Query 008162
Match_columns 575
No_of_seqs 406 out of 2889
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 20:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-88 2.5E-93 751.4 54.1 508 1-550 49-562 (562)
2 KOG0123 Polyadenylate-binding 100.0 1.1E-53 2.3E-58 438.9 27.6 318 1-327 44-363 (369)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.5E-44 5.4E-49 375.9 29.9 269 40-314 3-350 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 5.9E-43 1.3E-47 387.0 41.1 259 42-317 2-265 (562)
5 KOG0117 Heterogeneous nuclear 100.0 4.8E-41 1E-45 332.7 34.7 249 38-318 81-336 (506)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.3E-40 5E-45 357.7 32.0 304 1-312 45-479 (481)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 2.3E-40 4.9E-45 354.8 28.8 279 4-314 19-308 (578)
8 KOG0148 Apoptosis-promoting RN 100.0 2.3E-38 5E-43 295.1 19.7 233 40-314 6-239 (321)
9 KOG0145 RNA-binding protein EL 100.0 5E-38 1.1E-42 290.7 21.7 268 40-313 41-358 (360)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.8E-37 3.9E-42 335.2 27.7 262 40-313 2-351 (481)
11 TIGR01622 SF-CC1 splicing fact 100.0 1.2E-35 2.6E-40 321.1 30.4 272 39-314 88-449 (457)
12 KOG0144 RNA-binding protein CU 100.0 6.7E-36 1.5E-40 294.7 19.8 292 17-313 11-504 (510)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1E-34 2.3E-39 318.1 27.2 268 39-313 174-502 (509)
14 KOG0127 Nucleolar protein fibr 100.0 6.9E-35 1.5E-39 294.8 23.4 274 41-314 6-379 (678)
15 KOG0123 Polyadenylate-binding 100.0 1.9E-34 4E-39 296.7 24.0 257 41-325 2-258 (369)
16 TIGR01645 half-pint poly-U bin 100.0 8.3E-34 1.8E-38 304.5 29.9 170 39-208 106-282 (612)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-31 6.2E-36 277.4 24.6 209 1-211 52-350 (352)
18 TIGR01659 sex-lethal sex-letha 100.0 1.7E-29 3.8E-34 258.7 22.0 168 128-313 104-275 (346)
19 TIGR01659 sex-lethal sex-letha 100.0 3.3E-29 7.2E-34 256.6 21.8 168 36-209 103-274 (346)
20 KOG0127 Nucleolar protein fibr 100.0 4.4E-29 9.6E-34 252.8 22.1 295 1-295 54-516 (678)
21 TIGR01648 hnRNP-R-Q heterogene 100.0 2.7E-29 5.8E-34 269.7 20.0 246 1-262 106-369 (578)
22 smart00517 PolyA C-terminal do 100.0 1.6E-29 3.5E-34 187.9 5.7 64 489-552 1-64 (64)
23 KOG0144 RNA-binding protein CU 100.0 1.3E-28 2.9E-33 243.3 13.3 171 130-317 33-210 (510)
24 TIGR01645 half-pint poly-U bin 100.0 6.5E-28 1.4E-32 259.2 19.1 177 129-312 105-283 (612)
25 KOG0148 Apoptosis-promoting RN 100.0 1.4E-27 3E-32 223.1 16.5 181 23-209 42-237 (321)
26 KOG0117 Heterogeneous nuclear 99.9 1.8E-26 3.8E-31 229.5 18.2 197 1-213 132-334 (506)
27 KOG0110 RNA-binding protein (R 99.9 1.2E-26 2.5E-31 243.1 16.8 264 38-315 383-695 (725)
28 KOG0124 Polypyrimidine tract-b 99.9 3.9E-26 8.5E-31 220.8 19.1 272 40-311 113-533 (544)
29 KOG0145 RNA-binding protein EL 99.9 5.4E-26 1.2E-30 210.9 17.7 207 2-210 91-358 (360)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-25 2.6E-30 246.6 22.7 208 1-209 230-501 (509)
31 PF00658 PABP: Poly-adenylate 99.9 5.1E-27 1.1E-31 181.7 5.8 71 479-549 2-72 (72)
32 TIGR01622 SF-CC1 splicing fact 99.9 2.9E-25 6.3E-30 240.2 20.4 177 129-312 87-265 (457)
33 KOG0147 Transcriptional coacti 99.9 2.5E-25 5.5E-30 227.4 13.0 270 38-312 177-527 (549)
34 KOG4212 RNA-binding protein hn 99.9 5.3E-23 1.2E-27 203.5 21.7 160 41-200 45-284 (608)
35 KOG0131 Splicing factor 3b, su 99.9 9.5E-24 2.1E-28 187.0 10.0 170 130-316 8-180 (203)
36 KOG0131 Splicing factor 3b, su 99.9 6.5E-23 1.4E-27 181.7 12.0 173 35-212 4-179 (203)
37 KOG0146 RNA-binding protein ET 99.9 4.5E-23 9.7E-28 192.3 9.7 186 130-315 18-367 (371)
38 KOG0109 RNA-binding protein LA 99.9 6.3E-23 1.4E-27 193.9 10.5 147 42-210 4-150 (346)
39 KOG0109 RNA-binding protein LA 99.9 5.4E-22 1.2E-26 187.6 9.3 147 133-313 4-150 (346)
40 KOG0110 RNA-binding protein (R 99.9 2.1E-21 4.5E-26 203.9 14.5 215 1-215 428-698 (725)
41 KOG4211 Splicing factor hnRNP- 99.9 5E-20 1.1E-24 186.4 21.8 261 40-306 10-351 (510)
42 KOG0124 Polypyrimidine tract-b 99.8 9.4E-21 2E-25 183.7 13.0 172 131-309 113-286 (544)
43 KOG0146 RNA-binding protein ET 99.8 1.3E-19 2.8E-24 169.3 11.7 180 32-211 11-366 (371)
44 KOG4205 RNA-binding protein mu 99.8 8.9E-20 1.9E-24 181.5 9.7 173 39-213 5-179 (311)
45 KOG4205 RNA-binding protein mu 99.8 1.9E-19 4.1E-24 179.2 8.5 173 130-316 5-179 (311)
46 KOG1365 RNA-binding protein Fu 99.8 2.1E-17 4.6E-22 161.7 19.3 300 14-317 30-366 (508)
47 KOG0147 Transcriptional coacti 99.8 4.5E-19 9.8E-24 181.8 7.3 180 129-313 177-358 (549)
48 KOG1190 Polypyrimidine tract-b 99.8 6.4E-18 1.4E-22 166.8 14.6 263 39-313 27-373 (492)
49 KOG1190 Polypyrimidine tract-b 99.7 1.1E-16 2.3E-21 158.2 18.7 260 42-312 152-490 (492)
50 KOG0120 Splicing factor U2AF, 99.7 1E-17 2.2E-22 174.5 11.6 268 40-313 175-492 (500)
51 KOG0105 Alternative splicing f 99.7 4.1E-16 8.9E-21 138.6 13.0 152 38-197 4-175 (241)
52 KOG4212 RNA-binding protein hn 99.7 9.5E-16 2E-20 152.5 16.5 181 129-310 42-291 (608)
53 KOG4206 Spliceosomal protein s 99.7 2E-15 4.3E-20 139.8 14.5 175 131-311 9-220 (221)
54 KOG1456 Heterogeneous nuclear 99.6 7E-15 1.5E-19 143.8 18.3 261 38-311 29-361 (494)
55 KOG4211 Splicing factor hnRNP- 99.6 4.3E-15 9.3E-20 150.9 14.8 176 132-318 11-187 (510)
56 PLN03134 glycine-rich RNA-bind 99.6 1.8E-15 3.8E-20 136.3 10.6 81 232-312 32-113 (144)
57 KOG4206 Spliceosomal protein s 99.6 3.5E-14 7.6E-19 131.6 15.6 162 40-207 9-219 (221)
58 PLN03134 glycine-rich RNA-bind 99.6 7.8E-15 1.7E-19 132.1 11.0 82 38-119 32-114 (144)
59 KOG0105 Alternative splicing f 99.6 1.7E-14 3.8E-19 128.3 12.9 171 130-309 5-186 (241)
60 KOG1456 Heterogeneous nuclear 99.6 2.9E-13 6.2E-18 132.6 21.9 293 1-302 74-474 (494)
61 KOG1548 Transcription elongati 99.6 6.5E-14 1.4E-18 136.3 16.6 180 129-311 132-350 (382)
62 KOG0106 Alternative splicing f 99.5 3.6E-15 7.9E-20 139.7 5.4 168 132-313 2-171 (216)
63 KOG1548 Transcription elongati 99.5 1.8E-13 3.9E-18 133.3 16.7 167 40-209 134-351 (382)
64 PF00076 RRM_1: RNA recognitio 99.5 4.2E-14 9.1E-19 111.0 8.9 70 237-306 1-70 (70)
65 KOG0106 Alternative splicing f 99.5 1.6E-14 3.4E-19 135.4 7.1 153 42-208 3-169 (216)
66 PF00076 RRM_1: RNA recognitio 99.5 5.6E-14 1.2E-18 110.3 9.1 70 43-112 1-70 (70)
67 KOG0132 RNA polymerase II C-te 99.5 1.3E-12 2.9E-17 138.9 21.8 80 231-315 418-497 (894)
68 KOG0125 Ataxin 2-binding prote 99.5 1.1E-13 2.4E-18 133.8 8.9 103 14-119 72-174 (376)
69 KOG0125 Ataxin 2-binding prote 99.5 1.2E-13 2.6E-18 133.5 8.2 80 233-313 95-174 (376)
70 COG0724 RNA-binding proteins ( 99.5 4.6E-13 1E-17 134.0 12.5 164 131-294 115-286 (306)
71 KOG1457 RNA binding protein (c 99.4 9E-13 2E-17 120.9 12.6 157 39-198 33-274 (284)
72 KOG0149 Predicted RNA-binding 99.4 1.5E-13 3.3E-18 127.6 7.6 80 232-312 10-90 (247)
73 PF14259 RRM_6: RNA recognitio 99.4 4.3E-13 9.2E-18 105.6 9.2 70 237-306 1-70 (70)
74 KOG1457 RNA binding protein (c 99.4 1.7E-12 3.6E-17 119.2 12.3 168 131-301 34-274 (284)
75 PF14259 RRM_6: RNA recognitio 99.4 8.8E-13 1.9E-17 103.8 8.9 70 43-112 1-70 (70)
76 KOG0120 Splicing factor U2AF, 99.4 1.5E-12 3.1E-17 136.3 12.4 207 1-208 230-490 (500)
77 KOG0122 Translation initiation 99.4 8.7E-13 1.9E-17 122.9 9.3 84 36-119 185-269 (270)
78 COG0724 RNA-binding proteins ( 99.4 3E-12 6.5E-17 128.1 13.2 150 40-189 115-284 (306)
79 KOG0122 Translation initiation 99.4 1E-12 2.2E-17 122.5 8.3 81 233-313 188-269 (270)
80 KOG0149 Predicted RNA-binding 99.4 7.6E-13 1.7E-17 123.0 6.8 80 128-208 9-89 (247)
81 PLN03120 nucleic acid binding 99.4 2.4E-12 5.3E-17 123.9 10.0 75 234-311 4-78 (260)
82 KOG4207 Predicted splicing fac 99.4 1.1E-12 2.5E-17 118.9 6.5 78 234-311 13-91 (256)
83 KOG1365 RNA-binding protein Fu 99.3 7.7E-12 1.7E-16 123.1 10.2 202 2-205 110-357 (508)
84 KOG0107 Alternative splicing f 99.3 3.9E-12 8.6E-17 112.8 7.2 77 232-312 8-84 (195)
85 PLN03213 repressor of silencin 99.3 1.1E-11 2.3E-16 125.6 11.2 79 232-313 8-88 (759)
86 smart00362 RRM_2 RNA recogniti 99.3 1.4E-11 3.1E-16 96.2 9.7 72 236-308 1-72 (72)
87 PLN03120 nucleic acid binding 99.3 1.1E-11 2.3E-16 119.6 10.4 77 39-118 3-79 (260)
88 KOG0114 Predicted RNA-binding 99.3 1.9E-11 4.2E-16 98.8 9.9 85 35-121 13-97 (124)
89 KOG0128 RNA-binding protein SA 99.3 1.8E-13 3.9E-18 147.2 -2.7 274 3-312 529-814 (881)
90 KOG0126 Predicted RNA-binding 99.3 5.4E-13 1.2E-17 118.7 0.0 77 234-310 35-112 (219)
91 smart00362 RRM_2 RNA recogniti 99.3 2.8E-11 6E-16 94.6 9.6 71 42-113 1-71 (72)
92 PLN03121 nucleic acid binding 99.3 1.9E-11 4.2E-16 115.8 10.0 75 233-310 4-78 (243)
93 PLN03213 repressor of silencin 99.3 1.5E-11 3.3E-16 124.5 9.7 128 40-177 10-146 (759)
94 KOG4307 RNA binding protein RB 99.3 3.4E-11 7.3E-16 126.5 12.6 170 38-209 309-513 (944)
95 KOG0126 Predicted RNA-binding 99.2 1.8E-12 3.9E-17 115.4 0.9 79 130-208 34-113 (219)
96 KOG0113 U1 small nuclear ribon 99.2 3.3E-11 7.2E-16 115.4 8.8 84 229-312 96-180 (335)
97 KOG4849 mRNA cleavage factor I 99.2 9.5E-10 2.1E-14 107.2 18.9 80 234-313 80-162 (498)
98 KOG0107 Alternative splicing f 99.2 3.4E-11 7.4E-16 106.9 8.1 79 38-120 8-86 (195)
99 KOG0132 RNA polymerase II C-te 99.2 4.2E-10 9.2E-15 120.2 17.8 109 130-256 420-528 (894)
100 smart00360 RRM RNA recognition 99.2 6.4E-11 1.4E-15 92.1 8.7 70 239-308 1-71 (71)
101 cd00590 RRM RRM (RNA recogniti 99.2 1.3E-10 2.8E-15 91.3 10.2 74 236-309 1-74 (74)
102 PLN03121 nucleic acid binding 99.2 7.2E-11 1.6E-15 111.9 10.0 76 40-118 5-80 (243)
103 KOG0114 Predicted RNA-binding 99.2 9.5E-11 2.1E-15 94.9 9.1 79 234-314 18-96 (124)
104 KOG0113 U1 small nuclear ribon 99.2 8.2E-11 1.8E-15 112.8 10.1 88 30-117 91-179 (335)
105 cd00590 RRM RRM (RNA recogniti 99.2 1.7E-10 3.6E-15 90.6 10.2 73 42-114 1-73 (74)
106 smart00360 RRM RNA recognition 99.2 9.6E-11 2.1E-15 91.1 8.8 69 45-113 1-70 (71)
107 KOG0121 Nuclear cap-binding pr 99.2 5.4E-11 1.2E-15 100.1 7.2 85 128-212 33-118 (153)
108 KOG0121 Nuclear cap-binding pr 99.2 5.6E-11 1.2E-15 100.0 7.2 79 39-117 35-114 (153)
109 KOG4207 Predicted splicing fac 99.2 3.8E-11 8.1E-16 109.2 6.1 79 130-208 12-91 (256)
110 KOG0111 Cyclophilin-type pepti 99.2 1.7E-11 3.7E-16 112.2 3.4 82 233-314 9-91 (298)
111 KOG0108 mRNA cleavage and poly 99.1 1.8E-10 3.9E-15 120.2 10.1 85 41-125 19-104 (435)
112 KOG0108 mRNA cleavage and poly 99.1 1.1E-10 2.3E-15 121.9 8.4 82 235-316 19-101 (435)
113 PF13893 RRM_5: RNA recognitio 99.1 2.4E-10 5.2E-15 85.6 7.7 56 251-310 1-56 (56)
114 KOG0130 RNA-binding protein RB 99.1 1E-10 2.3E-15 99.1 6.0 83 231-313 69-152 (170)
115 smart00361 RRM_1 RNA recogniti 99.1 3.7E-10 8E-15 88.7 8.1 61 248-308 2-70 (70)
116 KOG0130 RNA-binding protein RB 99.1 1.9E-10 4.2E-15 97.5 6.4 79 39-117 71-150 (170)
117 KOG0226 RNA-binding proteins [ 99.1 1.4E-10 3.1E-15 108.8 5.9 169 134-314 99-271 (290)
118 KOG4660 Protein Mei2, essentia 99.1 4.3E-10 9.4E-15 116.7 9.8 150 31-190 66-231 (549)
119 KOG0226 RNA-binding proteins [ 99.0 2.6E-10 5.6E-15 107.1 5.9 168 43-210 99-270 (290)
120 KOG4307 RNA binding protein RB 99.0 1.1E-09 2.5E-14 115.2 10.4 178 134-313 314-514 (944)
121 KOG4454 RNA binding protein (R 99.0 9.4E-11 2E-15 107.5 1.6 138 131-300 9-150 (267)
122 KOG0111 Cyclophilin-type pepti 99.0 4.1E-10 8.9E-15 103.2 5.0 81 40-120 10-91 (298)
123 PF13893 RRM_5: RNA recognitio 99.0 2E-09 4.3E-14 80.6 7.9 56 57-116 1-56 (56)
124 smart00361 RRM_1 RNA recogniti 99.0 2.1E-09 4.5E-14 84.5 8.2 60 145-204 2-69 (70)
125 KOG0129 Predicted RNA-binding 98.9 1.2E-08 2.6E-13 105.3 13.9 153 38-191 257-432 (520)
126 KOG4454 RNA binding protein (R 98.9 3.7E-10 8E-15 103.7 1.3 135 40-194 9-147 (267)
127 KOG0153 Predicted RNA-binding 98.8 8.9E-09 1.9E-13 101.0 7.6 81 227-312 221-302 (377)
128 KOG0129 Predicted RNA-binding 98.8 2.9E-08 6.4E-13 102.4 11.7 162 130-294 258-432 (520)
129 KOG4210 Nuclear localization s 98.8 5.2E-09 1.1E-13 104.5 5.6 172 38-210 86-264 (285)
130 KOG4208 Nucleolar RNA-binding 98.8 1.6E-08 3.4E-13 92.7 7.7 81 39-119 48-130 (214)
131 KOG0128 RNA-binding protein SA 98.8 5.5E-10 1.2E-14 120.8 -2.2 179 2-204 622-809 (881)
132 KOG0415 Predicted peptidyl pro 98.8 9.9E-09 2.1E-13 100.5 6.3 81 38-118 237-318 (479)
133 KOG0415 Predicted peptidyl pro 98.7 1.6E-08 3.4E-13 99.1 6.8 86 230-315 235-321 (479)
134 KOG4208 Nucleolar RNA-binding 98.7 3.3E-08 7.1E-13 90.7 7.0 79 235-313 50-130 (214)
135 KOG4210 Nuclear localization s 98.7 1.6E-08 3.4E-13 101.2 4.2 175 130-313 87-264 (285)
136 KOG4661 Hsp27-ERE-TATA-binding 98.6 5.5E-08 1.2E-12 100.5 7.1 81 231-311 402-483 (940)
137 KOG0533 RRM motif-containing p 98.6 9.6E-08 2.1E-12 92.1 7.8 80 234-313 83-162 (243)
138 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.1E-07 2.3E-12 98.4 8.4 82 36-117 401-483 (940)
139 KOG0153 Predicted RNA-binding 98.6 2E-07 4.3E-12 91.7 8.6 75 39-118 227-302 (377)
140 KOG0112 Large RNA-binding prot 98.5 4.9E-08 1.1E-12 106.4 3.5 161 128-313 369-531 (975)
141 KOG0112 Large RNA-binding prot 98.5 8.4E-08 1.8E-12 104.6 5.0 180 16-210 349-531 (975)
142 KOG0533 RRM motif-containing p 98.5 6E-07 1.3E-11 86.6 8.6 81 38-118 81-161 (243)
143 KOG0151 Predicted splicing reg 98.3 1.1E-06 2.3E-11 93.7 6.7 81 231-311 171-255 (877)
144 KOG4660 Protein Mei2, essentia 98.3 5.6E-07 1.2E-11 93.9 4.2 174 128-312 72-249 (549)
145 PF04059 RRM_2: RNA recognitio 98.2 8.5E-06 1.8E-10 67.4 9.1 76 132-207 2-84 (97)
146 KOG4849 mRNA cleavage factor I 98.2 0.00014 2.9E-09 71.8 18.6 77 132-208 81-160 (498)
147 PF04059 RRM_2: RNA recognitio 98.2 1.2E-05 2.7E-10 66.5 9.3 79 235-313 2-87 (97)
148 PF11608 Limkain-b1: Limkain b 98.2 1E-05 2.2E-10 63.7 7.7 71 42-121 4-79 (90)
149 KOG0116 RasGAP SH3 binding pro 98.1 4.4E-06 9.6E-11 87.1 7.5 75 42-117 290-365 (419)
150 KOG0116 RasGAP SH3 binding pro 98.1 3.2E-06 7E-11 88.1 6.3 78 233-311 287-365 (419)
151 KOG4209 Splicing factor RNPS1, 98.1 3.1E-06 6.7E-11 82.0 5.3 79 232-311 99-178 (231)
152 PF11608 Limkain-b1: Limkain b 98.0 3E-05 6.6E-10 61.1 7.6 70 235-313 3-77 (90)
153 KOG4209 Splicing factor RNPS1, 98.0 9.1E-06 2E-10 78.7 5.7 84 35-119 96-180 (231)
154 KOG2193 IGF-II mRNA-binding pr 97.8 5.2E-06 1.1E-10 83.5 1.0 155 132-314 2-158 (584)
155 KOG0151 Predicted splicing reg 97.8 2.9E-05 6.3E-10 83.1 6.6 78 131-208 174-255 (877)
156 KOG4676 Splicing factor, argin 97.8 2E-05 4.3E-10 78.9 4.8 154 40-198 7-214 (479)
157 PF08777 RRM_3: RNA binding mo 97.8 5.8E-05 1.3E-09 63.9 6.6 77 234-315 1-82 (105)
158 KOG2193 IGF-II mRNA-binding pr 97.8 6.9E-06 1.5E-10 82.7 0.5 155 41-210 2-157 (584)
159 KOG4676 Splicing factor, argin 97.6 2E-05 4.4E-10 78.7 0.8 172 133-309 9-222 (479)
160 KOG1995 Conserved Zn-finger pr 97.5 9.9E-05 2.1E-09 73.7 4.7 82 233-314 65-155 (351)
161 KOG1924 RhoA GTPase effector D 97.5 0.00083 1.8E-08 73.0 11.0 16 51-66 82-97 (1102)
162 KOG2314 Translation initiation 97.4 0.00032 6.9E-09 73.5 6.2 79 233-311 57-142 (698)
163 KOG0115 RNA-binding protein p5 97.3 0.00057 1.2E-08 65.2 7.1 88 4-103 7-94 (275)
164 PF08777 RRM_3: RNA binding mo 97.3 0.00052 1.1E-08 58.1 6.0 68 42-114 3-75 (105)
165 KOG0943 Predicted ubiquitin-pr 97.3 9.6E-05 2.1E-09 82.7 1.8 67 493-559 2607-2675(3015)
166 KOG0115 RNA-binding protein p5 97.3 0.00051 1.1E-08 65.5 6.4 88 185-297 7-94 (275)
167 KOG1924 RhoA GTPase effector D 97.2 0.0026 5.6E-08 69.4 11.5 10 516-525 718-727 (1102)
168 KOG1995 Conserved Zn-finger pr 97.2 0.00046 1E-08 69.0 5.1 85 35-119 61-154 (351)
169 KOG2314 Translation initiation 97.1 0.0013 2.8E-08 69.2 7.6 78 39-117 57-142 (698)
170 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0016 3.4E-08 47.8 5.3 52 235-292 2-53 (53)
171 COG5175 MOT2 Transcriptional r 97.0 0.0018 4E-08 63.8 6.9 78 133-210 116-203 (480)
172 KOG1855 Predicted RNA-binding 97.0 0.0012 2.7E-08 67.2 5.7 86 20-105 211-310 (484)
173 COG5175 MOT2 Transcriptional r 96.9 0.0026 5.6E-08 62.7 7.5 82 232-313 112-203 (480)
174 KOG1855 Predicted RNA-binding 96.9 0.0014 3E-08 66.9 5.5 97 108-204 203-318 (484)
175 KOG2202 U2 snRNP splicing fact 96.8 0.00051 1.1E-08 65.7 1.7 69 249-317 83-152 (260)
176 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0051 1.1E-07 51.4 7.3 71 40-112 6-84 (100)
177 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0034 7.4E-08 46.0 5.1 52 41-98 2-53 (53)
178 KOG3152 TBP-binding protein, a 96.7 0.0013 2.8E-08 62.7 3.2 72 39-110 73-157 (278)
179 KOG1996 mRNA splicing factor [ 96.6 0.0058 1.3E-07 59.3 7.4 81 237-317 284-371 (378)
180 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0081 1.7E-07 50.2 7.1 75 234-310 6-89 (100)
181 PF08952 DUF1866: Domain of un 96.3 0.016 3.5E-07 51.4 7.3 56 250-313 52-107 (146)
182 KOG2202 U2 snRNP splicing fact 96.2 0.0026 5.5E-08 61.0 2.2 62 55-116 83-145 (260)
183 KOG2416 Acinus (induces apopto 96.2 0.011 2.4E-07 62.7 7.0 83 232-319 442-528 (718)
184 KOG3152 TBP-binding protein, a 96.0 0.0062 1.3E-07 58.3 3.6 70 235-304 75-157 (278)
185 KOG1996 mRNA splicing factor [ 95.7 0.028 6E-07 54.8 6.5 64 145-208 300-365 (378)
186 KOG2416 Acinus (induces apopto 95.4 0.017 3.7E-07 61.4 4.3 76 36-116 440-519 (718)
187 PF08675 RNA_bind: RNA binding 94.9 0.089 1.9E-06 41.9 6.1 56 132-194 9-64 (87)
188 PF10309 DUF2414: Protein of u 94.9 0.14 3E-06 38.6 6.9 54 235-295 6-62 (62)
189 PF10309 DUF2414: Protein of u 94.6 0.19 4.2E-06 37.8 7.0 53 41-101 6-62 (62)
190 PF15023 DUF4523: Protein of u 94.4 0.17 3.8E-06 44.3 7.3 76 229-311 81-160 (166)
191 PF08952 DUF1866: Domain of un 94.3 0.13 2.8E-06 45.7 6.5 56 147-210 52-107 (146)
192 KOG2591 c-Mpl binding protein, 94.0 0.17 3.6E-06 53.8 7.6 70 234-309 175-248 (684)
193 PF15023 DUF4523: Protein of u 93.6 0.22 4.8E-06 43.7 6.4 73 37-116 83-159 (166)
194 PF08675 RNA_bind: RNA binding 93.4 0.31 6.7E-06 38.8 6.4 54 41-102 10-63 (87)
195 PF10567 Nab6_mRNP_bdg: RNA-re 93.1 2.4 5.2E-05 41.9 13.3 183 130-313 14-232 (309)
196 KOG2591 c-Mpl binding protein, 92.9 0.26 5.6E-06 52.4 6.8 69 130-204 174-246 (684)
197 KOG2068 MOT2 transcription fac 92.4 0.072 1.6E-06 53.4 2.0 81 233-313 76-163 (327)
198 PF04847 Calcipressin: Calcipr 91.9 0.37 8E-06 45.2 5.9 60 247-311 8-69 (184)
199 PF07576 BRAP2: BRCA1-associat 91.8 1.7 3.6E-05 37.1 9.3 66 42-108 15-81 (110)
200 PF10567 Nab6_mRNP_bdg: RNA-re 91.1 4.3 9.3E-05 40.2 12.4 168 40-208 15-230 (309)
201 PF07576 BRAP2: BRCA1-associat 91.0 1.7 3.7E-05 37.0 8.6 67 132-199 13-81 (110)
202 KOG2253 U1 snRNP complex, subu 90.9 0.014 2.9E-07 63.1 -5.2 69 130-206 39-107 (668)
203 KOG2068 MOT2 transcription fac 90.6 0.13 2.9E-06 51.5 1.7 78 133-210 79-163 (327)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 90.3 0.29 6.3E-06 45.6 3.6 69 40-108 7-82 (176)
205 KOG2893 Zn finger protein [Gen 90.3 3.8 8.3E-05 39.0 10.9 15 275-289 48-62 (341)
206 PF07292 NID: Nmi/IFP 35 domai 90.3 0.43 9.4E-06 38.8 4.1 70 84-153 1-74 (88)
207 KOG0804 Cytoplasmic Zn-finger 89.9 1.5 3.4E-05 45.7 8.7 69 39-108 73-142 (493)
208 KOG0804 Cytoplasmic Zn-finger 89.8 1.1 2.3E-05 46.8 7.4 110 131-247 74-190 (493)
209 KOG4285 Mitotic phosphoprotein 89.6 0.92 2E-05 44.8 6.4 60 43-109 200-259 (350)
210 PF11767 SET_assoc: Histone ly 89.2 1.7 3.6E-05 33.3 6.4 56 244-307 10-65 (66)
211 KOG2253 U1 snRNP complex, subu 89.2 0.06 1.3E-06 58.3 -2.0 70 38-115 38-107 (668)
212 PF03880 DbpA: DbpA RNA bindin 88.8 1.2 2.6E-05 35.0 5.6 59 244-310 11-74 (74)
213 KOG4285 Mitotic phosphoprotein 88.4 1.5 3.2E-05 43.4 7.0 73 234-313 197-270 (350)
214 PF04847 Calcipressin: Calcipr 88.0 1.1 2.5E-05 41.9 5.8 59 53-116 8-68 (184)
215 KOG4574 RNA-binding protein (c 87.8 0.31 6.6E-06 54.4 2.1 72 237-313 301-374 (1007)
216 PF11767 SET_assoc: Histone ly 87.6 2.6 5.6E-05 32.3 6.5 54 51-112 11-64 (66)
217 KOG2135 Proteins containing th 86.7 0.32 6.9E-06 50.8 1.4 72 236-313 374-446 (526)
218 KOG2318 Uncharacterized conser 86.7 2.1 4.6E-05 46.0 7.5 128 37-207 171-305 (650)
219 PF03467 Smg4_UPF3: Smg-4/UPF3 86.7 1 2.2E-05 42.0 4.7 69 233-301 6-81 (176)
220 KOG2135 Proteins containing th 86.5 0.38 8.2E-06 50.3 1.9 62 52-119 385-446 (526)
221 PF14111 DUF4283: Domain of un 81.6 1.2 2.5E-05 40.3 2.7 109 51-164 28-138 (153)
222 KOG2893 Zn finger protein [Gen 81.0 54 0.0012 31.5 18.0 23 271-293 48-70 (341)
223 PF03880 DbpA: DbpA RNA bindin 77.4 6.4 0.00014 30.8 5.3 59 141-207 11-74 (74)
224 PF07292 NID: Nmi/IFP 35 domai 76.9 0.87 1.9E-05 37.0 0.3 71 175-255 1-73 (88)
225 KOG4410 5-formyltetrahydrofola 75.3 6 0.00013 38.8 5.5 45 43-91 333-377 (396)
226 PHA03378 EBNA-3B; Provisional 68.8 1.6E+02 0.0035 33.0 14.7 18 492-509 840-857 (991)
227 KOG2318 Uncharacterized conser 68.0 13 0.00028 40.3 6.5 79 232-310 172-305 (650)
228 PRK14548 50S ribosomal protein 63.9 27 0.00058 28.2 6.1 58 42-101 22-81 (84)
229 KOG4019 Calcineurin-mediated s 62.4 5.4 0.00012 36.7 2.1 73 235-312 11-89 (193)
230 KOG2891 Surface glycoprotein [ 58.7 40 0.00087 33.1 7.4 104 50-164 47-194 (445)
231 PF03468 XS: XS domain; Inter 58.6 12 0.00026 32.3 3.5 50 42-93 10-68 (116)
232 PHA03378 EBNA-3B; Provisional 57.7 1.3E+02 0.0029 33.6 11.7 12 234-245 538-549 (991)
233 KOG4574 RNA-binding protein (c 56.3 6.8 0.00015 44.2 2.0 71 134-209 301-373 (1007)
234 TIGR03636 L23_arch archaeal ri 55.4 49 0.0011 26.2 6.2 58 42-101 15-74 (77)
235 PRK14548 50S ribosomal protein 53.4 45 0.00098 26.9 5.8 58 133-192 22-81 (84)
236 PF03468 XS: XS domain; Inter 46.7 16 0.00035 31.5 2.4 50 236-287 10-68 (116)
237 TIGR02542 B_forsyth_147 Bacter 45.4 32 0.00068 29.2 3.8 103 48-182 11-129 (145)
238 PF15513 DUF4651: Domain of un 45.0 39 0.00085 25.5 3.9 20 249-268 9-28 (62)
239 TIGR03636 L23_arch archaeal ri 44.4 79 0.0017 25.0 5.8 57 236-294 15-73 (77)
240 KOG4365 Uncharacterized conser 44.3 4.9 0.00011 41.9 -1.3 80 236-316 5-85 (572)
241 KOG4483 Uncharacterized conser 44.3 47 0.001 34.5 5.6 64 235-305 392-456 (528)
242 PF14111 DUF4283: Domain of un 44.0 23 0.00049 31.7 3.2 85 172-269 55-140 (153)
243 KOG2236 Uncharacterized conser 42.9 1E+02 0.0022 32.9 7.8 8 134-141 187-194 (483)
244 COG5638 Uncharacterized conser 41.7 47 0.001 34.5 5.2 42 38-79 144-190 (622)
245 KOG2236 Uncharacterized conser 40.8 1E+02 0.0023 32.8 7.6 15 280-295 319-333 (483)
246 PTZ00191 60S ribosomal protein 40.4 88 0.0019 28.0 6.1 56 43-100 84-141 (145)
247 KOG4483 Uncharacterized conser 40.1 84 0.0018 32.7 6.6 66 28-99 378-445 (528)
248 KOG2295 C2H2 Zn-finger protein 36.4 6 0.00013 42.5 -2.1 68 40-107 231-299 (648)
249 KOG2891 Surface glycoprotein [ 35.7 43 0.00094 32.9 3.7 67 234-300 149-247 (445)
250 KOG3424 40S ribosomal protein 34.8 93 0.002 26.6 5.0 46 141-187 33-84 (132)
251 COG5594 Uncharacterized integr 34.5 14 0.0003 42.0 0.2 163 36-210 204-396 (827)
252 KOG4213 RNA-binding protein La 34.0 51 0.0011 30.4 3.6 50 52-101 118-170 (205)
253 PF15513 DUF4651: Domain of un 33.8 77 0.0017 23.9 3.9 19 146-164 9-27 (62)
254 PF15063 TC1: Thyroid cancer p 31.5 24 0.00051 27.6 0.9 35 28-67 18-52 (79)
255 KOG0307 Vesicle coat complex C 30.3 1E+03 0.022 28.5 16.5 213 328-548 795-1019(1049)
256 PTZ00191 60S ribosomal protein 28.1 1.6E+02 0.0036 26.3 5.7 56 133-190 83-140 (145)
257 cd04880 ACT_AAAH-PDT-like ACT 27.5 2.5E+02 0.0055 21.4 6.4 51 53-103 12-66 (75)
258 PF03439 Spt5-NGN: Early trans 27.4 84 0.0018 25.2 3.6 34 66-103 33-66 (84)
259 KOG2375 Protein interacting wi 27.4 3.8E+02 0.0082 30.8 9.7 10 176-185 296-305 (756)
260 cd04905 ACT_CM-PDT C-terminal 26.0 2.5E+02 0.0055 21.8 6.2 51 53-103 14-68 (80)
261 cd04908 ACT_Bt0572_1 N-termina 25.8 2.8E+02 0.006 20.6 7.1 45 53-100 14-59 (66)
262 COG5180 PBP1 Protein interacti 25.7 6.8E+02 0.015 27.0 10.4 6 143-148 220-225 (654)
263 KOG2295 C2H2 Zn-finger protein 24.3 13 0.00027 40.2 -2.2 69 131-199 231-300 (648)
264 PF08544 GHMP_kinases_C: GHMP 23.3 2.5E+02 0.0054 21.8 5.8 45 54-102 36-80 (85)
265 TIGR03793 TOMM_pelo TOMM prope 21.5 3.7E+02 0.0079 21.3 6.0 49 5-60 25-74 (77)
266 cd04904 ACT_AAAH ACT domain of 21.3 2.9E+02 0.0063 21.2 5.6 48 54-103 14-65 (74)
267 KOG4365 Uncharacterized conser 21.3 21 0.00045 37.4 -1.3 77 132-209 4-81 (572)
268 PF02714 DUF221: Domain of unk 21.2 1.3E+02 0.0027 30.8 4.5 34 175-210 1-34 (325)
269 KOG4410 5-formyltetrahydrofola 20.9 1.2E+02 0.0025 30.2 3.7 48 234-286 330-378 (396)
270 cd06404 PB1_aPKC PB1 domain is 20.7 4.6E+02 0.0099 21.1 8.2 57 40-101 8-68 (83)
271 PF13689 DUF4154: Domain of un 20.4 5.9E+02 0.013 22.4 8.2 65 7-78 38-102 (145)
272 KOG4672 Uncharacterized conser 20.1 7.4E+02 0.016 26.2 9.3 23 237-259 219-241 (487)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.1e-88 Score=751.37 Aligned_cols=508 Identities=52% Similarity=0.826 Sum_probs=390.6
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCc
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS 80 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~s 80 (575)
|.+.+||++||+++|+..|+|++|||+|++++++.++++.++|||+|||.++|+++|+++|+.||.|.+|++.++.+|.+
T Consensus 49 F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~s 128 (562)
T TIGR01628 49 FQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKS 128 (562)
T ss_pred ECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeE
Q 008162 81 KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160 (575)
Q Consensus 81 kG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~ 160 (575)
+|||||+|++.++|.+|++++||..+.|+.++|..+..+.++.. .....+++|||+||+.++|+++|+++|+.||.|.+
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~-~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREA-APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccccc-ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999998877666531 23456789999999999999999999999999999
Q ss_pred EEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeC----CeeEEEcccccchhHHHHHhhhHHhhhhhcccccccee
Q 008162 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 236 (575)
Q Consensus 161 i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (575)
+.++++.+|+++|||||+|++.++|.+|++.+++..+. |+.++|.++.++.++..++.........+......+++
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~ 287 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVN 287 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCE
Confidence 99999999999999999999999999999999999999 99999999999988887777776666666666778899
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHHHH
Q 008162 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316 (575)
Q Consensus 237 l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~~r 316 (575)
|||+||++++|+++|+++|+.||.|++|+|+.+.+|.++|||||+|.+.++|.+|+.+|||+.++|++|+|.++.+++.+
T Consensus 288 l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 288 LYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCcCcC
Q 008162 317 RARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQA-GFGYQQQLVPGMRPAGAPMPNFFVPVV 395 (575)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~pp~~-~~~~~~~~~p~~~p~~~~~p~~~~p~~ 395 (575)
..+++.++.+..+..... +.. + +.++.++++.++++.+.+++++++ +|+ ++ +++++.++|+.
T Consensus 368 ~~~~~~~~~q~~~~~~~~--~~~---~-p~~~~~~~p~~~~~~~~~~~~~~p~~~~-------~~----~~~~~~~~~~~ 430 (562)
T TIGR01628 368 RAHLQDQFMQLQPRMRQL--PMG---S-PMGGAMGQPPYYGQGPQQQFNGQPLGWP-------RM----SMMPTPMGPGG 430 (562)
T ss_pred HHHHHHHHHHhhhhccCC--CCC---C-CCCCcccCCCccCCCCcccCCCCCCCCC-------CC----CCCCCCCCCCC
Confidence 998888877632211110 000 0 001111112122221111111111 111 00 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 008162 396 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ 474 (575)
Q Consensus 396 ~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~p~-~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 474 (575)
+.++ .+. .++.+++.++....+..++. .+.++|+++.+. . +.++. +++.++..+.
T Consensus 431 ~~~p-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~----------~~~~~----~~~~~~~~~~ 486 (562)
T TIGR01628 431 PLRP-----NGL---APMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQS--L----------PLSQD----LPQPQSTASQ 486 (562)
T ss_pred CCCC-----CCC---CCCCcCCCCCcccccccccccCCCcCCCccccC--C----------CCCcc----cccccCCccc
Confidence 0000 000 00000000000000000000 001112221000 0 00000 1111111223
Q ss_pred CCccccchhhhhcCChHHHHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHH
Q 008162 475 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 550 (575)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~ 550 (575)
+.+.++++++||++++++||++|||+|||+|++++|++|+||||||||||++|||+||||+|+|++||+||++||+
T Consensus 487 ~~~~~~~~~~la~~~p~~q~~~lg~~~~~~~~~~~~~~~~~~tgm~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (562)
T TIGR01628 487 GGQNKKLAQVLASATPQMQKQVLGERLFPLVEAIEPALAAKITGMLLEMDNSELLHLLESPELLKSKVDEALEVLK 562 (562)
T ss_pred cccchhHHHHHhhCCHHHHHHHHHHHhHHHHHhhChhhcCcceEEEecCCHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999999994
No 2
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-53 Score=438.92 Aligned_cols=318 Identities=64% Similarity=0.976 Sum_probs=302.0
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCc
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS 80 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~s 80 (575)
|.+++||+|||++|||+.|+|++||||||+||+++ |||+||+.++|.++|+++|+.||+|+|||+.++.+| +
T Consensus 44 f~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~ 115 (369)
T KOG0123|consen 44 FQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-S 115 (369)
T ss_pred cCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-c
Confidence 88999999999999999999999999999999998 999999999999999999999999999999999988 9
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhhhh--ccCCceEEEeCCCcCCCHHHHHHHhccCCCe
Q 008162 81 KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 158 (575)
Q Consensus 81 kG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~--~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i 158 (575)
+|| ||+|+++++|++|++.+||.++.|++|+|+.+.++.++..... ....+++++.|++.+.++++|.++|+.||.|
T Consensus 116 kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i 194 (369)
T KOG0123|consen 116 KGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSI 194 (369)
T ss_pred eee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcc
Confidence 999 9999999999999999999999999999999998887654333 3667899999999999999999999999999
Q ss_pred eEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEE
Q 008162 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 238 (575)
Q Consensus 159 ~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (575)
.++.++.+..|++++|+||+|+++++|..|++.+++..+.+..++|.+++++.++...++..+..............+||
T Consensus 195 ~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~ 274 (369)
T KOG0123|consen 195 TSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLY 274 (369)
T ss_pred eEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888887777777788899999
Q ss_pred EecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHHHHHH
Q 008162 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318 (575)
Q Consensus 239 V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~~r~~ 318 (575)
|.|++..++++.|++.|+.||+|++++|+.+..|.++||+||+|.+.++|.+|+..+|+..+.++.|+|.+++++..+.+
T Consensus 275 vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~ 354 (369)
T KOG0123|consen 275 VKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRA 354 (369)
T ss_pred cccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhhhcC
Q 008162 319 RLQAQFSQM 327 (575)
Q Consensus 319 ~~~~~~~~~ 327 (575)
+++.++++.
T Consensus 355 ~~~~~~~~~ 363 (369)
T KOG0123|consen 355 RLQAVFGAR 363 (369)
T ss_pred hhhhhccee
Confidence 877766654
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.5e-44 Score=375.92 Aligned_cols=269 Identities=29% Similarity=0.507 Sum_probs=227.9
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..+|||+|||.++++++|+++|+.||+|.+|+|+.| .+|.++|||||+|.+.++|.+||+.|||..+.|+.|.|.+...
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 568999999999999999999999999999999998 5789999999999999999999999999999999999988754
Q ss_pred hhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCee
Q 008162 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKF 197 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~ 197 (575)
... ....++|||+|||.++++++|+++|+.||.|..+.++.+ .++.++|||||+|++.++|++|++.||+..+
T Consensus 83 ~~~------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~ 156 (352)
T TIGR01661 83 SSD------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTP 156 (352)
T ss_pred ccc------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCcc
Confidence 332 124568999999999999999999999999999999887 4789999999999999999999999999998
Q ss_pred CC--eeEEEcccccchhHHH-HHhh--------hHH--------------------------------------------
Q 008162 198 DD--REWYVGKAQKKSEREQ-ELKG--------QFE-------------------------------------------- 222 (575)
Q Consensus 198 ~g--~~l~v~~a~~~~~~~~-~~~~--------~~~-------------------------------------------- 222 (575)
.| ..|.+.++........ .... ...
T Consensus 157 ~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T TIGR01661 157 SGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVA 236 (352)
T ss_pred CCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccc
Confidence 77 5677777643321000 0000 000
Q ss_pred ---------h------------hhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEE
Q 008162 223 ---------Q------------AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFV 280 (575)
Q Consensus 223 ---------~------------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV 280 (575)
. ..........+.+|||+|||+.+++++|+++|++||.|++++|+.|. +|.+||||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 237 QQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEE
Confidence 0 00000002234479999999999999999999999999999999997 8999999999
Q ss_pred EeCCHHHHHHHHHHhCCceecceeeeeehhccHH
Q 008162 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314 (575)
Q Consensus 281 ~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~ 314 (575)
+|.+.++|.+|+..|||..++|+.|.|.|+..+.
T Consensus 317 ~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999999999999988764
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.9e-43 Score=386.95 Aligned_cols=259 Identities=39% Similarity=0.662 Sum_probs=234.1
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchh
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~ 120 (575)
+|||+|||.++||++|+++|+.||.|.+|+|++|. ++.++|||||.|.+.++|.+|++.+|+..++|+.|.|.+..+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999994 58899999999999999999999999999999999998875432
Q ss_pred hhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCe
Q 008162 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200 (575)
Q Consensus 121 ~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~ 200 (575)
.. .....++|||+||+.++++++|+++|+.||.|.+|.+..+.+|+++|||||+|++.++|.+|++.+++..+.++
T Consensus 82 ~~----~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 82 SL----RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred cc----cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 21 12345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEE
Q 008162 201 EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280 (575)
Q Consensus 201 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV 280 (575)
.|++.....+.++.. ......++|||+||+.++|+++|+++|+.||.|++++++.+.+|.++|||||
T Consensus 158 ~i~v~~~~~~~~~~~-------------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV 224 (562)
T TIGR01628 158 EVYVGRFIKKHEREA-------------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFV 224 (562)
T ss_pred eEEEecccccccccc-------------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEE
Confidence 999987765544320 1122346899999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCceec----ceeeeeehhccHHHHH
Q 008162 281 AFSTPEEASRALAEMNGKMIV----SKPLYVAVAQRKEERR 317 (575)
Q Consensus 281 ~f~s~~~A~~A~~~lng~~i~----g~~l~V~~a~~~~~r~ 317 (575)
.|.+.++|.+|++.|||..+. |+.|.|..+..+.++.
T Consensus 225 ~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~ 265 (562)
T TIGR01628 225 NFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAERE 265 (562)
T ss_pred EECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhH
Confidence 999999999999999999999 9999999998876664
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.8e-41 Score=332.69 Aligned_cols=249 Identities=28% Similarity=0.428 Sum_probs=220.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-CCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI-NDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i-~g~~v~v~~ 115 (575)
..-+.|||+.||.++.|++|..+|.+.|+|-+++++.| .+|.++|||||.|.+.++|.+||+.||++.| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 34568999999999999999999999999999999999 7999999999999999999999999999987 578887765
Q ss_pred ecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCC-eeEEEEEeC--CCCCcceeEEEEeCCHHHHHHHHHHH
Q 008162 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT-ITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEAL 192 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~-i~~i~i~~d--~~g~skg~afV~F~~~e~A~~Ai~~l 192 (575)
+ ..+++|||+|+|+++++++|++.|++.++ |.+|.+..+ +..++||||||+|+++.+|..|-+.|
T Consensus 161 S------------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 161 S------------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred e------------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 4 44678999999999999999999999985 667777655 46789999999999999999999887
Q ss_pred C--CCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC
Q 008162 193 N--GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 270 (575)
Q Consensus 193 ~--~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~ 270 (575)
- ..+++|..+.|.||.+..+.....-. +-..|||+||+.++|+|.|+++|+.||.|+.|+.++|
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ded~ms-------------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD- 294 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDEDTMS-------------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD- 294 (506)
T ss_pred cCCceeecCCcceeeccCcccCCChhhhh-------------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-
Confidence 4 45679999999999887665543221 1236999999999999999999999999999998877
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHHHHHH
Q 008162 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 318 (575)
Q Consensus 271 ~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~~r~~ 318 (575)
||||.|.+.++|.+|++.+||+.|+|..|.|.+|++..+++.
T Consensus 295 ------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 295 ------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred ------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 999999999999999999999999999999999998766653
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.3e-40 Score=357.67 Aligned_cols=304 Identities=20% Similarity=0.235 Sum_probs=239.2
Q ss_pred CCCHHHHHHHHHHh--CCCccCCeeEEEEeCCCCCCCCC----------CCCCeEEEcCCCCCcCHHHHHHHHhhcCCee
Q 008162 1 MFMLSSAARALDVL--NFTPLNNKSIRIMYSHRDPSIRK----------SGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 68 (575)
Q Consensus 1 f~~~~dA~~a~~~~--n~~~i~g~~iri~~s~~~~~~r~----------~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~ 68 (575)
|.+.|+|++|++.+ |...|.|++|+|.|+......+. +...+|||+||+.++|+++|+++|+.||.|.
T Consensus 45 f~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~ 124 (481)
T TIGR01649 45 FEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL 124 (481)
T ss_pred eCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE
Confidence 78999999999974 78899999999999865432221 2234799999999999999999999999999
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEeeecchh--------------------hhhhhh
Q 008162 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND--KQVFVGHFLRKQ--------------------ERETVA 126 (575)
Q Consensus 69 ~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g--~~v~v~~~~~~~--------------------~~~~~~ 126 (575)
+|++.++. .+++|||+|.+.++|.+|++.|||..|.+ ..+.|.++.... ++....
T Consensus 125 ~v~i~~~~---~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~ 201 (481)
T TIGR01649 125 RIVTFTKN---NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGL 201 (481)
T ss_pred EEEEEecC---CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCc
Confidence 99998753 24799999999999999999999999865 356665543210 000000
Q ss_pred ---------------------------------------------------------------------hccCCceEEEe
Q 008162 127 ---------------------------------------------------------------------IKTKFNNVFVK 137 (575)
Q Consensus 127 ---------------------------------------------------------------------~~~~~~~v~V~ 137 (575)
.....++|||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 281 (481)
T TIGR01649 202 DQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVS 281 (481)
T ss_pred CccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEe
Confidence 00134689999
Q ss_pred CCCc-CCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHH
Q 008162 138 NLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 216 (575)
Q Consensus 138 nLp~-~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~ 216 (575)
||+. .+++++|+++|+.||.|.+|+++.+. +|||||+|.+.++|..|++.||+..+.|+.|+|.++.........
T Consensus 282 nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~ 357 (481)
T TIGR01649 282 GLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPR 357 (481)
T ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCC
Confidence 9997 69999999999999999999999863 689999999999999999999999999999999887543211000
Q ss_pred -------Hh--hhHHhhhhhc----------cccccceeEEEecCCCCCCHHHHHHHhhhcCC--eeEEEEeeCCCCCCC
Q 008162 217 -------LK--GQFEQAMKET----------VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVMRDPSGISK 275 (575)
Q Consensus 217 -------~~--~~~~~~~~~~----------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~--v~~~~i~~~~~g~sk 275 (575)
.. ..+....... ....++.+|||+|||+++|+++|+++|+.||. |+.++++.+.++ ++
T Consensus 358 ~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~ 436 (481)
T TIGR01649 358 EGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RS 436 (481)
T ss_pred CCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cc
Confidence 00 0000000000 00134678999999999999999999999998 888998766544 58
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCceeccee------eeeehhcc
Q 008162 276 GSGFVAFSTPEEASRALAEMNGKMIVSKP------LYVAVAQR 312 (575)
Q Consensus 276 g~afV~f~s~~~A~~A~~~lng~~i~g~~------l~V~~a~~ 312 (575)
++|||+|.+.++|.+|+..|||..|.++. |+|+++++
T Consensus 437 ~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 437 KMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred eeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 99999999999999999999999999885 99998864
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.3e-40 Score=354.84 Aligned_cols=279 Identities=24% Similarity=0.346 Sum_probs=227.0
Q ss_pred HHHHHHHHHHhCCCccCCeeEEEEeCCCCCC---CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCc
Q 008162 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPS---IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS 80 (575)
Q Consensus 4 ~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~---~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~s 80 (575)
.|+|.+||.++|...+........+...-+. ......++|||+|||.+++|++|+++|+.||.|.+|+|+.|.+|.+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~s 98 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQN 98 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCc
Confidence 4789999998886665554333322211110 1112347899999999999999999999999999999999999999
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCC-e
Q 008162 81 KGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT-I 158 (575)
Q Consensus 81 kG~afV~F~t~e~A~~Ai~~lng~~i~-g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~-i 158 (575)
+|||||+|.+.++|++||+.||+..+. |+.+.|..+ ...++|||+|||.++++++|.+.|++++. +
T Consensus 99 RGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egv 166 (578)
T TIGR01648 99 RGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGV 166 (578)
T ss_pred cceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc------------ccCceeEeecCCcchhhHHHHHHhhcccCCc
Confidence 999999999999999999999998885 666666432 23578999999999999999999999964 4
Q ss_pred eEEEEEeC--CCCCcceeEEEEeCCHHHHHHHHHHHCC--CeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccc
Q 008162 159 TSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEALNG--KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 234 (575)
Q Consensus 159 ~~i~i~~d--~~g~skg~afV~F~~~e~A~~Ai~~l~~--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (575)
.++.+... ..++++|||||+|+++++|..|++.|+. ..+.|+.|.|.++..+.+...+ .....
T Consensus 167 v~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-------------~~~~~ 233 (578)
T TIGR01648 167 VDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-------------VMAKV 233 (578)
T ss_pred eEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc-------------ccccc
Confidence 44444322 4578899999999999999999998864 4578999999998765432111 11123
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhc--CCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
.+|||+||++++|+++|+++|+.| |.|++|+++ ++||||+|.+.++|.+|++.|||..|.|+.|.|.|+++
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 589999999999999999999999 999999876 45999999999999999999999999999999999987
Q ss_pred HH
Q 008162 313 KE 314 (575)
Q Consensus 313 ~~ 314 (575)
+.
T Consensus 307 ~~ 308 (578)
T TIGR01648 307 VD 308 (578)
T ss_pred CC
Confidence 54
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-38 Score=295.13 Aligned_cols=233 Identities=25% Similarity=0.469 Sum_probs=196.4
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
-++|||+||+.+|||+-|..+|+..|.|.+|||+.|+ +.|.+....
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------~~v~wa~~p 51 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------LKVNWATAP 51 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------hccccccCc
Confidence 4689999999999999999999999999999999862 222222221
Q ss_pred hhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeC
Q 008162 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198 (575)
Q Consensus 120 ~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~ 198 (575)
..+.. ......-.|||+.|...++.|+|++.|.+||+|.+++|++| .++++||||||.|.+.++|++||..|||..|+
T Consensus 52 ~nQsk-~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG 130 (321)
T KOG0148|consen 52 GNQSK-PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG 130 (321)
T ss_pred ccCCC-CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec
Confidence 11111 11122457999999999999999999999999999999999 78999999999999999999999999999999
Q ss_pred CeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceE
Q 008162 199 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278 (575)
Q Consensus 199 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~a 278 (575)
+|.|+-.|+.+|..........+++... ......|+|||+||+.-+||++|++.|+.||.|.+|+|+++ +||+
T Consensus 131 ~R~IRTNWATRKp~e~n~~~ltfdeV~N--Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYa 203 (321)
T KOG0148|consen 131 RRTIRTNWATRKPSEMNGKPLTFDEVYN--QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYA 203 (321)
T ss_pred cceeeccccccCccccCCCCccHHHHhc--cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceE
Confidence 9999999999886333222223333332 23456789999999999999999999999999999999999 8999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecceeeeeehhccHH
Q 008162 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314 (575)
Q Consensus 279 fV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~ 314 (575)
||.|.+.|.|.+||..+||..|+|..++|.|.+...
T Consensus 204 FVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 204 FVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred EEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999999999999999988653
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5e-38 Score=290.68 Aligned_cols=268 Identities=30% Similarity=0.486 Sum_probs=228.6
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..+|.|.=||...|+++|+.+|...|.|++||+++| -+|.|.|||||.|.+++||++|+..|||..+..+.|+|++..+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 457999999999999999999999999999999999 5899999999999999999999999999999999999999876
Q ss_pred hhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCee
Q 008162 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKF 197 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~ 197 (575)
..+. .+..+|||.+||+.+|..||..+|++||.|...+|+.| -+|.+||.|||.|+..++|+.||+.|||.+=
T Consensus 121 Ss~~------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 121 SSDS------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred Chhh------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 5543 34568999999999999999999999999887777777 6899999999999999999999999999887
Q ss_pred CCe--eEEEcccccchhHHH--HHh--------------------hhHHhh--------h-----h----------hccc
Q 008162 198 DDR--EWYVGKAQKKSEREQ--ELK--------------------GQFEQA--------M-----K----------ETVD 230 (575)
Q Consensus 198 ~g~--~l~v~~a~~~~~~~~--~~~--------------------~~~~~~--------~-----~----------~~~~ 230 (575)
.|. .|.|.++...+.... .+. ...+.. + . -...
T Consensus 195 ~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred CCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 664 677777754432210 000 000000 0 0 0011
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
...+.||||-||..+.+|.-|..+|.+||.|..|+|++|. +.++|||+||.+.+.++|..|+.+|||..+++|.|.|+|
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 2247899999999999999999999999999999999997 589999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.8e-37 Score=335.19 Aligned_cols=262 Identities=23% Similarity=0.341 Sum_probs=209.9
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh--cCCccCCeeeEEeeec
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL--NGMLINDKQVFVGHFL 117 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l--ng~~i~g~~v~v~~~~ 117 (575)
++.|||+|||.++|+++|+++|+.||.|.+|++++ ++|||||+|++.++|.+|++.+ ++..+.|+.|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 67899999999999999999999999999999986 5789999999999999999864 7889999999999886
Q ss_pred chhhhhhh------hhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHH
Q 008162 118 RKQERETV------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191 (575)
Q Consensus 118 ~~~~~~~~------~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~ 191 (575)
.+...... .......+|+|+||++.+++++|+++|+.||.|.+|.++++. .+++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHH
Confidence 54311111 011233579999999999999999999999999999998763 246999999999999999999
Q ss_pred HCCCeeCC--eeEEEcccccc----------h----------hHHHHHhhh----HHh----------------h-----
Q 008162 192 LNGKKFDD--REWYVGKAQKK----------S----------EREQELKGQ----FEQ----------------A----- 224 (575)
Q Consensus 192 l~~~~~~g--~~l~v~~a~~~----------~----------~~~~~~~~~----~~~----------------~----- 224 (575)
|||..+.+ +.|.|.++... + +++..+... ... .
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999965 36666665421 1 000000000 000 0
Q ss_pred ---------------hh-----------------hccccccceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeeCCC
Q 008162 225 ---------------MK-----------------ETVDKFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPS 271 (575)
Q Consensus 225 ---------------~~-----------------~~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~i~~~~~ 271 (575)
.. .......+++|||+||++ .+|+++|+++|+.||.|.+|+|+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 00 000122567999999997 6999999999999999999999987
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 272 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 272 g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
.+|||||+|.+.++|.+|+..|||..|.|+.|+|.+++.+
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3789999999999999999999999999999999987543
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.2e-35 Score=321.13 Aligned_cols=272 Identities=26% Similarity=0.422 Sum_probs=220.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..++|||+|||.++++++|+++|+.||.|.+|+++.| .+|.++|||||+|.+.++|.+||. ++|..+.|+.|.|....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 3668999999999999999999999999999999998 578899999999999999999995 89999999999998765
Q ss_pred chhhhhhhhh------ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHH
Q 008162 118 RKQERETVAI------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 190 (575)
Q Consensus 118 ~~~~~~~~~~------~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~ 190 (575)
.......... ....++|||+|||..+++++|+++|+.||.|..|.++.+ .+|+++|||||+|.+.++|.+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~ 246 (457)
T TIGR01622 167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALE 246 (457)
T ss_pred hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 4332221100 122578999999999999999999999999999999988 467999999999999999999999
Q ss_pred HHCCCeeCCeeEEEcccccchhHHH------------------------HHhhhH---H---------------------
Q 008162 191 ALNGKKFDDREWYVGKAQKKSEREQ------------------------ELKGQF---E--------------------- 222 (575)
Q Consensus 191 ~l~~~~~~g~~l~v~~a~~~~~~~~------------------------~~~~~~---~--------------------- 222 (575)
.|+|..+.|+.|.|.++........ .+.... .
T Consensus 247 ~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (457)
T TIGR01622 247 VMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQ 326 (457)
T ss_pred hcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccc
Confidence 9999999999999999653211100 000000 0
Q ss_pred h--------------hh------h----hccccccceeEEEecCCCCCC----------HHHHHHHhhhcCCeeEEEEee
Q 008162 223 Q--------------AM------K----ETVDKFQGLNLYIKNLGDSID----------DEKLKELFSEFGTITSCKVMR 268 (575)
Q Consensus 223 ~--------------~~------~----~~~~~~~~~~l~V~nl~~~~t----------~~~l~~~F~~~G~v~~~~i~~ 268 (575)
. .. . .........+|+|.|+-...+ .+||++.|++||.|++|.|..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~ 406 (457)
T TIGR01622 327 RDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT 406 (457)
T ss_pred ccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC
Confidence 0 00 0 000123467899999954443 368999999999999999874
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHH
Q 008162 269 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314 (575)
Q Consensus 269 ~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~ 314 (575)
. .+.|++||.|.+.++|.+|++.|||+.++|+.|.|.+.....
T Consensus 407 ~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 407 K---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred C---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 3 357999999999999999999999999999999999987654
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.7e-36 Score=294.74 Aligned_cols=292 Identities=28% Similarity=0.461 Sum_probs=235.7
Q ss_pred CccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHH
Q 008162 17 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 95 (575)
Q Consensus 17 ~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~ 95 (575)
..+.|-.++---+...++-.....-++||+-+|++++|+||+++|++||.|.+|.|++| .++.++|||||.|.+.++|.
T Consensus 11 ~~~~gs~~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~ 90 (510)
T KOG0144|consen 11 SPCGGSSLADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEAD 90 (510)
T ss_pred CCCCCcchhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHH
Confidence 34455555543333334444456677999999999999999999999999999999999 68899999999999999999
Q ss_pred HHHHHhcCC-ccCC--eeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcc
Q 008162 96 NAIDKLNGM-LIND--KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK 172 (575)
Q Consensus 96 ~Ai~~lng~-~i~g--~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~sk 172 (575)
+|+..|++. .|.| ..|.|.+.....++. ...+.|||+-|++.++|.|++++|++||.|++|.|++|..+.+|
T Consensus 91 ~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sR 165 (510)
T KOG0144|consen 91 EAINALHNQKTLPGMHHPVQVKYADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSR 165 (510)
T ss_pred HHHHHhhcccccCCCCcceeecccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccccccc
Confidence 999999875 4544 456666665444432 23467999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCHHHHHHHHHHHCCCe-eCC--eeEEEcccccchhHHHHHhhh-----------------------------
Q 008162 173 CFGFVNFENADDAAKAVEALNGKK-FDD--REWYVGKAQKKSEREQELKGQ----------------------------- 220 (575)
Q Consensus 173 g~afV~F~~~e~A~~Ai~~l~~~~-~~g--~~l~v~~a~~~~~~~~~~~~~----------------------------- 220 (575)
|||||+|.+.|.|..||++||+.. ++| ..|.|.++..+.++..+....
T Consensus 166 GcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~ 245 (510)
T KOG0144|consen 166 GCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQ 245 (510)
T ss_pred ceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccC
Confidence 999999999999999999999855 555 478888887654332000000
Q ss_pred --------------------------------------------------------------------------------
Q 008162 221 -------------------------------------------------------------------------------- 220 (575)
Q Consensus 221 -------------------------------------------------------------------------------- 220 (575)
T Consensus 246 ~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s 325 (510)
T KOG0144|consen 246 GPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTS 325 (510)
T ss_pred chhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCccc
Confidence
Q ss_pred -------------------------------------------------HH--------hh-------------------
Q 008162 221 -------------------------------------------------FE--------QA------------------- 224 (575)
Q Consensus 221 -------------------------------------------------~~--------~~------------------- 224 (575)
++ ..
T Consensus 326 ~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~ 405 (510)
T KOG0144|consen 326 QNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQ 405 (510)
T ss_pred ccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhh
Confidence 00 00
Q ss_pred ---------hhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHH
Q 008162 225 ---------MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 294 (575)
Q Consensus 225 ---------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~ 294 (575)
..-..+...+.+|||.+||-+.-+.+|-..|..||.|.+.+++.|+ +|.|++|+||.|++..+|..||..
T Consensus 406 ~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~a 485 (510)
T KOG0144|consen 406 ATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISA 485 (510)
T ss_pred HhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHH
Confidence 0000122345679999999999999999999999999999999886 999999999999999999999999
Q ss_pred hCCceecceeeeeehhccH
Q 008162 295 MNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 295 lng~~i~g~~l~V~~a~~~ 313 (575)
|||..|+.++|+|.+...+
T Consensus 486 mngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 486 MNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred hcchhhccccceEEeeecc
Confidence 9999999999999987654
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1e-34 Score=318.12 Aligned_cols=268 Identities=18% Similarity=0.304 Sum_probs=209.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhc------------CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSF------------GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 106 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~------------G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i 106 (575)
..++|||+|||.++|+++|+++|+.+ +.|..+.+. .++|||||+|.+.++|..|| .|||..+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 46789999999999999999999975 234444433 36899999999999999999 5999999
Q ss_pred CCeeeEEeeecchhhhh-----------------------hhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEE
Q 008162 107 NDKQVFVGHFLRKQERE-----------------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 163 (575)
Q Consensus 107 ~g~~v~v~~~~~~~~~~-----------------------~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i 163 (575)
.|+.|.|.......... ........++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999997543221000 0001123468999999999999999999999999999999
Q ss_pred EeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHH-----------hhhHHhhhhhcccc
Q 008162 164 MRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL-----------KGQFEQAMKETVDK 231 (575)
Q Consensus 164 ~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~ 231 (575)
+.+ .+|.++|||||+|.+.++|..|++.|++..+.|+.|.|.++.......... ...... .......
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 406 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQ-SILQIGG 406 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchh-hhccccC
Confidence 988 689999999999999999999999999999999999998875332111000 000000 0001112
Q ss_pred ccceeEEEecCCCC--C--------CHHHHHHHhhhcCCeeEEEEeeCC----CCCCCceEEEEeCCHHHHHHHHHHhCC
Q 008162 232 FQGLNLYIKNLGDS--I--------DDEKLKELFSEFGTITSCKVMRDP----SGISKGSGFVAFSTPEEASRALAEMNG 297 (575)
Q Consensus 232 ~~~~~l~V~nl~~~--~--------t~~~l~~~F~~~G~v~~~~i~~~~----~g~skg~afV~f~s~~~A~~A~~~lng 297 (575)
....+|+|.|+... + ..++|+++|+.||.|++|+|+++. .+.++|++||+|.+.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 34568999999532 1 236899999999999999998752 355689999999999999999999999
Q ss_pred ceecceeeeeehhccH
Q 008162 298 KMIVSKPLYVAVAQRK 313 (575)
Q Consensus 298 ~~i~g~~l~V~~a~~~ 313 (575)
..|+|+.|.|.|....
T Consensus 487 r~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 487 RKFNDRVVVAAFYGED 502 (509)
T ss_pred CEECCeEEEEEEeCHH
Confidence 9999999999997754
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.9e-35 Score=294.82 Aligned_cols=274 Identities=31% Similarity=0.477 Sum_probs=227.8
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
.+|||++||++++.++|.++|+.+|+|..|.++++ ..+.++|||||+|+-.||+.+|++..++..+.|+.+.|.....+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999999 45679999999999999999999999999999999999877654
Q ss_pred hhhhhhh----------h----------ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEe
Q 008162 120 QERETVA----------I----------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 179 (575)
Q Consensus 120 ~~~~~~~----------~----------~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F 179 (575)
....... . ......|.|+|||+.+.+.+|+.+|+.||.|..|.|.+..+|+-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 3322100 0 0113579999999999999999999999999999999888888789999999
Q ss_pred CCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHH-------HHhhh----------------------------HH--
Q 008162 180 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ-------ELKGQ----------------------------FE-- 222 (575)
Q Consensus 180 ~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~-------~~~~~----------------------------~~-- 222 (575)
.+..+|..|++.+|+..|.||.|.|.||..+...+. .++.. .+
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999976532221 00000 00
Q ss_pred h-------------------------hhhh----------ccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEe
Q 008162 223 Q-------------------------AMKE----------TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 267 (575)
Q Consensus 223 ~-------------------------~~~~----------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~ 267 (575)
. ...+ ......+.+|||+|||+++|+++|.+.|+.||.|.++.|+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 0000 0111234689999999999999999999999999999998
Q ss_pred eCC-CCCCCceEEEEeCCHHHHHHHHHHh-----CC-ceecceeeeeehhccHH
Q 008162 268 RDP-SGISKGSGFVAFSTPEEASRALAEM-----NG-KMIVSKPLYVAVAQRKE 314 (575)
Q Consensus 268 ~~~-~g~skg~afV~f~s~~~A~~A~~~l-----ng-~~i~g~~l~V~~a~~~~ 314 (575)
.++ +|.|+|+|||.|.+..+|.+||... .| ..++|+-|.|.++-.+.
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 886 8999999999999999999999876 24 67899999999987553
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-34 Score=296.66 Aligned_cols=257 Identities=40% Similarity=0.657 Sum_probs=234.3
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchh
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~ 120 (575)
..|||+ +++|+..|+++|+.+|+|++++|+.|. + +-|||||.|.++++|++||+.+|...+.|+.++|.|..+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 358888 899999999999999999999999998 6 99999999999999999999999999999999999987644
Q ss_pred hhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCe
Q 008162 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200 (575)
Q Consensus 121 ~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~ 200 (575)
.. |||+||+++++..+|.++|+.||.|.+|++..|.+| ++|| ||+|+++++|.+|++.+||..+.++
T Consensus 77 ~~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 77 SL-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred ce-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 32 999999999999999999999999999999999999 8999 9999999999999999999999999
Q ss_pred eEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEE
Q 008162 201 EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280 (575)
Q Consensus 201 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV 280 (575)
.|+|.....+.++...... ....-+++||+|++..++++.|.++|+.||.|.++.++.+..|.++||+||
T Consensus 144 ki~vg~~~~~~er~~~~~~----------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv 213 (369)
T KOG0123|consen 144 KIYVGLFERKEEREAPLGE----------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFV 213 (369)
T ss_pred eeEEeeccchhhhcccccc----------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccce
Confidence 9999999888776644322 112235899999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCceecceeeeeehhccHHHHHHHHHHhhh
Q 008162 281 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 325 (575)
Q Consensus 281 ~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~~r~~~~~~~~~ 325 (575)
.|.++++|..|+..||+....++.+.|.-+..+.++..-+...+.
T Consensus 214 ~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~ 258 (369)
T KOG0123|consen 214 NFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFE 258 (369)
T ss_pred eecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhH
Confidence 999999999999999999999999999999997777666555443
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.3e-34 Score=304.53 Aligned_cols=170 Identities=24% Similarity=0.486 Sum_probs=151.2
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..++|||+||++++++++|+++|+.||.|.+|++..| .+|.++|||||+|.+.++|.+|++.+||..+.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4578999999999999999999999999999999998 688999999999999999999999999999999999998654
Q ss_pred chhhhhh-----hhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHH
Q 008162 118 RKQERET-----VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191 (575)
Q Consensus 118 ~~~~~~~-----~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~ 191 (575)
....... .......++|||+||+.++++++|+++|+.||.|.++.+.+| .+|+++|||||+|++.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 3211110 011234578999999999999999999999999999999998 4688999999999999999999999
Q ss_pred HCCCeeCCeeEEEcccc
Q 008162 192 LNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 192 l~~~~~~g~~l~v~~a~ 208 (575)
||+..++|+.|.|.++.
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99999999999998765
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=2.9e-31 Score=277.37 Aligned_cols=209 Identities=29% Similarity=0.477 Sum_probs=177.8
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCC
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQ 79 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~ 79 (575)
|.+.+||++||+.||+..|.|+.|+|.|..... ......+|||+|||.++++++|+++|+.||.|..+++..+ ..+.
T Consensus 52 f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~--~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~ 129 (352)
T TIGR01661 52 YVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS--DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGL 129 (352)
T ss_pred ECcHHHHHHHHhhcccEEECCeeEEEEeecccc--cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCC
Confidence 789999999999999999999999999974322 2223568999999999999999999999999999999988 4678
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEeeecchhhhhhh---------------h----------------
Q 008162 80 SKGFGFVQFENKESAQNAIDKLNGMLIND--KQVFVGHFLRKQERETV---------------A---------------- 126 (575)
Q Consensus 80 skG~afV~F~t~e~A~~Ai~~lng~~i~g--~~v~v~~~~~~~~~~~~---------------~---------------- 126 (575)
++|||||+|++.++|.+|++.|||..+.| ..+.|.+.......... .
T Consensus 130 ~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (352)
T TIGR01661 130 SKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMH 209 (352)
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCcc
Confidence 99999999999999999999999998877 45666654322100000 0
Q ss_pred ----------------------------------------h---------------ccCCceEEEeCCCcCCCHHHHHHH
Q 008162 127 ----------------------------------------I---------------KTKFNNVFVKNLDESTTDEDLKKI 151 (575)
Q Consensus 127 ----------------------------------------~---------------~~~~~~v~V~nLp~~~tee~L~~~ 151 (575)
. .....+|||+|||.++++++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~ 289 (352)
T TIGR01661 210 HAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQL 289 (352)
T ss_pred CcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHH
Confidence 0 001125999999999999999999
Q ss_pred hccCCCeeEEEEEeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccch
Q 008162 152 FGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211 (575)
Q Consensus 152 F~~~G~i~~i~i~~d~-~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 211 (575)
|++||.|.++.|++|. +|+++|||||+|.+.++|.+|++.|||..+.||.|.|.+...+.
T Consensus 290 F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 290 FGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999995 89999999999999999999999999999999999999987764
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1.7e-29 Score=258.72 Aligned_cols=168 Identities=31% Similarity=0.558 Sum_probs=152.6
Q ss_pred ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcc
Q 008162 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206 (575)
Q Consensus 128 ~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~ 206 (575)
....++|||+|||+++++++|+++|+.||.|.+|+|+.| .+++++|||||+|.++++|++|++.|++..+.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345689999999999999999999999999999999998 6899999999999999999999999999999999999988
Q ss_pred cccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCH
Q 008162 207 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 285 (575)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~ 285 (575)
+..... ....++|||+|||..+|+++|+++|++||.|++++|+.+. +|++||||||+|.+.
T Consensus 184 a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 754211 1124589999999999999999999999999999999886 899999999999999
Q ss_pred HHHHHHHHHhCCceecc--eeeeeehhccH
Q 008162 286 EEASRALAEMNGKMIVS--KPLYVAVAQRK 313 (575)
Q Consensus 286 ~~A~~A~~~lng~~i~g--~~l~V~~a~~~ 313 (575)
++|.+||+.||+..+.+ ++|.|.++...
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 99999999999999875 68999998865
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3.3e-29 Score=256.63 Aligned_cols=168 Identities=30% Similarity=0.526 Sum_probs=151.5
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.| .++.++|||||+|.+.++|++||+.||+..+.++.|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4456779999999999999999999999999999999999 689999999999999999999999999999999999998
Q ss_pred eecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHC
Q 008162 115 HFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALN 193 (575)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~ 193 (575)
+...... ....++|||+|||+++++++|+++|++||.|..+.|++| .+|+++|||||+|++.++|++||+.||
T Consensus 183 ~a~p~~~------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 183 YARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ccccccc------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 8654322 223568999999999999999999999999999999988 589999999999999999999999999
Q ss_pred CCeeCC--eeEEEccccc
Q 008162 194 GKKFDD--REWYVGKAQK 209 (575)
Q Consensus 194 ~~~~~g--~~l~v~~a~~ 209 (575)
+..+.+ +.|.|.++..
T Consensus 257 g~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 257 NVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred CCccCCCceeEEEEECCc
Confidence 998876 5777877654
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.4e-29 Score=252.85 Aligned_cols=295 Identities=26% Similarity=0.400 Sum_probs=225.0
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCC------------------------CCCCCeEEEcCCCCCcCHHH
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIR------------------------KSGTGNIFIKNLDKSIDHKA 56 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r------------------------~~~~~~lfV~nLp~~ite~~ 56 (575)
|.-.||+++|+...+.+.+.|+-|+|-.....+... .-....|.|+|||+.|...+
T Consensus 54 Fam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~d 133 (678)
T KOG0127|consen 54 FAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPD 133 (678)
T ss_pred eehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHH
Confidence 667899999999999999999999985422111111 01145699999999999999
Q ss_pred HHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhh------------
Q 008162 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET------------ 124 (575)
Q Consensus 57 L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~------------ 124 (575)
|+.+|+.||.|.+|.|.+...|.-.|||||+|....+|..|++.+|+..|.|+.|-|.|+..+..-..
T Consensus 134 Lk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~ 213 (678)
T KOG0127|consen 134 LKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKA 213 (678)
T ss_pred HHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhc
Confidence 99999999999999999887787779999999999999999999999999999999998763211000
Q ss_pred -------h------------------------h--------------------hc-----------------cC----Cc
Q 008162 125 -------V------------------------A--------------------IK-----------------TK----FN 132 (575)
Q Consensus 125 -------~------------------------~--------------------~~-----------------~~----~~ 132 (575)
. . .. .. ..
T Consensus 214 ~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~ 293 (678)
T KOG0127|consen 214 VKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGK 293 (678)
T ss_pred cchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccc
Confidence 0 0 00 00 03
Q ss_pred eEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHH-----CC-CeeCCeeEEEc
Q 008162 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL-----NG-KKFDDREWYVG 205 (575)
Q Consensus 133 ~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l-----~~-~~~~g~~l~v~ 205 (575)
+|||+|||+++++++|.+.|++||+|..+.++.+ .+|+++|+|||.|.+..+|.+||... .+ ..+.||.|.|.
T Consensus 294 tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~ 373 (678)
T KOG0127|consen 294 TVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVT 373 (678)
T ss_pred eEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeee
Confidence 5999999999999999999999999999999888 68999999999999999999999865 23 66899999998
Q ss_pred ccccchhHHHH---------------------------------------HhhhHHhhh----hhccccccceeEEEecC
Q 008162 206 KAQKKSEREQE---------------------------------------LKGQFEQAM----KETVDKFQGLNLYIKNL 242 (575)
Q Consensus 206 ~a~~~~~~~~~---------------------------------------~~~~~~~~~----~~~~~~~~~~~l~V~nl 242 (575)
.+....+.... .+..+.... +...-....+.|.|.||
T Consensus 374 ~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nl 453 (678)
T KOG0127|consen 374 LAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNL 453 (678)
T ss_pred eccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcC
Confidence 88654332211 001111111 11111234567889999
Q ss_pred CCCCCHHHHHHHhhh----cC-CeeE-EEEeeC----CCCCCCceEEEEeCCHHHHHHHHHHh
Q 008162 243 GDSIDDEKLKELFSE----FG-TITS-CKVMRD----PSGISKGSGFVAFSTPEEASRALAEM 295 (575)
Q Consensus 243 ~~~~t~~~l~~~F~~----~G-~v~~-~~i~~~----~~g~skg~afV~f~s~~~A~~A~~~l 295 (575)
|..+++..|..+... |- .+.. |+.+.. ..+.|.||+|+.|..++.|.+|+..+
T Consensus 454 pramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 454 PRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred ccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 999999999887732 32 2222 344433 25789999999999999999999865
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.7e-29 Score=269.71 Aligned_cols=246 Identities=21% Similarity=0.289 Sum_probs=194.0
Q ss_pred CCCHHHHHHHHHHhCCCccC-CeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCC-eeEEEEeeC--C
Q 008162 1 MFMLSSAARALDVLNFTPLN-NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN-ILSCKIATD--G 76 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~-g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~-I~~i~v~~~--~ 76 (575)
|.+.|||++||+.||...|. |+.+.|.|+. ..++|||+|||.++|+++|++.|+.++. +.++.+... .
T Consensus 106 F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~--------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~ 177 (578)
T TIGR01648 106 FCGKEEAKEAVKLLNNYEIRPGRLLGVCISV--------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAAD 177 (578)
T ss_pred eCCHHHHHHHHHHcCCCeecCCccccccccc--------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccc
Confidence 78999999999999977775 8888888764 2468999999999999999999999974 555544433 4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhcc
Q 008162 77 SGQSKGFGFVQFENKESAQNAIDKLNG--MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE 154 (575)
Q Consensus 77 ~g~skG~afV~F~t~e~A~~Ai~~lng--~~i~g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~ 154 (575)
.++++|||||+|++.++|..|+++|+. ..+.|+.|.|.+.....+.... .....++|||+||+.++++++|+++|+.
T Consensus 178 kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-~~~~~k~LfVgNL~~~~tee~L~~~F~~ 256 (578)
T TIGR01648 178 KKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-VMAKVKILYVRNLMTTTTEEIIEKSFSE 256 (578)
T ss_pred cCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc-ccccccEEEEeCCCCCCCHHHHHHHHHh
Confidence 567899999999999999999998864 4678999999988765443221 1234578999999999999999999999
Q ss_pred C--CCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHH-hh---------hHH
Q 008162 155 Y--GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL-KG---------QFE 222 (575)
Q Consensus 155 ~--G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~-~~---------~~~ 222 (575)
| |.|+.|.+++ +||||+|++.++|.+|++.||+..|.|+.|.|.++.......... .+ ...
T Consensus 257 f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~ 329 (578)
T TIGR01648 257 FKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAA 329 (578)
T ss_pred cCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCccccccc
Confidence 9 9999998764 499999999999999999999999999999999997653321100 00 000
Q ss_pred hhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCee
Q 008162 223 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 262 (575)
Q Consensus 223 ~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~ 262 (575)
.............+++++|+++..+++-+.++|..+|.|.
T Consensus 330 ~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 330 RQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred ccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 0000111123467899999999999999999999998744
No 22
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.96 E-value=1.6e-29 Score=187.89 Aligned_cols=64 Identities=61% Similarity=0.944 Sum_probs=61.9
Q ss_pred ChHHHHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 008162 489 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 552 (575)
Q Consensus 489 ~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 552 (575)
+|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999999999999999999999999999999864
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=243.27 Aligned_cols=171 Identities=30% Similarity=0.579 Sum_probs=149.8
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCe-eCC--eeEEEc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK-FDD--REWYVG 205 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~-~~g--~~l~v~ 205 (575)
+.-.+||+.+|+.|+|+||+++|++||.|.+|.|++| .++.++|||||.|.+.++|.+|+.+||+.+ +.| ..|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3456999999999999999999999999999999999 579999999999999999999999998755 444 466777
Q ss_pred ccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCH
Q 008162 206 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 285 (575)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~ 285 (575)
++....++- ....+|||+-|+..+||.+++++|++||.|++|.|++|+.+.|||||||+|.+.
T Consensus 113 ~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 776544332 112379999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcee-c--ceeeeeehhccHHHHH
Q 008162 286 EEASRALAEMNGKMI-V--SKPLYVAVAQRKEERR 317 (575)
Q Consensus 286 ~~A~~A~~~lng~~i-~--g~~l~V~~a~~~~~r~ 317 (575)
+-|..|+++|||... . ..+|.|+||+.+++|.
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 999999999999864 3 5799999998876655
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=6.5e-28 Score=259.19 Aligned_cols=177 Identities=24% Similarity=0.432 Sum_probs=152.5
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
...++|||+||++++++++|+++|+.||.|.+|.++.| .+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35578999999999999999999999999999999988 68999999999999999999999999999999999999865
Q ss_pred ccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHH
Q 008162 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 286 (575)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~ 286 (575)
........... . ........++|||+||+.++++++|+++|+.||.|.+++|.++. +|.+||||||.|.+.+
T Consensus 185 ~~~p~a~~~~~-----~--~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 185 SNMPQAQPIID-----M--VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ccccccccccc-----c--ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 43211110000 0 00111234689999999999999999999999999999999986 6789999999999999
Q ss_pred HHHHHHHHhCCceecceeeeeehhcc
Q 008162 287 EASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 287 ~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
+|.+|++.||+..++|+.|+|.++..
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 99999999999999999999997764
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.4e-27 Score=223.13 Aligned_cols=181 Identities=25% Similarity=0.498 Sum_probs=159.2
Q ss_pred eEEEEeCCCCCCCCCC----CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHH
Q 008162 23 SIRIMYSHRDPSIRKS----GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNA 97 (575)
Q Consensus 23 ~iri~~s~~~~~~r~~----~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~A 97 (575)
+++|+|.... ..++. ..-.|||+.|...|+.++|++.|.+||+|.+++|++| .+++|||||||.|-+.++|+.|
T Consensus 42 e~~v~wa~~p-~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 42 ELKVNWATAP-GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred hhccccccCc-ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHH
Confidence 6678885433 11111 1335999999999999999999999999999999999 7899999999999999999999
Q ss_pred HHHhcCCccCCeeeEEeeecchhhhhhhh----------hccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCC
Q 008162 98 IDKLNGMLINDKQVFVGHFLRKQERETVA----------IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 167 (575)
Q Consensus 98 i~~lng~~i~g~~v~v~~~~~~~~~~~~~----------~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~ 167 (575)
|..|||.-|.+|.|+-.++.++..+.... .+.++++||++|++.-++|++|++.|+.||.|.+|+|.+|
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~- 199 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD- 199 (321)
T ss_pred HHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-
Confidence 99999999999999999998876433221 1356789999999999999999999999999999999988
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 168 ~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
+||+||.|++.|+|.+||-.+|+.++.|..+++.|...
T Consensus 200 ----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 200 ----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred ----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 89999999999999999999999999999999988754
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=229.47 Aligned_cols=197 Identities=26% Similarity=0.406 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHhCCCccC-CeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCC-eeEEEEeeC--C
Q 008162 1 MFMLSSAARALDVLNFTPLN-NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN-ILSCKIATD--G 76 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~-g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~-I~~i~v~~~--~ 76 (575)
|.|.++|++|+++||..+|+ ||.|+|.-|. ..++|||+|||++.++++|.+.|++.+. |+.|.|..+ .
T Consensus 132 f~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv--------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d 203 (506)
T KOG0117|consen 132 FCTKEEAQEAIKELNNYEIRPGKLLGVCVSV--------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD 203 (506)
T ss_pred eecHHHHHHHHHHhhCccccCCCEeEEEEee--------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc
Confidence 67899999999999966665 9999998774 3578999999999999999999999984 777877776 4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhcc
Q 008162 77 SGQSKGFGFVQFENKESAQNAIDKLNG--MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE 154 (575)
Q Consensus 77 ~g~skG~afV~F~t~e~A~~Ai~~lng--~~i~g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~ 154 (575)
..+++|||||+|++...|..|..+|-. ..++|..+.|.|+....+.... .-..-..|||+||+.++|+|.|+++|+.
T Consensus 204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~ 282 (506)
T KOG0117|consen 204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNE 282 (506)
T ss_pred cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHh
Confidence 567999999999999999999998844 5689999999999887776554 2334467999999999999999999999
Q ss_pred CCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhH
Q 008162 155 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 213 (575)
Q Consensus 155 ~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~ 213 (575)
||.|+.|+.++| ||||.|.+.++|.+|++.+|++.++|..|.|..|++..+.
T Consensus 283 ~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 283 FGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred ccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 999999999987 9999999999999999999999999999999999876543
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=243.08 Aligned_cols=264 Identities=25% Similarity=0.391 Sum_probs=212.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
+...-|+|+|||..+..++|.++|..||.|..+.+. +.|. -++|+|..+.+|..|++.|....+....+++.+..
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 344569999999999999999999999999988443 3332 49999999999999999999988776666665443
Q ss_pred chhhh-------------hh----------h---------h-----------h-ccCCceEEEeCCCcCCCHHHHHHHhc
Q 008162 118 RKQER-------------ET----------V---------A-----------I-KTKFNNVFVKNLDESTTDEDLKKIFG 153 (575)
Q Consensus 118 ~~~~~-------------~~----------~---------~-----------~-~~~~~~v~V~nLp~~~tee~L~~~F~ 153 (575)
..... .. . . . ....+.|||.||.++.+.++|..+|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 21110 00 0 0 0 01113499999999999999999999
Q ss_pred cCCCeeEEEEEeCCCC----CcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhcc
Q 008162 154 EYGTITSAVVMRDGDG----KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 229 (575)
Q Consensus 154 ~~G~i~~i~i~~d~~g----~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (575)
..|.|.++.|...+++ .|.|||||+|.+.++|.+|++.|+|..+.|..|++..+..+...... +...
T Consensus 538 k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g---------K~~~ 608 (725)
T KOG0110|consen 538 KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG---------KKKS 608 (725)
T ss_pred hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc---------cccc
Confidence 9999999988866544 36699999999999999999999999999999999888722111111 1222
Q ss_pred ccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 230 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
....+++|+|+|||+..+..+++++|..||.|.+|+|... ..+.++|||||.|-++.+|.+|++.|.+..+.|++|++.
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 2233789999999999999999999999999999999877 456679999999999999999999999999999999999
Q ss_pred hhccHHH
Q 008162 309 VAQRKEE 315 (575)
Q Consensus 309 ~a~~~~~ 315 (575)
|+.....
T Consensus 689 wA~~d~~ 695 (725)
T KOG0110|consen 689 WAKSDNT 695 (725)
T ss_pred hhccchH
Confidence 9987543
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.9e-26 Score=220.84 Aligned_cols=272 Identities=22% Similarity=0.453 Sum_probs=215.8
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
.++|||+.|.+.+.|+.|+..|..||+|.+|.+.-| -+++.||||||+|+-+|.|..|++.|||.++.||.|.|+....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 467999999999999999999999999999999888 5899999999999999999999999999999999999986543
Q ss_pred hhhhhhh-----hhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCC-CCcceeEEEEeCCHHHHHHHHHHH
Q 008162 119 KQERETV-----AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 192 (575)
Q Consensus 119 ~~~~~~~-----~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~-g~skg~afV~F~~~e~A~~Ai~~l 192 (575)
-...... .....+.+|||..+..+.+++||+..|+.||+|..|.+-++.+ +..|||||++|.+..+...||..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 2211111 1235788999999999999999999999999999999999965 568999999999999999999999
Q ss_pred CCCeeCCeeEEEcccccchhHH----------------------------------------------------------
Q 008162 193 NGKKFDDREWYVGKAQKKSERE---------------------------------------------------------- 214 (575)
Q Consensus 193 ~~~~~~g~~l~v~~a~~~~~~~---------------------------------------------------------- 214 (575)
|-..++|..|+|..+......-
T Consensus 273 NlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l 352 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTL 352 (544)
T ss_pred chhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCc
Confidence 9999999999988764320000
Q ss_pred ------------------------------------------------------HHHhhhHH--hh--------------
Q 008162 215 ------------------------------------------------------QELKGQFE--QA-------------- 224 (575)
Q Consensus 215 ------------------------------------------------------~~~~~~~~--~~-------------- 224 (575)
.++....+ ..
T Consensus 353 ~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sA 432 (544)
T KOG0124|consen 353 PQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSA 432 (544)
T ss_pred cccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccH
Confidence 00000000 00
Q ss_pred ----hhhccccccceeEEEecC--CCCCC---HHHHHHHhhhcCCeeEEEEeeCCCCC-----CCceEEEEeCCHHHHHH
Q 008162 225 ----MKETVDKFQGLNLYIKNL--GDSID---DEKLKELFSEFGTITSCKVMRDPSGI-----SKGSGFVAFSTPEEASR 290 (575)
Q Consensus 225 ----~~~~~~~~~~~~l~V~nl--~~~~t---~~~l~~~F~~~G~v~~~~i~~~~~g~-----skg~afV~f~s~~~A~~ 290 (575)
...-.....++.|.++|. |.+++ +.+|++.|.+||.|.+|.|...+.+. -----||+|+...++.+
T Consensus 433 RhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~r 512 (544)
T KOG0124|consen 433 RHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHR 512 (544)
T ss_pred HHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHH
Confidence 000011223556788887 55554 46899999999999999988764332 12236999999999999
Q ss_pred HHHHhCCceecceeeeeehhc
Q 008162 291 ALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 291 A~~~lng~~i~g~~l~V~~a~ 311 (575)
|+..|+|+.++|+++...+..
T Consensus 513 ak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 513 AKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHhhccceecCceeehhhhh
Confidence 999999999999999877654
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.4e-26 Score=210.93 Aligned_cols=207 Identities=32% Similarity=0.514 Sum_probs=172.5
Q ss_pred CCHHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCc
Q 008162 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQS 80 (575)
Q Consensus 2 ~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~s 80 (575)
-+++|||+|+.++|...+..|.|+|.|.- |+...-...+|||.+||++.|.++|.++|+.||.|...+|..| .+|.+
T Consensus 91 v~p~DAe~AintlNGLrLQ~KTIKVSyAR--PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~s 168 (360)
T KOG0145|consen 91 VRPKDAEKAINTLNGLRLQNKTIKVSYAR--PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLS 168 (360)
T ss_pred cChHHHHHHHhhhcceeeccceEEEEecc--CChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccccee
Confidence 46899999999999999999999998742 3333334578999999999999999999999999988888888 68999
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCccCCe--eeEEeeecchhhhhhhh--------------------------------
Q 008162 81 KGFGFVQFENKESAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVA-------------------------------- 126 (575)
Q Consensus 81 kG~afV~F~t~e~A~~Ai~~lng~~i~g~--~v~v~~~~~~~~~~~~~-------------------------------- 126 (575)
+|.|||.|...++|++||+.|||..-.|. .|.|.++..........
T Consensus 169 rGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~ 248 (360)
T KOG0145|consen 169 RGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNP 248 (360)
T ss_pred cceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccch
Confidence 99999999999999999999999876553 45555443211000000
Q ss_pred --h-----------------------ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeC
Q 008162 127 --I-----------------------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFE 180 (575)
Q Consensus 127 --~-----------------------~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~ 180 (575)
. .....+|||.||..+.+|.-|..+|++||.|.+++|++| .+.++||||||.+.
T Consensus 249 ~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMt 328 (360)
T KOG0145|consen 249 HAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 328 (360)
T ss_pred hhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEec
Confidence 0 001135999999999999999999999999999999999 56999999999999
Q ss_pred CHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 181 NADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 181 ~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
+.++|..|+..|||..+.+|.|.|.+...+
T Consensus 329 NYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 329 NYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred chHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999886554
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.2e-25 Score=246.57 Aligned_cols=208 Identities=23% Similarity=0.338 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCCCC---------------------------CCCCCCCCeEEEcCCCCCcC
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDP---------------------------SIRKSGTGNIFIKNLDKSID 53 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~---------------------------~~r~~~~~~lfV~nLp~~it 53 (575)
|.+.|+|+.||. ||...+.|++|+|.+..... ........+|||+|||.++|
T Consensus 230 F~~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~ 308 (509)
T TIGR01642 230 FRTVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLG 308 (509)
T ss_pred eCCHHHHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 789999999995 99999999999997532211 00112346899999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhh-----h---
Q 008162 54 HKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE-----T--- 124 (575)
Q Consensus 54 e~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~-----~--- 124 (575)
+++|+++|+.||.|..|.++.+ .+|.++|||||+|.+.++|..|++.|||..|.|+.|.|.+........ .
T Consensus 309 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~ 388 (509)
T TIGR01642 309 EDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMA 388 (509)
T ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccc
Confidence 9999999999999999999998 578999999999999999999999999999999999998764221100 0
Q ss_pred -------h-------hhccCCceEEEeCCCcCC----------CHHHHHHHhccCCCeeEEEEEeCC----CCCcceeEE
Q 008162 125 -------V-------AIKTKFNNVFVKNLDEST----------TDEDLKKIFGEYGTITSAVVMRDG----DGKSKCFGF 176 (575)
Q Consensus 125 -------~-------~~~~~~~~v~V~nLp~~~----------tee~L~~~F~~~G~i~~i~i~~d~----~g~skg~af 176 (575)
. ........|+|.|+.... ..++|+++|++||.|.+|.|.++. ++...|++|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~f 468 (509)
T TIGR01642 389 PVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVF 468 (509)
T ss_pred ccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEE
Confidence 0 001234568899986321 236799999999999999998752 356689999
Q ss_pred EEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 177 VNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 177 V~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
|+|++.++|.+|+..|||..|.|+.|.+.+...
T Consensus 469 V~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 469 LEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999999999999988654
No 31
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.93 E-value=5.1e-27 Score=181.72 Aligned_cols=71 Identities=61% Similarity=0.915 Sum_probs=69.3
Q ss_pred ccchhhhhcCChHHHHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHH
Q 008162 479 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 549 (575)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l 549 (575)
+.+++.|+++++++||++|||+|||+|+.++|++|+||||||||||++||++||+|+++|+.||+||++||
T Consensus 2 ~~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 2 PLTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp STSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cchHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999997
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2.9e-25 Score=240.15 Aligned_cols=177 Identities=31% Similarity=0.503 Sum_probs=152.1
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
...++|||+|||.++++++|+++|+.||.|.+|.++.| .+|+++|||||+|.+.++|.+|+. |++..+.|+.|.|...
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999998 579999999999999999999995 8999999999999876
Q ss_pred ccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHH
Q 008162 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 286 (575)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~ 286 (575)
............ .........++|||+||+..+|+++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.+
T Consensus 166 ~~~~~~~~~~~~------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 166 QAEKNRAAKAAT------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred chhhhhhhhccc------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 543322211000 000111225789999999999999999999999999999999886 5699999999999999
Q ss_pred HHHHHHHHhCCceecceeeeeehhcc
Q 008162 287 EASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 287 ~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
+|.+|+..|||..|.|+.|.|.++..
T Consensus 240 ~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 240 EAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999999999999999999999874
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=2.5e-25 Score=227.39 Aligned_cols=270 Identities=24% Similarity=0.379 Sum_probs=212.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
...++||+--|...++..||+++|+.+|.|..|.++.| ..+.++|.|||+|.+.++.-.|| .|.|..+.|..|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 45677999999999999999999999999999999999 57889999999999999999999 78999999999999887
Q ss_pred cchhhhhhhhh--------ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHH
Q 008162 117 LRKQERETVAI--------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAK 187 (575)
Q Consensus 117 ~~~~~~~~~~~--------~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~ 187 (575)
.....+..... ......|||+||..++++++|+.+|+.||.|..|.+..| .+|+++|||||+|.+.++|.+
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARK 335 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHH
Confidence 65444422111 112234999999999999999999999999999999998 599999999999999999999
Q ss_pred HHHHHCCCeeCCeeEEEcccccchhHH------------------------HHHhhhHHhhh------------------
Q 008162 188 AVEALNGKKFDDREWYVGKAQKKSERE------------------------QELKGQFEQAM------------------ 225 (575)
Q Consensus 188 Ai~~l~~~~~~g~~l~v~~a~~~~~~~------------------------~~~~~~~~~~~------------------ 225 (575)
|+..|||..+.|+.|.|.......... ..+.....+..
T Consensus 336 a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~ 415 (549)
T KOG0147|consen 336 ALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKL 415 (549)
T ss_pred HHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhcccc
Confidence 999999999999999886543321111 00000000000
Q ss_pred ------------hhcccc-------ccceeEEEecCCC--CCC--------HHHHHHHhhhcCCeeEEEEeeCCCCCCCc
Q 008162 226 ------------KETVDK-------FQGLNLYIKNLGD--SID--------DEKLKELFSEFGTITSCKVMRDPSGISKG 276 (575)
Q Consensus 226 ------------~~~~~~-------~~~~~l~V~nl~~--~~t--------~~~l~~~F~~~G~v~~~~i~~~~~g~skg 276 (575)
...... ...-|+.++|+=+ ..| .+++.+.+++||.|..|.|-.+ |-|
T Consensus 416 ~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g 491 (549)
T KOG0147|consen 416 ASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAG 491 (549)
T ss_pred chHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCc
Confidence 000011 3344566777622 112 3688889999999999988655 459
Q ss_pred eEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 277 ~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
|.||.|.+.++|..|+.+|||..+.|+.|.+++-..
T Consensus 492 ~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 492 CVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred eEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 999999999999999999999999999999998653
No 34
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.91 E-value=5.3e-23 Score=203.51 Aligned_cols=160 Identities=28% Similarity=0.463 Sum_probs=133.8
Q ss_pred CeEEEcCCCCCcCHHHHHHHHh-hcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 41 GNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~-~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
+.+||.|||+++.+.||+++|+ +.|.|.-|.+..|+.|+++|+|.|+|+++|.+++|+++||.+.++|+.+.|......
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 3499999999999999999996 667999999999999999999999999999999999999999999999988643210
Q ss_pred hh-----------------------------------------------hhhh---hh--c-------------------
Q 008162 120 QE-----------------------------------------------RETV---AI--K------------------- 128 (575)
Q Consensus 120 ~~-----------------------------------------------~~~~---~~--~------------------- 128 (575)
.. +... .. +
T Consensus 125 q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Fl 204 (608)
T KOG4212|consen 125 QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFL 204 (608)
T ss_pred hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhh
Confidence 00 0000 00 0
Q ss_pred --------cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCe
Q 008162 129 --------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200 (575)
Q Consensus 129 --------~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~ 200 (575)
.-...+||.||.+.+..+.|++.|.-.|.|+++.+-.|+.|.++|++.++|..+-.|-.||..+++.-+.++
T Consensus 205 r~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~ 284 (608)
T KOG4212|consen 205 RSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDR 284 (608)
T ss_pred hhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccc
Confidence 000348999999999999999999999999999999999999999999999999999999988875444333
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=9.5e-24 Score=186.97 Aligned_cols=170 Identities=32% Similarity=0.552 Sum_probs=151.7
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
...+|||+||+..++++-|.++|-+.|.|.++.+.+| -+...+|||||+|.++|+|+-|++-||..++-|+.|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4468999999999999999999999999999999999 467789999999999999999999999999999999998886
Q ss_pred cchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEE-EEeeCC-CCCCCceEEEEeCCHH
Q 008162 209 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPE 286 (575)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~-~i~~~~-~g~skg~afV~f~s~~ 286 (575)
.... ....+.+|||+||++.+++..|.+.|+.||.+.+. +|++++ +|.++||+||.|++.+
T Consensus 88 ~~~~-----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 88 AHQK-----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred cccc-----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 2211 11234689999999999999999999999998774 889887 5889999999999999
Q ss_pred HHHHHHHHhCCceecceeeeeehhccHHHH
Q 008162 287 EASRALAEMNGKMIVSKPLYVAVAQRKEER 316 (575)
Q Consensus 287 ~A~~A~~~lng~~i~g~~l~V~~a~~~~~r 316 (575)
.+.+|+.++||+.++.+++.|.++.++..+
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 999999999999999999999999876433
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=6.5e-23 Score=181.69 Aligned_cols=173 Identities=28% Similarity=0.483 Sum_probs=152.3
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
..+....+|||+||+..++++-|+++|-+.|+|+++.+.+| .+...+|||||+|.++|+|+-|++-||...+-|+.|+|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 34556789999999999999999999999999999999999 56779999999999999999999999999999999999
Q ss_pred eeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeE-EEEEeC-CCCCcceeEEEEeCCHHHHHHHHHH
Q 008162 114 GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 191 (575)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~-i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~ 191 (575)
......... .....++||+||.+++++.-|.+.|+.||.+.+ -.+++| .+|.++|||||.|.+.+.+.+|+..
T Consensus 84 ~kas~~~~n-----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 84 NKASAHQKN-----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred Eeccccccc-----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 887722211 123378999999999999999999999998765 356777 5699999999999999999999999
Q ss_pred HCCCeeCCeeEEEcccccchh
Q 008162 192 LNGKKFDDREWYVGKAQKKSE 212 (575)
Q Consensus 192 l~~~~~~g~~l~v~~a~~~~~ 212 (575)
+++..+.++.+.|..+.++..
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred hccchhcCCceEEEEEEecCC
Confidence 999999999999999876643
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=4.5e-23 Score=192.27 Aligned_cols=186 Identities=31% Similarity=0.485 Sum_probs=157.4
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCee-C--CeeEEEcc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-D--DREWYVGK 206 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~-~--g~~l~v~~ 206 (575)
+.+.|||+-|.+.-+|||++.+|..||.|+++.+.+..+|.+|||+||.|.+..+|..||..|||... . ...|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999998664 2 35678888
Q ss_pred cccchhHHHHHh--------------------------------------------------------------------
Q 008162 207 AQKKSEREQELK-------------------------------------------------------------------- 218 (575)
Q Consensus 207 a~~~~~~~~~~~-------------------------------------------------------------------- 218 (575)
+....++....-
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 876655430000
Q ss_pred -------------------------------------------------------------------------hhHH---
Q 008162 219 -------------------------------------------------------------------------GQFE--- 222 (575)
Q Consensus 219 -------------------------------------------------------------------------~~~~--- 222 (575)
.++.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0000
Q ss_pred ----------------hhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCH
Q 008162 223 ----------------QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 285 (575)
Q Consensus 223 ----------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~ 285 (575)
.......+...+|+|||-.||-++.|.||...|-.||.|.+.+|+.|+ +++||+|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000012234568999999999999999999999999999999999997 889999999999999
Q ss_pred HHHHHHHHHhCCceecceeeeeehhccHHH
Q 008162 286 EEASRALAEMNGKMIVSKPLYVAVAQRKEE 315 (575)
Q Consensus 286 ~~A~~A~~~lng~~i~g~~l~V~~a~~~~~ 315 (575)
.+|+.||..|||..|+=|+|+|.+.++|+.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999888754
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=6.3e-23 Score=193.92 Aligned_cols=147 Identities=27% Similarity=0.589 Sum_probs=137.7
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhh
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~ 121 (575)
.|||+|||..+++.+|+.+|++||+|++|.|+++ |||||.++...|+.||..|+|+.|.|..|.|..++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs- 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS- 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC-
Confidence 5999999999999999999999999999999975 99999999999999999999999999999998877652
Q ss_pred hhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCee
Q 008162 122 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 201 (575)
Q Consensus 122 ~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~ 201 (575)
...++++|+||...++.+||++.|++||.|.++.|.+| |+||.|+..++|..|++.|++.++.|++
T Consensus 76 -------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 76 -------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred -------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccce
Confidence 34578999999999999999999999999999999976 9999999999999999999999999999
Q ss_pred EEEcccccc
Q 008162 202 WYVGKAQKK 210 (575)
Q Consensus 202 l~v~~a~~~ 210 (575)
+.|....+.
T Consensus 142 m~vq~stsr 150 (346)
T KOG0109|consen 142 MHVQLSTSR 150 (346)
T ss_pred eeeeeeccc
Confidence 999887654
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=5.4e-22 Score=187.61 Aligned_cols=147 Identities=23% Similarity=0.540 Sum_probs=137.4
Q ss_pred eEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchh
Q 008162 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212 (575)
Q Consensus 133 ~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~ 212 (575)
.|||+|||.++++.+|+.+|++||+|.+|.|+++ ||||..++...++.||+.||+.++.|..|.|+.++.++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 5899999999999999999999999999999966 999999999999999999999999999999988766522
Q ss_pred HHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHH
Q 008162 213 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292 (575)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~ 292 (575)
..++|+|+||.+.++.++|+..|++||.|.+|+|.+| |+||.|.-.++|..|+
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAI 129 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHH
Confidence 3468999999999999999999999999999999876 9999999999999999
Q ss_pred HHhCCceecceeeeeehhccH
Q 008162 293 AEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 293 ~~lng~~i~g~~l~V~~a~~~ 313 (575)
..|+|.++.|++++|.+..++
T Consensus 130 r~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 130 RGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hcccccccccceeeeeeeccc
Confidence 999999999999999998654
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=203.88 Aligned_cols=215 Identities=26% Similarity=0.429 Sum_probs=178.2
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCCCC----------------------CCCC---------------------
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDP----------------------SIRK--------------------- 37 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~----------------------~~r~--------------------- 37 (575)
|-++.||..|+..|+|+.++.-++++.|...|- .-|.
T Consensus 428 fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~ 507 (725)
T KOG0110|consen 428 FLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLAR 507 (725)
T ss_pred ecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchh
Confidence 678999999999999999999999887742220 0000
Q ss_pred -----CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCC----CcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 38 -----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG----QSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 38 -----~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g----~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
.....|||+||+++.|.++|.+.|...|.|++|.|.+..++ .|.|||||+|.+.++|..|++.|+|+.|+|
T Consensus 508 ~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 508 VAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 01122999999999999999999999999999988876544 356999999999999999999999999999
Q ss_pred eeeEEeeecchhhhhh-h--hhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHH
Q 008162 109 KQVFVGHFLRKQERET-V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADD 184 (575)
Q Consensus 109 ~~v~v~~~~~~~~~~~-~--~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~ 184 (575)
+.|.|..+..+..... . ......+.|+|+|||...+..+++.+|..||.+.++.|... ..+.++|||||.|-++.+
T Consensus 588 H~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 588 HKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred ceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 9999988872211111 1 11223478999999999999999999999999999999877 567789999999999999
Q ss_pred HHHHHHHHCCCeeCCeeEEEcccccchhHHH
Q 008162 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQ 215 (575)
Q Consensus 185 A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~ 215 (575)
|.+|+++|....+-||+|.+.|+.....-+.
T Consensus 668 a~nA~~al~STHlyGRrLVLEwA~~d~~~e~ 698 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYGRRLVLEWAKSDNTMEA 698 (725)
T ss_pred HHHHHHhhcccceechhhheehhccchHHHH
Confidence 9999999999999999999999987765443
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.85 E-value=5e-20 Score=186.39 Aligned_cols=261 Identities=19% Similarity=0.251 Sum_probs=195.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
.-.|.+++||+++|++||.++|+.+ .|.++++.+ .+|+..|-|||+|++.|++++|+++ +-+.+..+.|.|-.....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 3458899999999999999999999 888866655 4799999999999999999999976 666777788887655332
Q ss_pred hhh-h----hhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeE-EEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHC
Q 008162 120 QER-E----TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193 (575)
Q Consensus 120 ~~~-~----~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~-i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~ 193 (575)
... . ..........|.+++||+.||++||.++|+..-.|.. |.+..|..+++.|.|||+|++.+.|++|+.. |
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-h 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-H 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-H
Confidence 211 0 0011235567999999999999999999998877766 5566778899999999999999999999965 7
Q ss_pred CCeeCCeeEEEcccccchhHHHHH------------------hh------------------------------------
Q 008162 194 GKKFDDREWYVGKAQKKSEREQEL------------------KG------------------------------------ 219 (575)
Q Consensus 194 ~~~~~g~~l~v~~a~~~~~~~~~~------------------~~------------------------------------ 219 (575)
.+.|..|-|.|.++.....+.... +.
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~ 245 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDY 245 (510)
T ss_pred HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccc
Confidence 788888888887765433222110 00
Q ss_pred ----hH--Hhhhhhcc---------------ccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceE
Q 008162 220 ----QF--EQAMKETV---------------DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 278 (575)
Q Consensus 220 ----~~--~~~~~~~~---------------~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~a 278 (575)
.+ ........ ....+..++.++||+..++.+|.++|+.. ....|+|-..++|+..|-|
T Consensus 246 ~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~dGr~TGEA 324 (510)
T KOG4211|consen 246 GNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGPDGRATGEA 324 (510)
T ss_pred ccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCCCCccCCcc
Confidence 00 00000000 00112568899999999999999999976 4448888888899999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecceeee
Q 008162 279 FVAFSTPEEASRALAEMNGKMIVSKPLY 306 (575)
Q Consensus 279 fV~f~s~~~A~~A~~~lng~~i~g~~l~ 306 (575)
+|+|.|.++|..|+. -++..+..+-+.
T Consensus 325 dveF~t~edav~Ams-kd~anm~hrYVE 351 (510)
T KOG4211|consen 325 DVEFATGEDAVGAMG-KDGANMGHRYVE 351 (510)
T ss_pred eeecccchhhHhhhc-cCCcccCcceee
Confidence 999999999999995 444444444433
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=9.4e-21 Score=183.72 Aligned_cols=172 Identities=27% Similarity=0.478 Sum_probs=150.1
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
-++|||+.+.+++.|+.|+..|..||.|.+|.+.+| -+++.|||+||+|+-+|.|..|++.||+..++||.|.|.+.+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 478999999999999999999999999999999999 6899999999999999999999999999999999999998765
Q ss_pred chhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCC-CCCceEEEEeCCHHHH
Q 008162 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEA 288 (575)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g-~skg~afV~f~s~~~A 288 (575)
-...+..+..-.+..++ -..|||..+..+.+++||+.+|+.||.|.+|.+.+++++ .-|||+|++|.+..+-
T Consensus 193 mpQAQpiID~vqeeAk~-------fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKK-------FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred CcccchHHHHHHHHHHh-------hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 44333322221111111 137999999999999999999999999999999999854 4689999999999999
Q ss_pred HHHHHHhCCceecceeeeeeh
Q 008162 289 SRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 289 ~~A~~~lng~~i~g~~l~V~~ 309 (575)
..|+..||-..++|..|+|--
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHHhhhcchhhcccceEeccc
Confidence 999999999999999998874
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.3e-19 Score=169.25 Aligned_cols=180 Identities=31% Similarity=0.502 Sum_probs=149.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCC--
Q 008162 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML-IND-- 108 (575)
Q Consensus 32 ~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~-i~g-- 108 (575)
|...|....++|||+-|.+.-.|+|++.+|..||.|.+|.+....+|.+||+|||.|.+..+|..||..|+|.. +.|
T Consensus 11 dsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 11 DSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred ccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCc
Confidence 33445557788999999999999999999999999999999999999999999999999999999999999854 222
Q ss_pred eeeEEeeecchhhhhhhhh-------------------------------------------------------------
Q 008162 109 KQVFVGHFLRKQERETVAI------------------------------------------------------------- 127 (575)
Q Consensus 109 ~~v~v~~~~~~~~~~~~~~------------------------------------------------------------- 127 (575)
..+.|.+....++|.....
T Consensus 91 SSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ 170 (371)
T KOG0146|consen 91 SSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALN 170 (371)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHh
Confidence 3455554443322211110
Q ss_pred --------------------------------------------------------------------------------
Q 008162 128 -------------------------------------------------------------------------------- 127 (575)
Q Consensus 128 -------------------------------------------------------------------------------- 127 (575)
T Consensus 171 angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~ 250 (371)
T KOG0146|consen 171 ANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGV 250 (371)
T ss_pred hcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhH
Confidence
Q ss_pred -------------------------------ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeE
Q 008162 128 -------------------------------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFG 175 (575)
Q Consensus 128 -------------------------------~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~a 175 (575)
..+.+||||..||.+..+.||...|-.||.|.+.+|..| .+..||.||
T Consensus 251 ~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFG 330 (371)
T KOG0146|consen 251 QQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFG 330 (371)
T ss_pred HHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccccccee
Confidence 000067999999999999999999999999999999988 578999999
Q ss_pred EEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccch
Q 008162 176 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211 (575)
Q Consensus 176 fV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 211 (575)
||.|+++.++..||.+|||..|+-++|+|.....+.
T Consensus 331 FVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 331 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred eEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999999999987765553
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=8.9e-20 Score=181.53 Aligned_cols=173 Identities=27% Similarity=0.526 Sum_probs=154.7
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..+.|||++|+++++++.|++.|..||.|.+|++++| .++.++||+||+|++++...+++.. ....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 5788999999999999999999999999999999999 6799999999999999999999853 5678899999999888
Q ss_pred chhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCe
Q 008162 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK 196 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~ 196 (575)
++.+............|||++||.+++++++++.|++||.|..+.++.| .+.+++||+||.|.+++++++++. .+-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8776655444445668999999999999999999999999999999988 678999999999999999999984 68889
Q ss_pred eCCeeEEEcccccchhH
Q 008162 197 FDDREWYVGKAQKKSER 213 (575)
Q Consensus 197 ~~g~~l~v~~a~~~~~~ 213 (575)
+.++.+.|.+|.++...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999877543
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=1.9e-19 Score=179.22 Aligned_cols=173 Identities=25% Similarity=0.460 Sum_probs=150.7
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
..+.+||++|++++++|.|++.|+.||+|.++++++| .+++++||+||+|++.+...+++. ...+.++|+.|.+.++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 4578999999999999999999999999999999999 579999999999999999999985 46788999999998887
Q ss_pred cchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHH
Q 008162 209 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 287 (575)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~ 287 (575)
+..+...... .....+|||++|+..+++++++++|++||.|..+.++.|. +...+||+||.|.++++
T Consensus 84 ~r~~~~~~~~------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 84 SREDQTKVGR------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred Cccccccccc------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 6544332111 0134589999999999999999999999999999998885 78899999999999998
Q ss_pred HHHHHHHhCCceecceeeeeehhccHHHH
Q 008162 288 ASRALAEMNGKMIVSKPLYVAVAQRKEER 316 (575)
Q Consensus 288 A~~A~~~lng~~i~g~~l~V~~a~~~~~r 316 (575)
+.+++. ...+.|+|+.+.|..|.+++..
T Consensus 152 Vdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 152 VDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cceecc-cceeeecCceeeEeeccchhhc
Confidence 888875 7888999999999999988766
No 46
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.77 E-value=2.1e-17 Score=161.70 Aligned_cols=300 Identities=17% Similarity=0.188 Sum_probs=209.1
Q ss_pred hCCCccCCeeE--EEEeCCCCCCCCCCCCC--eEEEcCCCCCcCHHHHHHHHhhcCCeeE--EEEeeCCCCCcccEEEEE
Q 008162 14 LNFTPLNNKSI--RIMYSHRDPSIRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILS--CKIATDGSGQSKGFGFVQ 87 (575)
Q Consensus 14 ~n~~~i~g~~i--ri~~s~~~~~~r~~~~~--~lfV~nLp~~ite~~L~~~F~~~G~I~~--i~v~~~~~g~skG~afV~ 87 (575)
+.+..+..++- .++|..-.-+...+... -|..++||+..++.+|..+|+.. +|.. +.++.+..|...|.|.|.
T Consensus 30 ~~~~~l~~~~e~vn~~y~~gt~s~~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl-~ia~gg~aKOG~~qgrRnge~lvr 108 (508)
T KOG1365|consen 30 EPDELLFSTPEFVNIKYEAGTCSKNHSADDNVVVRARGLPWQSSDQDIARFFKGL-NIANGGRALCLNAQGRRNGEALVR 108 (508)
T ss_pred CcHhhhhcchhhheeeecccchhhccccCcceEEEecCCCCCcccCCHHHHHhhh-hccccceeeeehhhhccccceEEE
Confidence 44555554443 34543322223222222 36689999999999999999976 3322 233344578889999999
Q ss_pred eCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhh----------hhhhhccCCceEEEeCCCcCCCHHHHHHHhccC--
Q 008162 88 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER----------ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY-- 155 (575)
Q Consensus 88 F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~----------~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~-- 155 (575)
|.+.|.-+.|+++. .+.+.++.+.|-.......- ..-..+.+.--|.+++||+++++.++.++|..-
T Consensus 109 f~d~e~RdlalkRh-khh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cp 187 (508)
T KOG1365|consen 109 FVDPEGRDLALKRH-KHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCP 187 (508)
T ss_pred ecCchhhhhhhHhh-hhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCc
Confidence 99999999999874 44556667766544322210 011112345568899999999999999999633
Q ss_pred --CCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhh------
Q 008162 156 --GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE------ 227 (575)
Q Consensus 156 --G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~------ 227 (575)
|.++.+.+++..+|+.+|-|||.|..+++|..|+.+ |...++-|.|.+.++. +.+.++.+.+........
T Consensus 188 v~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRST-aaEvqqvlnr~~s~pLi~~~~sp~ 265 (508)
T KOG1365|consen 188 VTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRST-AAEVQQVLNREVSEPLIPGLTSPL 265 (508)
T ss_pred ccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHh-HHHHHHHHHhhccccccCCCCCCC
Confidence 355677777878999999999999999999999975 5555665555554443 334444444333211110
Q ss_pred -------c-cccccceeEEEecCCCCCCHHHHHHHhhhcCC-eeE--EEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhC
Q 008162 228 -------T-VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT-ITS--CKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296 (575)
Q Consensus 228 -------~-~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~--~~i~~~~~g~skg~afV~f~s~~~A~~A~~~ln 296 (575)
. .......+|.+++||++.+.|+|-++|..|.. |.. |.+..+..|+..|-|||+|.+.++|..|...-|
T Consensus 266 ~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~h 345 (508)
T KOG1365|consen 266 LPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCH 345 (508)
T ss_pred CCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHH
Confidence 0 00112568999999999999999999999974 444 788888899999999999999999999999888
Q ss_pred CceecceeeeeehhccHHHHH
Q 008162 297 GKMIVSKPLYVAVAQRKEERR 317 (575)
Q Consensus 297 g~~i~g~~l~V~~a~~~~~r~ 317 (575)
.+...++.|.|--+.-.+...
T Consensus 346 k~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 346 KKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred HhhcccceEEEeeccHHHHHH
Confidence 888778888887766665543
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=4.5e-19 Score=181.85 Aligned_cols=180 Identities=25% Similarity=0.428 Sum_probs=151.5
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
...++||+-.+....+..+|.++|+.+|.|..|.++.| .+++++|.+||+|.+.+....|| .|.|..+.|..|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 45577999999999999999999999999999999998 57899999999999999999999 79999999999999776
Q ss_pred ccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHH
Q 008162 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 286 (575)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~ 286 (575)
.....+.+... ....-.....+...|||+||-.++++++|+.+|++||.|+.|.++.|. +|.++||+||+|.+.+
T Consensus 256 Eaeknr~a~~s----~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 256 EAEKNRAANAS----PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred HHHHHHHHhcc----ccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 54433321111 111000111122339999999999999999999999999999999986 9999999999999999
Q ss_pred HHHHHHHHhCCceecceeeeeehhccH
Q 008162 287 EASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 287 ~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+|.+|+..|||.+|.|+.|+|.....+
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999986644
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=6.4e-18 Score=166.82 Aligned_cols=263 Identities=16% Similarity=0.298 Sum_probs=189.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEEeee
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG--MLINDKQVFVGHF 116 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng--~~i~g~~v~v~~~ 116 (575)
.+.-|.++|||.+++|+||.+++..||.|..++..+. +..||++|++.++|...+..... -.+.|..|+|.++
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----chhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 5667999999999999999999999999999988763 33799999999999885543322 2356677777654
Q ss_pred cchh---------hhhhh---------------hh--c--------cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEE
Q 008162 117 LRKQ---------ERETV---------------AI--K--------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 162 (575)
Q Consensus 117 ~~~~---------~~~~~---------------~~--~--------~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~ 162 (575)
.-.. .|... .. . ..--.+.|.|+-+-++-|-|..+|++||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 3211 00000 00 0 0012377889999999999999999999999988
Q ss_pred EEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCe--eEEEcccc----------cchhHHHH-----------Hhh
Q 008162 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGKAQ----------KKSEREQE-----------LKG 219 (575)
Q Consensus 163 i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~--~l~v~~a~----------~~~~~~~~-----------~~~ 219 (575)
-....+|- -|+|+|.+.++|..|...|+|..|-+. .|++.++. .++..... +..
T Consensus 182 TF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~ 258 (492)
T KOG1190|consen 182 TFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQ 258 (492)
T ss_pred EEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccch
Confidence 77665443 589999999999999999999887543 23333322 11110000 000
Q ss_pred -----------------------hHHhhhhhccccc-cceeEEEecC-CCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCC
Q 008162 220 -----------------------QFEQAMKETVDKF-QGLNLYIKNL-GDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 274 (575)
Q Consensus 220 -----------------------~~~~~~~~~~~~~-~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~s 274 (575)
............. ..+.|.|.|| .+.+|.+.|..+|+-||+|..|+|+.++
T Consensus 259 ~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk---- 334 (492)
T KOG1190|consen 259 LMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK---- 334 (492)
T ss_pred hhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----
Confidence 0000000000111 1467888888 5788999999999999999999999884
Q ss_pred CceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 275 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 275 kg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+-.|+|.|.+...|.-|++.|+|..+.||+|+|.+.+..
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 357999999999999999999999999999999997744
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.74 E-value=1.1e-16 Score=158.23 Aligned_cols=260 Identities=23% Similarity=0.329 Sum_probs=191.8
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCccc-EEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEeeec-
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG-FGFVQFENKESAQNAIDKLNGMLIND--KQVFVGHFL- 117 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG-~afV~F~t~e~A~~Ai~~lng~~i~g--~~v~v~~~~- 117 (575)
.++|.|+-+-|+-+-|+.+|++||.|+.|.-... +.| .|+|+|.+.+.|..|...|+|.-|-. ..++|.++.
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 3789999999999999999999999987766553 333 49999999999999999999976533 344444332
Q ss_pred --------chhhhhh--------------------------------hh--------------hcc--CCceEEEeCCC-
Q 008162 118 --------RKQERET--------------------------------VA--------------IKT--KFNNVFVKNLD- 140 (575)
Q Consensus 118 --------~~~~~~~--------------------------------~~--------------~~~--~~~~v~V~nLp- 140 (575)
..+.|+- .. ... .++.|.|.||.
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 0000000 00 000 13568888886
Q ss_pred cCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchh-----H--
Q 008162 141 ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE-----R-- 213 (575)
Q Consensus 141 ~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~-----~-- 213 (575)
..+|.+.|..+|+-||.|..|+|++++ +--|+|++.|...|.-|++.|+|..+.|+.|+|..+....- .
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~ 383 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQE 383 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCc
Confidence 468999999999999999999999863 24699999999999999999999999999999988754311 0
Q ss_pred HHHHhhhHHhh-----hhhccc-----cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeC
Q 008162 214 EQELKGQFEQA-----MKETVD-----KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283 (575)
Q Consensus 214 ~~~~~~~~~~~-----~~~~~~-----~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~ 283 (575)
...+...+... ++.... -.++.+|++.|+|.++++|+|++.|..-|...+...+.. +.+-++++.+.
T Consensus 384 d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~ 460 (492)
T KOG1190|consen 384 DQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLE 460 (492)
T ss_pred cccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccC
Confidence 11111111100 011111 234568999999999999999999988887766544332 23679999999
Q ss_pred CHHHHHHHHHHhCCceecce-eeeeehhcc
Q 008162 284 TPEEASRALAEMNGKMIVSK-PLYVAVAQR 312 (575)
Q Consensus 284 s~~~A~~A~~~lng~~i~g~-~l~V~~a~~ 312 (575)
+.|+|..|+-.+|...+++. .|+|+|.+.
T Consensus 461 sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 461 SVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999754 899998764
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1e-17 Score=174.52 Aligned_cols=268 Identities=20% Similarity=0.396 Sum_probs=199.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhc-----------C-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSF-----------G-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~-----------G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~ 107 (575)
...++|.+++..++++....+|..- | .+++|.+.. .+++||++|.+.++|..|+ .+++..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhh-cccchhhC
Confidence 4459999999999999999998754 3 367776655 5779999999999999999 56888888
Q ss_pred CeeeEEeeecchhhhhhhh-----------------hccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCC
Q 008162 108 DKQVFVGHFLRKQERETVA-----------------IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDG 169 (575)
Q Consensus 108 g~~v~v~~~~~~~~~~~~~-----------------~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g 169 (575)
|..+.+............. .-..-..++|++||...++.+++|+.+.||.+....+..| .+|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 8877775433221110000 0112256999999999999999999999999999999988 569
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhH------HhhhhhccccccceeEEEecC-
Q 008162 170 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF------EQAMKETVDKFQGLNLYIKNL- 242 (575)
Q Consensus 170 ~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~V~nl- 242 (575)
.++||+|.+|.+......|+..|||..+.++.|.|.++.............. -..............|.+.|+
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 9999999999999999999999999999999999988865433221111100 000000111222334444444
Q ss_pred -CCCC-CH-------HHHHHHhhhcCCeeEEEEeeC-C---CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 243 -GDSI-DD-------EKLKELFSEFGTITSCKVMRD-P---SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 243 -~~~~-t~-------~~l~~~F~~~G~v~~~~i~~~-~---~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
+++. .+ |+++..|++||.|.+|.|.++ . ..-+.|..||+|++.+++++|.++|+|..+.++.+..++
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 1111 11 567777889999999999877 3 234578899999999999999999999999999999988
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
....
T Consensus 489 ydeD 492 (500)
T KOG0120|consen 489 YDED 492 (500)
T ss_pred cCHH
Confidence 7654
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=4.1e-16 Score=138.57 Aligned_cols=152 Identities=27% Similarity=0.377 Sum_probs=126.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..+++|+|+|||.+|.+++|.++|.+||.|..|.+... .+ ...||||+|++..+|+.||.--+|+.++|..|.|.+..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r-~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR-PG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC-CC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 35678999999999999999999999999999987653 22 45799999999999999999999999999999998765
Q ss_pred chhhhhh--------------------hhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEE
Q 008162 118 RKQERET--------------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177 (575)
Q Consensus 118 ~~~~~~~--------------------~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV 177 (575)
.-..... .....+...|.|.+||.+-++++|+++..+.|.|--..+.+| |++.|
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 3211000 011223356999999999999999999999999988888876 37899
Q ss_pred EeCCHHHHHHHHHHHCCCee
Q 008162 178 NFENADDAAKAVEALNGKKF 197 (575)
Q Consensus 178 ~F~~~e~A~~Ai~~l~~~~~ 197 (575)
+|...|+.+-|++.|....+
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeehhhHHHHHHhhccccc
Confidence 99999999999999876554
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=9.5e-16 Score=152.46 Aligned_cols=181 Identities=21% Similarity=0.382 Sum_probs=148.8
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhc-cCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFG-EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~-~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
.+.+.+||.|||+++.+.+|+++|. +.|+|+.|.++.|..|++||||.|+|+++|.+++|++.||.+.+.||.|.|...
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4556799999999999999999995 568999999999999999999999999999999999999999999999999766
Q ss_pred ccchhHHHH-----------------------------------------------------Hhhh--------------
Q 008162 208 QKKSEREQE-----------------------------------------------------LKGQ-------------- 220 (575)
Q Consensus 208 ~~~~~~~~~-----------------------------------------------------~~~~-------------- 220 (575)
......+.. ....
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 542211100 0000
Q ss_pred -HHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCce
Q 008162 221 -FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299 (575)
Q Consensus 221 -~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~ 299 (575)
+..... .........+||.||++.+....|++.|.--|.|+.+.+-.|+.|.++||+.++|+.+-+|..||..+++.-
T Consensus 202 ~Flr~~h-~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLH-IFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhcc-CCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 000000 012223456999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ecceeeeeehh
Q 008162 300 IVSKPLYVAVA 310 (575)
Q Consensus 300 i~g~~l~V~~a 310 (575)
+..++..+.+.
T Consensus 281 ~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 281 LFDRRMTVRLD 291 (608)
T ss_pred Cccccceeecc
Confidence 88888888774
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=139.84 Aligned_cols=175 Identities=23% Similarity=0.402 Sum_probs=143.4
Q ss_pred CceEEEeCCCcCCCHHHHHH----HhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcc
Q 008162 131 FNNVFVKNLDESTTDEDLKK----IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~----~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~ 206 (575)
+.+|||.||...+..++|++ +|+.||.|.+|...+ +.+.+|-|||.|++.+.|..|++.|+|..+.|+.+.+.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 34899999999999999998 999999999888764 578899999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhHHhhhh----------------h----------------ccccccceeEEEecCCCCCCHHHHHHH
Q 008162 207 AQKKSEREQELKGQFEQAMK----------------E----------------TVDKFQGLNLYIKNLGDSIDDEKLKEL 254 (575)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~----------------~----------------~~~~~~~~~l~V~nl~~~~t~~~l~~~ 254 (575)
|..++..-......+....+ + .....+...+++.|||.+++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 98765433221100000000 0 111345678999999999999999999
Q ss_pred hhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceec-ceeeeeehhc
Q 008162 255 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQ 311 (575)
Q Consensus 255 F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~-g~~l~V~~a~ 311 (575)
|+.|.....++++... ++.|||+|.+...|..|...+.|..|- ...+.|.+++
T Consensus 167 f~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999988763 678999999999999999999998885 7788887764
No 54
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.65 E-value=7e-15 Score=143.76 Aligned_cols=261 Identities=20% Similarity=0.295 Sum_probs=197.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH--hcCCccCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK--LNGMLINDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~--lng~~i~g~~v~v~~ 115 (575)
+.+--|.|++|-..++|.||.+.++.||.|.-+..+. .+..|+|+|++.+.|+.|+.- -|...+.|...++.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P-----~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP-----HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEecc-----ccceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 4455699999999999999999999999997665554 566899999999999999863 255677888888888
Q ss_pred ecchhhhhhhhhccCCceEE---EeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHH
Q 008162 116 FLRKQERETVAIKTKFNNVF---VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~v~---V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l 192 (575)
+..+..+........-+.|. |-|--+.+|-+-|..++...|.|..|.|++. +|. -|.|+|++.+.|++|..+|
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeechhHHHHHHHhhc
Confidence 86655444433333333333 4455578999999999999999999999975 444 6899999999999999999
Q ss_pred CCCeeCC--eeEEEcccccchhH---------H------------------------------HHHhh-h--HHh-----
Q 008162 193 NGKKFDD--REWYVGKAQKKSER---------E------------------------------QELKG-Q--FEQ----- 223 (575)
Q Consensus 193 ~~~~~~g--~~l~v~~a~~~~~~---------~------------------------------~~~~~-~--~~~----- 223 (575)
||..|-. ..|++.++....-+ . .+... . +..
T Consensus 180 NGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~ 259 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHG 259 (494)
T ss_pred ccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCC
Confidence 9988743 35666666432100 0 00000 0 000
Q ss_pred -----------hhh------hccccccceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCH
Q 008162 224 -----------AMK------ETVDKFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 285 (575)
Q Consensus 224 -----------~~~------~~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~ 285 (575)
... ......+++.+.|-+|+- .++-+.|..+|.-||+|+.|++|+.+ .|.|.|++.+.
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~ 335 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDA 335 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcH
Confidence 000 001123578899999974 56789999999999999999999885 45799999999
Q ss_pred HHHHHHHHHhCCceecceeeeeehhc
Q 008162 286 EEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 286 ~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
.+.++|+..||+..+.|.+|.|.+++
T Consensus 336 ~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 336 YAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred HHHHHHHHHhccCccccceEEEeecc
Confidence 99999999999999999999999765
No 55
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.63 E-value=4.3e-15 Score=150.91 Aligned_cols=176 Identities=22% Similarity=0.277 Sum_probs=138.4
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccch
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 211 (575)
--|.+.+|||++|++||.++|+.++ |+++++.+ .+|+..|-|||+|++.|++++|++ .+...+..|.|.|..+....
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 3588899999999999999999995 66654443 479999999999999999999996 58888999999998776543
Q ss_pred hHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeE-EEEeeCCCCCCCceEEEEeCCHHHHHH
Q 008162 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDPSGISKGSGFVAFSTPEEASR 290 (575)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-~~i~~~~~g~skg~afV~f~s~~~A~~ 290 (575)
.... .+.. ..........|.+++||+.+|++||.++|+.--.|.. +-+..+..+++.|-|||+|++.+.|++
T Consensus 88 ~d~~-~~~~------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 88 ADWV-MRPG------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cccc-ccCC------CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 3111 1100 0011123347999999999999999999998755555 445677789999999999999999999
Q ss_pred HHHHhCCceecceeeeeehhccHHHHHH
Q 008162 291 ALAEMNGKMIVSKPLYVAVAQRKEERRA 318 (575)
Q Consensus 291 A~~~lng~~i~g~~l~V~~a~~~~~r~~ 318 (575)
|+. -|...|.-+-|.|-.+...+.+..
T Consensus 161 Al~-rhre~iGhRYIEvF~Ss~~e~~~~ 187 (510)
T KOG4211|consen 161 ALG-RHRENIGHRYIEVFRSSRAEVKRA 187 (510)
T ss_pred HHH-HHHHhhccceEEeehhHHHHHHhh
Confidence 997 677788888899988877776654
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=1.8e-15 Score=136.26 Aligned_cols=81 Identities=33% Similarity=0.577 Sum_probs=76.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
..+++|||+||++++|+++|+++|++||.|.+++|+.|. +++++|||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 356789999999999999999999999999999999885 7899999999999999999999999999999999999998
Q ss_pred cc
Q 008162 311 QR 312 (575)
Q Consensus 311 ~~ 312 (575)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 64
No 57
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.59 E-value=3.5e-14 Score=131.64 Aligned_cols=162 Identities=23% Similarity=0.376 Sum_probs=133.1
Q ss_pred CCeEEEcCCCCCcCHHHHHH----HHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 40 TGNIFIKNLDKSIDHKALHD----TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~----~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.++|||.||+..|..++|+. +|+.||.|++|...+ +.+.+|.|||.|.+.+.|..|+..|+|..+-|+.+.|.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 44999999999999999877 999999998887765 567899999999999999999999999999999999988
Q ss_pred ecchhhhhhh--------------------------------------------hhccCCceEEEeCCCcCCCHHHHHHH
Q 008162 116 FLRKQERETV--------------------------------------------AIKTKFNNVFVKNLDESTTDEDLKKI 151 (575)
Q Consensus 116 ~~~~~~~~~~--------------------------------------------~~~~~~~~v~V~nLp~~~tee~L~~~ 151 (575)
+..+.+.... ........+|+.|||.+++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 7644321111 00112345999999999999999999
Q ss_pred hccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeC-CeeEEEccc
Q 008162 152 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKA 207 (575)
Q Consensus 152 F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~-g~~l~v~~a 207 (575)
|+.|.--..+.++... ++.+||+|.+...+..|...+.+..+. ...+.+..+
T Consensus 167 f~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 9999888888887642 568999999999999999999888876 555666554
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=7.8e-15 Score=132.06 Aligned_cols=82 Identities=30% Similarity=0.608 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
..+++|||+||+.++|+++|+++|+.||.|.+|+++.| .++.++|||||+|++.++|++|++.||+..|.|+.|.|.+.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34668999999999999999999999999999999998 58899999999999999999999999999999999999887
Q ss_pred cch
Q 008162 117 LRK 119 (575)
Q Consensus 117 ~~~ 119 (575)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 643
No 59
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.7e-14 Score=128.28 Aligned_cols=171 Identities=20% Similarity=0.362 Sum_probs=132.7
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
..++|||+|||.++.+.+|.++|.+||.|..|.+.... ..-.||||+|++..+|+.||..-++..++|.+|.|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 45789999999999999999999999999999876432 2356999999999999999999999999999999999865
Q ss_pred chhHHHHHhhhHHh---------hhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEE
Q 008162 210 KSEREQELKGQFEQ---------AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 280 (575)
Q Consensus 210 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV 280 (575)
....... ...+.. ...-...+-....|.|.+||.+-++++|+++...-|.|....+.+| |.+.|
T Consensus 83 gr~s~~~-~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 83 GRSSSDR-RGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCccccc-ccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 4211000 000000 0000111223457999999999999999999999999999999888 37899
Q ss_pred EeCCHHHHHHHHHHhCCceec--ceeeeeeh
Q 008162 281 AFSTPEEASRALAEMNGKMIV--SKPLYVAV 309 (575)
Q Consensus 281 ~f~s~~~A~~A~~~lng~~i~--g~~l~V~~ 309 (575)
.|...|+..-|+..|....+. |-..++.+
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 999999999999999877664 55544443
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=2.9e-13 Score=132.60 Aligned_cols=293 Identities=19% Similarity=0.153 Sum_probs=199.8
Q ss_pred CCCHHHHHHHHH--HhCCCccCCeeEEEEeCCCC-------CCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEE
Q 008162 1 MFMLSSAARALD--VLNFTPLNNKSIRIMYSHRD-------PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 71 (575)
Q Consensus 1 f~~~~dA~~a~~--~~n~~~i~g~~iri~~s~~~-------~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~ 71 (575)
|++.+-|+.++. +-|-..|.|+.--+-+|-.+ ++.+-+..--+-|-|-=+.||-+-|+.++...|.|+.|.
T Consensus 74 fedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIv 153 (494)
T KOG1456|consen 74 FEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIV 153 (494)
T ss_pred eccccchhhheehhccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEE
Confidence 344444554432 11344566666555555222 221111111133555556899999999999999999999
Q ss_pred EeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc--CCeeeEEeeecchhhh---------------------------
Q 008162 72 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI--NDKQVFVGHFLRKQER--------------------------- 122 (575)
Q Consensus 72 v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i--~g~~v~v~~~~~~~~~--------------------------- 122 (575)
|.+. + --.|.|+|++.+.|.+|...|||..| ....++|.+++...-.
T Consensus 154 Ifkk-n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~ 229 (494)
T KOG1456|consen 154 IFKK-N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHY 229 (494)
T ss_pred EEec-c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCC
Confidence 9875 3 34799999999999999999999765 3345666554321100
Q ss_pred ----hhhh---------------------------------------------hccCCceEEEeCCCc-CCCHHHHHHHh
Q 008162 123 ----ETVA---------------------------------------------IKTKFNNVFVKNLDE-STTDEDLKKIF 152 (575)
Q Consensus 123 ----~~~~---------------------------------------------~~~~~~~v~V~nLp~-~~tee~L~~~F 152 (575)
.... .....+.+.|.+|.. .++-+.|..+|
T Consensus 230 ~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ 309 (494)
T KOG1456|consen 230 DRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLF 309 (494)
T ss_pred ccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhh
Confidence 0000 000113488899985 46778899999
Q ss_pred ccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHH----------HHHh----
Q 008162 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE----------QELK---- 218 (575)
Q Consensus 153 ~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~----------~~~~---- 218 (575)
..||.|..|++++.+. |.|.|+.-|..+.++|+..||+..+.|.+|.+..+.-..-.. ...+
T Consensus 310 ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~ 385 (494)
T KOG1456|consen 310 CLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSG 385 (494)
T ss_pred hhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhccc
Confidence 9999999999998754 479999999999999999999999999999887764321110 0000
Q ss_pred ---hhHH--hhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCC-eeEEEEeeCCCCCCCceEEEEeCCHHHHHHHH
Q 008162 219 ---GQFE--QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292 (575)
Q Consensus 219 ---~~~~--~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~ 292 (575)
..+. ....+.....+++.|+.-|.|..+||+.|.++|..-+. -++++|+.-++-+ ..-++++|++.++|..||
T Consensus 386 SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kser-SssGllEfe~~s~Aveal 464 (494)
T KOG1456|consen 386 SKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSER-SSSGLLEFENKSDAVEAL 464 (494)
T ss_pred ccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccc-cccceeeeehHHHHHHHH
Confidence 0010 01111222346788999999999999999999976653 5677887665333 346899999999999999
Q ss_pred HHhCCceecc
Q 008162 293 AEMNGKMIVS 302 (575)
Q Consensus 293 ~~lng~~i~g 302 (575)
..+|...+.+
T Consensus 465 ~~~NH~pi~~ 474 (494)
T KOG1456|consen 465 MKLNHYPIEG 474 (494)
T ss_pred HHhccccccC
Confidence 9999988864
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=6.5e-14 Score=136.34 Aligned_cols=180 Identities=19% Similarity=0.301 Sum_probs=139.8
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCee--------EEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCe
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTIT--------SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~--------~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~ 200 (575)
..+++|||.|||.++|.+++.++|++||.|. .|++.+++.|+-||-|+|.|-..+++..|++.|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4567899999999999999999999999874 47888999999999999999999999999999999999999
Q ss_pred eEEEcccccchhHH--------------HHHh---hh-H--HhhhhhccccccceeEEEecCC----CCCC-------HH
Q 008162 201 EWYVGKAQKKSERE--------------QELK---GQ-F--EQAMKETVDKFQGLNLYIKNLG----DSID-------DE 249 (575)
Q Consensus 201 ~l~v~~a~~~~~~~--------------~~~~---~~-~--~~~~~~~~~~~~~~~l~V~nl~----~~~t-------~~ 249 (575)
.|.|.+|.-....+ ..+. .. + ..........-..++|.++|+= ...+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 99999985221100 0000 00 0 0000011222345688999982 2222 46
Q ss_pred HHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 250 ~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
+|++-+++||.|.+|.|... ...|.+-|.|.+.++|..||..|+|+.+.|+.|...+..
T Consensus 292 dl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 78888999999999998744 236789999999999999999999999999999988754
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=3.6e-15 Score=139.69 Aligned_cols=168 Identities=27% Similarity=0.437 Sum_probs=133.2
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccch
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 211 (575)
..|||++|++.+.+.+|.++|..||.+..+.+. .||+||+|.+..+|..|+..++++.+.+-.+.+.++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 358999999999999999999999999998876 4699999999999999999999999999888888876432
Q ss_pred hHHHHHhhhH-H-hhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHH
Q 008162 212 EREQELKGQF-E-QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 289 (575)
Q Consensus 212 ~~~~~~~~~~-~-~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~ 289 (575)
.......... . ............+.+.|.|+..++.+.+|.+.|+.+|.++...++ ++++||+|++.++|.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAK 147 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhh
Confidence 2110000000 0 001111112345789999999999999999999999999665552 569999999999999
Q ss_pred HHHHHhCCceecceeeeeehhccH
Q 008162 290 RALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 290 ~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+|++.+++..+.++.|.+......
T Consensus 148 ra~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred hcchhccchhhcCceeeecccCcc
Confidence 999999999999999999554433
No 63
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.54 E-value=1.8e-13 Score=133.28 Aligned_cols=167 Identities=21% Similarity=0.320 Sum_probs=134.9
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCee--------EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNIL--------SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~--------~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v 111 (575)
..+|||.|||.+||.+++.++|+.+|-|. .||+..+..|.-||-|++.|-..++++.|++-|++..+.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 44699999999999999999999999874 4999999999999999999999999999999999999999999
Q ss_pred EEeeecc----------hhh-------h-----hh----------hhhccCCceEEEeCCC----cCCC-------HHHH
Q 008162 112 FVGHFLR----------KQE-------R-----ET----------VAIKTKFNNVFVKNLD----ESTT-------DEDL 148 (575)
Q Consensus 112 ~v~~~~~----------~~~-------~-----~~----------~~~~~~~~~v~V~nLp----~~~t-------ee~L 148 (575)
.|..+.- +.. + .. .......++|.++|+= ...+ +++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 9976531 000 0 00 0011234678888872 1222 4667
Q ss_pred HHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 149 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 149 ~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
.+-+++||.|.+|+|... .+.|.+-|.|.+.++|..||+.|+|..+.||.|....-..
T Consensus 294 ~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 778999999999998744 3467899999999999999999999999999998766543
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=4.2e-14 Score=111.04 Aligned_cols=70 Identities=47% Similarity=0.797 Sum_probs=67.5
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeee
Q 008162 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306 (575)
Q Consensus 237 l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~ 306 (575)
|||+|||.++|+++|+++|+.||.|..++++.+.++.++++|||+|.+.++|.+|++.+||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999885
No 65
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.6e-14 Score=135.42 Aligned_cols=153 Identities=29% Similarity=0.492 Sum_probs=128.5
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhh
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~ 121 (575)
.|||++||+.+.++||..+|+.||.|..|.+. .||+||+|.+..+|+.|+-.+|+..|.+..+.|.+......
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 58999999999999999999999999998775 36999999999999999999999999998877776653211
Q ss_pred --------------hhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHH
Q 008162 122 --------------RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 187 (575)
Q Consensus 122 --------------~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~ 187 (575)
+.........+.+.|.++...+.+.+|.+.|+.+|.+....+. .+++||+|++.+++.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhh
Confidence 1111112345679999999999999999999999998655442 5599999999999999
Q ss_pred HHHHHCCCeeCCeeEEEcccc
Q 008162 188 AVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 188 Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
|+..+++..+.++.|.+....
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred cchhccchhhcCceeeecccC
Confidence 999999999999999984443
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=5.6e-14 Score=110.33 Aligned_cols=70 Identities=40% Similarity=0.745 Sum_probs=67.2
Q ss_pred EEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 008162 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 112 (575)
Q Consensus 43 lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~ 112 (575)
|||+|||.++|+++|+++|+.||.|..|++..+..+.++|||||+|.+.++|+.|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999998874
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.52 E-value=1.3e-12 Score=138.88 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=74.1
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
+..++||||+.|+.++++.||..+|+.||.|.+|.+... +|||||++....+|.+|+.+|++..+.++.|+|+|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 456789999999999999999999999999999998876 899999999999999999999999999999999999
Q ss_pred ccHHH
Q 008162 311 QRKEE 315 (575)
Q Consensus 311 ~~~~~ 315 (575)
-.+..
T Consensus 493 ~g~G~ 497 (894)
T KOG0132|consen 493 VGKGP 497 (894)
T ss_pred ccCCc
Confidence 76533
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=133.78 Aligned_cols=103 Identities=26% Similarity=0.442 Sum_probs=88.0
Q ss_pred hCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHH
Q 008162 14 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 93 (575)
Q Consensus 14 ~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~ 93 (575)
-|...+.|.++..--+.+. -.+.+-++|+|.|||....+-||+.+|.+||+|++|.|+.++.| |||||||+|++.+|
T Consensus 72 ~~~~~t~g~~~~~~~st~s--~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~d 148 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNS--SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPAD 148 (376)
T ss_pred cCCCCCCCCccccCCCCcC--CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhh
Confidence 3555666766655433322 23456778999999999999999999999999999999999888 99999999999999
Q ss_pred HHHHHHHhcCCccCCeeeEEeeecch
Q 008162 94 AQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 94 A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
|++|.++|+|..+.||+|+|+....+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999887765
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.2e-13 Score=133.54 Aligned_cols=80 Identities=29% Similarity=0.532 Sum_probs=75.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
....|+|.|||+...|-||+..|++||.|.+|+|+.+++| |||||||+|++.+||.+|-++|||..+.||+|.|..+..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4457999999999999999999999999999999999887 699999999999999999999999999999999999876
Q ss_pred H
Q 008162 313 K 313 (575)
Q Consensus 313 ~ 313 (575)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 70
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=4.6e-13 Score=133.97 Aligned_cols=164 Identities=32% Similarity=0.469 Sum_probs=123.8
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
.++|||+||+.++++++|.++|..||.|..+.+..| .+|+++|||||+|.+.++|..|++.+++..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999999 5899999999999999999999999999999999999999652
Q ss_pred ----chhHHHH--HhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCC-CCceEEEEe
Q 008162 210 ----KSEREQE--LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAF 282 (575)
Q Consensus 210 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~-skg~afV~f 282 (575)
....... ....................+++.+++..++..++...|..+|.+....+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111100 000000111122334467789999999999999999999999999777776554332 334444555
Q ss_pred CCHHHHHHHHHH
Q 008162 283 STPEEASRALAE 294 (575)
Q Consensus 283 ~s~~~A~~A~~~ 294 (575)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 555555544443
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=9e-13 Score=120.87 Aligned_cols=157 Identities=18% Similarity=0.361 Sum_probs=118.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHHHhcCCccC---CeeeEE
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG--QSKGFGFVQFENKESAQNAIDKLNGMLIN---DKQVFV 113 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g--~skG~afV~F~t~e~A~~Ai~~lng~~i~---g~~v~v 113 (575)
..++|||.+||.++.-.+|+.+|..|--...+.+.....+ ..+-+|||.|.+..+|.+|++.|||..++ +..++|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4889999999999999999999999987777766654222 25679999999999999999999999874 456666
Q ss_pred eeecchhhhhhhh--h----------------------------------------------------------------
Q 008162 114 GHFLRKQERETVA--I---------------------------------------------------------------- 127 (575)
Q Consensus 114 ~~~~~~~~~~~~~--~---------------------------------------------------------------- 127 (575)
...+...++.... .
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 5443211110000 0
Q ss_pred --------------ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHC
Q 008162 128 --------------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193 (575)
Q Consensus 128 --------------~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~ 193 (575)
....++|||.||..+++|++|+.+|+.|.-...++|. .+.| -..+|+.|++.+.|..|+..|.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCC--cceEeecHHHHHHHHHHHHHhh
Confidence 0000349999999999999999999999765555543 3444 3478999999999999999988
Q ss_pred CCeeC
Q 008162 194 GKKFD 198 (575)
Q Consensus 194 ~~~~~ 198 (575)
|..+.
T Consensus 270 g~~~s 274 (284)
T KOG1457|consen 270 GNLLS 274 (284)
T ss_pred cceec
Confidence 87653
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.5e-13 Score=127.59 Aligned_cols=80 Identities=29% Similarity=0.453 Sum_probs=72.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
..-++|||++|+|++.+|+|+++|++||+|+++.|+.|+ +|+|||||||+|.+.++|.+|++. .+-.|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 345789999999999999999999999999999999886 899999999999999999999974 455889999999987
Q ss_pred cc
Q 008162 311 QR 312 (575)
Q Consensus 311 ~~ 312 (575)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 63
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=4.3e-13 Score=105.56 Aligned_cols=70 Identities=40% Similarity=0.701 Sum_probs=65.2
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeee
Q 008162 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306 (575)
Q Consensus 237 l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~ 306 (575)
|||+|||+++++++|+++|+.||.|..+++..+++|.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987789999999999999999999999999999999875
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.42 E-value=1.7e-12 Score=119.16 Aligned_cols=168 Identities=20% Similarity=0.349 Sum_probs=122.1
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CC-CCcceeEEEEeCCHHHHHHHHHHHCCCeeC---CeeEEEc
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GD-GKSKCFGFVNFENADDAAKAVEALNGKKFD---DREWYVG 205 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~-g~skg~afV~F~~~e~A~~Ai~~l~~~~~~---g~~l~v~ 205 (575)
-++|||.+||.++.-.||..+|..|---+...+... +. ...+-+|||+|.+..+|..|.+.|||..++ +..|.+.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 478999999999999999999999965555555433 32 346689999999999999999999999985 4556666
Q ss_pred ccccchhHHHH--------------------Hh-hhH----------------------------------Hhh------
Q 008162 206 KAQKKSEREQE--------------------LK-GQF----------------------------------EQA------ 224 (575)
Q Consensus 206 ~a~~~~~~~~~--------------------~~-~~~----------------------------------~~~------ 224 (575)
.+.....+... .. ... ...
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 65433221100 00 000 000
Q ss_pred -------hhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCC
Q 008162 225 -------MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297 (575)
Q Consensus 225 -------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng 297 (575)
..-......+.+|||.||..++||++|+.+|+.|-....++|... .| -..|||.|.+.+.|..|+..|.|
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHHhhc
Confidence 000000112457999999999999999999999998888887533 23 57899999999999999999999
Q ss_pred ceec
Q 008162 298 KMIV 301 (575)
Q Consensus 298 ~~i~ 301 (575)
..|-
T Consensus 271 ~~~s 274 (284)
T KOG1457|consen 271 NLLS 274 (284)
T ss_pred ceec
Confidence 8763
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.41 E-value=8.8e-13 Score=103.76 Aligned_cols=70 Identities=34% Similarity=0.657 Sum_probs=64.8
Q ss_pred EEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 008162 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 112 (575)
Q Consensus 43 lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~ 112 (575)
|+|+|||.++++++|+++|+.||.|..+++..+.++.++|+|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999997788999999999999999999999999999999874
No 76
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.5e-12 Score=136.27 Aligned_cols=207 Identities=23% Similarity=0.404 Sum_probs=154.5
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCC-----------------CCCCCC----CCCCeEEEcCCCCCcCHHHHHH
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRK----SGTGNIFIKNLDKSIDHKALHD 59 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~-----------------~~~~r~----~~~~~lfV~nLp~~ite~~L~~ 59 (575)
|.+.++|..|+- ++...+.|.+.+|.-.+. +...+. -....+||++||..+++..+.+
T Consensus 230 ~~s~~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~E 308 (500)
T KOG0120|consen 230 FRSISEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKE 308 (500)
T ss_pred ecCCCchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHH
Confidence 566778888766 778888999998742111 111111 1345599999999999999999
Q ss_pred HHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhhhhc----------
Q 008162 60 TFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------- 128 (575)
Q Consensus 60 ~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~~---------- 128 (575)
+...||.+....+++| .+|.++||||.+|.+......|+..|||+.+.++++.|..+............
T Consensus 309 ll~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~ 388 (500)
T KOG0120|consen 309 LLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIP 388 (500)
T ss_pred HHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccch
Confidence 9999999999999999 56899999999999999999999999999999999999776543322211111
Q ss_pred --------cCCceEEEeCCC--cC-CCH-------HHHHHHhccCCCeeEEEEEeC-CC---CCcceeEEEEeCCHHHHH
Q 008162 129 --------TKFNNVFVKNLD--ES-TTD-------EDLKKIFGEYGTITSAVVMRD-GD---GKSKCFGFVNFENADDAA 186 (575)
Q Consensus 129 --------~~~~~v~V~nLp--~~-~te-------e~L~~~F~~~G~i~~i~i~~d-~~---g~skg~afV~F~~~e~A~ 186 (575)
.....|.+.|+= .+ .++ |+++.-+++||.|.+|.+.++ .+ ....|..||+|.+.++++
T Consensus 389 ~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~q 468 (500)
T KOG0120|consen 389 LLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQ 468 (500)
T ss_pred hhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHH
Confidence 111223333321 01 122 345556789999999999877 33 345678899999999999
Q ss_pred HHHHHHCCCeeCCeeEEEcccc
Q 008162 187 KAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 187 ~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
+|.++|+|.++.+|.+...+..
T Consensus 469 rA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 469 RAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHccCceeCCcEEEEEecC
Confidence 9999999999999998887654
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=8.7e-13 Score=122.91 Aligned_cols=84 Identities=30% Similarity=0.487 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.+..+++|.|.||+.+++|++|.++|..||.|..|.|..| ++|.+||||||+|.+.++|.+||+.|||+-++.-.|.|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 4457888999999999999999999999999999999999 799999999999999999999999999999998889998
Q ss_pred eecch
Q 008162 115 HFLRK 119 (575)
Q Consensus 115 ~~~~~ 119 (575)
++.++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 87653
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=3e-12 Score=128.09 Aligned_cols=150 Identities=31% Similarity=0.519 Sum_probs=117.1
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec-
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL- 117 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~- 117 (575)
..+|||+|||.++|+++|+++|..||.|..|.+..| .++.++|||||+|.+.++|..|++.+++..+.|+.+.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999999 589999999999999999999999999999999999999853
Q ss_pred ---chhhhhh--------------hhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCC-CcceeEEEEe
Q 008162 118 ---RKQERET--------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNF 179 (575)
Q Consensus 118 ---~~~~~~~--------------~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g-~skg~afV~F 179 (575)
.+..... .........+++.+++..++..++...|..+|.+....+.....+ ....+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 2222210 001234467999999999999999999999999966666544332 2333444444
Q ss_pred CCHHHHHHHH
Q 008162 180 ENADDAAKAV 189 (575)
Q Consensus 180 ~~~e~A~~Ai 189 (575)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4443333333
No 79
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1e-12 Score=122.46 Aligned_cols=81 Identities=33% Similarity=0.566 Sum_probs=77.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|.|.||+.++++++|+++|.+||.|..+.|.+|+ +|.+||||||.|.+.++|.+||+.|||.-++.--|.|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999986 89999999999999999999999999999999999999988
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 80
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=7.6e-13 Score=122.95 Aligned_cols=80 Identities=35% Similarity=0.593 Sum_probs=71.2
Q ss_pred ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcc
Q 008162 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206 (575)
Q Consensus 128 ~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~ 206 (575)
+..+++|||++|+|++.+|+|+++|++||+|.+.+|+.| .+|+|||||||+|+|.++|.+|++. -.-.|+||+..++.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 456789999999999999999999999999999999999 6899999999999999999999964 45668888877766
Q ss_pred cc
Q 008162 207 AQ 208 (575)
Q Consensus 207 a~ 208 (575)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 54
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.4e-12 Score=123.94 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=69.4
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
.++|||+||++.+|+++|+++|+.||.|++|+|..+.. ++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 45899999999999999999999999999999998853 57999999999999999995 99999999999999744
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.35 E-value=1.1e-12 Score=118.89 Aligned_cols=78 Identities=27% Similarity=0.467 Sum_probs=75.0
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
.++|.|.||.+.++.++|+.+|++||.|-+|.|..|. +..++|||||.|....+|+.|++.|+|..++|+.|.|.+|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4689999999999999999999999999999999997 88999999999999999999999999999999999999876
No 83
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=7.7e-12 Score=123.07 Aligned_cols=202 Identities=19% Similarity=0.203 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHHhCCCccCCeeEEEEeCCCCC--------------CCCCCCCCeEEEcCCCCCcCHHHHHHHHh---h-
Q 008162 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDP--------------SIRKSGTGNIFIKNLDKSIDHKALHDTFS---S- 63 (575)
Q Consensus 2 ~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~--------------~~r~~~~~~lfV~nLp~~ite~~L~~~F~---~- 63 (575)
-.+|.-+-||+ .....+.+++|.|....-+. -+-+...-.|.+++||+++++.|+.++|. .
T Consensus 110 ~d~e~Rdlalk-Rhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv 188 (508)
T KOG1365|consen 110 VDPEGRDLALK-RHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPV 188 (508)
T ss_pred cCchhhhhhhH-hhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcc
Confidence 34444455665 33345566777664322221 11222233488899999999999999996 2
Q ss_pred cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchh--------hhhhh----------
Q 008162 64 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ--------ERETV---------- 125 (575)
Q Consensus 64 ~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~--------~~~~~---------- 125 (575)
-|....|.+++..+|+..|-|||.|+.+++|..|+.+..+ .+.-|.|.+-++.... .....
T Consensus 189 ~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq-~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p 267 (508)
T KOG1365|consen 189 TGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQ-NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLP 267 (508)
T ss_pred cCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHH-HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCC
Confidence 2356788899989999999999999999999999988544 2333333222111100 00000
Q ss_pred -------hhccCCceEEEeCCCcCCCHHHHHHHhccCCC-eeE--EEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCC
Q 008162 126 -------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT-ITS--AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 195 (575)
Q Consensus 126 -------~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~-i~~--i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~ 195 (575)
........|.+++||++.+.|+|.++|..|.. |.- +.+..+..|+..|-|||+|.+.|+|..|....+++
T Consensus 268 ~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 268 GGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred CCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 00112356999999999999999999999963 333 66677788999999999999999999999888877
Q ss_pred eeCCeeEEEc
Q 008162 196 KFDDREWYVG 205 (575)
Q Consensus 196 ~~~g~~l~v~ 205 (575)
....|.|.|.
T Consensus 348 ~mk~RYiEvf 357 (508)
T KOG1365|consen 348 LMKSRYIEVF 357 (508)
T ss_pred hcccceEEEe
Confidence 7666666553
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.9e-12 Score=112.82 Aligned_cols=77 Identities=30% Similarity=0.544 Sum_probs=71.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+||+..+++.||..+|..||.|.+|.|..++ .|||||+|+++.||..|+..|+|+.|+|..|.|++..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 346789999999999999999999999999999998863 7899999999999999999999999999999999876
Q ss_pred c
Q 008162 312 R 312 (575)
Q Consensus 312 ~ 312 (575)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=1.1e-11 Score=125.56 Aligned_cols=79 Identities=23% Similarity=0.455 Sum_probs=73.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCH--HHHHHHHHHhCCceecceeeeeeh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP--EEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~--~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
..+.+|||+||++.+++++|+.+|+.||.|.+|.|+++ +| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34678999999999999999999999999999999944 56 99999999987 789999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9875
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=1.4e-11 Score=96.19 Aligned_cols=72 Identities=43% Similarity=0.746 Sum_probs=67.9
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 236 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
+|||+|||..+++++|+++|+.||.|..+++..+. +.++|+|||+|.+.++|.+|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999886 7789999999999999999999999999999998874
No 87
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=119.56 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..++|||+||++++|+++|+++|+.||.|.+|.|..|.. ++|||||+|++.++|+.|| .|||..|.|+.|.|.+...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 357899999999999999999999999999999998743 5799999999999999999 5999999999999988654
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.9e-11 Score=98.84 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=74.8
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
+...-++-|||+|||++||.++.+|+|.+||.|..|+|-.. ...+|.|||.|++..+|++|++.|+|..+.++.+.|.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 33344567999999999999999999999999999998764 3478999999999999999999999999999999998
Q ss_pred eecchhh
Q 008162 115 HFLRKQE 121 (575)
Q Consensus 115 ~~~~~~~ 121 (575)
.......
T Consensus 91 yyq~~~~ 97 (124)
T KOG0114|consen 91 YYQPEDA 97 (124)
T ss_pred ecCHHHH
Confidence 8876544
No 89
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.8e-13 Score=147.23 Aligned_cols=274 Identities=19% Similarity=0.192 Sum_probs=204.4
Q ss_pred CHHHHHHHHHHhCCCccCCeeEEEEeC---CCCCCC--CCCCCCeEEEcCCCCCcCHH-HHHHHHhhcCCeeEEEEeeC-
Q 008162 3 MLSSAARALDVLNFTPLNNKSIRIMYS---HRDPSI--RKSGTGNIFIKNLDKSIDHK-ALHDTFSSFGNILSCKIATD- 75 (575)
Q Consensus 3 ~~~dA~~a~~~~n~~~i~g~~iri~~s---~~~~~~--r~~~~~~lfV~nLp~~ite~-~L~~~F~~~G~I~~i~v~~~- 75 (575)
.++||..+++.++-.....-.+-+.-+ .+.|.. +........+.++.+....+ ..+..|+.+|.|..|++...
T Consensus 529 ~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g 608 (881)
T KOG0128|consen 529 DPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRG 608 (881)
T ss_pred CchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCcccc
Confidence 356677777776644444333321100 011111 11123346677777766666 57889999999999998873
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhhhhc----cCCceEEEeCCCcCCCHHHHHHH
Q 008162 76 GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK----TKFNNVFVKNLDESTTDEDLKKI 151 (575)
Q Consensus 76 ~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~~----~~~~~v~V~nLp~~~tee~L~~~ 151 (575)
..-....++++.+....+++.|.. ..+..+.++...+.....+......... ....++||+||+..+.+++|...
T Consensus 609 ~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~ 687 (881)
T KOG0128|consen 609 FKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSER 687 (881)
T ss_pred ccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhh
Confidence 222222378999999999999984 4677788888878776665543332221 23356999999999999999999
Q ss_pred hccCCCeeEEEEE-eCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccc
Q 008162 152 FGEYGTITSAVVM-RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 230 (575)
Q Consensus 152 F~~~G~i~~i~i~-~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (575)
|..+|.+..+.+. ...+++-+|+||+.|..++++.+||. ++...+.|
T Consensus 688 ~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~g------------------------------- 735 (881)
T KOG0128|consen 688 FSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFG------------------------------- 735 (881)
T ss_pred cCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhh-------------------------------
Confidence 9999988877766 34678999999999999999999996 44444333
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|.|.|+..|+++++.+|+.+|+++++++.....|+.+|-++|.|.+..+|.+++.+.....+..+.+.|...
T Consensus 736 ---K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 736 ---KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred ---hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 12699999999999999999999999999999999999999999999999999999999988888887777777776
Q ss_pred cc
Q 008162 311 QR 312 (575)
Q Consensus 311 ~~ 312 (575)
++
T Consensus 813 np 814 (881)
T KOG0128|consen 813 NP 814 (881)
T ss_pred CC
Confidence 54
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=5.4e-13 Score=118.67 Aligned_cols=77 Identities=25% Similarity=0.473 Sum_probs=73.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
+..|||+|||+..|+.||..+|+.||+|..|.+++|+ +|+|+||||+||.+..+..-|+..|||..|.|+.|+|...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4579999999999999999999999999999999996 9999999999999999999999999999999999999853
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=2.8e-11 Score=94.55 Aligned_cols=71 Identities=42% Similarity=0.732 Sum_probs=66.7
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
+|+|+|||.+++.++|+++|+.||.|..|++..+. +.++|+|||+|.+.++|.+|++.+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999999876 778999999999999999999999999999988876
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.27 E-value=1.9e-11 Score=115.81 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=69.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|.+| +.+++||||+|.++++|..|+. |+|..|.+++|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 4679999999999999999999999999999999988 4567899999999999999995 9999999999999843
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.27 E-value=1.5e-11 Score=124.50 Aligned_cols=128 Identities=18% Similarity=0.333 Sum_probs=93.5
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCH--HHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK--ESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~--e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.-+|||+||.++++++||...|+.||.|.+|.|+ .++| +|||||.|.+. .++.+||+.|||..+.|+.|.|..+.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4579999999999999999999999999999999 4466 99999999987 78999999999999999999999876
Q ss_pred chh------hhhhhhhccCCceEEEeCCCcC-CCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEE
Q 008162 118 RKQ------ERETVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 177 (575)
Q Consensus 118 ~~~------~~~~~~~~~~~~~v~V~nLp~~-~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV 177 (575)
..- ++.... ......+. ++.. .....|+-+|-..++|..+-+ ..+|+.+ |.|-
T Consensus 87 P~YLeRLkrEReea~-s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPf--sGTGKHk-YSFr 146 (759)
T PLN03213 87 EHYLARLKREWEAAS-STSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPL--SGTGKHK-YSFQ 146 (759)
T ss_pred HHHHHHHHHHHHHhh-cccccccc---ccccCCccceeeEecccccccccccc--CCCccce-eeee
Confidence 432 221111 11111221 2222 334467778888888776544 3456544 4443
No 94
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.27 E-value=3.4e-11 Score=126.53 Aligned_cols=170 Identities=15% Similarity=0.011 Sum_probs=130.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
+..+.+-+++++.+.++.|++++|... .|.+..|..+. .+...|-++|.|....++.+|+.+ |.+.+..+.+.+...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 456678899999999999999999977 78777777774 444589999999999999999965 666666777777654
Q ss_pred cchhhhhhh--------------------------hh-------ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeE-EE
Q 008162 117 LRKQERETV--------------------------AI-------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AV 162 (575)
Q Consensus 117 ~~~~~~~~~--------------------------~~-------~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~-i~ 162 (575)
......... .. ......|||..||..+++.++.++|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 321110000 00 011245999999999999999999999888887 66
Q ss_pred EEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 163 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 163 i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
+-+-.+++.++.|||.|..++++.+|...-+.+.++.+.|.|..+.+
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 66668899999999999999888888876677777777777766543
No 95
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.8e-12 Score=115.40 Aligned_cols=79 Identities=30% Similarity=0.491 Sum_probs=74.3
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
++.-|||+|||+..||.||..+|++||+|.+|.+++| .+|+|+||||++|++..+...|+..|||..|.||.|+|.-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3456999999999999999999999999999999999 789999999999999999999999999999999999987654
No 96
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=3.3e-11 Score=115.43 Aligned_cols=84 Identities=23% Similarity=0.409 Sum_probs=78.0
Q ss_pred cccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeee
Q 008162 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307 (575)
Q Consensus 229 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V 307 (575)
....+-+||||..|++.++|.+|+..|+.||.|..|+|+.|. +|+++|||||+|.++-+...|.+..+|..|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 334566899999999999999999999999999999999995 9999999999999999999999999999999999999
Q ss_pred ehhcc
Q 008162 308 AVAQR 312 (575)
Q Consensus 308 ~~a~~ 312 (575)
.+-..
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 98653
No 97
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.22 E-value=9.5e-10 Score=107.18 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=69.8
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcC--CeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
..++||+||-|++|++||.+....-| .+.+++++.++ +|+|||||+|...+..+..+.++.|..+.|+|..-.|.-.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35899999999999999999998877 46778888776 8999999999999999999999999999999987777655
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
++.
T Consensus 160 NK~ 162 (498)
T KOG4849|consen 160 NKT 162 (498)
T ss_pred chh
Confidence 543
No 98
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=3.4e-11 Score=106.92 Aligned_cols=79 Identities=27% Similarity=0.497 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...+.|||+||+..+++.||...|..||.|.+|+|..+ ..|||||+|++..||+.|+..|+|..|.|..+.|+...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 45678999999999999999999999999999999986 67899999999999999999999999999999998776
Q ss_pred chh
Q 008162 118 RKQ 120 (575)
Q Consensus 118 ~~~ 120 (575)
-..
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 443
No 99
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.22 E-value=4.2e-10 Score=120.15 Aligned_cols=109 Identities=21% Similarity=0.327 Sum_probs=88.4
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
.+++|||+.|++++++.||..+|+.||.|.+|+++.. +|||||+..+..+|.+|+.+|+...+.++.|++.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4578999999999999999999999999999999854 88999999999999999999999999999999999987
Q ss_pred chhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhh
Q 008162 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 256 (575)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~ 256 (575)
+-.+. +++.. ....+=|.-||++--.++|+.+++
T Consensus 495 ~G~ks-e~k~~------------wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 495 KGPKS-EYKDY------------WDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred CCcch-hhhhh------------hhcccCeeEeehHhcCHHHHHhhh
Confidence 65544 33322 223455666777654455666654
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=6.4e-11 Score=92.10 Aligned_cols=70 Identities=44% Similarity=0.763 Sum_probs=65.4
Q ss_pred EecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 239 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 239 V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998876 58889999999999999999999999999999998874
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=1.3e-10 Score=91.27 Aligned_cols=74 Identities=41% Similarity=0.719 Sum_probs=69.7
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 236 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+..+|+|||.|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887777899999999999999999999999999999998864
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=7.2e-11 Score=111.95 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..+|||+||+.++|+++|+++|+.||.|.+|+|..| +..+++|||+|++.++|+.|+ .|+|..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 468999999999999999999999999999999987 456789999999999999999 7999999999999987654
No 103
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=9.5e-11 Score=94.91 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=71.4
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
..-|||+|||+.+|.|+.-++|.+||.|..++|=.+. ..+|.|||.|++..+|.+|++.|+|..++++.|.|-+.+..
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 4579999999999999999999999999999986553 24899999999999999999999999999999999987754
Q ss_pred H
Q 008162 314 E 314 (575)
Q Consensus 314 ~ 314 (575)
+
T Consensus 96 ~ 96 (124)
T KOG0114|consen 96 D 96 (124)
T ss_pred H
Confidence 3
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=8.2e-11 Score=112.79 Aligned_cols=88 Identities=22% Similarity=0.482 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 30 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 30 ~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
+.|+-.-.-.-++|||.-|+++++|..|+..|+.||+|..|.|+.| .+|+++|||||+|++..+...|.+...|.+|+|
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 4455555567789999999999999999999999999999999999 799999999999999999999999999999999
Q ss_pred eeeEEeeec
Q 008162 109 KQVFVGHFL 117 (575)
Q Consensus 109 ~~v~v~~~~ 117 (575)
+.|.|..-.
T Consensus 171 rri~VDvER 179 (335)
T KOG0113|consen 171 RRILVDVER 179 (335)
T ss_pred cEEEEEecc
Confidence 999997643
No 105
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=1.7e-10 Score=90.61 Aligned_cols=73 Identities=36% Similarity=0.668 Sum_probs=68.5
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
+|+|+|||.++++++|+++|+.+|.|..+.+..+..+..+|+|||.|.+.++|..|++.+++..++|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999998766789999999999999999999999999999998875
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=9.6e-11 Score=91.07 Aligned_cols=69 Identities=38% Similarity=0.705 Sum_probs=64.5
Q ss_pred EcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 45 IKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 45 V~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
|+|||.++++++|+++|+.||.|..|++..+. ++.++|||||+|.+.++|..|++.+++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999999999884 5888999999999999999999999999999988876
No 107
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=5.4e-11 Score=100.06 Aligned_cols=85 Identities=28% Similarity=0.388 Sum_probs=75.9
Q ss_pred ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcc
Q 008162 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206 (575)
Q Consensus 128 ~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~-~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~ 206 (575)
...+++|||+||+..++||+|.++|+++|.|..|++--|+ +...-|||||+|.+.++|..|++.+++..++.+.|.+.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3567899999999999999999999999999999887774 566789999999999999999999999999999999988
Q ss_pred cccchh
Q 008162 207 AQKKSE 212 (575)
Q Consensus 207 a~~~~~ 212 (575)
...-.+
T Consensus 113 D~GF~e 118 (153)
T KOG0121|consen 113 DAGFVE 118 (153)
T ss_pred cccchh
Confidence 755433
No 108
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=5.6e-11 Score=99.96 Aligned_cols=79 Identities=19% Similarity=0.385 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.+++|||+||...++|+.|+++|+++|+|..|.+-.|. +...-|||||+|.+.++|+.|++.++++.++++.|.+.+..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 47899999999999999999999999999999888884 45578999999999999999999999999999999997754
No 109
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=3.8e-11 Score=109.16 Aligned_cols=79 Identities=33% Similarity=0.574 Sum_probs=74.9
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
..+.|.|.||-+.++-++|..+|++||.|-+|.|.+| -++.++|||||.|.+..+|++|+++|+|..++|+.|.|..|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4578999999999999999999999999999999999 578999999999999999999999999999999999998874
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.7e-11 Score=112.21 Aligned_cols=82 Identities=29% Similarity=0.512 Sum_probs=77.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||++|.++|++.-|...|-+||.|.+|.+..| ++++-|||+||+|.-.|||..|++.||+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4569999999999999999999999999999999988 478899999999999999999999999999999999999998
Q ss_pred cHH
Q 008162 312 RKE 314 (575)
Q Consensus 312 ~~~ 314 (575)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.13 E-value=1.8e-10 Score=120.21 Aligned_cols=85 Identities=31% Similarity=0.550 Sum_probs=80.0
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
+.|||+|||+++++++|.++|+..|.|.+++++.| ++|+.+||||++|.+.++|..|++.|||..+.|++++|.+....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999 79999999999999999999999999999999999999998776
Q ss_pred hhhhhh
Q 008162 120 QERETV 125 (575)
Q Consensus 120 ~~~~~~ 125 (575)
..+...
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 655443
No 112
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=121.88 Aligned_cols=82 Identities=28% Similarity=0.489 Sum_probs=77.6
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+++||+|+|+++++++|.++|+..|.|.++++..|+ +|+++||||++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999886 8999999999999999999999999999999999999999765
Q ss_pred HHH
Q 008162 314 EER 316 (575)
Q Consensus 314 ~~r 316 (575)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 444
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=2.4e-10 Score=85.59 Aligned_cols=56 Identities=36% Similarity=0.711 Sum_probs=51.3
Q ss_pred HHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 251 l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
|+++|++||+|.++.+..+. +++|||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998773 589999999999999999999999999999999875
No 114
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1e-10 Score=99.14 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=77.7
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
...+..|||.++-.+.|+++|.+.|..||.|..+.+-.|. +|..|||++|+|.+.++|+.|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 4567889999999999999999999999999999998775 899999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+--+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8644
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=3.7e-10 Score=88.73 Aligned_cols=61 Identities=25% Similarity=0.530 Sum_probs=54.0
Q ss_pred HHHHHHHhh----hcCCeeEEE-EeeCC-C--CCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 248 DEKLKELFS----EFGTITSCK-VMRDP-S--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 248 ~~~l~~~F~----~~G~v~~~~-i~~~~-~--g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
+++|+++|+ .||.|.++. |..+. + +.++|||||.|.+.++|.+|+..|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 55543 4 8899999999999999999999999999999999863
No 116
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.9e-10 Score=97.55 Aligned_cols=79 Identities=29% Similarity=0.513 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.-..|||.++...++|++|.+.|..||.|..|.+..| .+|..||||+|+|+|.+.|.+|++.+||..+-|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 4456999999999999999999999999999999998 799999999999999999999999999999999999998864
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.08 E-value=1.4e-10 Score=108.80 Aligned_cols=169 Identities=27% Similarity=0.439 Sum_probs=132.1
Q ss_pred EEEeCCCcCCCHHH-H--HHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 134 VFVKNLDESTTDED-L--KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 134 v~V~nLp~~~tee~-L--~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
.+++++-..+..+- | ...|+.|-......+.++..+.-++++|+.|+....-.++-..-+++++....++....+..
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45666655555554 3 66788887777778888888888999999999887777777666777777776666555443
Q ss_pred hhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHH
Q 008162 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEAS 289 (575)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~ 289 (575)
..... ..-+.....||++.|..+++++.|-..|.+|-.....++++|. +|+++||+||.|.+.+++.
T Consensus 179 edPsl------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 179 EDPSL------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred CCccc------------ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 22110 0112234589999999999999999999999999999999885 8999999999999999999
Q ss_pred HHHHHhCCceecceeeeeehhccHH
Q 008162 290 RALAEMNGKMIVSKPLYVAVAQRKE 314 (575)
Q Consensus 290 ~A~~~lng~~i~g~~l~V~~a~~~~ 314 (575)
.|+.+|+|+.++.++|.+.-..-++
T Consensus 247 rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999887655444
No 118
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=4.3e-10 Score=116.66 Aligned_cols=150 Identities=21% Similarity=0.250 Sum_probs=100.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 008162 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ 110 (575)
Q Consensus 31 ~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~ 110 (575)
++|+......++|+|-|||.+|++++|+.+|+.||+|.+|..... .+|.+||+|.+..+|+.|++.||+..+.|+.
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 567777788999999999999999999999999999999765543 7789999999999999999999999999988
Q ss_pred eEEeeecchhhhhhh------------hh--ccC--CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCccee
Q 008162 111 VFVGHFLRKQERETV------------AI--KTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 174 (575)
Q Consensus 111 v~v~~~~~~~~~~~~------------~~--~~~--~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~ 174 (575)
+......++..-... .. ... ...++ +.|++..+..-+..+|.-+|.+.. .. ++.-+.-
T Consensus 142 ~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq 215 (549)
T KOG4660|consen 142 IKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQ 215 (549)
T ss_pred hcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cc----ccchhhh
Confidence 873222111100000 00 000 11222 237777777666666666666554 21 1222224
Q ss_pred EEEEeCCHHHHHHHHH
Q 008162 175 GFVNFENADDAAKAVE 190 (575)
Q Consensus 175 afV~F~~~e~A~~Ai~ 190 (575)
-|++|.+..++..+..
T Consensus 216 ~~~~~~~~~s~a~~~~ 231 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEP 231 (549)
T ss_pred hhhhhccccchhhccc
Confidence 4666666666644443
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.04 E-value=2.6e-10 Score=107.09 Aligned_cols=168 Identities=22% Similarity=0.333 Sum_probs=130.6
Q ss_pred EEEcCCCCCcCHHH-H--HHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 43 IFIKNLDKSIDHKA-L--HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 43 lfV~nLp~~ite~~-L--~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
.|+.++-.++..+- | ...|+.+-.....+++.+..+...+++|+.|.....-.++-..-++.++.-..|.+......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 55666655554444 3 66777776777788888878889999999998877666665555566665555666555544
Q ss_pred hhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeC
Q 008162 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198 (575)
Q Consensus 120 ~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~ 198 (575)
.+.....-..+..+||.+.|.-+++++-|...|.+|-.-...++++| ++|+++||+||.|.++.++..|++.|+|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 44333333456678999999999999999999999998888999988 79999999999999999999999999999999
Q ss_pred CeeEEEcccccc
Q 008162 199 DREWYVGKAQKK 210 (575)
Q Consensus 199 g~~l~v~~a~~~ 210 (575)
.+.|......-+
T Consensus 259 srpiklRkS~wk 270 (290)
T KOG0226|consen 259 SRPIKLRKSEWK 270 (290)
T ss_pred cchhHhhhhhHH
Confidence 998887655443
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=115.24 Aligned_cols=178 Identities=14% Similarity=0.061 Sum_probs=125.9
Q ss_pred EEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCc-ceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchh
Q 008162 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 212 (575)
Q Consensus 134 v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~s-kg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~ 212 (575)
+-+++.+.+.++.|++++|... .|.+..+..+.-+.+ +|-++|.|....++.+|+.. |...+-.|.+.+........
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 5567888899999999998654 355555555543443 78999999999999999964 55555666666655433211
Q ss_pred HHHHH----h------hhH-----------HhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeE-EEEeeCC
Q 008162 213 REQEL----K------GQF-----------EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDP 270 (575)
Q Consensus 213 ~~~~~----~------~~~-----------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-~~i~~~~ 270 (575)
.-..- . ... ....+-......+.+|||..||..+++.++.++|..--.|++ |.|.+.+
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 11000 0 000 000011122345678999999999999999999987767766 7888888
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 271 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 271 ~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+++.++.|||.|..++++.+|...-+...++-+-|.|.-...+
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 9999999999999999999999877777777788888755443
No 121
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=9.4e-11 Score=107.53 Aligned_cols=138 Identities=25% Similarity=0.369 Sum_probs=119.3
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
.++|||.|+...++++-|.|+|-..|.|..+.|..+.++..| ||||.|+++-+..-|++-+||..+.++.+.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~------ 81 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR------ 81 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc------
Confidence 468999999999999999999999999999999988888888 9999999999999999999999888877665
Q ss_pred hhHHHHHhhhHHhhhhhccccccceeEEEec----CCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHH
Q 008162 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKN----LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 286 (575)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----l~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~ 286 (575)
+++.++ |+..++++.+.+.|+.-|.+..+++..+.+|..+.++|+++-...
T Consensus 82 -------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 82 -------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred -------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 344555 677889999999999999999999999888999999999987776
Q ss_pred HHHHHHHHhCCcee
Q 008162 287 EASRALAEMNGKMI 300 (575)
Q Consensus 287 ~A~~A~~~lng~~i 300 (575)
..-.++....+...
T Consensus 137 ~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 137 AVPFALDLYQGLEL 150 (267)
T ss_pred cCcHHhhhhcccCc
Confidence 66666665555443
No 122
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.1e-10 Score=103.24 Aligned_cols=81 Identities=31% Similarity=0.545 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
.++|||++|...+|++-|...|-.||.|..|.+..| ++.+.+|||||+|+-.|||.+||..||+..+.||.|.|..+.+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 468999999999999999999999999999999999 8899999999999999999999999999999999999998876
Q ss_pred hh
Q 008162 119 KQ 120 (575)
Q Consensus 119 ~~ 120 (575)
..
T Consensus 90 ~k 91 (298)
T KOG0111|consen 90 EK 91 (298)
T ss_pred cc
Confidence 43
No 123
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.99 E-value=2e-09 Score=80.57 Aligned_cols=56 Identities=39% Similarity=0.603 Sum_probs=50.3
Q ss_pred HHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 57 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 57 L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
|+++|++||+|.+|++..+. +++|||+|.+.++|..|++.|||..+.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997652 589999999999999999999999999999999764
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=98.98 E-value=2.1e-09 Score=84.48 Aligned_cols=60 Identities=30% Similarity=0.527 Sum_probs=53.4
Q ss_pred HHHHHHHhc----cCCCeeEEE-EEeC-CC--CCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEE
Q 008162 145 DEDLKKIFG----EYGTITSAV-VMRD-GD--GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204 (575)
Q Consensus 145 ee~L~~~F~----~~G~i~~i~-i~~d-~~--g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v 204 (575)
+++|+++|+ +||.|.++. +..+ .+ ++++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 5544 45 899999999999999999999999999999999876
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.2e-08 Score=105.28 Aligned_cols=153 Identities=24% Similarity=0.339 Sum_probs=112.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEe-eC---CCCCccc---EEEEEeCCHHHHHHHHHHhcC----Cc-
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA-TD---GSGQSKG---FGFVQFENKESAQNAIDKLNG----ML- 105 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~-~~---~~g~skG---~afV~F~t~e~A~~Ai~~lng----~~- 105 (575)
+-++.|||++||.+++|+.|...|..||.+. |... +. ..-..+| |+|+.|+++.+...-+..... ..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 3467899999999999999999999999874 2222 11 1112455 999999999998877765422 11
Q ss_pred ------cCCeeeEEeeecchhh-h--hhhhhccCCceEEEeCCCcCCCHHHHHHHhc-cCCCeeEEEEEeC-CCCCccee
Q 008162 106 ------INDKQVFVGHFLRKQE-R--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFG-EYGTITSAVVMRD-GDGKSKCF 174 (575)
Q Consensus 106 ------i~g~~v~v~~~~~~~~-~--~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~-~~G~i~~i~i~~d-~~g~skg~ 174 (575)
+.++.|.|.+..-... - .....-...++|||++||.-++.++|..+|+ -||.|.-+-|-.| +-+-.+|.
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 2334344443322111 0 1111124568899999999999999999999 8999999999988 56779999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 008162 175 GFVNFENADDAAKAVEA 191 (575)
Q Consensus 175 afV~F~~~e~A~~Ai~~ 191 (575)
|=|+|.+..+..+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999964
No 126
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=3.7e-10 Score=103.67 Aligned_cols=135 Identities=25% Similarity=0.416 Sum_probs=115.7
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
.++|||.||-..+||+-|.++|-..|+|..|+|..+.+++.| ||||.|.++-+..-|++.+||..+.+..+.|.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~----- 82 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT----- 82 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc-----
Confidence 468999999999999999999999999999999998888888 99999999999999999999988877666553
Q ss_pred hhhhhhhhccCCceEEEeC----CCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCC
Q 008162 120 QERETVAIKTKFNNVFVKN----LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194 (575)
Q Consensus 120 ~~~~~~~~~~~~~~v~V~n----Lp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~ 194 (575)
++-++ |...++++.+.+.|+..|.+..+.+.++.+|+++.++|+.+-...+.-.++....+
T Consensus 83 --------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 83 --------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred --------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 33344 67788999999999999999999999998899999999988766655566654333
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=8.9e-09 Score=101.00 Aligned_cols=81 Identities=27% Similarity=0.442 Sum_probs=71.5
Q ss_pred hccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHh-CCceecceee
Q 008162 227 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPL 305 (575)
Q Consensus 227 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~l-ng~~i~g~~l 305 (575)
+...+....+|||++|-+.+++.+|+++|.+||+|.++.++.. ++||||+|.+.++|+.|..++ |...|+|.+|
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3344556679999999999999999999999999999999887 779999999999999998875 5566799999
Q ss_pred eeehhcc
Q 008162 306 YVAVAQR 312 (575)
Q Consensus 306 ~V~~a~~ 312 (575)
.|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999887
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.9e-08 Score=102.42 Aligned_cols=162 Identities=17% Similarity=0.311 Sum_probs=111.5
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC---CCCCcce---eEEEEeCCHHHHHHHHHHHCCCeeCCeeEE
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD---GDGKSKC---FGFVNFENADDAAKAVEALNGKKFDDREWY 203 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d---~~g~skg---~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~ 203 (575)
-.+.|||++||++++|+.|...|..||.+..---.+. ..-..+| |+|+.|+++.++..-+.++.. +...++
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 3467999999999999999999999997542111111 1123566 999999999998887776543 333333
Q ss_pred EcccccchhHH-HHHh----hhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhh-hcCCeeEEEEeeC-CCCCCCc
Q 008162 204 VGKAQKKSERE-QELK----GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS-EFGTITSCKVMRD-PSGISKG 276 (575)
Q Consensus 204 v~~a~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~~~i~~~-~~g~skg 276 (575)
.......-... .... ............-....||||++||.-++.++|-.+|+ -||.|..+-|-.| +-...+|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 32222111000 0000 00000000111223457999999999999999999998 7999999999988 5677899
Q ss_pred eEEEEeCCHHHHHHHHHH
Q 008162 277 SGFVAFSTPEEASRALAE 294 (575)
Q Consensus 277 ~afV~f~s~~~A~~A~~~ 294 (575)
-|-|+|.+..+-.+||..
T Consensus 415 aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceeeecccHHHHHHHhh
Confidence 999999999999999973
No 129
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.80 E-value=5.2e-09 Score=104.55 Aligned_cols=172 Identities=22% Similarity=0.267 Sum_probs=135.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
....++|++++...+.+.++..++..+|.+..+.+... ....++|+++|+|++.+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 56788999999999999999999999998877777765 57789999999999999999999754444555555444333
Q ss_pred cchhhhh-----hhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHH
Q 008162 117 LRKQERE-----TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 190 (575)
Q Consensus 117 ~~~~~~~-----~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~ 190 (575)
.....+. ........+-.+|++|+.++++++|++.|..+|.|..+.+..+ .++.++||+||.|.+..++..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2222110 0011122334559999999999999999999999999999877 689999999999999999999997
Q ss_pred HHCCCeeCCeeEEEcccccc
Q 008162 191 ALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 191 ~l~~~~~~g~~l~v~~a~~~ 210 (575)
. ....+.++.+.+......
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred c-ccCcccCcccccccCCCC
Confidence 6 788888888888776544
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.78 E-value=1.6e-08 Score=92.74 Aligned_cols=81 Identities=21% Similarity=0.454 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhc-CCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSF-GNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~-G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
..+-++|..+|....+..|..+|..| |.|..+++.++ .+|+|||||||+|++.+.|+-|-+.||++++.++-+.|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 35569999999999999999999999 68888888777 79999999999999999999999999999999998888765
Q ss_pred cch
Q 008162 117 LRK 119 (575)
Q Consensus 117 ~~~ 119 (575)
...
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 443
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=5.5e-10 Score=120.81 Aligned_cols=179 Identities=21% Similarity=0.232 Sum_probs=136.9
Q ss_pred CCHHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCC--------CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEe
Q 008162 2 FMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRK--------SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73 (575)
Q Consensus 2 ~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~--------~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~ 73 (575)
.+..+|+.|.. .+..-+.++...+--+...++... +...++||+||+..+.+.||.+.|..+|.+..+.+.
T Consensus 622 s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~ 700 (881)
T KOG0128|consen 622 SKHGSAESATV-PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV 700 (881)
T ss_pred ccccchhhccc-ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH
Confidence 34556666665 556666666666544332222111 234569999999999999999999999988777766
Q ss_pred eC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHh
Q 008162 74 TD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 152 (575)
Q Consensus 74 ~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F 152 (575)
.. ..+.-+|+|||.|.+++++.+|+.-...+.+ | ...|+|.|.|...|+++++.+|
T Consensus 701 ~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g----------------------K~~v~i~g~pf~gt~e~~k~l~ 757 (881)
T KOG0128|consen 701 IHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G----------------------KISVAISGPPFQGTKEELKSLA 757 (881)
T ss_pred HHhhccccccceeeEeecCCchhhhhhhhhhhhh-h----------------------hhhhheeCCCCCCchHHHHhhc
Confidence 22 4677899999999999999999975443332 2 2359999999999999999999
Q ss_pred ccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEE
Q 008162 153 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204 (575)
Q Consensus 153 ~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v 204 (575)
+.+|.+.+..++..+.|+.+|.+||.|.++.++.+++.......+.-+.+.+
T Consensus 758 ~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v 809 (881)
T KOG0128|consen 758 SKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEV 809 (881)
T ss_pred cccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccc
Confidence 9999999999988899999999999999999999998766554444333333
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=9.9e-09 Score=100.51 Aligned_cols=81 Identities=32% Similarity=0.589 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
-+.+-|||--|.+-++.+||.-+|+.||.|.+|.|+.| .+|.+..||||+|++.+++++|.-+|.+.+|+++.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34567999999999999999999999999999999999 89999999999999999999999999999999999999887
Q ss_pred cc
Q 008162 117 LR 118 (575)
Q Consensus 117 ~~ 118 (575)
.+
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 133
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-08 Score=99.09 Aligned_cols=86 Identities=30% Similarity=0.459 Sum_probs=79.6
Q ss_pred ccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 230 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
...+...|||.-|.+-+|+++|.-+|+.||.|.+|.|++|. +|.|-.||||+|.+.+++.+|.-.|.+..|+.++|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 35567789999999999999999999999999999999995 89999999999999999999999999999999999999
Q ss_pred hhccHHH
Q 008162 309 VAQRKEE 315 (575)
Q Consensus 309 ~a~~~~~ 315 (575)
|+++-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9876543
No 134
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.70 E-value=3.3e-08 Score=90.68 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=72.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhc-CCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEF-GTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
.-+||+.++.-+.+.+|..+|.+| |.|+.+++.++ ++|.|||||||+|.+.+.|.-|-+.||+..+.++.|.|.+-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 469999999999999999999998 67777788676 4999999999999999999999999999999999999998776
Q ss_pred H
Q 008162 313 K 313 (575)
Q Consensus 313 ~ 313 (575)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 6
No 135
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.66 E-value=1.6e-08 Score=101.17 Aligned_cols=175 Identities=23% Similarity=0.253 Sum_probs=134.5
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEe-CCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~-d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
..+.+|++++.+.+.+.++..++..+|.+....... .....++|++++.|...+.+..|+.....+...++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 457899999999999999999999999776666655 3678899999999999999999996443345555554433332
Q ss_pred cchhHHHHHhhhHHhhhhhccccccceeEE-EecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHH
Q 008162 209 KKSEREQELKGQFEQAMKETVDKFQGLNLY-IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 286 (575)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~ 286 (575)
....+. .............++| |++++..+++++|+.+|..+|.|..+++..++ .|.++||++|+|.+..
T Consensus 167 ~~~~~~--------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRP--------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccccc--------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 211000 0000111222334555 99999999999999999999999999998775 8899999999999999
Q ss_pred HHHHHHHHhCCceecceeeeeehhccH
Q 008162 287 EASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 287 ~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
.+..++.. ....+.+.++.+......
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999987 888999999999877654
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.63 E-value=5.5e-08 Score=100.52 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=73.2
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
...+.+|||.+|...+...+|+.+|++||+|.-.+|+.+. +--.++|+||++.+.++|.+||+.||...++|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3457889999999999999999999999999999999885 333589999999999999999999999999999999987
Q ss_pred hc
Q 008162 310 AQ 311 (575)
Q Consensus 310 a~ 311 (575)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 64
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=9.6e-08 Score=92.08 Aligned_cols=80 Identities=30% Similarity=0.503 Sum_probs=75.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
.+.|+|.||++.|+++||+++|..||.+..+-|.+++.|.|.|.|-|.|...+||..|++.+||..++|+.+.+.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999998876543
No 138
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.60 E-value=1.1e-07 Score=98.41 Aligned_cols=82 Identities=21% Similarity=0.423 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
|..-.+||||.+|...+.-.||+++|++||.|+..||+++ .....+.|+||++.|.++|.+||+.|+-+.|.|+.|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 3345678999999999999999999999999999999998 444578899999999999999999999999999999998
Q ss_pred eec
Q 008162 115 HFL 117 (575)
Q Consensus 115 ~~~ 117 (575)
...
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 765
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=2e-07 Score=91.68 Aligned_cols=75 Identities=27% Similarity=0.453 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL-NGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l-ng~~i~g~~v~v~~~~ 117 (575)
...+|||++|-..+++.+|+++|.+||.|.+|.+.. .++.|||+|.|.++|+.|.++. |...|+|++|+|.|..
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 356899999999999999999999999999999987 5779999999999999999876 5567899999999877
Q ss_pred c
Q 008162 118 R 118 (575)
Q Consensus 118 ~ 118 (575)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 6
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=4.9e-08 Score=106.41 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=134.3
Q ss_pred ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 128 ~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
....++||++||+..+++.+|+..|..+|.|..|.|....-+.-..|+||.|.+...+-+|...+.+..|....+.....
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34557899999999999999999999999999999877655666679999999999999998888888776655554444
Q ss_pred ccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHH
Q 008162 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287 (575)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~ 287 (575)
..+ ....+.+++++|..|+....|...|..||.|..|.+-.. .-|++|.|.+...
T Consensus 449 ~~k--------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~ 503 (975)
T KOG0112|consen 449 QPK--------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPA 503 (975)
T ss_pred ccc--------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCcc
Confidence 321 223457999999999999999999999999999877544 5699999999999
Q ss_pred HHHHHHHhCCceecc--eeeeeehhccH
Q 008162 288 ASRALAEMNGKMIVS--KPLYVAVAQRK 313 (575)
Q Consensus 288 A~~A~~~lng~~i~g--~~l~V~~a~~~ 313 (575)
|+.|+..|.|..++| ++|.|.|+..-
T Consensus 504 aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 504 AQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred chhhHHHHhcCcCCCCCcccccccccCC
Confidence 999999999999985 67888887643
No 141
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=8.4e-08 Score=104.64 Aligned_cols=180 Identities=18% Similarity=0.250 Sum_probs=139.5
Q ss_pred CCccCCeeEE-EEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHH
Q 008162 16 FTPLNNKSIR-IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94 (575)
Q Consensus 16 ~~~i~g~~ir-i~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A 94 (575)
....++++++ ++|.. +.-....+.+||++||+..+++.+|+..|..+|.|.+|.|-+-..+.-.-||||.|.+...+
T Consensus 349 ~~~~r~r~~rk~t~v~--~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmt 426 (975)
T KOG0112|consen 349 GLPVRIRPFRKLTHVL--KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMT 426 (975)
T ss_pred CCCcCCCCcccccccc--cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccC
Confidence 3344555554 33432 22334457889999999999999999999999999999887765566666999999999999
Q ss_pred HHHHHHhcCCccCCeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCccee
Q 008162 95 QNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 174 (575)
Q Consensus 95 ~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~ 174 (575)
-.|...+.+..|....+.+..... .....+.+++++|..++....|...|..||.|..|.+-. | .-|
T Consensus 427 p~ak~e~s~~~I~~g~~r~glG~~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---g--q~y 493 (975)
T KOG0112|consen 427 PSAKFEESGPLIGNGTHRIGLGQP--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---G--QPY 493 (975)
T ss_pred cccchhhcCCccccCccccccccc--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---C--Ccc
Confidence 999988888776544444433221 234567899999999999999999999999999866542 2 449
Q ss_pred EEEEeCCHHHHHHHHHHHCCCeeCC--eeEEEcccccc
Q 008162 175 GFVNFENADDAAKAVEALNGKKFDD--REWYVGKAQKK 210 (575)
Q Consensus 175 afV~F~~~e~A~~Ai~~l~~~~~~g--~~l~v~~a~~~ 210 (575)
++|.|++...+..|++.+.+..+++ +.+.|.++...
T Consensus 494 ayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 494 AYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred eeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 9999999999999999999999875 56777776543
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.45 E-value=6e-07 Score=86.61 Aligned_cols=81 Identities=21% Similarity=0.408 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.+...|.|.|||+.|+++||+++|..||.+..+-+-.+++|.+.|.|-|.|...+||..|++.+|+..++|+.+.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999998887654
Q ss_pred c
Q 008162 118 R 118 (575)
Q Consensus 118 ~ 118 (575)
.
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.29 E-value=1.1e-06 Score=93.66 Aligned_cols=81 Identities=32% Similarity=0.525 Sum_probs=74.1
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC----CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~----~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~ 306 (575)
+...++|||+||+..++++.|...|.+||.|.+++|+.-+ ....+.|+||.|-+..||.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999998543 455689999999999999999999999999999999
Q ss_pred eehhc
Q 008162 307 VAVAQ 311 (575)
Q Consensus 307 V~~a~ 311 (575)
+.|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99976
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=5.6e-07 Score=93.92 Aligned_cols=174 Identities=18% Similarity=0.249 Sum_probs=115.6
Q ss_pred ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 128 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 128 ~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
.....+|+|-|||..+++++|.++|+.||+|..|..-. ..+|..||+|.|..+|+.|+++|++.++.|+++.....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 45668899999999999999999999999999865433 34678999999999999999999999999998882222
Q ss_pred ccchhHH---HHHhhhHHhhhhhc-cccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeC
Q 008162 208 QKKSERE---QELKGQFEQAMKET-VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283 (575)
Q Consensus 208 ~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~ 283 (575)
......- ...-..+....... ......-.+++ .|+...+..-++..|+.+|.+.. +- ++..+-.-|+.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq~~~~~~ 221 (549)
T KOG4660|consen 148 ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQRFVEFA 221 (549)
T ss_pred ccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc----ccchhhhhhhhhc
Confidence 1111100 00111111111111 11111122333 38888888777777888887766 32 2222336788888
Q ss_pred CHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 284 TPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 284 s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
+..++..+...+ |..+.++...+.+...
T Consensus 222 ~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccchhhcccCC-ceecCCCCceEEecCC
Confidence 888886666634 6677777766666554
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.22 E-value=8.5e-06 Score=67.44 Aligned_cols=76 Identities=26% Similarity=0.367 Sum_probs=63.7
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccC--CCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeC----CeeEEE
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEY--GTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD----DREWYV 204 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~--G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~----g~~l~v 204 (575)
++|.|+|+|...|.++|.+++... |...-+.+..| .++.+.|||||+|.++++|.+-.+.++|+.+. .+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988654 66777788878 78889999999999999999999999998875 334444
Q ss_pred ccc
Q 008162 205 GKA 207 (575)
Q Consensus 205 ~~a 207 (575)
.+|
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 444
No 146
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.21 E-value=0.00014 Score=71.82 Aligned_cols=77 Identities=22% Similarity=0.249 Sum_probs=63.4
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccCCC--eeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEYGT--ITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~G~--i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
-.+||+||-|.+|++||.+.+...|. +.++++..+ .+|.+||||+|...+..+.++-++-|-.+.+.|..-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 46999999999999999999887773 556666666 579999999999999998999998888888888765554443
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.18 E-value=1.2e-05 Score=66.47 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=67.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhh--cCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceec----ceeeee
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSE--FGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV----SKPLYV 307 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~--~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~----g~~l~V 307 (575)
++|.|+|||...|.++|.+++.. .|..+.+.+..|- ++...|||||.|.++++|.+..+.++|+.+. .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999854 3567777887774 6778999999999999999999999999885 567778
Q ss_pred ehhccH
Q 008162 308 AVAQRK 313 (575)
Q Consensus 308 ~~a~~~ 313 (575)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887644
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.15 E-value=1e-05 Score=63.70 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=47.9
Q ss_pred eEEEcCCCCCcCHHHHHH----HHhhcC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 42 NIFIKNLDKSIDHKALHD----TFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~----~F~~~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
.|+|.|||.+.+-..|+. ++..+| .|.+| +.+.|+|.|.+.+.|.+|.++|+|..+.|++|.|.+.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 589999999999877655 555676 77766 3468999999999999999999999999999999887
Q ss_pred cchhh
Q 008162 117 LRKQE 121 (575)
Q Consensus 117 ~~~~~ 121 (575)
....+
T Consensus 75 ~~~r~ 79 (90)
T PF11608_consen 75 PKNRE 79 (90)
T ss_dssp --S--
T ss_pred CCccc
Confidence 55443
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.15 E-value=4.4e-06 Score=87.11 Aligned_cols=75 Identities=33% Similarity=0.532 Sum_probs=65.0
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.|||+|||.+++.++|+++|+.||.|....|.... .+.+..||||.|++.+++..||+. +-..++++++.|..-.
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 39999999999999999999999999888877653 455559999999999999999987 4778899999996544
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.14 E-value=3.2e-06 Score=88.15 Aligned_cols=78 Identities=26% Similarity=0.433 Sum_probs=67.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...+|||+|||.+++.++|+++|..||.|+...|.... .+++.+||||+|.+.+++..|+.+ +-..+++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34559999999999999999999999999999887643 555569999999999999999984 4778899999999654
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.12 E-value=3.1e-06 Score=81.97 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=72.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
.....+||+|+++.+|.+++...|+.||.|..+.|..|. .|.+|||+||.|.+.+.+.+++. |+|..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345689999999999999999999999999999998887 56799999999999999999999 9999999999999976
Q ss_pred c
Q 008162 311 Q 311 (575)
Q Consensus 311 ~ 311 (575)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 5
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.00 E-value=3e-05 Score=61.11 Aligned_cols=70 Identities=26% Similarity=0.438 Sum_probs=48.7
Q ss_pred eeEEEecCCCCCCHH----HHHHHhhhcC-CeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 235 LNLYIKNLGDSIDDE----KLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~----~l~~~F~~~G-~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
+.|||.|||.+.+.. .|+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 469999999999865 5556666776 677763 46899999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8543
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.99 E-value=9.1e-06 Score=78.72 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
........+||+|++..+|.+++..+|+.||.|..+.+.+|. .|..|||+||.|.+.+.+..|+. ||+..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 344567789999999999999999999999999999999984 55699999999999999999997 9999999999999
Q ss_pred eeecch
Q 008162 114 GHFLRK 119 (575)
Q Consensus 114 ~~~~~~ 119 (575)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 876543
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.83 E-value=5.2e-06 Score=83.53 Aligned_cols=155 Identities=24% Similarity=0.423 Sum_probs=120.4
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCe-eCCeeEEEcccccc
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-FDDREWYVGKAQKK 210 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~-~~g~~l~v~~a~~~ 210 (575)
+.+|++||.+.++-.+|..+|.....-.+-.++. ..||+||.+.+..-|.+|++.++++. +.|+++.+...-.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 3589999999999999999998652211111221 25799999999999999999998754 67888777665444
Q ss_pred hhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEe-eCCCCCCCceEEEEeCCHHHHH
Q 008162 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM-RDPSGISKGSGFVAFSTPEEAS 289 (575)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~-~~~~g~skg~afV~f~s~~~A~ 289 (575)
..+. +.+-|.|++....++.|..+...||+++.|... .+.. .-..-|+|.+.+.++
T Consensus 77 kqrs--------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~~ 133 (584)
T KOG2193|consen 77 KQRS--------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQHR 133 (584)
T ss_pred HHHh--------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHHH
Confidence 3221 248899999999999999999999999999754 3321 223457899999999
Q ss_pred HHHHHhCCceecceeeeeehhccHH
Q 008162 290 RALAEMNGKMIVSKPLYVAVAQRKE 314 (575)
Q Consensus 290 ~A~~~lng~~i~g~~l~V~~a~~~~ 314 (575)
.|+..++|..+....+.|.+.....
T Consensus 134 ~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 134 QAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HHHHhhcchHhhhhhhhcccCchhh
Confidence 9999999999999999999876543
No 155
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.83 E-value=2.9e-05 Score=83.07 Aligned_cols=78 Identities=29% Similarity=0.489 Sum_probs=71.0
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCC----CCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcc
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD----GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~----g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~ 206 (575)
.+|+||+||+..++++.|...|+.||.|-+++|+..++ .+.+.||||.|-+..||++|++.|+|..+.+..+...|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 47899999999999999999999999999999997643 45678999999999999999999999999999998888
Q ss_pred cc
Q 008162 207 AQ 208 (575)
Q Consensus 207 a~ 208 (575)
+.
T Consensus 254 gk 255 (877)
T KOG0151|consen 254 GK 255 (877)
T ss_pred cc
Confidence 74
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.82 E-value=2e-05 Score=78.86 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=115.6
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG----SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~----~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.+-|.|.||..++|.+.++.+|..+|.|.++.|+.+. .......|||.|.+...+..|- .|.++.+-|+.++|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 4479999999999999999999999999999998752 3445668999999999988776 6778888888888876
Q ss_pred ecchhhhhhhh--------------------------------------------------hccCCceEEEeCCCcCCCH
Q 008162 116 FLRKQERETVA--------------------------------------------------IKTKFNNVFVKNLDESTTD 145 (575)
Q Consensus 116 ~~~~~~~~~~~--------------------------------------------------~~~~~~~v~V~nLp~~~te 145 (575)
+.......... ...-.++++|.+|+..|..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 54322111000 0001145899999999999
Q ss_pred HHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeC
Q 008162 146 EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198 (575)
Q Consensus 146 e~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~ 198 (575)
.++.++|..+|.|....+- .|...-+|.+.|....+...|++ ++|..+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~a---sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTA---SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhh---ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999987654432 23445577899998888888885 4666655
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.79 E-value=5.8e-05 Score=63.93 Aligned_cols=77 Identities=34% Similarity=0.550 Sum_probs=48.1
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhC-----Cceecceeeeee
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN-----GKMIVSKPLYVA 308 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~ln-----g~~i~g~~l~V~ 308 (575)
++.|+|.+++..++.++|++.|+.||.|..|.+... -..|+|.|.+.++|.+|+..+. +..+.+..+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 467999999999999999999999999999998765 3479999999999999999874 345677777777
Q ss_pred hhccHHH
Q 008162 309 VAQRKEE 315 (575)
Q Consensus 309 ~a~~~~~ 315 (575)
+-.-.++
T Consensus 76 vLeGeeE 82 (105)
T PF08777_consen 76 VLEGEEE 82 (105)
T ss_dssp ---HHHH
T ss_pred ECCCHHH
Confidence 6554443
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.75 E-value=6.9e-06 Score=82.68 Aligned_cols=155 Identities=21% Similarity=0.363 Sum_probs=121.9
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-ccCCeeeEEeeecch
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM-LINDKQVFVGHFLRK 119 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~-~i~g~~v~v~~~~~~ 119 (575)
+.++|+||...++-+||...|...-.-.+-.++. ..||+||.+.+..-|.+|++.++|. .+.|+.+.+.....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4689999999999999999997542111111111 4579999999999999999999995 588999999888776
Q ss_pred hhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCC
Q 008162 120 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199 (575)
Q Consensus 120 ~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g 199 (575)
..+. +.+-|.|+|....++-|..+...||.+.++....... -.-..-|+|.+.+.+..|+..+++..+..
T Consensus 77 kqrs--------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 77 KQRS--------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred HHHh--------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 6554 3478999999999999999999999999887642211 12223467888999999999999999999
Q ss_pred eeEEEcccccc
Q 008162 200 REWYVGKAQKK 210 (575)
Q Consensus 200 ~~l~v~~a~~~ 210 (575)
..+.+.+....
T Consensus 147 ~~~k~~YiPde 157 (584)
T KOG2193|consen 147 QHLKVGYIPDE 157 (584)
T ss_pred hhhhcccCchh
Confidence 88888877543
No 159
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.58 E-value=2e-05 Score=78.74 Aligned_cols=172 Identities=18% Similarity=0.180 Sum_probs=120.2
Q ss_pred eEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCC-C---CCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-D---GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 133 ~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~-~---g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
.|.|.||.++++.+++..+|...|+|..+.++... + ......|||.|.|..++.-|. .|.+..+-++.|.|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 68899999999999999999999999999988631 1 234568999999999988887 578888888888876654
Q ss_pred cchhHHHH----HhhhHHhhh---------------hh-----------------ccccc--cceeEEEecCCCCCCHHH
Q 008162 209 KKSEREQE----LKGQFEQAM---------------KE-----------------TVDKF--QGLNLYIKNLGDSIDDEK 250 (575)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~---------------~~-----------------~~~~~--~~~~l~V~nl~~~~t~~~ 250 (575)
........ +.....-.. .. ...+. -..+++|.+|...|...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 43222111 000000000 00 00000 124699999999999999
Q ss_pred HHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 251 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 251 l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
+.+.|..+|.|...++.... -.-+|-|.|........|+. ++|..+.-....+..
T Consensus 168 ~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAI 222 (479)
T ss_pred hhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhh
Confidence 99999999999888765442 24466799998888888886 777766543333333
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.51 E-value=9.9e-05 Score=73.72 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=72.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeE--------EEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecce
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~ 303 (575)
...+|||.+|++.+++.+|.++|..+|.|.. +.|.+| +++..||-|.|.|.+...|+.|+.-++++.+++.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4568999999999999999999999998753 444455 4899999999999999999999999999999999
Q ss_pred eeeeehhccHH
Q 008162 304 PLYVAVAQRKE 314 (575)
Q Consensus 304 ~l~V~~a~~~~ 314 (575)
.|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999988664
No 161
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.46 E-value=0.00083 Score=73.03 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=10.3
Q ss_pred CcCHHHHHHHHhhcCC
Q 008162 51 SIDHKALHDTFSSFGN 66 (575)
Q Consensus 51 ~ite~~L~~~F~~~G~ 66 (575)
+++.+++.+.|...|.
T Consensus 82 ~ls~~e~~~~F~~~~~ 97 (1102)
T KOG1924|consen 82 SLSSNEVLELFELMGE 97 (1102)
T ss_pred hccHHHHHHHHHHHhh
Confidence 4566667777776654
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00032 Score=73.55 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=65.7
Q ss_pred cceeEEEecCCCCC------CHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceec-ceee
Q 008162 233 QGLNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPL 305 (575)
Q Consensus 233 ~~~~l~V~nl~~~~------t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~-g~~l 305 (575)
-.++|+|.|+|--- -...|.++|+++|+|..+.+..++.|.++||.|++|.+..+|..|+++|||+.++ .+..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 34579999998422 2346778999999999999998988889999999999999999999999999996 5667
Q ss_pred eeehhc
Q 008162 306 YVAVAQ 311 (575)
Q Consensus 306 ~V~~a~ 311 (575)
.|..-+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 776543
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.33 E-value=0.00057 Score=65.22 Aligned_cols=88 Identities=23% Similarity=0.375 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccE
Q 008162 4 LSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGF 83 (575)
Q Consensus 4 ~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~ 83 (575)
.+.|+++ |..+..+|+.+||.|.- ...|+|.||..-++++.+...|+.||+|..-.++.|..+...+-
T Consensus 7 ae~ak~e---Ld~~~~~~~~lr~rfa~---------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~e 74 (275)
T KOG0115|consen 7 AEIAKRE---LDGRFPKGRSLRVRFAM---------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTRE 74 (275)
T ss_pred HHHHHHh---cCCCCCCCCceEEEeec---------cceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccccc
Confidence 3445555 56788999999998853 14699999999999999999999999999999999988889999
Q ss_pred EEEEeCCHHHHHHHHHHhcC
Q 008162 84 GFVQFENKESAQNAIDKLNG 103 (575)
Q Consensus 84 afV~F~t~e~A~~Ai~~lng 103 (575)
++|.|...-.|.+|...++.
T Consensus 75 g~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred chhhhhcchhHHHHHHHhcc
Confidence 99999999999999988744
No 164
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.30 E-value=0.00052 Score=58.14 Aligned_cols=68 Identities=25% Similarity=0.459 Sum_probs=42.3
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-----ccCCeeeEEe
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM-----LINDKQVFVG 114 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~-----~i~g~~v~v~ 114 (575)
.|+|.++...++.++|++.|+.||.|.-|.+... ...|||.|.+.++|..|++++... .+.+..+.+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5889999999999999999999998887777653 236999999999999999977443 4444444443
No 165
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=9.6e-05 Score=82.73 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=62.2
Q ss_pred HHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHH--HHHHHHHHhhcCC
Q 008162 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM--EVLRSVAQQQANN 559 (575)
Q Consensus 493 ~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~--~~l~~~~~~~~~~ 559 (575)
-+|.|||+||+.++.+.|.+|.||||||||.....+|..|..++.|+..|++|+ +++..|-++...+
T Consensus 2607 e~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qei~Ad 2675 (3015)
T KOG0943|consen 2607 ERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQEIGAD 2675 (3015)
T ss_pred hhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHHhhhH
Confidence 588999999999999999999999999999999999999999999999999999 8998888765443
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.00051 Score=65.49 Aligned_cols=88 Identities=26% Similarity=0.354 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEE
Q 008162 185 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 264 (575)
Q Consensus 185 A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~ 264 (575)
|..|-..|.+....++.+.|.++..+ .|||.||...++.|.+...|+.||.|+..
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e~a 61 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIERA 61 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccchh
Confidence 56666778999999999999998642 59999999999999999999999999999
Q ss_pred EEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCC
Q 008162 265 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 297 (575)
Q Consensus 265 ~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng 297 (575)
.+..|..++..+-++|.|...-.|.+|+...+-
T Consensus 62 v~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 62 VAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred eeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 988888899999999999999999999987643
No 167
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.23 E-value=0.0026 Score=69.35 Aligned_cols=10 Identities=20% Similarity=0.704 Sum_probs=4.8
Q ss_pred hhhhhcCCCh
Q 008162 516 VTGMLLEMDQ 525 (575)
Q Consensus 516 itgm~l~~~~ 525 (575)
|--|+||.+.
T Consensus 718 ik~~ILevne 727 (1102)
T KOG1924|consen 718 IKNVILEVNE 727 (1102)
T ss_pred HHHHHhhccH
Confidence 3345555554
No 168
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.18 E-value=0.00046 Score=69.02 Aligned_cols=85 Identities=28% Similarity=0.314 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCe--------eEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI--------LSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGML 105 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I--------~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~ 105 (575)
...+...+|||-+|+.++++++|.++|..+|.| ..|+|.+| +++..||-|.|.|++...|..|++-+++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 346778889999999999999999999999877 34777777 789999999999999999999999999999
Q ss_pred cCCeeeEEeeecch
Q 008162 106 INDKQVFVGHFLRK 119 (575)
Q Consensus 106 i~g~~v~v~~~~~~ 119 (575)
+.+..+.|..+..+
T Consensus 141 f~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 141 FCGNTIKVSLAERR 154 (351)
T ss_pred ccCCCchhhhhhhc
Confidence 99888877665443
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0013 Score=69.16 Aligned_cols=78 Identities=26% Similarity=0.455 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCcC-------HHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC-Cee
Q 008162 39 GTGNIFIKNLDKSID-------HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQ 110 (575)
Q Consensus 39 ~~~~lfV~nLp~~it-------e~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~-g~~ 110 (575)
-...|+|.|+|- +. ..-|..+|+++|+|....+..++.|..+||.|++|++..+|..|++.+||+.++ .+.
T Consensus 57 ~D~vVvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 345699999985 32 233667899999999999998988889999999999999999999999998774 456
Q ss_pred eEEeeec
Q 008162 111 VFVGHFL 117 (575)
Q Consensus 111 v~v~~~~ 117 (575)
..|..+.
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 6665544
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.01 E-value=0.0016 Score=47.78 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=42.1
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHH
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 292 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~ 292 (575)
+.|-|.+.+.+..+. +..+|..||.|+.+.+... ..+.+|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 467888888766644 5569999999999887632 568999999999999985
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.97 E-value=0.0018 Score=63.78 Aligned_cols=78 Identities=23% Similarity=0.443 Sum_probs=62.2
Q ss_pred eEEEeCCCcCCCHHH------HHHHhccCCCeeEEEEEeCC-C--CCccee-EEEEeCCHHHHHHHHHHHCCCeeCCeeE
Q 008162 133 NVFVKNLDESTTDED------LKKIFGEYGTITSAVVMRDG-D--GKSKCF-GFVNFENADDAAKAVEALNGKKFDDREW 202 (575)
Q Consensus 133 ~v~V~nLp~~~tee~------L~~~F~~~G~i~~i~i~~d~-~--g~skg~-afV~F~~~e~A~~Ai~~l~~~~~~g~~l 202 (575)
-+||-+|+..+..|+ -.++|.+||.|..|.|-+.. . ..+..+ .||+|.+.|+|.+||.+.+|..++||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 389999998887776 24689999999999887652 1 111112 3999999999999999999999999999
Q ss_pred EEcccccc
Q 008162 203 YVGKAQKK 210 (575)
Q Consensus 203 ~v~~a~~~ 210 (575)
+..+...+
T Consensus 196 katYGTTK 203 (480)
T COG5175 196 KATYGTTK 203 (480)
T ss_pred eeecCchH
Confidence 99887654
No 172
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.96 E-value=0.0012 Score=67.22 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=64.2
Q ss_pred CCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC---C---CCCc--------ccEEE
Q 008162 20 NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD---G---SGQS--------KGFGF 85 (575)
Q Consensus 20 ~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~---~---~g~s--------kG~af 85 (575)
.||++|-.--..+-....-.+++|.+.|||.+-..+.|.++|..+|.|.+|+|+.- + .+.. +-+|+
T Consensus 211 DgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~Al 290 (484)
T KOG1855|consen 211 DGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECAL 290 (484)
T ss_pred CCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhh
Confidence 36666643222111122237889999999999999999999999999999999875 1 2222 34599
Q ss_pred EEeCCHHHHHHHHHHhcCCc
Q 008162 86 VQFENKESAQNAIDKLNGML 105 (575)
Q Consensus 86 V~F~t~e~A~~Ai~~lng~~ 105 (575)
|+|+..+.|++|.+.+|...
T Consensus 291 vEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 291 VEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred hhhhhhHHHHHHHHhhchhh
Confidence 99999999999999876644
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.93 E-value=0.0026 Score=62.75 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=65.1
Q ss_pred ccceeEEEecCCCCCCHHHH------HHHhhhcCCeeEEEEeeCC-CCCC-Cc-e-EEEEeCCHHHHHHHHHHhCCceec
Q 008162 232 FQGLNLYIKNLGDSIDDEKL------KELFSEFGTITSCKVMRDP-SGIS-KG-S-GFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l------~~~F~~~G~v~~~~i~~~~-~g~s-kg-~-afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
.+..-+||-+|+..+-+|++ .++|.+||.|..+.|-+.. ...+ .+ + .+|+|.+.+||.+||.+.+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34556999999998877762 4789999999999886543 1111 12 2 399999999999999999999999
Q ss_pred ceeeeeehhccH
Q 008162 302 SKPLYVAVAQRK 313 (575)
Q Consensus 302 g~~l~V~~a~~~ 313 (575)
|+.|+..+...|
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999987755
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.90 E-value=0.0014 Score=66.87 Aligned_cols=97 Identities=26% Similarity=0.262 Sum_probs=69.1
Q ss_pred CeeeEEeeecchhhhhhhhh-----ccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC---C---CCC------
Q 008162 108 DKQVFVGHFLRKQERETVAI-----KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD---G---DGK------ 170 (575)
Q Consensus 108 g~~v~v~~~~~~~~~~~~~~-----~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d---~---~g~------ 170 (575)
..+|+|.-.-++..|..... ....++|.+.|||.+-..+.|.+||+.+|.|.+|.|+.. . .+.
T Consensus 203 S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~ 282 (484)
T KOG1855|consen 203 SSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFE 282 (484)
T ss_pred cceEEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchh
Confidence 44566655444443322211 235688999999999999999999999999999999865 1 122
Q ss_pred --cceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEE
Q 008162 171 --SKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204 (575)
Q Consensus 171 --skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v 204 (575)
.+-+|+|+|+..+.|.+|.+.++....+-.-+.|
T Consensus 283 ~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkv 318 (484)
T KOG1855|consen 283 LQTKECALVEYEEVEAARKARELLNPEQNWRMGLKV 318 (484)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchh
Confidence 2568999999999999999877655544333444
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.83 E-value=0.00051 Score=65.69 Aligned_cols=69 Identities=20% Similarity=0.359 Sum_probs=57.6
Q ss_pred HHHHHHhh-hcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHHHHH
Q 008162 249 EKLKELFS-EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 317 (575)
Q Consensus 249 ~~l~~~F~-~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~~r~ 317 (575)
+++...|+ +||+|+++.|-.+-.-..+|-++|.|...++|.+|++.||+..+.|++|+..+..-..-+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 45555665 9999999988776555678999999999999999999999999999999999876544443
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.81 E-value=0.0051 Score=51.36 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=49.9
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEe-eC-------CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA-TD-------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~-~~-------~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v 111 (575)
..-|.|-+.|.+ ....|.+.|++||.|++..-. ++ +......+.-|+|.+..+|.+||.+ ||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456889999986 777899999999999887511 00 1112456899999999999999965 9999988654
Q ss_pred E
Q 008162 112 F 112 (575)
Q Consensus 112 ~ 112 (575)
-
T Consensus 84 v 84 (100)
T PF05172_consen 84 V 84 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 177
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.74 E-value=0.0034 Score=45.99 Aligned_cols=52 Identities=17% Similarity=0.459 Sum_probs=41.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 98 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai 98 (575)
+.|-|.|.+.+.. ++|..+|..||.|..+.+.. ...+.||.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 3578888886555 45666999999999887762 4558999999999999985
No 178
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.68 E-value=0.0013 Score=62.75 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=61.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-C--------CCcccE----EEEEeCCHHHHHHHHHHhcCCc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-S--------GQSKGF----GFVQFENKESAQNAIDKLNGML 105 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~--------g~skG~----afV~F~t~e~A~~Ai~~lng~~ 105 (575)
.++-|||++||+..+-.-|+++|+.||.|-.|.+-... . |.++++ |+|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56779999999999999999999999999999887652 2 233332 8899999999999999999999
Q ss_pred cCCee
Q 008162 106 INDKQ 110 (575)
Q Consensus 106 i~g~~ 110 (575)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98853
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.64 E-value=0.0058 Score=59.32 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=62.0
Q ss_pred EEEecC--CCCCC---HHHHHHHhhhcCCeeEEEEeeCCCCC--CCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 237 LYIKNL--GDSID---DEKLKELFSEFGTITSCKVMRDPSGI--SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 237 l~V~nl--~~~~t---~~~l~~~F~~~G~v~~~~i~~~~~g~--skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
|.+.|. +..++ ++++++.+++||.|..|.|+..++.- -.--.||+|...++|.+|+-.|||+.++|+.+...|
T Consensus 284 lllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 284 LLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 444444 33343 46889999999999999998775221 122369999999999999999999999999999998
Q ss_pred hccHHHHH
Q 008162 310 AQRKEERR 317 (575)
Q Consensus 310 a~~~~~r~ 317 (575)
.+-..-+.
T Consensus 364 yn~ekfs~ 371 (378)
T KOG1996|consen 364 YNLEKFSN 371 (378)
T ss_pred ccHHhhhh
Confidence 87654443
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.61 E-value=0.0081 Score=50.19 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=51.1
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEE-EeeC-------CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceee
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRD-------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~-i~~~-------~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l 305 (575)
.+.|.|=+.|...+ ..|.+.|++||+|.+.. +.++ +.-....+.-|+|.++.+|.+||. -||..+.|.-+
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 45788889998844 56779999999998875 1111 111236789999999999999997 89999988654
Q ss_pred e-eehh
Q 008162 306 Y-VAVA 310 (575)
Q Consensus 306 ~-V~~a 310 (575)
. |.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 4 5555
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.27 E-value=0.016 Score=51.37 Aligned_cols=56 Identities=20% Similarity=0.424 Sum_probs=46.1
Q ss_pred HHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 250 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 250 ~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+|-+.|..||++.-+++..+ .-+|+|.+-+.|.+|+. ++|..++|+.|.|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 67778899999998887755 58999999999999997 9999999999999998765
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.22 E-value=0.0026 Score=61.01 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=51.6
Q ss_pred HHHHHHHh-hcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 55 KALHDTFS-SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 55 ~~L~~~F~-~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
+||...|+ +||.|.+++|..+..-.-.|-+||+|...++|.+|++.||+.-+.|+.|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 999999999988754456888999999999999999999999999988866543
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.21 E-value=0.011 Score=62.69 Aligned_cols=83 Identities=24% Similarity=0.242 Sum_probs=67.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhh-hcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee---cceeeee
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFS-EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI---VSKPLYV 307 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i---~g~~l~V 307 (575)
..+..|||.||-.-+|.-.|+.++. ..|.|++. +|.. -|..|||.|.+.++|.....+|||..+ +++.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 3466799999999999999999998 45566666 3322 256799999999999999999999987 5899999
Q ss_pred ehhccHHHHHHH
Q 008162 308 AVAQRKEERRAR 319 (575)
Q Consensus 308 ~~a~~~~~r~~~ 319 (575)
.|+...+....+
T Consensus 517 df~~~deld~hr 528 (718)
T KOG2416|consen 517 DFVRADELDKHR 528 (718)
T ss_pred eecchhHHHHHh
Confidence 999877665433
No 184
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.99 E-value=0.0062 Score=58.28 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=59.4
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCC---------CCCC----ceEEEEeCCHHHHHHHHHHhCCceec
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------GISK----GSGFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~---------g~sk----g~afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
-.||+++||...+-..|+++|+.||.|-.|.+-.... |..+ --|.|+|.+...|..+...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 3699999999999999999999999999999875531 2222 23579999999999999999999999
Q ss_pred cee
Q 008162 302 SKP 304 (575)
Q Consensus 302 g~~ 304 (575)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 875
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.66 E-value=0.028 Score=54.77 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=52.1
Q ss_pred HHHHHHHhccCCCeeEEEEEeCCCC--CcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 145 DEDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 145 ee~L~~~F~~~G~i~~i~i~~d~~g--~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
++++++.+++||.|..|.|..+... .-.---||+|+..++|.+|+-.|||..|+||.+..++-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4578899999999999998876321 112235999999999999999999999999998877654
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.36 E-value=0.017 Score=61.40 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=61.5
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhh-cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc---CCeee
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI---NDKQV 111 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~-~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i---~g~~v 111 (575)
|+..++.|+|.||-.-.|...|+.++.. .|.|.+. +.| +-|..|||.|.|.++|.+.+..|+|..+ +.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 7777888999999999999999999984 4567666 333 2566899999999999999999999876 45556
Q ss_pred EEeee
Q 008162 112 FVGHF 116 (575)
Q Consensus 112 ~v~~~ 116 (575)
.+.+.
T Consensus 515 ~adf~ 519 (718)
T KOG2416|consen 515 IADFV 519 (718)
T ss_pred Eeeec
Confidence 55544
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.92 E-value=0.089 Score=41.86 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=40.9
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCC
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~ 194 (575)
.+||--.+|+.|...||.++|+.||.|.- .-+.| ..|||...+.+.|..++..+..
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~V-sWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIYV-SWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEEE-EEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEEE-EEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 34665569999999999999999998763 33333 2799999999999999987753
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.91 E-value=0.14 Score=38.64 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=43.8
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhc---CCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHh
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEF---GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~l 295 (575)
..|+|.+++ +.+.++|+.+|..| .....|+.+.|. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 379999995 47778899999998 235678888773 4789999999999999754
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.60 E-value=0.19 Score=37.83 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=43.9
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhc----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSF----GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~----G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l 101 (575)
..|+|+|++ +.+.+||+.+|..| + ...|..+.|. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 469999996 59999999999999 4 4467777663 4889999999999999754
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.43 E-value=0.17 Score=44.30 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=58.3
Q ss_pred cccccceeEEEecCCCCCC-HHHHHH---HhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeccee
Q 008162 229 VDKFQGLNLYIKNLGDSID-DEKLKE---LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304 (575)
Q Consensus 229 ~~~~~~~~l~V~nl~~~~t-~~~l~~---~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~ 304 (575)
....+-.+|.|.-|..++. .+|++. .++.||.|.+|... .+..|.|.|.+..+|-+|+.+++. ..-|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3345667888888777663 345554 45889999999875 256799999999999999998887 566788
Q ss_pred eeeehhc
Q 008162 305 LYVAVAQ 311 (575)
Q Consensus 305 l~V~~a~ 311 (575)
+.++|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8888754
No 191
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.34 E-value=0.13 Score=45.72 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=44.9
Q ss_pred HHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 147 DLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 147 ~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
+|.+.|..||.+.-+++..+ .-+|+|.+-++|.+|+ .++|.++.|+.|.+....+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 67788999999888877644 6799999999999999 58999999999999776543
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.03 E-value=0.17 Score=53.76 Aligned_cols=70 Identities=17% Similarity=0.367 Sum_probs=55.9
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhh--cCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCC--ceecceeeeeeh
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSE--FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVAV 309 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~--~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng--~~i~g~~l~V~~ 309 (575)
.|.|.|+-|+..+-.|+++.+|+. +-.+++|.+-.+. --||+|.+..||+.|.+-|.. +.|.||+|...+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 467889999999999999999954 6688999887663 269999999999999987743 456677665444
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.61 E-value=0.22 Score=43.68 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=54.5
Q ss_pred CCCCCeEEEcCCCCC----cCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 008162 37 KSGTGNIFIKNLDKS----IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 112 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~----ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~ 112 (575)
.-+.++|.|+=|.++ -+-+.|...++.||+|.+|..+ .+-.|.|.|++..+|-+|+..+.. ...|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 345677888655554 4455577788999999999776 345799999999999999988765 55566666
Q ss_pred Eeee
Q 008162 113 VGHF 116 (575)
Q Consensus 113 v~~~ 116 (575)
+.+-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 6553
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.45 E-value=0.31 Score=38.83 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=40.5
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ln 102 (575)
.-.+|. .|......||.++|+.||.|. |..+.| ..|||.....+.|..++..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 345555 999999999999999999995 555543 369999999999999998764
No 195
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.13 E-value=2.4 Score=41.93 Aligned_cols=183 Identities=13% Similarity=0.218 Sum_probs=110.8
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCC--------CCCcceeEEEEeCCHHHHHHH----HHHHCC--C
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG--------DGKSKCFGFVNFENADDAAKA----VEALNG--K 195 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~--------~g~skg~afV~F~~~e~A~~A----i~~l~~--~ 195 (575)
..++|.+.|+..+++-..+...|-+||.|++|.++.+. +.+......+.|-+.+.+-.- ++.|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999999999999765 234456788999888776553 333332 3
Q ss_pred eeCCeeEEEcccccchhH----H---HHHhhhHHhhhh-hccccccceeEEEecCCCCCCHHHHHHHh---h-----hcC
Q 008162 196 KFDDREWYVGKAQKKSER----E---QELKGQFEQAMK-ETVDKFQGLNLYIKNLGDSIDDEKLKELF---S-----EFG 259 (575)
Q Consensus 196 ~~~g~~l~v~~a~~~~~~----~---~~~~~~~~~~~~-~~~~~~~~~~l~V~nl~~~~t~~~l~~~F---~-----~~G 259 (575)
.+....|.+.+..-+... + ...........+ +-......++|.|.--....+++-+.+.+ . +|
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RY- 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRY- 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceE-
Confidence 345555655554321110 0 000000011111 12223345567776543332333333322 1 24
Q ss_pred CeeEEEEeeCC---CCCCCceEEEEeCCHHHHHHHHHHhC--Cceec-ceeeeeehhccH
Q 008162 260 TITSCKVMRDP---SGISKGSGFVAFSTPEEASRALAEMN--GKMIV-SKPLYVAVAQRK 313 (575)
Q Consensus 260 ~v~~~~i~~~~---~g~skg~afV~f~s~~~A~~A~~~ln--g~~i~-g~~l~V~~a~~~ 313 (575)
.++++.++... +.-.+.||.+.|-+..-|...++-+. +...+ .+...|.++...
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 57888887442 34468899999999999999888664 44443 567777766533
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.93 E-value=0.26 Score=52.39 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=53.3
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhcc--CCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHC--CCeeCCeeEEE
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGE--YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN--GKKFDDREWYV 204 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~--~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~--~~~~~g~~l~v 204 (575)
+.+.|.|+.||.....|+++.+|+. |-++.+|.+-.+.+ =||+|++..||+.|.+.|. -+.|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4467899999999999999999974 56777887765422 3999999999999998764 34456665543
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.45 E-value=0.072 Score=53.37 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=63.2
Q ss_pred cceeEEEecCCCCCCHHHHH---HHhhhcCCeeEEEEeeCCC--C--CCCceEEEEeCCHHHHHHHHHHhCCceecceee
Q 008162 233 QGLNLYIKNLGDSIDDEKLK---ELFSEFGTITSCKVMRDPS--G--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~~~i~~~~~--g--~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l 305 (575)
+..-+||-+|+..+.++.+. +.|..||.|.++.+..+.. . ..-.-++|+|...++|..||...+|..++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 33458888998887666554 5788999999999887652 1 112347999999999999999999999999998
Q ss_pred eeehhccH
Q 008162 306 YVAVAQRK 313 (575)
Q Consensus 306 ~V~~a~~~ 313 (575)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88777654
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.90 E-value=0.37 Score=45.16 Aligned_cols=60 Identities=28% Similarity=0.341 Sum_probs=46.1
Q ss_pred CHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhC--Cceecceeeeeehhc
Q 008162 247 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYVAVAQ 311 (575)
Q Consensus 247 t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~ln--g~~i~g~~l~V~~a~ 311 (575)
..+.|+++|..|+.+..+.++.. =+-..|.|.+.++|.+|...|+ +..+.|+.++|.+++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999998887755 3357899999999999999999 999999999999884
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.81 E-value=1.7 Score=37.10 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=48.8
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
-+.+-..|..++.++|..+.+.+- .|..++|++|... ++--+++.|.+.++|++..+..||..++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455555666667766666654 5778888887443 55568899999999999999999988764
No 200
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.06 E-value=4.3 Score=40.22 Aligned_cols=168 Identities=15% Similarity=0.270 Sum_probs=105.1
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC--------CCCcccEEEEEeCCHHHHHHHHH----HhcC--Cc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG--------SGQSKGFGFVQFENKESAQNAID----KLNG--ML 105 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~--------~g~skG~afV~F~t~e~A~~Ai~----~lng--~~ 105 (575)
++.|.+.|+..+++-..+...|-.||+|.+|.++.+. +-+......+.|-+.+.+-.... +|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999999999999999999999875 23345678999999998866654 3333 23
Q ss_pred cCCeeeEEeeecc---h-----h-hhhh-----------hhhccCCceEEEeCCCcCCCHHHHHH-Hh---ccCC----C
Q 008162 106 INDKQVFVGHFLR---K-----Q-ERET-----------VAIKTKFNNVFVKNLDESTTDEDLKK-IF---GEYG----T 157 (575)
Q Consensus 106 i~g~~v~v~~~~~---~-----~-~~~~-----------~~~~~~~~~v~V~nLp~~~tee~L~~-~F---~~~G----~ 157 (575)
+....+.+.+..- . . +..- .......+.|.|. +...++++++.+ .+ ..-+ .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceEE
Confidence 4555555554331 0 0 0000 0011233455554 445554554433 22 1213 2
Q ss_pred eeEEEEEeC---CCCCcceeEEEEeCCHHHHHHHHHHHC--CCee-CCeeEEEcccc
Q 008162 158 ITSAVVMRD---GDGKSKCFGFVNFENADDAAKAVEALN--GKKF-DDREWYVGKAQ 208 (575)
Q Consensus 158 i~~i~i~~d---~~g~skg~afV~F~~~e~A~~Ai~~l~--~~~~-~g~~l~v~~a~ 208 (575)
+++|.++.. ...-.+.|+.+.|-+..-|...++.+. +... -.+..+|....
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 566776643 233467899999999998888887664 2222 24566666554
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.02 E-value=1.7 Score=37.04 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=49.1
Q ss_pred ceEE-EeCCCcCCCHHHHHHHhccCC-CeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCC
Q 008162 132 NNVF-VKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199 (575)
Q Consensus 132 ~~v~-V~nLp~~~tee~L~~~F~~~G-~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g 199 (575)
+.+. +...|+.++.++|..+.+.+- .|..++|++|... ++--+.+.|.+.++|..-.+..||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4444 444455566667776666663 5778888887443 56678899999999999999999998864
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.92 E-value=0.014 Score=63.11 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=61.0
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 206 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~ 206 (575)
...+|||+|+...+..+-++.+...+|.|.++.... |||+.|..+.....|+..++...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 346799999999999999999999999998887653 999999999999999999988888888877655
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.58 E-value=0.13 Score=51.53 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=59.2
Q ss_pred eEEEeCCCcCCCHHHHHH---HhccCCCeeEEEEEeCCC--C--CcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEc
Q 008162 133 NVFVKNLDESTTDEDLKK---IFGEYGTITSAVVMRDGD--G--KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 205 (575)
Q Consensus 133 ~v~V~nLp~~~tee~L~~---~F~~~G~i~~i~i~~d~~--g--~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~ 205 (575)
-+||-+|+....++.+.+ .|..||.|.+|.+.++.. . ....-++|+|+..++|..||...+|..+.|+.+...
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 477888887776665543 689999999998887641 1 112237999999999999999999999999887766
Q ss_pred ccccc
Q 008162 206 KAQKK 210 (575)
Q Consensus 206 ~a~~~ 210 (575)
....+
T Consensus 159 ~gttk 163 (327)
T KOG2068|consen 159 LGTTK 163 (327)
T ss_pred hCCCc
Confidence 66544
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.31 E-value=0.29 Score=45.61 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhh-cCCe---eEEEEeeC--CCC-CcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSS-FGNI---LSCKIATD--GSG-QSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~-~G~I---~~i~v~~~--~~g-~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
...|-|++||++.|++++.+.++. ++.- ..+.-..+ ... ..-.-|||+|.+.+++...+..++|+.+-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 347999999999999999998876 6655 23331222 111 123349999999999999999999977643
No 205
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=90.29 E-value=3.8 Score=39.04 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=7.0
Q ss_pred CceEEEEeCCHHHHH
Q 008162 275 KGSGFVAFSTPEEAS 289 (575)
Q Consensus 275 kg~afV~f~s~~~A~ 289 (575)
-|.++-|+.-+.+..
T Consensus 48 pglsihcmqvhketi 62 (341)
T KOG2893|consen 48 PGLSIHCMQVHKETI 62 (341)
T ss_pred CCceeehhhhhhhhh
Confidence 445555554444433
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.25 E-value=0.43 Score=38.76 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=45.4
Q ss_pred EEEEeCCHHHHHHHHHHhcC-CccCCeeeEE--eeecchhhh-hhhhhccCCceEEEeCCCcCCCHHHHHHHhc
Q 008162 84 GFVQFENKESAQNAIDKLNG-MLINDKQVFV--GHFLRKQER-ETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 153 (575)
Q Consensus 84 afV~F~t~e~A~~Ai~~lng-~~i~g~~v~v--~~~~~~~~~-~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~ 153 (575)
|+|+|...+-|.+.++.-.. ..+++..+.| .++....-. -........++|.|.|||...++|+|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999965322 2344444444 343322211 1111234567899999999999999988654
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.94 E-value=1.5 Score=45.66 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
.+..|+|-.+|...+-.||..|...|- .|..|++++|..+ ++--++|.|.+.++|....+.+||..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 377899999999999999999988775 6899999997443 44458999999999999999999988764
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.80 E-value=1.1 Score=46.85 Aligned_cols=110 Identities=16% Similarity=0.298 Sum_probs=76.9
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccC-CCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCe------eEE
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEY-GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR------EWY 203 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~-G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~------~l~ 203 (575)
.+-|+|--+|..++-.||..++..+ ..|.++.+++|..+ ++-..+|.|.+.++|..-.+.+||+.|..- -|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLY 152 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEE
Confidence 6789999999999999999999877 46889999997443 345679999999999999999999998752 345
Q ss_pred EcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCC
Q 008162 204 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247 (575)
Q Consensus 204 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 247 (575)
|.+..-..... ............+.|.|.+..++.+++
T Consensus 153 V~~ve~~~s~d------~as~~~~~~tELPTCpVCLERMD~s~~ 190 (493)
T KOG0804|consen 153 VDRVEVTESED------GASEPPTGLTELPTCPVCLERMDSSTT 190 (493)
T ss_pred EEEEEEEeccc------CCCCCCCCcccCCCcchhHhhcCcccc
Confidence 54433221000 000011122345667777777777665
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.58 E-value=0.92 Score=44.81 Aligned_cols=60 Identities=17% Similarity=0.344 Sum_probs=47.3
Q ss_pred EEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 008162 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 109 (575)
Q Consensus 43 lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~ 109 (575)
|-|-+.+. -.-..|..+|++||.|++.... . +-.|-.|.|.+.-+|.+||.+ ||++|+|.
T Consensus 200 VTVfGFpp-g~~s~vL~~F~~cG~Vvkhv~~--~---ngNwMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPP-GQVSIVLNLFSRCGEVVKHVTP--S---NGNWMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred EEEeccCc-cchhHHHHHHHhhCeeeeeecC--C---CCceEEEEecchhHHHHhhhh-cCeeeccc
Confidence 66777776 3456788999999999765443 2 344899999999999999976 89888773
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.25 E-value=1.7 Score=33.35 Aligned_cols=56 Identities=16% Similarity=0.375 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeee
Q 008162 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307 (575)
Q Consensus 244 ~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V 307 (575)
..++-++++..+..|+- .+|..|.+| =||.|.+..+|+++....+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35778999999999942 344556544 389999999999999999999998877654
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.22 E-value=0.06 Score=58.31 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
-..-+|||+|+-..+..+-++.+...+|.|.+|+... |||.+|.....+.+|+..++...++|.++.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456899999999999999999999999999998765 999999999999999999999999888887755
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.84 E-value=1.2 Score=34.98 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHhhhcC-----CeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 244 DSIDDEKLKELFSEFG-----TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 244 ~~~t~~~l~~~F~~~G-----~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
+.++..+|..++..-+ .|-.++|..+ |.||+-.. +.|..+++.|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678888888887664 3567787766 89999977 6899999999999999999999864
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.44 E-value=1.5 Score=43.37 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=54.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeee-eehhcc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY-VAVAQR 312 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~-V~~a~~ 312 (575)
...|-|-+++..-. .-|-.+|++||+|.+.... .+ -.+-.|.|.+.-+|++||. .||++|+|..+. |+-...
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 44677778776554 4566899999999887644 22 3489999999999999997 899999876544 555444
Q ss_pred H
Q 008162 313 K 313 (575)
Q Consensus 313 ~ 313 (575)
+
T Consensus 270 k 270 (350)
T KOG4285|consen 270 K 270 (350)
T ss_pred H
Confidence 4
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.04 E-value=1.1 Score=41.87 Aligned_cols=59 Identities=29% Similarity=0.210 Sum_probs=45.8
Q ss_pred CHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CCccCCeeeEEeee
Q 008162 53 DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN--GMLINDKQVFVGHF 116 (575)
Q Consensus 53 te~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ln--g~~i~g~~v~v~~~ 116 (575)
..+.|+++|..|+.+.++.+.+ +-+-..|.|.+.++|.+|...++ +..+.|..+.+-+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 3578999999999998888776 44569999999999999999999 89999998888666
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.80 E-value=0.31 Score=54.36 Aligned_cols=72 Identities=28% Similarity=0.412 Sum_probs=61.6
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee--cceeeeeehhccH
Q 008162 237 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRK 313 (575)
Q Consensus 237 l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i--~g~~l~V~~a~~~ 313 (575)
.++.|..-..+-..|-.+|+.||.|.+.+..++ -..|.|.|.+.+.|..|+++++|+.+ -|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 456666677888999999999999999998877 44799999999999999999999987 4888888887743
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.59 E-value=2.6 Score=32.31 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=42.9
Q ss_pred CcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 008162 51 SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 112 (575)
Q Consensus 51 ~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~ 112 (575)
.++-.+++..++.|+-. +|..|.+| -||.|.+.++|++|.+..++..+.+..+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 57889999999999644 45555444 57999999999999999999887665554
No 217
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.72 E-value=0.32 Score=50.79 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=57.8
Q ss_pred eEEEecCCCCC-CHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 236 NLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 236 ~l~V~nl~~~~-t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
.|-+.-.+... +-++|...|..||.|..|.|-.. .--|.|+|.+..+|-+|.. .++..|+++.|+|.|-+..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 34444444444 45789999999999999987554 3468999999999988886 8999999999999997753
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.69 E-value=2.1 Score=46.00 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCC-cCHHHHHHHHhhc----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 008162 37 KSGTGNIFIKNLDKS-IDHKALHDTFSSF----GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~-ite~~L~~~F~~~----G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v 111 (575)
...+++|-|-||+++ +..+||+-+|+.| |.|++|+|+..+.|..+ |....+.|-.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeR-------------------M~eEeV~GP~~ 231 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKER-------------------MKEEEVHGPPK 231 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHH-------------------hhhhcccCChh
Confidence 456788999999995 8999999999877 58999999987666432 22222222211
Q ss_pred EEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHH
Q 008162 112 FVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191 (575)
Q Consensus 112 ~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~ 191 (575)
.+-........ .. ......++-.++.+..|+. ..... -||.|+|.+.++|....+.
T Consensus 232 el~~~~e~~~~------s~--------sD~ee~~~~~~~kLR~Yq~-~rLkY---------YyAVvecDsi~tA~~vYe~ 287 (650)
T KOG2318|consen 232 ELFKPVEEYKE------SE--------SDDEEEEDVDREKLRQYQL-NRLKY---------YYAVVECDSIETAKAVYEE 287 (650)
T ss_pred hhccccccCcc------cc--------cchhhhhhHHHHHHHHHHh-hhhee---------EEEEEEecCchHHHHHHHh
Confidence 11100000000 00 0011111122344444431 11111 2899999999999999999
Q ss_pred HCCCeeCCe--eEEEccc
Q 008162 192 LNGKKFDDR--EWYVGKA 207 (575)
Q Consensus 192 l~~~~~~g~--~l~v~~a 207 (575)
+.|..+... .+-+++.
T Consensus 288 CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 288 CDGIEFESSANKLDLRFI 305 (650)
T ss_pred cCcceeccccceeeeeec
Confidence 999998654 4444444
No 219
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.67 E-value=1 Score=41.99 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=46.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhh-cCCe---eEEEEeeCC--CC-CCCceEEEEeCCHHHHHHHHHHhCCceec
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSE-FGTI---TSCKVMRDP--SG-ISKGSGFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v---~~~~i~~~~--~g-~skg~afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
.+++|.|++||...|++++.+.++. ++.- ..+.-.... .. ..-.-|+|.|.+.+++......++|..+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 3568999999999999999998877 6665 233211221 11 12355899999999999999999998774
No 220
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.52 E-value=0.38 Score=50.25 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=52.4
Q ss_pred cCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 52 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 52 ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
-|.++|...|..||.|..|.|-.. .-.|.|+|.+..+|-+|. ...+..|+++.+.|.|....
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 467889999999999999988653 336999999999998888 46899999999999887653
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=81.62 E-value=1.2 Score=40.29 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=72.3
Q ss_pred CcCHHHHHHHHhh-cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhhhhcc
Q 008162 51 SIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 129 (575)
Q Consensus 51 ~ite~~L~~~F~~-~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~~~ 129 (575)
.++-..|...+.. ++..-.+.+..- ..++..++|.+.+++.++++. ....+++..+.+....+...........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~ 102 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEH 102 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceec
Confidence 4666777766654 343334444432 457899999999999999963 4456777777776665433222211122
Q ss_pred CCceEEEeCCCcC-CCHHHHHHHhccCCCeeEEEEE
Q 008162 130 KFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVM 164 (575)
Q Consensus 130 ~~~~v~V~nLp~~-~tee~L~~~F~~~G~i~~i~i~ 164 (575)
...-|.|.|||.. ++++-++.+-+.+|.+..+...
T Consensus 103 ~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 103 IPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 3344888999976 7888899999999998776544
No 222
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=80.99 E-value=54 Score=31.51 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=14.3
Q ss_pred CCCCCceEEEEeCCHHHHHHHHH
Q 008162 271 SGISKGSGFVAFSTPEEASRALA 293 (575)
Q Consensus 271 ~g~skg~afV~f~s~~~A~~A~~ 293 (575)
-|.+..|--|.-++.+..-+|+.
T Consensus 48 pglsihcmqvhketid~ip~av~ 70 (341)
T KOG2893|consen 48 PGLSIHCMQVHKETIDKIPAAVH 70 (341)
T ss_pred CCceeehhhhhhhhhhccccccc
Confidence 35556566666666666666664
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.37 E-value=6.4 Score=30.84 Aligned_cols=59 Identities=29% Similarity=0.415 Sum_probs=35.9
Q ss_pred cCCCHHHHHHHhccCC-----CeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 141 ESTTDEDLKKIFGEYG-----TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 141 ~~~tee~L~~~F~~~G-----~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
..++..+|..++...+ .|-.|.|..+ |+||+-.. +.|..+++.|++..+.|+.+.++.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577788888887664 3567777755 89998855 5789999999999999999998754
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.95 E-value=0.87 Score=37.01 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=44.1
Q ss_pred EEEEeCCHHHHHHHHHHHCCC--eeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHH
Q 008162 175 GFVNFENADDAAKAVEALNGK--KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 252 (575)
Q Consensus 175 afV~F~~~e~A~~Ai~~l~~~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 252 (575)
|+|+|.+.+-|++.++ +..+ .+++..+.|....-....-. .-+-.......+|.|.|||+..++++|+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~---------k~qv~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQ---------KFQVFSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCce---------EEEEEEcccCCEEEEeCCCCCCChhhhe
Confidence 5899999999999985 3333 34555555533322111000 0011223455689999999999999997
Q ss_pred HHh
Q 008162 253 ELF 255 (575)
Q Consensus 253 ~~F 255 (575)
+..
T Consensus 71 D~L 73 (88)
T PF07292_consen 71 DKL 73 (88)
T ss_pred eeE
Confidence 764
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.34 E-value=6 Score=38.84 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=34.9
Q ss_pred EEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCH
Q 008162 43 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENK 91 (575)
Q Consensus 43 lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~ 91 (575)
|+++||+.++.-+||+..+.+.|.+---.-++. ..|-||+||.+.
T Consensus 333 i~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 333 IKLTNLSRDIRVKDLKSELRKRECTPMSISWKG----HFGKCFLHFGNR 377 (396)
T ss_pred eeeccCccccchHHHHHHHHhcCCCceeEeeec----CCcceeEecCCc
Confidence 999999999999999999998875432222332 566799999763
No 226
>PHA03378 EBNA-3B; Provisional
Probab=68.84 E-value=1.6e+02 Score=33.01 Aligned_cols=18 Identities=6% Similarity=-0.206 Sum_probs=8.6
Q ss_pred HHHHHHhhhhhhhhhhcc
Q 008162 492 QQRTLLGESLYPLVEQLE 509 (575)
Q Consensus 492 ~~~~~~g~~l~~~~~~~~ 509 (575)
-.|..-+|++-+.+-.-.
T Consensus 840 ~k~~a~~~r~~~~~~~p~ 857 (991)
T PHA03378 840 LKKPAALERQAAAGPTPS 857 (991)
T ss_pred cccchhhhhhcccCCCCC
Confidence 344455555555444333
No 227
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.99 E-value=13 Score=40.27 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=60.2
Q ss_pred ccceeEEEecCCCC-CCHHHHHHHhhhc----CCeeEEEEeeCCC-----------CC----------------------
Q 008162 232 FQGLNLYIKNLGDS-IDDEKLKELFSEF----GTITSCKVMRDPS-----------GI---------------------- 273 (575)
Q Consensus 232 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~v~~~~i~~~~~-----------g~---------------------- 273 (575)
....+|-|.|++|. +..++|.-+|+.| |.|.+|.|....- |.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34568999999985 5788999999776 5899999976432 21
Q ss_pred --------------CC-ceEEEEeCCHHHHHHHHHHhCCceecc--eeeeeehh
Q 008162 274 --------------SK-GSGFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVA 310 (575)
Q Consensus 274 --------------sk-g~afV~f~s~~~A~~A~~~lng~~i~g--~~l~V~~a 310 (575)
.+ =||.|.|.+.+.|.+.+....|..+.. ..|-+.|.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11 268999999999999999999999874 44445543
No 228
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=63.94 E-value=27 Score=28.21 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=42.8
Q ss_pred eEEEcCCCCCcCHHHHHHHHhh-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 008162 42 NIFIKNLDKSIDHKALHDTFSS-FG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~-~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l 101 (575)
+-+.--.+..++..+|++.++. || .|.+|....-..+. .-|||.+...++|.+...++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHhh
Confidence 3444446788999999999976 56 78888877764433 35999999999998876553
No 229
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.39 E-value=5.4 Score=36.73 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=52.4
Q ss_pred eeEEEecCCCCCCH-----HHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecce-eeeee
Q 008162 235 LNLYIKNLGDSIDD-----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYVA 308 (575)
Q Consensus 235 ~~l~V~nl~~~~t~-----~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~-~l~V~ 308 (575)
+++.+.+++..+.. .....+|..|.+.....+++. .++..|.|.+++.|..|...++...+.|+ .+...
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45777777766543 344456665655555444433 56678899999999999999999999988 78777
Q ss_pred hhcc
Q 008162 309 VAQR 312 (575)
Q Consensus 309 ~a~~ 312 (575)
+++.
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 7764
No 230
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.66 E-value=40 Score=33.10 Aligned_cols=104 Identities=18% Similarity=0.317 Sum_probs=61.2
Q ss_pred CCcCHHHHHHHHhhcC---CeeEEEEeeCCCCCcccEEEEEeCCHHHH----HHHHHHhcCCccCCeeeEEeeecch---
Q 008162 50 KSIDHKALHDTFSSFG---NILSCKIATDGSGQSKGFGFVQFENKESA----QNAIDKLNGMLINDKQVFVGHFLRK--- 119 (575)
Q Consensus 50 ~~ite~~L~~~F~~~G---~I~~i~v~~~~~g~skG~afV~F~t~e~A----~~Ai~~lng~~i~g~~v~v~~~~~~--- 119 (575)
.+|++=||.+-++..- ...+|+|..+ ..-||.|+..-.. ...+..|+| ..+.++-+...
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckires------nid~iifeael~n~gimkk~l~~ldg-----fsiklsgfad~lkv 115 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRES------NIDFIIFEAELENKGIMKKFLACLDG-----FSIKLSGFADILKV 115 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeeccc------ccceEEeeHhhhhhhHHHHHHHHhcC-----CeeeecccchHHhh
Confidence 4788888888777442 3467777653 2478888765443 334444444 44444333210
Q ss_pred -------------h---------hhhhhhhccCCceEEEeCCCcCC------------CHHHHHHHhccCCCeeEEEEE
Q 008162 120 -------------Q---------ERETVAIKTKFNNVFVKNLDEST------------TDEDLKKIFGEYGTITSAVVM 164 (575)
Q Consensus 120 -------------~---------~~~~~~~~~~~~~v~V~nLp~~~------------tee~L~~~F~~~G~i~~i~i~ 164 (575)
. +-..........+|++.+||..| +++.|+..|+.||.|..+.|.
T Consensus 116 ka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 116 KAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred hHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 0 00000011233568888888543 567899999999999988764
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.64 E-value=12 Score=32.29 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=28.6
Q ss_pred eEEEcCCCCC---------cCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHH
Q 008162 42 NIFIKNLDKS---------IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 93 (575)
Q Consensus 42 ~lfV~nLp~~---------ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~ 93 (575)
.+.|-|++.. .+.++|.+.|+.|..+ .++.+.+..| +.|+++|+|.+.-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~g-h~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQG-HTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTE-EEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCC-CcEEEEEEECCChH
Confidence 3566666443 4678899999999877 4666666554 78999999987443
No 232
>PHA03378 EBNA-3B; Provisional
Probab=57.67 E-value=1.3e+02 Score=33.57 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=7.4
Q ss_pred ceeEEEecCCCC
Q 008162 234 GLNLYIKNLGDS 245 (575)
Q Consensus 234 ~~~l~V~nl~~~ 245 (575)
.-|||-..|+-+
T Consensus 538 ~pcvy~~~l~ie 549 (991)
T PHA03378 538 APCVYTEDLDIE 549 (991)
T ss_pred CCceeecccCcc
Confidence 446777777543
No 233
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=56.29 E-value=6.8 Score=44.21 Aligned_cols=71 Identities=27% Similarity=0.395 Sum_probs=56.9
Q ss_pred EEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCee--CCeeEEEccccc
Q 008162 134 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQK 209 (575)
Q Consensus 134 v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~--~g~~l~v~~a~~ 209 (575)
..+.|.+-+.+..-|..+|++||.|.++...++-+ -+.|.|.+.+.|..|+++++|+++ .|....|.++..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 33555566778888999999999999999887732 689999999999999999999886 355666666643
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=55.42 E-value=49 Score=26.22 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=41.9
Q ss_pred eEEEcCCCCCcCHHHHHHHHhh-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 008162 42 NIFIKNLDKSIDHKALHDTFSS-FG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~-~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l 101 (575)
+-++-..+..++..+|+..++. || .|.+|....-..+ .--|||.+...+.|.+.-.++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 3444556789999999999876 55 6777777665433 335999999988888766543
No 235
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.37 E-value=45 Score=26.89 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=42.9
Q ss_pred eEEEeCCCcCCCHHHHHHHhcc-CC-CeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHH
Q 008162 133 NVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192 (575)
Q Consensus 133 ~v~V~nLp~~~tee~L~~~F~~-~G-~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l 192 (575)
+-|.-..+...++.+|++.++. || .|.++..+.-..+ ..-|||.+...++|.+....+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 5666667889999999999987 45 6777777655433 235899999988888776543
No 236
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.75 E-value=16 Score=31.47 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=28.3
Q ss_pred eEEEecCCCC---------CCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHH
Q 008162 236 NLYIKNLGDS---------IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287 (575)
Q Consensus 236 ~l~V~nl~~~---------~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~ 287 (575)
++.|.|++.+ .+.++|++.|+.|..+ +++...+..|. .|+++|.|.+.-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh-~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGH-TGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEE-EEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCC-cEEEEEEECCChH
Confidence 4556666433 3558999999999776 46666665553 8899999997544
No 237
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=45.43 E-value=32 Score=29.24 Aligned_cols=103 Identities=28% Similarity=0.375 Sum_probs=59.1
Q ss_pred CCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc--cCCeeeEEeeecchhhhhhh
Q 008162 48 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML--INDKQVFVGHFLRKQERETV 125 (575)
Q Consensus 48 Lp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~--i~g~~v~v~~~~~~~~~~~~ 125 (575)
||+-+ +.|-|.|+.-|+|.+|..+.. |. -+.|+-.++|++ ++|+ +.|+.....
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtq------------yp----dndal~~~~G~lE~vDg~-i~IGs~q~~------ 65 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQ------------YP----DNDALLYVHGTLEQVDGN-IRIGSGQTP------ 65 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEec------------cC----CchhhheeeeehhhccCc-EEEccCCCc------
Confidence 55433 358899999999999877654 11 122444555643 4443 555433211
Q ss_pred hhccCCceEEEeC---------CCcCCCHHHHHHHhcc---CCCeeEEEEEeC--CCCCcceeEEEEeCCH
Q 008162 126 AIKTKFNNVFVKN---------LDESTTDEDLKKIFGE---YGTITSAVVMRD--GDGKSKCFGFVNFENA 182 (575)
Q Consensus 126 ~~~~~~~~v~V~n---------Lp~~~tee~L~~~F~~---~G~i~~i~i~~d--~~g~skg~afV~F~~~ 182 (575)
..|+|.+ -|+.+|..+++++|+. |--|+.-.+.+| ..| +-+.||..|...
T Consensus 66 ------~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 66 ------ASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred ------ccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 1233322 2578899999999974 333444444554 223 334678877654
No 238
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.96 E-value=39 Score=25.46 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=16.8
Q ss_pred HHHHHHhhhcCCeeEEEEee
Q 008162 249 EKLKELFSEFGTITSCKVMR 268 (575)
Q Consensus 249 ~~l~~~F~~~G~v~~~~i~~ 268 (575)
.+||++|+..|.|.-+.|-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999998877643
No 239
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=44.35 E-value=79 Score=25.04 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=42.2
Q ss_pred eEEEecCCCCCCHHHHHHHhhh-cC-CeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008162 236 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 294 (575)
Q Consensus 236 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~ 294 (575)
+-|+-.++...+..+|++.++. || .|.+|..+.-+.+ .-=|||++..-++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 4677778899999999999977 55 5777766555433 34589999988888776543
No 240
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.31 E-value=4.9 Score=41.87 Aligned_cols=80 Identities=9% Similarity=0.003 Sum_probs=65.9
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHH
Q 008162 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314 (575)
Q Consensus 236 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~ 314 (575)
..++..++...+++++.-.|..||.|..+...+.. .|..+-.+||.-.+ .+|..+|..+.-..++|..++++++...-
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 46778889999999999999999999988776543 45567788888776 67889999999999999999999987654
Q ss_pred HH
Q 008162 315 ER 316 (575)
Q Consensus 315 ~r 316 (575)
..
T Consensus 84 ~~ 85 (572)
T KOG4365|consen 84 EK 85 (572)
T ss_pred hh
Confidence 33
No 241
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.26 E-value=47 Score=34.48 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=48.8
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCe-eEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceee
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 305 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v-~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l 305 (575)
..|-|-++|.....+||...|+.|++- -+|+++.| -.+|-.|.+...|..|+. +..-.+.=++|
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt-~kh~~lKiRpL 456 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALT-LKHDWLKIRPL 456 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhh-ccCceEEeeeh
Confidence 458889999999999999999999753 45666655 279999999999999997 44434443433
No 242
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=43.98 E-value=23 Score=31.68 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=55.7
Q ss_pred ceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCC-CCHHH
Q 008162 172 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS-IDDEK 250 (575)
Q Consensus 172 kg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~ 250 (575)
.++..+.|.+.+++.++++ .....+.+..+.+..-.+..... +..-......|.|.|||.. .+++-
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~------------~~~~~~~~vWVri~glP~~~~~~~~ 121 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPS------------EVKFEHIPVWVRIYGLPLHLWSEEI 121 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccc------------ccceeccchhhhhccCCHHHhhhHH
Confidence 3588999999999999986 34445556555554433211100 0001112346888899976 58889
Q ss_pred HHHHhhhcCCeeEEEEeeC
Q 008162 251 LKELFSEFGTITSCKVMRD 269 (575)
Q Consensus 251 l~~~F~~~G~v~~~~i~~~ 269 (575)
|+.+-+.+|.+.++.....
T Consensus 122 ~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 122 LKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred HHHHHHhcCCeEEEEcCCC
Confidence 9999999999999875443
No 243
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.91 E-value=1e+02 Score=32.89 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=4.2
Q ss_pred EEEeCCCc
Q 008162 134 VFVKNLDE 141 (575)
Q Consensus 134 v~V~nLp~ 141 (575)
+.+..||.
T Consensus 187 ~ll~elPp 194 (483)
T KOG2236|consen 187 HLLDELPP 194 (483)
T ss_pred hhhhcCCC
Confidence 44555554
No 244
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=41.74 E-value=47 Score=34.48 Aligned_cols=42 Identities=33% Similarity=0.490 Sum_probs=32.4
Q ss_pred CCCCeEEEcCCCCC-cCHHHHHHHHhhc----CCeeEEEEeeCCCCC
Q 008162 38 SGTGNIFIKNLDKS-IDHKALHDTFSSF----GNILSCKIATDGSGQ 79 (575)
Q Consensus 38 ~~~~~lfV~nLp~~-ite~~L~~~F~~~----G~I~~i~v~~~~~g~ 79 (575)
+.+.+|-|-||+++ +...||.-+|+.| |.|..|.|...+.|+
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGk 190 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGK 190 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhH
Confidence 45667999999985 8889999999876 468878887654443
No 245
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.85 E-value=1e+02 Score=32.77 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=6.7
Q ss_pred EEeCCHHHHHHHHHHh
Q 008162 280 VAFSTPEEASRALAEM 295 (575)
Q Consensus 280 V~f~s~~~A~~A~~~l 295 (575)
+.|.+ +++.+..+.+
T Consensus 319 ~dfSD-DEkEaeak~~ 333 (483)
T KOG2236|consen 319 QDFSD-DEKEAEAKQM 333 (483)
T ss_pred hccch-HHHHHHHHHH
Confidence 56655 3334333334
No 246
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=40.42 E-value=88 Score=28.02 Aligned_cols=56 Identities=7% Similarity=0.248 Sum_probs=38.3
Q ss_pred EEEcCCCCCcCHHHHHHHHhh-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 008162 43 IFIKNLDKSIDHKALHDTFSS-FG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100 (575)
Q Consensus 43 lfV~nLp~~ite~~L~~~F~~-~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ 100 (575)
-++--.+...+..+|++.++. |+ .|..|....-..|.- -|||.+....+|.+...+
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHHh
Confidence 444446678889999988875 55 566666666544433 499999888877655544
No 247
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.09 E-value=84 Score=32.71 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=50.6
Q ss_pred eCCCCCCCCCCCC-CeEEEcCCCCCcCHHHHHHHHhhcCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 008162 28 YSHRDPSIRKSGT-GNIFIKNLDKSIDHKALHDTFSSFGN-ILSCKIATDGSGQSKGFGFVQFENKESAQNAID 99 (575)
Q Consensus 28 ~s~~~~~~r~~~~-~~lfV~nLp~~ite~~L~~~F~~~G~-I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~ 99 (575)
+.-.++.++.+.- .-|-|.++|.....+||...|+.|++ -..|+.+.| -.||-.|.+...|..||-
T Consensus 378 s~~p~~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 378 SKAPPPLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccCCCCCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhh
Confidence 3444455555543 34779999999999999999999984 456677654 269999999999999994
No 248
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.41 E-value=6 Score=42.47 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=51.3
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~ 107 (575)
.+.||++|+.++++-++|..+++.+--++.+-+..+ ....-..+++|+|.-.-.-..|+..||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 566999999999999999999999866665555444 23335667999998777777777777776543
No 249
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.67 E-value=43 Score=32.87 Aligned_cols=67 Identities=21% Similarity=0.400 Sum_probs=43.1
Q ss_pred ceeEEEecCCCC------------CCHHHHHHHhhhcCCeeEEEEeeC-C-----CCCC-----CceEE---------EE
Q 008162 234 GLNLYIKNLGDS------------IDDEKLKELFSEFGTITSCKVMRD-P-----SGIS-----KGSGF---------VA 281 (575)
Q Consensus 234 ~~~l~V~nl~~~------------~t~~~l~~~F~~~G~v~~~~i~~~-~-----~g~s-----kg~af---------V~ 281 (575)
..+||+.+||-. .+++.|+..|+.||.|..|.|... + +|+. .||+| |.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888888733 357899999999999999988643 2 4443 34443 33
Q ss_pred eCCHHHHHHHHHHhCCcee
Q 008162 282 FSTPEEASRALAEMNGKMI 300 (575)
Q Consensus 282 f~s~~~A~~A~~~lng~~i 300 (575)
|.....-..|+.+|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 4444444556666666544
No 250
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=34.85 E-value=93 Score=26.63 Aligned_cols=46 Identities=26% Similarity=0.536 Sum_probs=27.5
Q ss_pred cCCCHHHHHHHhccC-CCeeEEE-EE--eC--CCCCcceeEEEEeCCHHHHHH
Q 008162 141 ESTTDEDLKKIFGEY-GTITSAV-VM--RD--GDGKSKCFGFVNFENADDAAK 187 (575)
Q Consensus 141 ~~~tee~L~~~F~~~-G~i~~i~-i~--~d--~~g~skg~afV~F~~~e~A~~ 187 (575)
.+++++||+|-.++. -.-.+++ ++ +. ..|+++|||.| |.+.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 367888888877543 2222222 22 22 46889999988 666665543
No 251
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=34.54 E-value=14 Score=41.96 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCCCCCeEEEcCCCCC-cCHHHHHHHHhhcC--CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-------
Q 008162 36 RKSGTGNIFIKNLDKS-IDHKALHDTFSSFG--NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML------- 105 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~-ite~~L~~~F~~~G--~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~------- 105 (575)
.+..+++|+|.+||.+ .++++|+++|.+.+ .|.+.+++.+ +.+.++.-++..++-...
T Consensus 204 ~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~~~------------~~~l~~l~k~R~ki~~klE~~~~~~ 271 (827)
T COG5594 204 NNLSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLCRD------------LGTLQELYKERDKILKKLEKALNEL 271 (827)
T ss_pred cCCCCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhhhh------------hHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred -------------cCCeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHH------hccCCCeeEEEEEeC
Q 008162 106 -------------INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI------FGEYGTITSAVVMRD 166 (575)
Q Consensus 106 -------------i~g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~------F~~~G~i~~i~i~~d 166 (575)
-.-.++.....................+..++.+++....+++..+ ...++....-.-...
T Consensus 272 ~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVdaI~y~s~~l~~l~~~i~~~r~~~ 351 (827)
T COG5594 272 LNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVDAIDYYSAKLTKLDAEIENARKSL 351 (827)
T ss_pred HHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceecHHHHHHHHHHHHHHHHHHHHhCc
Q ss_pred CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCee-EEEcccccc
Q 008162 167 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-WYVGKAQKK 210 (575)
Q Consensus 167 ~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~-l~v~~a~~~ 210 (575)
......+.|||+|++...|+.|-+..-.....+.. +.+..+...
T Consensus 352 ~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnD 396 (827)
T COG5594 352 YENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPND 396 (827)
T ss_pred cccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccc
No 252
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.05 E-value=51 Score=30.43 Aligned_cols=50 Identities=28% Similarity=0.221 Sum_probs=34.6
Q ss_pred cCHHHHHHHHhhc-CCeeEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHHHh
Q 008162 52 IDHKALHDTFSSF-GNILSCKIATDGSG--QSKGFGFVQFENKESAQNAIDKL 101 (575)
Q Consensus 52 ite~~L~~~F~~~-G~I~~i~v~~~~~g--~skG~afV~F~t~e~A~~Ai~~l 101 (575)
+|++.|.++..-- |.+..+......++ ..+|..||+|.+.+.|.++++..
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 4555555443211 67877766555444 57899999999999999988753
No 253
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.83 E-value=77 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=15.9
Q ss_pred HHHHHHhccCCCeeEEEEE
Q 008162 146 EDLKKIFGEYGTITSAVVM 164 (575)
Q Consensus 146 e~L~~~F~~~G~i~~i~i~ 164 (575)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999866654
No 254
>PF15063 TC1: Thyroid cancer protein 1
Probab=31.54 E-value=24 Score=27.57 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=29.3
Q ss_pred eCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCe
Q 008162 28 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI 67 (575)
Q Consensus 28 ~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I 67 (575)
|...|...|+..+.||| .+++...|..+|+.-|+-
T Consensus 18 g~~~dt~~RKkasaNIF-----e~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 18 GYKFDTASRKKASANIF-----ENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred CCCcchHHhhhhhhhhh-----hccCHHHHHHHHHHccch
Confidence 66667777888888887 679999999999999964
No 255
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.31 E-value=1e+03 Score=28.55 Aligned_cols=213 Identities=17% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCCCCCCCCCCC
Q 008162 328 RPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 407 (575)
Q Consensus 328 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~pp~~~~~~~~~~~p~~~p~~~~~p~~~~p~~~~~~~~~~~~~~ 407 (575)
.+.......+.....+.+......++...+...+...+|.+....+..+.|.....-.|.+++++|+....+..+..|..
T Consensus 795 ~p~~~s~~~p~~~stP~~~~~~~~P~~~~~~~~~~~~~~~~~~S~p~~~~pv~sgs~~P~~~~~~p~~~~~~~p~~~g~~ 874 (1049)
T KOG0307|consen 795 TPAPQSNARPNSASTPTPPAFSFTPPPSSGAADQYSQPPAAPPSFPYAPNPVTSGSVNPAPYGPGPPGSWNQPPALQGSY 874 (1049)
T ss_pred CCCCcCCCCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcc---ccchhh
Q 008162 408 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI---TALSTA 484 (575)
Q Consensus 408 ~~~~p~~~~~~p~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~ 484 (575)
+-...++...++.+...+.+-|....+. ..+.-|+.+++.++....|.|. ... .++.|..+..+... +.....
T Consensus 875 ~~~~iP~~~~P~a~~~~p~~~P~~~~~s--v~p~~P~~~~~~~~~s~~Ptp~-~~~-~~~~Q~~~~~~~~~~~~P~~~~~ 950 (1049)
T KOG0307|consen 875 RKPKIPPTVMPPAPITSPNGGPSQNPQS--VQPQSPPIPQPLPPVSPAPTPG-QPA-PLQSQPLPTAPAPKHPIPEELQI 950 (1049)
T ss_pred CCCCCCcccCCCccccCCCCCCCCCccc--ccCCCCCCCCCCCCCCCCCCCC-CCC-CcccccCCCCCCcccCCchHHHH
Q ss_pred hhcCChHHHHHHHhhhhhhhhhhccCCccchhhhhhcC--CCh-------HHHHHhcCChHHHHHHHHHHHHH
Q 008162 485 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE--MDQ-------TEVLHLLESPEALKAKVAEAMEV 548 (575)
Q Consensus 485 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~--~~~-------~~~~~~~~~~~~l~~~~~~a~~~ 548 (575)
+-..-.+..-++. -++=+..++.-.|. -|+-+||-+ =++ +.|.+|-..=+. ..++||+.+
T Consensus 951 i~~~~e~~~~r~~-a~~~~~~krkl~d~-~kRL~~L~~~L~~~~LSp~~~~~L~~la~~i~~--~~y~~a~~i 1019 (1049)
T KOG0307|consen 951 IETFLEELLQRCS-ARTDPQTKRKLKDV-TKRLEILFDKLRDGTLSPPITDGLHQLAQSIKN--RDYSEALQI 1019 (1049)
T ss_pred HHHHHHHHHHHhh-ccCCHHHHHHHHHH-HHHHHHHHHHHhcCCcChHHHHHHHHHHHHHhh--ccHHHHHHH
No 256
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=28.05 E-value=1.6e+02 Score=26.33 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=38.0
Q ss_pred eEEEeCCCcCCCHHHHHHHhcc-CC-CeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHH
Q 008162 133 NVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190 (575)
Q Consensus 133 ~v~V~nLp~~~tee~L~~~F~~-~G-~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~ 190 (575)
+-|+-.+....+..+|++.++. |+ .|..|..+....|.. -|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 4555556778899999998886 45 567777665544432 47999977766655443
No 257
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=27.55 E-value=2.5e+02 Score=21.39 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=33.1
Q ss_pred CHHHHHHHHhhcC-CeeEEEEeeCCCCCcccEEEEEeCC---HHHHHHHHHHhcC
Q 008162 53 DHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFEN---KESAQNAIDKLNG 103 (575)
Q Consensus 53 te~~L~~~F~~~G-~I~~i~v~~~~~g~skG~afV~F~t---~e~A~~Ai~~lng 103 (575)
.-.++.+.|+.+| +|.+|.-.........-.-||.++. ....+.+++.+..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3677889999987 7777744443332344467788874 5666677776644
No 258
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.37 E-value=84 Score=25.19 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=24.3
Q ss_pred CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 008162 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 103 (575)
Q Consensus 66 ~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng 103 (575)
.|.|+....+ -+||-||+=.+..+..+|++.+.+
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccc
Confidence 6777755543 899999999999999999976655
No 259
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=27.35 E-value=3.8e+02 Score=30.82 Aligned_cols=10 Identities=50% Similarity=0.428 Sum_probs=4.4
Q ss_pred EEEeCCHHHH
Q 008162 176 FVNFENADDA 185 (575)
Q Consensus 176 fV~F~~~e~A 185 (575)
.+.|++....
T Consensus 296 ~~r~~~~~~~ 305 (756)
T KOG2375|consen 296 GVRFENEDFN 305 (756)
T ss_pred chhhhhhhhh
Confidence 4445444433
No 260
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=26.00 E-value=2.5e+02 Score=21.76 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=33.1
Q ss_pred CHHHHHHHHhhcC-CeeEEEEeeCCCCCcccEEEEEeCC---HHHHHHHHHHhcC
Q 008162 53 DHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFEN---KESAQNAIDKLNG 103 (575)
Q Consensus 53 te~~L~~~F~~~G-~I~~i~v~~~~~g~skG~afV~F~t---~e~A~~Ai~~lng 103 (575)
.-.+|.+.|+.+| +|.++.......+...-.-||.++. .++..++++.+..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3667888999987 7777766554333333345567763 5666777777665
No 261
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.83 E-value=2.8e+02 Score=20.55 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred CHHHHHHHHhhcC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 008162 53 DHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100 (575)
Q Consensus 53 te~~L~~~F~~~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ 100 (575)
.-.+|-++|...| +|.++.+... +. ++..-+.+.+.+.|.++++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~--~~-~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADT--SE-FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEec--CC-CCEEEEEECCHHHHHHHHHH
Confidence 4567888888887 7888876543 22 45555667776677777754
No 262
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=25.72 E-value=6.8e+02 Score=26.96 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=2.4
Q ss_pred CCHHHH
Q 008162 143 TTDEDL 148 (575)
Q Consensus 143 ~tee~L 148 (575)
+++|||
T Consensus 220 ldeEDl 225 (654)
T COG5180 220 LDEEDL 225 (654)
T ss_pred cchhhh
Confidence 344443
No 263
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=24.27 E-value=13 Score=40.16 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=50.9
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCC
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g 199 (575)
.++||+.|++++++-.+|..+++.+.-+..+.+..+ ...+...+++|+|+.--....|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 356999999999999999999998866555554433 223455688999987777777777777766543
No 264
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.29 E-value=2.5e+02 Score=21.75 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 008162 54 HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102 (575)
Q Consensus 54 e~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ln 102 (575)
-.+|.+.+..+| +...++.-. | .-++.|+-+.+.+.++++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGs--G-~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGS--G-GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETT--S-SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCC--C-CCCeEEEEECCHHHHHHHHHHHH
Confidence 345777888888 656666431 1 15678888889999999888764
No 265
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=21.46 E-value=3.7e+02 Score=21.29 Aligned_cols=49 Identities=6% Similarity=0.075 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCC-CcCHHHHHHH
Q 008162 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDK-SIDHKALHDT 60 (575)
Q Consensus 5 ~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~-~ite~~L~~~ 60 (575)
.|...||.++.|..-.|..|+|.-+.. ...++.|=..|. .+++++|...
T Consensus 25 ~DPraaL~e~G~~~P~~~~i~VvE~t~-------~~~~lVlP~~P~~~lse~~L~~v 74 (77)
T TIGR03793 25 TNPKEALEREGVQVPAEVEVKVVEESP-------TVLYLVLPVNPDIELTDEQLDAV 74 (77)
T ss_pred HCHHHHHHHhCCCCCCceEEEEEEcCC-------CeEEEEecCCCCCCCCHHHHHHh
Confidence 678899999999999999999876532 355677766666 7888888653
No 266
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.34 E-value=2.9e+02 Score=21.25 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcC-CeeEEEEeeCC--CCCcccEEEEEeC-CHHHHHHHHHHhcC
Q 008162 54 HKALHDTFSSFG-NILSCKIATDG--SGQSKGFGFVQFE-NKESAQNAIDKLNG 103 (575)
Q Consensus 54 e~~L~~~F~~~G-~I~~i~v~~~~--~g~skG~afV~F~-t~e~A~~Ai~~lng 103 (575)
-.++.+.|+.+| ++. +|...+ .....-+-||.|+ +.++..+|++.+..
T Consensus 14 L~~vL~~f~~~~iNlt--~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLT--HIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEE--EEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 566777888886 444 444443 2222234567777 55566777777654
No 267
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.29 E-value=21 Score=37.43 Aligned_cols=77 Identities=5% Similarity=-0.056 Sum_probs=58.4
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
+..++..++...+++++.-+|..||.|..+...+. ..|..+-.+||.-.. .++..+|..+....+.+..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 34678889999999999999999999988877655 455666677887654 457777877777777777777766544
No 268
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.22 E-value=1.3e+02 Score=30.79 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=24.5
Q ss_pred EEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 175 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 175 afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
|||+|++..+|..|.+.+.... ++.+.+..|...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 6999999999999998655443 344566666543
No 269
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=20.94 E-value=1.2e+02 Score=30.22 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=35.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCe-eEEEEeeCCCCCCCceEEEEeCCHH
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPE 286 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v-~~~~i~~~~~g~skg~afV~f~s~~ 286 (575)
.+-|||+||+.++...||+..+.+-|.+ .++...-. .|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~-----~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGH-----FGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecC-----CcceeEecCCcc
Confidence 3569999999999999999999876533 33433222 567999997653
No 270
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=20.71 E-value=4.6e+02 Score=21.15 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCeEEEcCCCCCcCHHHHHH----HHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 008162 40 TGNIFIKNLDKSIDHKALHD----TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~----~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l 101 (575)
.+.|+|..++.+++-++|.+ +|+-.-...--....|+.|. -|.|.|.++-..|++.+
T Consensus 8 ~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~ 68 (83)
T cd06404 8 NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGD-----PCTISSQMELEEAFRLY 68 (83)
T ss_pred cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC-----ceeecCHHHHHHHHHHH
Confidence 35688999999999877654 45433221222344566664 38899999999999754
No 271
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=20.43 E-value=5.9e+02 Score=22.43 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCC
Q 008162 7 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG 78 (575)
Q Consensus 7 A~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g 78 (575)
-..+|.++....++|++++|..-..... -.+..-|||..-. ...+.+++..+ .-..+.++.+..+
T Consensus 38 ~~~~L~~l~~~~~~~~~i~v~~~~~~~~--~~~C~ilyi~~~~----~~~~~~i~~~~-~~~~vLtIsd~~~ 102 (145)
T PF13689_consen 38 FAEALSTLAGKQVGGRPIRVRRLSSPNE--ISGCHILYISSSE----SSQLPEILRKL-PGKPVLTISDGEG 102 (145)
T ss_pred HHHHHHHhhhcccCCCcEEEEECCCCcc--cccccEEEECCCC----hHHHHHHHHhc-CCCceEEEECCCC
Confidence 3467888888999999999985432212 2556678988754 44555555544 2223455555333
No 272
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=20.06 E-value=7.4e+02 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=11.7
Q ss_pred EEEecCCCCCCHHHHHHHhhhcC
Q 008162 237 LYIKNLGDSIDDEKLKELFSEFG 259 (575)
Q Consensus 237 l~V~nl~~~~t~~~l~~~F~~~G 259 (575)
+|+-+|+..-..+++-.-|+.-|
T Consensus 219 f~~p~l~~~g~~d~~ss~~ed~g 241 (487)
T KOG4672|consen 219 FRVPGLKPPGPPDGLSSNFEDSG 241 (487)
T ss_pred ccccCCCCCCCCccccCCCCCCC
Confidence 55555555555555544454444
Done!