BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008162
(575 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/564 (68%), Positives = 459/564 (81%), Gaps = 24/564 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
AARA+ LN+ PL K IR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFSSFGN
Sbjct: 90 AARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 126
I+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTA 209
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVVM+DG+GKSK FGFVNFENADDAA
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 269
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ +KE DKFQ NLY+KNL SI
Sbjct: 270 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 329
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+TPEEA+ A+++++GKMI SKPLY
Sbjct: 330 SDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 389
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRKE+RR RLQAQFSQ+RPVAM PSV PRMP+YPPG G+GQQ YGQAPPA+IPP
Sbjct: 390 VAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPP 449
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q G+GYQQQLVPGMRP G P+P+FF+P+V QQ G R G +Q +QQ P+M Q
Sbjct: 450 QPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPG--GGRRPGGIQHSQQQNPMMQQQ 507
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 486
M PRG +RYP GR G +P P DMG + P+ I AL++ L+
Sbjct: 508 MHPRGRMFRYPQGR---------GGSGDVP-PYDMGNNM---------PLTIGALASNLS 548
Query: 487 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 546
NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 549 NATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 608
Query: 547 EVLRSVAQQQANNPADQLASLSLN 570
+VLRSVA A +QLASL+L+
Sbjct: 609 DVLRSVA---AGGATEQLASLNLS 629
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 157/289 (54%), Gaps = 17/289 (5%)
Query: 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNA 97
G ++++ +LD ++ L D F G +++ ++ D + +S G+G+V F N + A A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 98 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157
I +LN + + K + V + R+ ++ N+F+KNLDES + L F +G
Sbjct: 94 IQELNYIPLYGKPIRVMY----SHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 158 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 217
I S V D G+SK +GFV + N + A KA+E LNG +D++ YVG ++ ER+
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD--- 206
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 277
T +K + N+Y+KNL +S D+ LK F E+G ITS VM+D G SKG
Sbjct: 207 ---------STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGF 257
Query: 278 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
GFV F ++A+RA+ +NG K YV AQ+K ER L+ ++ Q
Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 126 AIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 182
A T+F N ++V +LD + TD L FG+ GT+ + V RD +S +G+VNF N
Sbjct: 28 ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP 87
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
DAA+A++ LN + V + + + G N++IKNL
Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG----------------NIFIKNL 131
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
+SID + L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 191
Query: 303 KPLYVAVAQRKEER 316
K +YV R++ER
Sbjct: 192 KQVYVGPFLRRQER 205
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 306/563 (54%), Positives = 383/563 (68%), Gaps = 39/563 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A RA++ LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG
Sbjct: 102 AYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT 161
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ET 124
ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QER +
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDE 221
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+F NV+VKNL + +++L+K FG++G I+SAVVMRD G S+CFGFVNFE +
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
AA AVE +NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL D
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDD 341
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
S+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI KP
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKP 401
Query: 305 LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP-SGL-----------GQ 352
LY+A+AQRKE+RRA LQA FSQ+R PGP SG Q
Sbjct: 402 LYIALAQRKEDRRAHLQALFSQIR---------------APGPMSGFHHPPGGPMPGPPQ 446
Query: 353 QFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRG 409
GQ +++P Q G+G+Q Q +PGMRP P NF V P+ Q Q G R G RRG
Sbjct: 447 HMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRG 505
Query: 410 AGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGAGSMLPVPVDMGAGIPR 467
A VQQ Q +M H+ P G Y GRN D G + + I
Sbjct: 506 ATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISH 564
Query: 468 RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 527
+ A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E
Sbjct: 565 QKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAE 621
Query: 528 VLHLLESPEALKAKVAEAMEVLR 550
+LHL+ESPEALK+KV+EA++VLR
Sbjct: 622 ILHLMESPEALKSKVSEALDVLR 644
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
+++ +LD + L D F N++S ++ D + +S G+ ++ F N A A++ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N + D+ + + R+ + N+F+KNLD S ++ L + F +GTI S
Sbjct: 110 NYTPLFDRPIRI----MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ ER
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER-------- 217
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
A E + N+Y+KNL I +++L++ F +FG I+S VMRD SG S+ GFV
Sbjct: 218 --ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F E A+ A+ +MNG + LYV AQ+K ER L+ +F Q R
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 124 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNP 99
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA +A+EALN DR + + + KG N++IKNL
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNL 143
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 303 KPLYVAVAQRKEER 316
K ++V R++ER
Sbjct: 204 KQVFVGHFIRRQER 217
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/581 (53%), Positives = 402/581 (69%), Gaps = 26/581 (4%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A+RA++ LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFSSFG
Sbjct: 112 ASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT 171
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---E 123
ILSCK+A D G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R E
Sbjct: 172 ILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE 231
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+ A+ + F NV+VKNL + TD++LKK FG+YG I+SAVVM+D G S+ FGFVNF + +
Sbjct: 232 SGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 290
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AA AVE +NG + YVG+AQKKS+RE+EL+ +FEQ +K QG NLY+KNL
Sbjct: 291 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLD 350
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFVA+S PEEA A+ EMNGKMI K
Sbjct: 351 DSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRK 410
Query: 304 PLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP---MYPPGP--SGLGQQFLYG 357
PLYVA+AQRKEER+A LQ+ F+Q+R P M P VP M +PPG SG G
Sbjct: 411 PLYVALAQRKEERQAHLQSLFTQIRSPGTMSP-VPSPMSGFHHHPPGGPMSGPHHPMFIG 469
Query: 358 QAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGAGPVQ 414
++P Q G+GYQ Q +PGMRP P PNF + P+ Q Q G R G RRGA +Q
Sbjct: 470 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQ 528
Query: 415 QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPVDMGA---GIPRRDA 470
Q Q Q + +A R+ G + + A ++P+P++ A P+R +
Sbjct: 529 QQFQ------QQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQR-S 581
Query: 471 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 530
P+ I+ L++ LA ASP++ +LG+ LYPLVEQ E AAKVTGMLLEMDQ E+LH
Sbjct: 582 HKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILH 641
Query: 531 LLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 571
LLESPEALKAKV+EA++VLR A A + D +LS +E
Sbjct: 642 LLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 682
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 157/287 (54%), Gaps = 14/287 (4%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
++++ +LD S++ L D F+ + + ++ D + +S G+ +V F N E A A++ L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
N I D+ + + R+ + NVF+KNLD S ++ L + F +GTI S
Sbjct: 120 NYAPIRDRPIRI----MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 175
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
V D G+SK +GFV FE + A A++ LNG +D++ +VG ++ +R + G
Sbjct: 176 KVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESG-- 233
Query: 222 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 281
V F N+Y+KNL I D++LK+ F ++G I+S VM+D SG S+ GFV
Sbjct: 234 ------AVPSFT--NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 285
Query: 282 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
F +PE A+ A+ +MNG + LYV AQ+K +R L+ +F Q R
Sbjct: 286 FVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 332
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+E+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN DR + + + KG N++IKNL SID++ L
Sbjct: 119 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDASIDNKAL 162
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 312 RKEER 316
R+++R
Sbjct: 223 RRQDR 227
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 363/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 195 bits (495), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 362/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 192 bits (487), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 362/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/578 (45%), Positives = 362/578 (62%), Gaps = 43/578 (7%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP 466
+R A QT P P A P R + + + G + P P
Sbjct: 480 QRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQP 528
Query: 467 RRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
+ ++ QP P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 529 Q--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
LLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 262/575 (45%), Positives = 361/575 (62%), Gaps = 37/575 (6%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPP 361
KPLYVA+AQRKEER+A L Q+ Q P P P PSG + Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 362 AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGG 406
A PP Q + Q +PG +RPA AP P F + Q +
Sbjct: 421 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMST 479
Query: 407 RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLP---VPVDMG 462
+R A QT M PR A ++ P + AG P +
Sbjct: 480 QRVANTSTQT----------MGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQPQ 529
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
+ + V P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE
Sbjct: 530 VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLE 587
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 588 IDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust.
Identities = 269/594 (45%), Positives = 363/594 (61%), Gaps = 58/594 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E DE LK+ FG+YG S VM D GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F+ FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP- 361
KPLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PP
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPA 414
Query: 362 ----AIIPPQAGFGYQQQLVP-------GMRP------AG-----APMPNFFVPVVSQGQ 399
A PP G QL P G RP AG AP P F + Q
Sbjct: 415 QNRAAYYPP----GQIAQLRPSPRWTAQGARPHPFQNMAGAIRPSAPRPPTFSTMRPTSQ 470
Query: 400 QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRG----HAYRYPLG-RNMQDFPFDMGAGSM 454
+ +R A QT P P Y+Y G RN Q +M
Sbjct: 471 VPRVMSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQHLNTQPQVAM 530
Query: 455 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 514
V + GQ P+TA + LA A P++Q+ +LGE L+PL++ + A
Sbjct: 531 QQPAVHVQ----------GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAG 577
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 568
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA A ++ S +
Sbjct: 578 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA---HQAKEAAQKVVSAT 628
Score = 185 bits (470), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN G+ +DDE+LKE F ++G S KVM D
Sbjct: 177 KEREAELGARAKEFT----------NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G S+G GFV+F E+A +A+ +MNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/642 (41%), Positives = 358/642 (55%), Gaps = 114/642 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RALD LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 98 RALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 158 SCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D DE+ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQ 277
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 278 AAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDV 337
Query: 247 DDEKLKELFSEFGTITSCKVMRD------------------------------------- 269
DD+KL+ELF +GTITS KVMRD
Sbjct: 338 DDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKE 397
Query: 270 --------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+
Sbjct: 398 KEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 457
Query: 316 RRARLQAQFSQMRPV--------------AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
RR++L+A + M P+V Y PG G F+ G
Sbjct: 458 RRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV-----FYGPGQQG----FIPGAQRG 508
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---Q 418
+ PPQ G PG P P P GQQG RG GP QQ Q
Sbjct: 509 GMFPPQPGMMMGMPGRPGQYP--GPFP---------GQQGG-----RGVGPNQQIPPNFQ 552
Query: 419 PLPIMPHQMPPRGHAYRYPL---------------GRNMQDFPFDMGAGSMLPVPVDMGA 463
LP+ Q P + YP+ G G +P+ M
Sbjct: 553 GLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRP 612
Query: 464 GIPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 519
G R +VGQP P T + + AL+ A P+QQ+ +LGE+LYP ++ + + A K+TGM
Sbjct: 613 GQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGM 672
Query: 520 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
LLEMD TE+L LLE EAL+AKV EA+ V + +++ PA
Sbjct: 673 LLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 21/318 (6%)
Query: 15 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 74
N TP N + + + + + ++++ LD S+ L++ FSS G + S ++
Sbjct: 16 NGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 75 DG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 133
D + +S G+ +V + + + A+D+LN LI K + +R+ KT N
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTGQGN 131
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193
VF+KNLD + ++ L F +G I S V +D G SK +GFV++E A+ A A++ +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 194 GKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250
G +D++ +VG K +R+ +E+K F N+YIKN+ ++DE+
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVEDEE 238
Query: 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310
++LF +FG ITS + RD G S+G GFV FST E A A+ EMN K + S+ LYV A
Sbjct: 239 FRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 311 QRKEERRARLQAQFSQMR 328
Q+K ER L+ Q+ R
Sbjct: 299 QKKHEREEELRKQYEAAR 316
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/580 (44%), Positives = 353/580 (60%), Gaps = 49/580 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN + DE LK++FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDDE+L++ F FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP- 361
KPLYVA+AQRKEER+A L Q+ Q P+ P + Y P PS + PP
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVINPYQPPPSS----YFMAAIPPA 414
Query: 362 ----AIIPP--------------QAGFGYQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQ 402
A PP Q + Q +PG +RP P F + Q +
Sbjct: 415 QNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPR 474
Query: 403 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----YRYPLG-RNMQDFPFDMGAGSMLPV 457
+R A QT P P Y+Y G RN Q P
Sbjct: 475 VMSAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNTQPQVAMQQPA 534
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
G +P+ + L+ A P++Q+ +LGE L+PL++ + A K+T
Sbjct: 535 VHVQGQ----------EPLTASMLAAA----PPQEQKQMLGERLFPLIQAMHPTLAGKIT 580
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557
GMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 90
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 91 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 150
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 151 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
ERE EL + ++ N+YIKN GD ++DE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G SKG GFV+F E+A +A+ EMNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/601 (42%), Positives = 362/601 (60%), Gaps = 71/601 (11%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV----------------PPRMPM 342
KPLYVA+AQRKEER+A L Q+ Q MR + GP + PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLGSFQQPANYFLPAMPQPPNRTF 419
Query: 343 YPPGPSG---LGQQFLYGQA------PPA----IIPPQAGFGYQQQLVPGMRPAGAPMPN 389
Y P P Q+ Q+ PPA +PP+ + M+ A +P
Sbjct: 420 YSPNPVAPVRQAPQWTSHQSRPPQYQPPAPLMRAVPPRR----MSSNISTMKQASTQVPR 475
Query: 390 FFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFD 448
V Q+ G + Q + MPH Y+Y RN+Q +
Sbjct: 476 ----VAPHSQRVANIGTQTAGARAQVNPSIMRTMPH--------YKYSCAVRNVQPIGTN 523
Query: 449 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 508
++ V M GQ P+TA ++LA+A P++Q+ +LGE LYPL+ ++
Sbjct: 524 THLQQVMEPAVLMQ----------GQE-PLTA--SSLASAPPQEQKQMLGERLYPLIHEM 570
Query: 509 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 568
A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA + + A S
Sbjct: 571 HPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQS 627
Query: 569 L 569
L
Sbjct: 628 L 628
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/592 (43%), Positives = 355/592 (59%), Gaps = 53/592 (8%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D G S+G+GFV FE E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ F +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV----------------PPRMPM 342
KPLYVA+AQRKEER+A L Q+ Q MR + GP + PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLGSFQQPANYFLSAMPQPPNRTF 419
Query: 343 YPPGPSG----LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 398
Y P P Q + PP PP Q + + VP V+Q
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRRMSSNISTMKQASTQVPRVAQH 479
Query: 399 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPV 457
Q G + AG Q P M MP Y+Y G RN+Q ++
Sbjct: 480 SQRVANIGTQTAGARAQVN---PSMMRTMP----HYKYSCGVRNVQPIVSSTHLQQVMEP 532
Query: 458 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
V M GQ P+TA + LA A P++Q+ +LGE +YP++ ++ A K+T
Sbjct: 533 AVLMQ----------GQE-PLTA--SLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKIT 579
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 569
GMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENAQKSAQPSL 628
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LYI +L + + L E FS G I S +V RD + S ++ F P +A RAL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/567 (44%), Positives = 342/567 (60%), Gaps = 53/567 (9%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + +S RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG+IL
Sbjct: 102 RALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL 161
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCK+ TD +G+S+GF FV + E+A AI +NGML+NDK+V+VGH + K+ER +
Sbjct: 162 SCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEE 221
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ +F NV++KN+D TD + + + +G S + RD G SK FGFVN+EN + A
Sbjct: 222 LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESAR 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ Y G+AQ KSERE ELK E+ E K G+NLY+KNL D
Sbjct: 282 KAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEW 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F FGTITS KVMRD SG+S+G GFV +S+P+EA++A++EMNGKMI +KPLY
Sbjct: 342 DDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLY 401
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAM--GPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
VA+AQRK+ RR L++Q +Q M G PG G Q +YG
Sbjct: 402 VALAQRKDVRRQALESQIAQRAQQRMQYGAGF--------PGMQGYMGQPMYG------Y 447
Query: 365 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP--I 422
PP G+G Q +PGM P PM + P Q RP QPLP +
Sbjct: 448 PPMPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQSRPR-------FNPNGQPLPGGV 495
Query: 423 MPHQMPPR-------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
+ MPP+ G+ R P G + P G + P PV G+P G
Sbjct: 496 PAYGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQ 554
Query: 476 MPITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
MP A LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLE
Sbjct: 555 MPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLE 614
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVL 549
MD E+LHL+ES AL+ KV EA+ VL
Sbjct: 615 MDNAELLHLVESQPALQEKVDEALRVL 641
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + +Q+ + A+++T QG N++IKNL SID++ L
Sbjct: 107 LNYSLIKGQSCRIMWSQR------------DPALRKT---GQG-NIFIKNLDQSIDNKAL 150
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Query: 312 RKEERRAR---LQAQFSQM 327
K+ER ++ L+AQF+ +
Sbjct: 211 GKKERLSKVEELRAQFTNV 229
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/567 (44%), Positives = 342/567 (60%), Gaps = 53/567 (9%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++ + +S RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG+IL
Sbjct: 102 RALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL 161
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCK+ TD +G+S+GF FV + E+A AI +NGML+NDK+V+VGH + K+ER +
Sbjct: 162 SCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEE 221
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
++ +F NV++KN+D TD + + + +G S + RD G SK FGFVN+EN + A
Sbjct: 222 LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESAR 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ Y G+AQ KSERE ELK E+ E K G+NLY+KNL D
Sbjct: 282 KAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEW 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD++L+ F FGTITS KVMRD SG+S+G GFV +S+P+EA++A++EMNGKMI +KPLY
Sbjct: 342 DDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLY 401
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAM--GPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 364
VA+AQRK+ RR L++Q +Q M G PG G Q +YG
Sbjct: 402 VALAQRKDVRRQALESQIAQRAQQRMQYGAGF--------PGMQGYMGQPMYG------Y 447
Query: 365 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP--I 422
PP G+G Q +PGM P PM + P Q RP QPLP +
Sbjct: 448 PPMPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQSRPR-------FNPNGQPLPGGV 495
Query: 423 MPHQMPPR-------GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 475
+ MPP+ G+ R P G + P G + P PV G+P G
Sbjct: 496 PAYGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQ 554
Query: 476 MPITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 522
MP A LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLE
Sbjct: 555 MPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLE 614
Query: 523 MDQTEVLHLLESPEALKAKVAEAMEVL 549
MD E+LHL+ES AL+ KV EA+ VL
Sbjct: 615 MDNAELLHLVESQPALQEKVDEALRVL 641
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + + +Q+ + A+++T QG N++IKNL SID++ L
Sbjct: 107 LNYSLIKGQSCRIMWSQR------------DPALRKT---GQG-NIFIKNLDQSIDNKAL 150
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Query: 312 RKEERRAR---LQAQFSQM 327
K+ER ++ L+AQF+ +
Sbjct: 211 GKKERLSKVEELRAQFTNV 229
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 269/634 (42%), Positives = 357/634 (56%), Gaps = 105/634 (16%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 111 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 170
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+AQNAI +NGML+NDK+VFVGH + K++R++
Sbjct: 171 SCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEE 230
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F NV+VKN+D+ TT+E+ + +F ++G ITSA + RD + GKS+ FGFVNF + D+A
Sbjct: 231 MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNA 290
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
A AVEALN K F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D
Sbjct: 291 AAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 350
Query: 246 IDDEKLKELFSEFGTITSCKVMRD------------------------------------ 269
IDDEKL+ELFS +GTITS KVMRD
Sbjct: 351 IDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAE 410
Query: 270 -----------------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQR
Sbjct: 411 NKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQR 470
Query: 313 KEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ-A 368
K+ RR++L+A + +R + P P YG IP Q
Sbjct: 471 KDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPA-------VFYGPGQQNFIPNQRG 523
Query: 369 GFGYQQ--QLVPGMRPAGAPM---------------PNFFVPVVSQGQQGQR-PGGRRGA 410
G +QQ ++PGM P G PN +P + G Q P G +GA
Sbjct: 524 GMPFQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPMGMQGA 582
Query: 411 GPVQQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQDFPFDMGAGSML--PVPVDMGAGIPR 467
G P M P G + P G+ M MG G +PV G G P
Sbjct: 583 GIPNGLN--YPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPG 640
Query: 468 RDASVGQPMPITALSTALANASPE-------------QQRTLLGESLYPLVEQLERDAAA 514
+ A GQ P A+ NASP QQ+ +LGE++YP ++ + + A
Sbjct: 641 Q-AGRGQGAPAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAG 699
Query: 515 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 700 KITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 295 MNGKMIVSKPLYVAVAQR 312
+N +I +P + +QR
Sbjct: 116 LNYTLIKGRPCRIMWSQR 133
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/594 (43%), Positives = 355/594 (59%), Gaps = 57/594 (9%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G+ILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F NV++KN E D+ LK+IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 303 KPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ Q MR + +G P P P + F
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAF- 419
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-------------------VVS 396
Y P A + P + Q P +P AP+ P V
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQPP-APLMRAVPPRRMHSNISTMKQASTQVPRVPL 478
Query: 397 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSML 455
Q Q+ G + Q + MPH Y+Y G RN+Q +L
Sbjct: 479 QSQRVANIGTQTAGARAQVNASIMRAMPH--------YKYSCGVRNVQPIGSSAHLQQVL 530
Query: 456 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 515
V M GQ P+TA + LA A ++Q+ +LGE +YPL+ ++ A K
Sbjct: 531 EPAVLMQ----------GQE-PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGK 577
Query: 516 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 569
+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 578 ITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKESAPKSAPQSL 628
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 225 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 283
M T ++ +LYI +L + + L E FS G I S +V RD + S G ++ F
Sbjct: 1 MNATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQ 60
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312
P +A RAL MN ++I +P+ + +QR
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRIMWSQR 89
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/558 (44%), Positives = 342/558 (61%), Gaps = 29/558 (5%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 303 KPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGPSVPPRMPMYPPGPSGLGQQFL 355
KPLYVA+AQRKEER+A L Q+ S MR ++ +G P P P Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 356 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ--GQRPGGRRGAGPV 413
YG P + P Q + Q RP+ A M V R + V
Sbjct: 421 YGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 414 QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 473
TQ+ I P G P GR + A S V + IP ++
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAHSTYRVQ-EPAVHIPGQE---- 529
Query: 474 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 533
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LE
Sbjct: 530 ---PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLE 584
Query: 534 SPEALKAKVAEAMEVLRS 551
SPE+L AK+ EA+ VL++
Sbjct: 585 SPESLHAKIDEAVAVLQA 602
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 295 MNGKMIVSKPLYVAVAQR 312
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/559 (44%), Positives = 339/559 (60%), Gaps = 47/559 (8%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ +ALD LN+T + + RIM+S RDPS+RK GTGN+FIKNLD +ID+KALHDTFS+
Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSA 190
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCK+A D G +KG+GFV F++ ESA AI+ +NGML+NDK+V+VGH + ++ER+
Sbjct: 191 FGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQ 250
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ A+K F NV++KNLD T+++ +FG++G ITS +++D + K + FGFVN+ N
Sbjct: 251 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ ++EQ E ++K+QG+NL+IKN
Sbjct: 311 HECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKN 370
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D +DDE+LK FS FGTITS K+M D G SKG GFV ++TPEEA++A+ EMN +M+
Sbjct: 371 LQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
Query: 302 SKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 358
KPLYVA+AQRKE RR++L+AQ +Q R L QQ
Sbjct: 431 GKPLYVALAQRKEVRRSQLEAQIQARNQFR---------------------LQQQVAAAA 469
Query: 359 APPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 418
PA+ +G L+ G P G P +P G+ G G P+
Sbjct: 470 GIPAV-----QYGATGPLIYG--PGGYP-----IPAAVNGRGMPMVPGHNGPMPM----- 512
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP-MP 477
P MP Q P G A YP G N + G M+P V AG +A P MP
Sbjct: 513 -YPGMPTQFPAGGPAPGYP-GMNARGPVPAQGRPMMMPGSVP-SAGPAEAEAVPAVPGMP 569
Query: 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 537
+ LA E ++ +LGE LYP V E + K+TGMLLEM +E+L LLE A
Sbjct: 570 ERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSA 629
Query: 538 LKAKVAEAMEVLRSVAQQQ 556
L +V EA+ VL+ Q+
Sbjct: 630 LNERVNEAIGVLQEFVDQE 648
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 165/313 (52%), Gaps = 21/313 (6%)
Query: 17 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG 76
TP N S+ PS + ++++ LD S+ L + F+S G + S ++ D
Sbjct: 62 TPTNASSVAT------PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDA 115
Query: 77 -SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVF 135
+ +S G+ +V F N E + A+D+LN LI + + +R+ K NVF
Sbjct: 116 VTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI----MWSQRDPSLRKMGTGNVF 171
Query: 136 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195
+KNLD + ++ L F +G I S V D G +K +GFV+F++ + A A+E +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 231
Query: 196 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 255
+D++ YVG + ER+ ++ +A+K N+YIKNL I +++ +LF
Sbjct: 232 LLNDKKVYVGHHVSRRERQSKV-----EALKANF-----TNVYIKNLDTEITEQEFSDLF 281
Query: 256 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
+FG ITS +++D + +G GFV ++ E A +A+ E+N K K LYV AQ+K E
Sbjct: 282 GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHE 341
Query: 316 RRARLQAQFSQMR 328
R L+ ++ QM+
Sbjct: 342 REEELRKRYEQMK 354
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust.
Identities = 264/640 (41%), Positives = 362/640 (56%), Gaps = 125/640 (19%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 104 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 164 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KNLD+ ++E+ +++F ++G ITSA + RD +GKS+ FGFVN+ D A
Sbjct: 224 MKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQ 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D I
Sbjct: 284 AAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDI 343
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+E+F+ +GTITS KVMRD +
Sbjct: 344 DDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKES 403
Query: 272 ----------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 315
G SKG GFV FS+P+EAS+A+ EMN +MI KPLYVA+AQRK+
Sbjct: 404 GDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDV 463
Query: 316 RRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII--PPQAGFGYQ 373
RR++L+A + + +G+ Q ++ PA+ P Q GF
Sbjct: 464 RRSQLEASIQARNTIRQQQAAA---------AAGMPQPYMQ----PAVFYGPGQQGF--- 507
Query: 374 QQLVPGMRPAG---APMPNFFVPVVSQGQQGQRPG------GRRGAGPVQQT----QQPL 420
+PG + G AP P + V G+ GQ PG G RG GP QQ Q +
Sbjct: 508 ---IPGGQRGGLPFAPQPGMMMGVPG-GRPGQYPGPFPGQQGGRGMGPNQQIPPNFAQGI 563
Query: 421 PIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAG------------I 465
P+ M P G + YP M F GAG VP + MG G +
Sbjct: 564 PM--GAMGPGGIPNGMGYP---QMGQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGV 618
Query: 466 PRRD----------------ASVGQPMPITALST-ALANASPEQQRTLLGESLYPLVEQL 508
P + A G+ P L+ +LA A QQ+ +LGE+LYP ++
Sbjct: 619 PVQGQMRPGQGGRGQNAQPAAGRGEEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQ 678
Query: 509 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
+ + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 679 QPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSV 718
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N + A+
Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 106
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 107 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNI 162
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K +R+ +
Sbjct: 163 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 222
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKNL I +E+ +++F +FG ITS + RD G S+
Sbjct: 223 EMKANF-------------TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSR 269
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV +ST + A A+ EMN K + + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAAR 322
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/576 (43%), Positives = 351/576 (60%), Gaps = 40/576 (6%)
Query: 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 66
A ALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGN
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 67 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV- 125
ILSC + D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 126 -AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 305 LYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPPRMPMYPPGPSGLGQQFLYGQAPP 361
LYVA+AQRKEER+A L ++ Q M V P+ PP P Y +
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQI 422
Query: 362 AIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ 414
A + P + Q Q +RP GAP F + Q + +R A
Sbjct: 423 ARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFSTMRPASSQVPRVMSTQRVANTST 481
Query: 415 QTQQPLPIMPH--------QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGI 465
QT P P + PR Y+Y G RN Q +M + V +
Sbjct: 482 QTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQ--- 535
Query: 466 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 525
GQ T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D
Sbjct: 536 -------GQE---TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDN 585
Query: 526 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 586 SELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 18/299 (6%)
Query: 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 89
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNFQ 60
Query: 90 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 149
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 150 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 269
+ ERE EL + ++ N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 262/631 (41%), Positives = 355/631 (56%), Gaps = 108/631 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 107 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 166
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 167 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDE 226
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N+++KN+D T+E+ +KIF ++G ITSA + RD +GKS+ FGFVN+ + A
Sbjct: 227 MKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQ 286
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ ++ K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 287 AAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 346
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+ELF +GTITS KVMRD +
Sbjct: 347 DDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPK 406
Query: 272 ------------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK
Sbjct: 407 ESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
Query: 314 EERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPPQ 367
+ RR++L+A + + P+ M P G GQQ GQ PQ
Sbjct: 467 DVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQ 526
Query: 368 AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIMP 424
G +PG RP P P P GQQG RG GP QQ Q +P+
Sbjct: 527 PGM---VMGIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQMPPNFQGIPMGA 571
Query: 425 HQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP--------------- 466
Q P P G Y +G+ F G G + +P+ G P
Sbjct: 572 MQGPGGIPNGMGYPQAMGQ--VQFGRGGGRGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQ 629
Query: 467 --RRDASVGQP------MPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 517
R + QP P AL+ AL A+P QQ+ +LGE+LYP ++ + + A K+T
Sbjct: 630 GGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKIT 689
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
GMLLEMD TE+L LLE +AL+AKV EA+ V
Sbjct: 690 GMLLEMDNTELLGLLEDDDALRAKVDEALSV 720
Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 159/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N + A+
Sbjct: 50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 109
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+ LN LI K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 110 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 165
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ--- 215
S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K +R+
Sbjct: 166 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFD 225
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ + +E+ +++F +FG ITS + RDP G S+
Sbjct: 226 EMKANF-------------TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSR 272
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV +ST E A A+ EM+ K + ++ LYV AQ+K ER L+ Q+ R
Sbjct: 273 GFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAAR 325
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 250/630 (39%), Positives = 353/630 (56%), Gaps = 107/630 (16%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF++FGNIL
Sbjct: 116 KALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNIL 175
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 176 SCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE 235
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+VKN++ TDE+ +++F ++G +TS+ + RD +GKS+ FGFVNF + AA
Sbjct: 236 MKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAA 295
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
+AV+ LNGK F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNLGD +
Sbjct: 296 QAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDV 355
Query: 247 DDEKLKELFSEFGTITSCKVMRDP------------------------------------ 270
DD+KL+ +FSE+G ITS KVMRD
Sbjct: 356 DDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEK 415
Query: 271 -----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325
G SKG GFV FS P++A++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A
Sbjct: 416 KGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQ 475
Query: 326 QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGA 385
+ M + +G+ QQ++ QAP Q GF PG R G
Sbjct: 476 ARNQLRMQQAA---------AQAGMPQQYM--QAPVYYAGQQPGF----MPAPGGR--GV 518
Query: 386 PMP-NFFVPVVSQGQQGQRP---GGRRGAGPVQQTQQPLPIM---PHQMPPRGHAYRYPL 438
P P VP V G+ GQ P GGR G P Q PI P PP Y +
Sbjct: 519 PFPQGGIVPGVQGGRPGQYPYQQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAM 578
Query: 439 GRNMQD------------------FPFDMGAGSMLP------VPVDMGA-GIPRRDASV- 472
G+ P + G +P P + G G PR +A+
Sbjct: 579 GQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNANFM 638
Query: 473 ----------GQPMPITA---LSTALANA-SPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
G P ++A L LA P+ Q+ ++GE+L+P ++ ++ A K+TG
Sbjct: 639 AAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITG 698
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
MLLEMD E+++L E AL KV EA+ V
Sbjct: 699 MLLEMDNAELINLFEDDNALNVKVQEALAV 728
Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 161/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT N+F+KNLD + ++ L F +G I
Sbjct: 119 EELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNI 174
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 175 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 234
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + + DE+ +ELF++FG +TS + RD G S+
Sbjct: 235 EMKANF-------------TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSR 281
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 282 GFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 269/632 (42%), Positives = 352/632 (55%), Gaps = 112/632 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 108 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 167
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 168 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 227
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+D+ TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF D A
Sbjct: 228 MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQ 287
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 288 AAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 347
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+ELFS FGTITS KVMRD
Sbjct: 348 DDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKES 407
Query: 272 ------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++
Sbjct: 408 EEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 467
Query: 320 LQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPPQAGFGYQ 373
L+A + + P+ M P G GQQ GQ PQ G
Sbjct: 468 LEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM--- 524
Query: 374 QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQMP-- 428
+PG RP P P P GQQG RG GP QQ Q +P+ Q P
Sbjct: 525 VMGIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFQGIPMGAMQGPGG 572
Query: 429 -PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGIPRRDASVG------------- 473
P G Y M F GAG VP + MG GI G
Sbjct: 573 IPNGMGY-----PQMAQVQFGRGAGGRGQVPGMPMGQGIRGPGYGQGRGGAPVQGGPRPQ 627
Query: 474 ---------------QPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
+ +P T TA L+ P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 628 GGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKI 687
Query: 517 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
TGMLLEMD E+L LLE EAL+AKV EA+ V
Sbjct: 688 TGMLLEMDNNELLGLLEDEEALRAKVDEALSV 719
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+YIKN+ + DE+ +++F +FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G S+G GFV FST + A A+ EMN K I + LYV AQ+K ER L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 269/630 (42%), Positives = 352/630 (55%), Gaps = 110/630 (17%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 108 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 167
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 168 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 227
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+D+ TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF D A
Sbjct: 228 MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQ 287
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 288 AAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 347
Query: 247 DDEKLKELFSEFGTITSCKVMRDPS----------------------------------- 271
DDEKL+ELFS FGTITS KVMRD
Sbjct: 348 DDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEE 407
Query: 272 ----------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 321
G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+
Sbjct: 408 EAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLE 467
Query: 322 AQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLY--GQAPPAIIPPQAGFGYQQQ 375
A + + P+ M P G GQQ GQ PQ G
Sbjct: 468 ASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM---VM 524
Query: 376 LVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQMP---P 429
+PG RP P P P GQQG RG GP QQ Q +P+ Q P P
Sbjct: 525 GIPGGRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFQGIPMGAMQGPGGIP 572
Query: 430 RGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGIPRRDASVG--------------- 473
G Y M F GAG VP + MG G+ G
Sbjct: 573 NGMGY-----PQMAQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGAPVQGGPRPQGG 627
Query: 474 -------------QPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 518
+ +P T TA L P QQ+ +LGE+LYP ++ + + A K+TG
Sbjct: 628 RGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITG 687
Query: 519 MLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
MLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 688 MLLEMDNTELLGLLEDEEALRAKVDEALSV 717
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
PS + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+YIKN+ + DE+ +++F +FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G S+G GFV FST + A A+ EMN K I + LYV AQ+K ER L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/558 (45%), Positives = 356/558 (63%), Gaps = 40/558 (7%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RA++ LN++ + N+ RIM+S RDP++R++G GNIFIKNLD ID+KALHDTF++FGNIL
Sbjct: 103 RAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNIL 162
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
SCK+AT+ +G S G+GFV +E E+A+ AI +NGML+NDK+V+VGH + ++ER+ +
Sbjct: 163 SCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEE 221
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
T+ F NV+ KN+D TD++ +K+F ++G ITS V+ RD DGKSK FGFVNFE+ ++A
Sbjct: 222 TRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQ 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ L+ F ++ +V +AQKKSERE+EL+ +E A E + KFQG+NLY+KN+ +S
Sbjct: 282 KAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESY 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDE+L+E F+ FG ITSCK+MR PSG+S+G GFV +S PEEA++A++EMNGKM+ ++PLY
Sbjct: 342 DDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLY 401
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
VA+AQRK+ RR +L+AQ Q + + + YP G Y Q P P
Sbjct: 402 VALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYP------GPGMYYPQ--PGAFPG 453
Query: 367 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 426
Q G +VP R A A M +P+ GQ GQ P AG + Q +P
Sbjct: 454 QPG-----GMVPRPRYAPAGMMPQGMPMAPYGQPGQFP-----AGMMPQGYRPA------ 497
Query: 427 MPPRGHAYRYPLGRNMQDFPFDMGAGSM-----LPVPVDMGAGIPRRDAS--VGQP---M 476
PPRG G PVP G +PR A+ G+P
Sbjct: 498 RPPRGAPNAAGGPAPPAGARPPTGVNGAPRPAGQPVP---GQPMPRGPAARPAGRPEADQ 554
Query: 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 536
P + ALA ASPE+Q+ +LGE++YP V + + A K+TGM+LE+ TE+LHLLE E
Sbjct: 555 PGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESE 614
Query: 537 ALKAKVAEAMEVLRSVAQ 554
AL AKV EA+EVL+ Q
Sbjct: 615 ALDAKVNEALEVLKEYQQ 632
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L +IF GT+ S V RD +S + +VNF NA D +A+E
Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN +R + +Q+ + A++ T QG N++IKNL ID++ L
Sbjct: 108 LNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFIKNLDAGIDNKAL 151
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV + +G S G GFV + T E A A+ +NG ++ K +YV
Sbjct: 152 HDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHI 210
Query: 312 RKEERRARLQ---AQFSQMRPVAMGPSV 336
++ER+A+++ A F+ + + P V
Sbjct: 211 PRKERQAKIEETRANFTNVYAKNVDPEV 238
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 214 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SG 272
EQ G EQ + D +LY+ L S+ + L E+FS GT+ S +V RD +
Sbjct: 28 EQPAVGNGEQ--RNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTR 85
Query: 273 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
S G +V F + RA+ ++N +I ++P + +QR
Sbjct: 86 RSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQR 125
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 245/554 (44%), Positives = 320/554 (57%), Gaps = 58/554 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A RALD LN TP+ K+ RIM+S RDPS+RKSG GN+FIKNLDK IDHKAL+DTFS+F
Sbjct: 62 ADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAF 121
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ TD SKGFGFV +E +ESA AI K+NGM+IN ++VFVG F +ER
Sbjct: 122 GNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQ 181
Query: 125 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 184
+ KF NVF KNL E + LK++ +YG IT+ +M D GKSK FGF NFE+A+
Sbjct: 182 -PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEA 240
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
A VE NGK F + Y G+AQKK ERE ELK FE K+QG+NLYIKN+ D
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDD 293
Query: 245 SIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
SID++KL+E+FS+FGTITS VM+D + SKG GFV ++ P+EA+RA+ EMNG+MI +K
Sbjct: 294 SIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTK 353
Query: 304 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
PLYVA+AQRK+ RRA+L+ Q Q + +PP Y GP PA
Sbjct: 354 PLYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPP---TYGSGPVFF---------TPAP 401
Query: 364 IPPQAGFGYQQQLVPGMR-----PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 418
+ PQ + QQ++P R P G P + ++GQ R GP Q Q
Sbjct: 402 VNPQVVY---QQMMPRPRNWNGQPVGVPQGQYANMNYARGQP-------RQNGPRQNGGQ 451
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 478
P Q PR D+ +PV + + +
Sbjct: 452 P-----RQNGPRP----------------DVSGAQPIPVQQQTTLDVAQTQQAASSAESA 490
Query: 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVLHLLESPEA 537
L + + S +QQ LGE LYPL+ + D A K+TGMLL+ + E+ L + +
Sbjct: 491 LNLQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDL 550
Query: 538 LKAKVAEAMEVLRS 551
L K+ EA+EVL S
Sbjct: 551 LADKIREALEVLGS 564
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAE 294
+LY+ +L + ++ L E+F++ G +++ +V RD + S +V + +A RAL
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 295 MNGKMIVSKPLYVAVAQRKEERR 317
+N I K + +QR R
Sbjct: 71 LNNTPIRGKACRIMWSQRDPSLR 93
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 240/574 (41%), Positives = 334/574 (58%), Gaps = 56/574 (9%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L +A++ LN+TP+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+
Sbjct: 118 LEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSA 177
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ATD GQSK FGFV +E +E+AQ AI+ +NGML+ND++V+VG + K++RE
Sbjct: 178 FGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRE 237
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ +K + N++VKN+D + T+++ +++F +G ITS + +D +GKSK FGFVNFE
Sbjct: 238 SKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEE 297
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ AAKAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL++KN
Sbjct: 298 HEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKN 357
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L + ID EKL+E F FGTITS KVM D +G SKG GFV FSTPEEA++A+ EMN +M+
Sbjct: 358 LDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVN 417
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YG 357
KPLYVA+AQRK+ RR++L+ Q + M + GL QF+ YG
Sbjct: 418 GKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA---------AAGGLPGQFMPPMFYG 468
Query: 358 QAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAG 411
Q PP G PG MR G P P +Q RPG
Sbjct: 469 QQ--GFFPPN---GRGNAPFPGPNPQMMMRGRGQPFP----------EQWPRPG------ 507
Query: 412 PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS 471
QP+P+ + MPP+ + G+NM+ P R A
Sbjct: 508 ---PNGQPVPV--YGMPPQFQDFN---GQNMRPQQQQQQQQQQQQQQQQQRGYYPNRPA- 558
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTE 527
G +P L+ +ANA E Q+ +LGE LY + + E +AA K+TGM+L ++ E
Sbjct: 559 -GGNVPAKDLAALIANAPLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMMLGLENQE 617
Query: 528 VLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 561
+L LL+ E EA+ + N A
Sbjct: 618 ILDLLDDEELFNNHFEEALNAFEEYKNSEGANAA 651
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 177
+++ E+ I +++V L+ S + L +IF G + S V RD KS + +V
Sbjct: 54 EEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYV 113
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 114 NYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDG----------------NI 157
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+IKNL +ID++ L + FS FG I S KV D G SK GFV + T E A A+ +NG
Sbjct: 158 FIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNG 217
Query: 298 KMIVSKPLYVAVAQRKEERRARLQ 321
++ + +YV K++R ++L+
Sbjct: 218 MLLNDREVYVGKHVSKKDRESKLE 241
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 239/553 (43%), Positives = 333/553 (60%), Gaps = 58/553 (10%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
+ +A++ LN++P+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+
Sbjct: 103 MEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFST 162
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILSCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE
Sbjct: 163 FGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE 222
Query: 124 TV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 181
+ IK F N++VKN+D ++EDLKK+F YG ITS + +D +GKSK FGFVN+E
Sbjct: 223 SKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEG 282
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL+IKN
Sbjct: 283 HEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKN 342
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L D+ID EKL+E F FGTITS +VM D +G SKG GFV FS+PEEA++A+ EMN +M
Sbjct: 343 LDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFF 402
Query: 302 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
KPLYVA+AQRK+ RR++L+ Q + M + G P
Sbjct: 403 GKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAT------------------GGIPG 444
Query: 362 AIIPPQAGFGYQQQLVP----GMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 417
IPP F QQ P G P P P ++ +GQ P GP
Sbjct: 445 QFIPPM--FYGQQGFFPPNGRGNAPFPGPNPQM---IMRRGQPFGGPEQWPRPGP---NG 496
Query: 418 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 477
QP+P+ + +PP+ AY G+N++ P R+ + G+
Sbjct: 497 QPVPV--YGIPPQ--AYSDFNGQNIRQ----------------QRGYYPNRNQNKGRQQ- 535
Query: 478 ITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLE 533
L+ +A+A P+QQ+ +LGE LYP + + E +AA K+TGM+L++D E+L LLE
Sbjct: 536 -RDLAAIIASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLE 594
Query: 534 SPEALKAKVAEAM 546
E +A+
Sbjct: 595 DDELFTNHFEDAL 607
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ S + L +IF G ++S V RD KS + +VN+ +D KA+E
Sbjct: 53 SLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEE 112
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 113 LNYSPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKNLHPAIDNKAL 156
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 157 HDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHI 216
Query: 312 RKEERRARLQ 321
K++R ++ +
Sbjct: 217 SKKDRESKFE 226
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/556 (42%), Positives = 332/556 (59%), Gaps = 61/556 (10%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ +RA++ LN++ ++ + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTFS+F
Sbjct: 110 ADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAF 169
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
G ILSCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 170 GRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRES 229
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F NV+VKNL + ++IF +G +TS + D +GKS+ FGFVNFEN
Sbjct: 230 KFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENH 289
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ A AV+ +N K+ D ++ YVG+AQKK ER ELK +E E + K+QG+NL++KNL
Sbjct: 290 ESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNL 349
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302
DSID EKL+E F FGTITS +VM D +G SKG GFV FS+PEEA++A+ EMN +MI
Sbjct: 350 DDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQG 409
Query: 303 KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YGQ 358
KPLYVA+AQRK+ RR++L+ Q + M + +G+ QF+ YGQ
Sbjct: 410 KPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA---------AAAGMPGQFMSPMFYGQ 460
Query: 359 APPAIIPPQAGFGYQQQLVPG---MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 415
P PP G Q P M P G MP QGQ P AGP
Sbjct: 461 Q-PGFFPPNGRGGAQGPFPPNPQMMMPRGGQMP---------PPQGQWP----RAGP--- 503
Query: 416 TQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ 474
QP+P+ + MPP G + P G+ Q GA P R+ G+
Sbjct: 504 NGQPVPV--YGMPPVYGGEFNGPNGQRQQ-----------------RGAYPPNRNQKGGR 544
Query: 475 PMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLH 530
P L+ ++ +QQ+ +LGE LYP + + E +AA K+TGM+L+++ E+L
Sbjct: 545 PQ--RDLAAIISTVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILA 602
Query: 531 LLESPEALKAKVAEAM 546
LLE E + +A+
Sbjct: 603 LLEDDELFENHFEDAL 618
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 192
++V L+ S + L +IF G ++S V RD KS + +VNF D ++A+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252
N D R + +Q+ + G N++IKNL +ID++ L
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKALH 163
Query: 253 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 164 DTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 313 KEERRAR---LQAQFSQMRPVAMGPSV 336
K +R ++ ++A F+ + + P V
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEV 250
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/559 (42%), Positives = 332/559 (59%), Gaps = 76/559 (13%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN++ + + RIM+S RDPS+R++G GNIFIKNL +ID+KALHDTF++FG IL
Sbjct: 107 KAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKIL 166
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD G SK FGFV +E E+A+ AI+ +NGML+ND++V+VG + K++RE+
Sbjct: 167 SCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEE 226
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV+ KN+D ++E+ KK+F YG ITS + +D +GKSK FGFVNFEN + A
Sbjct: 227 MKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAV 286
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL+IKNL D+I
Sbjct: 287 KAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTI 346
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FG+ITS +VM D +G SKG GFV FS+PEEA++A+ EMN +MI KPLY
Sbjct: 347 DSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLY 406
Query: 307 VAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 361
VA+AQRK+ RR++L+ Q +M+ A +P + PP YGQ P
Sbjct: 407 VALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQ--FIPP--------MFYGQQ-P 455
Query: 362 AIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ----QGQRPGGRRGAGPVQQTQ 417
PP G P P P +P +GQ QGQ P GP
Sbjct: 456 GFFPPNG---------RGNGPFPGPNPQMMMP---RGQIPPPQGQWP----RPGP---NG 496
Query: 418 QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG------SMLPVPVDMGAGIPRRDAS 471
QP+P+ + MPP + F+ GA P G ++D
Sbjct: 497 QPVPV--YGMPP------------VYGGDFNNGANGGRQQRGYYPNRNQNQKGRQQKD-- 540
Query: 472 VGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTE 527
L+ +ANA +QQ+ +LGE LYP + + E +AA K+TGM+L++D E
Sbjct: 541 ---------LAAIIANAPADQQKRILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNEE 591
Query: 528 VLHLLESPEALKAKVAEAM 546
+L LLE E +A+
Sbjct: 592 ILALLEDDELFNTHFEDAL 610
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V L+ S + L +IF G + S V RD KS + +VNF +D KA+E
Sbjct: 52 SLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIED 111
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 112 LNYSLIEGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKAL 155
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV D GISK GFV + T E A A+ +NG ++ + +YV
Sbjct: 156 HDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHI 215
Query: 312 RKEERRARLQ 321
K++R ++ +
Sbjct: 216 SKKDRESKFE 225
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP- 270
E EQ G+ E+A +LY+ L S+++ L E+FS G + S +V RD
Sbjct: 28 ETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAV 87
Query: 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ S G +V F E+ +A+ ++N +I +P + +QR
Sbjct: 88 TKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQR 129
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/403 (49%), Positives = 276/403 (68%), Gaps = 35/403 (8%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+T + K RIM+S RDPS+RK G+GNI+IKNL +ID+K+LH+TFS+FGNIL
Sbjct: 94 KAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD +G S+GFGFV FEN+ A++AI+ ++GML+ND++V+V + K++R++
Sbjct: 154 SCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEE 213
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K KF NV+VKN+D+ T+ E+ +++FG+YG ITSAV+ +D +GK + FGFVNFE+ AA
Sbjct: 214 VKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAA 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAV+ LN +F ++ YVG+AQKK ER QELK Q+E A E + K+QG+NL++KNL DSI
Sbjct: 274 KAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSI 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKLKE F+ FGTITS KVMRD +G S+G GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR----------------------PVAMGPSVPPRMP 341
VA+AQRKE RR +L Q +QMR P+ G +PPR+P
Sbjct: 394 VAIAQRKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPPMYYG-GIPPRVP 452
Query: 342 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG 384
P P + G +PPQ FG + G P G
Sbjct: 453 FQGPNPQ------MAGMPKNGAMPPQQ-FGRPGPMYGGFAPQG 488
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 179
E ET ++T +++V L+ + ++ L IF G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239
+ + KA+E LN + + +Q+ ++ G N+YI
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG----------------NIYI 130
Query: 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299
KNL +ID++ L E FS FG I SCKV D +G+S+G GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 300 IVSKPLYVAVAQRKEERRARLQ 321
+ + +YVA+ K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 497 LGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
LGE LY V +D AA K+TGM+L++ +V+ LLE+ E L+ EA
Sbjct: 508 LGEQLYQKVFAKTQDDEAAGKITGMILDLPPQQVIQLLENDELLEQHFQEA 558
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 241/577 (41%), Positives = 338/577 (58%), Gaps = 75/577 (12%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+ P+ + RIM+S RDPS R+SG GNIFIKNL +ID+KALHDTFS+FG IL
Sbjct: 108 KAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 167
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFVG + K++RE+
Sbjct: 168 SCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEE 227
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D + ++E +K+F +G ITS + +D DGKSK FGFVNFE+ + A
Sbjct: 228 MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAV 287
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K+QG+NL++KNL D+I
Sbjct: 288 KAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTI 347
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
D EKL+E F FGTITS KVM D +G SKG GFV F+TPEEA++A+ EMN +MI KPLY
Sbjct: 348 DSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLY 407
Query: 307 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL----YGQAPPA 362
VA+AQRK+ RR++L+ Q Q R +M M GL QF+ YGQ
Sbjct: 408 VALAQRKDVRRSQLEQQI-QAR---------NQMRMQNAAAGGLPGQFIPPMFYGQQ--G 455
Query: 363 IIPPQAGFGYQQQLVPG------MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT 416
PP G PG MR G P P +Q RPG
Sbjct: 456 FFPPN---GRGNAPYPGPNPQMMMRGRGQPFP----------EQWPRPG---------PN 493
Query: 417 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM----GAGIPRRDASV 472
QP+P+ + +PP+ F D +M P G P R+ +
Sbjct: 494 GQPVPV--YGIPPQ--------------FQQDFNGQNMRPQQQQQQQPRGGYYPNRNQTS 537
Query: 473 GQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEV 528
+ L+ +++ +QQ+ +LGE LYP + + E +AA K+TGM+L ++ E+
Sbjct: 538 KRD-----LAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEI 592
Query: 529 LHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 565
L LL+ E +A+ + +A A++ A
Sbjct: 593 LDLLDDDELFNNHFEDALTAFEEYKKSEAAGNAEEQA 629
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 177
+++ E+ + +++V L+ S + L +IF G ++S V RD KS + +V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 178 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 237
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 99 NYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG----------------NI 142
Query: 238 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297
+IKNL +ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG
Sbjct: 143 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
Query: 298 KMIVSKPLYVAVAQRKEERRARLQ 321
++ + ++V K++R ++ +
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFE 226
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 233/569 (40%), Positives = 327/569 (57%), Gaps = 85/569 (14%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN++P+ + RIM+S RDP++RK+G GNI+IKNLD +ID+KALHDTFS+FG IL
Sbjct: 102 RALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQIL 161
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVA 126
SCKIATD G S+GFGFV +E+ ESA++AI +NGML+NDK+VFVG + K +R
Sbjct: 162 SCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEE 221
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
K F NVF+KNL T+ + +++ ++G +S + + +GK FGFV+++ D A
Sbjct: 222 QKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAV 281
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KA++ L+ +F + + G+A+KK ER EL+ Q+E + E ++K+QG+NLYIKNL D+I
Sbjct: 282 KAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTI 341
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DD+KL+ F+ GTITS KVM D +G SKG GFV +S+PEEA++A+ EMN +++ KPLY
Sbjct: 342 DDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLY 401
Query: 307 VAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 363
V +AQRK+ RR++LQ Q +QMR
Sbjct: 402 VVLAQRKDVRRSQLQQQIQAKNQMR----------------------------------- 426
Query: 364 IPPQAGFGYQQQLVPGMRPAGAPM--PNFFVPVVSQGQQGQRPGGRRG---AGPVQQTQQ 418
QQQ G P G M P F P GQ G P GR G Q +
Sbjct: 427 --------LQQQAAAGGLP-GQYMGNPGVFYP----GQPGFMPPGRGGMPFGANPQMMMR 473
Query: 419 PLPIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGA----GSML---------PVPVDMG 462
P +Q PPRG P G NM P + G G M P P
Sbjct: 474 PPMPPQNQFPPRG----VPGGPNMYGAPPQGYQQGGFPPQGPMRGGQPPRSGQPGPQGQF 529
Query: 463 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV---EQLERDA--AAKVT 517
G PRR G+ ++S AL NA EQ + L+GE+LYP V + ++ +A A K+T
Sbjct: 530 RGAPRRKD--GESRVADSISNALENAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKIT 587
Query: 518 GMLLEMDQTEVLHLLESPEALKAKVAEAM 546
GMLLEM E+L +++ E L+A++ +A+
Sbjct: 588 GMLLEMPIKEILEVIDDEEGLQAQINDAI 616
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 145/288 (50%), Gaps = 15/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ LD S+ L + F+ G + S ++ D + +S G+ +V F N+ A+++
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
LN I ++ + +R+ KT N+++KNLD + ++ L F +G I S
Sbjct: 107 LNYSPIKERPCRI----MWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILS 162
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ D G S+ FGFV++E+A+ A A++ +NG +D++ +VG KS+R Q + Q
Sbjct: 163 CKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQ 222
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
K N++IKNLG I + + +EL ++FG +S + + G G GFV
Sbjct: 223 ----------KNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFV 272
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+ + A +A+ ++ L+ A++K ER L+ Q+ R
Sbjct: 273 DYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASR 320
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270
+E E + + E+ KE D+ +LY+ L S+ + L E+F+ G +TS +V RD
Sbjct: 24 AEGEAKTESSEEKGSKE--DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDA 81
Query: 271 -SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312
+ S G +V F + RAL E+N I +P + +QR
Sbjct: 82 ITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQR 124
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/482 (43%), Positives = 287/482 (59%), Gaps = 81/482 (16%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
S +AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++F
Sbjct: 117 SDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAF 176
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+A D +G SKG+GFV +E E+A AI +N ML+N+K+V+VG+ + K++R++
Sbjct: 177 GNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQS 236
Query: 125 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 182
+K F N++VKN+ TDE+ + +F +YG +TS+ + RD +GKS+ FGFVNF
Sbjct: 237 KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTH 296
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 242
+ AAKAVE LNGK+F ++ YVG+AQKK ERE+EL+ +E A E +K+QG+NLYIKNL
Sbjct: 297 ECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNL 356
Query: 243 GDSIDDEKLKELFSEFGTITSCKVMRDPS------------------------------- 271
D IDD+KL+++FSE+G ITS KVMRD
Sbjct: 357 ADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAE 416
Query: 272 --------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317
G SKG GFV FS P++A++A+AEMN +MI KPLYVA+AQRK+ R+
Sbjct: 417 GAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRK 476
Query: 318 ARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLV 377
+L+A + M + +GL QQ++ Q P P G Q +
Sbjct: 477 NQLEASIQARNQLRMQQAA---------AQAGLPQQYM--QTPVYYAP-----GQQPNFM 520
Query: 378 PGMRPAGAPMP----NFFVPVVSQGQQGQRP-----GGRRGAGPVQQTQQPLPIMP-HQM 427
P P G MP +P V G+ GQ P GGR G P Q LPI P Q
Sbjct: 521 P---PGGRGMPFPQGGLGMPAVQGGRPGQFPPYAQQGGRGGMPPQQ-----LPIYPLGQF 572
Query: 428 PP 429
PP
Sbjct: 573 PP 574
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 160/293 (54%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + + A+
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 124 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 179
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + AA+A++ +N ++++ YVG K +R+ +
Sbjct: 180 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFE 239
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ DE+ ++LF+++G +TS + RD G S+
Sbjct: 240 EMKANF-------------TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSR 286
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 287 GFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAAR 339
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 482 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 541
S A +P+QQ+ +LGE+L+P ++ L+ D A K+TGMLLEMD E+++LLE AL AK
Sbjct: 681 SQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAK 740
Query: 542 VAEAMEVLRSVAQQQ 556
V EAM V + Q
Sbjct: 741 VNEAMAVYDEYVKSQ 755
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 363 bits (931), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 174/321 (54%), Positives = 239/321 (74%), Gaps = 2/321 (0%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+ +A+ LN+ +N + RIM+S RDP+IRK G+GNIFIKNL +ID+KALH+TFS+FG
Sbjct: 103 AGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFG 162
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--E 123
+LSCK+A D +G S+GFGFV F+ + A++AI+ +NGML+N +V+V + K++R +
Sbjct: 163 EVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISK 222
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
K F N++VKN+D TTDE+ +++F +YG I SA + +D +GK K FGFVNF + +
Sbjct: 223 LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHN 282
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
AAKAVE LNGK+F + YVG+AQKK ER +ELK Q+EQ E + KFQG+NL+IKNL
Sbjct: 283 AAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLD 342
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDDEKLKE F+ +GTITS +VMRD G SKG GFV FS+PEEA++A+ E N +++ K
Sbjct: 343 DSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGK 402
Query: 304 PLYVAVAQRKEERRARLQAQF 324
PLYVA+AQRK+ RR++L Q
Sbjct: 403 PLYVAIAQRKDVRRSQLAQQI 423
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 128 KTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADD 184
K + NN ++V LD + T+ L +F G I+S V RD K+ + +VN+ + +
Sbjct: 44 KVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEA 103
Query: 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 244
KA++ LN + + R + SER+ ++ K N++IKNL
Sbjct: 104 GKKAIQELNYAEINGRPCRI----MWSERDPAIR------------KKGSGNIFIKNLHP 147
Query: 245 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304
+ID++ L E FS FG + SCKV D +G S+G GFV F +A A+ +NG ++
Sbjct: 148 AIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLE 207
Query: 305 LYVAVAQRKEERRARLQ 321
+YVA+ K++R ++L+
Sbjct: 208 VYVAMHVPKKDRISKLE 224
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 494 RTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 551
R LGE LY V + +AA K+TGM+L++ +V+ LL++ E + + EA+ +
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEALAAYEN 583
Query: 552 VAQQQ 556
++Q
Sbjct: 584 FKKEQ 588
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 363 bits (931), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 194/400 (48%), Positives = 268/400 (67%), Gaps = 41/400 (10%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+A++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+IL
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 128
S KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213
Query: 129 TK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
TK + N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA
Sbjct: 214 TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAV 273
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
KAVEALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV 333
Query: 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306
DDEKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLY
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 307 VAVAQRKEERRARLQAQF---SQMR---------------------PVAMGPSVPPR-MP 341
VA+AQRK+ RR++L Q +QMR P+ G +PPR +P
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYG-VMPPRGVP 452
Query: 342 MYPPGP-----------SGLGQQFLYGQAPPAIIPPQAGF 370
P P +G+ QF G P +PPQ GF
Sbjct: 453 FNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVPPQGGF 490
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 123 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 181
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 182 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 241
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 242 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 302 SKPLYVAVAQRKEERRARLQ 321
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 491 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 549 LRSVAQQQ 556
S ++Q
Sbjct: 563 YESFKKEQ 570
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 197/405 (48%), Positives = 264/405 (65%), Gaps = 42/405 (10%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65
+A A++ LNFTP+ K RIM+S RDPS+RK G GNIFIKNL ID+KAL+DTFS FG
Sbjct: 88 AAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG 147
Query: 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 125
NILS K+ATD +G+SKGFG+V FE ESA AID LNGML+N ++++VG L K+ERE+
Sbjct: 148 NILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESK 207
Query: 126 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 183
+K F NV++KN++ TTD++ +++ ++G S V+ R +G++K FGFVNF N +
Sbjct: 208 FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHE 267
Query: 184 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 243
DA K VE LN +F + YV +AQKK ER+QELK Q+E E + K+QG+NL+IKNL
Sbjct: 268 DAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLD 327
Query: 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303
DSIDD+KL+E F+ +GTITS KVM +G SKG GFV FSTPEEA++A+ E N +++ K
Sbjct: 328 DSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Query: 304 PLYVAVAQRKEERRARLQAQF---SQMR----------------------PVAMGPSVPP 338
PLYVA+AQRK+ RR++L Q +QMR P+ G +PP
Sbjct: 388 PLYVAIAQRKDVRRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYG-VMPP 446
Query: 339 R-MPMYPPGP--SGLG---------QQFLYGQAPPAIIPPQAGFG 371
R +P P P + +G QF G P +PPQ GF
Sbjct: 447 RGVPFNGPNPQMANMGAMPKNGMPPHQFRNG--PVYGVPPQGGFA 489
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ +LD S+ L+D FS G + S ++ D + S G+ +V F + ++A+ AI
Sbjct: 34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAI 93
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+KLN I K + +R+ K N+F+KNL ++ L F +G I
Sbjct: 94 EKLNFTPIKGKLCRI----MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNI 149
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S+ V D GKSK FG+V+FE + A++A++ALNG + +E YVG K ERE +
Sbjct: 150 LSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFE 209
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+YIKN+ D++ +EL ++FG S + R P G +K
Sbjct: 210 EMKANF-------------TNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENK 256
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV F E+A + + E+N +PLYV AQ+K ER+ L+ Q+ R
Sbjct: 257 GFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATR 309
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 218 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKG 276
+G E+ ETV +LY+ +L S+ + L ++FS G ++S +V RD + S G
Sbjct: 22 EGTNEENQSETV----SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLG 77
Query: 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
+V F+ + A A+ ++N I K + +QR R +
Sbjct: 78 YAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKK 120
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 491 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
++QR LGE LY + D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEASAA 560
Query: 549 LRS 551
S
Sbjct: 561 YES 563
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 338 bits (868), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 209/549 (38%), Positives = 305/549 (55%), Gaps = 53/549 (9%)
Query: 10 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 69
A++ N + LN K IR+M+S R P R++G GN+F+KNL +S+ + L D F FGNI+S
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140
Query: 70 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 129
CK+AT G+S+G+GFVQFE +++A AI LN ++ DK+++VG F++K +R V +
Sbjct: 141 CKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR--VKPEE 198
Query: 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 189
K+ N+++KNLD +++ L++ F E+G I S + +D + + + FVNF+N +DA +A
Sbjct: 199 KYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258
Query: 190 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 249
E +NG KF + YVG+AQKK+EREQ L+ QF++ +E + N+Y+KN+ ++ +E
Sbjct: 259 ETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309
+L++ FS+ GTITS K+M D G SKG GFV FSTPEEA A+ +G+M KPLYVA+
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 310 AQRKEERRARLQAQFS---QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 366
AQ+KE+R+ +LQ QF + R + SV P Y P Y P ++
Sbjct: 379 AQKKEDRKMQLQVQFGNRVEARKSSSSASVNP--GTYAP--------LYYTNTHPGMV-- 426
Query: 367 QAGFGYQQQ--LVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 424
YQ + G+ PN P M
Sbjct: 427 -----YQSYPLMWKSANMIGSSYPN-------------------------SEAVTYPPMV 456
Query: 425 HQMPPRGHAYRY-PLGRNMQDF-PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 482
P + R L RN + P + MLP+ D R G+ M +
Sbjct: 457 ANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQ 516
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
E Q LLGE L+PLVE+LE A K+TGMLLEMD++E+L LL+SPE L +V
Sbjct: 517 RQSETVGMEMQ--LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRV 574
Query: 543 AEAMEVLRS 551
EA EVL+S
Sbjct: 575 DEAFEVLKS 583
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 161/288 (55%), Gaps = 19/288 (6%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAI 98
T ++++ +L S+ L+D F+ F ++ S ++ D S G+S +G+ F +++ A AI
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
+K N L+N K + V +R + A + NVFVKNL ES T+ L+ +F ++G I
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPD----ARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNI 138
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218
S V DGKS+ +GFV FE D A A++ LN D+E YVGK KK++R +K
Sbjct: 139 VSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR---VK 195
Query: 219 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278
+ +K+ NLY+KNL + ++ L+E F+EFG I S + +D + + +G
Sbjct: 196 PE---------EKYT--NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYA 244
Query: 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 326
FV F PE+A RA +NG SK LYV AQ+K ER L+ QF +
Sbjct: 245 FVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKE 292
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 149/263 (56%), Positives = 199/263 (75%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 169
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 229
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KNLD D++ +K+F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 230 MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQ 289
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D I
Sbjct: 290 AAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDI 349
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+ELF +GTITS KVMRD
Sbjct: 350 DDEKLRELFGPYGTITSAKVMRD 372
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 163/300 (54%), Gaps = 21/300 (7%)
Query: 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 91
P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G+ +V + N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 92 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 151
+ A++ LN LI K + +R+ KT NVF+KNLD + ++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211
F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 212 ERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 268
+R+ +E+K F N+YIKNL IDD++ +++F +FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
D G S+G GFV FST E A A+ EMN K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 144/321 (44%), Gaps = 75/321 (23%)
Query: 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 324
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 425 KSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 325 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPG 379
+ + P+ M P G GQQ F+ G PPQ G +PG
Sbjct: 485 QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPG 541
Query: 380 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGH 432
RP P P P GQQG RG GP QQ Q +P M Q P P G
Sbjct: 542 GRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFAQGIP-MGMQGPGGIPNGM 588
Query: 433 AYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGI-------------------------- 465
Y M F GAG VP + MG G+
Sbjct: 589 GY-----PQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGR 643
Query: 466 ---------PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 516
P+ A+ G + L A P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 644 GQNAAAPAGPQEGAAGG------VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKI 697
Query: 517 TGMLLEMDQTEVLHLLESPEA 537
TGMLLEMD TE+L L P A
Sbjct: 698 TGMLLEMDNTELLSLTRKPCA 718
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 34/181 (18%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101
N+++KNL ID + L + F +G I S K+ D E +S +A +
Sbjct: 339 NLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD----------TNVERDQSPDSAGKEK 388
Query: 102 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 161
NDK+ ++ E + ++ + K D KK FG
Sbjct: 389 EADKENDKEATPEAEKAEKAEEKPSESSEEKDKEAKKSD--------KKPFG-------- 432
Query: 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 221
KSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+
Sbjct: 433 --------KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 222 E 222
+
Sbjct: 485 Q 485
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 201/263 (76%), Gaps = 2/263 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
RAL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 105 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL 164
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++
Sbjct: 165 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 224
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F NV++KN+D+ T+E+ +++F ++G ITSA + RD +GKS+ FGFVNF + A
Sbjct: 225 MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQ 284
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY+KNL D +
Sbjct: 285 AAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDV 344
Query: 247 DDEKLKELFSEFGTITSCKVMRD 269
DDEKL+ELF +GTITS KVMRD
Sbjct: 345 DDEKLRELFGPYGTITSAKVMRD 367
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 208/636 (32%), Positives = 292/636 (45%), Gaps = 130/636 (20%)
Query: 6 SAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A A+ +N LN+K + + + S +D + K+ N++IKN+D+ + + +
Sbjct: 189 AANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRE 248
Query: 60 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119
F FG I S ++ D G+S+GFGFV F ESAQ A+D++N I ++++VG +K
Sbjct: 249 LFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKK 308
Query: 120 QERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167
ERE A K + N++VKNL + DE L+++FG YGTITSA VMRD
Sbjct: 309 HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD- 367
Query: 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 227
N E D+E +A K++E+E + E+ ++
Sbjct: 368 ---------TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEK 407
Query: 228 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287
D G D + L G SKG GFV FS+P+E
Sbjct: 408 PADS--GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDE 445
Query: 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMY 343
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + + P+ M
Sbjct: 446 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQ 505
Query: 344 PPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 402
P G GQQ F+ GQ PPQ G +PG RP P P P GQQG
Sbjct: 506 PAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQYPGP---FP----GQQGG 556
Query: 403 RPGGRRGAGPVQQTQ---QPLPIMPHQMP-PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 458
R G GP QQ Q +P+ Q P P G Y P G M F GAG VP
Sbjct: 557 R-----GMGPNQQLPPNFQGIPMGAMQGPVPNGMGY--PQG--MAQVQFGRGAGGRGQVP 607
Query: 459 --VDMGAG------------IPRRD----------------ASVGQPMPITA---LSTAL 485
+MG G +P + A G+P A + AL
Sbjct: 608 GMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQAL 667
Query: 486 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 545
+ A P QQ+ +LGE+LYP ++ + + A K+TGMLLEM+ TE+L LLE EAL+AKV EA
Sbjct: 668 SAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEA 727
Query: 546 MEVL---------RSVAQQQANNPADQLASLSLNEN 572
+ V S A +A P + S EN
Sbjct: 728 LNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 21/309 (6%)
Query: 24 IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKG 82
+ + S P+ + + ++++ LD S+ L++ FSS G + S ++ D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 83 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES 142
+ +V + N + A++ LN LI K + +R+ KT NVF+KNLD +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 143 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 202
++ L F +G I S V +D G SK +GFV++E A+ A A++ +NG +D++
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 203 YVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 259
+VG K +R+ +E+K F N+YIKN+ + +E+ +ELF +FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 260 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 319
ITS + RD G S+G GFV FST E A A+ EMN K I ++ LYV AQ+K ER
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 320 LQAQFSQMR 328
L+ Q+ R
Sbjct: 315 LRKQYEAAR 323
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 314 bits (805), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 144/264 (54%), Positives = 204/264 (77%), Gaps = 3/264 (1%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH + K++R++
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDE 236
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDA 185
+K F N++VKN++ TD++ + +F +YG +TS+ + RD + GKS+ FGFVNF + +DA
Sbjct: 237 MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDA 296
Query: 186 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 245
+KAV+ LN K+F + YVG+AQKK ERE+EL+ +E A +E K+QG+NLYIKNL D
Sbjct: 297 SKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDE 356
Query: 246 IDDEKLKELFSEFGTITSCKVMRD 269
+DDEKL++LFSEFG ITS KVMRD
Sbjct: 357 VDDEKLRQLFSEFGPITSAKVMRD 380
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D +G SK +GFV++E + A++A++ +NG ++++ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGIS 274
E+K F N+Y+KN+ + D++ + LF ++G +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+G GFV F++ E+AS+A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 70/287 (24%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYS--HRDPSIR----KSGTGNIFIKNLDKSIDHKALHD 59
+A++A+ +N LN K + + + +D + K+ NI++KN++ +
Sbjct: 201 AASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRT 260
Query: 60 TFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118
F +G++ S +A D +G+S+GFGFV F + E A A+ +LN + + ++VG +
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQK 320
Query: 119 KQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 166
K ERE A K + N+++KNLD+ DE L+++F E+G ITSA VMRD
Sbjct: 321 KHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Query: 167 -----------------------------GDGKS------------------KCFGFVNF 179
GD K FGFV F
Sbjct: 381 SITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCF 440
Query: 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 226
N DDA KAV +N + +++ YV AQ+K R K Q EQ+++
Sbjct: 441 ANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 20/208 (9%)
Query: 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 191
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 192 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 251
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDVAIDNKAL 165
Query: 252 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311
+ F+ FG I SCKV +D +G SKG GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 312 RKEERRAR---LQAQFSQMRPVAMGPSV 336
K++R+++ ++A F+ + + P V
Sbjct: 226 PKKDRQSKFDEMKANFTNIYVKNINPEV 253
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 548
+P QQ+ +LGE+++P ++ + + A K+TGMLLEMD TE++ L+E+ AL++KV EA+ V
Sbjct: 676 NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAV 735
Query: 549 LRSVAQQQANNPADQLAS 566
+QQ + Q S
Sbjct: 736 YDDYVRQQGDGEGAQAPS 753
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 145/261 (55%), Positives = 198/261 (75%), Gaps = 2/261 (0%)
Query: 9 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68
+AL+ LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNIL
Sbjct: 104 KALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL 163
Query: 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--A 126
SCK+A D G SKG+GFV +E E+A NAI +NGML+N+K+VFVGH + K+ER +
Sbjct: 164 SCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 223
Query: 127 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 186
+K F N++VKN+D TDED +++F ++G ITSA + RD GKS+ FGFVN+ + AA
Sbjct: 224 MKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAA 283
Query: 187 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 246
AV+ LN +F ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLYIKNL D +
Sbjct: 284 VAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDV 343
Query: 247 DDEKLKELFSEFGTITSCKVM 267
DDEKL+++F+ FGTITS KV+
Sbjct: 344 DDEKLRDMFTPFGTITSAKVI 364
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)
Query: 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 98
+ ++++ LD S+ L + FSS G + S ++ D + +S G+ +V + + E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 99 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158
++LN +I K + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---Q 215
S V +D G SK +GFV++E A+ A A++ +NG ++++ +VG K ER +
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 216 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 275
E+K F N+Y+KN+ + DE +ELF + G ITS + RD G S+
Sbjct: 223 EMKANF-------------TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSR 269
Query: 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
G GFV + E A+ A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 129/290 (44%), Gaps = 75/290 (25%)
Query: 6 SAARALDVLNFTPLNNKSIRIMYSHRDPSIR--------KSGTGNIFIKNLDKSIDHKAL 57
+A A+ +N LN K ++ H P K+ NI++KN+D + +
Sbjct: 188 AANNAIKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDF 245
Query: 58 HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117
+ F G+I S IA D G+S+GFGFV + E+A A+D LN + ++++VG
Sbjct: 246 RELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQ 305
Query: 118 RKQERET----------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVM- 164
+K ERE + ++K+ N+++KNL++ DE L+ +F +GTITSA V+
Sbjct: 306 KKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVIL 365
Query: 165 -----------------------------------------RDGD-----------GKSK 172
+ GD GKSK
Sbjct: 366 RDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSK 425
Query: 173 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 222
FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 426 GFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 475
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%)
Query: 483 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 542
+ L+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 543 AEAMEV 548
EAM V
Sbjct: 713 DEAMSV 718
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 308 bits (789), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 156/312 (50%), Positives = 221/312 (70%), Gaps = 6/312 (1%)
Query: 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 63
L+ A +ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+
Sbjct: 61 LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA 120
Query: 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 123
FG ILS K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE
Sbjct: 121 FGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 179
Query: 124 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
+++K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F+
Sbjct: 180 A-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIK
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIK 298
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++
Sbjct: 299 NLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRIL 357
Query: 301 VSKPLYVAVAQR 312
SKPL +A+AQR
Sbjct: 358 GSKPLSIALAQR 369
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 100
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 101 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 220
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 221 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280
+ N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 186 ASEFT----------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 328
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 124 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 182
VA K + +++V +L T++ L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 183 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 238
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 298
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 299 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 332
++ ++V + +++R A L+++ S+ V +
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 270 bits (689), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 64
+ A AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID++AL FS+F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 65 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 124
GNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG F +ER
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-A 187
Query: 125 VAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 180
++T+ F NVFVKN+ + DE LK++F EYG S V+RD GKSK FGFV +E
Sbjct: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 181 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 240
+ A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + + G+ +YIK
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 307
Query: 241 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 300
NL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++A+ EMNG+++
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVV 366
Query: 301 VSKPLYVAVAQ 311
SKPL+V + Q
Sbjct: 367 GSKPLHVTLGQ 377
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNG 103
+ +LD + L+ F G + +I D +S G+G+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163
LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S V
Sbjct: 82 DLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 164 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 223
+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR----- 191
Query: 224 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV +
Sbjct: 192 ----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 284 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 343
T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++ S PP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRPPGVPIY 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,289,109
Number of Sequences: 539616
Number of extensions: 10323143
Number of successful extensions: 41607
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 825
Number of HSP's that attempted gapping in prelim test: 35023
Number of HSP's gapped (non-prelim): 4593
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)