TD+ L+K+F +G I
Sbjct: 170 DGYQYQNKKL-----LCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKII 224
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203
VM D +G+SK GFV F + DA+KA++A+NG + + Y
Sbjct: 225 ECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGY 268
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL++ +L +DD L +LFS+FG + S +V+ D +G +KG GFV F +EA + E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 295 MNGKMIVSKPLYVAVAQRKE 314
MNG I SK L V + KE
Sbjct: 830 MNGFRIGSKFLKVKLKNEKE 849
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESA 94
+ + N+F+ +L +D L FS FG + S ++ TD +G++KG+GFV+F + A
Sbjct: 764 KHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEA 823
Query: 95 QNAIDKLNGMLINDKQVFVGHFLR---KQERETV 125
++NG I K FL+ K E+E++
Sbjct: 824 LKCQKEMNGFRIGSK------FLKVKLKNEKESM 851
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 191
N+FV +L D L ++F ++G + S V+ D D G++K +GFV F D+A K +
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 192 LNGKKFDDREWYVGKAQKKSERE 214
+NG + + K + K+E+E
Sbjct: 830 MNGFRIGSK---FLKVKLKNEKE 849
>gi|361067029|gb|AEW07826.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
gi|376335371|gb|AFB32375.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
gi|376335373|gb|AFB32376.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
gi|376335375|gb|AFB32377.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
gi|376335377|gb|AFB32378.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
gi|376335379|gb|AFB32379.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
Length = 103
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 4/103 (3%)
Query: 294 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMY--PPGPSGL 350
EMNGKM+ KPLYVA+AQRKEERRARLQAQF+QMR P+ + P++P + Y P P
Sbjct: 1 EMNGKMVGRKPLYVALAQRKEERRARLQAQFAQMRAPITVTPALPTNLSAYHHPGAPRLA 60
Query: 351 GQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV 392
QQ YGQ P +IPPQ AGFGYQQQL+PG+RP A MPNF +
Sbjct: 61 PQQLFYGQGPHGLIPPQAAGFGYQQQLLPGIRPGMAQMPNFLL 103
>gi|403353256|gb|EJY76164.1| Polyadenylate-binding protein [Oxytricha trifallax]
Length = 680
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 150/308 (48%), Gaps = 34/308 (11%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGFVQFENKESAQN 96
T + +KNLDKSI + L + F+ FG +LS K++ + S G G V F + A+
Sbjct: 102 TNVLLVKNLDKSITSQQLDEIFAKVFGEDAVLSAKVSVNADYSSNGHGQVIFACPQLAEQ 161
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+ K + + K RE ++ FNN+++KN + E +++IFG+YG
Sbjct: 162 ALAKAGEFNFQ-----ISPYQPKDRRE---LRKSFNNIYIKNFPSNWNKEQIEQIFGKYG 213
Query: 157 TITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGK 206
TI S V+M G + F FV +E+ ++ A A+ N +++D + YV
Sbjct: 214 TIKSTVIMMGIVQGTDEEAPFAFVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKA 273
Query: 207 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
A + REQE K EQ + K G NLY+KN D +E+L+ F +G I S K+
Sbjct: 274 ALPMTLREQEKK--IEQNRFKNYKK--GCNLYVKNFPDDTTEEQLQAYFENYGEIESIKL 329
Query: 267 -MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR-----ARL 320
+D + FV + PE A+ A + + K L+++ ++KE R+ AR
Sbjct: 330 NHKDGKAV---YAFVCYKDPESAAFAKQQSQTETFHGKQLFISFYEQKEVRKIQQEDARD 386
Query: 321 QAQFSQMR 328
+ F+ +R
Sbjct: 387 RTDFANLR 394
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 28 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI---ATDGSGQSKGFG 84
Y +D + NI+IKN + + + + F +G I S I G+ + F
Sbjct: 176 YQPKDRRELRKSFNNIYIKNFPSNWNKEQIEQIFGKYGTIKSTVIMMGIVQGTDEEAPFA 235
Query: 85 FVQF---ENKE----SAQNAIDKLNGMLINDKQVFVG----HFLRKQERETVAIK----T 129
FV + ENKE AQNAI N + +++V LR+QE++ +
Sbjct: 236 FVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKAALPMTLREQEKKIEQNRFKNYK 295
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
K N++VKN + TT+E L+ F YG I S + + DGK+ + FV +++ + AA A
Sbjct: 296 KGCNLYVKNFPDDTTEEQLQAYFENYGEIES-IKLNHKDGKA-VYAFVCYKDPESAAFAK 353
Query: 190 EALNGKKFDDREWYVGKAQKKSERE 214
+ + F ++ ++ ++K R+
Sbjct: 354 QQSQTETFHGKQLFISFYEQKEVRK 378
>gi|83853826|gb|ABC47858.1| poly(A)-binding protein [Glycine max]
Length = 74
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 67/74 (90%)
Query: 502 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
YPLV++LE + AAKVTGMLLEMDQ EVLHL+ESP+ALKAKV EAM+VLR V QQQ+N+PA
Sbjct: 1 YPLVDKLEHETAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRKVTQQQSNSPA 60
Query: 562 DQLASLSLNENLVS 575
DQLASLSLN+N+ S
Sbjct: 61 DQLASLSLNDNVES 74
>gi|388494114|gb|AFK35123.1| unknown [Medicago truncatula]
Length = 425
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 137/282 (48%), Gaps = 9/282 (3%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCK-IATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++I +L +D LH F+S G I S K I SG S+G+GF +F + +A+ +
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 102 NGMLI-NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YGTIT 159
G+L+ N Q F ++ + + ++FV +L TD L + F Y ++
Sbjct: 159 AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVK 218
Query: 160 SAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
+A V+ D + G+SK +GFV F + + ++A+ +NG R +G A + +
Sbjct: 219 AAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPG 278
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
GQ ++ +++ L ++ DE LK+ FS++G I S K+ + KG G
Sbjct: 279 GQTNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIP-----VGKGCG 333
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320
FV F+ A AL ++NG MI + + ++ + ++ RL
Sbjct: 334 FVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRL 375
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 19/167 (11%)
Query: 42 NIFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
+IF+ +L + LH+TF SS+ ++ + K+ D +G+SKG+GFV+F ++ A+
Sbjct: 191 SIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMT 250
Query: 100 KLNGMLINDKQVFV---------GHFLRKQERETVA---IKTKFNNVFVKNLDESTTDED 147
++NG+ + + + + GH Q T + + +FV LD + TDED
Sbjct: 251 QMNGVYCSSRPMRIGAATPRKSSGHQPGGQTNGTSSQSEADSTNTTIFVGGLDSNVTDED 310
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
LK+ F +YG I S V + G G C GFV F N ++A +A++ LNG
Sbjct: 311 LKQTFSQYGEIAS-VKIPVGKG---C-GFVQFANRNNAEEALQKLNG 352
>gi|361067031|gb|AEW07827.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
gi|376335381|gb|AFB32380.1| hypothetical protein 0_12329_02, partial [Pinus mugo]
gi|376335383|gb|AFB32381.1| hypothetical protein 0_12329_02, partial [Pinus mugo]
gi|383170822|gb|AFG68672.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
gi|383170823|gb|AFG68673.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
gi|383170824|gb|AFG68674.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
Length = 103
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 4/103 (3%)
Query: 294 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMY--PPGPSGL 350
EMNGKM+ KPLYVA+AQRKEERRARLQAQF+QMR P+ + P++P + Y P P
Sbjct: 1 EMNGKMVGRKPLYVALAQRKEERRARLQAQFAQMRAPITVTPALPTSLSAYHHPGAPRLA 60
Query: 351 GQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV 392
QQ YGQ P +IPPQ AGFGYQQQL+PG+RP A MPNF +
Sbjct: 61 PQQLFYGQGPHGLIPPQPAGFGYQQQLLPGIRPGMAQMPNFLL 103
>gi|14571727|emb|CAC42820.1| Poly(A)-binding protein cytoplasmic 5 [Mus musculus]
Length = 119
Score = 115 bits (289), Expect = 5e-23, Method: Composition-based stats.
Identities = 55/109 (50%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDK+ID++AL FS+F
Sbjct: 12 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAF 71
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+V
Sbjct: 72 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNRQVYV 119
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 233
+G+VNF DA A+ +N + + + + +Q + G
Sbjct: 3 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVG-------------- 48
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
N++IKNL +ID+ L LFS FG I SCKV+ D +G SKG +V F + A+RA+
Sbjct: 49 --NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 105
Query: 294 EMNGKMIVSKPLYV 307
+NG + ++ +YV
Sbjct: 106 HVNGVRLNNRQVYV 119
Score = 62.4 bits (150), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 82 GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDE 141
G+G+V F A+ A++ +N LIN K + Q + + K+ N+F+KNLD+
Sbjct: 2 GYGYVNFRFPADAEWALNTMNFDLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDK 57
Query: 142 STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201
+ + L +F +G I S V+ D +G SK + +V+F++ A +A+ +NG + ++R+
Sbjct: 58 TIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNRQ 116
Query: 202 WYV 204
YV
Sbjct: 117 VYV 119
>gi|147770378|emb|CAN78155.1| hypothetical protein VITISV_032623 [Vitis vinifera]
Length = 602
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 504 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 563
L+ QLE + AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM+VLR+VAQQQAN+P +Q
Sbjct: 531 LLPQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQ 590
Query: 564 LASLSLNENLV 574
LASLSLN++LV
Sbjct: 591 LASLSLNDSLV 601
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 50/54 (92%)
Query: 513 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 566
AAK+TGMLLEM QTE LHLLESPEALK+KVAEAM+VLR+VAQQQAN+P QL+S
Sbjct: 2 AAKLTGMLLEMGQTEFLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTXQLSS 55
>gi|376335365|gb|AFB32372.1| hypothetical protein 0_12329_02, partial [Abies alba]
gi|376335367|gb|AFB32373.1| hypothetical protein 0_12329_02, partial [Abies alba]
gi|376335369|gb|AFB32374.1| hypothetical protein 0_12329_02, partial [Abies alba]
Length = 102
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 76/102 (74%), Gaps = 3/102 (2%)
Query: 294 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLG- 351
EMNGKM+ KPLYVA+AQRKEERRARLQAQF+QMR P+ + P++P + Y PG L
Sbjct: 1 EMNGKMVGRKPLYVALAQRKEERRARLQAQFAQMRAPIGVTPALPISLSAYHPGAPRLAP 60
Query: 352 QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV 392
QQ YGQ P +IPPQ AGFGYQQQL+PG+RP A PNF +
Sbjct: 61 QQLFYGQGPHGLIPPQPAGFGYQQQLLPGIRPGMAXXPNFLL 102
>gi|403372966|gb|EJY86395.1| Polyadenylate-binding protein [Oxytricha trifallax]
Length = 592
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 34/316 (10%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGFVQFENKESAQN 96
T + +KNLDKSI + L + F+ FG +LS K++ + S G G V F + A+
Sbjct: 102 TNVLLVKNLDKSITSQQLDEIFAKVFGEDAVLSAKVSVNADYSSNGHGQVIFACPQLAEQ 161
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+ K + + K RE ++ FNN+++KN + E +++IFG+YG
Sbjct: 162 ALAKAGEFNFQ-----ISPYQPKDRRE---LRKSFNNIYIKNFPSNWNKEQIEQIFGKYG 213
Query: 157 TITSAVVMR---DGDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGK 206
TI S V+M G + F FV +E+ ++ A A+ N +++D + YV
Sbjct: 214 TIKSTVIMMGIVQGTDEEAPFAFVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKA 273
Query: 207 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
A + REQE K EQ + K G NLY+KN D +E+L+ F +G I S K+
Sbjct: 274 ALPMTLREQEKK--IEQNRFKNYKK--GCNLYVKNFPDDTTEEQLQAYFENYGEIESIKL 329
Query: 267 -MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER-----RARL 320
+D + FV + PE A+ A + + K L++ ++KE R AR
Sbjct: 330 NHKDGKAV---YAFVCYKDPESAAFAKQQSQTETFHGKQLFINFYEQKEVRLIQQEDARD 386
Query: 321 QAQFSQMRPVAMGPSV 336
+ F+ +R ++ ++
Sbjct: 387 RTDFTNLRKQSLASAL 402
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 20/204 (9%)
Query: 28 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI---ATDGSGQSKGFG 84
Y +D + NI+IKN + + + + F +G I S I G+ + F
Sbjct: 176 YQPKDRRELRKSFNNIYIKNFPSNWNKEQIEQIFGKYGTIKSTVIMMGIVQGTDEEAPFA 235
Query: 85 FVQF---ENKE----SAQNAIDKLNGMLINDKQVFVG----HFLRKQERETVAIK----T 129
FV + ENKE AQNAI N + +++V LR+QE++ +
Sbjct: 236 FVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKAALPMTLREQEKKIEQNRFKNYK 295
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
K N++VKN + TT+E L+ F YG I S + + DGK+ + FV +++ + AA A
Sbjct: 296 KGCNLYVKNFPDDTTEEQLQAYFENYGEIES-IKLNHKDGKA-VYAFVCYKDPESAAFAK 353
Query: 190 EALNGKKFDDREWYVGKAQKKSER 213
+ + F ++ ++ ++K R
Sbjct: 354 QQSQTETFHGKQLFINFYEQKEVR 377
>gi|409083337|gb|EKM83694.1| hypothetical protein AGABI1DRAFT_110331 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 444
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 158/375 (42%), Gaps = 47/375 (12%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG--FGFVQFENKESAQNAID 99
++++ NL + L + F+ G + KI D + Q G +GFV++ + SA+ A+
Sbjct: 17 HLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMRSAETALQ 76
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LNG I D ++ V + Q+ + + +VFV +L D+ L K F +GT++
Sbjct: 77 TLNGRKIFDTEIRVNWAYQGQQNKE--DTSGHYHVFVGDLSPEVNDDVLAKAFSAFGTLS 134
Query: 160 SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
A VM D GKS+ +GF+ F + DA +A+ +NG+ R V A +K++
Sbjct: 135 DARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWANQKTQGGAPAV 194
Query: 219 GQFEQAMKETVD-----KFQG----------------LNLYIKNLGDSIDDEKLKELFSE 257
Q + T FQG +Y+ NL L LF
Sbjct: 195 QQSPRPAGSTGGAPAPINFQGGPLSYESVVQQTPAYNTTVYVGNLVPYCTQADLIPLFQS 254
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
G ++ ++ D +G FV T E A+ A+ ++ G+M+ +P+ + + + +
Sbjct: 255 IGYLSEIRMQAD-----RGFAFVKLDTHEHAAMAIVQLQGQMVHGRPIKCSWGKDRADGT 309
Query: 318 ARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ 373
A Q P AM P+ MPMY G+ Q YGQ P G
Sbjct: 310 AAAQ-------PAAMSPTTTATPYASMPMY-----GMPQPNTYGQYGFGAYPGFPGQAAG 357
Query: 374 QQLVPGMRPAGAPMP 388
Q PG G P P
Sbjct: 358 QPGAPGATSPGMPQP 372
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 41/233 (17%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRK--SGTGNIFIKNLDKSIDHKALHDTF 61
+ SA AL LN + + IR+ ++++ ++ SG ++F+ +L ++ L F
Sbjct: 68 MRSAETALQTLNGRKIFDTEIRVNWAYQGQQNKEDTSGHYHVFVGDLSPEVNDDVLAKAF 127
Query: 62 SSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
S+FG + ++ D SG+S+G+GF+ F +K A+ AI +NG + + + V +K
Sbjct: 128 SAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWANQKT 187
Query: 121 E-------------------------------RETVAIKTKFNN--VFVKNLDESTTDED 147
+ E+V +T N V+V NL T D
Sbjct: 188 QGGAPAVQQSPRPAGSTGGAPAPINFQGGPLSYESVVQQTPAYNTTVYVGNLVPYCTQAD 247
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
L +F G ++ + D + F FV + + AA A+ L G+ R
Sbjct: 248 LIPLFQSIGYLSEIRMQAD-----RGFAFVKLDTHEHAAMAIVQLQGQMVHGR 295
>gi|403355351|gb|EJY77251.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 712
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 148/300 (49%), Gaps = 37/300 (12%)
Query: 9 RALDVLNFTPLNNKSIRIM-YS-----------HRDPSIRK--SGTGNIFIKNLDK-SID 53
+ L +LN+ + +K R++ YS H S K +F+K +
Sbjct: 28 KCLQILNYPRIKDKCCRVLRYSIKLAKSQQFQDHHASSAAKFFPTDSQLFVKGFKPLNWT 87
Query: 54 HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
H+ L F FG ++S K++ D + QSKG+G+VQF K +A A++ +NG ++ V
Sbjct: 88 HEDLTMNFKQFGEVVSAKVSIDANHQSKGYGYVQFSQKSNALKAMEMMNGKTFGNEIVLS 147
Query: 114 GHFLRKQERETVAIKTKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSK 172
+ + K + NN++VKN TD++L YG + +A +M+D G +K
Sbjct: 148 VKLYNSSLVKEKSKKVQ-NNLYVKNFPTLDFTDQEL-----HYGPLINAQIMKDSQGNTK 201
Query: 173 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 232
FGFV F++A+DA KA++ ++ + YV +AQ K ER EL+ + K T+ +
Sbjct: 202 GFGFVCFQSAEDAQKALQDISSTT----QIYVTEAQSKEERMSELQRKNLSFKKSTMYQ- 256
Query: 233 QGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 291
NLY+K + I D+ LK F +G + + K+ S G+ +V F E A +A
Sbjct: 257 ---NLYVKGFDKNIITDDLLKIHFEAYGEVKNAKI------TSNGTAYVCFFDRESARKA 307
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 34/251 (13%)
Query: 83 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF---LRKQER---ETVAIKTKF----N 132
F +V F+++E + LN I DK V + L K ++ + KF +
Sbjct: 15 FAYVCFKSQEHVDKCLQILNYPRIKDKCCRVLRYSIKLAKSQQFQDHHASSAAKFFPTDS 74
Query: 133 NVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
+FVK + T EDL F ++G + SA V D + +SK +G+V F +A KA+E
Sbjct: 75 QLFVKGFKPLNWTHEDLTMNFKQFGEVVSAKVSIDANHQSKGYGYVQFSQKSNALKAMEM 134
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD-SIDDEK 250
+NGK F + K S +KE K Q NLY+KN D++
Sbjct: 135 MNGKTFGNEIVLSVKLYNSS------------LVKEKSKKVQN-NLYVKNFPTLDFTDQE 181
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
L +G + + ++M+D G +KG GFV F + E+A +AL +++ + +YV A
Sbjct: 182 L-----HYGPLINAQIMKDSQGNTKGFGFVCFQSAEDAQKALQDISS----TTQIYVTEA 232
Query: 311 QRKEERRARLQ 321
Q KEER + LQ
Sbjct: 233 QSKEERMSELQ 243
>gi|426201609|gb|EKV51532.1| hypothetical protein AGABI2DRAFT_189771 [Agaricus bisporus var.
bisporus H97]
Length = 469
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 158/375 (42%), Gaps = 47/375 (12%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG--FGFVQFENKESAQNAID 99
++++ NL + L + F+ G + KI D + Q G +GFV++ + SA+ A+
Sbjct: 17 HLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMRSAETALQ 76
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LNG I D ++ V + Q+ + + +VFV +L D+ L K F +GT++
Sbjct: 77 TLNGRKIFDTEIRVNWAYQGQQNKE--DTSGHYHVFVGDLSPEVNDDVLAKAFSAFGTLS 134
Query: 160 SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
A VM D GKS+ +GF+ F + DA +A+ +NG+ R V A +K++
Sbjct: 135 DARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWANQKTQGGAPAV 194
Query: 219 GQFEQAMKETVD-----KFQG----------------LNLYIKNLGDSIDDEKLKELFSE 257
Q + T FQG +Y+ NL L LF
Sbjct: 195 QQSPRPAGSTGGAPAPINFQGGPLSYESVVQQTPAYNTTVYVGNLVPYCTQADLIPLFQS 254
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
G ++ ++ D +G FV T E A+ A+ ++ G+M+ +P+ + + + +
Sbjct: 255 IGYLSEIRMQAD-----RGFAFVKLDTHEHAAMAIVQLQGQMVHGRPIKCSWGKDRADGT 309
Query: 318 ARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ 373
A Q P AM P+ MPMY G+ Q YGQ P G
Sbjct: 310 AAAQ-------PAAMSPTTTATPYASMPMY-----GMPQPNTYGQYGFGAYPGFPGQAAG 357
Query: 374 QQLVPGMRPAGAPMP 388
Q PG G P P
Sbjct: 358 QPGAPGATSPGMPQP 372
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 41/233 (17%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRK--SGTGNIFIKNLDKSIDHKALHDTF 61
+ SA AL LN + + IR+ ++++ ++ SG ++F+ +L ++ L F
Sbjct: 68 MRSAETALQTLNGRKIFDTEIRVNWAYQGQQNKEDTSGHYHVFVGDLSPEVNDDVLAKAF 127
Query: 62 SSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
S+FG + ++ D SG+S+G+GF+ F +K A+ AI +NG + + + V +K
Sbjct: 128 SAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWANQKT 187
Query: 121 E-------------------------------RETVAIKTKFNN--VFVKNLDESTTDED 147
+ E+V +T N V+V NL T D
Sbjct: 188 QGGAPAVQQSPRPAGSTGGAPAPINFQGGPLSYESVVQQTPAYNTTVYVGNLVPYCTQAD 247
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
L +F G ++ + D + F FV + + AA A+ L G+ R
Sbjct: 248 LIPLFQSIGYLSEIRMQAD-----RGFAFVKLDTHEHAAMAIVQLQGQMVHGR 295
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N+FVK+L TDEDL K+F YG + S+ VM D G S +GFV F N +++ A++ L
Sbjct: 95 NIFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNESQAAIKEL 154
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+G +F +++ L + K NL+IK L + DE+L+
Sbjct: 155 DGFQFQNKK---------------LLCRLSNLYTNLNSKNPSNNLFIKPLPADVTDEQLR 199
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAVA 310
+LF +G I CKVM D +G SK +GFV F EA+ A+ MNG I S PL V A
Sbjct: 200 KLFEPYGKIVECKVMLDQNGQSKFAGFVRFFNDSEAASAIDAMNGIKITKDSYPLVVKYA 259
Query: 311 QRKEERRARLQ 321
++++ R Q
Sbjct: 260 DTEQQKVVRKQ 270
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 107/198 (54%), Gaps = 11/198 (5%)
Query: 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
I + + NIF+K+L + L FS++GN++S K+ D G S G+GFV+F N +
Sbjct: 88 ILEKDSTNIFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNES 147
Query: 95 QNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDESTTDEDLKKIFG 153
Q AI +L+G +K++ R T + K NN+F+K L TDE L+K+F
Sbjct: 148 QAAIKELDGFQFQNKKLLC----RLSNLYTNLNSKNPSNNLFIKPLPADVTDEQLRKLFE 203
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-----YVGKAQ 208
YG I VM D +G+SK GFV F N +AA A++A+NG K + Y Q
Sbjct: 204 PYGKIVECKVMLDQNGQSKFAGFVRFFNDSEAASAIDAMNGIKITKDSYPLVVKYADTEQ 263
Query: 209 KKSEREQ-ELKGQFEQAM 225
+K R+Q +L+ F++ +
Sbjct: 264 QKVVRKQRKLQTIFQEKI 281
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
NL++ +L IDD L +LFS++G + S +V+ D +G +KG GFV F E+A + E
Sbjct: 512 NLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQKE 571
Query: 295 MNGKMIVSKPLYVAV 309
MNG I SK L V +
Sbjct: 572 MNGFRIGSKYLKVKL 586
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 100
N+F+ +L ID L FS +G + S ++ TD +G++KG+GFV+F N+E A +
Sbjct: 512 NLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQKE 571
Query: 101 LNGMLINDKQVFV 113
+NG I K + V
Sbjct: 572 MNGFRIGSKYLKV 584
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 191
N+FV +L D L ++F +YG + S V+ D D G++K +GFV F N +DA K +
Sbjct: 512 NLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQKE 571
Query: 192 LNG 194
+NG
Sbjct: 572 MNG 574
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 15/279 (5%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
+++ NL + L + FS+ G + KI D +G S G+GFVQF + +A A+ L
Sbjct: 24 LYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQSL 83
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
NG +++ +++ V +K +RE A ++F +FV +L D+ L + F G +
Sbjct: 84 NGRVLHGQELRVNWAFQKDQREDSA--SQF-QIFVGDLASDINDKLLCEAFQSCGCADAR 140
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V+ G+SK +GFV+F+ DA +A+ ++G R G AQ K E Q
Sbjct: 141 VMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQHKQENSQASFAAV 200
Query: 222 EQAMKETVDKFQG----LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
++ T+ + Q N+Y+ NL + D +L+ S+FG + K+ R G
Sbjct: 201 DRV--STLSRAQADPENANVYVGNLAPDVSDAELQTAVSQFGAVLDVKIYR-----KGGY 253
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
F F++ +A RA+ ++G+ + K L + + + +
Sbjct: 254 AFAQFASHADAVRAIVGLSGQNLGGKALKCSWGRHQARK 292
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 21/200 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V NL TD L++IF G + +++D G S +GFV F + A A+++L
Sbjct: 24 LYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQSL 83
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
NG+ +E V A +K +RE ++ +FQ +++ +L I+D+ L
Sbjct: 84 NGRVLHGQELRVNWAFQKDQRE------------DSASQFQ---IFVGDLASDINDKLLC 128
Query: 253 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E F G + +VM D +G SKG GFV+F T +A +AL++M+G M+ S+ + AQ
Sbjct: 129 EAFQSCGCADA-RVMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQ 187
Query: 312 RKEERRARLQAQFSQMRPVA 331
K+E QA F+ + V+
Sbjct: 188 HKQENS---QASFAAVDRVS 204
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYS-HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+A AL LN L+ + +R+ ++ +D + IF+ +L I+ K L + F S
Sbjct: 75 AADMALQSLNGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASDINDKLLCEAFQSC 134
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G + + +G+SKG+GFV F+ + A+ A+ +++G ++ +++ G KQE
Sbjct: 135 GCADARVMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQHKQENSQ 194
Query: 125 VAIKT--------------KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 170
+ + NV+V NL +D +L+ ++G + + R G
Sbjct: 195 ASFAAVDRVSTLSRAQADPENANVYVGNLAPDVSDAELQTAVSQFGAVLDVKIYRKGG-- 252
Query: 171 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE-REQELKG 219
+ F F + DA +A+ L+G+ GKA K S R Q KG
Sbjct: 253 ---YAFAQFASHADAVRAIVGLSGQNLG------GKALKCSWGRHQARKG 293
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RAL+ LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGN
Sbjct: 364 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGN 423
Query: 67 ILSCKIATDGSGQSKGFGFVQFE 89
ILSCK+A D G KG+GFV F+
Sbjct: 424 ILSCKVACDEKG-PKGYGFVHFQ 445
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 18/151 (11%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 311 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 370
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + G N++IKNLG +ID++ L
Sbjct: 371 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NVFIKNLGKTIDNKAL 414
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAF 282
+FS FG I SCKV D G KG GFV F
Sbjct: 415 YNIFSAFGNILSCKVACDEKG-PKGYGFVHF 444
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 310 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 369
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 370 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 425
Query: 160 SAVVMRDGDGKSKCFGFVNFE 180
S V D G K +GFV+F+
Sbjct: 426 SCKVACDEKGP-KGYGFVHFQ 445
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 290
F +LY+ +L + + L E FS G I S ++ RD + S G +V + P +A R
Sbjct: 307 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 366
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEERR 317
AL +N +I +P+ + +QR R
Sbjct: 367 ALETLNFDVIKGRPVRIMWSQRDPSLR 393
>gi|452845910|gb|EME47843.1| hypothetical protein DOTSEDRAFT_167231 [Dothistroma septosporum
NZE10]
Length = 500
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/431 (25%), Positives = 187/431 (43%), Gaps = 59/431 (13%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGF--GFVQFENKESAQNAIDK 100
+++ LD + L F + G++ + KI D + QSKG+ GFV++++ +A+ A+
Sbjct: 85 LYVGGLDPRVTEDVLKQIFETTGHVQNVKIIPDKNFQSKGYNYGFVEYDDPGAAERAMQT 144
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG ++ +++ V ++ + T + ++FV +L DE L + F +GT++
Sbjct: 145 LNGRRVHQQEIRV-NWAYQSNTNTKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGTVSE 203
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQ 215
A VM D G+S+ +GFV + + +A KA+ +++G+ R W K Q ++Q
Sbjct: 204 ARVMWDMKTGRSRGYGFVAYRDRGEAEKALSSMDGEWLGSRAIRCNWANQKGQPSFSQQQ 263
Query: 216 ELK----------------GQFEQAMKETVD---KFQGLNLYIKNLGDSIDDEKLKELFS 256
+ Q Q+ + V+ ++Q Y+ NL L LF
Sbjct: 264 AMAQMGMTPTTPYGHHTFPTQGSQSYEMVVNQTPQWQ-TTCYVGNLTPYTTQNDLVPLFQ 322
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
FG +T + D +G FV T E A+ A+ +++G + +PL + + +
Sbjct: 323 NFGYVTETRFQSD-----RGFAFVKMDTHENAANAICQLSGYNVNGRPLKCSWGKDRPPT 377
Query: 317 RARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ-APPAIIPPQAGFG-YQQ 374
QF P S P+ +YP P Q YGQ + PA+ P A G + Q
Sbjct: 378 -----GQFDGYNPAQTPQSAVPQSAVYPGPPQAFFPQ--YGQPSAPAMSPQAATPGQFGQ 430
Query: 375 QLVPG-----------MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 423
+PG P G+ + +P + G Q PGG + Q P P +
Sbjct: 431 HPLPGSFQSTMSATAMQHPPGSWVTPGQMPQSAGGYSSQNPGGF-----MPQPGMPQPGL 485
Query: 424 PHQMPPRGHAY 434
P Q P G Y
Sbjct: 486 P-QATPFGRGY 495
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 43/233 (18%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFS 62
+A RA+ LN ++ + IR+ ++++ + K T N IF+ +L ++ + L FS
Sbjct: 137 AAERAMQTLNGRRVHQQEIRVNWAYQSNTNTKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 196
Query: 63 SFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-------- 113
+FG + ++ D +G+S+G+GFV + ++ A+ A+ ++G + + +
Sbjct: 197 AFGTVSEARVMWDMKTGRSRGYGFVAYRDRGEAEKALSSMDGEWLGSRAIRCNWANQKGQ 256
Query: 114 --------------------GHFL----RKQERETVAIKTK--FNNVFVKNLDESTTDED 147
GH Q E V +T +V NL TT D
Sbjct: 257 PSFSQQQAMAQMGMTPTTPYGHHTFPTQGSQSYEMVVNQTPQWQTTCYVGNLTPYTTQND 316
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
L +F +G +T D + F FV + ++AA A+ L+G + R
Sbjct: 317 LVPLFQNFGYVTETRFQSD-----RGFAFVKMDTHENAANAICQLSGYNVNGR 364
>gi|344250403|gb|EGW06507.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 101
Score = 114 bits (284), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/103 (54%), Positives = 80/103 (77%), Gaps = 4/103 (3%)
Query: 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
+N + K + IM+S RDPS+ KSG N+FI+N+DKSID+KAL+DTFS+FGNILS K+
Sbjct: 1 MNIDVVKGKPVPIMWSQRDPSLGKSGGRNVFIQNVDKSIDNKALYDTFSAFGNILSGKVV 60
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
D +G S+G+GFV F+ +E+ AI+K++G+L+ND +VFVG F
Sbjct: 61 CDENG-SQGYGFVHFKTQEA---AIEKMDGVLLNDCKVFVGRF 99
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287
++ K G N++I+N+ SID++ L + FS FG I S KV+ D +G S+G GFV F T E
Sbjct: 21 SLGKSGGRNVFIQNVDKSIDNKALYDTFSAFGNILSGKVVCDENG-SQGYGFVHFKTQEA 79
Query: 288 ASRALAEMNGKMIVSKPLYVA 308
A+ +M+G ++ ++V
Sbjct: 80 ---AIEKMDGVLLNDCKVFVG 97
Score = 46.2 bits (108), Expect = 0.049, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+R+ K+ NVF++N+D+S ++ L F +G I S V+ D +G S+ +GFV+F+
Sbjct: 17 QRDPSLGKSGGRNVFIQNVDKSIDNKALYDTFSAFGNILSGKVVCDENG-SQGYGFVHFK 75
Query: 181 NADDAAKAVEALNGKKFDDREWYVGK 206
+ A+E ++G +D + +VG+
Sbjct: 76 TQE---AAIEKMDGVLLNDCKVFVGR 98
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 113 bits (283), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/109 (49%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIK+LDKSID++ L FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+V
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 67.8 bits (164), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 136 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 194
V +L T++ L K F G + + RD S +G+VNF DA A+ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 195 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 254
+ + + + +Q + G N++IK+L SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKHLDKSIDNRTLFYL 125
Query: 255 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 62.8 bits (151), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +L + L+ F G + +I D S G+G+V F A+ A++ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+K+LD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204
+ D +G SK + +V+F++ A +A+ +NG ++R+ YV
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEASRALAEMNG 297
+ +LG + ++ L + F G + ++ RDP S G G+V F P +A AL MN
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 298 KMIVSKPLYVAVAQRKEERR 317
+I KP + +Q + R
Sbjct: 82 DLINGKPFRLMWSQPDDRLR 101
>gi|18858615|ref|NP_571524.1| ELAV-like protein 3 [Danio rerio]
gi|1683635|gb|AAB36515.1| zHuC [Danio rerio]
Length = 345
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 43/312 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TIT 159
LNG+ + K + V + + +I+ N++V L ++ + +D++++F +YG IT
Sbjct: 99 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-----------FDDR-------- 200
S +++ G S+ GF+ F+ ++A +A++ LNG+K F +
Sbjct: 153 SRILVNQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 212
Query: 201 ---EWYVGKAQKKSE--REQELKGQFEQAMKETVDKFQGLNL----------YIKNLGDS 245
+ Y A++ + Q + +F +++ G+NL ++ NL
Sbjct: 213 LLTQLYQTAARRYTGPLHHQTQRFRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPE 272
Query: 246 IDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+A +NG + +
Sbjct: 273 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 332
Query: 305 LYVAVAQRKEER 316
L V+ K+ +
Sbjct: 333 LQVSFKTSKQHK 344
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG K + V A+ S ++ NLY+ L ++ + +
Sbjct: 99 LNGLKLQTKTIKVSYARPSSASIRD------------------ANLYVSGLPKTMSQKDM 140
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 308
++LFS++G I + +++ + +GIS+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 141 EQLFSQYGRIITSRILVNQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 309 VAQRKEERRARLQAQFSQMRPVA 331
A ++ QA +Q+ A
Sbjct: 201 FANNPSQKTG--QALLTQLYQTA 221
>gi|403361976|gb|EJY80703.1| Polyadenylate-binding protein [Oxytricha trifallax]
Length = 592
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 34/316 (10%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSS-FGN--ILSCKIATDGSGQSKGFGFVQFENKESAQN 96
T + +KNLDKSI + L + F+ FG +LS K++ + S G G V F + A+
Sbjct: 102 TNVLLVKNLDKSITSQQLDEIFAKVFGEDAVLSAKVSVNADYSSNGHGQVIFACPQLAEQ 161
Query: 97 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 156
A+ K + + K RE ++ FNN+++KN + E +++IFG+YG
Sbjct: 162 ALAKAGEFNFQ-----ISPYQPKDRRE---LRKSFNNIYIKNFPSNWNKEQIEQIFGKYG 213
Query: 157 TITSAVVMRD---GDGKSKCFGFVNFENADD-------AAKAVEALNGKKFDDREWYVGK 206
TI S V+ D G + + FV +E+ ++ A A+ N +++D + YV
Sbjct: 214 TIKSTVIKMDIVQGTYEEAPYAFVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKA 273
Query: 207 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 266
A + REQE K EQ + K G NLY+KN D +E+L+ F +G I S K+
Sbjct: 274 ALPMTLREQEKK--IEQNRFKNYKK--GCNLYVKNFPDDTTEEQLQAYFENYGEIESIKL 329
Query: 267 -MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER-----RARL 320
+D + FV + PE A+ A + + K L++ ++KE R AR
Sbjct: 330 NHKDGKAV---YAFVCYKDPESAAFAKQQSQTETFHGKQLFINFYEQKEVRLIQQEDARD 386
Query: 321 QAQFSQMRPVAMGPSV 336
+ F+ +R ++ ++
Sbjct: 387 RTDFTNLRKQSLASAL 402
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 20/204 (9%)
Query: 28 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD---GSGQSKGFG 84
Y +D + NI+IKN + + + + F +G I S I D G+ + +
Sbjct: 176 YQPKDRRELRKSFNNIYIKNFPSNWNKEQIEQIFGKYGTIKSTVIKMDIVQGTYEEAPYA 235
Query: 85 FVQF---ENKE----SAQNAIDKLNGMLINDKQVFVG----HFLRKQERETVAIK----T 129
FV + ENKE AQNAI N + +++V LR+QE++ +
Sbjct: 236 FVCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKAALPMTLREQEKKIEQNRFKNYK 295
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
K N++VKN + TT+E L+ F YG I S + + DGK+ + FV +++ + AA A
Sbjct: 296 KGCNLYVKNFPDDTTEEQLQAYFENYGEIES-IKLNHKDGKA-VYAFVCYKDPESAAFAK 353
Query: 190 EALNGKKFDDREWYVGKAQKKSER 213
+ + F ++ ++ ++K R
Sbjct: 354 QQSQTETFHGKQLFINFYEQKEVR 377
>gi|449671841|ref|XP_002159569.2| PREDICTED: uncharacterized protein LOC100210692 [Hydra
magnipapillata]
Length = 655
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 159/326 (48%), Gaps = 50/326 (15%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 97
S + +F+KNL + L+ F F I C + + +G+SK G V+F N+E+A +A
Sbjct: 269 SNSKKVFVKNLHEDACDSDLNYLFEQFRPI-KCYVLKERNGRSKRSGVVEFSNEENAFDA 327
Query: 98 IDKLNGMLINDKQVFVGHFLRKQE--RETVA-------------------IKTKFNN--- 133
I +N K++ V K E +++++ I +K +
Sbjct: 328 IRLMNNFEYMSKELCVEPCKSKNESKKDSISDPGIKDPYGSQSSLDSQSSINSKTQSLPL 387
Query: 134 -VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
++VK+L E D DL +F E+ I V+++ +G+SK G V F N +D A+ +
Sbjct: 388 KIYVKSLHEDAQDSDLNNLFAEFRPI-KCYVLKERNGRSKQSGIVEFSNEEDTLNAIRKM 446
Query: 193 NGKKFDDREWYVGKAQKKSEREQEL-----KGQFEQAMKETVD----------------- 230
NG + ++ V + KSE + + K + Q ++D
Sbjct: 447 NGFMYMSKQLCVEFGKSKSEAKDSIPDSRNKAKPSQKSGSSLDLSTRPVQKLKSSKKSRK 506
Query: 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 290
+ L ++NL D ++++ L+ LFS FG I S KVM +G S+G GFV++ T EEAS+
Sbjct: 507 NKKLFKLRVENLDDDVNNDGLRRLFSPFGKIISAKVMTYNNGNSQGYGFVSYETNEEASK 566
Query: 291 ALAEMNGKMIVS-KPLYVAVAQRKEE 315
A++ MNG + S K L VA +++KE+
Sbjct: 567 AISSMNGVQLSSKKSLVVAYSEQKEK 592
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 20/223 (8%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
VFVKNL E D DL +F ++ I V+++ +G+SK G V F N ++A A+ +N
Sbjct: 274 VFVKNLHEDACDSDLNYLFEQFRPI-KCYVLKERNGRSKRSGVVEFSNEENAFDAIRLMN 332
Query: 194 GKKFDDREWYVGKAQKKSEREQE------LKGQF-----EQAMKETVDKFQGL--NLYIK 240
++ +E V + K+E +++ +K + + K Q L +Y+K
Sbjct: 333 NFEYMSKELCVEPCKSKNESKKDSISDPGIKDPYGSQSSLDSQSSINSKTQSLPLKIYVK 392
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
+L + D L LF+EF I C V+++ +G SK SG V FS E+ A+ +MNG M
Sbjct: 393 SLHEDAQDSDLNNLFAEFRPI-KCYVLKERNGRSKQSGIVEFSNEEDTLNAIRKMNGFMY 451
Query: 301 VSKPLYVAVAQRKEERR-----ARLQAQFSQMRPVAMGPSVPP 338
+SK L V + K E + +R +A+ SQ ++ S P
Sbjct: 452 MSKQLCVEFGKSKSEAKDSIPDSRNKAKPSQKSGSSLDLSTRP 494
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 35/231 (15%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I++K+L + L++ F+ F I C + + +G+SK G V+F N+E NAI K+N
Sbjct: 389 IYVKSLHEDAQDSDLNNLFAEFRPI-KCYVLKERNGRSKQSGIVEFSNEEDTLNAIRKMN 447
Query: 103 GMLINDKQVFVGHFLRKQERE------------------TVAIKTK-------------- 130
G + KQ+ V K E + ++ + T+
Sbjct: 448 GFMYMSKQLCVEFGKSKSEAKDSIPDSRNKAKPSQKSGSSLDLSTRPVQKLKSSKKSRKN 507
Query: 131 --FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 188
+ V+NLD+ ++ L+++F +G I SA VM +G S+ +GFV++E ++A+KA
Sbjct: 508 KKLFKLRVENLDDDVNNDGLRRLFSPFGKIISAKVMTYNNGNSQGYGFVSYETNEEASKA 567
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ ++NG + ++ V ++ E+ + G + +E + L+ I
Sbjct: 568 ISSMNGVQLSSKKSLVVAYSEQKEKLNNVDGNKNEVERECCVCYGDLSTRI 618
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 130/310 (41%), Gaps = 52/310 (16%)
Query: 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 96
K I +KNL + L++ F G+I S + D G+SKG G ++F N+E A N
Sbjct: 67 KPSCSKIHVKNLHEDAGDSDLNNLFEQIGSITSFYVLRDNYGRSKGSGVIKFSNEEEASN 126
Query: 97 AIDKL------------------NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKN 138
AI + N +L +D+ F +K++R V+ +
Sbjct: 127 AIRWVTKTYLGRILGMPFDEAFWNSVLWSDESKFQIFGFKKRQR-----------VWRRP 175
Query: 139 LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF---GFVNFENADDAAKAVEALNGK 195
D + D +L+K G +M G CF G N + +NG
Sbjct: 176 CD-ALLDRNLRKTVKHGG----GSIMVWG-----CFASNGVGRLVNVEGIMTGQLKMNGF 225
Query: 196 KFDDR----EWYVGKAQKKSEREQELKGQ----FEQAMKETVDKFQGLNLYIKNLGDSID 247
F + E++ K + K + +L+ + F+ +M E+ +++KNL +
Sbjct: 226 IFMKKKLCVEFFECKNKNKKQPIPDLRMKNPFGFQLSM-ESQSLSNSKKVFVKNLHEDAC 284
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307
D L LF +F I C V+++ +G SK SG V FS E A A+ MN +SK L V
Sbjct: 285 DSDLNYLFEQFRPI-KCYVLKERNGRSKRSGVVEFSNEENAFDAIRLMNNFEYMSKELCV 343
Query: 308 AVAQRKEERR 317
+ K E +
Sbjct: 344 EPCKSKNESK 353
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 148/292 (50%), Gaps = 20/292 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIA-TDGSGQSKGFGFVQFENKESAQNAIDKL 101
+++ NL +S D L F FG + S ++ + +G S+GF FV + A++AI+KL
Sbjct: 96 LYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEKL 155
Query: 102 NGMLINDKQVFVGH----FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
G + + + V +K+E + I+T + +FV NL S E LK +F ++G
Sbjct: 156 QGSDLGGRDMIVNFPAKVLSKKKETDDSYIETPY-QLFVGNLAWSVKKEILKSLFSQHGN 214
Query: 158 ITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK------ 210
+++A V+ G G + FGFV + + A+ +L+GK+F R V +A+
Sbjct: 215 VSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQARPTSKDMVV 274
Query: 211 SEREQEL---KGQFEQAMKETVD-KFQG--LNLYIKNLGDSIDDEKLKELFSEFGTITSC 264
S+ E+ + E +M ETV F G +Y+ NL S+ ++ L ELFS+ G +
Sbjct: 275 SDVEENIAKPSTMVEDSMTETVKATFVGSAYGVYVSNLSLSVKNKALSELFSQHGNVLDA 334
Query: 265 KVMR-DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
+V+ +G S+ GFV FS+ E A+A ++ K + L V A+ K +
Sbjct: 335 RVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDKKEFYERKLVVKEAKVKSQ 386
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 43/312 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TIT 159
LNG+ + K + V + + +I+ N++V L ++ + +D++++F +YG IT
Sbjct: 99 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-----------FDDR-------- 200
S +++ G S+ GF+ F+ ++A +A++ LNG+K F +
Sbjct: 153 SRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 212
Query: 201 ---EWYVGKAQKKSE--REQELKGQFEQAMKETVDKFQGLNL----------YIKNLGDS 245
+ Y A++ + Q + +F +++ G+NL ++ NL
Sbjct: 213 LLTQLYQTAARRYTGPLHHQTQRFRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPE 272
Query: 246 IDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+A +NG + +
Sbjct: 273 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 332
Query: 305 LYVAVAQRKEER 316
L V+ K+ +
Sbjct: 333 LQVSFKTSKQHK 344
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG K + V A+ S ++ NLY+ L ++ + +
Sbjct: 99 LNGLKLQTKTIKVSYARPSSASIRD------------------ANLYVSGLPKTMSQKDM 140
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 308
++LFS++G I + +++ D +GIS+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 309 VAQRKEERRARLQAQFSQMRPVA 331
A ++ QA +Q+ A
Sbjct: 201 FANNPSQKTG--QALLTQLYQTA 221
>gi|323650114|gb|ADX97143.1| polyadenylate-binding protein 1 [Perca flavescens]
Length = 263
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 144/287 (50%), Gaps = 43/287 (14%)
Query: 274 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 333
+K FV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 1 AKVLAFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRA 60
Query: 334 PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP---QAGFGYQQQLVPGMRPAGAPMPNF 390
P P P PSG F+ A IP +A + QL +RP+ P +
Sbjct: 61 VPNPVLNPYQPAPPSGY---FM------AAIPQAQNRAAYYSANQLA-QLRPS----PRW 106
Query: 391 FVPVVSQGQQGQR----PGGRRGAGPVQQT------------QQPLPIMPHQMPPRGHAY 434
+QG + Q P R + P QT Q P + +MP + +
Sbjct: 107 ----ATQGVRPQHFQNMPNAMRPSAPRPQTFNAIRPTTTPNAQVPRMMASQRMPTQALSQ 162
Query: 435 RYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 494
R P G + P M P + P +P+ ++ LA A P++Q+
Sbjct: 163 R-PTGASATAAPVRAMPQHMASQP-QVAMQQPAVHVQGQEPL----TASMLAAAPPQEQK 216
Query: 495 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
+LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 217 QMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 263
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 171 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
+K FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 1 AKVLAFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 55
>gi|296238718|ref|XP_002764276.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 188
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 220 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 279
+FEQ ++ + +QG+NLY+KNL DSIDD+KL++ FS +G I S KVM + S SKG GF
Sbjct: 3 RFEQMKQDWLSCYQGVNLYVKNLDDSIDDDKLRKEFSPYGMIISVKVMTEGSH-SKGFGF 61
Query: 280 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP 337
V FS PE A +A+ EMNG ++ +K LY+A+AQ KEE+RA L Q+ Q M S P
Sbjct: 62 VCFSYPEGAIKAITEMNGCIVGTKLLYMALAQCKEEQRAILTNQYMQHLSTIMTLSNP 119
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNLD SID L FS +G I+S K+ T+GS SKGFGFV F E A AI ++
Sbjct: 19 NLYVKNLDDSIDDDKLRKEFSPYGMIISVKVMTEGS-HSKGFGFVCFSYPEGAIKAITEM 77
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTT 144
NG ++ K +++ K+E+ + N ++++L T
Sbjct: 78 NGCIVGTKLLYMALAQCKEEQRAI-----LTNQYMQHLSTIMT 115
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
N++VKNLD+S D+ L+K F YG I S VM +G SK FGFV F + A KA+ +
Sbjct: 19 NLYVKNLDDSIDDDKLRKEFSPYGMIISVKVMTEGS-HSKGFGFVCFSYPEGAIKAITEM 77
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 225
NG + Y+ AQ K E+ L Q+ Q +
Sbjct: 78 NGCIVGTKLLYMALAQCKEEQRAILTNQYMQHL 110
>gi|356552180|ref|XP_003544447.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 425
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 138/282 (48%), Gaps = 9/282 (3%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
I+I +L +D LH F+S G I S K+ + +G S+G+GFV+F + +A+ +
Sbjct: 99 IWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 158
Query: 102 NGMLI-NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YGTIT 159
G+L+ N +Q F ++ + + ++FV +L TD L + F Y ++
Sbjct: 159 AGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVK 218
Query: 160 SAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
+A V+ D + G+SK +GFV F + + +A+ +NG R +G A + +
Sbjct: 219 AAKVVFDANTGRSKGYGFVRFGDDNQRTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQG 278
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
GQ ++ +++ L ++ DE L++ FS++G I S K+ + KG G
Sbjct: 279 GQSNGTANQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIP-----VGKGCG 333
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320
FV F+ A AL ++NG I + + ++ + ++ R+
Sbjct: 334 FVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRM 375
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 19/167 (11%)
Query: 42 NIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
+IF+ +L + LH+TF+S + ++ + K+ D +G+SKG+GFV+F + A+
Sbjct: 191 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNQRTQAMT 250
Query: 100 KLNGMLINDKQVFV---------GHFLRKQERETV---AIKTKFNNVFVKNLDESTTDED 147
++NG+ + + + + GH Q T + +FV LD + +DED
Sbjct: 251 QMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTANQSEADSTNTTIFVGGLDPNVSDED 310
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
L++ F +YG I S V + G G C GFV F N ++A +A++ LNG
Sbjct: 311 LRQPFSQYGEIVS-VKIPVGKG---C-GFVQFANRNNAEEALQKLNG 352
>gi|344244233|gb|EGW00337.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 101
Score = 112 bits (279), Expect = 7e-22, Method: Composition-based stats.
Identities = 55/103 (53%), Positives = 78/103 (75%), Gaps = 4/103 (3%)
Query: 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73
+N + K I IM+S RD S+RKSG GN+FIKN+DKS D+KAL+D F++FGNILSC++
Sbjct: 1 MNTDVVKGKPIPIMWSQRDSSLRKSGVGNVFIKNVDKSSDNKALYDPFAAFGNILSCQVV 60
Query: 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
D +G SKG+GFV + +E+ AI+K++GML+N+ +VFV F
Sbjct: 61 FDENG-SKGYGFVHLKTQEA---AIEKMDGMLLNECKVFVCRF 99
Score = 49.3 bits (116), Expect = 0.006, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
N++IKN+ S D++ L + F+ FG I SC+V+ D +G SKG GFV T E A+ +M
Sbjct: 29 NVFIKNVDKSSDNKALYDPFAAFGNILSCQVVFDENG-SKGYGFVHLKTQEA---AIEKM 84
Query: 296 NGKMIVSKPLYV 307
+G ++ ++V
Sbjct: 85 DGMLLNECKVFV 96
Score = 45.1 bits (105), Expect = 0.11, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+R++ K+ NVF+KN+D+S+ ++ L F +G I S V+ D +G SK +GFV+ +
Sbjct: 17 QRDSSLRKSGVGNVFIKNVDKSSDNKALYDPFAAFGNILSCQVVFDENG-SKGYGFVHLK 75
Query: 181 NADDAAKAVEALNGKKFDDREWYV 204
+ A+E ++G ++ + +V
Sbjct: 76 TQE---AAIEKMDGMLLNECKVFV 96
>gi|453087889|gb|EMF15930.1| RRM_1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 486
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 103/424 (24%), Positives = 170/424 (40%), Gaps = 57/424 (13%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGF--GFVQFENKESAQNAIDK 100
+++ LD + L F + G++ S KI D + QSKG+ GFV++++ +A+ A+
Sbjct: 83 LYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPGAAERAMQT 142
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG ++ +++ V + F+ +FV +L DE L + F +GT++
Sbjct: 143 LNGRRVHQQEIRVNWAYQSNTSAKEDTSNHFH-IFVGDLSNEVNDEVLLQAFSAFGTVSE 201
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQ 215
A VM D G+S+ +GF F + +A KA+ +++G+ R W K Q ++Q
Sbjct: 202 ARVMWDMKTGRSRGYGFAAFRDRGEAEKALSSMDGEWLGSRAIRCNWANQKGQPSFSQQQ 261
Query: 216 ELK-------------------GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256
+ Q + + + ++Q +Y+ NL L LF
Sbjct: 262 AMAQMGMTPTTPYGHHQFPTQGSQSYEMIVQQTPQWQ-TTVYVGNLTPYTTQNDLVPLFQ 320
Query: 257 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316
FG +T + D +G F+ T E A+ A+ +++G + +PL + + +
Sbjct: 321 NFGYVTETRFQSD-----RGFAFIKMDTHENAANAICQLSGYQVNGRPLKCSWGKDRPPT 375
Query: 317 RARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGF--GYQQ 374
QF P A P PS Q F P + PQ G+QQ
Sbjct: 376 -----GQFDGFSPAAQTPGS--------AFPSATPQAFFPQYQQPGAMSPQGATPAGFQQ 422
Query: 375 QLVPGMRPAGAPMPNFFVPVVSQGQQG----QRPGGRRGAGPVQQTQQPLPIMPHQMPPR 430
PAG P + G QG Q P G P Q +P Q P
Sbjct: 423 -----ASPAGWQQPGMAPSALHPGAQGWPGAQMPHSASGFNPQAQAGYGVPQAAPQSAPF 477
Query: 431 GHAY 434
G Y
Sbjct: 478 GRGY 481
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 43/233 (18%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFS 62
+A RA+ LN ++ + IR+ ++++ + K T N IF+ +L ++ + L FS
Sbjct: 135 AAERAMQTLNGRRVHQQEIRVNWAYQSNTSAKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 194
Query: 63 SFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-- 119
+FG + ++ D +G+S+G+GF F ++ A+ A+ ++G + + + +K
Sbjct: 195 AFGTVSEARVMWDMKTGRSRGYGFAAFRDRGEAEKALSSMDGEWLGSRAIRCNWANQKGQ 254
Query: 120 ------------------------------QERETVAIKT--KFNNVFVKNLDESTTDED 147
Q E + +T V+V NL TT D
Sbjct: 255 PSFSQQQAMAQMGMTPTTPYGHHQFPTQGSQSYEMIVQQTPQWQTTVYVGNLTPYTTQND 314
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
L +F +G +T D + F F+ + ++AA A+ L+G + + R
Sbjct: 315 LVPLFQNFGYVTETRFQSD-----RGFAFIKMDTHENAANAICQLSGYQVNGR 362
>gi|322798581|gb|EFZ20185.1| hypothetical protein SINV_01390 [Solenopsis invicta]
Length = 523
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 138/302 (45%), Gaps = 44/302 (14%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +S+ + FSS G + SCK+ D SGQS G+GFV + E A+ AI+
Sbjct: 28 NLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKAINT 87
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG+ + +K + V + E AIK N++V L ++ +DL+ +F YG I +
Sbjct: 88 LNGLRLQNKTIKVSYARPSSE----AIKGA--NLYVSGLPKNMAQQDLENLFSPYGRIIT 141
Query: 161 AVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGK--KFDDREWYVGKAQKKSEREQEL 217
+ ++ D G SK GF+ F+ +A +A++ LNG K V A S + +
Sbjct: 142 SRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIPKGSSEPITVKFANNPSNNNKAI 201
Query: 218 -----------KGQFEQAMKETVDKFQ----------------------GLNLYIKNLGD 244
+F + +F+ G +++ NL
Sbjct: 202 PPLAAYLAPQATRRFGGPIHHPTGRFRYSPLAGDLLANSMLPGNTMNGAGWCIFVYNLAP 261
Query: 245 SIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
++ L +LF FG + S KV+RD + KG GFV + EEA A+ +NG + ++
Sbjct: 262 ETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQSLNGYTLGNR 321
Query: 304 PL 305
L
Sbjct: 322 VL 323
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 22/182 (12%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L +S T ++++ +F G + S ++RD G+S +GFVN+ +DA KA+
Sbjct: 28 NLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKAINT 87
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG + ++ V A+ SE +G NLY+ L ++ + L
Sbjct: 88 LNGLRLQNKTIKVSYARPSSE------------------AIKGANLYVSGLPKNMAQQDL 129
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVA 308
+ LFS +G I + +++ D +G+SKG GF+ F EA RA+ E+NG + S+P+ V
Sbjct: 130 ENLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIPKGSSEPITVK 189
Query: 309 VA 310
A
Sbjct: 190 FA 191
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A +A++ LN L NK+I++ Y+ PS N+++ L K++ + L + FS +G
Sbjct: 81 AEKAINTLNGLRLQNKTIKVSYAR--PSSEAIKGANLYVSGLPKNMAQQDLENLFSPYGR 138
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGML 105
I++ +I D +G SKG GF++F+ + A+ AI +LNG +
Sbjct: 139 IITSRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTI 178
>gi|449470045|ref|XP_004152729.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449496017|ref|XP_004160013.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 429
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 145/290 (50%), Gaps = 19/290 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
I++ +L +D LH F+S G I S K+ + +G S+G+GFV+F + +A+ +
Sbjct: 94 IWVGDLQHWMDENYLHSCFASTGEISSLKVIRNKQTGISEGYGFVEFFSHTTAEKVLQNY 153
Query: 102 NGMLI-NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG-EYGTIT 159
+ +L+ N +Q F ++ + + ++FV +L TD L + F +Y ++
Sbjct: 154 SSILMPNTEQAFRLNWATFSTGDKRSENGSDLSIFVGDLAADVTDSVLHETFASKYSSVK 213
Query: 160 SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA--QKKSEREQE 216
+A V+ D G SK +GFV F + ++ ++A+ +NG R +G A +K S +Q+
Sbjct: 214 AAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTEMNGIYCSSRPMRIGAATPKKSSGYQQQ 273
Query: 217 L-------KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
G F + D F ++I L ++ DE LK+LFS+ G I S K+
Sbjct: 274 YSSQGYASNGSFSHGHQSDGD-FTNTTIFIGGLDPNVTDEDLKQLFSQHGEIVSVKIP-- 330
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
+ KG GF+ F+ + A AL ++NG +I + + ++ + ++ R
Sbjct: 331 ---VGKGCGFIQFANRKNAEEALQKLNGTVIGKQTVRLSWGRSPTNKQYR 377
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 110/221 (49%), Gaps = 32/221 (14%)
Query: 1 MFMLSSAARALDVLN--FTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHK 55
F ++A + L + P ++ R+ ++ ++S G+ IF+ +L +
Sbjct: 140 FFSHTTAEKVLQNYSSILMPNTEQAFRLNWATFSTGDKRSENGSDLSIFVGDLAADVTDS 199
Query: 56 ALHDTFSS-FGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
LH+TF+S + ++ + K+ D +G SKG+GFV+F + A+ ++NG+ + + + +
Sbjct: 200 VLHETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTEMNGIYCSSRPMRI 259
Query: 114 GH--------FLRKQERETVAIKTKFNN------------VFVKNLDESTTDEDLKKIFG 153
G + ++ + A F++ +F+ LD + TDEDLK++F
Sbjct: 260 GAATPKKSSGYQQQYSSQGYASNGSFSHGHQSDGDFTNTTIFIGGLDPNVTDEDLKQLFS 319
Query: 154 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
++G I S V + G G C GF+ F N +A +A++ LNG
Sbjct: 320 QHGEIVS-VKIPVGKG---C-GFIQFANRKNAEEALQKLNG 355
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 16/195 (8%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 192
++V +L + L F G I+S V+R+ G S+ +GFV F + A K ++
Sbjct: 94 IWVGDLQHWMDENYLHSCFASTGEISSLKVIRNKQTGISEGYGFVEFFSHTTAEKVLQN- 152
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
Y +E+ L + + L++++ +L + D L
Sbjct: 153 ----------YSSILMPNTEQAFRLNWATFSTGDKRSENGSDLSIFVGDLAADVTDSVLH 202
Query: 253 ELF-SEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
E F S++ ++ + KV+ DP +G SKG GFV F E S+A+ EMNG S+P+ + A
Sbjct: 203 ETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTEMNGIYCSSRPMRIGAA 262
Query: 311 QRKEERRARLQAQFS 325
K + + Q Q+S
Sbjct: 263 TPK--KSSGYQQQYS 275
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 28 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQ 87
+SH S IFI LD ++ + L FS G I+S KI KG GF+Q
Sbjct: 285 FSHGHQSDGDFTNTTIFIGGLDPNVTDEDLKQLFSQHGEIVSVKIPV-----GKGCGFIQ 339
Query: 88 FENKESAQNAIDKLNGMLINDKQV 111
F N+++A+ A+ KLNG +I + V
Sbjct: 340 FANRKNAEEALQKLNGTVIGKQTV 363
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 57/326 (17%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TIT 159
LNG+ + K + V + + +I+ N++V L ++ + +D++++F +YG IT
Sbjct: 99 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK-----------KFDDR-------- 200
S +++ G S+ GF+ F+ ++A +A++ LNG+ KF +
Sbjct: 153 SRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 212
Query: 201 ----------EWYVGKAQKKSER---------EQELKGQFEQAMKETVDKFQGLNL---- 237
Y G +++R +K +F +++ G+NL
Sbjct: 213 LLTQLYQTAARRYTGPLHHQTQRFRLDNLLNASYGVKSRFSPITIDSMTSLAGVNLTGPT 272
Query: 238 ------YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+
Sbjct: 273 GAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAM 332
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEER 316
A+A +NG + + L V+ K+ +
Sbjct: 333 AIASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG K + V A+ S ++ NLY+ L ++ + +
Sbjct: 99 LNGLKLQTKTIKVSYARPSSASIRD------------------ANLYVSGLPKTMSQKDM 140
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 308
++LFS++G I + +++ D +GIS+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 309 VAQRKEERRARLQAQFSQMRPVA 331
A ++ QA +Q+ A
Sbjct: 201 FANNPSQKTG--QALLTQLYQTA 221
>gi|147863287|emb|CAN82615.1| hypothetical protein VITISV_036127 [Vitis vinifera]
Length = 88
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 64/70 (91%)
Query: 494 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 553
R +LGESLYPLV+QLE + AAKVTGMLLEM QTE LHLLESPEALK+KVA+AM+VLR+VA
Sbjct: 7 RKMLGESLYPLVDQLEHEMAAKVTGMLLEMGQTEFLHLLESPEALKSKVAKAMDVLRNVA 66
Query: 554 QQQANNPADQ 563
QQQAN+P +Q
Sbjct: 67 QQQANSPTEQ 76
>gi|356562301|ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 401
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 138/282 (48%), Gaps = 9/282 (3%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
I+I +L +D LH F+S G I S K+ + +G S+G+GFV+F + +A+ +
Sbjct: 75 IWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 134
Query: 102 NGMLI-NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YGTIT 159
G+L+ N +Q F ++ + + ++FV +L TD L + F Y ++
Sbjct: 135 AGILMPNAEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVK 194
Query: 160 SAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
+A V+ D + G+SK +GFV F + ++ +A+ +NG R +G A + +
Sbjct: 195 AAKVVFDANTGRSKGYGFVRFGDDNERTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQG 254
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
G ++ +++ L ++ DE L++ FS++G I S K+ + KG G
Sbjct: 255 GLSNGTANQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIP-----VGKGCG 309
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320
FV F+ A AL ++NG I + + ++ + ++ R+
Sbjct: 310 FVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRM 351
>gi|281206149|gb|EFA80338.1| RNA recognition motif-containing protein RRM [Polysphondylium
pallidum PN500]
Length = 640
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 112/230 (48%), Gaps = 28/230 (12%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192
NVFVK L D +L +F +G + SA VM D G S +GFV F + ++ KA++ +
Sbjct: 70 NVFVKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYGFVRFSSPSESKKAIDNM 129
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
+G + ++L + +K+ NL++K L ++ D++LK
Sbjct: 130 DGFQL---------------MHKKLLCRLSNLYSNCNNKYPSNNLFLKPLPATLSDDQLK 174
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVSK-PLYVAVA 310
ELFS FG I CKVM D +G SK +GFV F +A++A+ MNG KM S PL V A
Sbjct: 175 ELFSPFGEILECKVMIDQNGNSKLAGFVRFCNEADATKAMQAMNGTKMKDSPAPLVVKYA 234
Query: 311 QRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 360
+ ++ R Q ++S + P P P Y +LY Q P
Sbjct: 235 DNEHQKSLRKQRKYSHF----INPH--PVNPYY-----NYVDHYLYFQVP 273
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 8/194 (4%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P + + N+F+K L L FS FG ++S K+ D G S G+GFV+F +
Sbjct: 61 PDLLEKDQTNVFVKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYGFVRFSSPS 120
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
++ AID ++G + K++ K NN+F+K L + +D+ LK++F
Sbjct: 121 ESKKAIDNMDGFQLMHKKLLCR---LSNLYSNCNNKYPSNNLFLKPLPATLSDDQLKELF 177
Query: 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-----YVGKA 207
+G I VM D +G SK GFV F N DA KA++A+NG K D Y
Sbjct: 178 SPFGEILECKVMIDQNGNSKLAGFVRFCNEADATKAMQAMNGTKMKDSPAPLVVKYADNE 237
Query: 208 QKKSEREQELKGQF 221
+KS R+Q F
Sbjct: 238 HQKSLRKQRKYSHF 251
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 101
+F+ +L +D L+ FS FG + S ++ TD +G++KG+GFV+F+NK+ A +++++
Sbjct: 508 LFVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEM 567
Query: 102 NGMLINDKQVFV 113
NG+ + K + V
Sbjct: 568 NGLQVGQKYLKV 579
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEM 295
L++ +L +DD L +LFS FG + S +V+ D +G +KG GFV F ++A +L EM
Sbjct: 508 LFVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEM 567
Query: 296 NGKMIVSKPLYVAVAQR 312
NG + K L V + +
Sbjct: 568 NGLQVGQKYLKVKLKDK 584
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 192
+FV +L D L K+F +G + S V+ D D G++K +GFV F+N DDA ++ +
Sbjct: 508 LFVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEM 567
Query: 193 NG 194
NG
Sbjct: 568 NG 569
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 23/219 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++ NLD D+ L ++F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N K GKA + ++ Q+ + F+ G N+++ NL +D++ +
Sbjct: 90 MNMVKL------YGKALRLNKSAQDRR-NFDV----------GANVFLGNLDPDVDEKTI 132
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ FS FG I S K+MRDP +G+S+G GFV+F T E + ALA MNG+ I ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 311 QRKEERRARLQAQFSQM----RPVAMGPSVPPRMPMYPP 345
+K+ R R + ++ RP + P+ P + PP
Sbjct: 193 YKKDTRGERHGSAAERLLAANRPQIINPNAPATGGVKPP 231
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++I NLD +D L + F G + + + D +G +G+GFV+F N+ A A+
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N + + K + + Q+R + NVF+ NLD ++ + F +G I S
Sbjct: 90 MNMVKLYGKALRLNK--SAQDRRNFDVGA---NVFLGNLDPDVDEKTIYDTFSAFGNIIS 144
Query: 161 AVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
A +MRD + G S+ FGFV+F+ + + A+ A+NG+ +R +V A KK R +
Sbjct: 145 AKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTRGER 201
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL ++N L K++R+ S +D G N+F+ NLD +D K ++DTFS+FGN
Sbjct: 83 ADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVDEKTIYDTFSAFGN 141
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
I+S KI D +G S+GFGFV F+ E++ A+ +NG I ++ + V + +K R
Sbjct: 142 IISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
+ + ++ Q LYI NL +DD+ L ELF + G + + V RD +G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 284 TPEEASRALAEMNGKMIVSKPLYV 307
+A AL MN + K L +
Sbjct: 79 NEVDADYALKLMNMVKLYGKALRL 102
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 23/219 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++ NLD D+ L ++F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N K GKA + ++ Q+ + F+ G N+++ NL +D++ +
Sbjct: 90 MNMVKL------YGKALRLNKSAQDRR-NFDV----------GANVFLGNLDPDVDEKTI 132
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ FS FG I S K+MRDP +G+S+G GFV+F T E + ALA MNG+ I ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 311 QRKEERRARLQAQFSQM----RPVAMGPSVPPRMPMYPP 345
+K+ R R + ++ RP + P+ P + PP
Sbjct: 193 YKKDTRGERHGSAAERLLAANRPQIINPNAPATGGVKPP 231
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++I NLD +D L + F G + + + D +G +G+GFV+F N+ A A+
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N + + K + + Q+R + NVF+ NLD ++ + F +G I S
Sbjct: 90 MNMVKLYGKALRLNK--SAQDRRNFDVGA---NVFLGNLDPDVDEKTIYDTFSAFGNIIS 144
Query: 161 AVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
A +MRD + G S+ FGFV+F+ + + A+ A+NG+ +R +V A KK R +
Sbjct: 145 AKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTRGER 201
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL ++N L K++R+ S +D G N+F+ NLD +D K ++DTFS+FGN
Sbjct: 83 ADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVDEKTIYDTFSAFGN 141
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
I+S KI D +G S+GFGFV F+ E++ A+ +NG I ++ + V + +K R
Sbjct: 142 IISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
+ + ++ Q LYI NL +DD+ L ELF + G + + V RD +G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 284 TPEEASRALAEMNGKMIVSKPLYV 307
+A AL MN + K L +
Sbjct: 79 NEVDADYALKLMNMVKLYGKALRL 102
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 23/219 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++ NLD D+ L ++F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
+N K GKA + ++ Q+ + F+ G N+++ NL +D++ +
Sbjct: 90 MNMVKL------YGKALRLNKSAQDRR-NFDV----------GANVFLGNLDPDVDEKTI 132
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
+ FS FG I S K+MRDP +G+S+G GFV+F T E + ALA MNG+ I ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 311 QRKEERRARLQAQFSQM----RPVAMGPSVPPRMPMYPP 345
+K+ R R + ++ RP + P+ P + PP
Sbjct: 193 YKKDTRGERHGSAAERLLAANRPQIINPNAPATGGVKPP 231
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++I NLD +D L + F G + + + D +G +G+GFV+F N+ A A+
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N + + K + + Q+R + NVF+ NLD ++ + F +G I S
Sbjct: 90 MNMVKLYGKALRLNK--SAQDRRNFDVGA---NVFLGNLDPDVDEKTIYDTFSAFGNIIS 144
Query: 161 AVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
A +MRD + G S+ FGFV+F+ + + A+ A+NG+ +R +V A KK R +
Sbjct: 145 AKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTRGER 201
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL ++N L K++R+ S +D G N+F+ NLD +D K ++DTFS+FGN
Sbjct: 83 ADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVDEKTIYDTFSAFGN 141
Query: 67 ILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
I+S KI D +G S+GFGFV F+ E++ A+ +NG I ++ + V + +K R
Sbjct: 142 IISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
+ + ++ Q LYI NL +DD+ L ELF + G + + V RD +G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 284 TPEEASRALAEMNGKMIVSKPLYV 307
+A AL MN + K L +
Sbjct: 79 NEVDADYALKLMNMVKLYGKALRL 102
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 23/218 (10%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
+++ NLD D+ L ++F + G + + V RD G + +GFV F N DA A++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N K GK+ + ++ Q+ + F+ G N+++ NL +D++ +
Sbjct: 91 NMVKL------YGKSLRLNKSAQDRR-NFDV----------GANIFLGNLDPDVDEKTIY 133
Query: 253 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I + K+MRDP +GIS+G GFV+F T E + ALA MNG+ I ++P++V+ A
Sbjct: 134 DTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAY 193
Query: 312 RKEERRARLQAQFSQM----RPVAMGPSVPPRMPMYPP 345
+K+ R R + ++ RP + P+ P + PP
Sbjct: 194 KKDTRGERHGSAAERLLAANRPQIINPNAPATGGVKPP 231
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A AL ++N L KS+R+ S +D G NIF+ NLD +D K ++DTFS+FGN
Sbjct: 83 ADYALKLMNMVKLYGKSLRLNKSAQDRRNFDVGA-NIFLGNLDPDVDEKTIYDTFSTFGN 141
Query: 67 ILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 122
IL+ KI D +G S+GFGFV F+ E++ A+ +NG I ++ + V + +K R
Sbjct: 142 ILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 101
++I NLD +D L + F G + + + D +G +G+GFV+F N+ A A+ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N + + K + + Q+R + N+F+ NLD ++ + F +G I +A
Sbjct: 91 NMVKLYGKSLRLNK--SAQDRRNFDVGA---NIFLGNLDPDVDEKTIYDTFSTFGNILTA 145
Query: 162 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216
+MRD + G S+ FGFV+F+ + + A+ A+NG+ +R +V A KK R +
Sbjct: 146 KIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTRGER 201
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 283
+ + ++ Q LYI NL +DD+ L ELF + G + + V RD +G +G GFV F+
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFT 78
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
+A AL MN + K L + + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKSLR--LNKSAQDRR 110
>gi|363744747|ref|XP_001233484.2| PREDICTED: ELAV-like protein 2 isoform 1 [Gallus gallus]
Length = 345
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 154/312 (49%), Gaps = 43/312 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +S+ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 39 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 98
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TIT 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG IT
Sbjct: 99 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 152
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK--FDDREWYVGKAQKKSER-EQE 216
S +++ G S+ GF+ F+ +A +A++ LNG+K V A S++ Q
Sbjct: 153 SRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANNPSQKTNQA 212
Query: 217 LKGQF-------------EQAMK-----ETVD---KFQGLN----------LYIKNLGDS 245
+ Q +QA + T+D G+N +++ NL
Sbjct: 213 ILSQLYHSPNRRYPAPLAQQAQRFRFPPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPD 272
Query: 246 IDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+A +NG + +
Sbjct: 273 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 332
Query: 305 LYVAVAQRKEER 316
L V+ K +
Sbjct: 333 LQVSFKTNKTHK 344
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 24/199 (12%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L +S T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 39 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 98
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG + + V A+ S + NLY+ L ++ ++L
Sbjct: 99 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 140
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPLYVA 308
++LFS++G I + +++ D +G+S+G GF+ F EA A+ +NG+ ++P+ V
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVK 200
Query: 309 VAQRKEERRARLQAQFSQM 327
A ++ QA SQ+
Sbjct: 201 FANNPSQKTN--QAILSQL 217
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 38 SGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95
+GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 258 AGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 317
Query: 96 NAIDKLNGMLINDKQVFVGHFLRKQER 122
AI LNG + D+ + V K +
Sbjct: 318 MAIASLNGYRLGDRVLQVSFKTNKTHK 344
>gi|449687377|ref|XP_002170842.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Hydra magnipapillata]
Length = 316
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 114/242 (47%), Gaps = 27/242 (11%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
+FVK L E D DL +F +G+ITS V+RD + +SK G V F +A A+ +N
Sbjct: 50 IFVKCLHEDVNDSDLNHLFARFGSITSCYVLRDKNRRSKGSGVVKFSTEQEATDAIRKMN 109
Query: 194 GKKFDDREWYVGKAQKKSEREQELKGQFE-----------------------QAMKETV- 229
G F + V + K E EL+ + ++ K++V
Sbjct: 110 GTMFMTKTLCVEFFKCKKESVPELRIKASSSIKSASLLDLSTRSAQSSTINPRSTKDSVK 169
Query: 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 289
+ + NL I+NL D +DD L LFS FG I S KVM +G SKG G+V + T EEAS
Sbjct: 170 NDLKNCNLRIENLDDDVDDNGLYRLFSCFGKIKSAKVMTYNNGKSKGYGYVCYETNEEAS 229
Query: 290 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV-PPRMPMYPPGPS 348
+A++ MNG + SK V E+R+ ++ + S+ R+ P G S
Sbjct: 230 KAISSMNGVQLSSKETLVITYY--EQRKNFNNVDGNKNEECCICYSILTTRIVFDPCGHS 287
Query: 349 GL 350
+
Sbjct: 288 CV 289
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 36/198 (18%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
IF+K L + ++ L+ F+ FG+I SC + D + +SKG G V+F ++ A +AI K+N
Sbjct: 50 IFVKCLHEDVNDSDLNHLFARFGSITSCYVLRDKNRRSKGSGVVKFSTEQEATDAIRKMN 109
Query: 103 GMLINDKQVFVGHFLRKQE------------------------------------RETVA 126
G + K + V F K+E +++V
Sbjct: 110 GTMFMTKTLCVEFFKCKKESVPELRIKASSSIKSASLLDLSTRSAQSSTINPRSTKDSVK 169
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K N+ ++NLD+ D L ++F +G I SA VM +GKSK +G+V +E ++A+
Sbjct: 170 NDLKNCNLRIENLDDDVDDNGLYRLFSCFGKIKSAKVMTYNNGKSKGYGYVCYETNEEAS 229
Query: 187 KAVEALNGKKFDDREWYV 204
KA+ ++NG + +E V
Sbjct: 230 KAISSMNGVQLSSKETLV 247
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%)
Query: 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 293
G +++K L + ++D L LF+ FG+ITSC V+RD + SKGSG V FST +EA+ A+
Sbjct: 47 GSKIFVKCLHEDVNDSDLNHLFARFGSITSCYVLRDKNRRSKGSGVVKFSTEQEATDAIR 106
Query: 294 EMNGKMIVSKPLYVAVAQRKEE 315
+MNG M ++K L V + K+E
Sbjct: 107 KMNGTMFMTKTLCVEFFKCKKE 128
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+ I+NLD +D L+ FS FG I S K+ T +G+SKG+G+V +E E A AI +
Sbjct: 176 NLRIENLDDDVDDNGLYRLFSCFGKIKSAKVMTYNNGKSKGYGYVCYETNEEASKAISSM 235
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 134
NG+ ++ K+ V + +++ FNNV
Sbjct: 236 NGVQLSSKETLVITYYEQRKN--------FNNV 260
>gi|403416100|emb|CCM02800.1| predicted protein [Fibroporia radiculosa]
Length = 433
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 45/343 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG--FGFVQFENKESAQNAID 99
++++ NL + L + F+ G + KI D + Q G +GFV++ + +A+ A+
Sbjct: 17 HLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMRAAETALQ 76
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 159
LNG I D ++ V + Q+ + + +VFV +L DE L K F +GT++
Sbjct: 77 TLNGRKIFDTEIRVNWAYQGQQNKE--DTSNHYHVFVGDLSPEVNDEVLGKAFSAFGTLS 134
Query: 160 SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE------ 212
A VM D GKS+ +GF+ F + DA +A+ +NG+ R V A +K++
Sbjct: 135 DARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWANQKTQGGPSPT 194
Query: 213 ---REQELKG------------QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 257
R + G +E +++T +Y+ NL L LF
Sbjct: 195 MPGRPSGMGGAPAPINFQGGPLSYESVVQQT--PAYNTTVYVGNLVPYCTQADLIPLFQS 252
Query: 258 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
G ++ ++ D +G FV T E A+ A+ ++ G+M+ +P+ + + + +
Sbjct: 253 IGYLSEIRMQAD-----RGFAFVKLDTHEHAAMAIVQLQGQMVHGRPIKCSWGKDRADGT 307
Query: 318 ARLQAQFSQMRPVAMGPSVPP--RMPMYPPGPSGLGQQFLYGQ 358
A L M P P+ P ++PMY G+ Q YGQ
Sbjct: 308 APLST--GSMSPT---PAAAPYGQLPMY-----GMPQPNTYGQ 340
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 39/231 (16%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRK--SGTGNIFIKNLDKSIDHKALHDTF 61
+ +A AL LN + + IR+ ++++ ++ S ++F+ +L ++ + L F
Sbjct: 68 MRAAETALQTLNGRKIFDTEIRVNWAYQGQQNKEDTSNHYHVFVGDLSPEVNDEVLGKAF 127
Query: 62 SSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120
S+FG + ++ D SG+S+G+GF+ F +K A+ AI +NG + + + V +K
Sbjct: 128 SAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWANQKT 187
Query: 121 E-----------------------------RETVAIKTKFNN--VFVKNLDESTTDEDLK 149
+ E+V +T N V+V NL T DL
Sbjct: 188 QGGPSPTMPGRPSGMGGAPAPINFQGGPLSYESVVQQTPAYNTTVYVGNLVPYCTQADLI 247
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
+F G ++ + D + F FV + + AA A+ L G+ R
Sbjct: 248 PLFQSIGYLSEIRMQAD-----RGFAFVKLDTHEHAAMAIVQLQGQMVHGR 293
>gi|356565743|ref|XP_003551097.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 411
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 129/300 (43%), Gaps = 31/300 (10%)
Query: 26 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGF 85
I+ + P S ++++ N+ + L + FS+ G + CK+ + +GF
Sbjct: 31 ILSGNLPPGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRK---EKSSYGF 87
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTD 145
V + ++ SA AI LNG I + + V +RE + N+FV +L TD
Sbjct: 88 VDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDT---SGHFNIFVGDLSPEVTD 144
Query: 146 EDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE--- 201
L F Y + + A VM D G+S+ FGFV+F N DA A+ L GK R+
Sbjct: 145 ATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 204
Query: 202 -WYVGKAQKKSEREQE--------LKGQFEQAMKETVDKF-----QGLNLYIKNLGDSID 247
W A E++ G E + T D Q +Y+ NL +
Sbjct: 205 NWATKGASASDEKQTSDSRSVVELTNGSSEDGQETTNDDTPEKNPQYTTVYVGNLAPEVT 264
Query: 248 DEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
L + F GTI +V RD KG GFV +ST EA+ A+ N +++ KP+
Sbjct: 265 SVDLHQHFHSLNAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARILFGKPI 319
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 40/228 (17%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRK--SGTGNIFIKNLDKSIDHKALHD 59
F SSAA A+ LN + + I++ +++ S R+ SG NIF+ +L + L+
Sbjct: 91 FDRSSAAFAIVTLNGRNIFGQPIKVNWAYAS-SQREDTSGHFNIFVGDLSPEVTDATLYA 149
Query: 60 TFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
FS + + ++ D +G+S+GFGFV F N++ AQ+AI+ L G + +Q+ +
Sbjct: 150 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 209
Query: 119 -------KQERETVAI----------------------KTKFNNVFVKNLDESTTDEDLK 149
KQ ++ ++ ++ V+V NL T DL
Sbjct: 210 GASASDEKQTSDSRSVVELTNGSSEDGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLH 269
Query: 150 KIFGEY--GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
+ F GTI V RD K FGFV + +AA A++ N +
Sbjct: 270 QHFHSLNAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNAR 312
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
++Y+ N+ + D L+ELFS G + CK++R GFV + A+ A+ +
Sbjct: 47 SVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEK---SSYGFVDYFDRSSAAFAIVTL 103
Query: 296 NGKMIVSKPLYVAVAQRKEER 316
NG+ I +P+ V A +R
Sbjct: 104 NGRNIFGQPIKVNWAYASSQR 124
>gi|224067280|ref|XP_002302445.1| predicted protein [Populus trichocarpa]
gi|222844171|gb|EEE81718.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 147/293 (50%), Gaps = 18/293 (6%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCK-IATDGSGQSKGFGFVQFENKESAQNAIDKL 101
I I +L +D LH F+S G I S K I + +G S+G+GFV+F +A+ +
Sbjct: 98 ICIGDLHHWMDENYLHTCFASTGEIASIKVIRSKQTGLSEGYGFVEFFTHATAEKVLQNY 157
Query: 102 NGMLI-NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG-EYGTIT 159
G+L+ N +Q F ++ + + T ++FV +L TD L++ F +Y ++
Sbjct: 158 GGILMPNTEQPFRLNWATFSTGDKRSDNTPDLSIFVGDLAADVTDSLLQETFASKYQSVK 217
Query: 160 SAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA--QKKSEREQE 216
SA V+ D + G+SK +GFV F + + +A+ +NG R +G A +K S +Q+
Sbjct: 218 SAKVVFDANTGRSKGYGFVRFGDDTERTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQ 277
Query: 217 ----LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 272
G Q + D +++ L ++ DE LK+ FS++G I S K+
Sbjct: 278 GGYGSNGASSQGFQSDGDS-SNATIFVGGLDPNVTDEDLKQPFSQYGEIVSVKIP----- 331
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325
+SKG GFV F+ A AL ++NG +I + + ++ + ++ R A FS
Sbjct: 332 VSKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPGHKQHR--ADFS 382
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 42 NIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 99
+IF+ +L + L +TF+S + ++ S K+ D +G+SKG+GFV+F + A+
Sbjct: 190 SIFVGDLAADVTDSLLQETFASKYQSVKSAKVVFDANTGRSKGYGFVRFGDDTERTQAMT 249
Query: 100 KLNGMLINDKQVFVGHFLRKQER---------ETVAIKTKFNN--------VFVKNLDES 142
++NG+ + + + +G ++ A F + +FV LD +
Sbjct: 250 EMNGVYCSSRPMRIGAATPRKSSGYQQQGGYGSNGASSQGFQSDGDSSNATIFVGGLDPN 309
Query: 143 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194
TDEDLK+ F +YG I S + SK GFV F N ++A +A++ LNG
Sbjct: 310 VTDEDLKQPFSQYGEIVSVKIP-----VSKGCGFVQFANRNNAEEALQKLNG 356
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 97
S IF+ LD ++ + L FS +G I+S KI SKG GFVQF N+ +A+ A
Sbjct: 296 SSNATIFVGGLDPNVTDEDLKQPFSQYGEIVSVKIPV-----SKGCGFVQFANRNNAEEA 350
Query: 98 IDKLNGMLINDKQV 111
+ KLNG +I + V
Sbjct: 351 LQKLNGTVIGKQTV 364
>gi|357479381|ref|XP_003609976.1| RNA-binding protein [Medicago truncatula]
gi|355511031|gb|AES92173.1| RNA-binding protein [Medicago truncatula]
Length = 415
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 134/308 (43%), Gaps = 31/308 (10%)
Query: 26 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGF 85
I+ + P S ++++ N+ + L + FSS G + CK+ + +GF
Sbjct: 31 ILSGNLPPGFDSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRK---EKSSYGF 87
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTD 145
V + ++ SA AI LNG I + + V + +RE + ++FV +L TD
Sbjct: 88 VDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAYTRGQREDT---SGHFHIFVGDLSPEVTD 144
Query: 146 EDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE--- 201
L F Y + + A VM D G+S+ FGFV+F N +A A+ L GK R+
Sbjct: 145 ATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRC 204
Query: 202 -WYVGKAQKKSEREQE--------LKGQFEQAMKETVDKF-----QGLNLYIKNLGDSID 247
W A E + G E+A + T D Q +Y+ NL +
Sbjct: 205 NWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVT 264
Query: 248 DEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
L F GTI +V RD KG GFV +ST EA+ A+ N + + KP+
Sbjct: 265 SVDLHHHFHALGVGTIEDVRVQRD-----KGFGFVRYSTHGEAALAIQMGNTRFLFGKPI 319
Query: 306 YVAVAQRK 313
+ + ++K
Sbjct: 320 KMHITRKK 327
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 38/227 (16%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSH-RDPSIRKSGTGNIFIKNLDKSIDHKALHDT 60
F SSAA A+ LN + +SI++ +++ R SG +IF+ +L + L+
Sbjct: 91 FDRSSAAIAIVTLNGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYAC 150
Query: 61 FSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV------ 113
FS++ + ++ D +G+S+GFGFV F N++ AQ+AI+ L G + +Q+
Sbjct: 151 FSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKG 210
Query: 114 ----GHFLRKQERETVAIKT-------------------KFNNVFVKNLDESTTDEDLKK 150
G + + V + + ++ V+V NL T DL
Sbjct: 211 ANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHH 270
Query: 151 IFGEY--GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
F GTI V RD K FGFV + +AA A++ N +
Sbjct: 271 HFHALGVGTIEDVRVQRD-----KGFGFVRYSTHGEAALAIQMGNTR 312
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 127/286 (44%), Gaps = 17/286 (5%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
+++ NLD+ + + F G SCK+ + G + FV+F A A+ +N
Sbjct: 16 LYVGNLDRQVTEAFILQLFGQIGPCKSCKMIAEHGGNDP-YCFVEFVEHSHAAAALQTMN 74
Query: 103 GMLINDKQVFVGHFL--RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
G +I K+V V +++T + ++VFV +L DLK F +G I+
Sbjct: 75 GRMILGKEVKVNWATTPSSMKKDT----SNHHHVFVGDLSSEVDTPDLKAAFAPFGQISD 130
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK--SEREQEL 217
A V++D KSK +GFV+F N DA A++ +NG+ R A +K R+ E
Sbjct: 131 ARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRTNWATRKPPPPRQPET 190
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
Q + +YI + + + K++E FS +G I ++ D KG
Sbjct: 191 TKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSHYGHIQEVRIFPD-----KGY 245
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 323
F+ F T E A+ A+ +NG I V + KE QAQ
Sbjct: 246 AFIRFMTHESAAHAIVSVNGSQINGH--MVKCSWGKESSDPLYQAQ 289
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRK--SGTGNIFIKNLDKSIDHKALHDTFS 62
S AA AL +N + K +++ ++ S++K S ++F+ +L +D L F+
Sbjct: 64 SHAAAALQTMNGRMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDLKAAFA 123
Query: 63 SFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-- 119
FG I ++ D + +SKG+GFV F NK A+NAI +NG ++ + + RK
Sbjct: 124 PFGQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRTNWATRKPP 183
Query: 120 --QERET--------VAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
++ ET V + + N V++ + T+ +++ F YG I + D
Sbjct: 184 PPRQPETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSHYGHIQEVRIFPD- 242
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFD 198
K + F+ F + AA A+ ++NG + +
Sbjct: 243 ----KGYAFIRFMTHESAAHAIVSVNGSQIN 269
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 139/276 (50%), Gaps = 15/276 (5%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIAT--DGSGQSKGFGFVQFENKESAQNAIDK 100
+++ NL SI + L D + G + ++AT + +G+SKG G V +E +E+AQNAI
Sbjct: 91 VYVGNLSWSIKWQDLKDHMQAAGPV---ELATVLESNGRSKGCGIVTYETEEAAQNAIAT 147
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN + +++FV Q V K F V+V NL + ++LK + GT+
Sbjct: 148 LNDTELGGRKIFVREDREAQPVSAVKPKRGFR-VYVGNLSWNVKWQELKDHMKKAGTVVH 206
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
A V+ + +G+SK G V + ++AAKA+ LN + + R +V + +RE E G
Sbjct: 207 ADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFV-----REDREPE-GGS 260
Query: 221 FEQAMKETV---DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
+ K +G LY+ NL + ++LK+LF G + + P G S+G
Sbjct: 261 ISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSRGF 320
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
G + ++ +A +A+ +NG I + + V + +R+
Sbjct: 321 GIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKRE 356
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 12/207 (5%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRD---PSIRKSGTGNIFIKNLDKSIDHKALHDTFS 62
+A A+ LN T L + I + +++ +++ NL ++ + L D
Sbjct: 140 AAQNAIATLNDTELGGRKIFVREDREAQPVSAVKPKRGFRVYVGNLSWNVKWQELKDHMK 199
Query: 63 SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-------GH 115
G ++ + + +G+SKG G V++ +E A AI +LN + + +FV G
Sbjct: 200 KAGTVVHADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEGG 259
Query: 116 FLRKQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 173
+ K + A + + ++V NL T + LK +F G + A + DG+S+
Sbjct: 260 SISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSRG 319
Query: 174 FGFVNFENADDAAKAVEALNGKKFDDR 200
FG + + NA DA +A+E LNG + + R
Sbjct: 320 FGIIRYTNAADAWQAIERLNGLEIEGR 346
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 7 AARALDVLNFTPLNNKSIRIM------------YSHRDPSIRKSGTGN-IFIKNLDKSID 53
AA+A+ LN T L + I + ++ R + R SG G +++ NL +
Sbjct: 231 AAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWETN 290
Query: 54 HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113
+ L D F + G++ IA G+S+GFG +++ N A AI++LNG+ I + + V
Sbjct: 291 WQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEV 350
>gi|123975938|ref|XP_001314386.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896695|gb|EAY01839.1| hypothetical protein TVAG_002940 [Trichomonas vaginalis G3]
Length = 307
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 17/232 (7%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIR-KSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
A +A+ N+T LN +SI I ++ R SG GN+F++ +D+SI+ LH+ FS FG
Sbjct: 66 AEKAVRDFNYTKLNGESIVITLTNHGIMQRIVSGEGNLFVRGIDESIEAPQLHELFSHFG 125
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--- 122
++SCKI +G+ +G+ +VQF N A+ +L IN K + + F+ + R
Sbjct: 126 EVISCKIPV-LNGKPRGYAYVQFANPADGDRAMKELADSTINGKAITIEKFINRGMRQPN 184
Query: 123 ----ETVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+ +A F N+F+KNL ES T DL ++F EYG + SA ++ + K GF
Sbjct: 185 KATEQNIATDPTFTNIFIKNLPESINTLLDLLRLFQEYGQVVSARIVPE-----KRSGFA 239
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL--KGQFEQAMKE 227
+ + A +AV LNG+ ++ SER + + EQA++E
Sbjct: 240 KMIDHESAVRAVLGLNGRVIYGHTISCCRSLSLSERAAFMNRNNEEEQAVEE 291
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 24/288 (8%)
Query: 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94
+R+ I + NL S + + FS G +++ + +G + FV+F +KE A
Sbjct: 10 LRQPKDNAIHVSNLPISATVEFIRTLFSECGTVINVFLKNKPTG---SYCFVEFADKEEA 66
Query: 95 QNAIDKLNGMLINDKQVFV---GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A+ N +N + + + H + ++ I + N+FV+ +DES L ++
Sbjct: 67 EKAVRDFNYTKLNGESIVITLTNHGIMQR------IVSGEGNLFVRGIDESIEAPQLHEL 120
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G + S + +GK + + +V F N D +A++ L + + + K +
Sbjct: 121 FSHFGEVISCKIPV-LNGKPRGYAYVQFANPADGDRAMKELADSTINGKAITIEKFINRG 179
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD-EKLKELFSEFGTITSCKVMRDP 270
R+ + A T N++IKNL +SI+ L LF E+G + S +++ +
Sbjct: 180 MRQPNKATEQNIATDPTFT-----NIFIKNLPESINTLLDLLRLFQEYGQVVSARIVPE- 233
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318
K SGF E A RA+ +NG++I + + ER A
Sbjct: 234 ----KRSGFAKMIDHESAVRAVLGLNGRVIYGHTISCCRSLSLSERAA 277
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 146/319 (45%), Gaps = 39/319 (12%)
Query: 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFE 89
R S K N+ + L +++ + FSS G + SCK+ D +GQS G+GFV +
Sbjct: 13 RTGSSTKDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYV 72
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ A+ AI+ LNG+ + K + V + + AIK N++V L ++ T +DL+
Sbjct: 73 KPQDAEKAINTLNGLRLQAKTIKVSY----ARPSSQAIKDA--NLYVSGLPKTMTQQDLE 126
Query: 150 KIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK-----------KF 197
+F +G ITS ++ G+S+ GFV F+ +A +A+ LNG KF
Sbjct: 127 GLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKGATDPITVKF 186
Query: 198 DDR------------------EWYVGKAQKKSER-EQELKGQFEQAMKETVDKFQGLNLY 238
+ Y+G ++ R G + + G ++
Sbjct: 187 ANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGADPMGVGNIPNGGTGFCIF 246
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNG 297
+ NL +D L +LF FG +T+ KV+RD + KG GFV + +EA A+A++NG
Sbjct: 247 VYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQLNG 306
Query: 298 KMIVSKPLYVAVAQRKEER 316
+ + L V+ K +
Sbjct: 307 YCLGGRVLQVSFKTNKAHK 325
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 37/258 (14%)
Query: 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFE 180
R + K N+ V L ++ T +++K +F G + S ++RD G+S +GFVN+
Sbjct: 13 RTGSSTKDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYV 72
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
DA KA+ LNG + + V A+ S QA+K+ NLY+
Sbjct: 73 KPQDAEKAINTLNGLRLQAKTIKVSYARPSS-----------QAIKDA-------NLYVS 114
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM 299
L ++ + L+ LF G I + +++ DP +G S+G GFV F EA RA+ E+NG +
Sbjct: 115 GLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHI 174
Query: 300 I--VSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSV--PPRMPMYPPG--PSGLG 351
+ P+ V A + A+ Q + + P +GP + R P G P G+G
Sbjct: 175 PKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGADPMGVG 234
Query: 352 Q---------QFLYGQAP 360
F+Y AP
Sbjct: 235 NIPNGGTGFCIFVYNLAP 252
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 18 PLNNKSIRIMYS--HRDP----SIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSC 70
P+ +++ R YS DP +I GTG IF+ NL + L F FG + +
Sbjct: 213 PMLHQTARFRYSPMGADPMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNV 272
Query: 71 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 109
K+ D + + KGFGFV + + A AI +LNG + +
Sbjct: 273 KVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQLNGYCLGGR 312
>gi|294884878|gb|ADF47447.1| TIA1-like protein [Dugesia japonica]
Length = 323
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 137/269 (50%), Gaps = 20/269 (7%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102
I++ NL +++ + L F +FG +SC I D S Q+ + F+++ + SA A+ ++
Sbjct: 9 IYVGNLPDAVNDQLLIRIFGNFGQCISCHIIRDFSCQTNPYAFIEYTDHSSASLALSAMD 68
Query: 103 GMLINDKQVFV----GHFLRKQERETVAIKTKFNN---VFVKNLDESTTDEDLKKIFGEY 155
G+ + + Q+ V G + K ++N +FV ++ + LK+ F ++
Sbjct: 69 GIYMWNNQIKVNWSSGPSAVPGPAAVASAKIDYSNSVQIFVGDIGLDVDEPMLKEGFSQF 128
Query: 156 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS-ERE 214
G + A V+R DG+S+ F FV+F N D+A +A+++++ F +R A + + E
Sbjct: 129 GQLIDAKVVRYPDGQSRGFAFVSFSNRDEAERAIQSMHKTWFHNRTIKCNWATRNGLDGE 188
Query: 215 QELKGQ---FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 271
Q +K +E KE N+Y+ G+++ +E L F EFG I S KV +
Sbjct: 189 QFIKYTPRPYELVYKEA--PLTNTNVYVA--GENLTEELLNCHFQEFGRIDSVKVYPE-- 242
Query: 272 GISKGSGFVAFSTPEEASRALAEMNGKMI 300
KG F+ F T E A+RA+++ +G I
Sbjct: 243 ---KGHAFINFVTHEAAARAISQRHGYKI 268
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPS------------IRKSGTGNIFIKNLDKSI 52
SSA+ AL ++ + N I++ +S PS I S + IF+ ++ +
Sbjct: 58 SSASLALSAMDGIYMWNNQIKVNWS-SGPSAVPGPAAVASAKIDYSNSVQIFVGDIGLDV 116
Query: 53 DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 112
D L + FS FG ++ K+ GQS+GF FV F N++ A+ AI ++ +++ +
Sbjct: 117 DEPMLKEGFSQFGQLIDAKVVRYPDGQSRGFAFVSFSNRDEAERAIQSMHKTWFHNRTIK 176
Query: 113 VG----------HFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
F++ R E V + N V E+ T+E L F E+G I S
Sbjct: 177 CNWATRNGLDGEQFIKYTPRPYELVYKEAPLTNTNVYVAGENLTEELLNCHFQEFGRIDS 236
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199
V + K F+NF + AA+A+ +G K +D
Sbjct: 237 VKVYPE-----KGHAFINFVTHEAAARAISQRHGYKIND 270
>gi|331224641|ref|XP_003324992.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303982|gb|EFP80573.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 306
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 110/218 (50%), Gaps = 17/218 (7%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG----NIFIKNLDKSIDHKALHDTF 61
+A A+ N T K R+M SI + G N+F+K+L + A HDTF
Sbjct: 82 AATAAIREFNQTEFLGKPCRVM-----KSIHGAAKGLSEANVFVKHLPAKLSAIAFHDTF 136
Query: 62 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN----DKQVFVGHFL 117
+ FG +LS K+A D KG+GFVQ+ E AQ AI + NG ++ K + F+
Sbjct: 137 ADFGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIKTSLFI 196
Query: 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177
+K+ R + +F NVF +NL T E K+ + +YG ITSA + DGK GF
Sbjct: 197 KKENR---IVSREFKNVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTGFA 253
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215
NFE AAK V+ KK R V +A +SERE+
Sbjct: 254 NFEKPSAAAKVVKVTQKKKAPGRVHAV-RALTRSERER 290
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 20/251 (7%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNI--LSCKIATDGSGQSKGFGFVQFENKESAQNAID 99
++++ +L I + L FS + + K+ + + + +V + + ++A AI
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 100 KLNGMLINDKQVFVGHFLRKQERETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ N + F+G R + A K NVFVK+L + F ++G +
Sbjct: 89 EFN------QTEFLGKPCRVMKSIHGAAKGLSEANVFVKHLPAKLSAIAFHDTFADFGEV 142
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S+ + D K +GFV + A+ A KA+ NG D V A K + +K
Sbjct: 143 LSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLD-----VEGATKPIKTSLFIK 197
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ +E F+ N++ +NL I EK K+ +S++G ITS + G G+G
Sbjct: 198 KENRIVSRE----FK--NVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTG 251
Query: 279 FVAFSTPEEAS 289
F F P A+
Sbjct: 252 FANFEKPSAAA 262
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 29/193 (15%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVM--RDGDGKSKCFGFVNFENADDAAKAVE 190
+V+V +L T+E L ++F + + + + + + +V + +AD A A+
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL---NLYIKNLGDSID 247
N + E G+ + MK +GL N+++K+L +
Sbjct: 89 EFN--------------------QTEFLGKPCRVMKSIHGAAKGLSEANVFVKHLPAKLS 128
Query: 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI----VSK 303
+ F++FG + S K+ D + KG GFV ++T E+A +A+ E NG + +K
Sbjct: 129 AIAFHDTFADFGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATK 188
Query: 304 PLYVAVAQRKEER 316
P+ ++ +KE R
Sbjct: 189 PIKTSLFIKKENR 201
>gi|365812510|ref|NP_001002172.2| ELAV-like protein 2 [Danio rerio]
Length = 389
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 153/326 (46%), Gaps = 57/326 (17%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + A+ AI+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TIT 159
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F ++G IT
Sbjct: 129 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQFGRIIT 182
Query: 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK-----------KFDD--------- 199
S +++ G S+ GF+ F+ +A +A++ LNG+ KF +
Sbjct: 183 SRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQA 242
Query: 200 ---------REWYVGKAQKKSER---------EQELKGQFEQAMKETVDKFQGLNL---- 237
Y G ++++R +K +F + V G+NL
Sbjct: 243 LLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSLAGINLPAHA 302
Query: 238 ------YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290
++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+
Sbjct: 303 GTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAV 362
Query: 291 ALAEMNGKMIVSKPLYVAVAQRKEER 316
A+A +NG + + L V+ K +
Sbjct: 363 AIASLNGYRLGDRVLQVSFKTNKTHK 388
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 115/270 (42%), Gaps = 66/270 (24%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSH-RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
A +A++ LN L K+I++ Y+ SIR + N+++ L K++ K L FS FG
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQFG 178
Query: 66 NILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGM------------LIND---- 108
I++ +I D +G S+G GF++F+ + A+ AI LNG N+
Sbjct: 179 RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Query: 109 -KQVFVGHFLRKQERE--------------------TVAIKTKFN--------------- 132
Q + H + R +K++F+
Sbjct: 239 SSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSLAGINL 298
Query: 133 --------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENAD 183
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D
Sbjct: 299 PAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 358
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSER 213
+AA A+ +LNG + DR V K+ +
Sbjct: 359 EAAVAIASLNGYRLGDRVLQVSFKTNKTHK 388
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 24/199 (12%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LNG + + V A+ S + NLY+ L ++ ++L
Sbjct: 129 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 170
Query: 252 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVA 308
++LFS+FG I + +++ D +G+S+G GF+ F EA A+ +NG+ ++P+ V
Sbjct: 171 EQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVK 230
Query: 309 VAQRKEERRARLQAQFSQM 327
A ++ + QA S +
Sbjct: 231 FANNPSQKSS--QALLSHL 247
>gi|170032722|ref|XP_001844229.1| RNA-binding protein [Culex quinquefasciatus]
gi|167873059|gb|EDS36442.1| RNA-binding protein [Culex quinquefasciatus]
Length = 201
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 69/91 (75%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
NL++KNL ++IDD +L+E FS G +TS KVMR +G+S+G GFV F TP EA RA+ M
Sbjct: 38 NLFVKNLHEAIDDGRLREEFSRCGLVTSAKVMRLENGVSRGYGFVCFRTPYEAQRAIFLM 97
Query: 296 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
NG+++ KPL+V +AQ+KEERR L+AQF +
Sbjct: 98 NGRILDGKPLFVGIAQKKEERRKVLEAQFRK 128
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 188
T N+FVKNL E+ D L++ F G +TSA VMR +G S+ +GFV F +A +A
Sbjct: 34 TNLTNLFVKNLHEAIDDGRLREEFSRCGLVTSAKVMRLENGVSRGYGFVCFRTPYEAQRA 93
Query: 189 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 227
+ +NG+ D + +VG AQKK ER + L+ QF + E
Sbjct: 94 IFLMNGRILDGKPLFVGIAQKKEERRKVLEAQFRKGKTE 132
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 32 DPSIRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 89
+ S+ K+ T N+F+KNL ++ID L + FS G + S K+ +G S+G+GFV F
Sbjct: 26 NSSLEKTATNLTNLFVKNLHEAIDDGRLREEFSRCGLVTSAKVMRLENGVSRGYGFVCFR 85
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
AQ AI +NG +++ K +FVG +K+ER V
Sbjct: 86 TPYEAQRAIFLMNGRILDGKPLFVGIAQKKEERRKV 121
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 122/260 (46%), Gaps = 34/260 (13%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 190
NN+ + L S T+ DL+++F +GTI + +M D KS +GFV FE A++AA+A++
Sbjct: 84 NNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAIQ 143
Query: 191 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
A+NG+++ ++ V A+ S G NLYIKNL +I +++
Sbjct: 144 AMNGRQYMNKRLKVSIARPSSS------------------SITGANLYIKNLPRTITEDQ 185
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVA 308
L+ +F+ FG I S +++ D + KG FV F A RA+AE+N + S+P+ V
Sbjct: 186 LRAIFNPFGEIISARLLYD-GDVPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVK 244
Query: 309 VAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQA 368
A RA + + M YP P G F Q P + P Q
Sbjct: 245 FADTNRRSRAPSGSSAGMHQGSMMA---------YPSMPMPYGGGFQQPQPQPTMAPLQP 295
Query: 369 GFGYQQQLVPGMRPAGAPMP 388
GF + P M P A P
Sbjct: 296 GF---VPMSPDMLPPSARTP 312
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 128/320 (40%), Gaps = 51/320 (15%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
N+ I L S+ L + F FG I + KI TD + +S G+GFV+FE E A AI
Sbjct: 85 NLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAIQA 144
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+NG +K++ V T A N+++KNL + T++ L+ IF +G I S
Sbjct: 145 MNGRQYMNKRLKVSIARPSSSSITGA------NLYIKNLPRTITEDQLRAIFNPFGEIIS 198
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK-----------KFDDRE-------- 201
A ++ DGD K FV F+ A +AV LN KF D
Sbjct: 199 ARLLYDGD-VPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVKFADTNRRSRAPSG 257
Query: 202 ----WYVGKAQKKSEREQELKGQFEQAMKE-TVDKFQ-------------------GLNL 237
+ G G F+Q + T+ Q G L
Sbjct: 258 SSAGMHQGSMMAYPSMPMPYGGGFQQPQPQPTMAPLQPGFVPMSPDMLPPSARTPYGYCL 317
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
++ NL +D++ LF+ FG + S + R ++ GFV EA+ A+ +N
Sbjct: 318 FVFNLPPFMDEDGFARLFANFGGVVSASISRKSLSQARRYGFVTMRDFGEAATAIQNLND 377
Query: 298 KMIVSKPLYVAVAQRKEERR 317
+ L V+ + R
Sbjct: 378 YDVFGYRLSVSFKSNRRNSR 397
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 59/264 (22%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA+ +N NK +++ S PS N++IKNL ++I L F+ FG
Sbjct: 138 AARAIQAMNGRQYMNKRLKV--SIARPSSSSITGANLYIKNLPRTITEDQLRAIFNPFGE 195
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML-INDKQ--------------- 110
I+S ++ DG KG FV+F+ + A+ A+ +LN + N Q
Sbjct: 196 IISARLLYDGD-VPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVKFADTNRRSRA 254
Query: 111 ---------------------VFVGHFLRKQERETVA-----------------IKTKFN 132
+ G F + Q + T+A +T +
Sbjct: 255 PSGSSAGMHQGSMMAYPSMPMPYGGGFQQPQPQPTMAPLQPGFVPMSPDMLPPSARTPYG 314
Query: 133 NV-FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
FV NL ++ ++F +G + SA + R +++ +GFV + +AA A++
Sbjct: 315 YCLFVFNLPPFMDEDGFARLFANFGGVVSASISRKSLSQARRYGFVTMRDFGEAATAIQN 374
Query: 192 LNGKK-FDDREWYVGKAQKKSERE 214
LN F R K+ +++ R
Sbjct: 375 LNDYDVFGYRLSVSFKSNRRNSRH 398
>gi|255641747|gb|ACU21144.1| unknown [Glycine max]
Length = 397
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 132/307 (42%), Gaps = 31/307 (10%)
Query: 26 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGF 85
I+ + P S ++++ N+ + L + FS+ G + CK+ + +GF
Sbjct: 31 ILSGNLPPGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRK---EKSSYGF 87
Query: 86 VQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTD 145
V + ++ SA AI LNG I + + V +RE + N+FV +L TD
Sbjct: 88 VDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDT---SGHFNIFVGDLSPEVTD 144
Query: 146 EDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE--- 201
L F Y + + A VM D G+S+ FGFV+F N DA A+ L GK R+
Sbjct: 145 ATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 204
Query: 202 -WYVGKAQKKSEREQE--------LKGQFEQAMKETVDKF-----QGLNLYIKNLGDSID 247
W A E++ + G E+ + T D Q +Y+ NL +
Sbjct: 205 NWATKGASASDEKQSSDSKIVVELINGSSEEGQETTNDDTPEKNPQYTTVYVGNLAPEVT 264
Query: 248 DEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
L + F G I +V RD KG GFV +ST EA+ A+ N +++ KP+
Sbjct: 265 SVDLHQHFHSLNAGIIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARILFGKPI 319
Query: 306 YVAVAQR 312
+ +
Sbjct: 320 KCSWGSK 326
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIR-KSGTGNIFIKNLDKSIDHKALHDT 60
F SSAA A+ LN + + I++ +++ SG NIF+ +L + L+
Sbjct: 91 FDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYAC 150
Query: 61 FSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR- 118
FS + + ++ D +G+S+GFGFV F N++ AQ+AI+ L G + +Q+ +
Sbjct: 151 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 210
Query: 119 -----------------------KQERETVAIKT-----KFNNVFVKNLDESTTDEDLKK 150
++ +ET T ++ V+V NL T DL +
Sbjct: 211 ASASDEKQSSDSKIVVELINGSSEEGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQ 270
Query: 151 IFGEY--GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
F G I V RD K FGFV + +AA A++ N +
Sbjct: 271 HFHSLNAGIIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNAR 312
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
++Y+ N+ + D L+ELFS G + CK++R GFV + A+ A+ +
Sbjct: 47 SVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEK---SSYGFVDYFDRSSAAFAIVTL 103
Query: 296 NGKMIVSKPLYVAVAQRKEER 316
NG+ I +P+ V A +R
Sbjct: 104 NGRNIFGQPIKVNWAYASSQR 124
>gi|344253912|gb|EGW10016.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 99
Score = 108 bits (270), Expect = 8e-21, Method: Composition-based stats.
Identities = 53/95 (55%), Positives = 72/95 (75%), Gaps = 6/95 (6%)
Query: 22 KSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK 81
K I IM S R PS+RKSG GN+F+KN+DKSID+KAL+DTFS+FGNILSCK+ D + +
Sbjct: 9 KPILIMRSQRIPSLRKSGVGNVFMKNVDKSIDNKALYDTFSAFGNILSCKVVCDENCSN- 67
Query: 82 GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116
GFV F+ +E+ I+ ++G+L+ND +VFVG F
Sbjct: 68 --GFVHFKTQEA---TIEMMDGVLLNDCKVFVGRF 97
Score = 45.1 bits (105), Expect = 0.10, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286
N+++KN+ SID++ L + FS FG I SCKV+ D + +GFV F T E
Sbjct: 29 NVFMKNVDKSIDNKALYDTFSAFGNILSCKVVCDENC---SNGFVHFKTQE 76
Score = 40.4 bits (93), Expect = 2.7, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187
K+ NVF+KN+D+S ++ L F +G I S V+ D + + GFV+F+ +
Sbjct: 24 KSGVGNVFMKNVDKSIDNKALYDTFSAFGNILSCKVVCDENCSN---GFVHFKTQE---A 77
Query: 188 AVEALNGKKFDDREWYVGK 206
+E ++G +D + +VG+
Sbjct: 78 TIEMMDGVLLNDCKVFVGR 96
>gi|119495558|ref|XP_001264561.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
gi|119412723|gb|EAW22664.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
Length = 477
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 161/376 (42%), Gaps = 59/376 (15%)
Query: 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGF--GFVQFENKESAQNAIDK 100
+++ LD + L F + G++ S KI D + SKG+ GFV+F++ +A+ A+
Sbjct: 93 LYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSKGYNYGFVEFDDPGAAERAMQT 152
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LNG I+ ++ V + + F ++FV +L DE L + F +G+++
Sbjct: 153 LNGRRIHQSEIRVNWAYQSNSTNKEDTSSHF-HIFVGDLSNEVNDEILLQAFSAFGSVSE 211
Query: 161 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQ 215
A VM D G+S+ +GFV F DA KA+ A++G+ R W K Q ++Q
Sbjct: 212 ARVMWDMKTGRSRGYGFVAFRERADAEKALNAMDGEWLGSRAIRCNWANQKGQPSISQQQ 271
Query: 216 ELKG--------------------QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+ ++ +++T ++Q Y+ NL L LF
Sbjct: 272 AMAAMGMTPTTPFGHHHFPTHGVQSYDMVVQQT-PQWQ-TTCYVGNLTPYTTQNDLVPLF 329
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
FG + ++ D +G F+ T E A+ A+ ++NG + +PL + K+
Sbjct: 330 HNFGYVLETRLQAD-----RGFAFIKMDTHENAAMAICQLNGYNVNGRPLKCSWG--KDR 382
Query: 316 RRARLQAQFSQMRPVAMGPSVP---------PRMPMYPPGPSGLGQQFL--------YGQ 358
FS +P + S P P P+ P GP+ G+ + YGQ
Sbjct: 383 PPTGQFDNFSGQQPNSPFNSSPATYFPQYGGPGAPITPQGPTPAGRGWEQGGMTGQGYGQ 442
Query: 359 APPAIIPPQAGFGYQQ 374
A P AGFG Q
Sbjct: 443 A-----PQNAGFGRGQ 453
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 43/233 (18%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG---NIFIKNLDKSIDHKALHDTFS 62
+A RA+ LN ++ IR+ ++++ S K T +IF+ +L ++ + L FS
Sbjct: 145 AAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSSHFHIFVGDLSNEVNDEILLQAFS 204
Query: 63 SFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-- 119
+FG++ ++ D +G+S+G+GFV F + A+ A++ ++G + + + +K
Sbjct: 205 AFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALNAMDGEWLGSRAIRCNWANQKGQ 264
Query: 120 ----QERETVAI----KTKFNN------------------------VFVKNLDESTTDED 147
Q++ A+ T F + +V NL TT D
Sbjct: 265 PSISQQQAMAAMGMTPTTPFGHHHFPTHGVQSYDMVVQQTPQWQTTCYVGNLTPYTTQND 324
Query: 148 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200
L +F +G + + D + F F+ + ++AA A+ LNG + R
Sbjct: 325 LVPLFHNFGYVLETRLQAD-----RGFAFIKMDTHENAAMAICQLNGYNVNGR 372
>gi|356547954|ref|XP_003542369.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 410
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 127/293 (43%), Gaps = 31/293 (10%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 92
P S ++++ N+ + L + FS+ G + CK+ + +GFV + ++
Sbjct: 38 PGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRK---EKSSYGFVDYFDRS 94
Query: 93 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152
SA AI LNG I + + V +RE + N+FV +L TD L F
Sbjct: 95 SAAFAIVTLNGRNIFGQPIKVNWAYASSQREDT---SGHFNIFVGDLSPEVTDATLYACF 151
Query: 153 GEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKA 207
Y + + A VM D G+S+ FGFV+F N DA A+ L GK R+ W A
Sbjct: 152 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 211
Query: 208 QKKSEREQE--------LKGQFEQAMKETVDKF-----QGLNLYIKNLGDSIDDEKLKEL 254
E++ + G E+ + T D Q +Y+ NL + L +
Sbjct: 212 SASDEKQSSDSKIVVELINGSSEEGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQH 271
Query: 255 FSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305
F G I +V RD KG GFV +ST EA+ A+ N +++ KP+
Sbjct: 272 FHSLNAGIIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARILFGKPI 319
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIR-KSGTGNIFIKNLDKSIDHKALHDT 60
F SSAA A+ LN + + I++ +++ SG NIF+ +L + L+
Sbjct: 91 FDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYAC 150
Query: 61 FSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR- 118
FS + + ++ D +G+S+GFGFV F N++ AQ+AI+ L G + +Q+ +
Sbjct: 151 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 210
Query: 119 -----------------------KQERETVAIKT-----KFNNVFVKNLDESTTDEDLKK 150
++ +ET T ++ V+V NL T DL +
Sbjct: 211 ASASDEKQSSDSKIVVELINGSSEEGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQ 270
Query: 151 IFGEY--GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
F G I V RD K FGFV + +AA A++ N +
Sbjct: 271 HFHSLNAGIIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNAR 312
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295
++Y+ N+ + D L+ELFS G + CK++R GFV + A+ A+ +
Sbjct: 47 SVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEK---SSYGFVDYFDRSSAAFAIVTL 103
Query: 296 NGKMIVSKPLYVAVAQRKEER 316
NG+ I +P+ V A +R
Sbjct: 104 NGRNIFGQPIKVNWAYASSQR 124
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,157,779,476
Number of Sequences: 23463169
Number of extensions: 430288080
Number of successful extensions: 1598141
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9183
Number of HSP's successfully gapped in prelim test: 21485
Number of HSP's that attempted gapping in prelim test: 1443065
Number of HSP's gapped (non-prelim): 106814
length of query: 575
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 427
effective length of database: 8,886,646,355
effective search space: 3794597993585
effective search space used: 3794597993585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)